BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
(187 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 187
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH
Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ
Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR
Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
Query: 181 LMINFDV 187
LMINFDV
Sbjct: 181 LMINFDV 187
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 142/186 (76%), Positives = 173/186 (93%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH
Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ
Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L D RGH++LG+AA M++G ++MR
Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321
Query: 181 LMINFD 186
MINFD
Sbjct: 322 TMINFD 327
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 154/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH ++G +A +M IGI+VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL
Sbjct: 152 LIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQALS
Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL
Sbjct: 152 LIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 154/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 154/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRR+IE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 336
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/183 (60%), Positives = 152/183 (83%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IK+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL+
Sbjct: 154 IKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLN 213
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALSM
Sbjct: 214 VPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALSM 273
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
EAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G +A +M IGI +MR MIN
Sbjct: 274 EAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMIN 333
Query: 185 FDV 187
FD+
Sbjct: 334 FDI 336
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 154/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
++K+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PV++EFRRV+E+Q +GL
Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS
Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332
Query: 184 NFDV 187
NFD+
Sbjct: 333 NFDI 336
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332
Query: 184 NFDV 187
NFD+
Sbjct: 333 NFDI 336
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332
Query: 184 NFDV 187
NFD+
Sbjct: 333 NFDI 336
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 111/184 (60%), Positives = 153/184 (83%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIK+R KFL++FPNALD+I RS+R+GLP++DAV ++ ++ +PVR+EFRRV+ETQ +GL
Sbjct: 152 LIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVGL 211
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S++++ +RM +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV ALS
Sbjct: 212 SMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVALS 271
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V LVY TSP YM +L DPRGH+++ +A +M G+++MR M+
Sbjct: 272 MEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQMV 331
Query: 184 NFDV 187
NFD+
Sbjct: 332 NFDI 335
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 151/184 (82%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI++R KFL +FPNALD++VRS+++GLP++DA+ +I + +PV++EFRRV++ Q LG+
Sbjct: 151 LIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQLGI 210
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ E+ RM MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV ALS
Sbjct: 211 TVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVSALS 270
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V+ LVY +SP Y+ VL DPRGHM+LG +A +M IGI VMR MI
Sbjct: 271 MEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMRNMI 330
Query: 184 NFDV 187
NFD+
Sbjct: 331 NFDI 334
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 109/184 (59%), Positives = 150/184 (81%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L+K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+
Sbjct: 151 LLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + I RM+ MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV ALS
Sbjct: 211 GIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALS 270
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V LV+FTSP Y+++L D RGH++LG +A +MLIGI +MR MI
Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMI 330
Query: 184 NFDV 187
NFD+
Sbjct: 331 NFDI 334
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 151/184 (82%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
++K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+
Sbjct: 151 ILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + I RM+ +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV ALS
Sbjct: 211 GIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALS 270
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LPF V LV+FTSP Y++VL D RGH++LGV+ +MLIGI +MR MI
Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMRQMI 330
Query: 184 NFDV 187
NFD+
Sbjct: 331 NFDI 334
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 110/185 (59%), Positives = 142/185 (76%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G
Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL
Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLGVAA ML GI +M+ M
Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331
Query: 183 INFDV 187
INFD+
Sbjct: 332 INFDM 336
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 233 bits (594), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 105/185 (56%), Positives = 148/185 (80%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L +R FL +FPNALDI+VRS+++GLP++DA+ +I + +PVR+EF+R++++Q +G
Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+++ E+ +R+ +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL
Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
SMEAKASA IIG+LPF V+ LVY TSP Y+ +L D RGH++LG +A +M IGI+VMR M
Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331
Query: 183 INFDV 187
INFD+
Sbjct: 332 INFDI 336
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 141/182 (77%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +GLS+
Sbjct: 156 KRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLSI 215
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSME
Sbjct: 216 PEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSME 275
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AKASA IIG+LPF V LVY TSP YM +L GHMLLG+AA ML GI +M+ MINF
Sbjct: 276 AKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMINF 335
Query: 186 DV 187
D+
Sbjct: 336 DM 337
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/181 (59%), Positives = 143/181 (79%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +G+S+
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQMGISIP 216
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG AA +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMRKMMNFE 336
Query: 187 V 187
V
Sbjct: 337 V 337
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 146/185 (78%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L ++R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PVR+EFRR++E Q LG
Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L ++E+ RM MP EV+FF V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL
Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
SMEAKASA IIG+LP V+ LVY TSP Y+ L ++ GH++LG++A +M IGI VMR M
Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332
Query: 183 INFDV 187
+NF+V
Sbjct: 333 MNFEV 337
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/181 (59%), Positives = 143/181 (79%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PV++EFRR++++Q +GLS+
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQMGLSIP 216
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336
Query: 187 V 187
V
Sbjct: 337 V 337
>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 337
Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/181 (59%), Positives = 142/181 (78%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +GLS+
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMGLSIP 216
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV ALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEA 276
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336
Query: 187 V 187
V
Sbjct: 337 V 337
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 144/182 (79%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR F + FP A+D+IVR V+AGLP++D + +V DPV SEF++V+E Q +G++L
Sbjct: 154 KKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQMGVTL 213
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+QA+SME
Sbjct: 214 GDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSME 273
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AKASA IIGS+P V++++Y TSP Y+NVL++DPRG+++L +A +MLIG+++M+ MINF
Sbjct: 274 AKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMKKMINF 333
Query: 186 DV 187
D+
Sbjct: 334 DI 335
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 141/181 (77%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q +G+ +
Sbjct: 154 KKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQMGVPI 213
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
SE++ ++ R +P E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQA+SME
Sbjct: 214 SEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSME 273
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AKAS IIG+LP V+ LVY T+P Y++VL GH++L V+ +M G+ VM+ MI+F
Sbjct: 274 AKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMKKMISF 333
Query: 186 D 186
D
Sbjct: 334 D 334
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/186 (54%), Positives = 139/186 (74%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R KFLD P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ
Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ R+ MPL E +FF V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q
Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V +VYF SP Y+++L +P G ++L V+ A+M G+M+M+
Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318
Query: 181 LMINFD 186
MINFD
Sbjct: 319 KMINFD 324
>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 326
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 135/187 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R +KF+++FP ++D+I+R V+AGLPV+D VI + +PVR EFRR+IE+Q
Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+GLS+ E++ R +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+
Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+S EAKASA IIGSLPF V VY T+P YM VL G +++ +M IG+ +MR
Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319
Query: 181 LMINFDV 187
MINFD+
Sbjct: 320 KMINFDI 326
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 136/186 (73%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L ++R +FL+ P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ
Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ R+ MPL E +FF VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q
Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LP V +VY SP Y+++L P G +L A +M GI+VM+
Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316
Query: 181 LMINFD 186
MINFD
Sbjct: 317 KMINFD 322
>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 324
Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 134/186 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L ++R KFL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ
Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 340
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 135/186 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R +KFL P+A+D+IVR ++AGLP+ +++ V+ S +P+RSEF +IETQ
Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ SR+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q
Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY T+P Y+++L P G ++L +M +GIMVM+
Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333
Query: 181 LMINFD 186
MINFD
Sbjct: 334 KMINFD 339
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 140/186 (75%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +LIK+R F ++F NA+D+IVR V++GLPV+D + +I +S +PVR+EF+ ++E Q
Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G++L + ++++ MPL EV+FF V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q
Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+S EAKASA IIGSLP V L+YF+SPGYM+VL + G+M++ +M IG++VM+
Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321
Query: 181 LMINFD 186
MI+F
Sbjct: 322 KMIDFK 327
>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 134/186 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L ++R +FL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ
Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 138/187 (73%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L ++R AKF++ FP ++DII+R ++AGLPV D +I ++ +PVRSEFR+++E+Q
Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+GLS+ E+ R MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+
Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+S EAKASA IIGSLPF V V+FT+ YM VL + G+M++ + +M +G+ +M+
Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315
Query: 181 LMINFDV 187
MI+F++
Sbjct: 316 NMIDFEI 322
>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 134/183 (73%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R KFL P+A+D+IVR ++AGLP+ D++ V+ + +P+RSEF +IETQ +G+
Sbjct: 141 LKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQAIGM 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L+++ +R+ MPL E +FF VI++Q + GGNLSEAL+NLS++LRDRK M K+QA+S
Sbjct: 201 PLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMS 260
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIG+LP V LVY T+P Y+++L P G +LL +A +M GI VM+ MI
Sbjct: 261 MEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMKKMI 320
Query: 184 NFD 186
NFD
Sbjct: 321 NFD 323
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 134/187 (71%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316
Query: 181 LMINFDV 187
MINFD+
Sbjct: 317 KMINFDI 323
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 134/187 (71%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316
Query: 181 LMINFDV 187
MINFD+
Sbjct: 317 KMINFDI 323
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/187 (49%), Positives = 134/187 (71%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316
Query: 181 LMINFDV 187
MINFD+
Sbjct: 317 KMINFDI 323
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 132/186 (70%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R KF++ P+A+D+IVR ++AGLP+ D++ V+ S +P++SEF +IETQ
Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ +R+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/186 (50%), Positives = 134/186 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ
Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI+VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 134/187 (71%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K ++R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q
Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316
Query: 181 LMINFDV 187
MINFD+
Sbjct: 317 KMINFDI 323
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 132/181 (72%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R FL++ PN +DIIVR V+AGLP+SD V V+ ++ +PV +EFR+V ETQ +G+SL
Sbjct: 158 KRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVSL 217
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E++S+M +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS E
Sbjct: 218 AEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSE 277
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIG+LPF V +++F +P YM +L G +++ +M GIMVMR MINF
Sbjct: 278 AKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMINF 337
Query: 186 D 186
D
Sbjct: 338 D 338
>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 131/186 (70%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P++SEF ++ETQ
Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M IGI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 QMINFD 323
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 132/186 (70%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ
Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ +R+ MPL E +FF V+++Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 129/186 (69%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P+R+EF +++TQ
Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G M+L +M IG+ VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 136/187 (72%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K K+R A F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E Q
Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+GL +S++I RM +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M K+Q
Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF + Y +SP Y ++L G + L ++ +ML G++VM+
Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316
Query: 181 LMINFDV 187
MI+FDV
Sbjct: 317 KMISFDV 323
>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 131/183 (71%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L K+R +FL+ P+A+D+IVR ++AGLP+ D++ V+ S +P+++EF +IETQ +G+
Sbjct: 141 LKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQTIGM 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+QA+S
Sbjct: 201 PIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMS 260
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ MI
Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMKKMI 320
Query: 184 NFD 186
NFD
Sbjct: 321 NFD 323
>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 130/186 (69%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++HL KR AKF + PNA+D++VR +R G+PV D ++ ++ +PVRSEFR V+ETQ
Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+GLSL E+ +R+ +P EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR M+ KVQ
Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA II LPF V+ + TSP Y+++L G + L AA +M IGI ++
Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318
Query: 181 LMINFD 186
MI F+
Sbjct: 319 KMIAFE 324
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 131/181 (72%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR FL++ PNA+DIIVR V+AGLP+ D + ++ ++ DPV EFR+++E Q +GL+L
Sbjct: 158 RKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQVMGLTL 217
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E++ R+ +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ALS E
Sbjct: 218 TEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSE 277
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIGSLPF VS ++Y +P Y+ +L + G+M++ +M IG MVM+ MINF
Sbjct: 278 AKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMKNMINF 337
Query: 186 D 186
D
Sbjct: 338 D 338
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 131/183 (71%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L K+R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ +G+
Sbjct: 141 LKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQAIGM 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S
Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VM+ MI
Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMKKMI 320
Query: 184 NFD 186
NFD
Sbjct: 321 NFD 323
>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 327
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 126/172 (73%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
+FPNA+D+IVR V+AGLP+ D + ++ ++ +PV+SEFR ++E Q LG+ L +++ R+
Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
MPL E FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II
Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+LP V +LVY TSP YM +L P G +L +ML+G ++MR MINFD
Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326
>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 338
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 135/181 (74%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R +F ++F NA+D+IVR +++GLPV D + +I ++ +PV+SEF +++ Q LG+SL
Sbjct: 157 KRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGISL 216
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ R+ +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S E
Sbjct: 217 DEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSE 276
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIG+LPF VS +Y TSP YM++L + G ++L A +M +GI+VMR MINF
Sbjct: 277 AKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMINF 336
Query: 186 D 186
D
Sbjct: 337 D 337
>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 188
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 134/187 (71%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I ++ +P+RSEFR +E Q
Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LGL++ ++I RM +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M K+Q
Sbjct: 62 LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIG+LPF V+ Y +SP Y +L G + L ++ +M +GI VM+
Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181
Query: 181 LMINFDV 187
MI+FDV
Sbjct: 182 KMISFDV 188
>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 324
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 131/183 (71%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R FL P+A+D+IVR ++AGLP+ +++ V+V S +P++SEF +IETQ +G+
Sbjct: 141 LKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQAVGM 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S
Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VMR MI
Sbjct: 261 TEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMRKMI 320
Query: 184 NFD 186
NFD
Sbjct: 321 NFD 323
>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
Length = 340
Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 131/181 (72%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R FL++ PN +DIIVR V+AGLP+SD + V+ ++ DPV +EFR++ ETQ +G+SL
Sbjct: 159 KRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGISL 218
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ ++ +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS E
Sbjct: 219 ADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAE 278
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIGSLPF V ++Y SP Y+ VL G++++ +M GIMVMR MINF
Sbjct: 279 AKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMINF 338
Query: 186 D 186
D
Sbjct: 339 D 339
>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 340
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 131/181 (72%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR F+++ PN +DIIVR V+AGLP+ D V V+ ++ DPV +EF +++ETQ +G+SL
Sbjct: 159 KKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQKMGVSL 218
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E+ ++ +PL E +FF+ V+++Q GG LSEAL NLSR+LR RK +K K+ ALS E
Sbjct: 219 AEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSE 278
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIG++P +S ++F +P Y+N+L+ GH+++ +MLIGI+VMR MINF
Sbjct: 279 AKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMRQMINF 338
Query: 186 D 186
D
Sbjct: 339 D 339
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 128/186 (68%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L +R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ
Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q
Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G ++L +M GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317
Query: 181 LMINFD 186
MINFD
Sbjct: 318 KMINFD 323
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 126/182 (69%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R KF ++F +ALDIIVR V++GLP+++ + +I + PV+ EF+ ++E +G+ +
Sbjct: 150 KGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLAVGVDV 209
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV ALS E
Sbjct: 210 EEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVSALSSE 269
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AKASAWIIGSLP V +V SP YM L+ P GH LL +ML GI+VMR MINF
Sbjct: 270 AKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMRSMINF 329
Query: 186 DV 187
+
Sbjct: 330 KM 331
>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 339
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 134/182 (73%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR +FL++FPNA+DIIVR +++G+P+ D + + ++ DPV +EF V++ +G+ L
Sbjct: 158 KKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQMGMPL 217
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E+I + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++A+S E
Sbjct: 218 AEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQE 277
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK+SA IIGSLPF V+ L++ SP Y+ +L++ G +L+G+ +M IGI+VMR MI+F
Sbjct: 278 AKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMRKMIDF 337
Query: 186 DV 187
+
Sbjct: 338 KI 339
>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 333
Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 129/179 (72%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E
Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK
Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD
Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332
>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 333
Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 129/179 (72%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E
Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK
Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD
Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 123/180 (68%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A F FPNA+D+IVR +++GLP++D + +I S +PVR EFR++IE +G+ +
Sbjct: 151 KKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQMGIPV 210
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E+ R+ + +P E +FFS VI++QS GGNLSEAL NLS++LR+R+ M K+QA S E
Sbjct: 211 PEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQAFSSE 270
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S IIG+LPF V+ +V+ TSP Y+ L GH +L A M GI+VM+ MINF
Sbjct: 271 AKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMKKMINF 330
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 141/187 (75%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I ++ +PVR+EFR ++E+Q
Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+SLSE+ +++ MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M KV
Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEA+ASA II SLPF V+ L YF+SP Y+++L G + + ++ +M++G++VM+
Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315
Query: 181 LMINFDV 187
MI F++
Sbjct: 316 RMITFEI 322
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 121/183 (66%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R KF F + +D+IVR V++GLP+ + + +I +S P+ +EF+RVI+ +G +
Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +S+S M MPL EV+FF VI +Q Q GGNLSEAL NLS +LR RK + KV+ALS
Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
EAKASA IIG+LP V LVYF+SP Y+ +L P GH +L V A M GI VM+ M+
Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328
Query: 185 FDV 187
DV
Sbjct: 329 LDV 331
>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 322
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 137/187 (73%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I ++ DPV++EFR ++E+Q
Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+GL L E+ +++ MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M KV
Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A+SMEA+ASA II SLPF V+ L Y +SP Y+++L G + + + +MLIG++VM+
Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315
Query: 181 LMINFDV 187
MI F++
Sbjct: 316 RMITFEI 322
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/183 (48%), Positives = 127/183 (69%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L K+R AKF NA+D++VR V++GLP+++ + VI +S +P+ EFR V+E Q LG
Sbjct: 148 KLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLG 207
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ L++++ RM MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ + KV+AL
Sbjct: 208 VPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKAL 267
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S EAKASA ++ SLP V +VY +SPGYM L G ++ + A +M IG++VM+ M
Sbjct: 268 SAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKM 327
Query: 183 INF 185
INF
Sbjct: 328 INF 330
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 127/180 (70%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K RT KF + F +A+DIIVR +++GLPV+D + +I + +P+ EFR ++E +G+S+
Sbjct: 144 KARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMGMSM 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ RM MP E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M K++ALS E
Sbjct: 204 DQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAE 263
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A ASA+IIG+LP V L+ T+P YM + D RGH++L VAA +M +GI VMR MINF
Sbjct: 264 AVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKMINF 323
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 125/185 (67%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K RT KF + F +A+DIIVR +++GLPV D + +I + +P+ EFR + E
Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ + ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS EA ASA+IIG LP V TL+ TSP YM + DPRGH++L +A +M IGI VMR
Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318
Query: 181 LMINF 185
MINF
Sbjct: 319 NMINF 323
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 125/186 (67%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L K+RT KF +F +A+DI+VR +++GLPV D + +I + P+ EF+R+ E
Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L S+ +M MP E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++
Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS EA ASA IIG LP V ++Y T+PGYM L+ DPRG+ +L A +ML GI +MR
Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319
Query: 181 LMINFD 186
MINF
Sbjct: 320 KMINFK 325
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/187 (48%), Positives = 127/187 (67%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ LIK R K ++ F +ALDIIVR VR+GLP+++ + VI +S +P+R EF +
Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G L S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+
Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS EAKASA IIGSLP V +V+ T+P Y+ L GH++L VA M GI VMR
Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332
Query: 181 LMINFDV 187
M+NFD+
Sbjct: 333 NMMNFDM 339
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 124/182 (68%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L + R KF + F +A+DIIVR +++GLP+ D + +I +S +P+ EFR + E +G+
Sbjct: 142 LAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVAMGV 201
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ALS
Sbjct: 202 PLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALS 261
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA ASA IIG+LP V L+ TSP YM L DPRGH++L AA +M IG++VMR MI
Sbjct: 262 AEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMRKMI 321
Query: 184 NF 185
NF
Sbjct: 322 NF 323
>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 332
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 130/179 (72%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R AKF +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E
Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ RM MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK
Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+SA IIG+LPF V+ VYF SP YM +L G ++L +M IGI+VMR MINFD
Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331
>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
secretion [Sinorhizobium fredii NGR234]
gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 332
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 131/180 (72%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R +F +FPNA+D+IVR ++AGLP++D + VI ++ +PV+ EF + Q LGL +
Sbjct: 152 RRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLPVD 211
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ R+ MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EA
Sbjct: 212 EAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEA 271
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K+SA IIG+LPF V+ VY TSP YM++L G M+L +A +M IG ++MR MINFD
Sbjct: 272 KSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMINFD 331
>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
MSR-1]
Length = 279
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 122/184 (66%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L K+R A+F F +ALDI+VR +R+GLP+ + +A+I + +P+ EFR V+E Q LGL
Sbjct: 96 LGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLGL 155
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
SL ES++R V P + +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A S
Sbjct: 156 SLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAFS 215
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA ASA IIGSLP V+ L+ P Y+ +L + P GH+LL M +G +VMR MI
Sbjct: 216 SEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKMI 275
Query: 184 NFDV 187
NFD+
Sbjct: 276 NFDL 279
>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 327
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 124/181 (68%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R +F +F NALD+I R V++GLP+++ + ++ +S +PV++EF +++E +G+SL
Sbjct: 147 RRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIAVGVSLP 206
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+ + RM MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ ALS EA
Sbjct: 207 DGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIGALSSEA 266
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K+SA IIGSLP V +VY T+P YM + P G ++L +M IGIMVMR MINF
Sbjct: 267 KSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMRGMINFK 326
Query: 187 V 187
+
Sbjct: 327 I 327
>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 126/184 (68%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L K R KF +FPNA+D+IVR +++GLPV + +I +S P+ F++++E +G+
Sbjct: 143 LAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVGM 202
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+L +++ +M MP E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+ALS
Sbjct: 203 TLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALS 262
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA ASA II SLP V T+V FTSPGYM L D RG+ LL +A A M GI VM+ MI
Sbjct: 263 SEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRMI 322
Query: 184 NFDV 187
+F +
Sbjct: 323 SFKI 326
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 121/179 (67%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R KF ++FPNA+DI+VR +++GLPV D + +I +S P+ EF R++E +G+S+
Sbjct: 158 RLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVGVGMSVEG 217
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ +M +P E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ALS EA
Sbjct: 218 ALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAI 277
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
ASA IIG LP V ++ T P Y+ + DPRG ++L A +M +GI +MR MINF
Sbjct: 278 ASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMRKMINFK 336
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 124/181 (68%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KF +F NA+D+IVR +++GLPV D +I +S PV EF+ ++E +GL+L
Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +M +P E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M K++ALS E
Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A ASA IIGSLP V TLV T+P YM ++ D RG ++L +A +M +GI++M+ MI+F
Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324
Query: 186 D 186
Sbjct: 325 K 325
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 127/182 (69%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF ++F NA+D+IVR V++GLPV++ + +I + PV+ EF+ ++E Q +GL+L
Sbjct: 149 RKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQRIGLTL 208
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+S+ R+ MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M K+ ALSME
Sbjct: 209 EQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSME 268
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AKASA I+ ++PF VS LVY +P Y+ L + G +L A +MLIGI+VM+ MI+
Sbjct: 269 AKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMKNMISI 328
Query: 186 DV 187
V
Sbjct: 329 KV 330
>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 327
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 119/181 (65%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R KF F +A+DI+VR ++ GLPV D +I +S +P+ EFR ++E +GL+L
Sbjct: 146 KARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMGVGLTL 205
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ +M MP E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M K++ALS E
Sbjct: 206 AQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSE 265
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A ASA II SLP V LV ++P YM ++ D RG ++L AA +M G+ VM+ MI+F
Sbjct: 266 AIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMKRMISF 325
Query: 186 D 186
Sbjct: 326 K 326
>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 121/181 (66%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L
Sbjct: 150 KRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 209
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQA + EA
Sbjct: 210 EALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQAYAAEA 269
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ASA IIGSLP V ++ +P Y+ +L G++LL + +G++VMR MINFD
Sbjct: 270 RASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMRNMINFD 329
Query: 187 V 187
+
Sbjct: 330 I 330
>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 331
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 120/181 (66%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L
Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E+++R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA
Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ASA IIGSLP V ++ +P Y+ VL G++LL + G+MVMR MINFD
Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330
Query: 187 V 187
+
Sbjct: 331 I 331
>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
Length = 305
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L+ +R +FL F A+ +IVR +RAGLPV++ V V+ + PV EFRRV + LG
Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ ++ R + L E F + ++VQ + GGNL+E+L NL ILR R+ M+ K++A+S
Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA ASA IIG LPF ++ L+ SP YM VL P G +++ A + +G ++MR M+
Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301
Query: 184 NFDV 187
F++
Sbjct: 302 RFEI 305
>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
JL354]
Length = 323
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 123/185 (66%), Gaps = 2/185 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
+K+RTA+F FP+A+D++VR +R+GLPV++ +AV+ + PV EF+ +IE +G
Sbjct: 140 FMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIGR 199
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+ E++ + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S
Sbjct: 200 SMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMS 259
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
E+KASA+I+GSLPF V ++++ +P Y+ D R M+ G+ +M +G+ +M M
Sbjct: 260 SESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDER-LMIAGIGGLVWMSLGVFIMSKM 318
Query: 183 INFDV 187
++F++
Sbjct: 319 VSFEI 323
>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
Length = 323
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 121/185 (65%), Gaps = 2/185 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
I KRTA F FP+A++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G
Sbjct: 140 FINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIGK 199
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ E + + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S
Sbjct: 200 TMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAMS 259
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
E+KASA+I+G+LPF V ++++ +P Y++ D R +++G+ +M IG +M M
Sbjct: 260 SESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDER-LIVIGLGGMVWMSIGAFIMAKM 318
Query: 183 INFDV 187
++F++
Sbjct: 319 VSFEI 323
>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 327
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 116/183 (63%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +RT KF+ FP+A++++VR +R+GLP+++ ++V+ + PV EFR V + +G +
Sbjct: 145 INRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMKIGRT 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + E FF I++Q + GGNL+E L+NL+ +LR R MK K++A+S
Sbjct: 205 MDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIKAMSS 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E+KASA+IIG+LPF V +++ + YM DPR ++ G +M +G+ +M MIN
Sbjct: 265 ESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMSRMIN 324
Query: 185 FDV 187
F++
Sbjct: 325 FEI 327
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 115/184 (62%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I KR F+ FP+AL+++VR +R+GLP+S+ + V+ + PV EF+ V + LG +
Sbjct: 141 INKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIRLGRT 200
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +++ + L E SFF +++Q + GGNL+E LANL+ +LR R MK K++A+S
Sbjct: 201 MEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSS 260
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
E+KASA+I+GSLPF V L+Y +P Y+ D R M+ G+ L +G +M M+
Sbjct: 261 ESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDER-LMVAGIGGLIWLSMGAFIMSRMV 319
Query: 184 NFDV 187
NF++
Sbjct: 320 NFEI 323
>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 324
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L K+R A+F+ FP+A++++VR +RAGLP+++ + + + PV SEF+ V + +G
Sbjct: 141 LAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMRIGR 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+L ++ + E FF +++Q + GGNL+E L NL+ +LR R MK K+ A+S
Sbjct: 201 TLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMS 260
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
E+KASA+IIG LPF V L+ F SP YM D R M+ G +M IG +MR M
Sbjct: 261 SESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQR-LMIAGAGGLIWMSIGAYIMRQM 319
Query: 183 INFDV 187
INF++
Sbjct: 320 INFEI 324
>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
Length = 323
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKRT +F F +A++++VR +R+GLPV++ + V+ + PV EF+ ++E +G +
Sbjct: 141 IKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIGRT 200
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ES+ + + E +FF +++Q + GGNL+E L+NL+ +LR R MK K++A+S
Sbjct: 201 MEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSS 260
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
E+KASA+I+GSLPF V L+++ +P Y+ D R ++ G+ +M IG+ +M M+
Sbjct: 261 ESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDR-LIVTGLGGLTWMGIGVFIMAKMV 319
Query: 184 NFDV 187
+F++
Sbjct: 320 SFEI 323
>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 317
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 112/178 (62%)
Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
A F D P ALDI R +RAG PV+D++A++V + P+ EF R + +G +L E++
Sbjct: 140 ATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVRMGNTLPETL 199
Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
R+ +PL EV+FF+ ++Q++ GGNL E + NL+ LR+R+ ++ K +ALS EA+AS
Sbjct: 200 ERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARAS 259
Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
A I+ +LPF V+ L+ + Y+ L +DPRG + AA+ + +GI VM M +V
Sbjct: 260 AVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMVRMGKLNV 317
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 119/185 (64%), Gaps = 2/185 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
IKKRT F F + ++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G
Sbjct: 140 FIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIKIGK 199
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ +S+ + + E +FF+ +++Q + GGNL+E L+NL+ +LR R MK K++A+S
Sbjct: 200 TMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMS 259
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
E+KASA+I+GSLPF V L+Y +P Y+ + R M+ G+ +M IGI +M M
Sbjct: 260 SESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEER-LMVTGLGGLVWMSIGIFIMAKM 318
Query: 183 INFDV 187
++F++
Sbjct: 319 VSFEI 323
>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 310
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKR A+F FP+A+D++VR +R+GLPV++ V+ + PV EF+ V+E +G +
Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + E FF I +Q + GGNL+E LANLS +LR R MK K++A+S
Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
EAKASA+I+G+LPF V +V+ +P Y+ + R ++ G+ +M IG +M M+
Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQR-LIVAGIGGLIWMSIGAGIMAKMV 306
Query: 184 NFDV 187
NF++
Sbjct: 307 NFEI 310
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 116/184 (63%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I KR F+ P+ALD++VR +R+GLPV++ + V+ + PV EF+ V + +G +
Sbjct: 142 INKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVGRT 201
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ E++ + L E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S
Sbjct: 202 MEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSS 261
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
E+KASA+I+G+LPF V L+Y+ +P Y+ D R ++ G+ ++ IG +M M+
Sbjct: 262 ESKASAYIVGALPFIVFALIYWINPVYLGKFFVDER-LIIAGLGGLTWLGIGAFIMAKMV 320
Query: 184 NFDV 187
+F++
Sbjct: 321 SFEI 324
>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
Length = 319
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 100/156 (64%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +RT +FLD P+A+D++VR+ RAG+PVS+A+ ++ +PVRSEFRRV + +G+
Sbjct: 136 LTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVSIGV 195
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L +++ + + L + FF + VQ + GG L+E L NLS ILR RK+M+ KV+AL+
Sbjct: 196 DLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVKALT 255
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
E + SA I+ SLPF L++ P Y+ L DP
Sbjct: 256 AEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDP 291
>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 205
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 115/184 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199
Query: 184 NFDV 187
N D
Sbjct: 200 NLDT 203
>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 205
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199
Query: 184 NFD 186
N D
Sbjct: 200 NLD 202
>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 202
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 17 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 76
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 77 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 136
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 137 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 196
Query: 184 NFD 186
N D
Sbjct: 197 NLD 199
>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 204
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 19 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 78
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 79 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 138
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 139 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 198
Query: 184 NFD 186
N D
Sbjct: 199 NLD 201
>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 200
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 15 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 135 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 194
Query: 184 NFD 186
N D
Sbjct: 195 NLD 197
>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 212
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 27 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 86
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 87 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 146
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 147 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 206
Query: 184 NFD 186
N D
Sbjct: 207 NLD 209
>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 217
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 32 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 91
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 92 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 151
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 152 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 211
Query: 184 NFD 186
N D
Sbjct: 212 NLD 214
>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
Length = 331
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325
Query: 184 NFD 186
N D
Sbjct: 326 NLD 328
>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 223
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 38 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 97
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 98 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 157
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 158 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 217
Query: 184 NFD 186
N D
Sbjct: 218 NLD 220
>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
10229]
gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
Length = 331
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325
Query: 184 NFD 186
N D
Sbjct: 326 NLD 328
>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
1710b]
gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 331
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325
Query: 184 NFD 186
N D
Sbjct: 326 NLD 328
>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 331
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325
Query: 184 NFD 186
N D
Sbjct: 326 NLD 328
>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 331
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325
Query: 184 NFD 186
N D
Sbjct: 326 NLD 328
>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 216
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 115/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 31 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 90
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 91 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 150
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R +
Sbjct: 151 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 210
Query: 184 NFD 186
N D
Sbjct: 211 NLD 213
>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 326
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 114/181 (62%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A F P AL+++ R++RAG + + ++V + +DP+R EF+ +E + G+ ++
Sbjct: 146 KRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFGMGVT 205
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ + +++FF + +Q++ GGNL+E + N+S ++R+R +K ++Q LS E
Sbjct: 206 TALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVLSAEG 265
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AW++ LPF V+ ++ F +PGY+ +L DP G ++ A + +GI+V+R M+ +
Sbjct: 266 RMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKMVRIE 325
Query: 187 V 187
V
Sbjct: 326 V 326
>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 200
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 114/183 (62%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G
Sbjct: 15 LIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + ++ II ++PF ++ ++ + Y+++L GH +L +AA + IG+ ++R +
Sbjct: 135 AEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRKIA 194
Query: 184 NFD 186
N D
Sbjct: 195 NLD 197
>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
Length = 305
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 106/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR F P ALD I RS+RAG +S A+ +I + DP+ EF+ V + + G+
Sbjct: 124 KKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMNFGIPF 183
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E+ + + + ++SFF + +Q + GGNL+E L L+ +R+R ++ KV+ LS E
Sbjct: 184 KEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVRTLSSE 243
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SA ++GS+PF +T++ +P Y+ L N P+GH LL +A ML+G+ V+ M+
Sbjct: 244 GRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLNNMVKI 303
Query: 186 DV 187
V
Sbjct: 304 KV 305
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
LI KR ++F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G
Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
++ +++ + E FF +S+Q + GGNL+E L+NL+ +LR R MK K++A+
Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
S E+KASA+IIG LPF V ++ + + YM DP G ++G+ +M I
Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319
Query: 175 GIMVMRLMINFDV 187
G +M MINF++
Sbjct: 320 GAFIMAQMINFEI 332
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
LI KR +F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G
Sbjct: 140 RLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIKIG 199
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+
Sbjct: 200 KTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I
Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWMGI 319
Query: 175 GIMVMRLMINFDV 187
G +M MINF++
Sbjct: 320 GAFIMAQMINFEI 332
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
LIK R KF FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G
Sbjct: 140 RLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIKIG 199
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+
Sbjct: 200 KTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAM 259
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I
Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWMSI 319
Query: 175 GIMVMRLMINFDV 187
G +M MINF++
Sbjct: 320 GAFIMAQMINFEI 332
>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
Length = 217
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 115/185 (62%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +
Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R
Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209
Query: 182 MINFD 186
+ N D
Sbjct: 210 IANLD 214
>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
Length = 219
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 115/185 (62%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +
Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 92 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R
Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211
Query: 182 MINFD 186
+ N D
Sbjct: 212 IANLD 216
>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
Length = 330
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 115/185 (62%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +
Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R
Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322
Query: 182 MINFD 186
+ N D
Sbjct: 323 IANLD 327
>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
Length = 325
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 117/185 (63%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ LI + A+FL FP+ LD+I+R+VRAG+PV A++ ++ +PVRS FR + ++ L
Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L E + + V + + + SFF+ + +Q + GGNL E L NLS I+R R++++ K +A
Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + ++ II ++PF + +Y + Y+++L + GH +L +AA ++IG+ +++
Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 325
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 114/187 (60%), Gaps = 3/187 (1%)
Query: 4 LIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
L +KRT + L P+A D+I R++RAG A+ ++ + +P+ EF V + +
Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+S+S+++ MV +P++++ +F + +Q + GGNL+E L +++ I+R+R + KV+
Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E + SAW++G LPF + L+ +PGY++V DP G + GVA A ML GI+ MR
Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318
Query: 181 LMINFDV 187
++ V
Sbjct: 319 KVVRIRV 325
>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 324
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 106/181 (58%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR AKF + P+A+D++ R++RAG + ++ +I + SDP+ EFR + + G SL
Sbjct: 144 KRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYGFSLQ 203
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P ++ + + +Q + GGNL+E L N+S ++R R + ++ L+ E
Sbjct: 204 EAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEG 263
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SAWI+ LPF V+ +++ +PG+M VL D G M++ + ML GI MR +I
Sbjct: 264 KLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQIIKIQ 323
Query: 187 V 187
V
Sbjct: 324 V 324
>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 320
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R+ K + P AL+++ RS+RAG ++ A V+ G+ +PV EF R + Q LGLSL
Sbjct: 139 RRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLSLE 198
Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ M P +V F+ +Q + GGNL+E L +S +R R K++AL+ E
Sbjct: 199 QAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALTGE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASAW++G LPF V+ V +PGY+ L +P GH ++G A +GI+ +R +
Sbjct: 259 GRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLTQL 318
Query: 186 DV 187
++
Sbjct: 319 EI 320
>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
MSMB43]
Length = 328
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 114/185 (61%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ LI + +FL FP+A+D++VR+VRAG+PV A+ +S +PVRS F + + +
Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L E + + + + + SFF+ + +Q + GG+L+E L NLS I+R R++++ K +A
Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E K SA II ++PF + +Y + Y+ +L + GH +L +AA + +G++++R
Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320
Query: 182 MINFD 186
+ N D
Sbjct: 321 IANLD 325
>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
F D P ALD I RS+RAG ++ A+ ++ + DP+ EF+ V + G+ ++I
Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
+ + +++FF + +Q + GGNL+E L LS +R R ++ K++ LS E +ASAW
Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
++GS+PF + ++ +PGY++VL P GH L A M +G +++ ++NF V
Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322
>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 332
Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 108/182 (59%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+
Sbjct: 151 KQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIPF 210
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++I + + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E
Sbjct: 211 KDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSE 270
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASAWI+G++PF + ++ +PGY++VL + P+G L+ + M +GI V+ ++
Sbjct: 271 GRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQI 330
Query: 186 DV 187
V
Sbjct: 331 KV 332
>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 327
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 112/181 (61%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A F P AL+++ R+++AG S + ++V + ++P+R EF++ +E + G+ ++
Sbjct: 147 KRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFGMGVT 206
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E
Sbjct: 207 VALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEG 266
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AW++ LPF V V +PGY+N+L + G L + A M +G++V+R M+ D
Sbjct: 267 RMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKMVRID 326
Query: 187 V 187
V
Sbjct: 327 V 327
>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 326
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 112/181 (61%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR +F P ALD++ R++RAG + + ++V + ++P+ SEFR +E + G+ ++
Sbjct: 146 KRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFGMGVT 205
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E
Sbjct: 206 VALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVLSAEG 265
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AW++ LPF V V +PGY+ +L +P G +L+ V M +G++V+R M+ +
Sbjct: 266 RMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKMVRIE 325
Query: 187 V 187
V
Sbjct: 326 V 326
>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 329
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 112/182 (61%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+R P ALD+I R++RAG S + + + S+P+ EFR V + + G SL
Sbjct: 148 NQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEINYGTSL 207
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AK++ LS E
Sbjct: 208 QQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSE 267
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWI+G +PF ++ L+ F +P +M+ L DP G ++L A M+IG++++R ++
Sbjct: 268 GRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLRRIVRI 327
Query: 186 DV 187
V
Sbjct: 328 RV 329
>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 325
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 110/182 (60%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR K P+A+D+I R++RAG + A+ ++ + +P+ EF E + G+SL
Sbjct: 144 RKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVSL 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E+++ + + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E
Sbjct: 204 DEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAE 263
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWI+G LPFC + ++ +P +M VL DP G ++G+A M++G++ MR +I
Sbjct: 264 GRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIRI 323
Query: 186 DV 187
V
Sbjct: 324 RV 325
>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 317
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G S
Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKS 193
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+
Sbjct: 194 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 253
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++
Sbjct: 254 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313
>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 330
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 110/187 (58%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H +R A P+ALD++ R++RAG + +V +I + S+P+ EFR V +
Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+SL ++++ M +PL ++ +F + +Q GGNL+E L NLSR++RDR + A+V+
Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E + SAWI+G +PF + L+ +P +M+ L DP G + M+IG +++R
Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323
Query: 181 LMINFDV 187
++ V
Sbjct: 324 KIVKIRV 330
>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 235
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 116/177 (65%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LI++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +G
Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +AL+
Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
E + + II ++PF + ++ + Y+ +L GH +L +AAA ++IG++V+R
Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIR 226
>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 322
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 114/181 (62%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + F FP A++++ R++RAG S + ++ + +PV SEF + E G ++
Sbjct: 142 KRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYSFGKTME 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R ++ V+ALS E
Sbjct: 202 EALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEG 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ S WI+ +P + ++Y+++P Y+N+ + +P G +L A ++GI+V++ +I
Sbjct: 262 RLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIKQIIKMR 321
Query: 187 V 187
V
Sbjct: 322 V 322
>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 319
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G +
Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKN 195
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+
Sbjct: 196 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 255
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++
Sbjct: 256 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315
>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 320
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 110/180 (61%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R KF + P+A+D++ R++RAG +S A+ V+ +S++P+ EF V + Q GL +
Sbjct: 141 RLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQKFGLQFRD 200
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ ++ +P +++SF T I VQ + GG+L++ L +R++R+R ++ +++ + + +
Sbjct: 201 ALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGR 260
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+ WI+ +LP + L+ +PGY ++L +DP G +LLG +LIG ++ +++ V
Sbjct: 261 LTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIISRVVDIKV 320
>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 325
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 109/185 (58%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
HL KR + P+A+D+I R++RAG S A++++ + P+ EFR E + G
Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L
Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E K SAW++G LPF + ++ +PG+MNVL DP G ++G A M G++ MR +
Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320
Query: 183 INFDV 187
I V
Sbjct: 321 IRIRV 325
>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 325
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 107/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + P+ALD++ R++RAG A+ ++ + +DP+ EFR + + G+++
Sbjct: 144 RKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAM 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ M +P ++ +F + +Q + GGNLSE L ++S I+RDR + +V+ LS E
Sbjct: 204 PDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAE 263
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
K SAW++ LPF + ++ T+P ++ VL DP G +L A M +GI+VMR +I
Sbjct: 264 GKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKIIRI 323
Query: 186 DV 187
V
Sbjct: 324 RV 325
>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
Length = 320
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 107/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R AKF P+AL++I R++RAG + ++ +S DP+ EF +V E Q+LG+SL
Sbjct: 139 KARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLGVSL 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++I+ M +P ++ FF T I +Q Q GG+L+E L + R++R R + +QAL+ E
Sbjct: 199 EDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++ LP + ++ +PGY+ L DP G+ +L VA LIG V++ +I+
Sbjct: 259 GRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKIIDI 318
Query: 186 DV 187
V
Sbjct: 319 KV 320
>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 329
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 110/174 (63%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL
Sbjct: 149 QRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEINYGTSLH 208
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS +
Sbjct: 209 QALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADG 268
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+ SAWI+G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R
Sbjct: 269 RMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322
>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 324
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 108/181 (59%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KR KF P+ALD+IVRS+RAG P + A+ ++ + DP+ +EF V + GLSL
Sbjct: 143 NKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEITFGLSL 202
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ ++ + + + + S +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ALS E
Sbjct: 203 EQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAE 262
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWII P + ++ +P + + + P + + + L+G +M M+NF
Sbjct: 263 GRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMYRMVNF 322
Query: 186 D 186
D
Sbjct: 323 D 323
>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 325
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 106/181 (58%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + P+A+D+I R++RAG S A+ ++ + P+ EFR E + G++L
Sbjct: 145 KRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYGIALD 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + AK++ LS E
Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAW++G LPF ++ +P +M VL DP G ++G A M++G++ MR +I
Sbjct: 265 RMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 118/185 (63%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ +
Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 322
Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 107/181 (59%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KR KF P+ALD+IVRS+RAG P S A+ ++ + DP+ +EF V + GLS+
Sbjct: 141 NKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITFGLSI 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ ++ + + + + S +S+QS+ GGNL+E LANLS ++R+R+ ++ K++ALS E
Sbjct: 201 EQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWII P + + +P Y + ++P + + + L+G +M M+ F
Sbjct: 261 GRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYRMVTF 320
Query: 186 D 186
D
Sbjct: 321 D 321
>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 328
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A F + P+ALD + R++RAG P ++ + ++ + PV EF + G +
Sbjct: 148 KRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGNDVR 207
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ MP V T I + + GGNL+E L LSR++R R + K++ LS E
Sbjct: 208 RAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEG 267
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAW++ ++PF ++ + TSP YM VLINDP GH L+ A MLIGI ++ +I
Sbjct: 268 RMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIRIQ 327
Query: 187 V 187
V
Sbjct: 328 V 328
>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
Length = 323
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 109/180 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR KF P+ALD+IVRS+RAG P + A+A++ + DP+ +EF V + GLSL
Sbjct: 143 KRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEISFGLSLE 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ ++ + + + S +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ALS E
Sbjct: 203 QAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWII P + ++ +P + + +P + + ++ L+G +M M+NFD
Sbjct: 263 RMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMYRMVNFD 322
>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 118/185 (63%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ +
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 118/185 (63%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ +
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 329
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 108/173 (62%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL +
Sbjct: 150 RLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEINYGTSLQQ 209
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS + +
Sbjct: 210 ALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGR 269
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
SAW +G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R
Sbjct: 270 MSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322
>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 325
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 104/173 (60%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P+A D+I R++RAG + ++ + DP+ EF V + + G+S+++++ MV
Sbjct: 153 QLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALLNMVS 212
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P++++ +F + +Q + GGNL+E L ++S I+R+R + KV+ LS E + SAW++
Sbjct: 213 RVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSAWVLA 272
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
LPF + L+ +PGY++V DP G L GVA ML GI+ MR ++ +
Sbjct: 273 VLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325
>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 107/185 (57%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +R F D P ALD I R++RAG ++ A+ ++ + +P+ EF+ V + G
Sbjct: 138 QLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIGFG 197
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ E+I R+ M +++FF +++Q + GGNL+E L+R +R R ++ K++ L
Sbjct: 198 IPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTL 257
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E +AS W++GS+PF + ++ +P Y+++L RG+ L+ + A M +G +V++ +
Sbjct: 258 SSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLKRI 317
Query: 183 INFDV 187
+ V
Sbjct: 318 VQIKV 322
>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 325
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 116/185 (62%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L + ++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ +
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 325
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 107/173 (61%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P+ D++ R++R+G + A+ ++ + ++P+ EFR V + + G+S+SE+++ +
Sbjct: 153 QLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALTNLAT 212
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P++++ +F + +Q + GGNL+E L ++ ++RDR + KV+ LS E + SAW++G
Sbjct: 213 RVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSAWVLG 272
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
LPF V + +PG++NVL DP G ++ A+ ML GI+ MR ++ V
Sbjct: 273 LLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325
>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 322
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 106/184 (57%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+
Sbjct: 139 LADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIGFGI 198
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
E+I R+ + +++FF +++Q + GGNL+E L+R +R R ++ K++ LS
Sbjct: 199 PFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILS 258
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E +AS W++GS+PF + ++ +P Y+ L P+G+ ++ + A M +G +V++ ++
Sbjct: 259 SEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLKRIV 318
Query: 184 NFDV 187
V
Sbjct: 319 QIKV 322
>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
Length = 325
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 119/185 (64%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++++ +++PVR+ FR + ++ +
Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ E + + II ++PF + ++ + Y+ +L + G+ +L +AA + +G++V+R
Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317
Query: 182 MINFD 186
+ D
Sbjct: 318 ISKLD 322
>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 326
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + P+A D+I R++RAG A+ ++ + P+ EFR + + G+S++
Sbjct: 146 KRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEINCGVSMN 205
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ +V +P+ +V +F + +Q + GGNL+E L N++ I+R+R + AKV+ LS E
Sbjct: 206 DALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEG 265
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF V + +PGY V D G + GVA + M +G++ +R +
Sbjct: 266 RLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLRKTVRIR 325
Query: 187 V 187
V
Sbjct: 326 V 326
>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
Length = 325
Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 3/188 (1%)
Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E
Sbjct: 138 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 197
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
+ G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K+
Sbjct: 198 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKI 257
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ LS E + SAWI+G LPF + L+ +PG+M VL DP G ++G A M+ G++ M
Sbjct: 258 RVLSAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWM 317
Query: 180 RLMINFDV 187
R +I V
Sbjct: 318 RKIIRIRV 325
>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 330
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 109/181 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL
Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E
Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I
Sbjct: 270 KLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329
Query: 187 V 187
V
Sbjct: 330 V 330
>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
13177]
gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 325
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 109/181 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 324
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 115/187 (61%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ L +R +F P ALD++ R+++AG + ++ + +DP+ EF + ++ +
Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ + +++ + + ++++ FF +++Q + GGNL+E +AN++R++R+R + KV+
Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E + SA ++ +LPF ++ ++YF +P Y+++L + G + A A M++GI+VMR
Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317
Query: 181 LMINFDV 187
M+ V
Sbjct: 318 RMVKIQV 324
>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 321
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 109/182 (59%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+ R A F D FP+ L+ + RS+RAG S A+ + + SDP+ E RR E Q+LG L
Sbjct: 140 RMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQNLGQPL 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ ++ + +P +V FF + + +Q + GGNL+E L L++++R+R ++A+++A+S +
Sbjct: 200 EIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQ 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
S I+ ++P V+ +++ +P Y I+DP GH L+ L+G +++R ++ F
Sbjct: 260 GLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIRKIVTF 319
Query: 186 DV 187
DV
Sbjct: 320 DV 321
>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 330
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 109/181 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL
Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E
Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I
Sbjct: 270 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329
Query: 187 V 187
V
Sbjct: 330 V 330
>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 323
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR K P +D++ R+++AG S A+ + +P EFR + + G+S+
Sbjct: 142 RKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVSV 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P+ ++ +F + +Q + GGNL+E L +S ++R R + K++ LS E
Sbjct: 202 QDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAE 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWI+ LPF + ++ +PG++ VL DP G M++G A M+IGI VM +I
Sbjct: 262 GRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIKI 321
Query: 186 DV 187
V
Sbjct: 322 RV 323
>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 325
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 109/181 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 322
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 106/173 (61%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
FP ALD++ R++RAG AV ++ + +DP+ +FR + + + G+ +++++ +
Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P+ +VS+F + +Q + GGNL+E L +S I+R+R + +V+ LS E K SA I+
Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+LPF V +V +P +M VL DP G ++G+A ML+GI+ MR +I V
Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322
>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 325
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 109/181 (60%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 322
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 101/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R + F P ALDI+ R ++AG PV+ A + + + P+ EF+ + G
Sbjct: 140 ISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + F +PGY+ L DPRG L+ + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIRKIIN 319
Query: 185 FDV 187
F+V
Sbjct: 320 FEV 322
>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
Length = 320
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 105/182 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++RT +F + FP+AL I RS+RAG A+ ++ ++ PV FR E Q LGL +
Sbjct: 139 ERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQLGLRM 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + +
Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S +++ +LP + P Y LIN+P G +L AAA ++G +V+R ++
Sbjct: 259 GRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIRKIVRI 318
Query: 186 DV 187
+
Sbjct: 319 RI 320
>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
Length = 325
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 104/177 (58%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+ L E++
Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ LS E K SA
Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
WI+ LPF + L+ +P ++ VL DP G +L+GV M GI+ MR +I V
Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325
>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 322
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 100/171 (58%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F + P ALD + RS+RAG ++ A+ ++ + P+ EF+ V + G+
Sbjct: 142 KRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEISFGIPFK 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ R+ + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E
Sbjct: 202 EAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEG 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+ SA ++GS+PF ++ ++ +P Y +VL + P+GH L+ V A M +G
Sbjct: 262 RISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFF 312
>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
Length = 316
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 103/187 (55%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++HL R K P+AL I+ RS+ AG PV+ AV+++ + DP+ +EF +
Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+SL+ ++ RM +V F+ + +Q + GGNL+E L + + +R+R+ M+ KV+
Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A S E + SA I+ S PF V T ++ P + +I++P +M IG +VM
Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309
Query: 181 LMINFDV 187
MINF +
Sbjct: 310 RMINFKM 316
>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 325
Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + +A+D+I R++RAG S A+ ++ + P+ EFR E + G++L
Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E
Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SAW++G LPF + L+ +PG+M VL DP G ++G A M G++ MR +I
Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 314
Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 107/187 (57%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M +L ++R A F + P L+I+VRS+RAG P+ A + Q DP SE +
Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + ++ + R + +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R ++ +V+
Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS E + SA + PF ++ L+ +P Y + +P + L VA ++IG +V+
Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307
Query: 181 LMINFDV 187
++NF +
Sbjct: 308 RIVNFRI 314
>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 321
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 110/182 (60%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KF P ALD++ R+++AG S + ++ + DP+ EF + ++ + G+S+
Sbjct: 140 KQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEINFGVSV 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ + + ++S+F + +Q + GGNL++ +A+++ ++R+R + +++ LS E
Sbjct: 200 ADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASA I+ ++P V+ + S Y+ L +D G +L+G+A M+ G++VMR MI
Sbjct: 260 GRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMRKMIRI 319
Query: 186 DV 187
DV
Sbjct: 320 DV 321
>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 290
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 106/186 (56%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ + K+R KF + P+AL ++ +RAGL +S A+A +V +S P+ EF ++ Q L
Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G++L +++S + MP Q ++ + + ++ GG L+E L S +R R M+AK+ A
Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K AW++G+LP + ++ P M++L + G L V A F +G+ V+R
Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284
Query: 182 MINFDV 187
+I DV
Sbjct: 285 IIAIDV 290
>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
Length = 313
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 104/177 (58%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R A F P+ALD++ RS+RAG + ++ + P+ +EFR V+E G+S++E
Sbjct: 134 RRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVAFGVSVTE 193
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ R+ + ++FF T + +Q + GGNL+E L +SR+ R R + AKV+A+S E +
Sbjct: 194 ALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGR 253
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
SA I+ +LPF + L+ +P Y+ +L DP G ++ V MLIG +V + M+
Sbjct: 254 LSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTKRMVT 310
>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 328
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 106/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + F A+DI R++RAG PV+ A++++ + +DP+ +EF V + G +L
Sbjct: 147 EKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIAYGANL 206
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S+ + L+++ F+ +SVQS+ GGNL+E L NL+ ++RDR ++ KV+ALS E
Sbjct: 207 NDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALSSE 266
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASAW++ LP +++ +P + + DP LIG++ +R M++
Sbjct: 267 GRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLRSMVDL 326
Query: 186 DV 187
V
Sbjct: 327 KV 328
>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 321
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R+ + + P ALD++ RS+RAG + A V+ + +PV EF R E+Q LGL +
Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199
Query: 67 ESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++I +M P +++ F+ +Q + GGNL+E L +++ +R R +K+ AL+ E
Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+AS I+G LP ++ ++ +P YM L++DP GHM++ AA L+G+ + +
Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319
Query: 186 DV 187
D+
Sbjct: 320 DL 321
>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
bermudensis HTCC2601]
gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. HTCC2601]
Length = 321
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 105/182 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P S A+AV+ + DP+ +EF + + G +
Sbjct: 140 KKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRDI 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ES+ M + +Q++ F + +S+Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P V ++ T P Y + +++ P + A F+ + +MVMR+++N
Sbjct: 260 AQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVNI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 321
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+R A F P AL++I R++RAG ++ ++ + P+ EF R E Q+LG+ L
Sbjct: 140 NRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVPL 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E+I M +P ++ FF+T + +Q Q GG+L+E L + ++R+R + ++QAL+ E
Sbjct: 200 EEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++ +LP + +++ + Y L DP GH +L A LIG +V+R ++N
Sbjct: 260 GRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVNI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
Length = 324
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
+F P ALD++ R++RAG A+ ++ + DP+ EFR + + + G+ ++
Sbjct: 148 RFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYGVPQQTAML 207
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ ++S+F + +Q GGNL+E L N+S+I+R R + +++ LS E K SA
Sbjct: 208 NLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSA 267
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
WI+G LPF + L+ +PG+M VL DP G + A M++G++ MR +I V
Sbjct: 268 WILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKIIRIRV 324
>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 319
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 98/178 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R L+ FP+AL IVR VR G+PV +A+ V+ P EF R+ + +G L
Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ +M L E FF+T IS+Q++ GG L++ L L+ ++R R MKA+ AL+ EA
Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ SA I+G +P + + P Y+ VL G+++L A + G +VMR +I
Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315
>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 322
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 105/182 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR P+ALD++ R++ AG A+ ++ + +P+ SEFR V + + G+
Sbjct: 141 QKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIPT 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
SE++ +++ +P +VS+F + +Q + GGNL+E L N+S ++R R + V+ LS E
Sbjct: 201 SEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAWI+ LPF + ++ +P ++++L DP G ++ +A M+ GI VM +I
Sbjct: 261 GRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIKI 320
Query: 186 DV 187
V
Sbjct: 321 RV 322
>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 324
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 106/183 (57%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+++RT F D +AL +I S+R G ++ ++ + P+ +EF RV+ +LG++
Sbjct: 142 VERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMNLGVT 201
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
E+++ + + + ++ T + +Q Q+GGNL+E L N++ +R R +K +++ L+
Sbjct: 202 TEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIKTLTA 261
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ + S IIG LP + ++Y +PGYM +L P G L+ A LIG++++R ++N
Sbjct: 262 QGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIRRIVN 321
Query: 185 FDV 187
DV
Sbjct: 322 IDV 324
>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 321
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 108/181 (59%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+
Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E
Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M
Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320
Query: 187 V 187
V
Sbjct: 321 V 321
>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
Length = 321
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 108/181 (59%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+
Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E
Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M
Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320
Query: 187 V 187
V
Sbjct: 321 V 321
>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 320
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR+AK + P ALD++ RS+RAG V+ A V+ + +P+ EF R E Q LGL+L
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198
Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASA I+G+LPF V+ + +P Y+ VL RG M++ A+ ++G++ + +
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318
Query: 186 DV 187
D+
Sbjct: 319 DL 320
>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 319
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 103/179 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K +F+D FP+A+D + R +RAGLP++ AV I ++ P+ + F + + +G+ +
Sbjct: 136 RKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELKIGVPI 195
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + + L + FF+ +++Q GGNL L LS+I+R R+ ++ K +A + E
Sbjct: 196 EQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAKAATGE 255
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ +A+ +G +P S ++ PGY+ L DPRG ++L A + + + MR+++
Sbjct: 256 IRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMRMIMR 314
>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 321
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + F + P+AL +I RS+RAG ++ AV ++ ++ +P+ FR E Q LGL +
Sbjct: 139 KKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQKLGLRI 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ M++ M ++ FF TVI++ ++ GGNLSE L L+ +R+R ++ +VQ + +
Sbjct: 199 TDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQ 258
Query: 126 AKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+ S +I+ +LP F L Y PGY +V + + +GH + A +IG +
Sbjct: 259 GRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFL 311
>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
Length = 321
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 99/183 (54%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I KR + FP ALDI+ R ++AG SD++ ++ + + EF+ + + G
Sbjct: 139 INKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRINFGND 198
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ V+ +P F + +S+ + GGNL+E + NLSRI+R R K +V+ LS
Sbjct: 199 VHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSA 258
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E + S W++ PF + ++Y +SP Y ++LIN P G LL ML+GI + +I
Sbjct: 259 EGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWISKLIK 318
Query: 185 FDV 187
+V
Sbjct: 319 IEV 321
>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 324
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 107/187 (57%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ +KR F + F ALD++ R++ G P ++ + + + PV EF + +
Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+
Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + A ML+G++ +R
Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317
Query: 181 LMINFDV 187
++ +V
Sbjct: 318 KILRIEV 324
>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 322
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 101/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + + G
Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + +PGY+ L DPRG L+ + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIRKIIN 319
Query: 185 FDV 187
F+V
Sbjct: 320 FEV 322
>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 320
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR+AK + P ALD++ RS+RAG V+ A V+ + +PV EF R E Q LGL+L
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198
Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASA I+G+LPF V+ + +P Y+ VL +G M++ A+ ++G++ + +
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318
Query: 186 DV 187
D+
Sbjct: 319 DL 320
>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
Length = 322
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 102/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G
Sbjct: 140 ISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + +P Y+ L DPRG L+ + IG M +R +IN
Sbjct: 260 ESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIRNIIN 319
Query: 185 FDV 187
F+V
Sbjct: 320 FEV 322
>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 320
Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 104/182 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R+ KF + FP+AL I RS+RAG A+ ++ + PV F+ E Q LGL +
Sbjct: 139 ERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQLGLRM 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + +
Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S +++ +LP + +P Y LI +P G +L AAA +IG +V+R ++
Sbjct: 259 GRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIRKIVRI 318
Query: 186 DV 187
+
Sbjct: 319 RI 320
>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 322
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 99/183 (54%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + G
Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + +PGY+ L DPRG L+ + G + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIRKIIN 319
Query: 185 FDV 187
F+V
Sbjct: 320 FEV 322
>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 339
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 108/186 (58%), Gaps = 1/186 (0%)
Query: 3 HLIKK-RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
H+ KK R KF P AL ++ RS++AG + ++ + +P+ EF + + +
Sbjct: 154 HMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFNY 213
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL +S +++ + + + LQ++ FF T I++Q + GGNL E L ++ ++RDR + ++A
Sbjct: 214 GLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKA 273
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ E + S I+ LP ++ ++YF + YM +LI P G M++GVA L+G +++
Sbjct: 274 ITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIHK 333
Query: 182 MINFDV 187
++N V
Sbjct: 334 IVNIKV 339
>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 321
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 106/187 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++
Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E++ SAWI+ PF + + F +P Y+ L +DPRG ++ + + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314
Query: 181 LMINFDV 187
+IN ++
Sbjct: 315 KIINIEI 321
>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 321
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 105/174 (60%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R KF + FP+AL +I RS+RAG + A+ ++ + +DPV F+ E Q LGL
Sbjct: 139 IRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQLLGLR 198
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++E+++ + + ++ FF+T I++ + +GGNLSE L NL++ +R+R ++ +V+ +
Sbjct: 199 ITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVRVYTA 258
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
+ + + +++G+LP + +P Y +VL + +G +L A ++G+ V
Sbjct: 259 QGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312
>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 313
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 111/180 (61%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++HL ++R A+F P+AL ++ ++RAG + A+ V+ + P+ EF R +
Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ + E++ R+ +P ++ T + +Q Q+GGNL+E L N++ +R+R +K +++
Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ + + SA IIG LP ++ ++ +P Y+ LI +P G ++LG+ AA ++G++++R
Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306
>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 321
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 102/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G
Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S
Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + ++ PGY++ L DPRG ++ + +G + MR +IN
Sbjct: 259 ESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMRHIIN 318
Query: 185 FDV 187
F+V
Sbjct: 319 FEV 321
>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
Length = 325
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 105/185 (56%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H +R K P+ D I R++RAG S A++++ G+ ++P+ EFR + + G
Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E K SA I+ LPF + L+ +P ++ VL DP G +L+G+ A M GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320
Query: 183 INFDV 187
I V
Sbjct: 321 IRIRV 325
>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 325
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF + P+A+D+ R++RAG + + I ++SDPV+ EF++++E LG +
Sbjct: 145 RRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALGSQVE 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + + +PL ++ FF T + +Q Q G N+ L NLS ++R+R NM AK++A + +
Sbjct: 205 PALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQ 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SA ++ LP V + P Y+ +L DP G A +GI+V+R + N
Sbjct: 265 RFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKIANIK 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
Length = 321
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G
Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S
Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + PGY++ L DPRG L+ + +G + MR +IN
Sbjct: 259 ESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMRHIIN 318
Query: 185 FDV 187
F+V
Sbjct: 319 FEV 321
>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 323
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + FP +LD + RS+RAG S ++ ++ + +DP+ EFR + Q+LG L
Sbjct: 143 KRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQNLGAPLD 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R +K +V+A S
Sbjct: 203 TALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A I+ LP + +PGY+ + +D G L+G A ++G ++ +IN
Sbjct: 263 RLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIKRIINIK 322
Query: 187 V 187
V
Sbjct: 323 V 323
>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 333
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
FP ALDI VR +R+G P+ A+ ++ + DP+ +EF V + GL L E+++RM
Sbjct: 160 QQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALARMA 219
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
L ++ F +SVQ + GGNL+E L NLS+++RDR +M KV+ALS E + +A I+
Sbjct: 220 ERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAVIL 279
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+LP ++ T+P + + DP + G L+G +R MI+ V
Sbjct: 280 TALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333
>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 321
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 106/187 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ + R A+F + P ALDII R+++AG P+ + + + DP+ +EF+ +
Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++
Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E++ SAWI+ PF + + +P Y+ L NDPRG ++ V + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314
Query: 181 LMINFDV 187
+I+ ++
Sbjct: 315 RIISIEI 321
>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 321
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 101/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+ R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + G
Sbjct: 139 VTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLNYGYD 198
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS
Sbjct: 199 LRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSA 258
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + F +P Y+ L DPRG ++ + + IG + +R +IN
Sbjct: 259 ESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIRKIIN 318
Query: 185 FDV 187
++
Sbjct: 319 IEI 321
>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 321
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 102/173 (58%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R +F P+ALD+I R+++AG + + ++ + +DP+ EF++ ++ + G+
Sbjct: 142 RMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEINFGIPADA 201
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ + R + ++ FF +++Q + GGNL+E + N++R++R+R + +V+ LS E +
Sbjct: 202 ALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGR 261
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+AWI+ LPF + ++ +P +M+ L P G+MLL + M IG + ++
Sbjct: 262 LTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314
>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 322
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 102/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R A F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G
Sbjct: 140 ISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + F +P Y+ L DPRG L+ + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIRNIIN 319
Query: 185 FDV 187
F+V
Sbjct: 320 FEV 322
>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
Length = 325
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 105/178 (58%)
Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
A+F D P ALD++ R++R+G ++ + ++ + P+ SEF ++ +LGL+ E+
Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207
Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
+ +P ++ FF+ + +Q + GGN++E L ++SR++R+R K +V+AL+ E + S
Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267
Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
A ++ LP + ++F + Y+++L +P G +L A ++G +++ ++ ++
Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIEL 325
>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
Length = 325
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E
Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I
Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 288
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 106/187 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ +KR F + F ALD++ R++ G P ++ + + + P+ EF + +
Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+
Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + M++G++ +R
Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281
Query: 181 LMINFDV 187
++ +V
Sbjct: 282 KILRIEV 288
>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 324
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 95/181 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K + FP ALDI+ R ++AG DA+ + + P+ EF+ + + G
Sbjct: 144 KRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEINYGKDTR 203
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + +P FST + VQ + GGNL+E L NL+RI+R R + +V+ S +
Sbjct: 204 RALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQG 263
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAW++ +P + +Y +SP Y L + G+ LL +A MLIGI + +I +
Sbjct: 264 RMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWISRLIRIE 323
Query: 187 V 187
V
Sbjct: 324 V 324
>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
Length = 325
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E
Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I
Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 321
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R +F P+ALD+I R+++AG + ++ + +DPV EF+ ++ + G+S
Sbjct: 141 RRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGVSPD 200
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ M R + ++ FF +++Q + GGNL+E ++ ++ +LR+R + +V+ LS E
Sbjct: 201 AALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEG 260
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +AWI+ +LPF + +++ +P +M+ L P G+MLL + M G + ++ +
Sbjct: 261 RLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLTTIR 320
Query: 187 V 187
V
Sbjct: 321 V 321
>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
Length = 321
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 105/182 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + + P+A++++VRS+R G P S A++V+ + DP+ +EF + + G +
Sbjct: 140 RKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRDI 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ES+ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P V ++ T P Y + +++ P + A F+ + ++VMR+++N
Sbjct: 260 AQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVNI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 322
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R A + P+A++++VRS+R G P S A+ ++ + +DP+ +EF + + G +
Sbjct: 141 KQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E++ + M +Q++ F + +S+QSQ GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 TEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + PF + P Y + + P V A F+ I I+ M++M+N
Sbjct: 261 AKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMKMMVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 327
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+
Sbjct: 147 KRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P++++ FF + +Q + GGNL+E L ++ ++R+R + +V+ LS E
Sbjct: 207 EALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWIIG LPF + + +P +++VL DP G ++ M+ G++ MR ++
Sbjct: 267 RLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRIVRIR 326
Query: 187 V 187
V
Sbjct: 327 V 327
>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 322
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 2/182 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P S AV ++ + DP+ +EF + + G +
Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESAYGRDVG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N
Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 327
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+
Sbjct: 147 KRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + +V+ LS E
Sbjct: 207 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWIIG LPF + + +P +++VL DP G L+ M G++ MR ++
Sbjct: 267 RLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRIVRIR 326
Query: 187 V 187
V
Sbjct: 327 V 327
>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 325
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 105/181 (58%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
Length = 321
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 100/180 (55%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R A+F + P ALDII R+++AG P+ + + + DP+ EF+ + G L
Sbjct: 142 RMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLNYGYDLRL 201
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS E++
Sbjct: 202 AILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESR 261
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
SAWI+ PF + + SP Y+ L DPRG ++ V + IG + ++ +I+ ++
Sbjct: 262 LSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIKKIISIEI 321
>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 325
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + + P+A+D I RS RAG+PV++ + S P+ +EFR + LG+
Sbjct: 143 LQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKLGVP 202
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LR R+ + KVQ+ +
Sbjct: 203 LRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQSKTS 262
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ +L P C+ + Y SP + L NDP G +L A + +G+++ LM+
Sbjct: 263 EARASAKIVAALFPGCLGYM-YLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHLMV 321
Query: 184 N 184
Sbjct: 322 K 322
>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 327
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R KF P+ALD++ R+++AG + ++ + DP+ EF +V+E + G+ + E
Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206
Query: 68 SISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + R+ ++ FF+ + +Q + GGNL+E L +++RI+R+R + ++ LS E
Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SA I+ ++PF V+ + +P Y+ VL DP G L + M +GI +M+ I
Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326
Query: 187 V 187
V
Sbjct: 327 V 327
>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 323
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 101/181 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR KF + P ALDI+ R+++AG P + + V + DP+ EFR + G+++
Sbjct: 143 KRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMNIK 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+ +++ +P + T + VQ GGNL+E L ++ ++R R + KV+ + E
Sbjct: 203 TAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ +PF +S ++ +P Y+ +L+ +P G L+ +A +++G+ MR +I D
Sbjct: 263 RLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIRID 322
Query: 187 V 187
V
Sbjct: 323 V 323
>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 323
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 106/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + +LG
Sbjct: 142 QKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMNLGTQA 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + + ++ T + +Q Q+GGNL+E + N++ +R+R +K +++ L+ +
Sbjct: 202 EEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQ 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++IG LPF ++T++ SP Y+ L N G +++G+A +IG+M ++ ++N
Sbjct: 262 GRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIKKIVNI 321
Query: 186 DV 187
+V
Sbjct: 322 EV 323
>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 322
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 101/181 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P AL+II +RAG A+AV+ + P+ EF RV+ LG S+
Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ M +++ T + +Q Q+GGN++E L + +R+R +K +++AL+ +
Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SA II LP V+ L+ +P YM L+ +P G M+L +A ++GIM++R ++ +
Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321
Query: 187 V 187
V
Sbjct: 322 V 322
>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 326
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ +
Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G++V +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHVMV 322
Query: 184 N 184
Sbjct: 323 K 323
>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 321
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 101/187 (54%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ I R +F + P+ALDII R ++AG PV+ A + + + P+ EF+ +
Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + +I +M P + FS+ + +Q + GGNLSE L + ++LR R + K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+S E++ SAWI+ PF + + F +P Y+ L D RG L+ + + G + +R
Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314
Query: 181 LMINFDV 187
+INF+V
Sbjct: 315 NIINFEV 321
>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 325
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF + ++ + ++ VL DP G ++G ML G+ +R ++
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 327
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 105/187 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ KKR KF + ++L II S++AG A+ ++ + P+ E RV++ +
Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S ++++ + + ++ T + +Q Q+GGNLSE L N+S +R+R +K ++Q
Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ + + S IIG LP + +++ SP YM L P G ++GV ++G ++++
Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320
Query: 181 LMINFDV 187
+I+ +V
Sbjct: 321 KIIDIEV 327
>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 322
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 103/186 (55%), Gaps = 8/186 (4%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKRTA+ + P+A++++VRS+R G P S A++++ + SDP+ +EF + + G L
Sbjct: 141 KKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGREL 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E L LS+++R R + +V+A++ E
Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181
AK S + P + P Y ++ H AA F+++ ++VMR
Sbjct: 261 AKWSGNFLSGFPLMALIGIQLIDPNYY----DEAMEHAFFIPAAITVGVFLVLNLIVMRG 316
Query: 182 MINFDV 187
++N V
Sbjct: 317 LVNIKV 322
>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 321
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 102/187 (54%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ +
Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R
Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314
Query: 181 LMINFDV 187
+I+F+V
Sbjct: 315 KIISFEV 321
>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 232
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + G
Sbjct: 50 IADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLNYGYD 109
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ LS
Sbjct: 110 MRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSA 169
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R +I+
Sbjct: 170 ESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIRKIIS 229
Query: 185 FDV 187
F+V
Sbjct: 230 FEV 232
>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
Length = 321
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L
Sbjct: 140 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E
Sbjct: 200 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I
Sbjct: 260 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
Length = 322
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 103/182 (56%), Gaps = 2/182 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G +
Sbjct: 142 KRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESAYGRDVG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N
Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 325
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K P+ D+I R++R+G + + ++ + +P+ EFR + + G+SL
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
Length = 347
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L
Sbjct: 166 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 225
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E
Sbjct: 226 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 285
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I
Sbjct: 286 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 345
Query: 186 DV 187
V
Sbjct: 346 KV 347
>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 323
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 91/147 (61%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R F D P LD+I S+R G + ++A + G +P+R+E RRV + LGLS+
Sbjct: 142 QRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQLGLSI 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++
Sbjct: 202 TQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSM 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ S+++IG+LPF ++ +++ +P YM
Sbjct: 262 QRISSYVIGALPFALALIIFTINPTYM 288
>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 311
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 100/182 (54%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KF +AL I+ S+RAG A+A I DP+ EF +V LG ++
Sbjct: 130 KQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVELGENI 189
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+S++ + M +E+ +T +S+Q Q+GGNL++ L N+ +R+R ++ ++AL+ +
Sbjct: 190 EKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIKALTAQ 249
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
SA +I LP V L+ + YM + P G+ LLGV+A ++G +++ + N
Sbjct: 250 GDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIKKITNI 309
Query: 186 DV 187
++
Sbjct: 310 EM 311
>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 320
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 102/185 (55%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H KR + + P+A++++VRS+R G P S+A++++ + DP+ SEF + + G
Sbjct: 136 HKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAAYG 195
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A+
Sbjct: 196 RDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAI 255
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EAK S + P ++ P Y + + + P + F+++ + VMR++
Sbjct: 256 TAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMRIL 315
Query: 183 INFDV 187
N V
Sbjct: 316 TNIKV 320
>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 321
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 103/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR +F P+A++++ R++R+G ++ + ++ + P+ FR ETQ+LG+ +
Sbjct: 140 KKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQNLGVPV 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ ++ MP + FF T +++Q Q GG+L+E L +S ++R+R + VQAL+ E
Sbjct: 200 ESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S ++ ++P + VY+ +P Y+ VL G ++ V ++G + ++ +I+
Sbjct: 260 GRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIKKIIDI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 293
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 100/180 (55%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R + ++ P LD VRS+++G ++DAV + S+DP++S R+ LG+
Sbjct: 111 LYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLGV 170
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+L +++S + E+ F+ + V + GGN SE L NL +++R+R+ ++ A++
Sbjct: 171 NLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAMT 230
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E + +AW++G+LP + T+PGYM + +D G +L A + G + + M+
Sbjct: 231 GETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRML 290
>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 326
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ +
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322
Query: 184 N 184
Sbjct: 323 K 323
>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 326
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ +
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322
Query: 184 N 184
Sbjct: 323 K 323
>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
Pf0-1]
Length = 293
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + ++ P LD VRS+++G ++DAV + S DP++ RV LG+SL
Sbjct: 113 QRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLGVSL 172
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ + E+ F+ + V + GGN SE L NL R++R+R +++A++ E
Sbjct: 173 PEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAMTGE 232
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +AW++G LP ++ ++P Y+ + ND G M+L A +IG +++ M+
Sbjct: 233 TRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRML 290
>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 326
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKLGIP 203
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ +
Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ L P C++ L Y SP + L +DP G +L A + +G+++ +M+
Sbjct: 264 EARASAKIVAMLFPGCLAYL-YMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322
Query: 184 N 184
Sbjct: 323 K 323
>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 326
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ +
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263
Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHVMV 322
Query: 184 N 184
Sbjct: 323 K 323
>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 325
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL
Sbjct: 145 RRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 325
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+ D+I R++R+G + A+ ++ + SDP+ EFR + + G+SL
Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P++++ +F + +Q + GGNL+E L +++ ++R+R + K++ LS E
Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAW++G LPF + + +P ++ VL D G ++ M G++ MR +I
Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
Length = 325
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR DFP+ LD+I R+++AG +DA+ + + P+ EF+ + + +
Sbjct: 145 KRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E
Sbjct: 205 RALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ LPF + ++Y +P Y+ L GH LL A M IG + +I D
Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWISRIIKID 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 316
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 103/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR F + P+A+ ++ RS+RAG ++ AV +I + +P+ F+ E Q LG+ +
Sbjct: 135 KKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQKLGVRI 194
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S+ + + Q+ +FF TV + S+ GGNLSE L L+ LR R ++ +V+ ++ E
Sbjct: 195 ADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAE 254
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S +++ +LP + +Y PGY++V ++LG A ++G ++R ++N
Sbjct: 255 GRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIRKIVNI 314
Query: 186 DV 187
+
Sbjct: 315 SI 316
>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 325
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 102/181 (56%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K P+ D+I R++R+G + + ++ + DP+ EFR + + G+SL
Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P+Q++ +F + +Q + GGNL+E L +S ++R+R + KV+ LS E
Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 325
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 101/177 (57%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL +++
Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E + SA
Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
WI+G LPF + L+ + +++VL DP G + G M+ G+ MR +I V
Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325
>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
Length = 322
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 97/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G +
Sbjct: 141 KKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P V + P Y + +I+ P + + I VMR + N
Sbjct: 261 AQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMRKLTNI 320
Query: 186 DV 187
V
Sbjct: 321 QV 322
>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 323
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 99/176 (56%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
F+ P LD++ RS++AG + + + + DP+ EF ++ + G+ + +++ +
Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
M + +++FF + +Q + GGNL+E + +++ ++R+R KV+AL+ E S W
Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
++ LPF + ++ F +P Y+ +L + GH+++ A M+IG MR ++ DV
Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323
>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
Length = 317
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 103/180 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R F P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L
Sbjct: 137 RRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYGVTLD 196
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A + PF + ++ SP Y + + + G L+ A M IG +++ M+NF+
Sbjct: 257 RITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKMVNFE 316
>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 292
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+++ + ++ P LD VRS++AG +SDAV V + +P+RS RV LG+ L
Sbjct: 112 RRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQLGVPL 171
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++S + E+ F+ + + + GGN SE + NL +++R+ + +++A++ E
Sbjct: 172 DDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLRAMTGE 231
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +AWI+G+LP + F +PGY+ + D G M+L A A +G +V+ M+
Sbjct: 232 TRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLWRMM 289
>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 333
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 4/189 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+
Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178
ALS E + +A ++ +LP ++ +P + + D ++G LIG
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDS--MFIIGFVGLIVLYLIGFFT 324
Query: 179 MRLMINFDV 187
+R M++ V
Sbjct: 325 IRRMVDLKV 333
>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
Length = 317
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 103/180 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L
Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYGVTLD 196
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + +++++ + +SVQ+ GGNL E L NLS+ LR R +KAKV+A+S E
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEG 256
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A + PF + ++ SP Y + L + G ++ V M IG +++ M+NF+
Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKMVNFE 316
>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 319
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K + +R A P AL+IIVRS+ AG PV A+A++ + SDPV +EF +
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G +L ++I RM +V F+ + +Q + GGNL+ L + +R+R M+ K++A
Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMVMR 180
S E +ASA I+ + PF ++ SP + +I++P LLG+ ++ IG +VMR
Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGL-TVWVGIGNLVMR 312
Query: 181 LMINFDV 187
MI+ +
Sbjct: 313 RMIDMKL 319
>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
Length = 293
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 102/183 (55%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L ++R + ++ P LD VRS++AG ++DAV + S +P+RS RV
Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++
Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ E + +A I+G+LP C+ +P Y+ + D G M+L +A A ++G +V+
Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287
Query: 181 LMI 183
M+
Sbjct: 288 RMM 290
>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 327
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 103/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR P A D+I R++RAG S A+ ++ + ++P+ EFR V + + G++L
Sbjct: 146 RKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYGVTL 205
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E++ + +P+ ++ +F + +Q + GGNL+E L +++ ++R R + KV+ LS E
Sbjct: 206 NEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVLSAE 265
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S WI+ LPF + + +P + +VL DP G ++ M++GI+ MR ++
Sbjct: 266 GRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRIVQI 325
Query: 186 DV 187
V
Sbjct: 326 RV 327
>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 336
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 107/182 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R + P A+D++ ++ AG ++ A+ + + S+P+ E +V+ Q LGLS
Sbjct: 155 KRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGLSQ 214
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ RM+ P +++ T I++Q ++GG+L+ L ++S +R+R +K +++ L+ +
Sbjct: 215 EEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQ 274
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SA+I+ ++PF ++ +++ + Y+ L G ++L VA A +++G +MR +I
Sbjct: 275 GRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRIIAI 334
Query: 186 DV 187
V
Sbjct: 335 KV 336
>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 333
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 89/151 (58%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+
Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
ALS E + +A ++ +LP ++ +P +
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAF 297
>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 327
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
++ + K +F + P A+D IVR V+AG+P ++A +I P+ E + + L
Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GLSL +++ +PL E FF+ ++ + + GG LS+ L LS LR+R+ + K++A
Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
+ E +ASA I+ L +YF SP L++DP G+ +L A +L G+ +
Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320
Query: 182 MI 183
MI
Sbjct: 321 MI 322
>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
HTCC2083]
gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 322
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 103/187 (55%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H KKR + + P+A++++VRS+R G P S AV ++ + DP+ SE + +
Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + E++ M + Q++ F + +++Q Q GGNL+E LA L++++R R + +V+
Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ S + S P + P Y + +++ + AAF+ + ++VMR
Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315
Query: 181 LMINFDV 187
+++N V
Sbjct: 316 ILVNIKV 322
>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
Length = 319
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 102/180 (56%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R F P+A++++ R++RAG ++ + V+ + P+ EF RV E Q+LG+ L E
Sbjct: 140 RLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQNLGIPLEE 199
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ M +P ++ FF T +++Q Q GG+L+E L + I+R+R + +V+AL+ E +
Sbjct: 200 ALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGR 259
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
S ++ +LP + ++ +T P Y+ +L D G + A MLIG ++ +++ V
Sbjct: 260 LSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIKKIVDIKV 319
>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315
>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
Length = 325
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 101/181 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K P+ D+I R++R+G + + ++ + DP+ EFR + + G+ L+
Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+G LPF ++ + +++VL DP G ++G M G++ +R ++
Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324
Query: 187 V 187
V
Sbjct: 325 V 325
>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 329
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
++ + K +F + P A+D IVR RAG+PVS+A ++ P+ EF V + L
Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L +++ + +PL E FF ++ + + GG LS+ L L+ LR+R+ + K++A
Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
+ E +ASA I+ SL +Y SP L+ND G+ +L A +L+G+ +
Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322
Query: 182 MIN 184
MI
Sbjct: 323 MIK 325
>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 322
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 101/182 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P S AVA++ + DP+ +E + + G +
Sbjct: 141 KKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRDM 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ES+ +M M +Q++ F + +++Q+ GGNL+E L LS+++R R + +V+A++ E
Sbjct: 201 GESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + P ++ P Y + + V AAF+++ ++VMR ++N
Sbjct: 261 AKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVNI 320
Query: 186 DV 187
V
Sbjct: 321 QV 322
>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
Length = 323
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 101/182 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + P+A++++VRS++ G P S A+A + +S DP+ +EF + + G +
Sbjct: 142 KKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGEI 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S+ M + +Q++ F + V+ +Q++ GGNL+E L L+ ++R R + KV A++ E
Sbjct: 202 TDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAE 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + + + P + T P + + ++ + V A ++I I+ MR+M N
Sbjct: 262 AKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTNI 321
Query: 186 DV 187
V
Sbjct: 322 KV 323
>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 323
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 104/181 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF P+AL+++ R++R+G +S ++V+V + P+ +EF E Q+LG+ +
Sbjct: 143 RRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQNLGIPIG 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M+ MP ++ FF T + +Q Q GG+L+E L + I+R R + +VQAL+ E
Sbjct: 203 EALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ S ++ +LP + VY+ +P Y+ +L D G ++ ++G + ++ ++N
Sbjct: 263 RISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIKKIVNIK 322
Query: 187 V 187
+
Sbjct: 323 I 323
>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 319
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 102/187 (54%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ KR KF D +AL I+ S+RAG A+ + + P+ +EF R ++
Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG E+++ M + ++ T +++Q Q+GGNL+E L N+ + +R MK +++
Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ + + S I+ LP + ++ +P Y+ +L P G +L+G A LIGIM+++
Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312
Query: 181 LMINFDV 187
+IN ++
Sbjct: 313 KVINIEL 319
>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 317
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 105/180 (58%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L
Sbjct: 137 RRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLD 196
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+A+S E
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEG 256
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A + PF + ++ SP Y + + G +++ V A M IG +++ M+NF+
Sbjct: 257 RITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKMVNFE 316
>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
Length = 322
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 2/188 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +I +M P + FS+ + +Q + GGNL E + LSRILR R + K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179
+S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + +
Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMIS-LFIGTLWI 314
Query: 180 RLMINFDV 187
R ++N +V
Sbjct: 315 RKIVNIEV 322
>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 335
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 104/176 (59%), Gaps = 4/176 (2%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
+F D P LD+I S+R G + ++A + +P R+E RRV + LGLS+++++
Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ + S+
Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMIN 184
++IG+LPF ++ +++ +P YM L G +L AF+ ++G +++R +++
Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQP--GLILCIPIGAFISSVVGFLIIRKIVD 332
>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
LS E + SAWI+G LPF + ++ + +++VL DP G ++G M +G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLL 315
>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 104/180 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R +F P AL++I R ++AG PV A+A++ + DP+ +EF + + G L
Sbjct: 140 KRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDL 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E
Sbjct: 200 VSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SA+I+ ++P + + PG+ + ++P+ L+G + ++++G ++M M NF
Sbjct: 260 GRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 319
>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 310
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 95/182 (52%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L KR A+F + L ++ +RAG + A+ +S P E RRVI LG
Sbjct: 127 LAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETSLGR 186
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L S++ M ++ + + I + ++GGNL+E L ++ +R+R +K ++AL+
Sbjct: 187 DLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALA 246
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E K SA+I+ ++P + ++ +PGYM+ + P G ++ + FM IG + MR +I
Sbjct: 247 AEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMRKII 306
Query: 184 NF 185
+
Sbjct: 307 DL 308
>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 331
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ ++ KKR F P AL++ R++RAG + + ++ + + P+ EF RV E Q+
Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ + E++ M +P +V FF T + +Q Q GG+L E L +S ++R R +K +V
Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMVM 179
AL+ E + S ++ ++P + ++ T+ Y+ L DP G +L AA ++G + +
Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323
Query: 180 RLMINFDV 187
R +++ V
Sbjct: 324 RKIVDIKV 331
>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 322
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 98/181 (54%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G +
Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K S + P + P Y N + + V F+++ ++VMR ++N
Sbjct: 262 KWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMRALVNIK 321
Query: 187 V 187
V
Sbjct: 322 V 322
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M+H +R K P+ D+I R++R+G S A+ ++ + +P+ EFR + +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315
>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 283
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 100/186 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L K+R KF+ P+AL++I S+++G VS+A+ + + P++ EF+ + Q L
Sbjct: 98 QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ + ++ M + +P +E + + + ++GGNL+E L LS LR + M+ K+ A
Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R
Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277
Query: 182 MINFDV 187
++ DV
Sbjct: 278 IVAIDV 283
>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
Length = 317
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 103/180 (57%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L
Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYGVTLD 196
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + ++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E
Sbjct: 197 DALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A + PF + ++ SP Y + + + G ++ A M +G +++ M+NF+
Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKMVNFE 316
>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
Length = 317
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R F + FP+ALD++ +++AG + ++ ++ + P+ EF V+E + G S+
Sbjct: 136 RQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKSI 195
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + E+ +F T + VQ + GGNL E L +S I+R + + +V+ALS E
Sbjct: 196 DSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAE 255
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
K SA I+ +LPFC++ V + Y+ +LI DP G L+ A M G ++ +
Sbjct: 256 GKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQL 315
Query: 186 D 186
D
Sbjct: 316 D 316
>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 322
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + + P + P Y + + P V AF++ ++ M++M+N
Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 322
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G L +I +M P + FS+ + +Q + GGNL E + LS+ILR R + K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179
+S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + +
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVS-LFIGTIWI 314
Query: 180 RLMINFDV 187
R ++N +V
Sbjct: 315 RKIVNIEV 322
>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 322
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 98/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 AECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + + P ++ P Y + + P V AF++ ++ M++M+N
Sbjct: 261 AKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMKIMVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 322
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + + P + P Y + + P V AF++ ++ M++M+N
Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 310
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 95/185 (51%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L KR A F + L ++ +RAG + A+ +S P E RRVI
Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG L +++ M ++ + S I + ++GGNL++ L +R+R +K ++
Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ E K SA+I+ ++PF + ++ SP YMN + + P G ++GV+ M IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303
Query: 181 LMINF 185
+I+
Sbjct: 304 KIIDL 308
>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 325
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K + FP+ALD++ R+++AG SDAV ++ + P+ EF + +
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + +P F++ + VQ + GGNL+E + NLSR++R R + +V+ LS E
Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ LPF + ++Y +PGY+ L GH LL A M +G + + +I D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324
Query: 187 V 187
+
Sbjct: 325 M 325
>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 322
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R KF + P ALDII R ++AG P++ A + + S P+ EF + G
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318
Query: 184 NFDV 187
N +V
Sbjct: 319 NIEV 322
>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 322
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R KF + P ALDII R ++AG P++ A + + S P+ EF + G
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318
Query: 184 NFDV 187
N +V
Sbjct: 319 NIEV 322
>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 323
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 95/161 (59%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P+AL+++ R++R+G ++ + V+V + DP+ EF E Q+LG+ + +++ +
Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P + FF+T +++Q Q GG+L+E L + I+R+R + +VQAL+ E + S ++
Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+LP + ++Y+ +P YM +L + G ++ A ++G
Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311
>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 322
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 99/182 (54%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P + A+A++ + +DP+ +EF + + G +
Sbjct: 141 KKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ES+ M Q++ F S +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 TESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + + P ++ P Y + + V F+ I ++ M++M+N
Sbjct: 261 AKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
Length = 322
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R KF + P ALDII R ++AG P++ A + + S P+ EF + G
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318
Query: 184 NFDV 187
N +V
Sbjct: 319 NIEV 322
>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 316
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 97/180 (53%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L ++R A+F + L ++ +RAG V A+ + ++S+P +EF RV+
Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG L +S++ + M ++ ++ + I + ++GG+L+E + +R+R +K V+
Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS E K SA I+ +LP + L+ +P Y L P G M+LG+A M IG + +R
Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309
>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
Length = 292
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 8/175 (4%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIE---TQHLGLSLSE 67
FL FP A+D RS++AG+PV A+ I+G++ D EF RRV++ +GL E
Sbjct: 116 FLSRFPEAVDNFTRSIQAGIPVDRALK-ILGEAYD---DEFGRRVLKLCREMKVGLPFRE 171
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ + +V FF V+++ + G LS LA+LS +LR+R+ + K++AL+ E++
Sbjct: 172 ALGNFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESR 231
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
ASA ++ LP + L F +P + L+NDP G ++ G A A ML G ++++ M
Sbjct: 232 ASARVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRM 286
>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 326
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 105/182 (57%), Gaps = 1/182 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++RT F++ + + ++ S+RAG + + ++ ++ P+ EFRRV+ LG+
Sbjct: 146 RRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGIPT 205
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++S ++R +P +++ T I+VQ ++GGNL++ L + +R+R +K +++ L+ +
Sbjct: 206 QEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLTAQ 265
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
S +II +LP ++ L+ +PGY+ ++ P M +G + +G + MR ++N
Sbjct: 266 QSISGYIISALPVGLALLLMVINPGYVMGMMRWPWICMPIG-GVVLIFLGFIAMRKIVNI 324
Query: 186 DV 187
+V
Sbjct: 325 EV 326
>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 317
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 104/179 (58%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R KF + P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L +
Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+++S E +
Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A + PF + ++ +P Y + + + G +++ M IG +++ M+NF+
Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316
>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 401
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 99/182 (54%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L
Sbjct: 220 RQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVNIPL 279
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ +
Sbjct: 280 EDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 339
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S WI+GSLP + L+ +P Y+ L+ P G MLLG + G++V+R +I
Sbjct: 340 GRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRALIRV 399
Query: 186 DV 187
D+
Sbjct: 400 DI 401
>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 322
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 105/188 (55%), Gaps = 12/188 (6%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P++++++VRS+R G P+ A+ ++ +S DP+ +EF + + G +
Sbjct: 141 KKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAAYGREV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------VM 179
A+ S + + P + P Y + +++ H L + A F ++G+M VM
Sbjct: 261 AQWSGKFLSAFPLGALLFILVKDPNYYDGVMD----HELF-IPACF-VVGVMLTMNLFVM 314
Query: 180 RLMINFDV 187
R++ N V
Sbjct: 315 RMLTNIKV 322
>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 322
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G +
Sbjct: 141 KKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECSYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P P Y + +++ P + + I VMR + +
Sbjct: 261 AQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMRKLTDI 320
Query: 186 DV 187
V
Sbjct: 321 QV 322
>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 322
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 2/188 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + +
Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + E++ M + +Q++ F + + +Q Q GGNL+E LA L++++R R + +V
Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255
Query: 121 ALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
A++ EAK S + P FC+ + P Y + +++ P + + ++VM
Sbjct: 256 AITAEAKWSGKFLSGFPVFCL-VFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVM 314
Query: 180 RLMINFDV 187
R++ N V
Sbjct: 315 RILTNIKV 322
>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 322
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + G +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +S+Q Q GGNL++ LA L++++R R + +V A++ E
Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---GHMLLGVAAAFML-IGIMVMRL 181
AK S + P + P Y + ++++P +G FML + ++VMR+
Sbjct: 261 AKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVG----FMLTLNLIVMRI 316
Query: 182 MINFDV 187
+ N V
Sbjct: 317 LTNIKV 322
>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 322
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 98/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A + P+A++++VRS+R G P + AVA++ + DP+ SE + + G +
Sbjct: 141 KKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 GEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + P ++ P Y + + V A F++ + VMR+++N
Sbjct: 261 AKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMRMLVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 320
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 101/182 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR A+F +AL I+ S+RAG A+ ++ + P+ EF R + +LG +
Sbjct: 139 QKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMNLGTAT 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ + + +++ T + +Q Q+GGNLS+ L +S +R+R +K +++ L+ +
Sbjct: 199 EEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQ 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S I+G+LP + ++ +PGY+ +L +D G +L+ LIG+ +++ +++
Sbjct: 259 GRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIKKIVDI 318
Query: 186 DV 187
V
Sbjct: 319 KV 320
>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 321
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 99/171 (57%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P AL++I R ++AG PV A+A++ + DP+ SEF + + G L +++ +
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ +++ F T +S+Q+ GGNL E L L+ +R+R ++ KV+A++ E + SA+I+
Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
++P + + PG+ + + +P+ LLG + ++++G ++M M NF
Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNF 319
>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
sediminis HAW-EB3]
Length = 325
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR FP+ALD++ R+++AG SDA+ + + P+ EF+ + + +
Sbjct: 145 KRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANINYTKDVK 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + +P F++ + VQ + GGNL+E + +LSR++R+R + +V+ LS E
Sbjct: 205 RALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ LPF + ++Y +P Y+ L G LL A M IG + +I D
Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWISKIIRID 324
Query: 187 V 187
+
Sbjct: 325 M 325
>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 322
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 101/182 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ SEF + + G +
Sbjct: 141 KKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENAYGRDM 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ + + LQ++ F + +++Q Q GGNL+E LA L+ ++R R + +V+A++ E
Sbjct: 201 GEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + + P + P Y + +++ P A F+ + ++VMR +++
Sbjct: 261 AQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMRKLVDI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 96/180 (53%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R AK + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + E
Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ M + +Q++ F S +++Q Q GGNL+E LA L+ ++R R + KV+A++ EAK
Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
S + + P + P Y + +++ P + + ++VMR++ + V
Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322
>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 322
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R KF + P ALDII R ++AG P++ + + S P+ EF + G
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLNYGYD 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318
Query: 184 NFDV 187
N +V
Sbjct: 319 NIEV 322
>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
Length = 322
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 100/182 (54%), Gaps = 2/182 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G +
Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECAYGRDIG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S + P FC++ ++ P Y + +++ P + + VMR++ N
Sbjct: 262 QWSGKFLSGFPLFCLAGILV-KDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMRMLTNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 309
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 100/175 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R +F P LD++ +RAG ++ Q P+ ++V+ LGL L
Sbjct: 128 QRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISLGLDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ ++R V + ++ T I +Q ++GGNL++ L N++R++RDR+++ A+++AL+ +
Sbjct: 188 EDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKALTSQ 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+ I+ LP ++ ++ SPGY++ L + +G ++LG A F IGI+V++
Sbjct: 248 GRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQ 302
>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
Length = 325
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 8/185 (4%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR----RVIETQHLG 62
KR FP+ LD+I R+++AG +DA+ + + P+ EF+ + T+ +
Sbjct: 145 KRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L+L I R+ P F++ + VQ + GGNL+E + NL+R++R R + +V+ L
Sbjct: 205 LALLGFIQRV----PSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTL 260
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E + SAWI+ LPF + ++Y +P Y+ L G LL M+IG + +
Sbjct: 261 SAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWISRI 320
Query: 183 INFDV 187
I DV
Sbjct: 321 IKIDV 325
>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 325
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 98/172 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL
Sbjct: 144 RRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVSL 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E
Sbjct: 204 HDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAE 263
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+ SAWI+G LPF + ++ + +++VL DP G ++G M G++
Sbjct: 264 GRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLL 315
>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 321
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 98/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P + A+ ++ + DP+ +EF + + G +
Sbjct: 140 KKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRDI 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 200 GEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P + P Y + +++ P + + + ++VMR ++N
Sbjct: 260 AQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVNI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
Length = 322
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 97/181 (53%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P + A++++ + +DP+ +EF + + G +
Sbjct: 142 KRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRDIG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ EA
Sbjct: 202 EALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
K S + P + P Y + + P + F++ + VMR ++N
Sbjct: 262 KWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVNIK 321
Query: 187 V 187
V
Sbjct: 322 V 322
>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 325
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + +
Sbjct: 145 KRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANINYSKDTK 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E
Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324
Query: 187 V 187
+
Sbjct: 325 M 325
>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 325
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + +
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANINYSKDTK 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E
Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324
Query: 187 V 187
+
Sbjct: 325 M 325
>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 320
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 101/181 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R F + + II S++AG A+AV+ ++SDP EF+++++ LG+S
Sbjct: 139 KDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMSLGISE 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ ++ + +++ VI +Q +GGNLSE L N+S +R+R+ +K++++ L+ +
Sbjct: 199 EDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELKTLTAQ 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S I+ +P + +Y + Y+ +L G +++ A +G++++R +IN
Sbjct: 259 GRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIRKIINI 318
Query: 186 D 186
D
Sbjct: 319 D 319
>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 301
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 99/171 (57%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P AL++I R ++AG PV A+A++ + DP+ +EF + + G L +++ +
Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNSLFD 188
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E + SA+I+
Sbjct: 189 RVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAYILT 248
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
++P + + PG+ + ++P+ L+G + ++++G ++M M NF
Sbjct: 249 AIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 299
>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 320
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 86/148 (58%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P ++A+A++ + DP+ SEF + + G +
Sbjct: 139 KKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRDI 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V A++ E
Sbjct: 199 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153
AK S + + P ++ P Y +
Sbjct: 259 AKWSGKFLSAFPIVALIVIKLGDPHYYD 286
>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 320
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 102/184 (55%), Gaps = 4/184 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + P+A++++VRS+R G P + A++++ + DP+ SEF + + G +
Sbjct: 139 KKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRDI 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E
Sbjct: 199 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITAE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183
AK S + + P ++ P Y + ++ P + G A F+ + ++VMR +
Sbjct: 259 AKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHP--LFIPGCIAVVLFLSLNLIVMRKLT 316
Query: 184 NFDV 187
+ V
Sbjct: 317 DIKV 320
>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 322
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 96/182 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ +E + + G +
Sbjct: 141 KKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAAYGRDM 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ES+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 GESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S + P + P Y + ++ V AF+++ + VMR + N
Sbjct: 261 AKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMRHLTNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
Length = 322
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 85/153 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G +
Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
K S + + P + P Y + + P
Sbjct: 262 KWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHP 294
>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 319
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R D P D++ R++ +G +S A ++ Q P+ EF+ + Q+LGL
Sbjct: 142 QRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLGLPYE 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + R + E+ F+ + VQ Q GG+ S+ L NL+ +R+R + KV+A++ E
Sbjct: 202 ITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAITSEG 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A AW++ +LPF +Y Y +VL+ P ++ V+ A +GI +R ++ +
Sbjct: 262 RAQAWVLSALPFVSFGGIYLLDRDYASVLLERPNVMAIMAVSIA---LGIAWIRQIVCIE 318
>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 279
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 104/185 (56%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L ++R AK ++ P+AL+++ S+R+G ++ A+ ++ ++ P E V+ Q LG
Sbjct: 95 YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+SL ++ + + L++V+ + I++ +GGNLSE L L+ LR + M+ K++AL
Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + K ++G LP + +++ P M L + G ++ V A +++G + ++ +
Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274
Query: 183 INFDV 187
+ DV
Sbjct: 275 VTIDV 279
>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 283
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 97/186 (52%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K L K+R KF+ P+AL++I S+++G VS A+ + + P++ EF+ Q L
Sbjct: 98 KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ + ++ M + +P E + + + ++GGNL+E L LS LR + M+ K+ A
Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R
Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277
Query: 182 MINFDV 187
++ DV
Sbjct: 278 IVAIDV 283
>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 326
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 100/181 (55%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R F P L ++ S+ AGL ++ + + + +DPV +EFRR + LG+ L
Sbjct: 146 RRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETRLGVPLE 205
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + ++++ I +Q Q+GGNL+E L ++ +R+R+ ++ +V ALS E
Sbjct: 206 DALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEG 265
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ SAW++GSLP T + + Y+ L DPRG +LL AA ++ +G M ++ +
Sbjct: 266 RLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMSRLVRVE 325
Query: 187 V 187
V
Sbjct: 326 V 326
>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 323
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 102/182 (56%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + LG
Sbjct: 142 QKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMSLGTPT 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + + ++ T + +Q Q+GGNL+E L N++ +R+R +K ++++++ +
Sbjct: 202 EEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIRSITAQ 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S +IG LPF ++ L+ SP Y+ L N G +++ A +IG++ ++ +++
Sbjct: 262 GRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIKKIVDI 321
Query: 186 DV 187
+V
Sbjct: 322 EV 323
>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
Length = 314
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
D ++L ++ S+RAG + A+A + ++ P EF R+I +G L+ ++
Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
M Q+ + + I++ ++GGNL+E L + +R+R ++ +VQAL+ E K SA+++
Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+LPF + ++ ++P Y+ VL P G ++ + IG
Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIG 302
>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 322
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 95/181 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P + V ++ + DP+ +EF + + G +
Sbjct: 142 KRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECAYGRDIG 201
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 202 EALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ S + + P P Y + +++ P + + + VMR++ N
Sbjct: 262 QWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMRVLTNIK 321
Query: 187 V 187
V
Sbjct: 322 V 322
>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 322
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 8/186 (4%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A F + P+A++++VRS+R G P S A+ ++ + DP+ SE + + G +
Sbjct: 141 KKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRDI 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+S+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E
Sbjct: 201 GDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVMRL 181
AK S + P ++ P Y + + P + LG F++ VM+
Sbjct: 261 AKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLG----FLIANYFVMKA 316
Query: 182 MINFDV 187
+ N V
Sbjct: 317 LTNIKV 322
>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 310
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L KR A F + L ++ +RAG + A+ +S P E RRVI LG
Sbjct: 127 LAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLGR 186
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L +++ M ++ + S I + ++GGNL++ L ++ +R+R +K ++AL+
Sbjct: 187 DLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKALA 246
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E K SA+I+ ++PF + ++ SP YMN + P G ++ + M +G + MR +I
Sbjct: 247 AEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKII 306
Query: 184 NF 185
+
Sbjct: 307 DL 308
>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 332
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 5 IKKRTAKFLDDFPNAL-DIIV---RSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K R A+ + F N L D+I ++R G + ++ ++ DP +EFRRV++
Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S E++ ++R +P ++ T +S+Q ++GGNL++ L + +R+R +K ++
Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176
L+ + + S+WII LP ++ + +P YM L P+ + V + FM+ +G
Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321
Query: 177 MVMRLMINFDV 187
++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332
>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
DSM 5159]
gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
[Thermomicrobium roseum DSM 5159]
Length = 323
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+ R +F++ + + ++ S+RAG + + ++ +S+ P+ EFRRV+ LG+ L
Sbjct: 143 RHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLGVPL 202
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ ++ +P +++ T I++ ++GGNL++ L + +R+R +K +++ L+ +
Sbjct: 203 QDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQ 262
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
S +II LP ++ L++ +P Y+ L+ P M +G A M++G +VMR ++
Sbjct: 263 QSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPWICMPIG-AVICMVLGFVVMRRIVAI 321
Query: 186 DV 187
+V
Sbjct: 322 EV 323
>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 294
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 96/178 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + ++ P LD VRS+++G ++DAV V +P+R RV +G+SL
Sbjct: 114 QQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMGVSL 173
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+S+S + E F+ + V + GGN SE L NL +++R+R+ +++A++ E
Sbjct: 174 PDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGE 233
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +A+++G LP + +PGY+ + +D G ++L A A L G +M M+
Sbjct: 234 TRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRML 291
>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 329
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++H +R F +AL I+ ++RAG A+ + + P+ +EF +
Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + ES+ + + ++ T + +Q Q+GGNL++ L N+SR +RDR +K +++
Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ + + S IIG LP + ++ +PGYM + +P G LL AA L G+ V++
Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322
Query: 181 LMINFDV 187
+++ DV
Sbjct: 323 KIVDIDV 329
>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
Length = 320
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
+ P+A+D++VRS+R G P S A+ + + DP+ +E + + G + E++ M
Sbjct: 147 EQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETAYGRDMGETLKAMA 206
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
+ Q++ F + +++Q GGNL+E L LS+++R R + +V+A++ EAK S ++
Sbjct: 207 ERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAKWSGNLL 266
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+ P + P Y + ++ P V AAF+++ ++VMR + N V
Sbjct: 267 SAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMRALTNIKV 320
>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 324
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 98/170 (57%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR +F P ALD++ R+++AG + ++ + P+ EF + ++ + G+ +
Sbjct: 143 RKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEINYGMDV 202
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S + + ++ FF +++Q + GGNL+E +A ++ ++R+R + K++ LS E
Sbjct: 203 DRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAE 262
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ SA+I+ +LPF ++ ++Y + Y+++L G ++ AA M+IG
Sbjct: 263 GRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312
>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
crunogena XCL-2]
Length = 315
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 94/178 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R + FP LD IVR++++G + A+++I + P+ E + V LG+S+
Sbjct: 134 KQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLGISM 193
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ + + + E FF + +Q + GG L+ L LSR++R R+ +AK++ L+ E
Sbjct: 194 RDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAE 253
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
++ +A +G P YF P M +NDP G +L ++ M+ G ++++ M+
Sbjct: 254 SRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSML 311
>gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
Length = 67
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++ +M IGI VMR
Sbjct: 1 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60
Query: 181 LMINFDV 187
M+NFD+
Sbjct: 61 NMVNFDI 67
>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 309
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 99/185 (53%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L KR KF D ++L ++ +RAG + AV + Q+ P EF R++
Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G L++++ + M ++ S+ S I + ++GG+L++ L + R +R+R ++ +V+
Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS E K SA+++ +LP + ++ SP Y+ + P G ++ M +G + ++
Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302
Query: 181 LMINF 185
+++F
Sbjct: 303 KIVSF 307
>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
Length = 321
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 98/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + P A++++VRS+R G P S A+A++ + DP+ +E + + G +
Sbjct: 140 KKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRDM 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ M + Q++ F + +++Q GGNL+E L L++++R R + +V A++ E
Sbjct: 200 GETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAE 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AK S ++ + P + P Y + ++ P + + AF+++ ++VMR +++
Sbjct: 260 AKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVDI 319
Query: 186 DV 187
V
Sbjct: 320 KV 321
>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 301
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 2/184 (1%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
+ L +R +F FP+AL++++ +V AG + AV+ VGQ+ D V EF+ + +
Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVS-FVGQNLDNEVGREFKNMGDRLK 173
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S + + R + P E FF+ I GG L LA L R+L D + M+ K
Sbjct: 174 LGESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKM 233
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA ++ ++P + ++Y +P +N +++DP+G +L L+G+ ++
Sbjct: 234 AMTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVW 293
Query: 181 LMIN 184
L++
Sbjct: 294 LLVK 297
>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 323
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR KF + P+ L+++V +RAG A+ + + P+ EFRRV++ LG+ +
Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ ++R +P ++ T I+VQ ++GGNL+E L +S +R+R +K +++ L+ +
Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180
S + +P V ++Y + YM N P G++ L AA ++ G +VM
Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316
Query: 181 LMINFDV 187
+ + +V
Sbjct: 317 KIGDIEV 323
>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 317
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 1/182 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K + P+A+D IVRS++ G V A + P+ ++FR + E +GL
Sbjct: 136 RREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGLPFE 195
Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
I R P L +V +Q + GG L++ LA L+ +R R + + +V+A + E
Sbjct: 196 TVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAE 255
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ +A+I+G LP + + + P YM V + P G LL V G +VMR M+
Sbjct: 256 GRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAMLRV 315
Query: 186 DV 187
V
Sbjct: 316 KV 317
>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 300
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 99/182 (54%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+ +R F + FP+AL+I++ +V AG + A++ + ++P+ EF+ + + L
Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S + R + P E FF+ I GG L LA L R+L D + ++ K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ ++P + ++ + +P ++ ++NDP+G +L LIG+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293
Query: 182 MI 183
++
Sbjct: 294 LV 295
>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 300
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 99/182 (54%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
++L+KKR F + FP+AL+I++ ++ AG + A++ + +DP+ EF+ + + L
Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + R + P E FF+ + GG L LA L R+L D + + K A
Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ ++P ++ + +P +N +++DP G ++L +G++++ L
Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293
Query: 182 MI 183
++
Sbjct: 294 LV 295
>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 325
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 81/147 (55%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR F D + + ++ ++R G + ++ + P+ EFRRV++ LG +
Sbjct: 140 KKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVGLGRTT 199
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ ++R MP +++ T +++Q ++GGNL++ L + +R+R +K ++Q L+ +
Sbjct: 200 EEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQTLTAQ 259
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ S W+I LP ++ + +P YM
Sbjct: 260 GRISGWVITGLPIGLAIFITMINPEYM 286
>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 660
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 99/187 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ ++R F D P+AL ++ S+R+G V+ +V + G P+ E R +
Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+S +++ + M +++ + I +Q ++GGNLSE + + +R+R ++ +++
Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
ALS E + SA+++ +LP L+ + P YM L P G ++ +A + +G + +
Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653
Query: 181 LMINFDV 187
++ +V
Sbjct: 654 KVVKVEV 660
>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 283
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 99/186 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
++L ++R +F+ P+AL++I S++AG V++A+ + + P++ EF+ + Q L
Sbjct: 98 RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ + ++ + + +P E + + +GGNL+E L LS LR + M+ K+ +
Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K ++ LP + +Y P M ++ +P G ++ V++ + G M ++
Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277
Query: 182 MINFDV 187
+I DV
Sbjct: 278 IITIDV 283
>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
Length = 325
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
K P A D++ R++RAG A+ + + P+ SEF V + G+ + E+++
Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
R +P++++ F + +Q + GGNL+E L N+ ++R R + K++ LS E +
Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
WI+ +P + L+YF +P ++ L P G LL A +G++ +R ++ V
Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325
>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 329
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R F + + + ++ S+R+G + ++ ++ ++ P+ EFRRV++ LGLSL +
Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ ++R +P ++ + I++Q+++GGNL+E L ++ +R+R +K +++ L+ +A+
Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183
S +++ LP ++ ++ +P YM L+ P + V +A M+I G ++ ++
Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325
Query: 184 NFDV 187
N ++
Sbjct: 326 NIEI 329
>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 282
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 100/187 (53%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++
Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ + + ++ LP + ++ F P M L N+P G L V +G + +
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275
Query: 181 LMINFDV 187
+ N DV
Sbjct: 276 KITNIDV 282
>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
Length = 326
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
T + P A+D I R RAG+P A + + E R + LG+ L +
Sbjct: 148 TEELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQV 207
Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
+ +PL E FF+ ++ + + GG L++ L L+ LR+R + KVQA + EA+A
Sbjct: 208 LQESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARA 267
Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
S I+ L V Y +P L+ DP G +LG AAA + G+ V LM+
Sbjct: 268 SIKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323
>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
Length = 320
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G +
Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179
K S + + P ++ P Y + + R H L+GV F+ + + VM
Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGV---FLALNLFVM 312
Query: 180 RLMINFDV 187
R++ + V
Sbjct: 313 RILTDIKV 320
>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 293
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 97/178 (54%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ ++ P LD VRS++AG ++DAV + S +P+R+ RV LG+ L
Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++A++ E
Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +A I+G+LP + +P Y+ + D G ++L +A A ++G +V+ M+
Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMM 290
>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 281
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 99/186 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
KH K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L
Sbjct: 96 KHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVKL 155
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L E++ M R + ++ ++ QLGGN++E +S ++R+R ++ K+ A
Sbjct: 156 GVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKIDA 215
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K WI+ ++P + ++ + P M +++ G +L+ + A ++GI+++R
Sbjct: 216 LTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIRR 275
Query: 182 MINFDV 187
++N D+
Sbjct: 276 IVNIDI 281
>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 302
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61
+L++KR F + FP+AL+I++ +V +G + A+A VGQS D + EFR + E L
Sbjct: 118 YLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAY-VGQSLDNQIGLEFRDMGERLKL 176
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + R + P FF I GG L +A L R+L D + + K A
Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ SLPF L+ + SP ++ ++ DP G +L +G+ ++ L
Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296
Query: 182 MI 183
+I
Sbjct: 297 LI 298
>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CMR15]
Length = 325
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 95/181 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ +
Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMG 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E
Sbjct: 205 DALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++
Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324
Query: 187 V 187
+
Sbjct: 325 I 325
>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 325
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 96/181 (53%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ ++
Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMN 204
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E
Sbjct: 205 DALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++
Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324
Query: 187 V 187
+
Sbjct: 325 I 325
>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 320
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G +
Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA
Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179
K S + + P ++ P Y + + R H L+G+ F+ + + VM
Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGI---FLALNLFVM 312
Query: 180 RLMINFDV 187
R++ + V
Sbjct: 313 RVLTDIKV 320
>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
Length = 308
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
++ +F FP ++ I R+V AG+ V A+A + + EF + + +G+SL
Sbjct: 127 QQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIGISLK 186
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P FFS + + + GG L E L +LSR L + +K K+++L+ E
Sbjct: 187 QALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSLTAEP 246
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ +A ++ LP C+ +++YF SP VL + P G+ +L M +G+ ++ ++
Sbjct: 247 RMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302
>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 622
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 104/184 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++
Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+
Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M
Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615
Query: 181 LMIN 184
+++
Sbjct: 616 KVVS 619
>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 623
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 104/184 (56%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++
Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+
Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M
Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616
Query: 181 LMIN 184
+++
Sbjct: 617 KVVS 620
>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
Length = 325
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 94/172 (54%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P A D+I R++RAG + A+ + + PV E V + G+S++++++ ++
Sbjct: 154 LPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGLIDR 213
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
+P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ +
Sbjct: 214 VPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILTA 273
Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ +
Sbjct: 274 LPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325
>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 294
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 93/179 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR A F P AL II +R+G A+A + +P+ E +RVI + G L
Sbjct: 113 KKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRKL 172
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
ES+ + E+ ++ +++Q + GGNL+E + ++ + DR N++ +++ L+ +
Sbjct: 173 EESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTTQ 232
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ S +IG LP + ++ + SP YMN G ++L V+ G ++++ ++N
Sbjct: 233 GRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291
>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 652
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 96/172 (55%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P +L ++ S+R+G + A+ I + DP+ EF R + +G +++++ RM
Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
M + + I +Q ++GGNL+E L +R LR+R+++ +V+ALS E + SA+I+ +
Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600
Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
LP + + + + GY+++L P G M+L ++ GI MR ++ +V
Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652
>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 332
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 99/185 (53%), Gaps = 4/185 (2%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R F + + + ++ ++R G + ++ ++ P +EFRRV++ LG S
Sbjct: 148 QRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVGLGRSTE 207
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ ++R MP ++ T +++Q ++GGNL++ L + +R+R +K ++ L+ +
Sbjct: 208 EALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEISTLTAQG 267
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRLM 182
+ S+WII LP ++ + +P YM L P+ + VA+ FM+ +G ++ +
Sbjct: 268 RISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGYFAIQKI 327
Query: 183 INFDV 187
I+ +V
Sbjct: 328 IDIEV 332
>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 325
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 94/173 (54%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++
Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+
Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ +
Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325
>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
Length = 310
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+R F D FP+AL++I R+VRAG A+ ++ S DP+ EFRR + +GLS
Sbjct: 129 NRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVGLSA 188
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ M + L +V F+T ISV + GG L E L L+ ++RDR ++++++
Sbjct: 189 PKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSITSS 248
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
+ SA II L + P Y + P G LL
Sbjct: 249 GRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLL 288
>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
Length = 325
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 94/173 (54%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++
Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+
Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
+LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ +
Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325
>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 314
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 4/190 (2%)
Query: 2 KHLIKKRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
K +K RTAK +F LD ++ S+RAG A+ + P++ E R++
Sbjct: 125 KMWVKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILN 184
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
LG + S++ M ++ + + + + + GGNL+E + +++++RDR ++
Sbjct: 185 ENRLGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIRE 244
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
KV A + E + S++I+ SLP ++ F +PGY++ L + G L+G + I +
Sbjct: 245 KVHAYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFL 304
Query: 178 VMRLMINFDV 187
MR++++ V
Sbjct: 305 WMRIIVDIKV 314
>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
Length = 161
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 89/161 (55%)
Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
+RAG+ ++ A +V +S P+ EF ++ Q LG++L +S++ + R +P + +
Sbjct: 1 MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60
Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
+ + ++ GG L+EAL S +R R M+ K+ AL+ + K AW++G LP + ++
Sbjct: 61 AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120
Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
P M+ L + G L V A ++G++++R ++ DV
Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161
>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 302
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
LIKKR +F FP+AL+I++ +V AG V +++ + + V F+ + E LG
Sbjct: 119 LIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLGE 178
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ R ++ P FF I GG L +A L R+L D + + K A++
Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAMT 238
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA I+ SLPF ++ F SP +N ++ DP G +L +G+ ++ L+I
Sbjct: 239 SEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLLI 298
>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 272
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 101/185 (54%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L ++R +F P AL ++ ++RAG+ ++ + +V QS P+ EF ++ Q LG
Sbjct: 88 QLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQRLG 147
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ ++ + MP S + + SQ GGNL+EAL ++++ LR R ++AK+QAL
Sbjct: 148 VPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQAL 207
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + + AWI+G+LP + ++ P M +L + P G +L + G++++R +
Sbjct: 208 TSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIRRI 267
Query: 183 INFDV 187
+ ++
Sbjct: 268 VRIEL 272
>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 316
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 95/181 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR P+ALD++ R + G P++ + + DP+ +EFR + + G SL+
Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + R + +++ + S + +Q GGNL L L+R++R R M+ +V A+S E
Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +A I+ ++P + T+P Y + +DP + G A +L +++R +++F
Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315
Query: 187 V 187
V
Sbjct: 316 V 316
>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 311
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L++ R + D F L + R+V AG+ V A+A I + EF + + +G
Sbjct: 127 LMRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIG 186
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ L +++++ +P FFS + + + GG L E L +LSR + D +K K+++L
Sbjct: 187 IGLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSL 246
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ E + +A I+ SLP + ++YF +P L PRGH++LG M +G+ ++ L+
Sbjct: 247 TAEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLL 306
>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 327
Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 101/183 (55%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKR D +A+ +I S++AG AV ++ + + P+ EF ++ + + G +
Sbjct: 145 IKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVNFGTT 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+++ +V + ++ T + +Q Q+GGNLSE L N+S +R+R +K +V+ ++
Sbjct: 205 TEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVKTVTA 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ + S II +LP + +++ + ++ VL DP G ++LG + +IGI + +++
Sbjct: 265 QGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFISRIVS 324
Query: 185 FDV 187
+V
Sbjct: 325 IEV 327
>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 314
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313
>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
Length = 654
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 101/187 (54%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ L +R KF P+ L ++ ++ +G ++ A+ + S+ P EF R +
Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G +S+++ M M + + + + I +Q +GGNL++ L + LR+R+++K +V
Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+LS E + SA+I+ LP + + +++P Y ++L G ++L + M+IG + MR
Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647
Query: 181 LMINFDV 187
+I +V
Sbjct: 648 KVIQIEV 654
>gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116]
Length = 301
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L KR F FP+AL+I++ +V AG + A + + V EF+ + + LG
Sbjct: 117 LQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLGE 176
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + + R + P E FF+ I GG L LA L RIL D + +++K A++
Sbjct: 177 NAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAMT 236
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA ++ ++P + +V P +++ ++NDP+G M+L ++G+ V+ L++
Sbjct: 237 SEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLLV 296
>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
BTAi1]
gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
sp. BTAi1]
Length = 329
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+K+T + F+D FP+A+D + R +RAGLP++ A+ + S PV F + + +G+
Sbjct: 145 QKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELRIGVP 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L E++ R + L + FF+ +++Q GGNL+ L +LS I+R R+ + K +A +
Sbjct: 205 LEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAKAATG 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
E + +A+ +G++P + + P Y+ L DPRGH+
Sbjct: 265 EIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHL 303
>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 314
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313
>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
Length = 323
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 97/181 (53%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R KF P+++D++ R++RAG V+ A+ V+ Q +PV SEF V Q+ GL
Sbjct: 143 QRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQNFGLPFR 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ ++ +P ++ F T + VQ + GGNL+E L + ++R+R ++ +V+ + +
Sbjct: 203 DAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVKTKTAQG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ + I+ LP + L+ +P Y L DP G +L A + +G + ++ +
Sbjct: 263 RLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFINKIVKIE 322
Query: 187 V 187
V
Sbjct: 323 V 323
>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 302
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L+KKR +F FP+AL+I++ +V AG + +++ + + V + F+ + E LG
Sbjct: 119 LLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLGE 178
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ R ++ P FF I GG L +A L R+L D + + K A++
Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMT 238
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA I+ SLPF + F SP +N ++ DP G +L +G+ ++ L+I
Sbjct: 239 SEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLLI 298
>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
C54]
Length = 281
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 92/176 (52%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
F P AL ++ ++RAG+ + A+ +V Q P+ EF ++ Q LG+ E+++R
Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
+ M + + + Q GGNL+EAL ++++ L R ++A+++ L+ + + AW
Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
I+G+LP + + P M L + P G +L V G++++R ++ D+
Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281
>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 282
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 97/186 (52%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K + +KR D P+AL ++ ++RAG A+ +V +S P+ EF ++ L
Sbjct: 97 KKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVRL 156
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L +++ M + +P+ + + I++ ++GGNL+E L +++R LR++ M+ K++A
Sbjct: 157 GVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRA 216
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K ++ LP + ++ P M L + P G L V A L+G +
Sbjct: 217 LTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAISK 276
Query: 182 MINFDV 187
+ + DV
Sbjct: 277 ITHIDV 282
>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 294
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 92/171 (53%)
Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
++ P LD VRS+++G ++DAV + ++ P++ R+ LG+SL ++
Sbjct: 121 IEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARDF 180
Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
E F+ + V + GGN SE + NL R++RDR+ +++A++ E + +A +
Sbjct: 181 AELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTALV 240
Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+G LP ++ +P Y+ + ND G +LL +A A L+G +++ M+
Sbjct: 241 LGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRML 291
>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 282
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 94/182 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P+AL ++ S+RAG+ S A+ V+V P+ E V+ QH+G+
Sbjct: 101 RRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMGVRA 160
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ + +P+ + F + +++ ++GGNL+E LA L+ LR R M+ KV+AL+ +
Sbjct: 161 DEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQ 220
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
K ++ LP + + M + + G +++GV +G + + ++
Sbjct: 221 GKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKIMTI 280
Query: 186 DV 187
DV
Sbjct: 281 DV 282
>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
Length = 299
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 95/181 (52%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L +KR +F D+ P+ +D ++R++R G P+ I Q F ++++ +
Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G ++++ + + MP+ E F + V+S+Q + GG L+ L L LR R + A +Q
Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ E++ SA ++ +LP V +++ T + N L+ G +++ +L G+ ++R
Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293
Query: 182 M 182
M
Sbjct: 294 M 294
>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 310
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 88/169 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R A F D ++L ++ S+RAG + AV + +++ P EF R++ +G L
Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + M + + + I + ++GGNL+E L + +R+R ++ +V+ALS E
Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
K SA ++ +LPF + + T+P Y+ G++++ + +G
Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVG 298
>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 93/179 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+ R + ++ P LD VRS+++G +SDAV + + P++ R+ LG+SL
Sbjct: 114 RVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQLGVSL 173
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ E F+ + V + GGN SE + NL R++R+R+ +++A++ E
Sbjct: 174 PDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGE 233
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ +A ++G LP ++ +P Y+ + ND G ++L +A L+G +++ M+
Sbjct: 234 TRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLWRMLR 292
>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 282
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 95/182 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ LG+ +
Sbjct: 101 KKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIRLGIDM 160
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ +
Sbjct: 161 DIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIKALTSQ 220
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ LP + ++ F P M L +P G L V +G + + + N
Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSISKITNI 280
Query: 186 DV 187
DV
Sbjct: 281 DV 282
>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 327
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 102/186 (54%), Gaps = 4/186 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL
Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ +
Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181
+ SA++I LP ++ + +P YM+ + + P L VA M+ IG +
Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321
Query: 182 MINFDV 187
+++ +V
Sbjct: 322 IVDIEV 327
>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
Length = 291
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 98/187 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++HL +R F P+A+ +I +VRAG ++ A+ + + P EF ++
Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG++L +++ + R M ++ F + + ++ GGNL+E L L+ +R + ++ K+
Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ + + W++ LP V ++ P M L++ +G ++ V A ++G++ +R
Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284
Query: 181 LMINFDV 187
++ D+
Sbjct: 285 RIMAIDI 291
>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 367
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 97/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L
Sbjct: 186 QQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETRVNIPL 245
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ +
Sbjct: 246 EDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 305
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ S WI+G+LP + L+ +P Y+ L+ P G LLG G++V+R +I
Sbjct: 306 GRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIRALIRV 365
Query: 186 DV 187
DV
Sbjct: 366 DV 367
>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 284
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 98/184 (53%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R K P+ L ++ S+RAGL + A+ + + P+ EF V+ Q +G+
Sbjct: 101 LKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMGV 160
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L +++ +P+Q+V+ F + +++ ++GGNL+E+L +L+ LR R M+ KV++L+
Sbjct: 161 KLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSLT 220
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ + ++ +P + T + P M+ L + P G ++ VA +G + ++
Sbjct: 221 AQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKIV 280
Query: 184 NFDV 187
D+
Sbjct: 281 TIDI 284
>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 327
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 101/186 (54%), Gaps = 4/186 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL
Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ +
Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181
+ SA++I LP ++ + +P YM + + P L VA M+ IG +
Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321
Query: 182 MINFDV 187
+++ +V
Sbjct: 322 IVDIEV 327
>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
Length = 325
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 93/185 (50%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H +R K P A D+I R++RAG + A+ + + P+ +E V + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E + WI+ LP + +Y +P M+ L G LL A +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320
Query: 183 INFDV 187
+ +
Sbjct: 321 VRIHI 325
>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 325
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 93/185 (50%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H +R K P A D+I R++RAG + A+ + + P+ +E V + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
S E + WI+ LP + +Y +P M+ L G LL A +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320
Query: 183 INFDV 187
+ +
Sbjct: 321 VRIHI 325
>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+AL I ++RAG +S AV V+V P+ EF V++ Q LG+S
Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVSF 164
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++I +M + + + + + V ++GGNLSE L L+ LR + ++ ++QAL+ +
Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQ 224
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ P + ++Y P M +L + G +L V + +G ++R ++
Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVAI 283
Query: 186 DV 187
D+
Sbjct: 284 DI 285
>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 282
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 95/186 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ L
Sbjct: 97 KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++A
Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + + ++ LP + ++ F P M L P G L V L+G +
Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276
Query: 182 MINFDV 187
+ + DV
Sbjct: 277 ITHIDV 282
>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+AL I ++RAG +S A+ V+V P+ EF V++ Q LG+S
Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVSF 164
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++I +M + + + + + V ++GGNLSE L L+ LR + ++ +++AL+ +
Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQ 224
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ P + ++Y P M++L G ++L V A +++G ++R ++
Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVAI 283
Query: 186 DV 187
D+
Sbjct: 284 DI 285
>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 295
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 94/178 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292
>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 295
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 94/178 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292
>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 323
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 94/181 (51%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR KF +AL I+ S+R+G A+ ++ + P+ EF ++ + G
Sbjct: 143 KRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMNWGTPTE 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ MV + +++ T + +Q Q+GGNL+E L ++ +R+R +K +++ L+ +
Sbjct: 203 EALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQG 262
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ S IIG LP +S ++ + YM VL G ++ A F ++G+ +++ +I
Sbjct: 263 RISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIKKIIKIP 322
Query: 187 V 187
V
Sbjct: 323 V 323
>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 294
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 99/187 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ L +R KF +AL +I S++AG ++ A+ + Q+ P+ EFR +I+
Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ + +++ M R + ++ +T I Q GG L+ L ++ ++R+R + KV+
Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ + A +I P + +++ +P + + +P G LL VA F +IG +++R
Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287
Query: 181 LMINFDV 187
++ +V
Sbjct: 288 RIVTIEV 294
>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 294
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H
Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164
Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284
Query: 178 VMRLMINFD 186
++R + F
Sbjct: 285 LIRQLTKFK 293
>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 322
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 94/182 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + + P+A++++VRS+R G P ++ + + SDP+ SE + + G +
Sbjct: 141 KKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDV 200
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ESI M + +Q++ F + + +Q GGNL+E LA L+ ++R R + KV+ ++ E
Sbjct: 201 AESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAE 260
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+ S + P + P Y + +I+ P A + + ++MR+++N
Sbjct: 261 ARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI 320
Query: 186 DV 187
V
Sbjct: 321 KV 322
>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 282
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 93/182 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ LG+ L
Sbjct: 101 KKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLGIDL 160
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ +
Sbjct: 161 DIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRALTSQ 220
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ LP + ++ F P M L P G L V L+G + + N
Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKITNI 280
Query: 186 DV 187
DV
Sbjct: 281 DV 282
>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
Length = 300
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 95/182 (52%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+ +R +F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L
Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S + R + P E FF+ I GG L +A L R+L D + ++ K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ ++P ++ + +P + ++ DP G ++L L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293
Query: 182 MI 183
++
Sbjct: 294 LV 295
>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 282
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 98/187 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++
Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AL+ + + ++ LP + ++ F M L ++P G L V +G +
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275
Query: 181 LMINFDV 187
+ N DV
Sbjct: 276 RITNIDV 282
>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
DSS12]
Length = 311
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 90/172 (52%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
+F FP L I R+V AG+ V A+A + + EF + + +G+SL +++
Sbjct: 135 QFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQTLE 194
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ +P FF+ + + + GG L E L +L R L D +K K+++L+ E + +A
Sbjct: 195 QACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRMTA 254
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
I+ SLP + ++++F +P VL N GH +L + + +G+ ++ ++
Sbjct: 255 LILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINML 306
>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
Length = 281
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 92/158 (58%)
Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
G+ VS A+ IV S P+ EF ++ Q LG+S +++R+ + +P + + + +
Sbjct: 124 GVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALARLSQRVPSEASALVAAALR 183
Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
V + GGNL+E L ++R LR+R ++ KV+AL+ + + AWI+G+LP ++ ++ P
Sbjct: 184 VATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAWIVGALPLLLAAVLDRMEP 243
Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
M +L + P G +L V A G++++R +++ D+
Sbjct: 244 DAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281
>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 294
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H
Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164
Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284
Query: 178 VMRLMINFD 186
++R + F
Sbjct: 285 LIRQLTKFK 293
>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 294
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H
Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164
Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
+V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284
Query: 178 VMRLMINFD 186
++R + F
Sbjct: 285 LIRQLTKFK 293
>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
Max13]
gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
K40]
gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 295
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 94/179 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLWRMLR 293
>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 295
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 94/179 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLWRMLR 293
>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
Length = 303
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+SA II +LP ++ FTSP N ++ + G + LIG + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299
>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 303
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+SA II +LP ++ FTSP N ++ + G + LIG + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299
>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 303
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+SA II +LP ++ FTSP N ++ + G + LIG + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299
>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
Length = 300
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 94/182 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
++L+ +R F + FP+AL+I++ +V AG + A++ + + + EF+ + + L
Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S + R + P E FF+ + GG L LA L R+L D + ++ K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ ++P ++ + +P +N ++ DP G ++L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293
Query: 182 MI 183
++
Sbjct: 294 LV 295
>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 322
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
D P+A++++VRS+R G P++ A+ + + DP+ +EF + + G ++ +S+ +
Sbjct: 149 DQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVVDSLRDLA 208
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
+ +Q++ F + +S+Q GGNL+E L L++++R R + +V+A++ E K S +
Sbjct: 209 ERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPKWSGVFL 268
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187
+ P V ++ +P Y + + + P + F L+G ++ M++M V
Sbjct: 269 SAFPVAVLVVIQVVAPTYYDNVKDSP--SFVPAALIVFALLGANVLFMKIMTTIKV 322
>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 300
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+ KR F + FP+AL+I++ +V AG + A+ + + + EF+R+ + L
Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S + R + P E FF+ I GG L LA L R+L + + ++ K A
Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ +P L+ + +P ++ +++DP G LL +G+ ++ L
Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293
Query: 182 MIN 184
++
Sbjct: 294 LVK 296
>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291
>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291
>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 294
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291
>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
Length = 300
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 94/182 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L+ +R F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L
Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S + R + P E FF+ + GG L LA L R+L D + ++ K A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ EA+ SA I+ ++P ++ + +P +N ++ D G ++L L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293
Query: 182 MI 183
++
Sbjct: 294 LV 295
>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
Length = 309
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++ K L P LD +VR + G V A V + P+R +VI Q G
Sbjct: 128 IRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGKE 187
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +++ +M R L E+ S+V+ + + GG + + +RDR+ + ++ ALS
Sbjct: 188 LDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSA 247
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G LP V ++ + GY+ ++ DP G +L AA + G
Sbjct: 248 ETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAG 298
>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 309
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 97/184 (52%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K I K+ +F +AL I+ +RAG ++ A+ + DP+ SEFR
Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ + +S++ M +++ + + +Q Q+GGNL+E L N+S+ +RDR +K V+
Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ + + S I+G +P + ++ SP Y ++ GH+++ ++ +G + +
Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302
Query: 181 LMIN 184
+++
Sbjct: 303 KIVD 306
>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
Length = 330
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
K+L A +++ R +R G V++A VG DP+ EF R + G+ +
Sbjct: 157 KYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAFR 216
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
M + E+ F +++Q Q GGNLSE L L+ ++R R ++ K++AL+ E + +
Sbjct: 217 EMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQS 276
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ LP V ++YF + Y L+ R +LLG + +G + +R ++NF+
Sbjct: 277 RTLTVLPVVVFAMMYFLNRPYAEGLLAQWR--LLLGTVTC-VAVGTLWIRNIMNFE 329
>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
Length = 302
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + L PN LD +VR G ++ + + + P++ ++ Q+ GL L
Sbjct: 122 RKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAGLEL 181
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ R+ R L E ++V+++ GG L L++ LRDR+ ++ A+S E
Sbjct: 182 DQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAMSSE 241
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
A+ SA + L ++ ++ +P Y+ + ND G MLL VA + G ++ M+
Sbjct: 242 ARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRMVK 300
>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 309
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 88/169 (52%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R AKF + + +++ +R G V +V ++ P E R++ +G
Sbjct: 129 RRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGKDSR 188
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+ + M ++ + S I + ++GG+L+E L ++ +R+R +K ++++LS E
Sbjct: 189 LAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEG 248
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
K SA+++ ++P V+ ++ F + GY+NV + P G ++L +A +G
Sbjct: 249 KMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVG 297
>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 90/176 (51%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + +D G ++L +A A + G +V+ M+
Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRML 291
>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 303
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 93/180 (51%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+++R + P +D + R++ G V AV + P+R+ RV+ LG
Sbjct: 122 LQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGAG 181
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++++ + ++E+ + I + S G + E L ++ +++R ++ + ++ A++
Sbjct: 182 FADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTG 241
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E K +AW++ P + ++ +PGY+++++NDP G ++ A A ++G+++ M+
Sbjct: 242 ETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMMK 301
>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
Length = 319
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 88/170 (51%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
KF + + L ++ ++RAG A +I + P+ E + V+ +LG +L ++
Sbjct: 143 KFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESALD 202
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
M R + + T + +Q Q+GG+L+ L +S + +R M+ +V L+ + + S
Sbjct: 203 NMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG 262
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ LPF ++ ++ F P Y+ L+ D G +++G+A LIGI ++
Sbjct: 263 IVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIK 312
>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 4/178 (2%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYF--TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP +ST YF +P Y+ + +D G ++L A A G +V+ M+
Sbjct: 236 MTAVVLALLP--ISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 291
>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 321
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K A+ P LD VR V G V A + + DP++S + G+ L
Sbjct: 137 QKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 196
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E
Sbjct: 197 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 256
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAW++ LP V L+ + Y + +D G ++GVAAA + G++++ +
Sbjct: 257 TRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLYRLAKL 316
Query: 186 D 186
D
Sbjct: 317 D 317
>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 307
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG
Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + P FF + Q GG L E + L+R++ + ++ K AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301
Query: 183 I 183
+
Sbjct: 302 M 302
>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 307
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG
Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + P FF + Q GG L E + L+R++ + ++ K AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301
Query: 183 I 183
+
Sbjct: 302 M 302
>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 95/186 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ + ++R KF+D + L I+ ++AG +++ +V +P+ EF +V+ +
Sbjct: 106 RMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA
Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + I+ +PF + + P ++ + N G +LL +IG ++++
Sbjct: 226 LTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIKK 285
Query: 182 MINFDV 187
++ V
Sbjct: 286 LVTIKV 291
>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 308
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 1/180 (0%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H +++ K L P LD +VR + G V A + + P+R + + Q G
Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL
Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
S E + SAW++G LP V+ ++ + GY+ ++ DP G +L AAA + G +M+ RL
Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304
>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 293
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + +D G ++L A A G +V+ M+
Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 290
>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 294
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291
>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291
>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 304
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 93/181 (51%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +++ KF +FP+AL+I+ ++ +G + A + Q ++ V +EF+ + E +G
Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + R P E FF++ I + GG L + + ++R++ D + ++ K AL
Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ASA II LP ++ FTSP + ++ +P G + IG + + L+
Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299
Query: 183 I 183
+
Sbjct: 300 L 300
>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 88/176 (50%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291
>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
Length = 281
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K LIKKR K + FP+ L + ++++G + ++ +I S P+ EF + L
Sbjct: 95 KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S+ ES++ +++ P +S F T++ V + GGNL+ L LS +R+ + K+ A
Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ +++ +WI+ LP + ++ +P N G+ L + + G + M+
Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMK 273
>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
Length = 304
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 92/180 (51%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +++ KF ++FP+AL+I+ ++ +G + A + Q + V +EF+ + E +G
Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + R P E FF++ I + GG L + + ++R++ D + ++ K AL+
Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA II LP ++ FTSP + ++ +P G + IG + + ++
Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300
>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 296
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 87/179 (48%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +L+ +R + +AL ++ +RAGL V A+ ++V + PV EF +++
Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ L E + + +P ++ F + I++ + GGNL+E + ++R+R +K K+
Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ + I +P+ + + + + P + + P G +L A AF G V+
Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVI 288
>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 305
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300
>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 312
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+++ K L P LD +VR + G V A + + P+R + + Q G
Sbjct: 131 VRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQRAGKE 190
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +++ +M R LQE+ ++V+ + + GG + + +RDR+ + ++ ALS
Sbjct: 191 LDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELMALSA 250
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173
E + SAWI+G LP V ++ + GY+ ++ DP G + L +A AFML
Sbjct: 251 ETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFML 305
>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
Length = 338
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 6 KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++R A + P+A+ ++ +VR+GLPV +A + + P +F V +LG
Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ + R + E + F+ ++VQ + GG+L+E L NL +R R + A+ +AL+
Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
E S+ + P ++Y ++P +++L DP G+ LL A A +L+G +V+ M+
Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMV 332
>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 305
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300
>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 322
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K A+ P LD VR V G V A + + DP++S + G+ L
Sbjct: 138 QKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 197
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E
Sbjct: 198 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 257
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAW++ LP V L+ + Y + ND G ++ AAA + G++++ M
Sbjct: 258 IRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLYRMAKL 317
Query: 186 D 186
D
Sbjct: 318 D 318
>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 305
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300
>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
Length = 282
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 97/182 (53%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R +F + P+ L + ++RAG + A+ IV QS P+ EF ++ Q +G+
Sbjct: 101 KLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQRMGIGF 160
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ + R MP + + +++ +Q GGNL+E L +++ LR R + ++VQAL+ +
Sbjct: 161 EQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQALTSQ 220
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ AWI+ LP ++ ++++ P M L P G ++ ++GI +R ++
Sbjct: 221 GRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIRRIVAI 280
Query: 186 DV 187
+
Sbjct: 281 TI 282
>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 321
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 91/187 (48%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ I +R F + L ++ S+RAG + +I + P+ +EF V+
Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG ++ +++ M + + ++ S T + +Q Q+GGNL+ L + + +R ++ +V
Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
L+ + K S ++ +P + TSP Y+ L+ G M +G A +IG +++
Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314
Query: 181 LMINFDV 187
+++ +
Sbjct: 315 RIVDIKI 321
>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 318
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+A D++ R++RAG V A VI + P++ EF E QHLG+ ++ + R
Sbjct: 150 LPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRDLARR 209
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
+ E+ F + + + GGNL+E L NL+ +LR R + +++AL+ E + A ++ +
Sbjct: 210 TSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAVVLIA 269
Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
LP + ++Y + Y VL++ P MLL LIG + +R +I+ +
Sbjct: 270 LPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317
>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 95/185 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ L ++ +F P +D ++R++R G P++D ++ Q + F ++ + +
Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G +++ + + + + E F + V+S+Q + GG LSE LA L LR R+ + A +Q
Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
++ E++ +A ++ +LP + +++ T + L+ G +LG + + +G+ ++R
Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288
Query: 182 MINFD 186
+
Sbjct: 289 LTRLQ 293
>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 96/186 (51%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ + +KR A+F+D + L I+ ++AG +++ +V +P+ EF +V+ +
Sbjct: 106 RMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA
Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + I+ +PF + + P ++ + + G +LL +IG ++++
Sbjct: 226 LTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIKK 285
Query: 182 MINFDV 187
++ V
Sbjct: 286 LVTIKV 291
>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 306
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 1/181 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64
KKR+ +F +AL +I ++R G +++ + +P+ SE +RVIE + +S
Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L ++ R+ + E +T + +Q + GGNL+ + ++ + R +K KV++ +
Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
A+ SA + ++PF V + SPGYM+ P ++ AA IG+ ++ M
Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302
Query: 185 F 185
F
Sbjct: 303 F 303
>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 310
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 10/186 (5%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR F P ++ + +AGL + A+ + + +DP +E R V E+ +G
Sbjct: 129 EKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIKVGQPF 188
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E+++ + + MP +E+ + + V ++ GG L AL N+S L +RK + +V+ + E
Sbjct: 189 EEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVRTILSE 248
Query: 126 AKASAWI-----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++AW +GSL F ++ L+ PG + + G ++LG A IG +V+R
Sbjct: 249 TTSTAWTLLLMGVGSL-FLLNALM----PGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303
Query: 181 LMINFD 186
M D
Sbjct: 304 RMSRID 309
>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 310
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 94/181 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR ++ P +D++ RS AG + A+A++ ++ P+ EFRR + LS+
Sbjct: 129 KKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLDMNLSV 188
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ + + L ++ ++ + + + GGNL L ++ ++RDR N + +++A +
Sbjct: 189 PAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGA 248
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ASA ++ + ++ P +++ L DP G++LL +A +IGI+ + ++
Sbjct: 249 GRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVSTLLRT 308
Query: 186 D 186
D
Sbjct: 309 D 309
>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 308
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+++ K L P LD +VR + G V A + + P+R + + Q G
Sbjct: 127 VRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAGKE 186
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ ALS
Sbjct: 187 LDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSA 246
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173
E + SAWI+G LP V+ ++ + GY+ ++ DP G + L +A AFML
Sbjct: 247 ETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFML 301
>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 198
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 87/176 (49%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + + LD VRS+++G ++DAV + + P++ R+ LG+SL +
Sbjct: 20 RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ E F+ + V + GGN SE + NL +++RDR+ +++A++ E +
Sbjct: 80 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+
Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 195
>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 281
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 99/186 (53%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K+ K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L
Sbjct: 96 KYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVKL 155
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ L E++ M + + ++ ++ QLGGN++E +S ++R+R ++ K+ A
Sbjct: 156 GVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDA 215
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
L+ + K WI+ S+P + ++ P M +++ G++L+ V A ++GI+++R
Sbjct: 216 LTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIRR 275
Query: 182 MINFDV 187
++N D+
Sbjct: 276 IVNIDI 281
>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
Length = 293
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 82/156 (52%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + P LD +VRS+ AG + DA+ V + DP+R F LG+ L
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
E++ + ++E+ + +SV + GGN ++ L + R++ +R+ + ++ A++ E
Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
+ SA+++ +P + + ++PGY+ + D G
Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSG 268
>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
Length = 295
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 84/158 (53%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
E + SA+++ +P + + ++PGY+ + D G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269
>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
Length = 294
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 84/158 (53%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
E + SA+++ +P + + ++PGY+ + D G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269
>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 294
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 84/158 (53%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
E + SA+++ +P + + ++PGY+ + D G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269
>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 327
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K + P LD VR V G V A + + DP++S + G+ L
Sbjct: 143 QKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 202
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E
Sbjct: 203 ENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 262
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ SAW++ LP V L+ + Y + ND G ++ A A + G++++ M
Sbjct: 263 TRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMAKL 322
Query: 186 D 186
D
Sbjct: 323 D 323
>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
Length = 294
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ D ++ +R+ + +S SR
Sbjct: 123 FPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDPVTVFEDSYSR 182
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T+I GG + E ++ L RI+ D K M+ K +A++ EA+ SA
Sbjct: 183 Y----PYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSAM 238
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ S P + FT P + LINDP G +L LIG++++ ++
Sbjct: 239 IVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLM 290
>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 304
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L ++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G
Sbjct: 120 NLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIG 179
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + R P E FF++ I + GG L + + ++R++ D + ++ K AL
Sbjct: 180 EDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNAL 239
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ASA II LP ++ FTSP + ++ + G + A L+G + L+
Sbjct: 240 TSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWLI 299
Query: 183 I 183
+
Sbjct: 300 L 300
>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 306
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 88/175 (50%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +I KR L I S+R+G+ ++ A+A +G+ + + E +R+
Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S ++++ + + +P+ E + QLGGNL+E N+ + +R + ++
Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
A + +AK A + G +PF V ++ SP Y+ +++ P G M+L ++ + +G
Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLG 293
>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 303
Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 2/182 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L K+ +F D FP+AL+++ +V +G + A+ + VG S D V EF+R+ E LG
Sbjct: 119 LGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAI-IFVGASLDGKVGKEFKRMGEQLQLG 177
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + P FF + + GG L E + L+R++ ++++ K AL
Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ SA I+ S+PF ++ + SP ++ +P G +L IGI+ + L+
Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297
Query: 183 IN 184
+
Sbjct: 298 MK 299
>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
Length = 306
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M L +++ +F FP+AL+++ +V +G + ++ + V EF+R+ E
Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S + P + FF + Q GG L + + L+R++ D + ++ K
Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPIL 284
>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
Length = 289
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+ +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G +
Sbjct: 110 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 169
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+
Sbjct: 170 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 229
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R
Sbjct: 230 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 286
>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
Length = 304
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R KF D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G +
Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF++ I + GG L + ++RI+ + + ++ K AL+ EA+
Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
+SA II +LP ++ TSP ++ + G ++L+ F LI M++R
Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLIS-MILR 301
>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
Length = 304
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+ +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G +
Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDD 184
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+
Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R
Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301
>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 304
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
+ +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G +
Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 184
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+
Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R
Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301
>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 284
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 89/185 (48%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L K+R + D P+ L ++ ++R G + + + S P+ E V+ Q LG
Sbjct: 100 YLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQRLG 159
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ E++S + + Q+ + + + ++GGNL++ L L +R R M+ K++AL
Sbjct: 160 VPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRAL 219
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + K ++ +LP + + P L + RG +L +A ++G +R +
Sbjct: 220 TSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIRKI 279
Query: 183 INFDV 187
++ +V
Sbjct: 280 VSIEV 284
>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
splendidus LGP32]
gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
splendidus LGP32]
Length = 306
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + + R P FF + Q GG L E ++ L+R + + + ++ K AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298
>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
Length = 313
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
M+ K R A+ L P+ LD +VR G + A V Q+S P+R +
Sbjct: 129 MRRTTKLR-AQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 187
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ L ++S + + + S VI V ++GG + L + +RD + + ++
Sbjct: 188 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 247
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
A + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++
Sbjct: 248 ATTSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 306
>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
Length = 306
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + + R P FF + Q GG L E ++ L+R + + + ++ K AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298
>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 315
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 93/182 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR F++ P+ ++ + AGL + A+A+ + P E RV + +LG ++
Sbjct: 134 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLNLGRTV 193
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E
Sbjct: 194 DDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 253
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+A+ + L LV ++ G + + P G L+ ++ A +G +V+R +
Sbjct: 254 VNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIRRLGRI 313
Query: 186 DV 187
+V
Sbjct: 314 EV 315
>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
Length = 294
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
+F P +D ++R++R G P++D I Q + R R+ H L + + ++
Sbjct: 118 QFRTGLPEVIDGMIRALRVGAPLAD----IFQQVARQQRGLMSRLFAQMHDELQVGQPVA 173
Query: 71 RMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++R + + E F + V+S+Q + GG LS+ LA L LR R+ + A +Q ++ E+
Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+ SA ++ +LP + +++ T + L+ G ++G + + +G+ ++R
Sbjct: 234 RNSAKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIR 287
>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 318
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
K A+ L P+ LD +VR G + A V Q+S P+R + G+ L
Sbjct: 139 KLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSGMDLD 198
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + + S VI V ++GG + L + +RD + + ++ A + E
Sbjct: 199 RALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSET 258
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ SAW++G LP + L+ +SP + +++DP GH +L +A L G ++
Sbjct: 259 RMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 311
>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 304
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 91/180 (50%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G
Sbjct: 121 LKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+
Sbjct: 181 APDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA II LP ++ FTSP + ++ + G + L+G + L++
Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300
>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 289
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L+++R ++ P+AL +I +RAG+ ++ A+ +V + P+ EF + LG
Sbjct: 105 LLRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLG 164
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ L E++ + + + ++ + + ++ GG+L+EAL + +R + M+ K+ AL
Sbjct: 165 IPLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGAL 224
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + K A ++G LP + ++ P M L + P G L V A ++G++++R +
Sbjct: 225 TAQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRI 284
Query: 183 INFDV 187
+ DV
Sbjct: 285 VAIDV 289
>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 241
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + + P +D +VR + G A + + + P+R R G+
Sbjct: 60 LQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGVD 119
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S
Sbjct: 120 LDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSA 179
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAWI+G LP V T + +P Y + ND G ML+ +A L+G
Sbjct: 180 ETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLG 230
>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 291
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEF-----RRV 55
+I R K ++ +A+ VR L V ++++V + QSS P+ EF RR+
Sbjct: 104 IIDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRI 163
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
G ++ES++++ L E+ F T I + GG+L+ L+NL +R R +
Sbjct: 164 AN----GAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAV 219
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+V+ + + +ASAW++G LP V+++V S YM I +P G LL A + G
Sbjct: 220 MREVRGSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFG 279
Query: 176 IMVMR 180
+MR
Sbjct: 280 AFMMR 284
>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
damselae]
gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae]
Length = 306
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L K+ KF + FP+AL+I+ ++ +G + A+ V VG++ D V +EF + E LG
Sbjct: 123 LQKRERKKFEESFPDALNILTSAISSGESIIHAI-VFVGKTLDGAVGNEFSLMGERLQLG 181
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + P FF + GG L + ++ L+RI+ D + ++ K AL
Sbjct: 182 ESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKYAL 241
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ SA I+ ++PF ++ + SP ++ +P G +L IGI ++ L+
Sbjct: 242 TSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVWLL 301
Query: 183 I 183
+
Sbjct: 302 M 302
>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 306
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
++ +F FP+AL+++ +V +G + ++ + VG+S + V EF+R+ E +G S
Sbjct: 126 RQQKEFEMAFPDALNMLASAVSSGESLMHSI-IFVGKSLEGSVGEEFKRMGERLQMGESP 184
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ P + FF + Q GG L + + L+R++ D + ++ K AL+ E
Sbjct: 185 DTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSE 244
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
A+ SA I+ ++PF ++ + SP + ++N P+G +L
Sbjct: 245 ARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPIL 284
>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
Length = 295
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 93/182 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R+ KF+ P+AL + ++++GL + ++ +V +P+ EF +V+ +G L
Sbjct: 114 KNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYRIGTDL 173
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S + + + EV ++ I + +GGNL+ NL+ LR+ ++ K++A++
Sbjct: 174 NDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIKAMTAM 233
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ + ++P V+ + + M +L + G + LG+ +G+ ++ ++N
Sbjct: 234 GSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIKKIVNV 293
Query: 186 DV 187
DV
Sbjct: 294 DV 295
>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
Length = 318
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Query: 5 IKKRT----AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
I +RT A+ L P+ LD +VR G + A V Q+S P+R +
Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ L ++S + + + S VI V ++GG + L + +RD + + ++
Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
A + E + SAW++G LP + L+ SP + ++++P GH +L +A L+G ++
Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLL 311
>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
Length = 308
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
F +FP+AL+++ SV AG + A+ + + V EF+R+ E ++G S +
Sbjct: 132 FERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLNIGESTDAVFRK 191
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
+ P FF + V GG L + L+R+L + ++++ K +A++ EA+ S++
Sbjct: 192 ACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEARMSSY 251
Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLL 165
I+ ++PF + ++ SP + ++NDP G LL
Sbjct: 252 IVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLL 286
>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 283
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
++ ++RAG V AV V + P++ E ++ LG SL E++ R P E
Sbjct: 115 GVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPE 174
Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
+ +++ ++GG + +AL +++ +R+R +K +V+A + + SA ++G++P
Sbjct: 175 TRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLW 234
Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
+++F +PG++ L+ P G V A +++G ++
Sbjct: 235 CLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273
>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
Length = 317
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 3/184 (1%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H +RT P A I R++RAG + A+ ++ P+ EF E QHLG
Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
++ ++ MVR + + E+ F+ + VQ + GGNL+E L L+ ++R R ++ +V+AL
Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ E + A ++ ++P V + +P Y +VL +L+G A + IG ++ +
Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWE--HYEILIGCAIS-QCIGAFLISRI 312
Query: 183 INFD 186
+N D
Sbjct: 313 VNID 316
>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 330
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++K + + P +D +VR + G A + + P+R R G+
Sbjct: 149 LQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGVD 208
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S
Sbjct: 209 LDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMSS 268
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAWI+G LP V T + ++P Y L ND G ML+ A L+G
Sbjct: 269 ETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLG 319
>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 297
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 88/175 (50%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R ++ P +D + + G ++ A+ + + VRS V LG +
Sbjct: 116 QRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLELGAPV 175
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++A E
Sbjct: 176 ADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELKAAISE 235
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
AK S ++ +P ++ +P Y++ + DPRGH L VA +G++VMR
Sbjct: 236 AKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290
>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 304
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +++ F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G
Sbjct: 121 LKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLIGE 180
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ + R P E FF++ I + GG L + + ++R++ D + ++ K AL+
Sbjct: 181 DPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
EA+ASA II LP ++ FTSP + ++ + G + L+G + L++
Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300
>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 337
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 84/171 (49%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G
Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326
>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 316
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ L +R F P+ L + +RAG + A+ ++ P+ E R++
Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G L ES++ + R ++ + S I + ++GG+L+E L ++ +RDR +K +V+
Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
ALS E + SA ++ +LP + + +P Y V
Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVF 284
>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
Length = 337
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 84/171 (49%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G
Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326
>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 316
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 85/161 (52%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
+ +R A+F + L ++ S+RAG + AV + ++ P + EF R++ LG
Sbjct: 133 MTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVRLGR 192
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L +++ + ++ + + I + ++GG+L+E L +++ +R+R +K +V+ALS
Sbjct: 193 DLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVRALS 252
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
E + SA+++ +LP + + + Y+ L P G ++
Sbjct: 253 AEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIM 293
>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 297
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 69/121 (57%)
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K ++
Sbjct: 170 ELGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKREL 229
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+A EA+ S ++ +P L+ +PGY++ + DPRGH L VA A +G++VM
Sbjct: 230 KAAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVM 289
Query: 180 R 180
R
Sbjct: 290 R 290
>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 300
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R P AL + +VR+G +S+A ++ + P+ EF + LG +
Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++RM +PL E F+T + V + GGNLS +S RDR++++ + A++ ++
Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240
Query: 128 ASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM-I 183
SA+ ++G + V+ L + P Y+ + +P+G LL +A ++G I V R++ +
Sbjct: 241 LSAFGMVLGGI-IAVAFLTWL-EPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298
Query: 184 NF 185
N+
Sbjct: 299 NY 300
>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 281
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R +
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
+ ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230
Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
P + ++ P M L H L G AA +++ GI ++R ++ DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281
>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 321
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q
Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+
Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
S +A+ + ++ + +++F P ++ + + G ++ V A G MR
Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314
Query: 181 LMINFDV 187
M+ V
Sbjct: 315 SMMKVSV 321
>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 309
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H+I+ R K + P+ LD++ SV+AGL + A+ +V + P+ EFRR++
Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G++ S+ M R +Q+V F + +LG ++S+ L + +RD + +A+ Q
Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
A+ KA +I L FC+ ++
Sbjct: 273 AM----KAPVKMIFPLVFCIFPAIF 293
>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 287
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+
Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
S +A+ + ++ + +++F P ++ + + G ++ V A G MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280
Query: 181 LMINFDV 187
M+ V
Sbjct: 281 SMMKVSV 287
>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 302
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 88/178 (49%)
Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
T + ++D P +D + + + G + A+A + SS V + I LG L E+
Sbjct: 124 TEQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEA 183
Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
+ ++ + L E+S ++ I V + GG L+ L+N++ ++R+R + ++ A + E +
Sbjct: 184 LQQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRV 243
Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
SA ++ +P ++ ++ Y++ ++ RG L VA A LIG M + D
Sbjct: 244 SAKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301
>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 301
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KK+ +F + L ++ R+V AGL V A+ + + + EF + + LG+SL
Sbjct: 118 KKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGISL 177
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +P + +FS + + GG L E L NLSR + D + M KV++++ E
Sbjct: 178 RQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAE 237
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ +A + LP + +V + +L+ G +L AA + G
Sbjct: 238 PRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFG 287
>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 312
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT F+ P ++ + +AGL + A+ + V + DP R E RRV + LG SL
Sbjct: 132 KRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLALGRSLD 191
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L +
Sbjct: 192 DALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQV 251
Query: 127 KASA 130
K +A
Sbjct: 252 KVTA 255
>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 287
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+
Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
S +A+ + ++ + +++F P ++ + + G ++ V A G MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280
Query: 181 LMINFDV 187
M+ V
Sbjct: 281 SMMKVSV 287
>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
Length = 338
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R K + P+ LD +VR V G V A +G + P+R +V G+
Sbjct: 157 ISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVE 216
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 217 IDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAMSA 276
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G LP V + V T+P Y + + G ++L VA ++G
Sbjct: 277 ETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLG 327
>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 305
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L ++ +F + FP AL+++ +V +G + A+ + VG + D V EF+ + + LG
Sbjct: 122 LQRREKKQFEEAFPEALNMLTSAVSSGESIMHAI-IFVGTALDGEVGKEFKLMGDRLRLG 180
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + P FF + + GG L E + L+R++ D + ++ K AL
Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ EA+ASA I+G++PF L+ + SP ++ P G +L IGI ++
Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISII 297
>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 318
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q
Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+
Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
S +A+ + ++ + +++F P ++ + + G ++ V A G MR
Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311
Query: 181 LMINFDV 187
M+ V
Sbjct: 312 SMMKVSV 318
>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
Length = 311
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K + P LD +VR G + A V + +P+R R G+ L
Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + R LQE+ + VI V + GG L ++ +RDR+ + ++ ALS E
Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ SAWI+G LP + + + ++ DP G LL A IG
Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIG 300
>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
Length = 304
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K + +F N L +I R+V AGL V A+ + + EF + + LGLSL
Sbjct: 120 KMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLGLSL 179
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+S+ +P +FS + + GG L + L +LSR + D + M+ KV++L+ E
Sbjct: 180 RQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSE 239
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
+ +A + LP + +Y P + L N G +L A
Sbjct: 240 PRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYA 282
>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 308
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K + L P LD +VR + G V A + P+R+ + + Q G L
Sbjct: 128 RKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAGKDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + R + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 188 DAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAE 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+ RL
Sbjct: 248 TRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304
>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLRTGVE 208
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 209 IDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 268
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP + + V T+P Y+ + NDP G MLL A L G
Sbjct: 269 ETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAG 319
>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 302
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+++ +F L +I R+V AGL V A++ + + EF R+ + LG +
Sbjct: 119 RQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGHGM 178
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +P + +F+ + + GG L + L +LSR L D + M+ KV++L+ E
Sbjct: 179 KHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAE 238
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ +A + LP + +V + +P VLI G +L A ++IG + ++LM
Sbjct: 239 PRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLM 295
>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 275
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 83/169 (49%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R P+ L +I +RAG A+ V +S P+ EF ++ LG+ L
Sbjct: 95 RRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIRLGIDLD 154
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + + +P+ + + + + ++GGNL++AL +++ LRD+ M+ K++AL+ +
Sbjct: 155 VAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQG 214
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ ++ LP + ++ P M L P G L V AA L+G
Sbjct: 215 RMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLG 263
>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 289
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 92/177 (51%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+L ++AK +A+D+++ ++ AG V+ A+A + +SS P++ + ++ LG
Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + +PL+ FS+ ++V ++GG+L+ LA+ R +RDR + ++Q+
Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+++ S I L + ++ +V+ SP M +N G ++ + +GI+ M
Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWM 281
>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
Length = 293
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ +F + FP + I+ + +G + A+ S + EF + H L++
Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAI----HKRLAI 167
Query: 66 SESISRMV-----RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
E + + RY P +E FF T+I V GG + E + L R++ D K M+ K
Sbjct: 168 GEDANSVFEDSYSRY-PYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKS 226
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
A++ EA+ SA I+ S P + F P L+NDP G M+L
Sbjct: 227 AMTSEARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMIL 271
>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 320
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + L P LD +VR + G A + + DP+ ++ L
Sbjct: 141 KRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSASPDLG 200
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ ++ R L E + V + + GG L +S +RDR++ + ++ ALS E
Sbjct: 201 QAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEI 260
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ SAW++ LP V L+ + GY + ND G ++ VAAA +G ++
Sbjct: 261 RMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLL 313
>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 341
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 90/182 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+
Sbjct: 160 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLALGRSV 219
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + +L NL++ L DRK + +V+ + E
Sbjct: 220 DDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSE 279
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+A+ + L L+ ++ G + + P G +L+ ++ +G V+R +
Sbjct: 280 VNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIRRLGKI 339
Query: 186 DV 187
+V
Sbjct: 340 EV 341
>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 308
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + + Q G L
Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAGKDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL
Sbjct: 248 TRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304
>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
Length = 335
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
P+AL + AGL V A A + ++ P+R F V LG S+ E++ R R
Sbjct: 164 PDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELGRSVDEALERFRRAS 223
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
L E+SF + + VQ GG+ S + + + ++ ++ + +AK SA ++ +
Sbjct: 224 SLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQTAQAKLSAQVVSIM 283
Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
P + ++ PG+M+ G LL AAA + GI ++ +++ D+
Sbjct: 284 PIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRVLDVDI 334
>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
Length = 308
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
K T + + A ++ + ++G+ ++ + V+ + + P R EF+ + + LGL
Sbjct: 129 KYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGLDFE 188
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ M + + +E F + + +Q + GGNL++ L +++ L +RK ++ ++ + E
Sbjct: 189 RALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATAEQ 248
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ ++I+ ++P + ++ G+++++ P G +L+ + M + ++++R + N
Sbjct: 249 RFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVTNIK 307
Query: 187 V 187
V
Sbjct: 308 V 308
>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 291
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS----LSESISR 71
FP + I+ + G + ++ + + EF+ + + LG +S SR
Sbjct: 120 FPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPMSVFEDSYSR 179
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T+I GG + E + L R++ D K M+ K +A++ EA+ SA+
Sbjct: 180 Y----PYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEARMSAF 235
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVAAAFMLIGIMVMR 180
I+ S P + F P + L+NDP G + + G A MLI +MR
Sbjct: 236 IVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288
>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
Length = 295
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 9/183 (4%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ +
Sbjct: 113 QRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+S SR P +E FF ++I GG + E ++ L R + D M+ K +
Sbjct: 173 AMAVFHDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++
Sbjct: 229 AMTSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 224
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 83/171 (48%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R + + P+ LD IVR V G V A + + +P+RS V G+
Sbjct: 43 IQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLRGGVE 102
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 103 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 162
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP + + V T+P Y++ + NDP G LL VA L G
Sbjct: 163 ETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGG 213
>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 282
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 92/182 (50%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R A P+ L + ++RAG + A+ +V ++ P+ E ++ LG+ L
Sbjct: 101 KRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGIDL 160
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + R +P+ + + +++ ++GGNL+EAL +++R L + M+ K++AL+ +
Sbjct: 161 DIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALTSQ 220
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ LP + ++ F P M L ++ G + L V A +G + + N
Sbjct: 221 GRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKITNI 280
Query: 186 DV 187
DV
Sbjct: 281 DV 282
>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
Length = 281
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 89/185 (48%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+ + KR P L + +++G+ + +AV + + P+ E +I L
Sbjct: 95 RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L +++ R +P+ ++ +++ + GG S+ L L+ L ++ ++ + QA
Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
LS + + AW++ +P + L+ + P + L N G + LGVA LIG M+++
Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274
Query: 182 MINFD 186
++N D
Sbjct: 275 ILNTD 279
>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 326
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K + P+ LD IVR V G V A + + P+R V G+
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVE 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E V+ + + GG L +S +RD ++ + ++ A+S
Sbjct: 205 IDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMSA 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++ +P V + V TSP Y + ND G L+ +A A +G
Sbjct: 265 ETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMG 315
>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
[Achromobacter xylosoxidans A8]
gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
[Achromobacter xylosoxidans A8]
Length = 281
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 81/148 (54%)
Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
+V QS P+ EF ++ Q +G+ ++ + MP + + + +Q GGNL+
Sbjct: 134 VVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGGNLA 193
Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
EAL ++++ LR R ++AK+ AL+ + + AWI+GSLP + ++ P M +L + P
Sbjct: 194 EALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLWHTP 253
Query: 160 RGHMLLGVAAAFMLIGIMVMRLMINFDV 187
G +L + A G++++R ++ D+
Sbjct: 254 VGWGVLTIVAVLETTGMLLIRRIVRIDI 281
>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 286
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + L P +D + R+ R G + + ++ + P+ E R + +G++++
Sbjct: 104 RRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQMGVTMN 163
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + + + +T +SV Q GG+L L L+R LRDR +++A++ +
Sbjct: 164 EALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLRAITAGS 223
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
+A+A ++ LP + F P Y+ L+ G +
Sbjct: 224 RATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFI 261
>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 257
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRV 55
+I++R F +AL + +V+AG V AV V G+ +D V EFR +
Sbjct: 67 RMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIV-EEFRYI 125
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
QH+ + L E + ++++ F++V + GG+++ + +SR+L D+ ++
Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----AAA 170
K +++A K+ I+ +P + + TSPG+++VL +P G + + AAA
Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245
Query: 171 FML 173
+ L
Sbjct: 246 YWL 248
>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 290
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%)
Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
F D FP L ++ +V AG + A+ + F R+ +LG +
Sbjct: 115 FEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERVFND 174
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
+E FF V+ V Q GG L + LSRI+ + KNM + A++ EA+ SA
Sbjct: 175 AWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAK 234
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ SLP + + SP + +++DP G ++L A IG++++ +++
Sbjct: 235 IVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILL 286
>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 307
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 92/177 (51%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++RTAKF++ P ++ + AGL + A+A++ + +P RSEF +V G SL
Sbjct: 126 QRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLRFGASL 185
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + ++ +EV+ + + V ++ GG+L AL ++ L +RK + +V + +
Sbjct: 186 QTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVTTILSQ 245
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ A+A++I + + + PG + ++ + G + L + +G +V+R M
Sbjct: 246 SLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIRQM 302
>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 314
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 88/181 (48%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+
Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSVD 193
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + R +P +E+ T +++ ++ GG + +L NL+ L +RK + +V+ + E
Sbjct: 194 EALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D
Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313
Query: 187 V 187
V
Sbjct: 314 V 314
>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
Length = 329
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R K + P+ LD +VR V G V A +G + P+R +V G+
Sbjct: 148 ISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTGVE 207
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + ++E +V+ + + GG L +S +RD + + +++A+S
Sbjct: 208 IDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSA 267
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G LP V + V T+P Y + + G ++L VA IG
Sbjct: 268 ETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIG 318
>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 199
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 9/186 (4%)
Query: 3 HLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57
L ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+
Sbjct: 14 KLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLAR 73
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
+ + +S SR P +E FF ++I GG + E ++ L R + D M+
Sbjct: 74 GEDVMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQ 129
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
K +A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+
Sbjct: 130 KKKAMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMF 189
Query: 178 VMRLMI 183
++ ++
Sbjct: 190 IIWWLM 195
>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 308
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + Q G L
Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAGKDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLIL 301
>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 295
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ +
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+ +S SR P +E FF ++I GG + E ++ L R + D M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
Length = 295
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ +
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+ +S SR P +E FF ++I GG + E ++ L R + D M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 295
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ +
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+ +S SR P +E FF ++I GG + E ++ L R + D M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 295
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ +
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+ +S SR P +E FF ++I GG + E ++ L R + D M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 206
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 25 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 84
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 85 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 144
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 145 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 195
>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 237
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 56 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 115
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 116 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 175
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 176 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 226
>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 296
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 1/172 (0%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
KF + A+ +I ++RAG V+ A+ + SDP++SEFRR+ G + E++
Sbjct: 120 KFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDIRAGTPVPEALD 179
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
++ +++ F+T + + Q GG+L++ N+ + +R R + +++ + + +
Sbjct: 180 KVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIES 239
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
I+ LP + + SP + + P G L+ +A + ++MR M
Sbjct: 240 QIMVGLPVFMMAALLAISPSHRE-FYSQPSGWALIALAVVLDTLAYLMMRKM 290
>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 211
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 30 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 89
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 90 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 149
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 150 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 200
>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 308
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + Q G L
Sbjct: 128 RRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAGKDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 188 DAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304
>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 215
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 34 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 93
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 94 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 153
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 154 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 204
>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 216
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 35 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 94
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 95 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 154
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 155 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 205
>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 312
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 84/169 (49%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT F++ P ++ + +AGL + A+ + V + +P + E RRV + +G SL
Sbjct: 132 KRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLAVGHSLD 191
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L +
Sbjct: 192 DALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQV 251
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
K +A + L ++ G ++ + G + + VAA G
Sbjct: 252 KVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAG 300
>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 220
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 39 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 98
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 99 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 158
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 159 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 209
>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 326
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K + P+ LD IVR V G V A + + P+R V + G+
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGVE 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E V+ + + GG L +S +RD + + ++ A+S
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++ LP V + V TSP Y + D G L+ +A A IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIG 315
>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
Length = 268
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + + P+ LD IVR V G V A + + P+R V G+ +
Sbjct: 88 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 147
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E
Sbjct: 148 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 207
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
+ SAW++G+LP + + V T+P Y + + DP G L+ +A
Sbjct: 208 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLA 250
>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
MSMB43]
Length = 221
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 40 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 99
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 100 IDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 159
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++G+LP + + V T+P Y + + DP G L V AF+L
Sbjct: 160 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 206
>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
Length = 302
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K + +F + L +I R+V AGL V A+ + + EF + + LGLSL
Sbjct: 118 KLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALGLSL 177
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +P +FS + + GG L + L LSR + D + M+ KV++L+ E
Sbjct: 178 RDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSLTSE 237
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ +A + LP + + + P + LIN G +L + + G +++
Sbjct: 238 PRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLIL 291
>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
Length = 258
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + + P+ LD IVR V G V A + + P+R V G+ +
Sbjct: 78 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 137
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E
Sbjct: 138 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 197
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
+ SAW++G+LP + + V T+P Y + + DP G L V AF+L
Sbjct: 198 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQL--VYLAFIL 243
>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 208
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + QE +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 209 IDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 268
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP + + V T+P Y+ + DP G MLL +A + G
Sbjct: 269 ETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAG 319
>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 256
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 75 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 134
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 135 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 194
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 195 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 245
>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
Length = 535
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 96/182 (52%), Gaps = 1/182 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+L ++R K + ++L ++ S++AG+ + A ++ P+ EF VI+
Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG S +++ M + + +S+ I +Q Q+GGNL++ + +R+ ++ K+Q
Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI-MVM 179
A++ + + + ++G +P+ + ++++ P M G ++L ++L+G+ MV
Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528
Query: 180 RL 181
+L
Sbjct: 529 KL 530
>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 306
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 74/132 (56%)
Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
++ S+RAGL +S ++++ + + P EF R+ LG+S ++S M + +P +E
Sbjct: 142 LLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGVSFDRALSDMEKRIPTREF 201
Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
F+ + +Q + GGNLS+ L ++ L DR+ + +++ ++ E + + ++ +P +
Sbjct: 202 RIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMTAEQRYVSILVPIMPVALV 261
Query: 142 TLVYFTSPGYMN 153
++ + G+++
Sbjct: 262 LMMNTMNKGFID 273
>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 316
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 135 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 194
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 195 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 254
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 255 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 305
>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
Length = 242
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 61 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 120
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 121 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 180
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++G+LP + + V T+P Y + + DP G L V AF+L
Sbjct: 181 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 227
>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 326
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K + P+ LD IVR V G V A + + P+R V G+
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E V+ + + GG L +S +RD + + ++ A+S
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++ LP V + V TSP Y + ND G L+ +A IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIG 315
>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 83 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 142
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 143 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 202
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 203 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 253
>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 326
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K + P+ LD IVR V G V A + + P+R V G+
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E V+ + + GG L +S +RD + + ++ A+S
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++ LP V + V TSP Y + ND G L+ +A IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIG 315
>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 1/178 (0%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+ KR + L P+ LD +VR + G A + V P+ ++ +
Sbjct: 136 LSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLRASPD 195
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
L ++ + R L E + V + ++ GG + L +S +RDR++ + ++ ALS
Sbjct: 196 LGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELHALSA 255
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-MLLGVAAAFMLIGIMVMRL 181
E + SAWI+ LP V L+ + GY + D G M+LG A L + RL
Sbjct: 256 EVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLYRL 313
>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
10229]
gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 306
Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 125 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 184
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 185 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 244
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 245 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 295
>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
Length = 299
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 2/172 (1%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
+ P L ++ +RAG + AV +V Q+ P+R EF RV L + +++ +
Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132
+ L E + V + GG+L L ++SR ++ DR+ ++A ++A E KASA +
Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRA-MEAACAEGKASARL 243
Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ ++P V LV + +P Y + DP G +LL + M +G +++R + +
Sbjct: 244 VTAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITD 295
>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
Length = 261
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 80 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 139
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 140 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 199
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++G+LP + + V T+P Y + + DP G L V AF+L
Sbjct: 200 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 246
>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 302
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K++ +F L +I R+V AGL V A++ + + EF R+ + LG +
Sbjct: 119 KQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGHGM 178
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +P + +F+ + + GG L E L +LSR L D + M+ KV++L+ E
Sbjct: 179 RYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLTSE 238
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ +A + LP + +V + +P +LI G +L A +++G + +++M
Sbjct: 239 PRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVM 295
>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 292
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 91/172 (52%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
+ + P+ ++ + R ++ GL ++ AV ++ P++ +RVI + +G+ L ++
Sbjct: 117 QLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDAFE 176
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ + ++ S+ ++ GG+++++L +L ++LR + + ++++++ E + +A
Sbjct: 177 KESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRITA 236
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
W+IGS P VS + +P + + G L + + L+GI+++ M
Sbjct: 237 WVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288
>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 335
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324
>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 335
Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324
>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 324
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + +P+R V G+
Sbjct: 143 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLRSGVE 202
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 203 IDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 262
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
E + SA+++ LP + + V T+P Y+ + NDP G LL +A
Sbjct: 263 ETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLA 306
>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 336
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++G+LP + + V T+P Y + + DP G L V AF+L
Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 321
>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
Length = 279
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K F D P + +I + +G ++ + + S P+ E + +LG S
Sbjct: 98 KTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLNLGESP 157
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ + E F T+I + Q GG L E ++ LS+++ K + K ++ +
Sbjct: 158 EAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQ 217
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ S II +P STL+YF P M + N P G M+ +IGI ++R M+
Sbjct: 218 TRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIRTML 275
>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 302
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 88/177 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K++ +F L +I R+V AGL V A++ + + EF R+ + LG +
Sbjct: 119 KQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALGHGM 178
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ +P + +F+ + + GG L E L +LSR L + + M+ KV++L+ E
Sbjct: 179 RYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSLTSE 238
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ +A + LP + TLV + +P +LI G +L A +L+G + + LM
Sbjct: 239 PRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295
>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 329
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 148 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 207
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 208 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 267
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G
Sbjct: 268 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 318
>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 292
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGL 63
KK F + + AL + S+RAG+ + AV + ++ EFR++ LG
Sbjct: 106 KKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSDIQLGF 165
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S+SE+ M +P +V + I +QS +GG+ +E++ ++ + R ++ +++ L
Sbjct: 166 SISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLF 225
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
K + + LP + +Y++SP Y L + G ++ +A M+IG + R +
Sbjct: 226 ASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYIDRKFL 285
Query: 184 N 184
N
Sbjct: 286 N 286
>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 327
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + P+ LD IVR V G V A + + P+R V G+
Sbjct: 146 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 205
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + +E +V+ + + GG L +S +RD + + +++A+S
Sbjct: 206 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 265
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++ LP + + V T+P Y+ + ND G LL AFML
Sbjct: 266 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 312
>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 257
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 76 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 135
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 136 IDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 195
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP + + V T+P Y+ + ND G +LL A L G
Sbjct: 196 ETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAG 246
>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 322
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + P+ LD IVR V G V A + + P+R V G+
Sbjct: 141 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 200
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + +E +V+ + + GG L +S +RD + + +++A+S
Sbjct: 201 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 260
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
E + SAW++ LP + + V T+P Y+ + ND G LL AFML
Sbjct: 261 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 307
>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 304
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 89/178 (50%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K++ ++ F+++FP+AL+I+ ++ +G + A + Q ++ V EF+ + E +
Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + + R P E FF + I + GG L + + ++R++ + ++++ K +
Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
L+ E++ SA I+G LP ++ F SP + ++ G + IG ++
Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFII 296
>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 404
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P+ LD IVR + G V A + + P+R V G+ +
Sbjct: 224 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLRSGVEID 283
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++S + +E+ V+ + + GG L +S +RD + + ++ A+S E
Sbjct: 284 RALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 343
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ S+W++G LP + + T+P Y + DP G +L +A A L G ++
Sbjct: 344 RLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 396
>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 356
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P+ LD IVR + G V A + + P+R V G+ +
Sbjct: 176 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLRSGVEID 235
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++S + +E+ V+ + + GG L +S +RD + + ++ A+S E
Sbjct: 236 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 295
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ S+W++G LP + + T+P Y + DP G +L +A A L G ++
Sbjct: 296 RLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 348
>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 386
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P+ LD IVR + G V A + + P+R V G+ +
Sbjct: 206 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRSGVEID 265
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++S + +E+ V+ + + GG L +S +RD ++ + ++ A+S E
Sbjct: 266 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVAMSSET 325
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ S+W++G LP + + T+P Y + DP G +L +A A L G ++
Sbjct: 326 RLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLL 378
>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 311
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 87/182 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+
Sbjct: 130 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLALGRSV 189
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + +P +E+ T + + +Q GG + +L NL+ L +RK + +V+ + E
Sbjct: 190 DAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVRTMLSE 249
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+A + +L L+ + G + + G +L+ +A +G +V+R +
Sbjct: 250 VHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIRRLGKI 309
Query: 186 DV 187
+V
Sbjct: 310 EV 311
>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 242
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+
Sbjct: 62 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 121
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E
Sbjct: 122 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 181
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D
Sbjct: 182 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 241
Query: 187 V 187
V
Sbjct: 242 V 242
>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 342
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+ KR + + P LD IVR + G V A + + P+R V G+
Sbjct: 160 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 219
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++S++ + ++E+ V+ + + GG L ++ +RD ++ + ++ A+S
Sbjct: 220 IDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSS 279
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E + S+W++ LP + + ++P Y + DP G L+ +A ++G ++ + N
Sbjct: 280 ETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLYRLAN 339
Query: 185 F 185
Sbjct: 340 L 340
>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 306
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
M L + F + FP+AL ++ +V AG + + + VG++ D PV EF+++ +
Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSF-IFVGRTLDGPVGKEFKKMGDRL 178
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
+G S + S+ + P FF + GG + E +A L+R++ + ++ K
Sbjct: 179 QMGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKK 238
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
AL+ EA+ SA I+G+LPF L+ + SP ++ P G +L IG+ ++
Sbjct: 239 YALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLI 298
Query: 180 RLMIN 184
L++
Sbjct: 299 WLLMK 303
>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 356
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+ KR + + P LD IVR + G V A + + P+R V G+
Sbjct: 174 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 233
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S
Sbjct: 234 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 293
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N
Sbjct: 294 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 353
Query: 185 F 185
Sbjct: 354 L 354
>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length = 314
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+
Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 193
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E
Sbjct: 194 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D
Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313
Query: 187 V 187
V
Sbjct: 314 V 314
>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
Length = 204
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R K + P+ LD IVR V G V A + + +P+R V G+
Sbjct: 23 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLRGGIE 82
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 83 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 142
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SA+++ LP + + V T+P Y+ + DP G LL +A ++G
Sbjct: 143 ETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVG 193
>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 359
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
+ KR + + P LD IVR + G V A + + P+R V G+
Sbjct: 177 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 236
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S
Sbjct: 237 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 296
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N
Sbjct: 297 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 356
Query: 185 F 185
Sbjct: 357 L 357
>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 88/185 (47%), Gaps = 5/185 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ ++ R + L P L+ + R+ G V + ++ + P+ E + +
Sbjct: 97 LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+ + ++++ + L + F + V Q GG+L L LS+ +RDR +++
Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHMLLGVAAAFMLIG-IM 177
A++ ++A+A ++ LP V L++FT P Y + L+ G +A +IG I
Sbjct: 217 AMTAASRATALLMVVLPPGV--LIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIW 274
Query: 178 VMRLM 182
V+R++
Sbjct: 275 VLRIL 279
>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
Length = 294
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ + +S +R+ + +S SR
Sbjct: 123 FPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPMAVFEDSYSR 182
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA
Sbjct: 183 Y----PYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEARMSAM 238
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ LP + F P LINDP G +L L G+ ++ ++
Sbjct: 239 IVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLM 290
>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 313
Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 88/182 (48%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR F+ P+ ++ + AGL + A+A+ + P E RV + LG S+
Sbjct: 132 QKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLTLGRSV 191
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E
Sbjct: 192 DDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 251
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
A+A+ + L L+ ++ G + + G L+ ++ +G V+R +
Sbjct: 252 VNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIRRLGKI 311
Query: 186 DV 187
+V
Sbjct: 312 EV 313
>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 306
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 90/181 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R F+ P ++ + AGL ++ A+A+ + P E RV G L
Sbjct: 125 QRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMRFGEDL 184
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+I + +P +EV+ ++ + V ++ GG+L AL +++ L +RK ++ +V+ + +
Sbjct: 185 DTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVRTVLAQ 244
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+ ++ +++ + F + L+ PG + + D G L V ++ + G +++R M F
Sbjct: 245 STSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIRRMTRF 304
Query: 186 D 186
D
Sbjct: 305 D 305
>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 294
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 86/179 (48%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R P ++ I+RS++AG +S AVA + PV +RV +G SL
Sbjct: 114 QRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMGASL 173
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
S+++ + + + + + + GG+ + + + +LR R+ + +++A++ E
Sbjct: 174 SDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAMTGE 233
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ SA ++ LP V +P Y ++ G LLG A A+ ++GI ++ M+
Sbjct: 234 TRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRMVK 292
>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 307
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + D P LD +VR + G ++ A +S+P+R + L
Sbjct: 128 RRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQELD 187
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + R +E+ + V+ V + GG L ++ +RD + ++ A S E
Sbjct: 188 AALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEI 247
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ SAW++ +P ++ + T+ + +DP G +L A L G
Sbjct: 248 RLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAG 296
>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
Length = 312
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 87/181 (48%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+RT +F++ P I+ + +AGL + A+ + + P E RV + +G S+
Sbjct: 132 RRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLAVGHSIE 191
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ +V +P +E+ + + + ++ GG + +L NL+ L RK + +++ +
Sbjct: 192 EALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A+++ ++ LV PG ++ + G + +A +G +++R + D
Sbjct: 252 TVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIRRLSKID 311
Query: 187 V 187
V
Sbjct: 312 V 312
>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 295
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ + +S +R+ + +S R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ P + F P + LINDP G +L L G+ ++ ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291
>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 305
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+++ + R A FP+ LD++ SV AGL A+A +V +S PV EFRRV++
Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G + E++ + +V F+ I QLG N+ + L S +R ++ + + Q
Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267
Query: 121 ALSMEAK 127
A+ + K
Sbjct: 268 AMKVPVK 274
>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
Length = 281
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
+ ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230
Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
P + ++ P M L H L G AA +++ GI ++R ++ DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281
>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
Length = 281
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
+ ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230
Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
P + ++ P M L H L G AA +++ GI ++R ++ DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281
>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ + +S +R+ + +S R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ P + F P + LINDP G +L L G+ ++ ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291
>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ + +S +R+ + +S R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ P + F P + LINDP G +L L G+ ++ ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291
>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 318
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
++ ++RAG+ + A+ + + +P RSEFR+ LG +L ++ M R + ++
Sbjct: 154 QLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLALHDMRRRVCSRD 213
Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
+ I VQ Q GGNL L ++ L +R+ ++ ++ +L+ EA+ SA ++ LP
Sbjct: 214 LDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSALVVMVLPIFF 273
Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAA 169
++ T G L G +LLGV A
Sbjct: 274 LLMIRDTPLG--EALFQTVIGWVLLGVFA 300
>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
FP + I+ + +G + A+ + GQ + +S +R+ + +S R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
I+ P + F P + LINDP G +L L G+ ++ ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291
>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 291
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P L+ +R + G A + +S+ P+R+ RV + LGL L E + R +
Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ L E++ +T + V + GG+L + L + +LR ++ + +++AL+ E + +A ++
Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+P + + T+P +++ + + G L +A L G VM M+
Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289
>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 305
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +K +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG
Sbjct: 122 LQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S E + P FF + GG L + ++ L+R++ D + ++ K AL+
Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
EA+ SA I+ + PF ++ F SP ++ G +L IG++++
Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLII 297
>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
Length = 284
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+ F DFP AL +I + +G ++ + + S P+ +EF + ++G S
Sbjct: 103 KRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLNVGESP 162
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ E F T+ + Q GG L E + LS ++ K + K ++ +
Sbjct: 163 EAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAVMTAQ 222
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ S II +P S L+YF P + + + P G M+ ++GI+++R M+
Sbjct: 223 VRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIRKML 280
>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 295
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
+ GQ +S RR+ + +S R P +E FF T+I GG +
Sbjct: 152 LTGQLGQEFKSIHRRLSIGEDPATVFDDSYDRY----PYKEFYFFITIIRNNLNKGGQIR 207
Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
E ++ L R++ D M+ K +A++ EA+ SA I+ P + F P + L+NDP
Sbjct: 208 EVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACFPVGFFFFMQFAMPENFDFLVNDP 267
Query: 160 RGHMLLGVAAAFMLIGIMVMRLMI 183
G +L L G+ ++ ++
Sbjct: 268 TGRYVLYYVFGSELFGMGIIWWLM 291
>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 308
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
LI RT K L P LD +VR + G V A + P+R+ + + Q
Sbjct: 122 LIWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQ 181
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++
Sbjct: 182 RAGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQREL 241
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMV 178
ALS E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+
Sbjct: 242 FALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVML 301
Query: 179 MRL 181
RL
Sbjct: 302 ARL 304
>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
Length = 187
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+ + F DFP L +I + +G ++ + + S P+ E + +LG S
Sbjct: 6 KRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLNLGESP 65
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ E F T+I + Q GG L E + LS+++ K + K L+ +
Sbjct: 66 ETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKSVLTAQ 125
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ S II ++P S L+YF + + ++P G M+ IGI V+R M+
Sbjct: 126 TRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIRKML 183
>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 305
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L ++ +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG
Sbjct: 122 LQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S E + P FF + GG L + ++ L+R++ D + ++ K AL+
Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
EA+ SA I+ + PF ++ F SP ++ G +L IG++++
Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLII 297
>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 308
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + + P LD +VR + G V+ A +G P+ +R G L
Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E
Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248
Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
+ SAWI+ LP ++ ++ F + +M + +DP G LL
Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 287
>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 293
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G
Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S R E F T+I + Q GG L E + LS ++ K + K +
Sbjct: 169 ESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + + S II +P S L+YF P + + + P G ++ + +IG++V+R M
Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288
Query: 183 I 183
+
Sbjct: 289 L 289
>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 322
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 83/187 (44%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + KR + P+AL + +AGL + + + P+ + F R
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+ +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314
Query: 181 LMINFDV 187
M+ +V
Sbjct: 315 RMLAVEV 321
>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 261
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 80 IHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGVE 139
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 140 IDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMSS 199
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
E + SAW++ LP + V T+P Y++ + ND G L +A + G
Sbjct: 200 ETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAG 250
>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 314
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + AGL + A+ + + P E V +G+ +
Sbjct: 133 QKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLAVGVPM 192
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ M + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 193 EDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + +A A +G +++R M
Sbjct: 253 VNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIRRMSRI 312
Query: 186 DV 187
DV
Sbjct: 313 DV 314
>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
Length = 322
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 83/187 (44%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + KR + P+AL + +AGL + + + P+ + F R
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+ +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314
Query: 181 LMINFDV 187
M+ +V
Sbjct: 315 RMLAVEV 321
>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
Length = 313
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + AV + + P E +V LG S+
Sbjct: 132 QKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLALGASM 191
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 192 DDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 251
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + VA A +G +++R +
Sbjct: 252 VNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIRRLSRI 311
Query: 186 DV 187
DV
Sbjct: 312 DV 313
>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
Length = 308
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + Q G L
Sbjct: 128 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 187
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 188 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 304
>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 311
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 85/181 (46%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT F+ P ++ + AGL + ++A+ + P E R V + +G +L
Sbjct: 131 KRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLGVGRTLD 190
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P +E+ + + + ++ GG + +L NL+ L +RK + +V+ +
Sbjct: 191 DALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVRTQLSQI 250
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
A+A+ + ++ LV PG ++ + G + + V+ +G + +R + D
Sbjct: 251 NATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIRRVSKID 310
Query: 187 V 187
+
Sbjct: 311 I 311
>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
Length = 321
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 92/182 (50%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H I++R + P+A+ I + AGL + + +S P++ F RV + G
Sbjct: 136 HAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAAG 195
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L E+++ + ++E++F +T + +Q Q GG++ + L +L N++ +
Sbjct: 196 SPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVN 255
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ +A+ SA ++ ++ ++ ++ S G++ + G ++L VA + + GIM +R +
Sbjct: 256 TAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRKI 315
Query: 183 IN 184
++
Sbjct: 316 LS 317
>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 319
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + Q G L
Sbjct: 139 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 198
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 199 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 258
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL
Sbjct: 259 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 315
>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
Length = 306
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
HL +K + + P LD +VR + G V+ A +G P+ +R
Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A
Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241
Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
LS E + SAWI+ LP ++ ++ F + +M + +DP G LL
Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285
>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 314
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT +F++ P I+ + +AGL + ++++ + DP E RV +G L
Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLAVGEPLE 193
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ +
Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A+ + L+ PG ++ + G + + V+ IG +V+R D
Sbjct: 254 TVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIRRFSRID 313
Query: 187 V 187
V
Sbjct: 314 V 314
>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
Length = 306
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
HL +K + + P LD +VR + G V+ A +G P+ +R
Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A
Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241
Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
LS E + SAWI+ LP ++ ++ F + +M + +DP G LL
Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285
>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 318
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++ + + P LD +VR + G V A + P+R+ + Q G L
Sbjct: 138 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 197
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E
Sbjct: 198 DAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 257
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
+ SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL
Sbjct: 258 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARL 314
>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E
Sbjct: 69 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 128
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
+ G++L E+++ + +P+ ++ +F + +Q + GGNL+E L +
Sbjct: 129 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIG 175
>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 316
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 84/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+
Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + A A +G +++R +
Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314
Query: 186 DV 187
DV
Sbjct: 315 DV 316
>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
Length = 272
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KK + F DFP L +I + +G ++ + + + P+ SE R + +LG S
Sbjct: 91 KKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLNLGESP 150
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ E F T+I + Q GG L + LS+I+ K + K ++ E
Sbjct: 151 ESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAE 210
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
+ S II +P S L+YF + + N P G +
Sbjct: 211 TRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKL 248
>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 223
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G
Sbjct: 39 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 98
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + E F T+I + Q GG L E + LS ++ K + K +
Sbjct: 99 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 158
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + + S II +P S L+YF P + + + P G ++ + +IG++V+R M
Sbjct: 159 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 218
Query: 183 I 183
+
Sbjct: 219 L 219
>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
Length = 316
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 84/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+
Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + A A +G +++R +
Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314
Query: 186 DV 187
DV
Sbjct: 315 DV 316
>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
Length = 293
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G
Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + E F T+I + Q GG L E + LS ++ K + K +
Sbjct: 169 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + + S II +P S L+YF P + + + P G ++ + +IG++V+R M
Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288
Query: 183 I 183
+
Sbjct: 289 L 289
>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 85/174 (48%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + P +D ++R+V AG + A+ S P+ +V LG +
Sbjct: 125 QRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIKLGGEI 184
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++S +R L+E+ + I V + G ++ E L +L +++ + + + +AL+ E
Sbjct: 185 DTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFRALTGE 244
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
++ +AW++G +P + + T+P Y L +DP G +L +A G++ +
Sbjct: 245 SRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLAL 298
>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 312
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 86/182 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR +F++ P I+ + +AGL + A+++ + P E +V +G S+
Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLAVGHSV 190
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ +
Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVRTQLSQ 250
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+A+++ + L+ SPG ++ + G + A A IG ++R M
Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIRRMSKI 310
Query: 186 DV 187
DV
Sbjct: 311 DV 312
>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 286
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 5/181 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K +KR A+F + +P+ +D I +VRAGL +S+A+A + + P+R FRR
Sbjct: 95 LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154
Query: 61 LGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+ES+ R+ + P+ + + I+ + GG+L L +LS LRD +++
Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVG-GGDLGRLLRSLSSFLRDDARTRSE 213
Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
+++ + A + + P+ V L+ F G + N P G +++G+ AA ++ V
Sbjct: 214 LESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRV 271
Query: 179 M 179
M
Sbjct: 272 M 272
>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 314
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 85/181 (46%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT +F++ P I+ + +AGL + ++++ + +P E RV +G L
Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLAVGEPLE 193
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ +
Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A+ + L+ PG ++ + G + VA IG +V+R + D
Sbjct: 254 TVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIRRLSRID 313
Query: 187 V 187
V
Sbjct: 314 V 314
>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
Length = 293
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K F DFP L +I + +G ++ + + P+ E + ++G S
Sbjct: 112 KNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESP 171
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ E F T+I + Q GG L E + LS+++ K + K ++ +
Sbjct: 172 ETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQ 231
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ S I+ +PF S +YF P + + N P G ++ + +IGI ++R M+
Sbjct: 232 TRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSML 289
>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
Length = 247
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 15/186 (8%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54
K LI++R K F +AL+ + +V+AG V +AVA + + +D V+ EF
Sbjct: 56 KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVK-EFH- 113
Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
IETQ + + + E + + +++V F+ V + GG+++ + +R+L D+
Sbjct: 114 YIETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKI 173
Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
+++ +++ KA I+ +P + + TSPG+++VL + L G+ A +
Sbjct: 174 DVRKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGN-----LFGMCAMTLC 228
Query: 174 IGIMVM 179
+GI V+
Sbjct: 229 LGIYVL 234
>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
BCW-1]
Length = 312
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 87/182 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF+ P I+ + +AGL + A+ + + P E +V + +G S+
Sbjct: 131 QKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLAVGHSI 190
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ +
Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+A+++ + L+ + G ++ + + G + VA A +G ++R M
Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIRRMSKI 310
Query: 186 DV 187
DV
Sbjct: 311 DV 312
>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 280
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 1/181 (0%)
Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G
Sbjct: 96 LSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNVG 155
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
S + E F T+I + Q GG L E + LS ++ K + K +
Sbjct: 156 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 215
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ + + S II +P S L+YF P + + + P G ++ LIG++V+R M
Sbjct: 216 TAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRKM 275
Query: 183 I 183
+
Sbjct: 276 L 276
>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
Length = 332
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
H + + + P+AL + +AGL + A ++ P+ F +V LG
Sbjct: 147 HAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIELG 206
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAK 118
S+ E++ R L E++F + + VQ GG+ + L RI +D + ++
Sbjct: 207 HSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVL----RIAQDSVDHALELRRT 262
Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
++ + +AK SA I+ ++P + ++ SP + N G LL +AA+ + GI++
Sbjct: 263 LRVQTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILI 322
Query: 179 MRLMINFDV 187
+R M+ D+
Sbjct: 323 VRRMLAVDL 331
>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 313
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R+A L P LD +VR+ R G + A+ + PVR F +++ Q G +
Sbjct: 135 RRSAAILA-LPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQSGTPID 193
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + + +QE++ +TV+ + + GG L ++ LR R +A+ ALS E
Sbjct: 194 QAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAET 253
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ A I+ + ++ + + Y+ + G MLL ++ G++++ M
Sbjct: 254 RLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLNRM 309
>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 312
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 84/181 (46%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R +F++ P I+ + +AGL + A+ + + P E RV + +G S+
Sbjct: 132 RRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLAIGHSIE 191
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
ES+ + +P +E+ + + + ++ GG + +L NL+ L RK + +++ +
Sbjct: 192 ESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+A+++ + LV PG ++ + G + VA +G +++R + D
Sbjct: 252 TVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIRRLSKID 311
Query: 187 V 187
V
Sbjct: 312 V 312
>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
Length = 300
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%)
Query: 3 HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+L K+ A+ F F AL+II +V AG + + + S V EF + +
Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G + + +E FF + + + GG + E +++L++++ + + M +
Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A + E +AS I+ +P + F SP +VL++DP G MLL A L+G+ +
Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294
Query: 181 LMIN 184
MIN
Sbjct: 295 TMIN 298
>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 314
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 84/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR +F++ P I+ + +AGL + AV + + P E +V +G S+
Sbjct: 133 QKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLAVGASM 192
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G ++ + P G + +A +G +++R +
Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIRRLSRI 312
Query: 186 DV 187
DV
Sbjct: 313 DV 314
>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
Length = 305
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K I KR + LD + AG + A+ + +S DP++S +V
Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
SLSE+ + + +P+ E S ISV S++ N+S +++ ++ +
Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
A + E+K +++IIG +P + ++ P Y+ + P G + +A L G+ ++
Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291
Query: 180 RLMIN 184
R + N
Sbjct: 292 RRISN 296
>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
Length = 245
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 89/191 (46%), Gaps = 6/191 (3%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVI 56
L KKR + +F + ++ + AG V +A + VI+ V EF ++
Sbjct: 55 ELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHIV 114
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
+ S+ +++S L +V F+ V + + GG L +++ + ++RD+ ++
Sbjct: 115 SQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVR 174
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
++ ++ + I+ +PF + + TSPG+ N++ N G +L+ + A + I
Sbjct: 175 QEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGAI 234
Query: 177 MVMRLMINFDV 187
+ R ++ ++
Sbjct: 235 AIARHIMKIEI 245
>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
[Rhodopirellula baltica SH 1]
gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
TadB [Rhodopirellula baltica SH 1]
Length = 297
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 68/136 (50%)
Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA
Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213
Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
+++R+ RDR+ + ++++ +++ S + L + V+ +++ P +M + G
Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSA 273
Query: 164 LLGVAAAFMLIGIMVM 179
+ +GI+ M
Sbjct: 274 AIAATIVLQAVGIIWM 289
>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
Length = 301
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR + + P+ LD IVR V G V A + + P+R V G+
Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+ ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S
Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151
E + SAW++G+LP + + V T+P Y
Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKY 301
>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 315
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 84/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+++ + P E +V + +G SL
Sbjct: 134 QKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLAVGTSL 193
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ +
Sbjct: 194 DDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQ 253
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+A+ + + L+ PG ++ + G + A ++G + +R
Sbjct: 254 VSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIRRFSKI 313
Query: 186 DV 187
DV
Sbjct: 314 DV 315
>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 314
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 83/182 (45%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+ + + P E +V +G S+
Sbjct: 133 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 192
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + +A +G +++R +
Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 312
Query: 186 DV 187
DV
Sbjct: 313 DV 314
>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 312
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 83/182 (45%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+ + + P E +V +G S+
Sbjct: 131 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 190
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 191 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 250
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G + + P G + +A +G +++R +
Sbjct: 251 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 310
Query: 186 DV 187
DV
Sbjct: 311 DV 312
>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
Length = 305
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + + P+ +D +VR + G V+ A + DP+ +R G L
Sbjct: 126 ERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLD 185
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ R LQE+ S+VIS+ + GG L ++ +RD + + ++ ALS E
Sbjct: 186 SALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEV 245
Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+ S WI+ LP + ++ F + +M + DP G +L A ++G ++
Sbjct: 246 RMSVWILSLLPIGLGLFIIVFNNDLFMG-MWRDPLGFKMLIGGAMLQVVGTYLL 298
>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
Length = 181
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%)
Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
A F DFP + +I + +G ++ + + + P+ E + +LG S
Sbjct: 4 AIFHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVF 63
Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
+ E F T+I + Q GG L E LS ++ K + K ++ + + S
Sbjct: 64 YDAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMS 123
Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
II +P S L+YF P + + N G ++ A LIG+ ++R M+
Sbjct: 124 VNIISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKML 177
>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
Length = 315
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
AGL + + ++V + PV+ E RV+ LG L +++ ++ + Q++ F +
Sbjct: 158 AGLSIPQGLRLVVQEMPAPVKIELGRVVREIELGRDLEGALNDLLERIHTQDMKVFINAL 217
Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
+Q + GG+L++ ++ ++ + +RK + ++A++ +A+ SA+ + + ++ ++
Sbjct: 218 IIQRRAGGDLAKVMSQMAATMEERKIIHQTIKAVTSQARTSAYALPIISLLIAFMLSKMI 277
Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
G+ ++ P G ++L + ++G++++R N V
Sbjct: 278 DGFYDLFTTLP-GMIVLALFVGLQVLGVVLVRKFSNIRV 315
>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 312
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 86/182 (47%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR +F++ P I+ + +AGL + A+ + + P E +V +G S+
Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLAVGHSI 190
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ +
Sbjct: 191 DDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+A+++ L L+ + G ++ + + G + VA IG ++R M
Sbjct: 251 VTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIRRMSKI 310
Query: 186 DV 187
DV
Sbjct: 311 DV 312
>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 269
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55
K LI ++ + L +F A+ I+ + AG + ++V + + + + EF +
Sbjct: 78 KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
+ ++ +S+ + + +++ F+ V+ + + GG L +A+ ++ D+ +
Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
K ++ ++ + ++ LP + + F+SPG+ N++ G M + V L
Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257
Query: 176 IMVMRLMINFDV 187
I + + ++N +V
Sbjct: 258 IYISKRLLNIEV 269
>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
Length = 295
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 9/183 (4%)
Query: 6 KKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
++R K D+ FP + I+ + +G+ + A+ P+ EF +R+ +
Sbjct: 113 QRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLARGED 172
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+S SR P + FF +I GG + E ++ L R + D M+ K +
Sbjct: 173 AMAVFQDSYSRY----PYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKK 228
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ EA+ S I+ P + F +P + ++NDP G ++L L+GI +
Sbjct: 229 AMTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVW 288
Query: 181 LMI 183
++
Sbjct: 289 WLM 291
>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
Length = 247
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 10/194 (5%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54
K LI++R F +AL+ + +V+AG V +AV + Q +D VR EF
Sbjct: 56 KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVR-EFH- 113
Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
+ETQ + + + E + ++++ F+ V + GG+++ + SR+L D+
Sbjct: 114 YMETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKI 173
Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
+++ +++ KA I+ +P + + TSPG++ VL +P G + + +
Sbjct: 174 DVRREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYG 233
Query: 174 IGIMVMRLMINFDV 187
+ + R +++ +V
Sbjct: 234 LSYWLGRRIVDIEV 247
>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
27064]
gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 313
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KRT F+ P ++ + +AGL + A+A+ + DP E V + +G SL
Sbjct: 133 KRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLAVGQSLD 192
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
+++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V +
Sbjct: 193 DALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVTTTLSQI 252
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
K +A + L ++ +PG ++ + G AAF L G+
Sbjct: 253 KVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQG--ATLAAFGLYGL 300
>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 306
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K L+ P+ LD++ SV AGL A+A ++ + P+ EF V++ +G
Sbjct: 153 IAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMKVGKQ 212
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+++ M + L +++ F I QLG ++ L S +R+++ +AK +A+
Sbjct: 213 KRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKA 272
Query: 125 EAK 127
K
Sbjct: 273 PVK 275
>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 282
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 82/166 (49%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P L + ++RAG + A+ + + P+ E ++ Q LG+S +++ R+
Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ L V + V GGNL++ L +++ LR + + +++AL+ + + AW++
Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+LP ++ ++Y P M L G +L+ + A ++G ++R
Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIR 275
>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 297
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 67/136 (49%)
Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA
Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213
Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
+++R+ RDR+ + ++++ +++ S + L + V+ +++ P M + G
Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSA 273
Query: 164 LLGVAAAFMLIGIMVM 179
+ +GI+ M
Sbjct: 274 AIAATIVLQAVGIVWM 289
>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 291
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
L + AKF F ++ + + GL + ++ + +DP ++ + +++ +G
Sbjct: 108 LAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQ-FADEHADPYIKKQSSLLLQRMSMG 166
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAK 118
S + ++ + V F+ I +Q +L++ L ++ ++ DR+ +KAK
Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226
Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
+ K +A G LP+ + L +T P + L+NDP G + VA L G +
Sbjct: 227 LSG----TKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLW 282
Query: 179 MRL 181
+RL
Sbjct: 283 LRL 285
>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 314
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 85/182 (46%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+
Sbjct: 133 QKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLAVGASM 192
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
+++ + L L+ G ++ + G + +A + +G +++R +
Sbjct: 253 VTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIRRLSRI 312
Query: 186 DV 187
DV
Sbjct: 313 DV 314
>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
[Achromobacter xylosoxidans A8]
gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
[Achromobacter xylosoxidans A8]
Length = 307
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + + P LD IVR + G + A + +P+R V+ET SLS
Sbjct: 129 KRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLRE----VVETAS---SLS 181
Query: 67 ES------ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
S ++++ R L+E+ + V+S+ + GG + L ++ +RD + ++
Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
A S E + SAWI+ LP ++ + + L DP+G +L A + G
Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGG 296
>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R + P LD++ SV+AGL A++ I + P E RR+ + +G+
Sbjct: 156 IQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIRMGVV 215
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++ M L++VS F T I +LG ++ + L N + +R+R+ K QA+
Sbjct: 216 RRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKA 275
Query: 125 EAK 127
K
Sbjct: 276 PVK 278
>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
Length = 260
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIETQHLGLSLSESI 69
F +AL + +V+AG +AV V + + EFR + L + + E
Sbjct: 83 FRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYIESQLRLSVPVEELF 142
Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
+ + ++++ F+ V + GG++++ + ++R+L D+ +K +++A K+
Sbjct: 143 LDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEVKKEIEATLAAKKSE 202
Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
++ +P + + TSPG+++VL +P G
Sbjct: 203 QMVMSIMPAGIICYLKLTSPGFLDVLYGNPFG 234
>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 289
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 92/184 (50%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K K + F D F +L +I R++ +G ++ ++ + +R EF R+I+ +
Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G +L E+++ P + + FS + + + GG++ ++L L++ L + ++ K
Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
+L+ E++ +A I+ LPF + ++ + L + G ++ + IG ++++
Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281
Query: 181 LMIN 184
MI+
Sbjct: 282 RMID 285
>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 311
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKR + P+ALD++ V AGL A+ + + DP+ EF+RV+ LG
Sbjct: 155 IKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTRLGRP 214
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+++ M+ + +V F + QLG ++ L S +R R+ +A+ +A
Sbjct: 215 RRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271
>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
Length = 247
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 3/171 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+K+ + A + S+ +GL ++ A+ + + +PVR+EF R G +
Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+E++ +V + + F + + V + G LS+ L +R++R+R ++ K+ + +
Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
+ SA ++ +P + + S + + P +A A +L GI
Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVPGAA---SIAVALLLDGI 234
>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 311
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG +
Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIRLGRT 210
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
E++ M +++V F + + QLG ++S+ L S LR R+ +A+ A
Sbjct: 211 RREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAA 267
>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 311
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG +
Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIRLGRT 210
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
E++ +V +++V F + + QLG ++S+ L S LR R+ +A+
Sbjct: 211 RREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAE------ 264
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGV 167
EA A + +P +V+ P V++ PR LGV
Sbjct: 265 EAAQKAPVKMLIP-----MVFLIFPALFVVILGPAVPRIMQALGV 304
>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 307
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
KR + + P LD IVR + G + A + +P+R L
Sbjct: 128 KRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAKELD 187
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ ++ R L+E+ + V+S+ + GG + L ++ +RD + ++ A S E
Sbjct: 188 AALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEV 247
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
+ SAWI+ LP ++ + + L DP G +L
Sbjct: 248 RLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKML 286
>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 308
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 82/181 (45%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
L +++ AKF P I+ S AGL + A+ V + DP EF + +G
Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
L ++ RM + +++ + + + + GG+L +L N+S L RK K +V+ L
Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
++ + +++ + L+ + G + L + G + + +A IG++ + ++
Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304
Query: 184 N 184
Sbjct: 305 K 305
>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
Length = 318
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ ++KKR ++ P+ALD++V +GL + A+ + + S + E V
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N +
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 278 EEIAAKIPTK 287
>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 298
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIETQHLGL 63
K R + D P LD IV +V AGL ++ + A + G P+ EFRR++ GL
Sbjct: 145 KHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKG-PLAQEFRRLLRDMRSGL 203
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+ +E++ RM M + ++S F+ + ++G +L +L + R+ + ++A+ AL
Sbjct: 204 ARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEKLALE 263
Query: 124 MEAK 127
K
Sbjct: 264 APVK 267
>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
Length = 318
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ ++KKR ++ P+ALD++V +GL + A+ + + S + E V
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N +
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 278 EEIAAKIPTK 287
>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
Length = 314
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
+ HL+KKR ++ P+ALD++V +GL + A VA V S E V
Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
+ G+ +S++ + ++ L E++ T+++ S++GG+L++ L + RD++N +
Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 274 EEIAAKIPTK 283
>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
profundum SS9]
gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum SS9]
Length = 322
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62
KKR + FP+ALD++V + AGL A VA + S + SE + V LG
Sbjct: 166 KKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLG 225
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ L ++S+ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A
Sbjct: 226 VPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 284
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
AK +I L C+ PG+ V I G ++ V AF
Sbjct: 285 ---AKIGTKMIFPLVTCI-------WPGFFTVAI----GPAIIAVLEAF 319
>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 296
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
K R + D P LD I SV AGL V+ + V + + + EF R++ GL
Sbjct: 143 KLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDIRAGLP 202
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ RM M + +++ F++ + ++G NLS+ L + R+ + ++A+ AL
Sbjct: 203 RAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEA 262
Query: 125 EAK 127
K
Sbjct: 263 PVK 265
>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
C54]
Length = 303
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
P LD IVR V G ++ A + +P+R L ++ ++ R
Sbjct: 138 QLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQVSR 197
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
++E+ + V+SV + GG + L ++ +RD +A++ A S E + SAWI+
Sbjct: 198 QYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWILA 257
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
LP ++ + + L DP G +L A + G ++
Sbjct: 258 LLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYIL 302
>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
K+R + L D P LD I V GL ++ A+ + V + + P+R+EFR ++ G+
Sbjct: 184 KRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGMP 243
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
E R + +QE+ T I + GG+L+ L + R+ + ++A+ AL
Sbjct: 244 RVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALEA 303
Query: 125 EAK 127
K
Sbjct: 304 PVK 306
>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 274
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--------VIVGQSSDPVRSEFRRV 55
L++KR + F AL + S+ AG V +A + G ++D VR EF +
Sbjct: 84 LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVR-EFAMI 142
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
G +L +S+ L+E++ F V S + GG+L + + S+++ ++ ++
Sbjct: 143 RHRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDI 202
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLI 174
+ ++ + + + + I+ ++PF + +P Y L + P G++ L + F+
Sbjct: 203 QQEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGC 262
Query: 175 GIMVMRLMI 183
G ++ +LM+
Sbjct: 263 GALIRKLMM 271
>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 306
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K P+ LD++ SV AGL A+ +V + + P+ EF R+++ +G
Sbjct: 152 ISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIRMGKP 211
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+++ + +++++ F T I +LG ++ + L S+ +R ++ +A+ QA+
Sbjct: 212 RRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKA 271
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
K + LV+F P +L+
Sbjct: 272 PIK-----------MLLPLVFFIFPTLFIILLG 293
>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
Length = 217
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ K F DFP L +I + +G ++ + + P+ E + +
Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + E F T+I + Q GG L E + LS+I+ +K + K
Sbjct: 91 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ + + S II +P S L+Y P + + P G ++ +IGI+++R
Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210
Query: 181 LMI 183
M+
Sbjct: 211 KML 213
>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
Length = 314
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ +++KKR ++ P+ALD++V +GL S A+ + + S E V
Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N +
Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 274 EEIAAKIPTK 283
>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 306
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 8/173 (4%)
Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
AL I SVR+ L + A+ DP+R E RV+ G +L+ + RM R
Sbjct: 134 RALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTD 193
Query: 78 LQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAKASAWII 133
+V + + +Q + GG ++ L A+ + LR + +K ++ + + W +
Sbjct: 194 SPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRL----AKWFV 249
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+ +++ T+ + P G ++LGVA G+ + + D
Sbjct: 250 ALAMPAIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302
>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 297
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR D P+ LD++ +V AGL A+A + ++ P+ E V+ ++G ++
Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ S + + + + F T + +LG L++ LA ++ +R +A+ +A
Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKA---- 259
Query: 126 AKASAWIIG 134
AKAS I G
Sbjct: 260 AKASPKIAG 268
>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
Length = 270
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ K F DFP L +I + +G ++ + + P+ E + +
Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + E F T+I + Q GG L E + LS+I+ +K + K
Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ + + S II +P S L+Y P + + P G ++ +IGI+++R
Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263
Query: 181 LMI 183
M+
Sbjct: 264 KML 266
>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
Length = 270
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIE 57
++ + +R A+ L D AL + S++AG + A+ + S P R IE
Sbjct: 77 VRDTLARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIE 136
Query: 58 TQ----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
LG + E++ + +PL+E++ + + GGN+ E + N+++++ DR
Sbjct: 137 LTAREVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRL 196
Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
++ ++Q L+ + + A I+ +P + +V T+P Y+ V G LG+
Sbjct: 197 AVEREIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGL 250
>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
Length = 296
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/178 (17%), Positives = 79/178 (44%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K++ F + FP L I+ + +G ++ + + + +EF + +LG +
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
+ R E FF++VI + + GG LS+ + + + + + +K + ++ +
Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ + ++ +P + +Y+ P + L + G ++ ++GI ++R MI
Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292
>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
Length = 247
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51
K +I+KR + F + L + S+ AG P+ A VG SD + E
Sbjct: 55 KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKA---FVGALSDLYVLYPSDDAYIVRE 111
Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
+ +I L +S+ E++S + ++ FS VI + + GGNL +A+ N SRI+ +
Sbjct: 112 TKIIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISE 171
Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
+ M +++ L K ++ +P + ++ T+ Y+N + G +AA
Sbjct: 172 KIEMAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGR----IAATL 227
Query: 172 MLI 174
LI
Sbjct: 228 CLI 230
>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 317
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60
I R K ++ FP+ALD++V V AG+ + A+ VG+ S P+ EFR +
Sbjct: 160 IGARKEKIMEGFPDALDLMVICVEAGMGLDQAINR-VGEEMKLSCPPISDEFRTLNMEMR 218
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G S E++ M L +V+ T++ Q G ++ +AL S +R ++ +A+ +
Sbjct: 219 MGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEK 278
Query: 121 A 121
A
Sbjct: 279 A 279
>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 307
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + P+ LD++V SV AGL A+ + +S P+ E RV++ +G S +
Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E++ M + ++EV F + S+LG ++ L +R R ++ +A+ M
Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAE----EMAQ 270
Query: 127 KASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
K ++ + C+ + ++ PG ++++
Sbjct: 271 KVPVKVMFPVVLCILPALIITVVGPGVLSIM 301
>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
91001]
gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
FV-1]
gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
32953]
gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
Angola]
gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 291
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ K F DFP L +I + +G ++ + + P+ E + +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + E F T+I + Q GG L E + LS+I+ +K + K
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ + + S II +P S L+Y P + + P G ++ +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284
Query: 181 LMI 183
M+
Sbjct: 285 KML 287
>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 300
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 10/182 (5%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K++ F + FP L I +G+ V++ I+ ++ ++ + + LS+
Sbjct: 119 KQKKIYFTETFPELLLIFNMGSVSGISVNE----ILKKAGQEIKGGLGKECDLIFRRLSI 174
Query: 66 SESISRMVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
E+I+ V Y Q S+ F ++ + GG L E + L++++ + M+ +
Sbjct: 175 GENINT-VFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKM 233
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
A++ E + S W++ +P YF +P + + G +++ A +GI +MR
Sbjct: 234 AMTGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMR 293
Query: 181 LM 182
M
Sbjct: 294 YM 295
>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 317
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
P LD++ SV AGL ++ + + + P+ E +RV + +G S E++ + +
Sbjct: 174 PEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEISMGKSRKEALIDLKERI 233
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
LQ++S F I QLG +S L S+ R ++ +A+ QA+ K
Sbjct: 234 DLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVK 284
>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 291
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ K F DFP L +I + +G ++ + + P+ E + +
Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + E F T+I + Q GG L E + LS+I+ +K + K
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ + + S II +P S L+Y P + + + P G ++ +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284
Query: 181 LMI 183
M+
Sbjct: 285 KML 287
>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
pseudotuberculosis IP 31758]
gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
pseudotuberculosis IP 31758]
Length = 291
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 76/183 (41%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ K F DFP L +I + +G ++ + + P+ E + +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG + E F T+I + Q GG L E + LS+I+ +K + K
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
++ + + S II +P S L+Y P + + P G ++ +IGI ++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284
Query: 181 LMI 183
M+
Sbjct: 285 KML 287
>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 283
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 78/162 (48%)
Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
S+++G+ + A + +V P+ EF + E G + ++ + + +S
Sbjct: 122 SIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADERLQVPRLSLIF 181
Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
I + + GG L+ + L+ R+ + ++ +V+ + + SA I+ +PF + L+Y
Sbjct: 182 QTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMFLMPFFICGLLY 241
Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
P + +L ++ G+++L +A A + +M+ +I D+
Sbjct: 242 LIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283
>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 268
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62
+KR + P +D ++R + AG + A+ + + P+ R +E+
Sbjct: 85 QKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVESGRDY 144
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L + S++ R PL +F + + S G + L +SR LR ++ M+ + A
Sbjct: 145 TGLIDDFSKLYRIPPL---TFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAA 201
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ E + +A LP + + + + +VL++ G +L + +++G +++ M
Sbjct: 202 TAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFRM 261
Query: 183 IN 184
+
Sbjct: 262 VQ 263
>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 329
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ H +KKR P+ALD++V +GL + A+ + + S E V
Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N +
Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 290 EEIAAKIPTK 299
>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 323
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62
K R K + P+ALD++V +GL + A+ + + S + E V G
Sbjct: 163 KDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFAKIQAG 222
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+++ +++S++V L E+ +++S S++GG+L++ L + + RD++ A+ A
Sbjct: 223 VTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIAA 282
Query: 123 SMEAK 127
+ K
Sbjct: 283 KIPTK 287
>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 314
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ H +KKR P+ALD++V +GL + A+ + + S E V
Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N +
Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 275 EEIAAKIPTK 284
>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 314
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ +
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
AK S I+ L FC+ S V P + V+
Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304
>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 313
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
++ KR +K P+ALD++V +GL + A+ + + S E V +
Sbjct: 156 MVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVN 215
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ +S++ + +++ L+E++ T+++ S++GG+LS+ L + RD++N + +
Sbjct: 216 AGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEV 275
Query: 121 ALSMEAK 127
A + K
Sbjct: 276 AAKIPTK 282
>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 326
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K +R + P+ +D++ +V AGL + AV + + PV +EFR+ ++
Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
LG+S E++ + L E+ F+ + +LG +L+ L + LR ++ +A+ Q
Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288
Query: 121 ALSMEAK 127
A+ K
Sbjct: 289 AMKTPIK 295
>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 349
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R A+ ++D P ALD+I + AG P+ A+ ++ G P+ +E V + LG S+
Sbjct: 165 QRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGASM 224
Query: 66 SESISRMV---------------RYMPL----------------QEVSFFSTVISVQSQL 94
+E+ R++ R +P+ E++ F+ + +
Sbjct: 225 AEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEES 284
Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
G L+ AL L+ R R+ + AL+ +A + L C L F + G + V
Sbjct: 285 GARLAAALGRLADQTRARRQER----ALTAARRAGVTAVAPLGLCF--LPAFVALGVVPV 338
Query: 155 LIN 157
++
Sbjct: 339 VMG 341
>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
Length = 220
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P ALD+ + +G P+ A++ + + + FRR + LG +L+E+++ +
Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALT---EF 135
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134
L + I + G L+++L L++ LR DR+ ALS +A W++
Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQ-----AALSHAHRAGVWMV- 189
Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
LP C+ L F + G + V+I+
Sbjct: 190 -LPLCLCFLPAFIAAGLLPVVIS 211
>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
Length = 315
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
PNALD I++ +S + +E V + +LG LS+S ++
Sbjct: 161 PNALDEIIKE---------------QNTSQVLINELITVKQNLNLGYPLSKSFMLAYEHL 205
Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
++E+ F+ +SV + GGN+ E L + + +K + K S + +
Sbjct: 206 QIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLTVGI 265
Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
P LV F +P + G ++ +A +F+L GI +
Sbjct: 266 PLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307
>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 281
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + +
Sbjct: 186 LT-SLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++ AK S +I + F + L+ +PG M VL N
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279
>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
Length = 314
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ +
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
AK S I+ L FC+ S V P + V+
Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304
>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 268
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54
K +I+KR ++ F + L I S+ AG V A + ++ + E
Sbjct: 76 KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
++ + ++ +++ + + L+++ F+ V + GGNL + N + I+ D+
Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
+K ++ L K ++ +PF + ++ T+ YM + + G +++ A + I
Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255
Query: 175 GIMVMRLMINFDV 187
G V + +++ +
Sbjct: 256 GYFVSKKIMDIKI 268
>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 281
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + +
Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++ AK S +I + F + L+ +PG M VL N
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279
>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 287
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
+ L KKR A + P LD + S+ AGL ++ A++ V + S P+R EF +VI
Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G+S ++S M + + E++ + ++ + G +L + L S R + +A+
Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250
Query: 120 QALSMEAK 127
+AL K
Sbjct: 251 KALEAPVK 258
>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
Y412MC10]
Length = 290
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+
Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRM 191
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
+ G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
A+ + E +S ++ + + +V +P +M
Sbjct: 252 AIARTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286
>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
Length = 314
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ + + KR ++ P+ALD++V +GL S A+ + + S E V
Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N +
Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 274 EEIAAKIPTK 283
>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 326
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54
K+ I KR D FP+ALD+++ V AG + A+ + + S P+ EF
Sbjct: 163 KYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEI 222
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
V G ++ + M + +Q+V+ F T + S G +++EAL S +RD++
Sbjct: 223 VSYEMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRI 282
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
+A+ +A + K + + ++ FCV L+
Sbjct: 283 SRAEEKANKLPTKLTLF---TMLFCVPPLL 309
>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 256
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 8/191 (4%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56
L K+R K L +F AL ++ + AG + +A ++ ++G+++ + EF+++
Sbjct: 67 LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENA-MISREFQKIS 125
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
E L + + + L E+ FS + SV + GG L + S ++ D+ +
Sbjct: 126 EGLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGIS 185
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
++ LS + I+ +PF + + +SP ++ +L G +L+ L+ +
Sbjct: 186 EEILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAV 245
Query: 177 MVMRLMINFDV 187
+ +++ +V
Sbjct: 246 RLSERILDIEV 256
>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
alkaliphilus HTCC2654]
gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
HTCC2654]
Length = 329
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56
+K I+ R A+ FPNALD++ S AG+ DA VGQS S + EF
Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGF-DAAMTRVGQSLATVSPAISEEFLLCQ 227
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
++++ M M + EVS F+ V+S + G ++++AL + +R+ + MK
Sbjct: 228 AEILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMK 287
Query: 117 A 117
A
Sbjct: 288 A 288
>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 306
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I+ R K L D P LD+I SV AGL A+A ++ + EF + ++ +G+
Sbjct: 152 IQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEITMGIE 211
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANL---SRILRDRKNMKA 117
++ M ++E+S F + + +LG +LS+ L ANL R + K MKA
Sbjct: 212 RKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREKAMKA 271
Query: 118 KVQAL 122
++ L
Sbjct: 272 PIKML 276
>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
Length = 323
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ + K+R K + P+ALD++V +GL + A+ + + S + E V
Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+++ ++++++V L E+ +++S S++GG+L++ L + + RD++ A
Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 278 EEIAAKIPTK 287
>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 295
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R+ L P+ LD++ SV AGL A+ +V +S P+ EF + +G
Sbjct: 144 RQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIRMGKPR 203
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
E++ M R + + +VS F + LG ++S L + +R ++ +A+ +A
Sbjct: 204 REALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKA 259
>gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae
FF5]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ +P Y+
Sbjct: 5 GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPNYLLH 64
Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
+ +D G ++L A A G +V+ M+
Sbjct: 65 MWDDESGKIMLSAAFALQATGCVVLWRML 93
>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
Length = 288
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57
++ ++R + + P+ +D++V + G+ ++A++ + + + + E V
Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
LG+SL +S RM ++EV ST + + G + EA+ LS +LR ++ +A
Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234
Query: 118 KVQA 121
+ +A
Sbjct: 235 EERA 238
>gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
10507]
gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
10507]
Length = 247
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRRVIE 57
I+++ + F + LD + +++AG V +A+++ + G+ +D R E R + +
Sbjct: 59 IREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTR-ELREMED 117
Query: 58 TQHLGLSLSESISRMVRYMPL------QEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
L LS + R+ +M L ++V F+ V + GG++ + L +++L D
Sbjct: 118 K----LKLSVPVERL--FMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGD 171
Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
+ +K +++A+ K+ ++ +PF + + TSPG++ VL + L GVA
Sbjct: 172 KIEVKKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGN-----LFGVA 223
>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
Length = 290
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 2 KHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
K L KK R + + + P L+ IV V AG V AV V ++ D P+ +E +R+
Sbjct: 132 KDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRM 191
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
+ G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRK 251
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ + E +S ++ + + +V +P +M
Sbjct: 252 AIGRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286
>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
Length = 233
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+HL K+R K P L + +R+G V A+ + G P+ E ++ + +
Sbjct: 46 RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQS-----QLGGNLSEALANLSRILRDRKNMK 116
G L++ + R +P+ FS + VQS + GG S+ L+ L+ ++++K
Sbjct: 106 GKPLTDCLEDWQRRVPV-----FSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIK 160
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-G 175
+ L+ +A+ A I+ +P + L+ + + + G +L VA M+I G
Sbjct: 161 ERQITLTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGG 220
Query: 176 IMVMRLM 182
MV R+M
Sbjct: 221 WMVKRIM 227
>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 292
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
M+ + ++ A L P LD + +V AGL V+ A+ V + D P+R EF V+
Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
GL +++ R + EVS I+ ++G L++ L S R + +A+
Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253
Query: 120 QALSMEAK 127
QA+ K
Sbjct: 254 QAMEAPVK 261
>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 308
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K ++KR+ + D P+ LD++ SV AGL A+A + + + EF R ++ +
Sbjct: 153 KIAMRKRSIQ--KDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMRM 210
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G+ E++ M + ++S F+T + QLG ++ + L S +R+++ + + Q
Sbjct: 211 GVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKR--RQRTQE 268
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
L+M+A LP LV+F P V++
Sbjct: 269 LAMKAPVKML----LP-----LVFFIFPAIFVVVLG 295
>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
Length = 179
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
P++ R+ LG+SL ++ E F+ + V + GGN SE + NL
Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61
Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
+++RDR+ +++A++ E + +A ++ LP
Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTALVLALLP 92
>gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842]
gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842]
Length = 327
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +R KF+++ + + I ++++ L V DA+ + +R E +
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G S++E++S + + P +E+ FF ++ V + GG +EAL +++ DRK + ++
Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258
Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
A + + + +A I+ +LPF F P ++L+ P G ++
Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFK----FFMPQAYSILMRTPLGSIVF 303
>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
Length = 257
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
K L +R + F A+ I+ S+ AG V +A A + + + + EF +
Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
+ ++ ++ L+E+ FS + +V + G L + + ++ DR +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169
+ ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245
Query: 170 AFMLIGIMVMRL 181
F+ I+ + L
Sbjct: 246 CFLAFKILDIEL 257
>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 264
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 88/193 (45%), Gaps = 7/193 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54
K +I+KR + F + L + S+ AG + + +++I S+ + E
Sbjct: 72 KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
++ + ++ ++ L+++ F V+ + GGN+ + + N S I+ D+
Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
+K ++ L K I+ +P + + ++ YM + +D RG +++ ++ A ++I
Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251
Query: 175 GIMVMRLMINFDV 187
+ + ++N V
Sbjct: 252 AYFISKKIMNIKV 264
>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
Length = 224
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62
KKR K + FP+ALD++V + AGL A VA + S + +E + V LG
Sbjct: 68 KKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCRKVRLG 127
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ + ++++ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A
Sbjct: 128 VPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 186
Query: 123 SMEAKASAWIIGSLPFCV 140
AK +I L C+
Sbjct: 187 ---AKIGTKMIFPLVTCI 201
>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 311
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ALD++ V AGL A+ + + DP+ EF+RV+ LG +++ M+
Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+ +V F + QLG ++ L S +R R+ +A+ +A
Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271
>gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
WAL-14673]
gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
WAL-14673]
Length = 257
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
K L +R + F A+ I+ S+ AG V +A A + + + + EF +
Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
+ ++ ++ L+E+ FS + +V + G L + + ++ DR +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169
+ ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245
Query: 170 AFMLIGIMVMRL 181
F+ I+ + L
Sbjct: 246 CFLSFKILDIEL 257
>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 296
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K+R + + P+ +D++V SV AGL + A++ + + P+ F R + LG S
Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+ ++ +P++EV F + +LG +SE L + + L+ + +KA+ A
Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHA 258
>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Burkholderia pseudomallei 1710b]
gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 319
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FST++ + G ++ +L LS LR ++ M
Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 271
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308
>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
Length = 290
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+
Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRM 191
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
+ G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ + E +S ++ + + +V +P +M
Sbjct: 252 AITRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286
>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 279
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
I R LD P +D+I V+AG+ V +V I +S+D + +++ +
Sbjct: 124 INTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEV 183
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
L E + + R M + E+ F + G +L E L LS+ +RD + + ++ +
Sbjct: 184 S-GLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKI 242
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
+ AK S +I + F ++ L+ +PG + ++ N
Sbjct: 243 GKLSAKMSVPLILFIMFPITILI--AAPGILRIMQN 276
>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 223
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60
+KK+ L + P L+ I+ V AG V + + ++ P+++E +
Sbjct: 71 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 130
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
+ +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA
Sbjct: 131 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 188
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ L EA + +L F + +V +P M
Sbjct: 189 RILGEEASSKLVFPMALIFLI-VIVIVAAPAMM 220
>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 205
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54
++ L +KR +F F NA+ + +++AG V +A+ + + + +R EFR+
Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
++ + + + + M ++ F TV S GG+ + N +I+ + +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
+ ++Q + K I+ ++PF + + T +++VL + G + +
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTIC 186
>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
Length = 247
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%)
Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
E + +I L +S+ ++IS + ++ FS VI + + GGNL EA+ N SRI+
Sbjct: 111 ETKIIINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIIS 170
Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
++ MK +++ L + I+ +P + ++ T+ Y+ + G + + +
Sbjct: 171 EKIEMKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLV 230
Query: 171 FMLIGIMVMRLMIN 184
+++ ++ ++N
Sbjct: 231 LLIVAYLISNKIMN 244
>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 288
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60
+KK+ L + P L+ I+ V AG V + + ++ P+++E +
Sbjct: 136 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
+ +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA
Sbjct: 196 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 253
Query: 120 QALSMEAKAS 129
+ L EA +
Sbjct: 254 RILGEEASSK 263
>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 296
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 6/153 (3%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R + PN LD ++ SV AGL A+A S P+ E R ++ G S
Sbjct: 143 ERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGRSRK 202
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
E+ + + + ++ F I G ++ L ++ +R ++ +A+ QA+ +
Sbjct: 203 EAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMKLPV 262
Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLIN 157
K ++ L FC+ +++ P +NV+ N
Sbjct: 263 K----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291
>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 326
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
+KKR A+ + FP+ALD+++ V AG + ++ + +S + EF V +
Sbjct: 167 VKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKA 226
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + M + + +V+ F T + + G +++EAL S +RD++ M+A+ +A
Sbjct: 227 GKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKA 286
Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157
++ K + +G++ F + L+ P N+ +
Sbjct: 287 NTLPTKLT---LGTMLFTLPPLLIILIGPSIHNIAVT 320
>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 313
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FST++ + G ++ +L LS LR ++ M
Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 265
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302
>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 293
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
++R A+ L P LD + +V AGL ++ A+ V + + P+R E V+ GL+
Sbjct: 140 RRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLKSGLN 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259
Query: 125 EAK 127
K
Sbjct: 260 PVK 262
>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
Length = 285
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 1/177 (0%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+R K D + +D + R+ + G ++ + ++ P+ E + +G+S+
Sbjct: 103 RRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVSMK 162
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++ + + ++ S + V + GG+L + L L+R +RDR +++ + +
Sbjct: 163 AALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGS 222
Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM 182
+A+A ++ LP + P Y+ L+ G A A +IG + V+R++
Sbjct: 223 RATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVL 279
>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
Length = 285
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 3/173 (1%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQHLGLSLSESISR 71
+P AL + +++ G A+ + P+R F R + T + E++
Sbjct: 106 QYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVLE 165
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
+ + +++ + + + + GGNL E L +L + L +R++ + V A++ EA+ +A
Sbjct: 166 VAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAA 225
Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
+ +LPF + + +P +M + + G+ L+ A +L+G V+R M++
Sbjct: 226 FLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMVS 278
>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
Length = 320
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 69/149 (46%)
Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
K P A + ++ +G ++ + + + +PVR+EF R + G+S + ++
Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
++ +P + + + V + G L + LA S ++ DR + +++ + +A+ SA
Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264
Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
++ +P ++ ++ S + L P
Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP 293
>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
Length = 281
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
++K + + ++D P +D++ +V+ G+ + A VA+ + + R++
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + +
Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
++ AK S +I + F + L+ +PG M VL
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277
>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 307
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
+++IK++TA + P+ LD++ SV AGL A++ +V P+ E +
Sbjct: 151 RNIIKRKTAIY-HQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREISM 209
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKV 119
G+ E++ R+ E+ F I+ +LG ++ + + +R ++N++ +
Sbjct: 210 GIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQA 269
Query: 120 QALSME 125
Q LS++
Sbjct: 270 QKLSVK 275
>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 291
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 3/175 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR K D +P+A+D I VRAGL + +A+A + + + +R F R E
Sbjct: 105 RKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYRATGRF 164
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
+ + R+ M + + ++GG +L L LS LR+ +A+++A
Sbjct: 165 HDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAELEARQS 224
Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
+A + + P+ V ++ G + P G ++L A ++ +M
Sbjct: 225 WTINAARLAVAAPWVVLAMLALRG-GSLQAYAT-PTGWLVLAFGAGLCIVAYRLM 277
>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 320
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRS-EFRRVIE 57
++ LIKKR + + FP+ LD+++ AGL ++ A+ + + S PV S E V
Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G++ E++ ++E+ F +S + G ++++ L S RD++ +A
Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278
Query: 118 KVQALSMEAKASAWIIGSLPFCV 140
+ M AK +I L FC+
Sbjct: 279 E----EMAAKMGTKMIFPLIFCI 297
>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
Length = 314
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
++ KR ++ P+ALD++V +GL + A+ + + S E V
Sbjct: 157 MVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKIS 216
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G+ +S++ + +++ L E++ T+++ S++GG+LS+ L + RD++N + +
Sbjct: 217 AGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEI 276
Query: 121 ALSMEAK 127
A + K
Sbjct: 277 AAKIPTK 283
>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
Length = 323
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ L K+R K + P+ALD++V +GL + A+ + + S E V
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+++ +++ +++ L E+ +++S S++GG+L++ L + + RD++ A
Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 278 EEIAAKIPTK 287
>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
Length = 254
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
Query: 16 FPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
F +A+ ++ S++AG + +A + ++ G++SD + R+ + + L +
Sbjct: 77 FKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSD-ISFYLSRISKGLRNNVPLEKL 135
Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
I M + ++ F+ V SV + GGN++E + ++ + ++ +++ L +
Sbjct: 136 IFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVLISAKRL 195
Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
A I+ +PF + + TSPG+ + L ++ G L+ V I + ++N +
Sbjct: 196 EARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCISYYLSEKIVNISI 254
>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 275
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 114 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 167
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FST++ + G ++ +L LS LR ++ M
Sbjct: 168 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 227
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 228 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 264
>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
Length = 326
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
I++R K + FP+ALD+++ V AG + A+ + + S + EF V
Sbjct: 168 IEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKA 227
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + M +Q++S F TV+ + G ++++AL + +RD++ M+A+ A
Sbjct: 228 GKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAA 287
Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
+ K + +G ++P + LV + G MN+
Sbjct: 288 NKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321
>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
MSMB43]
Length = 279
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I+ R K ++DFP+ALD++ V AGL + A+ + +D +R R I LGL
Sbjct: 118 IRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPIVADELGLM 171
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V F ++ + G ++ +L LS LR ++ M
Sbjct: 172 LLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRM 231
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 232 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 268
>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
Length = 301
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 81/182 (44%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
K R A+F + +L ++ ++RAG + A+ + S DP++SE + +
Sbjct: 119 KSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQIDGDI 178
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
++ M + +++ ++ ++GG+L+++L + + R +++ +++ +
Sbjct: 179 VAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIESETSS 238
Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
AS + + + ++ P + DP G +L V F G +++ M +
Sbjct: 239 VIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIYKMADI 298
Query: 186 DV 187
DV
Sbjct: 299 DV 300
>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 308
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
++KR + FP+ALD+++ V AG + ++ + + S + EF V
Sbjct: 153 VEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G ++ M +Q+VS F TV+ + G ++S+AL + +RD++ M+A+ A
Sbjct: 213 GKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAA 272
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
+ K + A ++ ++P L+ +P MN+
Sbjct: 273 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 303
>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 331
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ +D++ SV AGL A+ + + PV +EFR+ ++ LG+ E++ +
Sbjct: 189 LPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLADR 248
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
L E+ F+ + +LG +L+ L + LR ++ +A+ QA+ K
Sbjct: 249 CELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIK-------- 300
Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
+ LV F P VL+ G L+ + AAF
Sbjct: 301 ---MLLPLVLFIFPTLFIVLL----GPALIQILAAF 329
>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 282
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSS--DPVRSEFRRVIETQ 59
L+++R + + P AL ++ V AG PV A + + G+ P+ E+ RV+
Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97
G S S ++ R R +QEVS F+TVI + + GG+
Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGD 226
>gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 324
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +R KF+++ + + I ++++ L V DA+ + +R E +
Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++
Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255
Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
A + + + +A I+ +LPF F P ++L+ P G ++ + + +L
Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 308
>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 310
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I+ R + P+ALD++ SV AGL A+ + ++ + EF +++ H+G
Sbjct: 157 IRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECHMGKP 216
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
E++ M + + ++S F I + LG ++ L S+ +R ++ + K + L+M
Sbjct: 217 RREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKR--RQKTEELAM 274
Query: 125 EA 126
+A
Sbjct: 275 KA 276
>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 252
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57
H + + K +F + I S+ AG + +A+ + + + E + +I
Sbjct: 63 HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113
+ + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182
Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
+ + A ME K I+ +P+ + V +PGY ++L G
Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226
>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
Length = 205
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54
++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+
Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
++ + + + + M ++ F TV S GG+ + N +I+ + +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
+ ++Q + K I+ ++PF + + T +++VL + G + + +
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192
Query: 175 GIMVMRLMINFDV 187
R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205
>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 312
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58
+ HL+ R + + FP+ALD++ V AGL A+ + Q P ++ R++
Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206
Query: 59 Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
+ G ++ + ++EV F T+IS + G +++ +L + +LR R+ +A
Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266
Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+ A AK + ++ L FC+ S +V P + +
Sbjct: 267 EEAA----AKIALKLLFPLIFCIFPSLMVVLMGPAMIQI 301
>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 249
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRR 54
++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+
Sbjct: 57 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
++ + + + + M ++ F TV S GG+ + N +I+ + +
Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
+ ++Q + K I+ ++PF + + T +++VL + G + +
Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTIC 230
>gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 327
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +R KF+++ + + I ++++ L V DA+ + +R E +
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++
Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258
Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
A + + + +A I+ +LPF F P ++L+ P G ++ + + +L
Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 311
>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 314
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ H +K+R P+ALD++V +GL + A+ + + S E V
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N +
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 275 EEIAAKIPTK 284
>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 314
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ H +K+R P+ALD++V +GL + A+ + + S E V
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N +
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 275 EEIAAKIPTK 284
>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 320
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
++ L K+R K FP+ALD++V AGL + A VA + S + SE V
Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ ++ L+++ ++ IS +LG ++E L S R+++ A
Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 278 EEQAAKLAVK 287
>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
Length = 319
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FS ++ + G ++ +L LS LR ++ M
Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308
>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
Length = 319
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FS ++ + G ++ +L LS LR ++ M
Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308
>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 293
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
++R A+ L LD + +V AGL ++ A+ V + + P R E V+ GL+
Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLKSGLN 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ R+ + ++EV+ F + ++G L+++L S R + +A+ QA+
Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQAMEA 259
Query: 125 EAK 127
K
Sbjct: 260 PVK 262
>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
Length = 275
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQ 59
+R L F + L+ + S G A +A I G+ +D V E ++
Sbjct: 91 RRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVH-EIEMIVNGI 149
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
+ G ++ + L +V F+T+ V S+ GGNL +A+ + RI+ ++ M+ ++
Sbjct: 150 YNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEMEMEI 209
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
+ L K I+ +P + +V + G M+++ N P
Sbjct: 210 RTLLTANKNELNIMMLMPLII--MVTLSGMGSMSIVQNTP 247
>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
Length = 319
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FS ++ + G ++ +L LS LR ++ M
Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308
>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 313
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
IK+R + FP++LD+I+ V AGL + AV +V D + E+ +
Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A
Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
AK ++ L FC+ +Y
Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292
>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 313
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
IK+R + FP++LD+I+ V AGL + AV +V D + E+ +
Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A
Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
AK ++ L FC+ +Y
Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292
>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
Length = 322
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
++HL +R FP+ALD++V AGL + A+ + + S + SE V
Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ ++ L+++ ++ IS +LG ++ L S RD++ A
Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 280 EEQAAKLAVK 289
>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 293
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
++R + L P LD + +V AGL ++ A+ V + + P+R E V+ GL+
Sbjct: 140 RRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLKSGLN 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259
Query: 125 EAK 127
K
Sbjct: 260 PVK 262
>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 293
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
L P LD + +V AGL ++ A+ V + + P+R EF V+ GL+ E++ R
Sbjct: 147 LKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALYR 206
Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
M + ++EV+ + ++G LS++L S R + +A+ QA+ K
Sbjct: 207 MDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVK 262
>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
++ +IK R + ++FP+A D+++ V AGL + A+ + + S+ + E
Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G + +S+ + ++E+ F+T+++ + G ++ E+L S LR ++ ++A
Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
+ A + K ++ + C+S ++
Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI 281
>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 321
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
++ L K+R FP+ALD++V AGL + A VA + S + SE V
Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ ++ L+++ ++ IS +LG ++E L S RD++ A
Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 279 EEQAAKLAVK 288
>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 337
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
+ RT + D FP+ALD+++ V AG + + + + SS P + EF V
Sbjct: 176 VAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKA 235
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL + + +V+ F TV+ Q G +++EAL + +RD++ M+A+ A
Sbjct: 236 GLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAA 295
Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157
+ K + +G++ F V L+ P +++ N
Sbjct: 296 NKIPTKMT---LGTMMFTVPPLLIILVGPSVHDMMEN 329
>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 313
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FS ++ + G ++ +L LS LR ++ M
Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 265
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302
>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 299
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRM 72
++ P AL I++ S+ +G +++A+ +V + V FR+VI +H +S E+I+ +
Sbjct: 85 NNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEHQKISFEEAITVV 144
Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
+ + + ++ + GG+LS++L L++ L D K+ K ++ +++ A +I
Sbjct: 145 STLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFI 204
Query: 133 I--GSLP 137
I G +P
Sbjct: 205 ILCGVIP 211
>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 323
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+ L K+R K + P+ALD++V +GL + A+ + + S + E V
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G+++ +++ + + L E+ +++S S++GG+L++ L + + RD++ A
Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277
Query: 118 KVQALSMEAK 127
+ A + K
Sbjct: 278 EEIAAKIPTK 287
>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 304
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R+ + P+A+D++ SV AGL AV + + P+ E RV+ LG S S
Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ + + E+ F + LG +++ L SR +R ++ A+ +A + K
Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275
Query: 128 ASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
+ +I FC+ ++ P +N++
Sbjct: 276 ITVPLI----FCILPCLFVVVLGPAVLNIM 301
>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 290
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I+K ++ DFPNA+ I V G+ + +A + S +P+ + R V++ + G+S
Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200
Query: 65 LSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRK 113
+++ R +E+ FST I+ ++S G +L++ L + +L + K
Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESD-GTHLADTLIKQADLLLNEK 250
>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 309
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKR P+ALD++ SV AGL A+ + + D + EF++V+ LG +
Sbjct: 156 IKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIRLGRT 215
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
E++ + + +V F+ + QLG ++S+ L
Sbjct: 216 RREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKIL 253
>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
Length = 197
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/193 (16%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59
++ + K+ +F F +++ I+ +++AG +A+ +SE R + E +
Sbjct: 5 LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64
Query: 60 -----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
+ + + + +S + ++V F TV + + GG+ + + +++ ++
Sbjct: 65 MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
+ ++Q + K I+ +PF + + T ++ VL +P G +++ + A
Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184
Query: 175 GIMVMRLMINFDV 187
+ + MI +V
Sbjct: 185 AYIWGKKMIKIEV 197
>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 287
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRS---EFRRVI 56
L+ +R + F AL + S+ AG V +A + DP EFR V
Sbjct: 98 LLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVK 157
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
G L +++ + + L +++ FS V +V + GG+L E + S+ + ++ +K
Sbjct: 158 YRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVK 217
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
++ L + + A I+ ++PF + +P YM L G++LL +
Sbjct: 218 QEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYGGG-GYVLLTIG 268
>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 306
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K +R + P+ LD+++ SV AGL A+ + + + E + ++ +
Sbjct: 149 KRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIRM 208
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + E++ M + ++S F + + QLG N+++ L + +R R+ M+A+ +A
Sbjct: 209 GKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEA 268
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
+ K + LV+F P VL+
Sbjct: 269 MRAPIK-----------MLFPLVFFIFPALFVVLL 292
>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 296
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL
Sbjct: 135 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 188
Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L E S + L ++V FS ++ + G ++ +L LS LR ++ M
Sbjct: 189 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 248
Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+A+ +A AK + ++ L FC+ + L P ++++
Sbjct: 249 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 285
>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
Length = 326
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62
+KR + D FP++LD+++ + AG + ++ + + S + EF V G
Sbjct: 169 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIKAG 228
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
+ M +Q++S F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A
Sbjct: 229 RDKPSVLGEMAERCGVQDISSFVTVL-VQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKA 287
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
+ K + A ++ ++P + LV + G M++L
Sbjct: 288 NKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322
>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 322
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
+R + + FP+ALD+++ V AGL + D V + S V + +V+ G
Sbjct: 164 RRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A
Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHR 283
Query: 124 MEAKASAWIIGS-LPFCVSTLV 144
+ S ++ LP + L+
Sbjct: 284 LPVLLSVPLVACMLPVMIGVLM 305
>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
Length = 313
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
IK R + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ +
Sbjct: 153 IKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GLS +++ + +VS ++ + G +++ +L S +LR ++ M A+ +A
Sbjct: 213 GLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
AK I+ L FC+ +Y
Sbjct: 273 ----AKIGTKILFPLIFCIFPSIY 292
>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
Length = 324
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+++R + + FP+ALD+++ V AG + ++ + + S + EF +
Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRA 224
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S ++ M +Q+VS F TV++ + G ++++AL + +RD++ M+A+ +A
Sbjct: 225 GKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKA 284
Query: 122 LSMEAK 127
+ K
Sbjct: 285 NKLPTK 290
>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 293
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
P LD + SV AGL ++ A+ V + + P+R EF V+ GLS ++++ RM
Sbjct: 151 PVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDLKSGLSRADALRRMDDR 210
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
+ ++EV+ F + ++G L+ L S R + +A+ QA+ K
Sbjct: 211 LRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEKQAMEAPVK 262
>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 318
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
M+ L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+
Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A
Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
+ QA + K + L++F P + VL+
Sbjct: 270 EEQAAKIALK-----------LLFPLMFFIFPTLLAVLVG 298
>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 284
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H K R K +P+A+D + ++RAGL + +A+ + + +R F R
Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
S++R+ Y+ + + ++GG +L L LS LR+ +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
QA +A + P+ V L+ T P N+ N G +L+ A +I +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270
>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 326
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
IK R ++ P+ALD++V V AG+ + A + + + +++PV + E VI
Sbjct: 167 IKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRA 226
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S +E++ + + L++V+ T+I G ++S L S +R + +A+ A
Sbjct: 227 GKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIA 286
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
M K ++ L FC+ ++ T P ++ ++
Sbjct: 287 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 318
>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 284
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H K R K +P+A+D + ++RAGL + +A+ + + +R F R
Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
S++R+ Y+ + + ++GG +L L LS LR+ +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
QA +A + P+ V L+ T P N+ N G +L+ A +I +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270
>gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
Length = 296
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
D P+ ++ ++ AG S A+A + F++ G S+SE ++ M
Sbjct: 122 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMAH 181
Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ V F T + + + G L ++++ ++ K + + +A+ S ++
Sbjct: 182 TLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVVS 241
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
SLP + +++ S + I P G + LG+AA I +M++R ++
Sbjct: 242 SLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 290
>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 324
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
++KR + FP+ALD+++ V AG + ++ + + S + EF +
Sbjct: 165 MEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKA 224
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S+ ++ M Q+VS F TV++ G ++S+AL + +RD++ M+A+ A
Sbjct: 225 GKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAA 284
Query: 122 LSMEAK 127
+ K
Sbjct: 285 NKLPTK 290
>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 293
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
++R A+ L LD + +V AGL ++ A+ V + + P+R E V+ GL+
Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLKSGLN 199
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+E++ R+ + ++EV+ F + ++G L+++L S R + +A+ +A+
Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKKAMEA 259
Query: 125 EAK 127
K
Sbjct: 260 PVK 262
>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 227
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV------IVGQSSDPVRSEFRRV 55
K LI + K + +F A+ II + AG + +++ ++ + + EF +
Sbjct: 36 KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
+ ++ +S+ + + +++ F+ V+ + + GG L +++ ++ D+ +
Sbjct: 96 NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
K ++ ++ + ++ P + + +SPG+ N++ G + + L
Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215
Query: 176 IMVMRLMINFDV 187
I + + ++N +V
Sbjct: 216 IYISKGLLNIEV 227
>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 325
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62
+KR + D FP++LD+++ + AG + ++ + + +S P +E ++ Q G
Sbjct: 167 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAG 226
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
++ M +Q+++ F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A
Sbjct: 227 RDKPSVLNEMAERCGVQDITSFVTVM-VQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKA 285
Query: 122 LSMEAKAS 129
+ K +
Sbjct: 286 NKLPTKMT 293
>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
Length = 643
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + L P+ALD++ SV AGL A+ IV + + + EF V+ LG S
Sbjct: 487 ITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMKLGKS 546
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+++ M + L E+ + I ++G ++ L+ S +R R+ +A+
Sbjct: 547 RRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAE 600
>gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
12885]
gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
12885]
Length = 274
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 11 KFLDDFPNALD----IIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62
K +D AL+ ++ ++AG P+ +A +V +P ++EF + G
Sbjct: 87 KAVDAAAEALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAG 143
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
LSL E++ + L+ + V + + GG+ + + LR+++ A V A
Sbjct: 144 LSLDEALGQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAAR 203
Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
+ EA+ SA ++ LP V+ P ++ L NDP G L A L GI ++R +
Sbjct: 204 TAEARLSARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263
Query: 183 IN 184
Sbjct: 264 AG 265
>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 322
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
+R + FP+ALD+++ V AGL + D V + S V + +V+ G
Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A
Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKA 281
>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 326
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
I++R + FP+ALD+++ V AG + A+ + + S + EF V +
Sbjct: 168 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKA 227
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + M +Q+VS F TV+ + G +++EAL + +RD++ M+A+ A
Sbjct: 228 GKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAA 287
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
+ K + A + ++P + LV ++ G N+
Sbjct: 288 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 321
>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Aromatoleum aromaticum EbN1]
Length = 315
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
+ LI R + + FP+ALD++ V AGL V A VA + S+ + E V
Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL + ++ + ++EV F ++ + G +++ +L S +LR R+ +A
Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
+ +A+A I L F L++F P M VL+
Sbjct: 267 E--------EAAAKIALKLLF---PLIFFIFPSLMLVLLG 295
>gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM
15829]
Length = 314
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
D P+ ++ ++ AG S A+A + F++ G S+SE ++ M
Sbjct: 139 HDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMA 198
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
+ V F T + + + G L ++++ ++ K + + +A+ S ++
Sbjct: 199 HTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVV 258
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
SLP + +++ S + I P G + LG+AA I +M++R ++
Sbjct: 259 SSLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 308
>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 284
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61
IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I
Sbjct: 125 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 184
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A
Sbjct: 185 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 244
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
M K ++ L FC+ ++ T P ++ ++
Sbjct: 245 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 276
>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 323
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 82/159 (51%), Gaps = 9/159 (5%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIE 57
+ H + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++
Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G S +++S + +++V F++++ + G +L ++L LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276
Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+ QA AK + ++ L F + S L+ P ++ +
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 319
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + P+ALD++ V AGL A+A + + + F RVI+ LG +
Sbjct: 162 ISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQLGKT 221
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+++ M + + E++ F + QLG ++++ L S +R R+ A+ +A
Sbjct: 222 RRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEA 278
>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 299
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQH 60
L + + K ++ P AL IIV ++ +G +++A+ +V + V F RV IE Q
Sbjct: 74 LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L S ++++ + + + + ++ + GGNLSE L L++ L D + K ++
Sbjct: 134 L--SFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLM 191
Query: 121 ALSMEAKASAWII 133
+++ + A +I+
Sbjct: 192 SVTANSLAMGFIM 204
>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
Length = 328
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRV 55
K+ + KR + +D FP++LD+++ V AG + ++ + + +S P +E ++
Sbjct: 162 KYWVTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQI 221
Query: 56 IETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRK 113
+ Q G ++ M +Q++S F TV+ VQSQ G ++++AL + +RD++
Sbjct: 222 VANQIKAGRDKPSVLNEMAERCGVQDISSFVTVL-VQSQTFGTSIADALRVYAGEMRDKR 280
Query: 114 NMKAKVQALSMEAK 127
M+A+ +A + K
Sbjct: 281 VMRAEEKANKLPTK 294
>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 326
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGL 63
+R + ++ FP++LD+++ V AG + ++ + + S P + E++ V G
Sbjct: 169 ERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMKAGK 228
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
++ + M + ++S F TV+ Q G +++EAL S +RD++ M+A+ +A +
Sbjct: 229 DKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEKANT 288
Query: 124 MEAK 127
+ K
Sbjct: 289 LPTK 292
>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 323
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61
IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I
Sbjct: 164 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 223
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A
Sbjct: 224 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 283
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
M K ++ L FC+ ++ T P ++ ++
Sbjct: 284 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 315
>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
Length = 303
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R P+A+D++V SV AGL A+ +V + + + EF R + +G+
Sbjct: 151 IAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMRMGIP 210
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+++ + R + + +++ F + QLG ++S+ L + +R R+ +A+ +
Sbjct: 211 RRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQ----EL 266
Query: 125 EAKASAWIIGSLPFCVSTLVY 145
KA +I + F + +Y
Sbjct: 267 AHKAPIKMIFPMVFLIFPALY 287
>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 287
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
+ L KKR + P LD + S+ AGL ++ A++ V + + P+R EF +VI
Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G+S +++ M + + EV+ + ++ + G +L + L S R + +A+
Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250
Query: 120 QALSMEAK 127
+AL K
Sbjct: 251 KALEAPVK 258
>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 300
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL------ 61
R ++ D FP+ LD++V SV AGL + AV + +D + + + T HL
Sbjct: 148 REREYADGFPDLLDLLVASVEAGLSLDAAVTRV----TDELERRYPNL--TVHLRFLVLE 201
Query: 62 ---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
G + ++ S + +++ +T++ ++G +L + L S+ +R ++ ++A+
Sbjct: 202 LRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAE 261
Query: 119 VQALSMEAKASAWII 133
+AL++ AK + +I
Sbjct: 262 EKALALSAKLTVPLI 276
>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 313
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
+K I R + L P LDII V AGL + A+A V + VR EF+RV+
Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G + +ES+ M + V+ F + ++G NL L + R + ++A
Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRA-- 273
Query: 120 QALSMEA 126
+ L+MEA
Sbjct: 274 EKLAMEA 280
>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
SSC/2]
Length = 252
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 13/168 (7%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57
H + K +F + I S+ AG + +A+ + + + E + +I
Sbjct: 63 HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113
+ + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182
Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
+ + A ME K I+ +P+ + V +PGY ++L G
Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226
>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 320
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
++ L +R + FP+ALD++V AGL + A VA + S + SE V
Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ ++ L+++ ++ IS +LG ++E L S RD++ A
Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 278 EEQAAKLAVK 287
>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
Length = 323
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP-VRSEFRRVIETQH 60
I++R FP+ALD+++ V AG + ++ V VG Q+S P + EF V
Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQSI-VRVGKELQASYPELAEEFEIVAHEMK 226
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+
Sbjct: 227 AGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286
Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
A + K + +G ++P ++ L+ + G N+
Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321
>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
Length = 308
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 84/174 (48%), Gaps = 1/174 (0%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
+ P A + S+ +G ++ + + + +PV +EF RV G+S ++++ ++
Sbjct: 136 EAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISATDALDDLL 195
Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
+ +S + + V + G L++ L+ S ++ +R +K ++ + +A+ SA ++
Sbjct: 196 VRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMV 255
Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
++P + ++ S + L P G + + A + ++V+R ++ ++
Sbjct: 256 AAMPTGMCAVLALLSADFRRGLAT-PAGAGAVVLGLALNAVALVVIRRIMRVEL 308
>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 303
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + +R + ++FP+A D+++ V AG+ + A +G+ +D +R + + E H
Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTDEIRIKSEALAEELH 192
Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
G + +S+ + + E+ F+ +++ + G ++ E+L S LR ++
Sbjct: 193 WTNLEMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252
Query: 114 NMKAKVQALSMEAK 127
M+A+ A + K
Sbjct: 253 QMRAEELAAKIPTK 266
>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 301
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IKKR L P+ALD++ SV AGL A+ + + + + EFRR + LG
Sbjct: 149 IKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIRLGTQ 208
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
E+ M +++++ F + + QLG ++ + L
Sbjct: 209 RHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKML 246
>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 304
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 8/181 (4%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56
L+++R + F AL + S+ AG V +A + ++ S + EF ++
Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
G + I L++++ F+ V + GGNL E + S ++ ++ +
Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIG 175
++ + + K + I+ + P + ++ F+SP YM L R M +G+ F+ +
Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYEGAGRLIMTIGLTVLFLCLW 294
Query: 176 I 176
I
Sbjct: 295 I 295
>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 306
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P +DI+ SV AGL A+ + ++ P+ EFR LG E+++R+
Sbjct: 163 LPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSER 222
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++EV F+ I +LG +L L + S+++R + +A + K
Sbjct: 223 TEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVK 274
>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 314
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57
+K+LI +R + + FP+ALD++ V AGL + A+A + +G S + E + V
Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G S +++ + + +V ++ + G +++++L S LR ++ +A
Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267
Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
+ QA AK + ++ L F + S LV P ++ +
Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQI 302
>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
Length = 308
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/192 (16%), Positives = 89/192 (46%), Gaps = 6/192 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55
+ L ++R + +F + + ++ + AG + +AVA ++ + + EF +
Sbjct: 117 EDLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEM 176
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
L ++ + L++V+ F+ V + + GG+L E +++ + ++RD+ +
Sbjct: 177 ARGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQV 236
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
+ ++ ++ I+ +P + + TSPG+ +++ G +++ A I
Sbjct: 237 QEEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGIS 296
Query: 176 IMVMRLMINFDV 187
+++ R ++ ++
Sbjct: 297 LLLARRILQVEI 308
>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 284
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
++R + + +P A+D + +VRAG+ + DA+A + + +P+R F + +
Sbjct: 98 RRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTGRF 157
Query: 66 SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
E + R+ + P+ + I+ + GG L L NLS LRD +++++A
Sbjct: 158 GECLDRLKERLADPVGDRVVEGLRIAREVG-GGELGRLLRNLSSYLRDDARTRSELEARQ 216
Query: 124 ME-------AKASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155
A AS W ++ + F + + SPG + VL
Sbjct: 217 AWTVNGARLAVASPWLVLLFMSFQSEVIHRYASPGGVLVL 256
>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 309
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R + L+ P+ALD++ + AGL +A+ I + ++ + EF RV+ +G+
Sbjct: 155 IGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMSMGVP 214
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
++++ M + +++ F + I LG ++ L
Sbjct: 215 RRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVL 252
>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 302
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57
HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V
Sbjct: 144 HLKVKARQLEIFHPLPDILDLVTLCVEAGLSI-DAALIRTTETPQFRDNPLAIEIRQVTM 202
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A
Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
+ EA A I P L+ F P + V++
Sbjct: 263 E------EAAAKTTIKLIFP-----LIMFIFPALLVVILG 291
>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 296
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
+KKR P +LD++ SV AGL + A+A +V + P+R E + V++ +G
Sbjct: 141 VKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQLKMGK 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+ E + M+ + L ++ F T + ++G +L + L S +R + +A+
Sbjct: 201 TREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255
>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 300
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S E+ + + R
Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMSRREAFTELRRR 213
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267
>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
Length = 291
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
L ++R + L +FP LD+ V AGL + A+ D P+R E R + G
Sbjct: 137 LARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADMRAG 196
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ +++ + L V T ++ QLG +L L + S R + ++A+ AL
Sbjct: 197 VPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEKLAL 256
Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145
K ++ + FC+ +
Sbjct: 257 EAPVK----MLFPMVFCIFPCTF 275
>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 324
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
+ +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++
Sbjct: 161 VAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
AK + ++ L F + S L+ P ++ +
Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 307
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
IK+R + + P+A+D++ SV AGL A+ +V + + + EF R++ +G S
Sbjct: 154 IKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIRMGQS 213
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
E++ + + +++ F + + QLG ++++ L S+ +R R+ +A+ QA
Sbjct: 214 RREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQA--- 270
Query: 125 EAKASAWIIGSLPFCVSTLVY 145
KA +I + F + +Y
Sbjct: 271 -HKAPVKMIFPMVFLIFPALY 290
>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 245
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/196 (16%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51
+ +KKR + F + + ++ AG V +A G++ +R E
Sbjct: 54 ESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAF----GEALRELRQLYEEDAMIVRE 109
Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
FR ++ + SL + ++ + ++++ F+ + S + GGNL + N + +
Sbjct: 110 FRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQ 169
Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
++ + ++ + I+ +P + V SPG+++V+ ++P G +++ +
Sbjct: 170 KEETRREINTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLV 229
Query: 172 MLIGIMVMRLMINFDV 187
+ + R +++ +V
Sbjct: 230 YFLAWLWGRKIVSIEV 245
>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
Length = 302
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57
HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V
Sbjct: 144 HLKVKARQLEIFHTLPDILDLVTLCVEAGLSM-DAALIRTTETPQFRDNPLAIEIRQVTM 202
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A
Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262
Query: 118 KVQA 121
+ A
Sbjct: 263 EEAA 266
>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 303
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 15/162 (9%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56
+ H +R K P+ LD+I V AGL + DA + ++ +DP+ E +
Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSM-DAALIKTTETPQFANDPLAKEIKIAT 201
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
G ES+ M + +V F T++S + G +LS+AL+ + LR ++
Sbjct: 202 METRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQM 261
Query: 117 AKVQALSMEAKASAWIIGSLPFCV----STLVYFTSPGYMNV 154
A+ EA A I P + + LV P Y+ +
Sbjct: 262 AE------EAAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297
>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 309
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + +KR KF F A+ I ++ + +A+ ++ + +P++ E ++++
Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180
Query: 61 LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
G+SL E++ + PL E S V + Q+ N ++ +S +++R K
Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFA--GQMKANTADICQKMSAKIKERIRQNNK 238
Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
+ + K++ +I ++ + Y + P Y +LL + ++++ + V
Sbjct: 239 ISSFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFV 298
Query: 179 MR 180
R
Sbjct: 299 FR 300
>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 322
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
+R + FPN LD+I+ V AGL + D V+ + ++ V R G
Sbjct: 164 RRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGA 223
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+ E++ RM + E+ F+T++ +LG ++ L + +R+++ M+A+ +A
Sbjct: 224 TREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKA 281
>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
Length = 245
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVI 56
+L K+R + F + ++ + AG + + + + + + + + EFR +
Sbjct: 55 NLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILS 114
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
+ + E R +++V F+ V+S + GG L E + + I+RD+ +K
Sbjct: 115 DGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQVK 174
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----MLLGVAAAF 171
++ + I+ +PF + + TSPG+ +V+ G L A A
Sbjct: 175 EEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGAL 234
Query: 172 MLIG 175
+L G
Sbjct: 235 VLAG 238
>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 324
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
+ +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++
Sbjct: 161 VSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S ++++ + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
AK + ++ L F + S L+ P ++ +
Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311
>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
Length = 254
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P A + S+ +GL ++ A+ + G+S +PVR+EF G+S +++ +V
Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
+ + + V + G +L+ L+ + ++ +R + ++ + + + SA ++
Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203
Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
+P + + S + + P G L VA A + +V+R ++ D
Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253
>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
Length = 327
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
I++R + FP+ALD+++ V AG + A+ + + S + EF V
Sbjct: 169 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMKA 228
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A
Sbjct: 229 GKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
+ K + A + ++P + LV ++ G N+
Sbjct: 289 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 322
>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
Length = 295
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262
>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 296
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R
Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 209
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 210 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 263
>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 312
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ H I R + + FP+ALD+I+ V +GL + DA VG+ + +
Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGL-DAALARVGEEMHVRSPTLGEELHLIN 205
Query: 61 LGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
L L S R +R + L +EV ++ + G N+S++L R+ D K
Sbjct: 206 LELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSL----RVHADSLRTK 261
Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
++ A AK + ++ L F + S L+ P ++N+
Sbjct: 262 RRLLAEEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301
>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
Length = 319
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGL 63
I +R L +FP LD++V +RAGL + A+ I + +R EF +V+ G
Sbjct: 156 INRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREIRAGK 215
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
S E++ + M L+ +S F ++ + GG + L + R+ + A++ A
Sbjct: 216 SRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEIAA 273
>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 295
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262
>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 295
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262
>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
Length = 314
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
I++R + FP++LD+I+ V AGL + AV +V + ++ P + E+ +
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTLELRA 212
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
AK I+ L FC+ S V P + V+
Sbjct: 273 ----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304
>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
Length = 165
Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 61/134 (45%)
Query: 50 SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
+EF + +LG + + R E FF++VI + + GG LS+ + + + +
Sbjct: 28 NEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGI 87
Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
+ +K + ++ + + + ++ +P + +Y+ P + L + G ++
Sbjct: 88 TESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIV 147
Query: 170 AFMLIGIMVMRLMI 183
++GI ++R MI
Sbjct: 148 ISEILGIFIIRNMI 161
>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
Length = 224
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 6/184 (3%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
KKR + F L I+ + AG + +A+ + + + + V E + + SL
Sbjct: 37 KKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKRSL 96
Query: 66 S------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
S E++S+ + ++ FS + V + GG+L + + S I+RD+ + ++
Sbjct: 97 SMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITEEI 156
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
L+ + I+ +PF + + +SP + +L + G ++ L+ I +
Sbjct: 157 ITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIYLS 216
Query: 180 RLMI 183
+ +I
Sbjct: 217 QKII 220
>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 306
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
+R + ALD++ V AG DA V V +S+D P+ EF RV+ +G S
Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGF-DAALVQVARSTDGPISGEFARVLSEVQIGKSR 209
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
SE+ + + + L +V F + I +LG ++ L + +R + +A+ +A +
Sbjct: 210 SEAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVT 269
Query: 126 AKASAWIIGSLPFCV--STLVYFTSPGYMNVLINDPRGHML 164
K I+ L C+ + V PG + ++ G++L
Sbjct: 270 VK----ILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306
>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
Length = 318
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ I+ R L FP+ALD++V V AGL + D VGQ + E + +
Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSL-DVAITRVGQELQLMHRELSEELRALY 212
Query: 61 LGLSLSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
L L S + +R + L+EV F ++ + G ++ +AL + LR R++++
Sbjct: 213 LELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQ 272
Query: 117 AKVQA 121
A A
Sbjct: 273 ATEMA 277
>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 323
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
+K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V
Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G + M + + +VS F T + + G +++EAL S +RD++ M+A
Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281
Query: 118 KVQALSMEAK 127
+ +A ++ K
Sbjct: 282 EEKANTLPTK 291
>gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
Length = 327
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92
V D+V + ++ E + G S++ES + + P QE+ FF ++ V
Sbjct: 171 VVDSVEEVKPLVHSSIKEELNKATIKLQQGKSVNESFMSLDKKYPYQELKFFHEMLDVAD 230
Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEA----KASAWIIGSLPFCVSTLVYFTS 148
+ GG EAL +++ +RK + ++ A +++ + SA + ++PF V
Sbjct: 231 KNGGRNIEALESIAVDFEERKVKQMRLYAETIQGTKAFRNSALTVLAIPFIFKFFV---- 286
Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
P +L++ P G ++ A +L + ++ + ++D
Sbjct: 287 PDAYGMLMSTPLGSIVFVSIACVVLYCYIRIQKLADWD 324
>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
Length = 300
Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R
Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 213
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267
>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
Length = 334
Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+++ +R + P+ALD+++ + G+P+ A+ + + S + EF +I
Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFE-IIR 200
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
S+++++ + + + +V+ S +IS +LG N+S AL + + +R + +A
Sbjct: 201 RHADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYM---NVLINDPR 160
+ + +K S ++ + FC++ +Y F P + N LI + R
Sbjct: 261 EENS----SKTSIKLLFPIIFCMAPPIYILFFGPAVLELRNFLIREHR 304
>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 324
Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+K R K +DFP+ALD++ V AGL + A+ + + SS+ V SE ++
Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLLEMRS 220
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + ++ + ++++ F ++ + G ++SE+L R+L D + +++A
Sbjct: 221 GFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMRA 276
Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
AK + ++ L FC+ P M VL+ H+
Sbjct: 277 EERAAKIALKLLFPLIFCI-------FPALMLVLLGPAMIHV 311
>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 320
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62
+KR L FP+ALD++V V AG+ + A++ + +S + E G
Sbjct: 164 QKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAG 223
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ +++ + LQ++ +T++ + G ++S+AL S +R + +A+ +A
Sbjct: 224 MPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAA 283
Query: 123 SMEAK 127
+ K
Sbjct: 284 KIPVK 288
>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
Length = 291
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R
Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 204
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 205 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 258
>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 315
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIETQHL 61
IK R + + FP++LD+I+ V AGL + A+ +V +++ PV + E+ +
Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRA 214
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GLS +++ + + +VS ++ + G +++++L S +LR +++M A+ +A
Sbjct: 215 GLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274
Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
AK ++ L FC+ +Y
Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294
>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
HTCC2601]
gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
Length = 323
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+++R + + FP+ALD+++ V AG + ++ + + S + EF +
Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKA 224
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + ++ M + +VS F TV++ S G ++++AL + +RD++ M+A+ +A
Sbjct: 225 GKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKA 284
Query: 122 LSMEAK 127
+ K
Sbjct: 285 NKLPTK 290
>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 325
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+++R ++ FP+ LD+++ V AG + A+ + + S + EF V
Sbjct: 169 VEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEMKA 228
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + +Q+VS F TV+ + G ++++AL S +RD++ M+A+ A
Sbjct: 229 GKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEEAA 288
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYM 152
+ K + A ++ ++P + LV ++ G M
Sbjct: 289 NKLPTKMTLATMMLTVPPLLVILVGPSAKGIM 320
>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + + L +L++ +R A+ +A KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262
>gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
Length = 90
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 53/90 (58%)
Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++E +S ++R+R ++ K+ AL+ + K WI+ S+P + ++ P M +++
Sbjct: 1 MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60
Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
G++L+ V A ++GI+++R ++N D+
Sbjct: 61 HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90
>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
Length = 246
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 43 QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
Q ++ E + +I + + + L +V F+ V +V + GGNL + +
Sbjct: 102 QGRSYIQGEIKMIIAGLEMNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMM 161
Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
+ + + +R ++ ++ + + I+ ++PF + + +PGYMN L +
Sbjct: 162 KKMVQTIEERLEVEDEIDTMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGN---- 217
Query: 163 MLLGVAAAFMLIGIMVMRLMI 183
+ G+AA M + ++V+ LM+
Sbjct: 218 -VFGIAA--MSVCLIVIFLMV 235
>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 326
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 4/143 (2%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72
FP+ALD+++ V AG + ++ + + S + EF V G + + M
Sbjct: 179 FPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDM 238
Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131
+ +VS F TV+ SQ G +++EAL + +RD++ M+A+ A + K + A
Sbjct: 239 GTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298
Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154
++ ++P + LV ++ G M++
Sbjct: 299 MMLTVPPLLIILVGPSAKGIMDL 321
>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Cupriavidus metallidurans CH34]
Length = 323
Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
+ R ++FP+ +D++ V AGL + A+ + + + PV + E + ++
Sbjct: 161 VTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280
Query: 122 LSMEAK 127
+ K
Sbjct: 281 AKIALK 286
>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 323
Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60
I++R FP+ALD+++ V AG + A+ V VG+ S + EF V
Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQAI-VRVGKELRASYPELAEEFEIVAYEMK 226
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+
Sbjct: 227 AGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286
Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
A + K + +G ++P ++ L+ + G N+
Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321
>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
Length = 281
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
+IK + + + D P +D++ +V+ G+ + A V++ + + + R+I
Sbjct: 126 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 185
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + +
Sbjct: 186 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 244
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++ AK S +I + F + L+ +PG M VL N
Sbjct: 245 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 279
>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 324
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
+K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++
Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + ++ + ++++ F ++ + G ++SE+L R+L D + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275
Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
A AK + ++ L FC+ + +V P ++V
Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311
>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
Length = 318
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
I R ++DFP+ALD++ + AGL + + + + S V E ++
Sbjct: 157 IASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLLEMRS 216
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G S ++ + +++ FS ++ + G ++ +L LS LR ++ M+A+ +A
Sbjct: 217 GFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERA 276
Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
AK + ++ L FC+ + L P ++++
Sbjct: 277 ----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 307
>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
Length = 290
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
+IK + + + D P +D++ +V+ G+ + A V++ + + + R+I
Sbjct: 135 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 194
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + +
Sbjct: 195 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 253
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++ AK S +I + F + L+ +PG M VL N
Sbjct: 254 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 288
>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 326
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
+K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G + M + + +VS F T + + G +++EAL S +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284
Query: 118 KVQALSMEAK 127
+ +A ++ K
Sbjct: 285 EEKANTLPTK 294
>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 309
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 50/98 (51%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R + L+ P+ALD++ + AGL A+ I + ++ + EF RV+ +G+
Sbjct: 155 IRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMSMGVP 214
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
++++ M + +++ F + + LG ++ L
Sbjct: 215 RRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVL 252
>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
Length = 296
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLG 62
I+KR L +F +D+ + +GL A I+ + + E +++ LG
Sbjct: 139 IQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNEVKLG 198
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
S E++ R+ +QE+ F +I +LG +L + L N S LR R+ KA+
Sbjct: 199 YSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254
>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 326
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
+K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G + M + + +VS F T + + G +++EAL S +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284
Query: 118 KVQALSMEAK 127
+ +A ++ K
Sbjct: 285 EEKANTLPTK 294
>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 305
Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+ +R + FP+ALD+++ V AG + + + + S + EF V
Sbjct: 150 VAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEMKA 209
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A
Sbjct: 210 GKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEEAA 269
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
+ K + A ++ ++P L+ +P MN+
Sbjct: 270 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 300
>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
Length = 283
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVI 56
K +I R + +D P +DI+ V++G+ + + + + ++++ + + R ++
Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYL-AENTETINPDISVLLARTIM 182
Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
+ + G+S E++ + +P QE+ ++ + + G ++ L +LSR +R+ + +
Sbjct: 183 KMEVSGMS--EALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLA 240
Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
+ S+ AK S +I + F + LV PG + ++
Sbjct: 241 IDEKISSLAAKMSLPMIICIMFPI--LVLVAGPGVIRIV 277
>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 296
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 4 LIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
L++ A+ DD P+ LD++ V AGL A+ + + + P E R +
Sbjct: 134 LLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQM 193
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
+G+ E+ ++ R ++VS F + + +LG + + L ++ +R A+
Sbjct: 194 DMGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARR 253
Query: 120 QALSMEAKAS 129
+A KA+
Sbjct: 254 KAAKAVPKAT 263
>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
denitrificans OCh 114]
gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter denitrificans OCh 114]
Length = 355
Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+ R + FP++LD+++ V AG + + + + S + EF V
Sbjct: 195 VDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 254
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A
Sbjct: 255 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAA 314
Query: 122 LSMEAKAS 129
+ K +
Sbjct: 315 NKLPTKMT 322
>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 322
Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
+++L +R + FP+ALD++V AGL + A+ + + S + SE V
Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ ++ L ++ ++ IS +LG ++ L S RD++ +A
Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 280 EEQAAKLAVK 289
>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 287
Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
+ L + R + + P LD + ++ AGL +S A+A V + D P++ EF +VI
Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---ANLSRILR----DR 112
G+S +++ M + + E++ + ++ + G +L L A+ R+ R ++
Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250
Query: 113 KNMKAKVQ 120
K M+A ++
Sbjct: 251 KAMEAPIK 258
>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 307
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R + P+ +D++ SV AGL A+ + + + EF ++++ +G E
Sbjct: 157 RKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIKIGRPRLE 216
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
++ + R + + ++S F+ + + QLG + + N+ R+ D+ MK + A M K
Sbjct: 217 ALRDLSRRLDVDDLSAFAGAVILADQLGIS----IGNILRVQSDQIRMKRRQAAEEMAMK 272
Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
A ++ +P +V F P VL+ G ++ ++ AF
Sbjct: 273 APVKML--IP-----MVLFIFPAIFVVLL----GPAVIQISKAF 305
>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 295
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
KKR L P LD+I +AGL ++ A+A V + + EF R++ G+S
Sbjct: 143 KKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREMRTGVS 202
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++++ M + + + + ++ LG +L++ L+ +S R + A + L+M
Sbjct: 203 RMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHA--EKLAM 260
Query: 125 EA 126
EA
Sbjct: 261 EA 262
>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
2661]
gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 299
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++
Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ + + + ++ + GG+LS++L L++ L D K K ++ +++ A
Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIG 202
Query: 131 WII--GSLP 137
+II G +P
Sbjct: 203 FIILCGVIP 211
>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 323
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
D FP++LD+++ V AG + ++ + + S + E++ V + G + ++
Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231
Query: 71 RMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
M +Q++S F TV+ VQSQ G ++ +AL + +RD++ M+A+ +A + K +
Sbjct: 232 EMGDRCGVQDISSFVTVL-VQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMT 290
Query: 130 AWIIG 134
+G
Sbjct: 291 LCTMG 295
>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 320
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
+++R ++ + FP+ +D+++ AG+ + + + + + P S+ +++ +
Sbjct: 167 VRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 226
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A
Sbjct: 227 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEKA 286
Query: 122 LSMEAKASAWII 133
++ AK S ++
Sbjct: 287 HALPAKMSVPVV 298
>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 298
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 66/138 (47%)
Query: 45 SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
S+ V E+RR++E + L ++R +V + +T++ +Q ++GG++++ L
Sbjct: 152 SEIVLEEYRRIVELLRAQVPLEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDL 211
Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
+ + R+ + +A + A ++ +PF +Y +P + + L G L
Sbjct: 212 AASSILRRRQSLRRQKAAMAQIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFL 271
Query: 165 LGVAAAFMLIGIMVMRLM 182
+ + A +LIG +R +
Sbjct: 272 ILGSLASILIGGEAIRFV 289
>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
voltae A3]
gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
Length = 294
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
L + + KF + P AL I+V S+ +G V +++ I+ V F ++I
Sbjct: 73 LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
LS +S+ + + + +I + GGNL+E+L L++ L D N+K Q L
Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKN--QLL 190
Query: 123 SMEAKASAWIIGSLPFCV 140
S+ + + +G + C+
Sbjct: 191 SVASNGLS--VGIIILCI 206
>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
Length = 256
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRY 75
P L ++ +V AG+ + +A V+ G P + FRRV+ + GL++ E++ R+
Sbjct: 42 PQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEALWRVASE 101
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
+P F+ +++ ++ G L E L +R
Sbjct: 102 LPSPNFRRFALIVAEGARSGARLGEVLGVAAR 133
>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 295
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ I +R P+ LD++ V AGL A+ + + S P E R +
Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
+G+S E+ ++ + ++VS F + + +LG + + L ++ +R A+ +
Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253
Query: 121 ALSMEAKAS 129
A KA+
Sbjct: 254 AAKAVPKAT 262
>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 285
Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ KKRTA +P+ +D + ++RAGLP+ +A+ + + + +R FR
Sbjct: 94 LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
G S+ ++ + + + ++GG +L + L L+ LR+ ++++
Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213
Query: 120 QA 121
+A
Sbjct: 214 EA 215
>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60
+ KR + L+ IV V AG V A+ Q P+ E R+I+
Sbjct: 47 VDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLE 106
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
G S +S + +QEVS F+T + + + GG + + AL +LSR L +++ +
Sbjct: 107 GGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRT 166
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
+ E +S + + + +V +P +M
Sbjct: 167 RG---EQASSKLVFPMMVIFMIVIVLVGTPAFM 196
>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
[Shewanella sediminis HAW-EB3]
gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
transmembrane protein [Shewanella sediminis HAW-EB3]
Length = 321
Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
++ + +R FP+ALD++V AGL + A VA + S + SE V
Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
GL++ +++ L+++ ++ IS +LG ++E L S R+++ +A
Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278
Query: 118 KVQALSMEAK 127
+ QA + K
Sbjct: 279 EEQAAKLAVK 288
>gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum
ATCC 824]
gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum
ATCC 824]
gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA
2018]
Length = 396
Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
AG + ++++++ D + RR+I+ G+ SI + V+Y FF +++
Sbjct: 74 AGFNICESLSIMY----DKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPYFFKSML 129
Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144
+ + GNLSE NL +D+ + K++ A + A A+ I L F VS ++
Sbjct: 130 FIGEE-SGNLSEVFRNLGEYYKDQWKTEEKIKNATTYPAIVFAFTIIILVFLVSKVI 185
>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
Length = 282
Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIET 58
K+++ R K D P +D++ V++GL + ++ + VG +D R+++
Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185
Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+ L ++ + + +P +EVS + + G ++ E L LS +R+ + +K +
Sbjct: 186 IEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTE 244
Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
+ AK S ++ L F ++ +PG M V+
Sbjct: 245 EIIGKLSAKMSIPLV--LFFMFPVVIIIAAPGIMRVM 279
>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 286
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64
+K+ A+F + P LD+ +++ LPV+ A+ I +S D + S E R + LG S
Sbjct: 135 QKKKAQFESEIPRFLDLFQTAIKINLPVATAIK-ITAESIDGILSEELLRALVVTELGTS 193
Query: 65 -LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
+S+ + + + S F I Q G +++E++ SR ++ + AK QA
Sbjct: 194 NWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQA-- 251
Query: 124 MEAKASAWII 133
AK ++ I+
Sbjct: 252 --AKTTSLIL 259
>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
Length = 326
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
+K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G + M + + +VS F T + + G +++EAL S +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284
Query: 118 KVQALSMEAK 127
+ +A ++ K
Sbjct: 285 EEKANTLPTK 294
>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
Length = 298
Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
++ L +RT + P LDII ++ AG ++ A+ V + + P+ E RRV+
Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
G + +ES+ + + + +S + I + G +L L + R+ + M+A+
Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259
Query: 120 QALSMEAK 127
AL K
Sbjct: 260 MALKAPVK 267
>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 330
Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54
K+ I KR A+ ++ FP+ALD+++ V AG + A+ + + S + EF
Sbjct: 156 KYWINKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFEL 215
Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
V G + + M + +++ F TV+ + G ++++AL + +RD++
Sbjct: 216 VSHEIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRV 275
Query: 115 MKAKVQALSMEAK 127
M+A+ +A + K
Sbjct: 276 MRAEEKANKLPTK 288
>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
Length = 259
Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67
+F L + S+ AG + +AV + D +R+ + + V+E + GL +++
Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135
Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119
I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V
Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
A ME K I+ +PF + V +PGY VL + P G +L
Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236
>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
Length = 259
Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67
+F L + S+ AG + +AV + D +R+ + + V+E + GL +++
Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135
Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119
I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V
Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195
Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
A ME K I+ +PF + V +PGY VL + P G +L
Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236
>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 318
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
M L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+
Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A
Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
+ A + K + L++F P + VL+
Sbjct: 270 EELAAEIALK-----------LLFPLMFFIFPTLLAVLVG 298
>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 312
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+ +KKR + L +FP +++ S+ AG DA+ + ++ + E R +
Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
G SL +++ M R +Q + F +++ G LSE L + +R+ K
Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRK 272
>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CMR15]
Length = 315
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
IK R + + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ +
Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRA 214
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
GL +++ + + +VS ++ + G +++++L S +LR +++M A+ +A
Sbjct: 215 GLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274
Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
AK ++ L FC+ +Y
Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294
>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 324
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 6 KKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
K RT + L D P+ALD++V V AG+ + A+ + + SS + E ++
Sbjct: 165 KVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELR 224
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + SES+ + + L++V+ T+I G +++ L S +R + +A+
Sbjct: 225 AGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEI 284
Query: 121 ALSMEAKASAWIIGSLPFCV 140
A M K ++ L FC+
Sbjct: 285 AAKMPVK----LLFPLVFCI 300
>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 286
Score = 40.8 bits (94), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
+P+ +D + +VRAGL + +AVA + + D +R FRR + + + + S+ + R
Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169
Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120
+ + + ++GG +L L LS LR+ ++A+++
Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELE 215
>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 313
Score = 40.8 bits (94), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R K L FP +++ +V AG + A+ I + EF + + H G
Sbjct: 162 INRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIHAGTP 221
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMK-AKVQ 120
+ +++ M M + ++ F I V ++ G L++ L + ++ +RD R+ M+ A +
Sbjct: 222 MVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRDASKRELMEVAGKR 281
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
+SM + G LP T+V+ PG
Sbjct: 282 EISMLVPV---VFGILPL---TIVFAVFPG 305
>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
Length = 326
Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIE 57
+ + R + FP+ALD+++ V AG + D V VG+ S + EF V
Sbjct: 165 RRRVDSRKEEITRGFPDALDMMLVCVEAGQSL-DQCIVRVGRELRASYPALAEEFEMVAY 223
Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A
Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283
Query: 118 KVQALSMEAKASAWIIG 134
+ A + K + +G
Sbjct: 284 EEAANKLPTKMTLATMG 300
>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 40.8 bits (94), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I++R + P+ALD++ SV AGL A+ + QS+ + EF +++ H+G
Sbjct: 157 IRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECHMGKP 216
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNL 98
E++ M + + ++S F I + LG GN+
Sbjct: 217 RREALRDMADRVDVDDLSTFCGSIILADTLGISIGNI 253
>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 324
Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
+K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++
Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + ++ + ++++ F ++ + G ++SE+L R+L D + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
A AK + ++ L FC+ P M VL+ H+
Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311
>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 273
Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+KR + P+ LD++ +V AGL A+A + + SEF+ + LG S
Sbjct: 118 RKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTSR 177
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALS 123
++ + + + + F T + +LG LS+ L LS +R D + ++ K Q L+
Sbjct: 178 RDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHLN 237
>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 299
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++
Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ + + + ++ + GG+L+++L L++ L D K K ++ +++ AS
Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVT----ASG 198
Query: 131 WIIGSLPFC 139
IG + C
Sbjct: 199 LAIGFIILC 207
>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 324
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
+K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++
Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + ++ + ++++ F ++ + G ++SE+L R+L D + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
A AK + ++ L FC+ P M VL+ H+
Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311
>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 291
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
+ T++ L P+ +++I +V AG PV A+ V S P+ R + H G SL
Sbjct: 142 RATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSL 201
Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
++S + Q VS F+ + + GG L++ L N
Sbjct: 202 PAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHN 240
>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2083]
gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium HTCC2083]
Length = 323
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
I R + FP++LD+++ V AG + ++ + + S P + E+ V +
Sbjct: 167 IDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKA 226
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G ++ M +Q+V+ F TV+ + G +++EAL + +RD++ M+A+ +A
Sbjct: 227 GKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 286
Query: 122 LSMEAKAS 129
+ K +
Sbjct: 287 NKLPTKMT 294
>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
Length = 327
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
+ R + FP++LD+++ V AG + + + + S + EF V
Sbjct: 167 VDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 226
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A
Sbjct: 227 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAA 286
Query: 122 LSMEAKAS 129
+ K +
Sbjct: 287 NKLPTKMT 294
>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 304
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAV---AVIVGQSSDPVRSEFRRVIETQHLGL 63
++TA F P+ LD++ V AGL + A+ A + + P+ +EF VI G
Sbjct: 151 RKTAIF-HALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGR 209
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
SE++ + L ++ +++ +LG +L + L S LR ++ A+ +A
Sbjct: 210 PRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERA-- 267
Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
AK + ++ L FCV P +M VL+
Sbjct: 268 --AKTAVKMLFPLTFCV-------FPAFMVVLL 291
>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 284
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
++K + K + D P +D++ +V+ G+ + A VA+ + + + R+I
Sbjct: 129 ILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 188
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
L LS+++ + +P E+ F TV+ G ++ L LS +R+ + + + +
Sbjct: 189 LT-GLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEEK 247
Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
++ AK S +I + F + L+ +PG M V N
Sbjct: 248 LGTLSAKMSIPLILFIMFPIIILIL--APGIMRVFPN 282
>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
Length = 258
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPV-RSEFRRVIETQHLG 62
K+R D P +D++ SV AGL A+ IV ++ +D V EF V++ +G
Sbjct: 104 KRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKIG 163
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS---RILRDRKNMKAKV 119
S ++++ M + + E++ F V+ G ++S+ L + S R+ R + KA
Sbjct: 164 SSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAGA 223
Query: 120 QA 121
QA
Sbjct: 224 QA 225
>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 327
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
+++R FP+ LD+++ V AG + A+ + + SS P + EF V
Sbjct: 169 VEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKA 228
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G ++ + +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A
Sbjct: 229 GKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288
Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMN 153
+ K + A ++ ++P + LV ++ G M
Sbjct: 289 NKLPTKMTLATMMLTVPPLLIILVGPSAKGIME 321
>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 295
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
+PN +D +V VRAGL + + + + ++ +R F G +L S+ + R
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177
Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ + + +Q+GGN L L +L +LR + + +V A A +
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
+ P+ + L+ + PG + V + P G M+L V A L +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283
>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
Length = 295
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64
+ + KF + P AL +++ S+ +G V DA+ ++ V F +++ LS
Sbjct: 77 ESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLS 136
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
+SI + + + +I + GG L+E L L++ L D +N+K ++ +++
Sbjct: 137 FEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTA 196
Query: 125 EAKASAWII--GSLPFCVSTLVYFTSPGYMNVL 155
A II G +P + GY+N +
Sbjct: 197 NGLAVGLIIICGVIPATAGII-----GGYLNAI 224
>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
Length = 238
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
+K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G
Sbjct: 83 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+ E++ M+ + L ++ F T + ++G +L + L S +R + +A+
Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 197
>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 295
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
+PN +D +V VRAGL + + + + ++ +R F G +L S+ + R
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177
Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
+ + + +Q+GGN L L +L +LR + + +V A A +
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237
Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
+ P+ + L+ + PG + V + P G M+L V A L +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283
>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 293
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
P LD + +V AGL ++ A+ V + D +RSEF V+ GL+ ++++ R
Sbjct: 151 PVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALRRFDER 210
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
++E++ F + ++G L+ L S R + +A + L+MEA
Sbjct: 211 QDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRA--EKLAMEA 259
>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
Length = 161
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I +R A+ L +FP+ +++ +VRAG + A+ + S + EF R++ G+
Sbjct: 3 ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
L+E+++ R + + F+ ++V + G L+
Sbjct: 63 LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLA 97
>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 295
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + + P E R + +G+S ++ + R
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVSRRQAFEELRRR 208
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
++V+ F T + +LG + E L ++ +R A+ +A KA+
Sbjct: 209 NDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262
>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
Length = 292
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
P+ LD++ V AGL A+ + G+ P E R ++ +G+S ++ + R
Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVSRRQAFDELRRR 204
Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114
++V+ F T + +LG + E L ++ +R D +N
Sbjct: 205 NDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQN 245
>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
Length = 316
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
++ R ++ FP++LD+++ V AG + ++ + + + P + EF V +
Sbjct: 161 VEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKA 220
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G + + M + ++S F TV+ +Q G ++S+AL + +RD++ M+A+ A
Sbjct: 221 GKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAA 280
Query: 122 LSMEAK 127
+ K
Sbjct: 281 NKLPTK 286
>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 296
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
+K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G
Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200
Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
+ E++ M+ + L ++ F T + ++G +L + L S +R + +A+
Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255
>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 351
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
K + K+R + P AL I + AG+ +++A+ + P+ EF VI
Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
G S E++ + M + VS I + GGNL+E L L+
Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLA 269
>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 303
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ + +R + ++FP+A D+++ V AG+ + A +G+ ++ +R + + E H
Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTEEIRIKSEALAEELH 192
Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
G + +++ + + E+ F+ +++ + G ++ E+L S LR ++
Sbjct: 193 WTNLEMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252
Query: 114 NMKAKVQALSMEAK 127
M+A+ A + K
Sbjct: 253 QMRAEELAAKIPTK 266
>gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
Length = 401
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 27 VRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
+RAG+PV +A ++ Q+ S P++ +V E G++ S++ + + PL V+
Sbjct: 75 IRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPLLFVNMMR 134
Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST-LV 144
+ GN+ + L L+ L + N+K K+Q+ A I+ L V L+
Sbjct: 135 A-----GEATGNVDDTLDRLASTLEKQYNIKKKIQS----AMTYPAILSLLTLVVGMFLM 185
Query: 145 YFTSPGYMN 153
F P +M+
Sbjct: 186 VFIVPTFMD 194
>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
Length = 191
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQHLGLSLSES 68
F N L ++ S++AG ++++ + + + ++P+ + RR+I+ L ++L +
Sbjct: 49 FQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIALEQL 108
Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
L+E F+ VI + GGN+ E L + L+ + + + +++ L
Sbjct: 109 FMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL 162
>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
+++R K FP++LD+++ V AG + ++ + + +S P + EF V +
Sbjct: 164 VEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKA 223
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120
G + + M +Q++S F TV+ +QSQ G ++++AL + +RD++ M+A+
Sbjct: 224 GKDKEKVLRDMGTRCGVQDISSFVTVM-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEA 282
Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
A + K + A ++ ++P + LV + G +N+
Sbjct: 283 ANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNM 317
>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
Length = 301
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIET 58
I+KR + +F + + + S+ AG +A + S + E + VI
Sbjct: 113 IEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIR- 171
Query: 59 QHLGLSLSESISRMVRYMP----LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
GL + E I +++ M ++E+S F+ V+ V + GGN+ + + + +
Sbjct: 172 ---GLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKME 228
Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
++ ++Q + K I+ +PF + + + Y+++L + G +++ + A ++
Sbjct: 229 VELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSIL 288
Query: 175 GIMVMRLMINFDV 187
R MI V
Sbjct: 289 SAAWSRKMIRIGV 301
>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 305
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
++++ ++ + FP+ +D+++ AG+ + + + + + P S+ +++ +
Sbjct: 151 VREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 210
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A
Sbjct: 211 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKA 270
Query: 122 LSMEAKAS 129
++ AK S
Sbjct: 271 HALPAKMS 278
>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 285
Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
++ KKR+A +P+ +D + ++RAGLP+ +A+ + + + +R FR
Sbjct: 94 LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
G S++++ + + + ++GG +L + L L+ LR+ ++++
Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213
Query: 120 QA 121
+A
Sbjct: 214 EA 215
>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 270
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVS-------DAVAVIVGQSSDPVRSEFRRV 55
+L+++R F AL + S+ AG V D + ++ + V E +
Sbjct: 80 YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139
Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
G + E++ R ++++ F+ V + + GG+L E + S ++ ++ +
Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199
Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
++ + + + A + + P + FTSP YM L + G ++ GVA I
Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258
Query: 176 IMVMRLMINFDV 187
+M +I+ V
Sbjct: 259 AWLMLKIIDIRV 270
>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 290
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60
++KR + L + P L ++ V AG V A+ V + P+ E R+ +
Sbjct: 137 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTVAEWE 196
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114
G S ++ + + +QE++ F+T + + + GG + AL LS+ L ++
Sbjct: 197 SGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRT 251
>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 320
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGL---PVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
K R + FP+ L++IV + AGL P VA + S + E +++ +
Sbjct: 165 KNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMT 224
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+ ++M +PL E+ F+ + + G S A+ L I+ R N + +
Sbjct: 225 NDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTL--IIEQRGN-----RLM 277
Query: 123 SMEAKASAW-IIGSLP--FCV--STLVYFTSPGYMNVLIN 157
++E KA+ ++ +LP FC+ + V P ++VL N
Sbjct: 278 AIEEKAARLPVLMTLPLIFCIMPAVFVVLVGPAVLSVLDN 317
>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 295
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
I+ R P+ LD++ V AGL A+ + + P E R + +G+S
Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++ + R ++V+ F T + +LG + E L ++ +R A+ +A
Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257
Query: 125 EAKAS 129
KA+
Sbjct: 258 VPKAT 262
>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
Length = 320
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
+K+ I+KR+ K P+ALD+ V AGL + DA V + P E
Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSL-DAALARVSREIGPAAPEL-----ADE 213
Query: 61 LGLSL---------SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
LGL+ E++ + R + +V + + G L++AL L+ RD
Sbjct: 214 LGLTAVELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRD 273
Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLIN 157
+ MKA+ +A + A + +I F + L V P + VL
Sbjct: 274 TRMMKAEEKAARLPATLTVPMIA---FILPPLFVVLIGPAIVQVLTT 317
>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 300
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 57/127 (44%)
Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
+++R A P+ LD++ V AGL A+ + + P E R + +G
Sbjct: 141 QAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMG 200
Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
+S ++ + R ++V+ F + + +LG ++E L ++ +R +A+ +A
Sbjct: 201 VSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAA 260
Query: 123 SMEAKAS 129
KA+
Sbjct: 261 KTIPKAT 267
>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 295
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
++KR P+ LD++ V AGL A+ + + P E R + +G+S
Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197
Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++ + R ++V+ F T + +LG + + L ++ +R A+ +A
Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257
Query: 125 EAKAS 129
KA+
Sbjct: 258 VPKAT 262
>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 324
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
+ R K +DFP+ALD++ V AGL + DA + V + SD V E ++
Sbjct: 161 VAARQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSDVVAGELDLLLLEMR 219
Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
G + ++ + ++++ F ++ + G ++SE+L R+L D + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDLLRTRRRMR 275
Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
A AK + ++ L FC+ + +V P ++V
Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311
>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 617
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
R +++ F N L I S G+P+ A++++ + P+R E R++ GL LS
Sbjct: 409 RYLRYIPIFFNRLATINES---GVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSR 465
Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
+ R + + +V+ T+++ + GNL+E L
Sbjct: 466 AFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVL 500
>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
QCD-76w55]
Length = 317
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)
Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
K L KR K + + II+ + +S ++ + Q S+P+ SE ++ +
Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186
Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS--EALANLSRILRDRKNMKA 117
LG+ + E +S + R + + FS V S L S + L D + +K
Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246
Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRGHM-LLGVAAAFML 173
++ M ++I + F + L+ F S GY++ +IN+ G M L G+ + +L
Sbjct: 247 DLRKEIMGPVRESYI---MVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILL 303
>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
Length = 295
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHL 61
+ + KF + P AL ++ S+ +G V++A+ ++ + V EF + +IE ++
Sbjct: 76 EGKIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYS 135
Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
+I+ M +++ +I + Q GG L+ L L++ L D N+K ++
Sbjct: 136 FEDAMTTITENSDSMVFRQIG--RLIIENRKQ-GGELASTLRTLAKTLEDLMNIKQQL-- 190
Query: 122 LSMEAKASAWIIGSLPFC 139
+ A+ ++G + C
Sbjct: 191 --LSTTANGLVVGLVILC 206
>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 301
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
++ P AL I++ ++ +G +++A+ +V + V + F++V+ E Q + S E+++
Sbjct: 87 NNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQKI--SFEEAMT 144
Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
+ + + + ++ + GGNL+++L L++ L D + K ++ +++ A
Sbjct: 145 IVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVG 204
Query: 131 WII--GSLP 137
+II G +P
Sbjct: 205 FIILCGVIP 213
>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 285
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 3/160 (1%)
Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
+RTA + +P+ +D + ++RAG+ + +A+ + + +P+R F R L
Sbjct: 100 RRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYRASGQLH 159
Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125
S++ + + + + V ++GG +L + L LS LR+ + +++++A
Sbjct: 160 GSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEARQSW 219
Que