BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 Query: 181 LMINFDV 187 LMINFDV Sbjct: 181 LMINFDV 187 >gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 142/186 (76%), Positives = 173/186 (93%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L D RGH++LG+AA M++G ++MR Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321 Query: 181 LMINFD 186 MINFD Sbjct: 322 TMINFD 327 >gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 335 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 115/184 (62%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH ++G +A +M IGI+VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV ALS Sbjct: 212 SIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 335 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL Sbjct: 152 LIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQALS Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL Sbjct: 152 LIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652] gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512] Length = 335 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3] Length = 335 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5] gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771] Length = 335 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRR+IE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 336 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 111/183 (60%), Positives = 152/183 (83%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL+ Sbjct: 154 IKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLN 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALSM Sbjct: 214 VPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALSM 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G +A +M IGI +MR MIN Sbjct: 274 EAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMIN 333 Query: 185 FDV 187 FD+ Sbjct: 334 FDI 336 >gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 336 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PV++EFRRV+E+Q +GL Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021] gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 336 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 336 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 335 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+R+GLP++DAV ++ ++ +PVR+EFRRV+ETQ +GL Sbjct: 152 LIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S++++ +RM +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV ALS Sbjct: 212 SMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LVY TSP YM +L DPRGH+++ +A +M G+++MR M+ Sbjct: 272 MEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4] Length = 334 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 151/184 (82%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++R KFL +FPNALD++VRS+++GLP++DA+ +I + +PV++EFRRV++ Q LG+ Sbjct: 151 LIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQLGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ RM MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV ALS Sbjct: 211 TVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVSALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+ LVY +SP Y+ VL DPRGHM+LG +A +M IGI VMR MI Sbjct: 271 MEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMRNMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 334 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 109/184 (59%), Positives = 150/184 (81%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+ Sbjct: 151 LLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + I RM+ MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV ALS Sbjct: 211 GIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LV+FTSP Y+++L D RGH++LG +A +MLIGI +MR MI Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 334 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 107/184 (58%), Positives = 151/184 (82%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+ Sbjct: 151 ILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + I RM+ +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV ALS Sbjct: 211 GIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LV+FTSP Y++VL D RGH++LGV+ +MLIGI +MR MI Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMRQMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 336 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 110/185 (59%), Positives = 142/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLGVAA ML GI +M+ M Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDM 336 >gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] Length = 336 Score = 233 bits (594), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 105/185 (56%), Positives = 148/185 (80%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L +R FL +FPNALDI+VRS+++GLP++DA+ +I + +PVR+EF+R++++Q +G Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ E+ +R+ +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+ LVY TSP Y+ +L D RGH++LG +A +M IGI+VMR M Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDI 336 >gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 337 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 108/182 (59%), Positives = 141/182 (77%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +GLS+ Sbjct: 156 KRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLSI 215 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSME Sbjct: 216 PEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSME 275 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA IIG+LPF V LVY TSP YM +L GHMLLG+AA ML GI +M+ MINF Sbjct: 276 AKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMINF 335 Query: 186 DV 187 D+ Sbjct: 336 DM 337 >gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099] gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099] Length = 337 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/181 (59%), Positives = 143/181 (79%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +G+S+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQMGISIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG AA +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 337 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 107/185 (57%), Positives = 146/185 (78%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PVR+EFRR++E Q LG Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++E+ RM MP EV+FF V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LP V+ LVY TSP Y+ L ++ GH++LG++A +M IGI VMR M Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332 Query: 183 INFDV 187 +NF+V Sbjct: 333 MNFEV 337 >gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 337 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 143/181 (79%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PV++EFRR++++Q +GLS+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQMGLSIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 337 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 142/181 (78%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +GLS+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMGLSIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV ALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 335 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 98/182 (53%), Positives = 144/182 (79%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F + FP A+D+IVR V+AGLP++D + +V DPV SEF++V+E Q +G++L Sbjct: 154 KKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQMGVTL 213 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+QA+SME Sbjct: 214 GDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSME 273 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA IIGS+P V++++Y TSP Y+NVL++DPRG+++L +A +MLIG+++M+ MINF Sbjct: 274 AKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMKKMINF 333 Query: 186 DV 187 D+ Sbjct: 334 DI 335 >gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 335 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 98/181 (54%), Positives = 141/181 (77%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q +G+ + Sbjct: 154 KKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQMGVPI 213 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++ ++ R +P E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQA+SME Sbjct: 214 SEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSME 273 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKAS IIG+LP V+ LVY T+P Y++VL GH++L V+ +M G+ VM+ MI+F Sbjct: 274 AKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMKKMISF 333 Query: 186 D 186 D Sbjct: 334 D 334 >gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 102/186 (54%), Positives = 139/186 (74%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFLD P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V +VYF SP Y+++L +P G ++L V+ A+M G+M+M+ Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318 Query: 181 LMINFD 186 MINFD Sbjct: 319 KMINFD 324 >gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 326 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 99/187 (52%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KF+++FP ++D+I+R V+AGLPV+D VI + +PVR EFRR+IE+Q Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E++ R +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+ Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V VY T+P YM VL G +++ +M IG+ +MR Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319 Query: 181 LMINFDV 187 MINFD+ Sbjct: 320 KMINFDI 326 >gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 323 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 97/186 (52%), Positives = 136/186 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL+ P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V +VY SP Y+++L P G +L A +M GI+VM+ Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316 Query: 181 LMINFD 186 MINFD Sbjct: 317 KMINFD 322 >gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 324 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R KFL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KFL P+A+D+IVR ++AGLP+ +++ V+ S +P+RSEF +IETQ Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G ++L +M +GIMVM+ Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 KMINFD 339 >gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 328 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 140/186 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +LIK+R F ++F NA+D+IVR V++GLPV+D + +I +S +PVR+EF+ ++E Q Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L + ++++ MPL EV+FF V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V L+YF+SPGYM+VL + G+M++ +M IG++VM+ Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321 Query: 181 LMINFD 186 MI+F Sbjct: 322 KMIDFK 327 >gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 322 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 138/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R AKF++ FP ++DII+R ++AGLPV D +I ++ +PVRSEFR+++E+Q Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E+ R MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+ Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V V+FT+ YM VL + G+M++ + +M +G+ +M+ Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315 Query: 181 LMINFDV 187 MI+F++ Sbjct: 316 NMIDFEI 322 >gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 94/183 (51%), Positives = 134/183 (73%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R KFL P+A+D+IVR ++AGLP+ D++ V+ + +P+RSEF +IETQ +G+ Sbjct: 141 LKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQAIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L+++ +R+ MPL E +FF VI++Q + GGNLSEAL+NLS++LRDRK M K+QA+S Sbjct: 201 PLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LP V LVY T+P Y+++L P G +LL +A +M GI VM+ MI Sbjct: 261 MEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] Length = 323 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1] Length = 323 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] Length = 323 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KF++ P+A+D+IVR ++AGLP+ D++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/186 (50%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI+VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] Length = 323 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 339 Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 132/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R FL++ PN +DIIVR V+AGLP+SD V V+ ++ +PV +EFR+V ETQ +G+SL Sbjct: 158 KRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVSL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++S+M +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS E Sbjct: 218 AEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG+LPF V +++F +P YM +L G +++ +M GIMVMR MINF Sbjct: 278 AKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMINF 337 Query: 186 D 186 D Sbjct: 338 D 338 >gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 131/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P++SEF ++ETQ Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M IGI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 QMINFD 323 >gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF V+++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P+R+EF +++TQ Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G M+L +M IG+ VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 136/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R A F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL +S++I RM +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M K+Q Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF + Y +SP Y ++L G + L ++ +ML G++VM+ Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316 Query: 181 LMINFDV 187 MI+FDV Sbjct: 317 KMISFDV 323 >gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R +FL+ P+A+D+IVR ++AGLP+ D++ V+ S +P+++EF +IETQ +G+ Sbjct: 141 LKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQTIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+QA+S Sbjct: 201 PIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ MI Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL KR AKF + PNA+D++VR +R G+PV D ++ ++ +PVRSEFR V+ETQ Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLSL E+ +R+ +P EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR M+ KVQ Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA II LPF V+ + TSP Y+++L G + L AA +M IGI ++ Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318 Query: 181 LMINFD 186 MI F+ Sbjct: 319 KMIAFE 324 >gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum gilvum SL003B-26A1] gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum gilvum SL003B-26A1] Length = 339 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR FL++ PNA+DIIVR V+AGLP+ D + ++ ++ DPV EFR+++E Q +GL+L Sbjct: 158 RKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQVMGLTL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ R+ +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ALS E Sbjct: 218 TEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF VS ++Y +P Y+ +L + G+M++ +M IG MVM+ MINF Sbjct: 278 AKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMKNMINF 337 Query: 186 D 186 D Sbjct: 338 D 338 >gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 324 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ +G+ Sbjct: 141 LKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQAIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VM+ MI Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 327 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 88/172 (51%), Positives = 126/172 (73%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +FPNA+D+IVR V+AGLP+ D + ++ ++ +PV+SEFR ++E Q LG+ L +++ R+ Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 MPL E FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LP V +LVY TSP YM +L P G +L +ML+G ++MR MINFD Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326 >gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 338 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 135/181 (74%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F ++F NA+D+IVR +++GLPV D + +I ++ +PV+SEF +++ Q LG+SL Sbjct: 157 KRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGISL 216 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ R+ +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S E Sbjct: 217 DEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSE 276 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG+LPF VS +Y TSP YM++L + G ++L A +M +GI+VMR MINF Sbjct: 277 AKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMINF 336 Query: 186 D 186 D Sbjct: 337 D 337 >gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 188 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL++ ++I RM +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 62 LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V+ Y +SP Y +L G + L ++ +M +GI VM+ Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181 Query: 181 LMINFDV 187 MI+FDV Sbjct: 182 KMISFDV 188 >gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 324 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R FL P+A+D+IVR ++AGLP+ +++ V+V S +P++SEF +IETQ +G+ Sbjct: 141 LKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQAVGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VMR MI Sbjct: 261 TEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMRKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] Length = 340 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R FL++ PN +DIIVR V+AGLP+SD + V+ ++ DPV +EFR++ ETQ +G+SL Sbjct: 159 KRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGISL 218 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS E Sbjct: 219 ADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAE 278 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF V ++Y SP Y+ VL G++++ +M GIMVMR MINF Sbjct: 279 AKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMINF 338 Query: 186 D 186 D Sbjct: 339 D 339 >gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 340 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F+++ PN +DIIVR V+AGLP+ D V V+ ++ DPV +EF +++ETQ +G+SL Sbjct: 159 KKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQKMGVSL 218 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E+ ++ +PL E +FF+ V+++Q GG LSEAL NLSR+LR RK +K K+ ALS E Sbjct: 219 AEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSE 278 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG++P +S ++F +P Y+N+L+ GH+++ +MLIGI+VMR MINF Sbjct: 279 AKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMRQMINF 338 Query: 186 D 186 D Sbjct: 339 D 339 >gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 324 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 128/186 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G ++L +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] Length = 331 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 126/182 (69%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R KF ++F +ALDIIVR V++GLP+++ + +I + PV+ EF+ ++E +G+ + Sbjct: 150 KGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLAVGVDV 209 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV ALS E Sbjct: 210 EEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVSALSSE 269 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASAWIIGSLP V +V SP YM L+ P GH LL +ML GI+VMR MINF Sbjct: 270 AKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMRSMINF 329 Query: 186 DV 187 + Sbjct: 330 KM 331 >gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 339 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 134/182 (73%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR +FL++FPNA+DIIVR +++G+P+ D + + ++ DPV +EF V++ +G+ L Sbjct: 158 KKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQMGMPL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E+I + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++A+S E Sbjct: 218 AEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF V+ L++ SP Y+ +L++ G +L+G+ +M IGI+VMR MI+F Sbjct: 278 AKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMRKMIDF 337 Query: 186 DV 187 + Sbjct: 338 KI 339 >gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 333 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/179 (49%), Positives = 129/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332 >gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 333 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/179 (49%), Positives = 129/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332 >gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 332 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 123/180 (68%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F FPNA+D+IVR +++GLP++D + +I S +PVR EFR++IE +G+ + Sbjct: 151 KKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQMGIPV 210 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ R+ + +P E +FFS VI++QS GGNLSEAL NLS++LR+R+ M K+QA S E Sbjct: 211 PEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQAFSSE 270 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S IIG+LPF V+ +V+ TSP Y+ L GH +L A M GI+VM+ MINF Sbjct: 271 AKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMKKMINF 330 >gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 322 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 141/187 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I ++ +PVR+EFR ++E+Q Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SLSE+ +++ MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L YF+SP Y+++L G + + ++ +M++G++VM+ Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 331 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 121/183 (66%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF F + +D+IVR V++GLP+ + + +I +S P+ +EF+RVI+ +G + Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+S M MPL EV+FF VI +Q Q GGNLSEAL NLS +LR RK + KV+ALS Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LP V LVYF+SP Y+ +L P GH +L V A M GI VM+ M+ Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328 Query: 185 FDV 187 DV Sbjct: 329 LDV 331 >gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 137/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I ++ DPV++EFR ++E+Q Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL L E+ +++ MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L Y +SP Y+++L G + + + +MLIG++VM+ Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 332 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 127/183 (69%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+R AKF NA+D++VR V++GLP+++ + VI +S +P+ EFR V+E Q LG Sbjct: 148 KLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLG 207 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L++++ RM MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ + KV+AL Sbjct: 208 VPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKAL 267 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EAKASA ++ SLP V +VY +SPGYM L G ++ + A +M IG++VM+ M Sbjct: 268 SAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKM 327 Query: 183 INF 185 INF Sbjct: 328 INF 330 >gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31] gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31] Length = 325 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 127/180 (70%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K RT KF + F +A+DIIVR +++GLPV+D + +I + +P+ EFR ++E +G+S+ Sbjct: 144 KARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMGMSM 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM MP E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M K++ALS E Sbjct: 204 DQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA+IIG+LP V L+ T+P YM + D RGH++L VAA +M +GI VMR MINF Sbjct: 264 AVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKMINF 323 >gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000] gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15] gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000] Length = 325 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 125/185 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K RT KF + F +A+DIIVR +++GLPV D + +I + +P+ EFR + E Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA+IIG LP V TL+ TSP YM + DPRGH++L +A +M IGI VMR Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318 Query: 181 LMINF 185 MINF Sbjct: 319 NMINF 323 >gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+RT KF +F +A+DI+VR +++GLPV D + +I + P+ EF+R+ E Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L S+ +M MP E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++ Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++Y T+PGYM L+ DPRG+ +L A +ML GI +MR Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319 Query: 181 LMINFD 186 MINF Sbjct: 320 KMINFK 325 >gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 127/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R K ++ F +ALDIIVR VR+GLP+++ + VI +S +P+R EF + Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+ Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASA IIGSLP V +V+ T+P Y+ L GH++L VA M GI VMR Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 333 NMMNFDM 339 >gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + R KF + F +A+DIIVR +++GLP+ D + +I +S +P+ EFR + E +G+ Sbjct: 142 LAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVAMGV 201 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ALS Sbjct: 202 PLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALS 261 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG+LP V L+ TSP YM L DPRGH++L AA +M IG++VMR MI Sbjct: 262 AEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMRKMI 321 Query: 184 NF 185 NF Sbjct: 322 NF 323 >gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 332 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 130/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AKF +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G ++L +M IGI+VMR MINFD Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331 >gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein secretion [Sinorhizobium fredii NGR234] gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 332 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 131/180 (72%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F +FPNA+D+IVR ++AGLP++D + VI ++ +PV+ EF + Q LGL + Sbjct: 152 RRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLPVD 211 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R+ MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EA Sbjct: 212 EAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEA 271 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K+SA IIG+LPF V+ VY TSP YM++L G M+L +A +M IG ++MR MINFD Sbjct: 272 KSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMINFD 331 >gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 122/184 (66%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R A+F F +ALDI+VR +R+GLP+ + +A+I + +P+ EFR V+E Q LGL Sbjct: 96 LGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLGL 155 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ES++R V P + +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A S Sbjct: 156 SLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAFS 215 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIGSLP V+ L+ P Y+ +L + P GH+LL M +G +VMR MI Sbjct: 216 SEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKMI 275 Query: 184 NFDV 187 NFD+ Sbjct: 276 NFDL 279 >gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10] Length = 327 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 124/181 (68%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F +F NALD+I R V++GLP+++ + ++ +S +PV++EF +++E +G+SL Sbjct: 147 RRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIAVGVSLP 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + RM MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ ALS EA Sbjct: 207 DGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIGALSSEA 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K+SA IIGSLP V +VY T+P YM + P G ++L +M IGIMVMR MINF Sbjct: 267 KSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMRGMINFK 326 Query: 187 V 187 + Sbjct: 327 I 327 >gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 126/184 (68%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K R KF +FPNA+D+IVR +++GLPV + +I +S P+ F++++E +G+ Sbjct: 143 LAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVGM 202 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L +++ +M MP E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+ALS Sbjct: 203 TLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALS 262 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA II SLP V T+V FTSPGYM L D RG+ LL +A A M GI VM+ MI Sbjct: 263 SEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRMI 322 Query: 184 NFDV 187 +F + Sbjct: 323 SFKI 326 >gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 337 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 121/179 (67%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF ++FPNA+DI+VR +++GLPV D + +I +S P+ EF R++E +G+S+ Sbjct: 158 RLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVGVGMSVEG 217 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ +M +P E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ALS EA Sbjct: 218 ALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAI 277 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ASA IIG LP V ++ T P Y+ + DPRG ++L A +M +GI +MR MINF Sbjct: 278 ASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMRKMINFK 336 >gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 326 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 124/181 (68%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF +F NA+D+IVR +++GLPV D +I +S PV EF+ ++E +GL+L Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +M +P E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M K++ALS E Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA IIGSLP V TLV T+P YM ++ D RG ++L +A +M +GI++M+ MI+F Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324 Query: 186 D 186 Sbjct: 325 K 325 >gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] Length = 330 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 127/182 (69%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF ++F NA+D+IVR V++GLPV++ + +I + PV+ EF+ ++E Q +GL+L Sbjct: 149 RKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQRIGLTL 208 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ R+ MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M K+ ALSME Sbjct: 209 EQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSME 268 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA I+ ++PF VS LVY +P Y+ L + G +L A +MLIGI+VM+ MI+ Sbjct: 269 AKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMKNMISI 328 Query: 186 DV 187 V Sbjct: 329 KV 330 >gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 327 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 119/181 (65%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R KF F +A+DI+VR ++ GLPV D +I +S +P+ EFR ++E +GL+L Sbjct: 146 KARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMGVGLTL 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ +M MP E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M K++ALS E Sbjct: 206 AQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSE 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA II SLP V LV ++P YM ++ D RG ++L AA +M G+ VM+ MI+F Sbjct: 266 AIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMKRMISF 325 Query: 186 D 186 Sbjct: 326 K 326 >gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] Length = 330 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 121/181 (66%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L Sbjct: 150 KRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQA + EA Sbjct: 210 EALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQAYAAEA 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +ASA IIGSLP V ++ +P Y+ +L G++LL + +G++VMR MINFD Sbjct: 270 RASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMRNMINFD 329 Query: 187 V 187 + Sbjct: 330 I 330 >gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 331 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 120/181 (66%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +ASA IIGSLP V ++ +P Y+ VL G++LL + G+MVMR MINFD Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330 Query: 187 V 187 + Sbjct: 331 I 331 >gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] Length = 305 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 113/184 (61%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+ +R +FL F A+ +IVR +RAGLPV++ V V+ + PV EFRRV + LG Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ R + L E F + ++VQ + GGNL+E+L NL ILR R+ M+ K++A+S Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG LPF ++ L+ SP YM VL P G +++ A + +G ++MR M+ Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301 Query: 184 NFDV 187 F++ Sbjct: 302 RFEI 305 >gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum JL354] Length = 323 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 123/185 (66%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K+RTA+F FP+A+D++VR +R+GLPV++ +AV+ + PV EF+ +IE +G Sbjct: 140 FMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIGR 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ E++ + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 200 SMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+GSLPF V ++++ +P Y+ D R M+ G+ +M +G+ +M M Sbjct: 260 SESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDER-LMIAGIGGLVWMSLGVFIMSKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] Length = 323 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I KRTA F FP+A++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G Sbjct: 140 FINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIGK 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E + + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 200 TMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+G+LPF V ++++ +P Y++ D R +++G+ +M IG +M M Sbjct: 260 SESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDER-LIVIGLGGMVWMSIGAFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 327 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 116/183 (63%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +RT KF+ FP+A++++VR +R+GLP+++ ++V+ + PV EFR V + +G + Sbjct: 145 INRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMKIGRT 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + E FF I++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 205 MDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIKAMSS 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E+KASA+IIG+LPF V +++ + YM DPR ++ G +M +G+ +M MIN Sbjct: 265 ESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMSRMIN 324 Query: 185 FDV 187 F++ Sbjct: 325 FEI 327 >gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 323 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR F+ FP+AL+++VR +R+GLP+S+ + V+ + PV EF+ V + LG + Sbjct: 141 INKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIRLGRT 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ + L E SFF +++Q + GGNL+E LANL+ +LR R MK K++A+S Sbjct: 201 MEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 E+KASA+I+GSLPF V L+Y +P Y+ D R M+ G+ L +G +M M+ Sbjct: 261 ESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDER-LMVAGIGGLIWLSMGAFIMSRMV 319 Query: 184 NFDV 187 NF++ Sbjct: 320 NFEI 323 >gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 324 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R A+F+ FP+A++++VR +RAGLP+++ + + + PV SEF+ V + +G Sbjct: 141 LAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMRIGR 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L ++ + E FF +++Q + GGNL+E L NL+ +LR R MK K+ A+S Sbjct: 201 TLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+IIG LPF V L+ F SP YM D R M+ G +M IG +MR M Sbjct: 261 SESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQR-LMIAGAGGLIWMSIGAYIMRQM 319 Query: 183 INFDV 187 INF++ Sbjct: 320 INFEI 324 >gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] Length = 323 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKRT +F F +A++++VR +R+GLPV++ + V+ + PV EF+ ++E +G + Sbjct: 141 IKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIGRT 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ES+ + + E +FF +++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 201 MEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 E+KASA+I+GSLPF V L+++ +P Y+ D R ++ G+ +M IG+ +M M+ Sbjct: 261 ESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDR-LIVTGLGGLTWMGIGVFIMAKMV 319 Query: 184 NFDV 187 +F++ Sbjct: 320 SFEI 323 >gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 317 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 112/178 (62%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A F D P ALDI R +RAG PV+D++A++V + P+ EF R + +G +L E++ Sbjct: 140 ATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVRMGNTLPETL 199 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +PL EV+FF+ ++Q++ GGNL E + NL+ LR+R+ ++ K +ALS EA+AS Sbjct: 200 ERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARAS 259 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A I+ +LPF V+ L+ + Y+ L +DPRG + AA+ + +GI VM M +V Sbjct: 260 AVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMVRMGKLNV 317 >gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] Length = 323 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 119/185 (64%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IKKRT F F + ++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G Sbjct: 140 FIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIKIGK 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ +S+ + + E +FF+ +++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 200 TMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+GSLPF V L+Y +P Y+ + R M+ G+ +M IGI +M M Sbjct: 260 SESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEER-LMVTGLGGLVWMSIGIFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 310 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR A+F FP+A+D++VR +R+GLPV++ V+ + PV EF+ V+E +G + Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + E FF I +Q + GGNL+E LANLS +LR R MK K++A+S Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 EAKASA+I+G+LPF V +V+ +P Y+ + R ++ G+ +M IG +M M+ Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQR-LIVAGIGGLIWMSIGAGIMAKMV 306 Query: 184 NFDV 187 NF++ Sbjct: 307 NFEI 310 >gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 324 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR F+ P+ALD++VR +R+GLPV++ + V+ + PV EF+ V + +G + Sbjct: 142 INKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVGRT 201 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ + L E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 202 MEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSS 261 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 E+KASA+I+G+LPF V L+Y+ +P Y+ D R ++ G+ ++ IG +M M+ Sbjct: 262 ESKASAYIVGALPFIVFALIYWINPVYLGKFFVDER-LIIAGLGGLTWLGIGAFIMAKMV 320 Query: 184 NFDV 187 +F++ Sbjct: 321 SFEI 324 >gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510] gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510] Length = 319 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 100/156 (64%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +RT +FLD P+A+D++VR+ RAG+PVS+A+ ++ +PVRSEFRRV + +G+ Sbjct: 136 LTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVSIGV 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + + L + FF + VQ + GG L+E L NLS ILR RK+M+ KV+AL+ Sbjct: 196 DLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVKALT 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 E + SA I+ SLPF L++ P Y+ L DP Sbjct: 256 AEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDP 291 >gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 205 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 115/184 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199 Query: 184 NFDV 187 N D Sbjct: 200 NLDT 203 >gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 205 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199 Query: 184 NFD 186 N D Sbjct: 200 NLD 202 >gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 202 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 17 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 76 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 77 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 136 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 137 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 196 Query: 184 NFD 186 N D Sbjct: 197 NLD 199 >gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 204 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 19 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 78 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 79 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 138 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 139 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 198 Query: 184 NFD 186 N D Sbjct: 199 NLD 201 >gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 200 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 15 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 135 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 194 Query: 184 NFD 186 N D Sbjct: 195 NLD 197 >gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 212 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 27 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 86 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 87 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 146 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 147 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 206 Query: 184 NFD 186 N D Sbjct: 207 NLD 209 >gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 217 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 32 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 91 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 92 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 151 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 152 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 211 Query: 184 NFD 186 N D Sbjct: 212 NLD 214 >gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 38 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 97 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 98 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 157 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 158 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 217 Query: 184 NFD 186 N D Sbjct: 218 NLD 220 >gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC 10229] gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243] gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei 1710b] gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 331 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 216 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 31 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 90 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 91 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 150 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 151 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 210 Query: 184 NFD 186 N D Sbjct: 211 NLD 213 >gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 326 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 114/181 (62%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F P AL+++ R++RAG + + ++V + +DP+R EF+ +E + G+ ++ Sbjct: 146 KRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFGMGVT 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N+S ++R+R +K ++Q LS E Sbjct: 206 TALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V+ ++ F +PGY+ +L DP G ++ A + +GI+V+R M+ + Sbjct: 266 RMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKMVRIE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 200 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 114/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 15 LIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+++L GH +L +AA + IG+ ++R + Sbjct: 135 AEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRKIA 194 Query: 184 NFD 186 N D Sbjct: 195 NLD 197 >gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS] gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS] Length = 305 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F P ALD I RS+RAG +S A+ +I + DP+ EF+ V + + G+ Sbjct: 124 KKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMNFGIPF 183 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ + + + ++SFF + +Q + GGNL+E L L+ +R+R ++ KV+ LS E Sbjct: 184 KEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVRTLSSE 243 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA ++GS+PF +T++ +P Y+ L N P+GH LL +A ML+G+ V+ M+ Sbjct: 244 GRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLNNMVKI 303 Query: 186 DV 187 V Sbjct: 304 KV 305 >gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] Length = 332 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI KR ++F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +S+Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V ++ + + YM DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 332 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI KR +F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 KTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWMGI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 332 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK R KF FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 KTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWMSI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4] Length = 217 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH] Length = 219 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 92 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211 Query: 182 MINFD 186 + N D Sbjct: 212 IANLD 216 >gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264] gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264] gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264] Length = 330 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322 Query: 182 MINFD 186 + N D Sbjct: 323 IANLD 327 >gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160] gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160] Length = 325 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 117/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + A+FL FP+ LD+I+R+VRAG+PV A++ ++ +PVRS FR + ++ L Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + V + + + SFF+ + +Q + GGNL E L NLS I+R R++++ K +A Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF + +Y + Y+++L + GH +L +AA ++IG+ +++ Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 325 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 4 LIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 L +KRT + L P+A D+I R++RAG A+ ++ + +P+ EF V + + Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+S+++ MV +P++++ +F + +Q + GGNL+E L +++ I+R+R + KV+ Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAW++G LPF + L+ +PGY++V DP G + GVA A ML GI+ MR Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318 Query: 181 LMINFDV 187 ++ V Sbjct: 319 KVVRIRV 325 >gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 324 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 106/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR AKF + P+A+D++ R++RAG + ++ +I + SDP+ EFR + + G SL Sbjct: 144 KRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYGFSLQ 203 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P ++ + + +Q + GGNL+E L N+S ++R R + ++ L+ E Sbjct: 204 EAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEG 263 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SAWI+ LPF V+ +++ +PG+M VL D G M++ + ML GI MR +I Sbjct: 264 KLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQIIKIQ 323 Query: 187 V 187 V Sbjct: 324 V 324 >gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 320 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ K + P AL+++ RS+RAG ++ A V+ G+ +PV EF R + Q LGLSL Sbjct: 139 RRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLSLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M P +V F+ +Q + GGNL+E L +S +R R K++AL+ E Sbjct: 199 QAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAW++G LPF V+ V +PGY+ L +P GH ++G A +GI+ +R + Sbjct: 259 GRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLTQL 318 Query: 186 DV 187 ++ Sbjct: 319 EI 320 >gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis MSMB43] Length = 328 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 114/185 (61%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+A+D++VR+VRAG+PV A+ +S +PVRS F + + + Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + + + + SFF+ + +Q + GG+L+E L NLS I+R R++++ K +A Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E K SA II ++PF + +Y + Y+ +L + GH +L +AA + +G++++R Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320 Query: 182 MINFD 186 + N D Sbjct: 321 IANLD 325 >gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 103/176 (58%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D P ALD I RS+RAG ++ A+ ++ + DP+ EF+ V + G+ ++I Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++FF + +Q + GGNL+E L LS +R R ++ K++ LS E +ASAW Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++GS+PF + ++ +PGY++VL P GH L A M +G +++ ++NF V Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322 >gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 108/182 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+ Sbjct: 151 KQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIPF 210 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I + + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E Sbjct: 211 KDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSE 270 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAWI+G++PF + ++ +PGY++VL + P+G L+ + M +GI V+ ++ Sbjct: 271 GRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQI 330 Query: 186 DV 187 V Sbjct: 331 KV 332 >gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 327 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 112/181 (61%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F P AL+++ R+++AG S + ++V + ++P+R EF++ +E + G+ ++ Sbjct: 147 KRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFGMGVT 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E Sbjct: 207 VALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V V +PGY+N+L + G L + A M +G++V+R M+ D Sbjct: 267 RMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKMVRID 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 326 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 112/181 (61%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR +F P ALD++ R++RAG + + ++V + ++P+ SEFR +E + G+ ++ Sbjct: 146 KRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFGMGVT 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E Sbjct: 206 VALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V V +PGY+ +L +P G +L+ V M +G++V+R M+ + Sbjct: 266 RMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKMVRIE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 329 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 112/182 (61%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R P ALD+I R++RAG S + + + S+P+ EFR V + + G SL Sbjct: 148 NQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEINYGTSL 207 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AK++ LS E Sbjct: 208 QQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSE 267 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+G +PF ++ L+ F +P +M+ L DP G ++L A M+IG++++R ++ Sbjct: 268 GRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLRRIVRI 327 Query: 186 DV 187 V Sbjct: 328 RV 329 >gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 325 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 110/182 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K P+A+D+I R++RAG + A+ ++ + +P+ EF E + G+SL Sbjct: 144 RKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVSL 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++ + + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E Sbjct: 204 DEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+G LPFC + ++ +P +M VL DP G ++G+A M++G++ MR +I Sbjct: 264 GRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIRI 323 Query: 186 DV 187 V Sbjct: 324 RV 325 >gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 317 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G S Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKS 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ Sbjct: 194 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 253 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 254 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313 >gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110] Length = 330 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 110/187 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H +R A P+ALD++ R++RAG + +V +I + S+P+ EFR V + Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++++ M +PL ++ +F + +Q GGNL+E L NLSR++RDR + A+V+ Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF + L+ +P +M+ L DP G + M+IG +++R Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323 Query: 181 LMINFDV 187 ++ V Sbjct: 324 KIVKIRV 330 >gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 235 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 116/177 (65%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +G Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +AL+ Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 E + + II ++PF + ++ + Y+ +L GH +L +AAA ++IG++V+R Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIR 226 >gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 322 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 114/181 (62%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + F FP A++++ R++RAG S + ++ + +PV SEF + E G ++ Sbjct: 142 KRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYSFGKTME 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R ++ V+ALS E Sbjct: 202 EALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S WI+ +P + ++Y+++P Y+N+ + +P G +L A ++GI+V++ +I Sbjct: 262 RLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIKQIIKMR 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 319 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G + Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKN 195 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ Sbjct: 196 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 255 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 256 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315 >gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 320 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 110/180 (61%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P+A+D++ R++RAG +S A+ V+ +S++P+ EF V + Q GL + Sbjct: 141 RLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQKFGLQFRD 200 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ +P +++SF T I VQ + GG+L++ L +R++R+R ++ +++ + + + Sbjct: 201 ALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGR 260 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + WI+ +LP + L+ +PGY ++L +DP G +LLG +LIG ++ +++ V Sbjct: 261 LTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIISRVVDIKV 320 >gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 325 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL KR + P+A+D+I R++RAG S A++++ + P+ EFR E + G Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++G LPF + ++ +PG+MNVL DP G ++G A M G++ MR + Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666] Length = 325 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + P+ALD++ R++RAG A+ ++ + +DP+ EFR + + G+++ Sbjct: 144 RKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAM 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M +P ++ +F + +Q + GGNLSE L ++S I+RDR + +V+ LS E Sbjct: 204 PDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K SAW++ LPF + ++ T+P ++ VL DP G +L A M +GI+VMR +I Sbjct: 264 GKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKIIRI 323 Query: 186 DV 187 V Sbjct: 324 RV 325 >gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645] gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645] Length = 320 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R AKF P+AL++I R++RAG + ++ +S DP+ EF +V E Q+LG+SL Sbjct: 139 KARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLGVSL 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I+ M +P ++ FF T I +Q Q GG+L+E L + R++R R + +QAL+ E Sbjct: 199 EDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ LP + ++ +PGY+ L DP G+ +L VA LIG V++ +I+ Sbjct: 259 GRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKIIDI 318 Query: 186 DV 187 V Sbjct: 319 KV 320 >gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44] Length = 329 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 110/174 (63%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL Sbjct: 149 QRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEINYGTSLH 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS + Sbjct: 209 QALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADG 268 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + SAWI+G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 269 RMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322 >gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 108/181 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KR KF P+ALD+IVRS+RAG P + A+ ++ + DP+ +EF V + GLSL Sbjct: 143 NKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEITFGLSL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + + + + S +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ALS E Sbjct: 203 EQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWII P + ++ +P + + + P + + + L+G +M M+NF Sbjct: 263 GRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMYRMVNF 322 Query: 186 D 186 D Sbjct: 323 D 323 >gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 325 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 106/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + P+A+D+I R++RAG S A+ ++ + P+ EFR E + G++L Sbjct: 145 KRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYGIALD 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + AK++ LS E Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++G LPF ++ +P +M VL DP G ++G A M++G++ MR +I Sbjct: 265 RMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 322 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 107/181 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KR KF P+ALD+IVRS+RAG P S A+ ++ + DP+ +EF V + GLS+ Sbjct: 141 NKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITFGLSI 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + + + + S +S+QS+ GGNL+E LANLS ++R+R+ ++ K++ALS E Sbjct: 201 EQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWII P + + +P Y + ++P + + + L+G +M M+ F Sbjct: 261 GRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYRMVTF 320 Query: 186 D 186 D Sbjct: 321 D 321 >gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 328 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F + P+ALD + R++RAG P ++ + ++ + PV EF + G + Sbjct: 148 KRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGNDVR 207 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ MP V T I + + GGNL+E L LSR++R R + K++ LS E Sbjct: 208 RAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEG 267 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++ ++PF ++ + TSP YM VLINDP GH L+ A MLIGI ++ +I Sbjct: 268 RMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIRIQ 327 Query: 187 V 187 V Sbjct: 328 V 328 >gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099] gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099] Length = 323 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 109/180 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF P+ALD+IVRS+RAG P + A+A++ + DP+ +EF V + GLSL Sbjct: 143 KRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEISFGLSLE 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ + + + S +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ALS E Sbjct: 203 QAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWII P + ++ +P + + +P + + ++ L+G +M M+NFD Sbjct: 263 RMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMYRMVNFD 322 >gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 329 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 108/173 (62%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL + Sbjct: 150 RLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEINYGTSLQQ 209 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS + + Sbjct: 210 ALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGR 269 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 SAW +G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 270 MSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322 >gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 325 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 104/173 (60%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+A D+I R++RAG + ++ + DP+ EF V + + G+S+++++ MV Sbjct: 153 QLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALLNMVS 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P++++ +F + +Q + GGNL+E L ++S I+R+R + KV+ LS E + SAW++ Sbjct: 213 RVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSAWVLA 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LPF + L+ +PGY++V DP G L GVA ML GI+ MR ++ + Sbjct: 273 VLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325 >gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +R F D P ALD I R++RAG ++ A+ ++ + +P+ EF+ V + G Sbjct: 138 QLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIGFG 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E+I R+ M +++FF +++Q + GGNL+E L+R +R R ++ K++ L Sbjct: 198 IPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTL 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E +AS W++GS+PF + ++ +P Y+++L RG+ L+ + A M +G +V++ + Sbjct: 258 SSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLKRI 317 Query: 183 INFDV 187 + V Sbjct: 318 VQIKV 322 >gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 325 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + ++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 325 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 107/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ D++ R++R+G + A+ ++ + ++P+ EFR V + + G+S+SE+++ + Sbjct: 153 QLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALTNLAT 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P++++ +F + +Q + GGNL+E L ++ ++RDR + KV+ LS E + SAW++G Sbjct: 213 RVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSAWVLG 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LPF V + +PG++NVL DP G ++ A+ ML GI+ MR ++ V Sbjct: 273 LLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325 >gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 322 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 106/184 (57%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+ Sbjct: 139 LADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIGFGI 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E+I R+ + +++FF +++Q + GGNL+E L+R +R R ++ K++ LS Sbjct: 199 PFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILS 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E +AS W++GS+PF + ++ +P Y+ L P+G+ ++ + A M +G +V++ ++ Sbjct: 259 SEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLKRIV 318 Query: 184 NFDV 187 V Sbjct: 319 QIKV 322 >gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383] gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383] Length = 325 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 119/185 (64%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++++ +++PVR+ FR + ++ + Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + G+ +L +AA + +G++V+R Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 326 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + P+A D+I R++RAG A+ ++ + P+ EFR + + G+S++ Sbjct: 146 KRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEINCGVSMN 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +V +P+ +V +F + +Q + GGNL+E L N++ I+R+R + AKV+ LS E Sbjct: 206 DALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF V + +PGY V D G + GVA + M +G++ +R + Sbjct: 266 RLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLRKTVRIR 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34] Length = 325 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 3/188 (1%) Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E Sbjct: 138 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K+ Sbjct: 198 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKI 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + LS E + SAWI+G LPF + L+ +PG+M VL DP G ++G A M+ G++ M Sbjct: 258 RVLSAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWM 317 Query: 180 RLMINFDV 187 R +I V Sbjct: 318 RKIIRIRV 325 >gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 330 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 270 KLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329 Query: 187 V 187 V Sbjct: 330 V 330 >gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC 13177] gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 325 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 324 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 115/187 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R +F P ALD++ R+++AG + ++ + +DP+ EF + ++ + Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + ++++ FF +++Q + GGNL+E +AN++R++R+R + KV+ Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++ +LPF ++ ++YF +P Y+++L + G + A A M++GI+VMR Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317 Query: 181 LMINFDV 187 M+ V Sbjct: 318 RMVKIQV 324 >gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 321 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 109/182 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R A F D FP+ L+ + RS+RAG S A+ + + SDP+ E RR E Q+LG L Sbjct: 140 RMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQNLGQPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + +P +V FF + + +Q + GGNL+E L L++++R+R ++A+++A+S + Sbjct: 200 EIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQ 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S I+ ++P V+ +++ +P Y I+DP GH L+ L+G +++R ++ F Sbjct: 260 GLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIRKIVTF 319 Query: 186 DV 187 DV Sbjct: 320 DV 321 >gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 330 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 270 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329 Query: 187 V 187 V Sbjct: 330 V 330 >gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K P +D++ R+++AG S A+ + +P EFR + + G+S+ Sbjct: 142 RKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVSV 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P+ ++ +F + +Q + GGNL+E L +S ++R R + K++ LS E Sbjct: 202 QDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAE 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+ LPF + ++ +PG++ VL DP G M++G A M+IGI VM +I Sbjct: 262 GRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIKI 321 Query: 186 DV 187 V Sbjct: 322 RV 323 >gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243] gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98] gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14] gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91] gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9] gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 322 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 106/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP ALD++ R++RAG AV ++ + +DP+ +FR + + + G+ +++++ + Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ +VS+F + +Q + GGNL+E L +S I+R+R + +V+ LS E K SA I+ Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LPF V +V +P +M VL DP G ++G+A ML+GI+ MR +I V Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322 >gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210] gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894] gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112] gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215] gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 322 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R + F P ALDI+ R ++AG PV+ A + + + P+ EF+ + G Sbjct: 140 ISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +PGY+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21] gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21] Length = 320 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RT +F + FP+AL I RS+RAG A+ ++ ++ PV FR E Q LGL + Sbjct: 139 ERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQLGLRM 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + P Y LIN+P G +L AAA ++G +V+R ++ Sbjct: 259 GRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIRKIVRI 318 Query: 186 DV 187 + Sbjct: 319 RI 320 >gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147] gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786] Length = 325 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 104/177 (58%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+ L E++ Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ LS E K SA Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ LPF + L+ +P ++ VL DP G +L+GV M GI+ MR +I V Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325 >gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 322 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 100/171 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F + P ALD + RS+RAG ++ A+ ++ + P+ EF+ V + G+ Sbjct: 142 KRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEISFGIPFK 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R+ + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E Sbjct: 202 EAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + SA ++GS+PF ++ ++ +P Y +VL + P+GH L+ V A M +G Sbjct: 262 RISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFF 312 >gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] Length = 316 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL R K P+AL I+ RS+ AG PV+ AV+++ + DP+ +EF + Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL+ ++ RM +V F+ + +Q + GGNL+E L + + +R+R+ M+ KV+ Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SA I+ S PF V T ++ P + +I++P +M IG +VM Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309 Query: 181 LMINFDV 187 MINF + Sbjct: 310 RMINFKM 316 >gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 325 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + +A+D+I R++RAG S A+ ++ + P+ EFR E + G++L Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SAW++G LPF + L+ +PG+M VL DP G ++G A M G++ MR +I Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 314 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +L ++R A F + P L+I+VRS+RAG P+ A + Q DP SE + Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + R + +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R ++ +V+ Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA + PF ++ L+ +P Y + +P + L VA ++IG +V+ Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307 Query: 181 LMINFDV 187 ++NF + Sbjct: 308 RIVNFRI 314 >gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 110/182 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF P ALD++ R+++AG S + ++ + DP+ EF + ++ + G+S+ Sbjct: 140 KQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEINFGVSV 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + + ++S+F + +Q + GGNL++ +A+++ ++R+R + +++ LS E Sbjct: 200 ADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+ ++P V+ + S Y+ L +D G +L+G+A M+ G++VMR MI Sbjct: 260 GRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMRKMIRI 319 Query: 186 DV 187 DV Sbjct: 320 DV 321 >gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 290 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 106/186 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R KF + P+AL ++ +RAGL +S A+A +V +S P+ EF ++ Q L Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G++L +++S + MP Q ++ + + ++ GG L+E L S +R R M+AK+ A Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K AW++G+LP + ++ P M++L + G L V A F +G+ V+R Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284 Query: 182 MINFDV 187 +I DV Sbjct: 285 IIAIDV 290 >gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii] gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii] Length = 313 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 104/177 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A F P+ALD++ RS+RAG + ++ + P+ +EFR V+E G+S++E Sbjct: 134 RRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVAFGVSVTE 193 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R+ + ++FF T + +Q + GGNL+E L +SR+ R R + AKV+A+S E + Sbjct: 194 ALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGR 253 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SA I+ +LPF + L+ +P Y+ +L DP G ++ V MLIG +V + M+ Sbjct: 254 LSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTKRMVT 310 >gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 328 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + F A+DI R++RAG PV+ A++++ + +DP+ +EF V + G +L Sbjct: 147 EKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIAYGANL 206 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ + L+++ F+ +SVQS+ GGNL+E L NL+ ++RDR ++ KV+ALS E Sbjct: 207 NDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALSSE 266 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAW++ LP +++ +P + + DP LIG++ +R M++ Sbjct: 267 GRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLRSMVDL 326 Query: 186 DV 187 V Sbjct: 327 KV 328 >gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 321 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + + P ALD++ RS+RAG + A V+ + +PV EF R E+Q LGL + Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199 Query: 67 ESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M P +++ F+ +Q + GGNL+E L +++ +R R +K+ AL+ E Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +AS I+G LP ++ ++ +P YM L++DP GHM++ AA L+G+ + + Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319 Query: 186 DV 187 D+ Sbjct: 320 DL 321 >gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca bermudensis HTCC2601] gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. HTCC2601] Length = 321 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+AV+ + DP+ +EF + + G + Sbjct: 140 KKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M + +Q++ F + +S+Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V ++ T P Y + +++ P + A F+ + +MVMR+++N Sbjct: 260 AQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 321 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R A F P AL++I R++RAG ++ ++ + P+ EF R E Q+LG+ L Sbjct: 140 NRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+I M +P ++ FF+T + +Q Q GG+L+E L + ++R+R + ++QAL+ E Sbjct: 200 EEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + +++ + Y L DP GH +L A LIG +V+R ++N Sbjct: 260 GRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] Length = 324 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 99/177 (55%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F P ALD++ R++RAG A+ ++ + DP+ EFR + + + G+ ++ Sbjct: 148 RFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYGVPQQTAML 207 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + ++S+F + +Q GGNL+E L N+S+I+R R + +++ LS E K SA Sbjct: 208 NLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSA 267 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ +PG+M VL DP G + A M++G++ MR +I V Sbjct: 268 WILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKIIRIRV 324 >gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 319 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 98/178 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R L+ FP+AL IVR VR G+PV +A+ V+ P EF R+ + +G L Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +M L E FF+T IS+Q++ GG L++ L L+ ++R R MKA+ AL+ EA Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+G +P + + P Y+ VL G+++L A + G +VMR +I Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315 >gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 322 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR P+ALD++ R++ AG A+ ++ + +P+ SEFR V + + G+ Sbjct: 141 QKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIPT 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++ +++ +P +VS+F + +Q + GGNL+E L N+S ++R R + V+ LS E Sbjct: 201 SEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+ LPF + ++ +P ++++L DP G ++ +A M+ GI VM +I Sbjct: 261 GRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIKI 320 Query: 186 DV 187 V Sbjct: 321 RV 322 >gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 324 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 106/183 (57%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++RT F D +AL +I S+R G ++ ++ + P+ +EF RV+ +LG++ Sbjct: 142 VERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMNLGVT 201 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+++ + + + ++ T + +Q Q+GGNL+E L N++ +R R +K +++ L+ Sbjct: 202 TEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIKTLTA 261 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + S IIG LP + ++Y +PGYM +L P G L+ A LIG++++R ++N Sbjct: 262 QGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIRRIVN 321 Query: 185 FDV 187 DV Sbjct: 322 IDV 324 >gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str. Hildenborough] gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 321 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 108/181 (59%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+ Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4] Length = 321 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 108/181 (59%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+ Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 320 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +P+ EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL RG M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 DV 187 D+ Sbjct: 319 DL 320 >gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2] Length = 319 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 103/179 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K +F+D FP+A+D + R +RAGLP++ AV I ++ P+ + F + + +G+ + Sbjct: 136 RKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELKIGVPI 195 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L + FF+ +++Q GGNL L LS+I+R R+ ++ K +A + E Sbjct: 196 EQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAKAATGE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A+ +G +P S ++ PGY+ L DPRG ++L A + + + MR+++ Sbjct: 256 IRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMRMIMR 314 >gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 321 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 1/173 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + F + P+AL +I RS+RAG ++ AV ++ ++ +P+ FR E Q LGL + Sbjct: 139 KKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQKLGLRI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ M++ M ++ FF TVI++ ++ GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 TDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S +I+ +LP F L Y PGY +V + + +GH + A +IG + Sbjct: 259 GRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFL 311 >gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] Length = 321 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR + FP ALDI+ R ++AG SD++ ++ + + EF+ + + G Sbjct: 139 INKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRINFGND 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ V+ +P F + +S+ + GGNL+E + NLSRI+R R K +V+ LS Sbjct: 199 VHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S W++ PF + ++Y +SP Y ++LIN P G LL ML+GI + +I Sbjct: 259 EGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWISKLIK 318 Query: 185 FDV 187 +V Sbjct: 319 IEV 321 >gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 324 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + PV EF + + Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + A ML+G++ +R Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317 Query: 181 LMINFDV 187 ++ +V Sbjct: 318 KILRIEV 324 >gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + + G Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +PGY+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 320 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +PV EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL +G M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 DV 187 D+ Sbjct: 319 DL 320 >gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G Sbjct: 140 ISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +P Y+ L DPRG L+ + IG M +R +IN Sbjct: 260 ESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIRNIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 320 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 104/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ KF + FP+AL I RS+RAG A+ ++ + PV F+ E Q LGL + Sbjct: 139 ERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQLGLRM 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + +P Y LI +P G +L AAA +IG +V+R ++ Sbjct: 259 GRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIRKIVRI 318 Query: 186 DV 187 + Sbjct: 319 RI 320 >gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 322 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + G Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +PGY+ L DPRG L+ + G + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 339 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 108/186 (58%), Gaps = 1/186 (0%) Query: 3 HLIKK-RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H+ KK R KF P AL ++ RS++AG + ++ + +P+ EF + + + Sbjct: 154 HMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFNY 213 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL +S +++ + + + LQ++ FF T I++Q + GGNL E L ++ ++RDR + ++A Sbjct: 214 GLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKA 273 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E + S I+ LP ++ ++YF + YM +LI P G M++GVA L+G +++ Sbjct: 274 ITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIHK 333 Query: 182 MINFDV 187 ++N V Sbjct: 334 IVNIKV 339 >gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 321 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L +DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 321 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 105/174 (60%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R KF + FP+AL +I RS+RAG + A+ ++ + +DPV F+ E Q LGL Sbjct: 139 IRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQLLGLR 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++E+++ + + ++ FF+T I++ + +GGNLSE L NL++ +R+R ++ +V+ + Sbjct: 199 ITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVRVYTA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + +++G+LP + +P Y +VL + +G +L A ++G+ V Sbjct: 259 QGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312 >gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 313 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 111/180 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL ++R A+F P+AL ++ ++RAG + A+ V+ + P+ EF R + Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ R+ +P ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + SA IIG LP ++ ++ +P Y+ LI +P G ++LG+ AA ++G++++R Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306 >gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 321 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + ++ PGY++ L DPRG ++ + +G + MR +IN Sbjct: 259 ESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMRHIIN 318 Query: 185 FDV 187 F+V Sbjct: 319 FEV 321 >gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43] Length = 325 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P+ D I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P ++ VL DP G +L+G+ A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF + P+A+D+ R++RAG + + I ++SDPV+ EF++++E LG + Sbjct: 145 RRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALGSQVE 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + +PL ++ FF T + +Q Q G N+ L NLS ++R+R NM AK++A + + Sbjct: 205 PALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQ 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA ++ LP V + P Y+ +L DP G A +GI+V+R + N Sbjct: 265 RFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKIANIK 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218] Length = 321 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + PGY++ L DPRG L+ + +G + MR +IN Sbjct: 259 ESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMRHIIN 318 Query: 185 FDV 187 F+V Sbjct: 319 FEV 321 >gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 323 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + FP +LD + RS+RAG S ++ ++ + +DP+ EFR + Q+LG L Sbjct: 143 KRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQNLGAPLD 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R +K +V+A S Sbjct: 203 TALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ LP + +PGY+ + +D G L+G A ++G ++ +IN Sbjct: 263 RLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIKRIINIK 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 333 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 98/174 (56%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 FP ALDI VR +R+G P+ A+ ++ + DP+ +EF V + GL L E+++RM Sbjct: 160 QQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALARMA 219 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L ++ F +SVQ + GGNL+E L NLS+++RDR +M KV+ALS E + +A I+ Sbjct: 220 ERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAVIL 279 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ T+P + + DP + G L+G +R MI+ V Sbjct: 280 TALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333 >gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 321 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ +EF+ + Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L NDPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 RIISIEI 321 >gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 321 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + G Sbjct: 139 VTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS Sbjct: 199 LRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L DPRG ++ + + IG + +R +IN Sbjct: 259 ESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIRKIIN 318 Query: 185 FDV 187 ++ Sbjct: 319 IEI 321 >gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 321 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 102/173 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F P+ALD+I R+++AG + + ++ + +DP+ EF++ ++ + G+ Sbjct: 142 RMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEINFGIPADA 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + ++ FF +++Q + GGNL+E + N++R++R+R + +V+ LS E + Sbjct: 202 ALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGR 261 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +AWI+ LPF + ++ +P +M+ L P G+MLL + M IG + ++ Sbjct: 262 LTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314 >gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 322 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G Sbjct: 140 ISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIRNIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] Length = 325 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 105/178 (58%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A+F D P ALD++ R++R+G ++ + ++ + P+ SEF ++ +LGL+ E+ Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + +P ++ FF+ + +Q + GGN++E L ++SR++R+R K +V+AL+ E + S Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A ++ LP + ++F + Y+++L +P G +L A ++G +++ ++ ++ Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIEL 325 >gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4] gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] Length = 325 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 288 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + P+ EF + + Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + M++G++ +R Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281 Query: 181 LMINFDV 187 ++ +V Sbjct: 282 KILRIEV 288 >gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 324 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP ALDI+ R ++AG DA+ + + P+ EF+ + + G Sbjct: 144 KRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEINYGKDTR 203 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P FST + VQ + GGNL+E L NL+RI+R R + +V+ S + Sbjct: 204 RALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQG 263 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++ +P + +Y +SP Y L + G+ LL +A MLIGI + +I + Sbjct: 264 RMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWISRLIRIE 323 Query: 187 V 187 V Sbjct: 324 V 324 >gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH] Length = 325 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 321 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F P+ALD+I R+++AG + ++ + +DPV EF+ ++ + G+S Sbjct: 141 RRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGVSPD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M R + ++ FF +++Q + GGNL+E ++ ++ +LR+R + +V+ LS E Sbjct: 201 AALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + +++ +P +M+ L P G+MLL + M G + ++ + Sbjct: 261 RLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45] gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45] Length = 321 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+A++++VRS+R G P S A++V+ + DP+ +EF + + G + Sbjct: 140 RKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V ++ T P Y + +++ P + A F+ + ++VMR+++N Sbjct: 260 AQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 322 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R A + P+A++++VRS+R G P S A+ ++ + +DP+ +EF + + G + Sbjct: 141 KQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ + M +Q++ F + +S+QSQ GGNL+E L L++++R R + +V+A++ E Sbjct: 201 TEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + PF + P Y + + P V A F+ I I+ M++M+N Sbjct: 261 AKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMKMMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 327 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+ Sbjct: 147 KRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P++++ FF + +Q + GGNL+E L ++ ++R+R + +V+ LS E Sbjct: 207 EALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWIIG LPF + + +P +++VL DP G ++ M+ G++ MR ++ Sbjct: 267 RLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRIVRIR 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 322 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESAYGRDVG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 327 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+ Sbjct: 147 KRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + +V+ LS E Sbjct: 207 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWIIG LPF + + +P +++VL DP G L+ M G++ MR ++ Sbjct: 267 RLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRIVRIR 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 325 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 105/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 321 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 100/180 (55%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A+F + P ALDII R+++AG P+ + + + DP+ EF+ + G L Sbjct: 142 RMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLNYGYDLRL 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS E++ Sbjct: 202 AILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESR 261 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 SAWI+ PF + + SP Y+ L DPRG ++ V + IG + ++ +I+ ++ Sbjct: 262 LSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIKKIISIEI 321 >gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 325 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P+A+D I RS RAG+PV++ + S P+ +EFR + LG+ Sbjct: 143 LQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKLGVP 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR R+ + KVQ+ + Sbjct: 203 LRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQSKTS 262 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C+ + Y SP + L NDP G +L A + +G+++ LM+ Sbjct: 263 EARASAKIVAALFPGCLGYM-YLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHLMV 321 Query: 184 N 184 Sbjct: 322 K 322 >gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 327 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 1/181 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF P+ALD++ R+++AG + ++ + DP+ EF +V+E + G+ + E Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206 Query: 68 SISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R+ ++ FF+ + +Q + GGNL+E L +++RI+R+R + ++ LS E Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA I+ ++PF V+ + +P Y+ VL DP G L + M +GI +M+ I Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 323 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF + P ALDI+ R+++AG P + + V + DP+ EFR + G+++ Sbjct: 143 KRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMNIK 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + +++ +P + T + VQ GGNL+E L ++ ++R R + KV+ + E Sbjct: 203 TAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ +PF +S ++ +P Y+ +L+ +P G L+ +A +++G+ MR +I D Sbjct: 263 RLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIRID 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 323 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + +LG Sbjct: 142 QKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMNLGTQA 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + + ++ T + +Q Q+GGNL+E + N++ +R+R +K +++ L+ + Sbjct: 202 EEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++IG LPF ++T++ SP Y+ L N G +++G+A +IG+M ++ ++N Sbjct: 262 GRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIKKIVNI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 322 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P AL+II +RAG A+AV+ + P+ EF RV+ LG S+ Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M +++ T + +Q Q+GGN++E L + +R+R +K +++AL+ + Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA II LP V+ L+ +P YM L+ +P G M+L +A ++GIM++R ++ + Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 326 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G++V +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 321 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + F +P Y+ L D RG L+ + + G + +R Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 NIINFEV 321 >gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 325 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + ++ VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 327 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KKR KF + ++L II S++AG A+ ++ + P+ E RV++ + Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + ++ T + +Q Q+GGNLSE L N+S +R+R +K ++Q Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + +++ SP YM L P G ++GV ++G ++++ Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320 Query: 181 LMINFDV 187 +I+ +V Sbjct: 321 KIIDIEV 327 >gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 322 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 103/186 (55%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKRTA+ + P+A++++VRS+R G P S A++++ + SDP+ +EF + + G L Sbjct: 141 KKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGREL 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L LS+++R R + +V+A++ E Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181 AK S + P + P Y ++ H AA F+++ ++VMR Sbjct: 261 AKWSGNFLSGFPLMALIGIQLIDPNYY----DEAMEHAFFIPAAITVGVFLVLNLIVMRG 316 Query: 182 MINFDV 187 ++N V Sbjct: 317 LVNIKV 322 >gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 321 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +I+F+V Sbjct: 315 KIISFEV 321 >gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 232 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 100/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + G Sbjct: 50 IADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLNYGYD 109 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ LS Sbjct: 110 MRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSA 169 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R +I+ Sbjct: 170 ESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIRKIIS 229 Query: 185 FDV 187 F+V Sbjct: 230 FEV 232 >gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47] Length = 321 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L Sbjct: 140 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E Sbjct: 200 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I Sbjct: 260 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11] gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11] Length = 322 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 103/182 (56%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G + Sbjct: 142 KRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESAYGRDVG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 325 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + +P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1] gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1] Length = 347 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L Sbjct: 166 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 225 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E Sbjct: 226 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 285 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I Sbjct: 286 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 345 Query: 186 DV 187 V Sbjct: 346 KV 347 >gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 323 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 91/147 (61%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F D P LD+I S+R G + ++A + G +P+R+E RRV + LGLS+ Sbjct: 142 QRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQLGLSI 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ Sbjct: 202 TQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSM 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152 + S+++IG+LPF ++ +++ +P YM Sbjct: 262 QRISSYVIGALPFALALIIFTINPTYM 288 >gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 311 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 100/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF +AL I+ S+RAG A+A I DP+ EF +V LG ++ Sbjct: 130 KQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVELGENI 189 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S++ + M +E+ +T +S+Q Q+GGNL++ L N+ +R+R ++ ++AL+ + Sbjct: 190 EKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIKALTAQ 249 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 SA +I LP V L+ + YM + P G+ LLGV+A ++G +++ + N Sbjct: 250 GDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIKKITNI 309 Query: 186 DV 187 ++ Sbjct: 310 EM 311 >gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] Length = 320 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H KR + + P+A++++VRS+R G P S+A++++ + DP+ SEF + + G Sbjct: 136 HKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAAYG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A+ Sbjct: 196 RDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAI 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EAK S + P ++ P Y + + + P + F+++ + VMR++ Sbjct: 256 TAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMRIL 315 Query: 183 INFDV 187 N V Sbjct: 316 TNIKV 320 >gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 321 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR +F P+A++++ R++R+G ++ + ++ + P+ FR ETQ+LG+ + Sbjct: 140 KKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQNLGVPV 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ MP + FF T +++Q Q GG+L+E L +S ++R+R + VQAL+ E Sbjct: 200 ESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ ++P + VY+ +P Y+ VL G ++ V ++G + ++ +I+ Sbjct: 260 GRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIKKIIDI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5] gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 100/180 (55%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + ++ P LD VRS+++G ++DAV + S+DP++S R+ LG+ Sbjct: 111 LYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLGV 170 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L +++S + E+ F+ + V + GGN SE L NL +++R+R+ ++ A++ Sbjct: 171 NLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAMT 230 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +AW++G+LP + T+PGYM + +D G +L A + G + + M+ Sbjct: 231 GETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRML 290 >gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 326 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 326 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens Pf0-1] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 98/178 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + ++ P LD VRS+++G ++DAV + S DP++ RV LG+SL Sbjct: 113 QRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLGVSL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + E+ F+ + V + GGN SE L NL R++R+R +++A++ E Sbjct: 173 PEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +AW++G LP ++ ++P Y+ + ND G M+L A +IG +++ M+ Sbjct: 233 TRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRML 290 >gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 326 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAMLFPGCLAYL-YMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 326 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 RRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + A+ ++ + SDP+ EFR + + G+SL Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P++++ +F + +Q + GGNL+E L +++ ++R+R + K++ LS E Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++G LPF + + +P ++ VL D G ++ M G++ MR +I Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 96/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR DFP+ LD+I R+++AG +DA+ + + P+ EF+ + + + Sbjct: 145 KRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +P Y+ L GH LL A M IG + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWISRIIKID 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 316 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F + P+A+ ++ RS+RAG ++ AV +I + +P+ F+ E Q LG+ + Sbjct: 135 KKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQKLGVRI 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ + + Q+ +FF TV + S+ GGNLSE L L+ LR R ++ +V+ ++ E Sbjct: 195 ADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAE 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + +Y PGY++V ++LG A ++G ++R ++N Sbjct: 255 GRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIRKIVNI 314 Query: 186 DV 187 + Sbjct: 315 SI 316 >gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 325 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + DP+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P+Q++ +F + +Q + GGNL+E L +S ++R+R + KV+ LS E Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 325 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL +++ Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E + SA Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ + +++VL DP G + G M+ G+ MR +I V Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325 >gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040] Length = 322 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 141 KKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V + P Y + +I+ P + + I VMR + N Sbjct: 261 AQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMRKLTNI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 323 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 99/176 (56%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F+ P LD++ RS++AG + + + + DP+ EF ++ + G+ + +++ + Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + +++FF + +Q + GGNL+E + +++ ++R+R KV+AL+ E S W Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ LPF + ++ F +P Y+ +L + GH+++ A M+IG MR ++ DV Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323 >gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512] Length = 317 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L Sbjct: 137 RRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + + G L+ A M IG +++ M+NF+ Sbjct: 257 RITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKMVNFE 316 >gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 292 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 99/178 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ + ++ P LD VRS++AG +SDAV V + +P+RS RV LG+ L Sbjct: 112 RRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQLGVPL 171 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++S + E+ F+ + + + GGN SE + NL +++R+ + +++A++ E Sbjct: 172 DDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLRAMTGE 231 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +AWI+G+LP + F +PGY+ + D G M+L A A +G +V+ M+ Sbjct: 232 TRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLWRMM 289 >gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 333 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 4/189 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178 ALS E + +A ++ +LP ++ +P + + D ++G LIG Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDS--MFIIGFVGLIVLYLIGFFT 324 Query: 179 MRLMINFDV 187 +R M++ V Sbjct: 325 IRRMVDLKV 333 >gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] Length = 317 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LR R +KAKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + L + G ++ V M IG +++ M+NF+ Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKMVNFE 316 >gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 319 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 2/187 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +R A P AL+IIVRS+ AG PV A+A++ + SDPV +EF + Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L ++I RM +V F+ + +Q + GGNL+ L + +R+R M+ K++A Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMVMR 180 S E +ASA I+ + PF ++ SP + +I++P LLG+ ++ IG +VMR Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGL-TVWVGIGNLVMR 312 Query: 181 LMINFDV 187 MI+ + Sbjct: 313 RMIDMKL 319 >gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619] gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619] Length = 293 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 102/183 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + ++ P LD VRS++AG ++DAV + S +P+RS RV Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++ Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A I+G+LP C+ +P Y+ + D G M+L +A A ++G +V+ Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287 Query: 181 LMI 183 M+ Sbjct: 288 RMM 290 >gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 327 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR P A D+I R++RAG S A+ ++ + ++P+ EFR V + + G++L Sbjct: 146 RKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYGVTL 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ + +P+ ++ +F + +Q + GGNL+E L +++ ++R R + KV+ LS E Sbjct: 206 NEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVLSAE 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+ LPF + + +P + +VL DP G ++ M++GI+ MR ++ Sbjct: 266 GRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRIVQI 325 Query: 186 DV 187 V Sbjct: 326 RV 327 >gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 336 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + P A+D++ ++ AG ++ A+ + + S+P+ E +V+ Q LGLS Sbjct: 155 KRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGLSQ 214 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ RM+ P +++ T I++Q ++GG+L+ L ++S +R+R +K +++ L+ + Sbjct: 215 EEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQ 274 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA+I+ ++PF ++ +++ + Y+ L G ++L VA A +++G +MR +I Sbjct: 275 GRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRIIAI 334 Query: 186 DV 187 V Sbjct: 335 KV 336 >gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 333 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 89/151 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 ALS E + +A ++ +LP ++ +P + Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAF 297 >gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 327 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 98/182 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR V+AG+P ++A +I P+ E + + L Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLSL +++ +PL E FF+ ++ + + GG LS+ L LS LR+R+ + K++A Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ L +YF SP L++DP G+ +L A +L G+ + Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320 Query: 182 MI 183 MI Sbjct: 321 MI 322 >gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 322 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR + + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + S P + P Y + +++ + AAF+ + ++VMR Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 ILVNIKV 322 >gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 102/180 (56%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R F P+A++++ R++RAG ++ + V+ + P+ EF RV E Q+LG+ L E Sbjct: 140 RLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQNLGIPLEE 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M +P ++ FF T +++Q Q GG+L+E L + I+R+R + +V+AL+ E + Sbjct: 200 ALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGR 259 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 S ++ +LP + ++ +T P Y+ +L D G + A MLIG ++ +++ V Sbjct: 260 LSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIKKIVDIKV 319 >gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315 >gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] Length = 325 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + + ++ + DP+ EFR + + G+ L+ Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF ++ + +++VL DP G ++G M G++ +R ++ Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 329 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR RAG+PVS+A ++ P+ EF V + L Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ + +PL E FF ++ + + GG LS+ L L+ LR+R+ + K++A Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ SL +Y SP L+ND G+ +L A +L+G+ + Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322 Query: 182 MIN 184 MI Sbjct: 323 MIK 325 >gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 322 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S AVA++ + DP+ +E + + G + Sbjct: 141 KKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ +M M +Q++ F + +++Q+ GGNL+E L LS+++R R + +V+A++ E Sbjct: 201 GESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P ++ P Y + + V AAF+++ ++VMR ++N Sbjct: 261 AKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVNI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] Length = 323 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P+A++++VRS++ G P S A+A + +S DP+ +EF + + G + Sbjct: 142 KKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGEI 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ M + +Q++ F + V+ +Q++ GGNL+E L L+ ++R R + KV A++ E Sbjct: 202 TDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAE 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + + P + T P + + ++ + V A ++I I+ MR+M N Sbjct: 262 AKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTNI 321 Query: 186 DV 187 V Sbjct: 322 KV 323 >gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 323 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P+AL+++ R++R+G +S ++V+V + P+ +EF E Q+LG+ + Sbjct: 143 RRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQNLGIPIG 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M+ MP ++ FF T + +Q Q GG+L+E L + I+R R + +VQAL+ E Sbjct: 203 EALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S ++ +LP + VY+ +P Y+ +L D G ++ ++G + ++ ++N Sbjct: 263 RISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIKKIVNIK 322 Query: 187 V 187 + Sbjct: 323 I 323 >gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 319 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KR KF D +AL I+ S+RAG A+ + + P+ +EF R ++ Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+++ M + ++ T +++Q Q+GGNL+E L N+ + +R MK +++ Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ LP + ++ +P Y+ +L P G +L+G A LIGIM+++ Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312 Query: 181 LMINFDV 187 +IN ++ Sbjct: 313 KVINIEL 319 >gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 105/180 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L Sbjct: 137 RRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + G +++ V A M IG +++ M+NF+ Sbjct: 257 RITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKMVNFE 316 >gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] Length = 322 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LSRILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179 +S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + + Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMIS-LFIGTLWI 314 Query: 180 RLMINFDV 187 R ++N +V Sbjct: 315 RKIVNIEV 322 >gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 335 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 104/176 (59%), Gaps = 4/176 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F D P LD+I S+R G + ++A + +P R+E RRV + LGLS+++++ Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ + S+ Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMIN 184 ++IG+LPF ++ +++ +P YM L G +L AF+ ++G +++R +++ Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQP--GLILCIPIGAFISSVVGFLIIRKIVD 332 >gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++G M +G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLL 315 >gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 104/180 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F P AL++I R ++AG PV A+A++ + DP+ +EF + + G L Sbjct: 140 KRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E Sbjct: 200 VSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA+I+ ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 260 GRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 319 >gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 310 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 95/182 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR A+F + L ++ +RAG + A+ +S P E RRVI LG Sbjct: 127 LAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETSLGR 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L S++ M ++ + + I + ++GGNL+E L ++ +R+R +K ++AL+ Sbjct: 187 DLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALA 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA+I+ ++P + ++ +PGYM+ + P G ++ + FM IG + MR +I Sbjct: 247 AEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMRKII 306 Query: 184 NF 185 + Sbjct: 307 DL 308 >gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 331 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR F P AL++ R++RAG + + ++ + + P+ EF RV E Q+ Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M +P +V FF T + +Q Q GG+L E L +S ++R R +K +V Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMVM 179 AL+ E + S ++ ++P + ++ T+ Y+ L DP G +L AA ++G + + Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323 Query: 180 RLMINFDV 187 R +++ V Sbjct: 324 RKIVDIKV 331 >gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 322 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K S + P + P Y N + + V F+++ ++VMR ++N Sbjct: 262 KWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMRALVNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + +P+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315 >gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4] Length = 283 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 100/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L K+R KF+ P+AL++I S+++G VS+A+ + + P++ EF+ + Q L Sbjct: 98 QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P +E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771] Length = 317 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + ++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E Sbjct: 197 DALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + + G ++ A M +G +++ M+NF+ Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKMVNFE 316 >gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54] gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54] Length = 317 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 99/181 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F + FP+ALD++ +++AG + ++ ++ + P+ EF V+E + G S+ Sbjct: 136 RQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKSI 195 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + E+ +F T + VQ + GGNL E L +S I+R + + +V+ALS E Sbjct: 196 DSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K SA I+ +LPFC++ V + Y+ +LI DP G L+ A M G ++ + Sbjct: 256 GKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQL 315 Query: 186 D 186 D Sbjct: 316 D 316 >gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 322 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS+ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179 +S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + + Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVS-LFIGTIWI 314 Query: 180 RLMINFDV 187 R ++N +V Sbjct: 315 RKIVNIEV 322 >gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P ++ P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 310 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 95/185 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ M ++ + S I + ++GGNL++ L +R+R +K ++ Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++PF + ++ SP YMN + + P G ++GV+ M IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303 Query: 181 LMINF 185 +I+ Sbjct: 304 KIIDL 308 >gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 325 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDAV ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NLSR++R R + +V+ LS E Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L GH LL A M +G + + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 95/161 (59%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+AL+++ R++R+G ++ + V+V + DP+ EF E Q+LG+ + +++ + Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P + FF+T +++Q Q GG+L+E L + I+R+R + +VQAL+ E + S ++ Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +LP + ++Y+ +P YM +L + G ++ A ++G Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311 >gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 322 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 99/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P + A+A++ + +DP+ +EF + + G + Sbjct: 141 KKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +ES+ M Q++ F S +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 TESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P ++ P Y + + V F+ I ++ M++M+N Sbjct: 261 AKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] Length = 322 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 316 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 97/180 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+F + L ++ +RAG V A+ + ++S+P +EF RV+ Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +S++ + M ++ ++ + I + ++GG+L+E + +R+R +K V+ Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA I+ +LP + L+ +P Y L P G M+LG+A M IG + +R Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309 >gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] Length = 292 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 8/175 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIE---TQHLGLSLSE 67 FL FP A+D RS++AG+PV A+ I+G++ D EF RRV++ +GL E Sbjct: 116 FLSRFPEAVDNFTRSIQAGIPVDRALK-ILGEAYD---DEFGRRVLKLCREMKVGLPFRE 171 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + +V FF V+++ + G LS LA+LS +LR+R+ + K++AL+ E++ Sbjct: 172 ALGNFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESR 231 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ASA ++ LP + L F +P + L+NDP G ++ G A A ML G ++++ M Sbjct: 232 ASARVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRM 286 >gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RT F++ + + ++ S+RAG + + ++ ++ P+ EFRRV+ LG+ Sbjct: 146 RRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGIPT 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++S ++R +P +++ T I+VQ ++GGNL++ L + +R+R +K +++ L+ + Sbjct: 206 QEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLTAQ 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S +II +LP ++ L+ +PGY+ ++ P M +G + +G + MR ++N Sbjct: 266 QSISGYIISALPVGLALLLMVINPGYVMGMMRWPWICMPIG-GVVLIFLGFIAMRKIVNI 324 Query: 186 DV 187 +V Sbjct: 325 EV 326 >gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 317 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 104/179 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L + Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+++S E + Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A + PF + ++ +P Y + + + G +++ M IG +++ M+NF+ Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316 >gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 99/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L Sbjct: 220 RQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVNIPL 279 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ + Sbjct: 280 EDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 339 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+GSLP + L+ +P Y+ L+ P G MLLG + G++V+R +I Sbjct: 340 GRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRALIRV 399 Query: 186 DV 187 D+ Sbjct: 400 DI 401 >gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 322 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 105/188 (55%), Gaps = 12/188 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P++++++VRS+R G P+ A+ ++ +S DP+ +EF + + G + Sbjct: 141 KKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAAYGREV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------VM 179 A+ S + + P + P Y + +++ H L + A F ++G+M VM Sbjct: 261 AQWSGKFLSAFPLGALLFILVKDPNYYDGVMD----HELF-IPACF-VVGVMLTMNLFVM 314 Query: 180 RLMINFDV 187 R++ N V Sbjct: 315 RMLTNIKV 322 >gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 95/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 141 KKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECSYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P P Y + +++ P + + I VMR + + Sbjct: 261 AQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMRKLTDI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + + +Q Q GGNL+E LA L++++R R + +V Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ EAK S + P FC+ + P Y + +++ P + + ++VM Sbjct: 256 AITAEAKWSGKFLSGFPVFCL-VFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVM 314 Query: 180 RLMINFDV 187 R++ N V Sbjct: 315 RILTNIKV 322 >gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +S+Q Q GGNL++ LA L++++R R + +V A++ E Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---GHMLLGVAAAFML-IGIMVMRL 181 AK S + P + P Y + ++++P +G FML + ++VMR+ Sbjct: 261 AKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVG----FMLTLNLIVMRI 316 Query: 182 MINFDV 187 + N V Sbjct: 317 LTNIKV 322 >gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 322 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P + AVA++ + DP+ SE + + G + Sbjct: 141 KKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P ++ P Y + + V A F++ + VMR+++N Sbjct: 261 AKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMRMLVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 320 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR A+F +AL I+ S+RAG A+ ++ + P+ EF R + +LG + Sbjct: 139 QKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMNLGTAT 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + + +++ T + +Q Q+GGNLS+ L +S +R+R +K +++ L+ + Sbjct: 199 EEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S I+G+LP + ++ +PGY+ +L +D G +L+ LIG+ +++ +++ Sbjct: 259 GRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIKKIVDI 318 Query: 186 DV 187 V Sbjct: 319 KV 320 >gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 321 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 99/171 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ SEF + + G L +++ + Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+Q+ GGNL E L L+ +R+R ++ KV+A++ E + SA+I+ Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++P + + PG+ + + +P+ LLG + ++++G ++M M NF Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNF 319 >gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] Length = 325 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR FP+ALD++ R+++AG SDA+ + + P+ EF+ + + + Sbjct: 145 KRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANINYTKDVK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + +LSR++R+R + +V+ LS E Sbjct: 205 RALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +P Y+ L G LL A M IG + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ SEF + + G + Sbjct: 141 KKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + + LQ++ F + +++Q Q GGNL+E LA L+ ++R R + +V+A++ E Sbjct: 201 GEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + + P + P Y + +++ P A F+ + ++VMR +++ Sbjct: 261 AQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMRKLVDI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 96/180 (53%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AK + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + E Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M + +Q++ F S +++Q Q GGNL+E LA L+ ++R R + KV+A++ EAK Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 S + + P + P Y + +++ P + + ++VMR++ + V Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322 >gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I] gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 100/182 (54%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G + Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC++ ++ P Y + +++ P + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLAGILV-KDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 309 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 100/175 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R +F P LD++ +RAG ++ Q P+ ++V+ LGL L Sbjct: 128 QRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISLGLDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++R V + ++ T I +Q ++GGNL++ L N++R++RDR+++ A+++AL+ + Sbjct: 188 EDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKALTSQ 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + I+ LP ++ ++ SPGY++ L + +G ++LG A F IGI+V++ Sbjct: 248 GRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQ 302 >gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] Length = 325 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 8/185 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR----RVIETQHLG 62 KR FP+ LD+I R+++AG +DA+ + + P+ EF+ + T+ + Sbjct: 145 KRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+L I R+ P F++ + VQ + GGNL+E + NL+R++R R + +V+ L Sbjct: 205 LALLGFIQRV----PSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+ LPF + ++Y +P Y+ L G LL M+IG + + Sbjct: 261 SAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWISRI 320 Query: 183 INFDV 187 I DV Sbjct: 321 IKIDV 325 >gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 325 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 98/172 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL Sbjct: 144 RRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVSL 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 204 HDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + SAWI+G LPF + ++ + +++VL DP G ++G M G++ Sbjct: 264 GRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLL 315 >gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 321 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P + A+ ++ + DP+ +EF + + G + Sbjct: 140 KKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P + P Y + +++ P + + + ++VMR ++N Sbjct: 260 AQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] Length = 322 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 97/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + A++++ + +DP+ +EF + + G + Sbjct: 142 KRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ EA Sbjct: 202 EALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K S + P + P Y + + P + F++ + VMR ++N Sbjct: 262 KWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 325 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 145 KRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 325 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 320 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 101/181 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R F + + II S++AG A+AV+ ++SDP EF+++++ LG+S Sbjct: 139 KDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMSLGISE 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + +++ VI +Q +GGNLSE L N+S +R+R+ +K++++ L+ + Sbjct: 199 EDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELKTLTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S I+ +P + +Y + Y+ +L G +++ A +G++++R +IN Sbjct: 259 GRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIRKIINI 318 Query: 186 D 186 D Sbjct: 319 D 319 >gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 301 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 99/171 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ +EF + + G L +++ + Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNSLFD 188 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E + SA+I+ Sbjct: 189 RVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAYILT 248 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 249 AIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 299 >gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 320 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 86/148 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P ++A+A++ + DP+ SEF + + G + Sbjct: 139 KKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRDI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V A++ E Sbjct: 199 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153 AK S + + P ++ P Y + Sbjct: 259 AKWSGKFLSAFPIVALIVIKLGDPHYYD 286 >gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 320 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 102/184 (55%), Gaps = 4/184 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P+A++++VRS+R G P + A++++ + DP+ SEF + + G + Sbjct: 139 KKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRDI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 199 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183 AK S + + P ++ P Y + ++ P + G A F+ + ++VMR + Sbjct: 259 AKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHP--LFIPGCIAVVLFLSLNLIVMRKLT 316 Query: 184 NFDV 187 + V Sbjct: 317 DIKV 320 >gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 322 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 96/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ +E + + G + Sbjct: 141 KKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P + P Y + ++ V AF+++ + VMR + N Sbjct: 261 AKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMRHLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035] gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035] Length = 322 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 85/153 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 K S + + P + P Y + + P Sbjct: 262 KWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHP 294 >gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 319 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R D P D++ R++ +G +S A ++ Q P+ EF+ + Q+LGL Sbjct: 142 QRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLGLPYE 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R + E+ F+ + VQ Q GG+ S+ L NL+ +R+R + KV+A++ E Sbjct: 202 ITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAITSEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A AW++ +LPF +Y Y +VL+ P ++ V+ A +GI +R ++ + Sbjct: 262 RAQAWVLSALPFVSFGGIYLLDRDYASVLLERPNVMAIMAVSIA---LGIAWIRQIVCIE 318 >gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 279 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R AK ++ P+AL+++ S+R+G ++ A+ ++ ++ P E V+ Q LG Sbjct: 95 YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++ + + L++V+ + I++ +GGNLSE L L+ LR + M+ K++AL Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++G LP + +++ P M L + G ++ V A +++G + ++ + Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274 Query: 183 INFDV 187 + DV Sbjct: 275 VTIDV 279 >gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 283 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L K+R KF+ P+AL++I S+++G VS A+ + + P++ EF+ Q L Sbjct: 98 KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614] Length = 326 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 100/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F P L ++ S+ AGL ++ + + + +DPV +EFRR + LG+ L Sbjct: 146 RRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETRLGVPLE 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + ++++ I +Q Q+GGNL+E L ++ +R+R+ ++ +V ALS E Sbjct: 206 DALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++GSLP T + + Y+ L DPRG +LL AA ++ +G M ++ + Sbjct: 266 RLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMSRLVRVE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 323 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + LG Sbjct: 142 QKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMSLGTPT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + + ++ T + +Q Q+GGNL+E L N++ +R+R +K ++++++ + Sbjct: 202 EEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIRSITAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +IG LPF ++ L+ SP Y+ L N G +++ A +IG++ ++ +++ Sbjct: 262 GRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIKKIVDI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] Length = 314 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 88/162 (54%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++L ++ S+RAG + A+A + ++ P EF R+I +G L+ ++ Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M Q+ + + I++ ++GGNL+E L + +R+R ++ +VQAL+ E K SA+++ Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +LPF + ++ ++P Y+ VL P G ++ + IG Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIG 302 >gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 322 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + Sbjct: 142 KRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S + + P P Y + +++ P + + + VMR++ N Sbjct: 262 QWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMRVLTNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 322 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F + P+A++++VRS+R G P S A+ ++ + DP+ SE + + G + Sbjct: 141 KKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRDI 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVMRL 181 AK S + P ++ P Y + + P + LG F++ VM+ Sbjct: 261 AKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLG----FLIANYFVMKA 316 Query: 182 MINFDV 187 + N V Sbjct: 317 LTNIKV 322 >gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 310 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 93/182 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR A F + L ++ +RAG + A+ +S P E RRVI LG Sbjct: 127 LAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLGR 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ M ++ + S I + ++GGNL++ L ++ +R+R +K ++AL+ Sbjct: 187 DLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKALA 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA+I+ ++PF + ++ SP YMN + P G ++ + M +G + MR +I Sbjct: 247 AEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKII 306 Query: 184 NF 185 + Sbjct: 307 DL 308 >gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 332 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 103/191 (53%), Gaps = 8/191 (4%) Query: 5 IKKRTAKFLDDFPNAL-DIIV---RSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R A+ + F N L D+I ++R G + ++ ++ DP +EFRRV++ Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R +P ++ T +S+Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176 L+ + + S+WII LP ++ + +P YM L P+ + V + FM+ +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] Length = 323 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 104/182 (57%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R +F++ + + ++ S+RAG + + ++ +S+ P+ EFRRV+ LG+ L Sbjct: 143 RHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLGVPL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ +P +++ T I++ ++GGNL++ L + +R+R +K +++ L+ + Sbjct: 203 QDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQ 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S +II LP ++ L++ +P Y+ L+ P M +G A M++G +VMR ++ Sbjct: 263 QSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPWICMPIG-AVICMVLGFVVMRRIVAI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25] gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 294 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 96/178 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + ++ P LD VRS+++G ++DAV V +P+R RV +G+SL Sbjct: 114 QQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMGVSL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+S + E F+ + V + GGN SE L NL +++R+R+ +++A++ E Sbjct: 174 PDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A+++G LP + +PGY+ + +D G ++L A A L G +M M+ Sbjct: 234 TRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRML 291 >gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 329 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H +R F +AL I+ ++RAG A+ + + P+ +EF + Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ES+ + + ++ T + +Q Q+GGNL++ L N+SR +RDR +K +++ Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++ +PGYM + +P G LL AA L G+ V++ Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322 Query: 181 LMINFDV 187 +++ DV Sbjct: 323 KIVDIDV 329 >gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] Length = 320 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 94/174 (54%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P+A+D++VRS+R G P S A+ + + DP+ +E + + G + E++ M Sbjct: 147 EQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETAYGRDMGETLKAMA 206 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + Q++ F + +++Q GGNL+E L LS+++R R + +V+A++ EAK S ++ Sbjct: 207 ERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAKWSGNLL 266 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P + P Y + ++ P V AAF+++ ++VMR + N V Sbjct: 267 SAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMRALTNIKV 320 >gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 324 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 98/170 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F P ALD++ R+++AG + ++ + P+ EF + ++ + G+ + Sbjct: 143 RKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEINYGMDV 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S + + ++ FF +++Q + GGNL+E +A ++ ++R+R + K++ LS E Sbjct: 203 DRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SA+I+ +LPF ++ ++Y + Y+++L G ++ AA M+IG Sbjct: 263 GRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312 >gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira crunogena XCL-2] Length = 315 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + FP LD IVR++++G + A+++I + P+ E + V LG+S+ Sbjct: 134 KQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLGISM 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + + E FF + +Q + GG L+ L LSR++R R+ +AK++ L+ E Sbjct: 194 RDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAE 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ +A +G P YF P M +NDP G +L ++ M+ G ++++ M+ Sbjct: 254 SRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSML 311 >gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894] Length = 67 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/67 (65%), Positives = 55/67 (82%) Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++ +M IGI VMR Sbjct: 1 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 61 NMVNFDI 67 >gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 309 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 99/185 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR KF D ++L ++ +RAG + AV + Q+ P EF R++ Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++++ + M ++ S+ S I + ++GG+L++ L + R +R+R ++ +V+ Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA+++ +LP + ++ SP Y+ + P G ++ M +G + ++ Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302 Query: 181 LMINF 185 +++F Sbjct: 303 KIVSF 307 >gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] Length = 321 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P A++++VRS+R G P S A+A++ + DP+ +E + + G + Sbjct: 140 KKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRDM 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + Q++ F + +++Q GGNL+E L L++++R R + +V A++ E Sbjct: 200 GETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S ++ + P + P Y + ++ P + + AF+++ ++VMR +++ Sbjct: 260 AKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVDI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 301 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 + L +R +F FP+AL++++ +V AG + AV+ VGQ+ D V EF+ + + Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVS-FVGQNLDNEVGREFKNMGDRLK 173 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + + R + P E FF+ I GG L LA L R+L D + M+ K Sbjct: 174 LGESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKM 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA ++ ++P + ++Y +P +N +++DP+G +L L+G+ ++ Sbjct: 234 AMTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVW 293 Query: 181 LMIN 184 L++ Sbjct: 294 LLVK 297 >gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 323 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF + P+ L+++V +RAG A+ + + P+ EFRRV++ LG+ + Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++R +P ++ T I+VQ ++GGNL+E L +S +R+R +K +++ L+ + Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180 S + +P V ++Y + YM N P G++ L AA ++ G +VM Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316 Query: 181 LMINFDV 187 + + +V Sbjct: 317 KIGDIEV 323 >gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 317 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P+A+D IVRS++ G V A + P+ ++FR + E +GL Sbjct: 136 RREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGLPFE 195 Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 I R P L +V +Q + GG L++ LA L+ +R R + + +V+A + E Sbjct: 196 TVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +A+I+G LP + + + P YM V + P G LL V G +VMR M+ Sbjct: 256 GRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAMLRV 315 Query: 186 DV 187 V Sbjct: 316 KV 317 >gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 300 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 99/182 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + ++P+ EF+ + + L Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P + ++ + +P ++ ++NDP+G +L LIG+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 300 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 99/182 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+KKR F + FP+AL+I++ ++ AG + A++ + +DP+ EF+ + + L Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R + P E FF+ + GG L LA L R+L D + + K A Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N +++DP G ++L +G++++ L Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 325 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 81/147 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F D + + ++ ++R G + ++ + P+ EFRRV++ LG + Sbjct: 140 KKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVGLGRTT 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ ++R MP +++ T +++Q ++GGNL++ L + +R+R +K ++Q L+ + Sbjct: 200 EEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQTLTAQ 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152 + S W+I LP ++ + +P YM Sbjct: 260 GRISGWVITGLPIGLAIFITMINPEYM 286 >gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 660 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F D P+AL ++ S+R+G V+ +V + G P+ E R + Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ + M +++ + I +Q ++GGNLSE + + +R+R ++ +++ Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP L+ + P YM L P G ++ +A + +G + + Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653 Query: 181 LMINFDV 187 ++ +V Sbjct: 654 KVVKVEV 660 >gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 283 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L ++R +F+ P+AL++I S++AG V++A+ + + P++ EF+ + Q L Sbjct: 98 RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ + + +P E + + +GGNL+E L LS LR + M+ K+ + Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + +Y P M ++ +P G ++ V++ + G M ++ Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277 Query: 182 MINFDV 187 +I DV Sbjct: 278 IITIDV 283 >gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] Length = 325 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 92/177 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A D++ R++RAG A+ + + P+ SEF V + G+ + E+++ Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R +P++++ F + +Q + GGNL+E L N+ ++R R + K++ LS E + Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ +P + L+YF +P ++ L P G LL A +G++ +R ++ V Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325 >gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 329 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R F + + + ++ S+R+G + ++ ++ ++ P+ EFRRV++ LGLSL + Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++R +P ++ + I++Q+++GGNL+E L ++ +R+R +K +++ L+ +A+ Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183 S +++ LP ++ ++ +P YM L+ P + V +A M+I G ++ ++ Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325 Query: 184 NFDV 187 N ++ Sbjct: 326 NIEI 329 >gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 282 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L N+P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] Length = 326 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 T + P A+D I R RAG+P A + + E R + LG+ L + Sbjct: 148 TEELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQV 207 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + +PL E FF+ ++ + + GG L++ L L+ LR+R + KVQA + EA+A Sbjct: 208 LQESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARA 267 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S I+ L V Y +P L+ DP G +LG AAA + G+ V LM+ Sbjct: 268 SIKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323 >gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] Length = 320 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G + Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179 K S + + P ++ P Y + + R H L+GV F+ + + VM Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGV---FLALNLFVM 312 Query: 180 RLMINFDV 187 R++ + V Sbjct: 313 RILTDIKV 320 >gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51] gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51] Length = 293 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 97/178 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ P LD VRS++AG ++DAV + S +P+R+ RV LG+ L Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++A++ E Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A I+G+LP + +P Y+ + D G ++L +A A ++G +V+ M+ Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMM 290 >gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 281 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 KH K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L Sbjct: 96 KHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVKL 155 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L E++ M R + ++ ++ QLGGN++E +S ++R+R ++ K+ A Sbjct: 156 GVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKIDA 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K WI+ ++P + ++ + P M +++ G +L+ + A ++GI+++R Sbjct: 216 LTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIRR 275 Query: 182 MINFDV 187 ++N D+ Sbjct: 276 IVNIDI 281 >gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 302 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 2/182 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61 +L++KR F + FP+AL+I++ +V +G + A+A VGQS D + EFR + E L Sbjct: 118 YLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAY-VGQSLDNQIGLEFRDMGERLKL 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + P FF I GG L +A L R+L D + + K A Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ SLPF L+ + SP ++ ++ DP G +L +G+ ++ L Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296 Query: 182 MI 183 +I Sbjct: 297 LI 298 >gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CMR15] Length = 325 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ + Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMG 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E Sbjct: 205 DALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++ Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324 Query: 187 V 187 + Sbjct: 325 I 325 >gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 325 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 96/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ ++ Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMN 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E Sbjct: 205 DALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++ Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324 Query: 187 V 187 + Sbjct: 325 I 325 >gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 320 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G + Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179 K S + + P ++ P Y + + R H L+G+ F+ + + VM Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGI---FLALNLFVM 312 Query: 180 RLMINFDV 187 R++ + V Sbjct: 313 RVLTDIKV 320 >gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3] gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3] Length = 308 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 94/176 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ +F FP ++ I R+V AG+ V A+A + + EF + + +G+SL Sbjct: 127 QQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIGISLK 186 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P FFS + + + GG L E L +LSR L + +K K+++L+ E Sbjct: 187 QALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSLTAEP 246 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A ++ LP C+ +++YF SP VL + P G+ +L M +G+ ++ ++ Sbjct: 247 RMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302 >gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 622 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615 Query: 181 LMIN 184 +++ Sbjct: 616 KVVS 619 >gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 623 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616 Query: 181 LMIN 184 +++ Sbjct: 617 KVVS 620 >gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] Length = 325 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 94/172 (54%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A D+I R++RAG + A+ + + PV E V + G+S++++++ ++ Sbjct: 154 LPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGLIDR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ + Sbjct: 214 VPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILTA 273 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 274 LPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 294 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 93/179 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F P AL II +R+G A+A + +P+ E +RVI + G L Sbjct: 113 KKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRKL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ + E+ ++ +++Q + GGNL+E + ++ + DR N++ +++ L+ + Sbjct: 173 EESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTTQ 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S +IG LP + ++ + SP YMN G ++L V+ G ++++ ++N Sbjct: 233 GRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291 >gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 652 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 96/172 (55%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +L ++ S+R+G + A+ I + DP+ EF R + +G +++++ RM Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 M + + I +Q ++GGNL+E L +R LR+R+++ +V+ALS E + SA+I+ + Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP + + + + GY+++L P G M+L ++ GI MR ++ +V Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652 >gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 332 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 99/185 (53%), Gaps = 4/185 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F + + + ++ ++R G + ++ ++ P +EFRRV++ LG S Sbjct: 148 QRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVGLGRSTE 207 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ ++R MP ++ T +++Q ++GGNL++ L + +R+R +K ++ L+ + Sbjct: 208 EALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEISTLTAQG 267 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRLM 182 + S+WII LP ++ + +P YM L P+ + VA+ FM+ +G ++ + Sbjct: 268 RISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGYFAIQKI 327 Query: 183 INFDV 187 I+ +V Sbjct: 328 IDIEV 332 >gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 325 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 94/173 (54%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++ Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645] gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645] Length = 310 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 82/160 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R F D FP+AL++I R+VRAG A+ ++ S DP+ EFRR + +GLS Sbjct: 129 NRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVGLSA 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M + L +V F+T ISV + GG L E L L+ ++RDR ++++++ Sbjct: 189 PKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSITSS 248 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 + SA II L + P Y + P G LL Sbjct: 249 GRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLL 288 >gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] Length = 325 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 94/173 (54%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++ Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 314 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 4/190 (2%) Query: 2 KHLIKKRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 K +K RTAK +F LD ++ S+RAG A+ + P++ E R++ Sbjct: 125 KMWVKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILN 184 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + S++ M ++ + + + + + GGNL+E + +++++RDR ++ Sbjct: 185 ENRLGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIRE 244 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 KV A + E + S++I+ SLP ++ F +PGY++ L + G L+G + I + Sbjct: 245 KVHAYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFL 304 Query: 178 VMRLMINFDV 187 MR++++ V Sbjct: 305 WMRIIVDIKV 314 >gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 89/161 (55%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG+ ++ A +V +S P+ EF ++ Q LG++L +S++ + R +P + + Sbjct: 1 MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + ++ GG L+EAL S +R R M+ K+ AL+ + K AW++G LP + ++ Sbjct: 61 AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P M+ L + G L V A ++G++++R ++ DV Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161 >gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 302 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIKKR +F FP+AL+I++ +V AG V +++ + + V F+ + E LG Sbjct: 119 LIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLGE 178 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R ++ P FF I GG L +A L R+L D + + K A++ Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAMT 238 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA I+ SLPF ++ F SP +N ++ DP G +L +G+ ++ L+I Sbjct: 239 SEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLLI 298 >gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 272 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 101/185 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R +F P AL ++ ++RAG+ ++ + +V QS P+ EF ++ Q LG Sbjct: 88 QLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQRLG 147 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + MP S + + SQ GGNL+EAL ++++ LR R ++AK+QAL Sbjct: 148 VPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQAL 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + AWI+G+LP + ++ P M +L + P G +L + G++++R + Sbjct: 208 TSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIRRI 267 Query: 183 INFDV 187 + ++ Sbjct: 268 VRIEL 272 >gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 316 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P+ALD++ R + G P++ + + DP+ +EFR + + G SL+ Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R + +++ + S + +Q GGNL L L+R++R R M+ +V A+S E Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ ++P + T+P Y + +DP + G A +L +++R +++F Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315 Query: 187 V 187 V Sbjct: 316 V 316 >gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 311 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 1/180 (0%) Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L++ R + D F L + R+V AG+ V A+A I + EF + + +G Sbjct: 127 LMRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIG 186 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++++ +P FFS + + + GG L E L +LSR + D +K K+++L Sbjct: 187 IGLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSL 246 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A I+ SLP + ++YF +P L PRGH++LG M +G+ ++ L+ Sbjct: 247 TAEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLL 306 >gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 327 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR D +A+ +I S++AG AV ++ + + P+ EF ++ + + G + Sbjct: 145 IKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVNFGTT 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ +V + ++ T + +Q Q+GGNLSE L N+S +R+R +K +V+ ++ Sbjct: 205 TEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVKTVTA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + S II +LP + +++ + ++ VL DP G ++LG + +IGI + +++ Sbjct: 265 QGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFISRIVS 324 Query: 185 FDV 187 +V Sbjct: 325 IEV 327 >gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1] gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 314 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313 >gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649] gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649] Length = 654 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF P+ L ++ ++ +G ++ A+ + S+ P EF R + Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +S+++ M M + + + + I +Q +GGNL++ L + LR+R+++K +V Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SA+I+ LP + + +++P Y ++L G ++L + M+IG + MR Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647 Query: 181 LMINFDV 187 +I +V Sbjct: 648 KVIQIEV 654 >gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 94/180 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR F FP+AL+I++ +V AG + A + + V EF+ + + LG Sbjct: 117 LQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLGE 176 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + R + P E FF+ I GG L LA L RIL D + +++K A++ Sbjct: 177 NAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAMT 236 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA ++ ++P + +V P +++ ++NDP+G M+L ++G+ V+ L++ Sbjct: 237 SEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLLV 296 >gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp. BTAi1] gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium sp. BTAi1] Length = 329 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 1/159 (0%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+T + F+D FP+A+D + R +RAGLP++ A+ + S PV F + + +G+ Sbjct: 145 QKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELRIGVP 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E++ R + L + FF+ +++Q GGNL+ L +LS I+R R+ + K +A + Sbjct: 205 LEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAKAATG 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 E + +A+ +G++P + + P Y+ L DPRGH+ Sbjct: 265 EIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHL 303 >gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 314 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313 >gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] Length = 323 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 97/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P+++D++ R++RAG V+ A+ V+ Q +PV SEF V Q+ GL Sbjct: 143 QRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQNFGLPFR 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ +P ++ F T + VQ + GGNL+E L + ++R+R ++ +V+ + + Sbjct: 203 DAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVKTKTAQG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + I+ LP + L+ +P Y L DP G +L A + +G + ++ + Sbjct: 263 RLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFINKIVKIE 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 302 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+KKR +F FP+AL+I++ +V AG + +++ + + V + F+ + E LG Sbjct: 119 LLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLGE 178 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R ++ P FF I GG L +A L R+L D + + K A++ Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMT 238 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA I+ SLPF + F SP +N ++ DP G +L +G+ ++ L+I Sbjct: 239 SEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLLI 298 >gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans C54] Length = 281 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 92/176 (52%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL ++ ++RAG+ + A+ +V Q P+ EF ++ Q LG+ E+++R Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + M + + + Q GGNL+EAL ++++ L R ++A+++ L+ + + AW Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP + + P M L + P G +L V G++++R ++ D+ Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281 >gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 282 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +KR D P+AL ++ ++RAG A+ +V +S P+ EF ++ L Sbjct: 97 KKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ M + +P+ + + I++ ++GGNL+E L +++R LR++ M+ K++A Sbjct: 157 GVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++ P M L + P G L V A L+G + Sbjct: 217 LTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] Length = 294 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 92/171 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P LD VRS+++G ++DAV + ++ P++ R+ LG+SL ++ Sbjct: 121 IEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARDF 180 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E F+ + V + GGN SE + NL R++RDR+ +++A++ E + +A + Sbjct: 181 AELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTALV 240 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +G LP ++ +P Y+ + ND G +LL +A A L+G +++ M+ Sbjct: 241 LGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRML 291 >gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 282 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 94/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P+AL ++ S+RAG+ S A+ V+V P+ E V+ QH+G+ Sbjct: 101 RRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMGVRA 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + +P+ + F + +++ ++GGNL+E LA L+ LR R M+ KV+AL+ + Sbjct: 161 DEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K ++ LP + + M + + G +++GV +G + + ++ Sbjct: 221 GKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKIMTI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] Length = 299 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 95/181 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +KR +F D+ P+ +D ++R++R G P+ I Q F ++++ + Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++++ + + MP+ E F + V+S+Q + GG L+ L L LR R + A +Q Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ +LP V +++ T + N L+ G +++ +L G+ ++R Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293 Query: 182 M 182 M Sbjct: 294 M 294 >gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 88/169 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A F D ++L ++ S+RAG + AV + +++ P EF R++ +G L Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + M + + + I + ++GGNL+E L + +R+R ++ +V+ALS E Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K SA ++ +LPF + + T+P Y+ G++++ + +G Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVG 298 >gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 93/179 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R + ++ P LD VRS+++G +SDAV + + P++ R+ LG+SL Sbjct: 114 RVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQLGVSL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ E F+ + V + GGN SE + NL R++R+R+ +++A++ E Sbjct: 174 PDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + ND G ++L +A L+G +++ M+ Sbjct: 234 TRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLWRMLR 292 >gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 282 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 95/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ LG+ + Sbjct: 101 KKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIRLGIDM 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ + Sbjct: 161 DIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIKALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L +P G L V +G + + + N Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 327 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 102/186 (54%), Gaps = 4/186 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ + Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181 + SA++I LP ++ + +P YM+ + + P L VA M+ IG + Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321 Query: 182 MINFDV 187 +++ +V Sbjct: 322 IVDIEV 327 >gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] Length = 291 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL +R F P+A+ +I +VRAG ++ A+ + + P EF ++ Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++L +++ + R M ++ F + + ++ GGNL+E L L+ +R + ++ K+ Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + W++ LP V ++ P M L++ +G ++ V A ++G++ +R Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284 Query: 181 LMINFDV 187 ++ D+ Sbjct: 285 RIMAIDI 291 >gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 367 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L Sbjct: 186 QQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETRVNIPL 245 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ + Sbjct: 246 EDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 305 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+G+LP + L+ +P Y+ L+ P G LLG G++V+R +I Sbjct: 306 GRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIRALIRV 365 Query: 186 DV 187 DV Sbjct: 366 DV 367 >gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 284 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 98/184 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R K P+ L ++ S+RAGL + A+ + + P+ EF V+ Q +G+ Sbjct: 101 LKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMGV 160 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ +P+Q+V+ F + +++ ++GGNL+E+L +L+ LR R M+ KV++L+ Sbjct: 161 KLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSLT 220 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + T + P M+ L + P G ++ VA +G + ++ Sbjct: 221 AQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKIV 280 Query: 184 NFDV 187 D+ Sbjct: 281 TIDI 284 >gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 327 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 101/186 (54%), Gaps = 4/186 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ + Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181 + SA++I LP ++ + +P YM + + P L VA M+ IG + Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321 Query: 182 MINFDV 187 +++ +V Sbjct: 322 IVDIEV 327 >gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA] gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA] Length = 325 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 325 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+AL I ++RAG +S AV V+V P+ EF V++ Q LG+S Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVSF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ ++QAL+ + Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQ 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ P + ++Y P M +L + G +L V + +G ++R ++ Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVAI 283 Query: 186 DV 187 D+ Sbjct: 284 DI 285 >gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 282 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ L Sbjct: 97 KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++A Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + ++ LP + ++ F P M L P G L V L+G + Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+AL I ++RAG +S A+ V+V P+ EF V++ Q LG+S Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVSF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ +++AL+ + Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQ 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ P + ++Y P M++L G ++L V A +++G ++R ++ Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVAI 283 Query: 186 DV 187 D+ Sbjct: 284 DI 285 >gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292 >gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292 >gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 323 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 94/181 (51%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF +AL I+ S+R+G A+ ++ + P+ EF ++ + G Sbjct: 143 KRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMNWGTPTE 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ MV + +++ T + +Q Q+GGNL+E L ++ +R+R +K +++ L+ + Sbjct: 203 EALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S IIG LP +S ++ + YM VL G ++ A F ++G+ +++ +I Sbjct: 263 RISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIKKIIKIP 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 294 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF +AL +I S++AG ++ A+ + Q+ P+ EFR +I+ Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +++ M R + ++ +T I Q GG L+ L ++ ++R+R + KV+ Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + A +I P + +++ +P + + +P G LL VA F +IG +++R Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287 Query: 181 LMINFDV 187 ++ +V Sbjct: 288 RIVTIEV 294 >gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 294 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 322 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 94/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P ++ + + SDP+ SE + + G + Sbjct: 141 KKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +ESI M + +Q++ F + + +Q GGNL+E LA L+ ++R R + KV+ ++ E Sbjct: 201 AESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P + P Y + +I+ P A + + ++MR+++N Sbjct: 261 ARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 282 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ LG+ L Sbjct: 101 KKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLGIDL 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ + Sbjct: 161 DIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L P G L V L+G + + N Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 300 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 95/182 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R +F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L +A L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P + ++ DP G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 282 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F M L ++P G L V +G + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 RITNIDV 282 >gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea DSS12] Length = 311 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 90/172 (52%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F FP L I R+V AG+ V A+A + + EF + + +G+SL +++ Sbjct: 135 QFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQTLE 194 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P FF+ + + + GG L E L +L R L D +K K+++L+ E + +A Sbjct: 195 QACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRMTA 254 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I+ SLP + ++++F +P VL N GH +L + + +G+ ++ ++ Sbjct: 255 LILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINML 306 >gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804] gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii] Length = 281 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 92/158 (58%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G+ VS A+ IV S P+ EF ++ Q LG+S +++R+ + +P + + + + Sbjct: 124 GVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALARLSQRVPSEASALVAAALR 183 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V + GGNL+E L ++R LR+R ++ KV+AL+ + + AWI+G+LP ++ ++ P Sbjct: 184 VATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAWIVGALPLLLAAVLDRMEP 243 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 M +L + P G +L V A G++++R +++ D+ Sbjct: 244 DAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281 >gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 294 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 294 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato Max13] gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato K40] gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 94/179 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLWRMLR 293 >gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 94/179 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLWRMLR 293 >gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] Length = 303 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 303 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 303 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01] gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01] gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116] Length = 300 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 94/182 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+ +R F + FP+AL+I++ +V AG + A++ + + + EF+ + + L Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ DP G ++L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 322 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 96/176 (54%), Gaps = 4/176 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D P+A++++VRS+R G P++ A+ + + DP+ +EF + + G ++ +S+ + Sbjct: 149 DQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVVDSLRDLA 208 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +Q++ F + +S+Q GGNL+E L L++++R R + +V+A++ E K S + Sbjct: 209 ERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPKWSGVFL 268 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187 + P V ++ +P Y + + + P + F L+G ++ M++M V Sbjct: 269 SAFPVAVLVVIQVVAPTYYDNVKDSP--SFVPAALIVFALLGANVLFMKIMTTIKV 322 >gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ KR F + FP+AL+I++ +V AG + A+ + + + EF+R+ + L Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L + + ++ K A Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ +P L+ + +P ++ +++DP G LL +G+ ++ L Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVK 296 >gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 300 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 94/182 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ D G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] Length = 309 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++ K L P LD +VR + G V A V + P+R +VI Q G Sbjct: 128 IRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGKE 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +M R L E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 188 LDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSA 247 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V ++ + GY+ ++ DP G +L AA + G Sbjct: 248 ETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAG 298 >gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 309 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 97/184 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I K+ +F +AL I+ +RAG ++ A+ + DP+ SEFR Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +S++ M +++ + + +Q Q+GGNL+E L N+S+ +RDR +K V+ Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G +P + ++ SP Y ++ GH+++ ++ +G + + Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302 Query: 181 LMIN 184 +++ Sbjct: 303 KIVD 306 >gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246] Length = 330 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K+L A +++ R +R G V++A VG DP+ EF R + G+ + Sbjct: 157 KYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAFR 216 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M + E+ F +++Q Q GGNLSE L L+ ++R R ++ K++AL+ E + + Sbjct: 217 EMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQS 276 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + LP V ++YF + Y L+ R +LLG + +G + +R ++NF+ Sbjct: 277 RTLTVLPVVVFAMMYFLNRPYAEGLLAQWR--LLLGTVTC-VAVGTLWIRNIMNFE 329 >gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105] Length = 302 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 88/179 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + L PN LD +VR G ++ + + + P++ ++ Q+ GL L Sbjct: 122 RKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAGLEL 181 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ R+ R L E ++V+++ GG L L++ LRDR+ ++ A+S E Sbjct: 182 DQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAMSSE 241 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + L ++ ++ +P Y+ + ND G MLL VA + G ++ M+ Sbjct: 242 ARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRMVK 300 >gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 309 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 88/169 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R AKF + + +++ +R G V +V ++ P E R++ +G Sbjct: 129 RRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGKDSR 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + M ++ + S I + ++GG+L+E L ++ +R+R +K ++++LS E Sbjct: 189 LAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEG 248 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K SA+++ ++P V+ ++ F + GY+NV + P G ++L +A +G Sbjct: 249 KMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVG 297 >gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L +A A + G +V+ M+ Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRML 291 >gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 303 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/180 (21%), Positives = 93/180 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R + P +D + R++ G V AV + P+R+ RV+ LG Sbjct: 122 LQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGAG 181 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ + ++E+ + I + S G + E L ++ +++R ++ + ++ A++ Sbjct: 182 FADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTG 241 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E K +AW++ P + ++ +PGY+++++NDP G ++ A A ++G+++ M+ Sbjct: 242 ETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMMK 301 >gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] Length = 319 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 88/170 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 KF + + L ++ ++RAG A +I + P+ E + V+ +LG +L ++ Sbjct: 143 KFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESALD 202 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M R + + T + +Q Q+GG+L+ L +S + +R M+ +V L+ + + S Sbjct: 203 NMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG 262 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ LPF ++ ++ F P Y+ L+ D G +++G+A LIGI ++ Sbjct: 263 IVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIK 312 >gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 4/178 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYF--TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP +ST YF +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 236 MTAVVLALLP--ISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 291 >gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 321 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 86/181 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K A+ P LD VR V G V A + + DP++S + G+ L Sbjct: 137 QKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 196 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 197 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 256 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + +D G ++GVAAA + G++++ + Sbjct: 257 TRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLYRLAKL 316 Query: 186 D 186 D Sbjct: 317 D 317 >gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 307 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 307 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100] gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100] gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + ++R KF+D + L I+ ++AG +++ +V +P+ EF +V+ + Sbjct: 106 RMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + I+ +PF + + P ++ + N G +LL +IG ++++ Sbjct: 226 LTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIKK 285 Query: 182 MINFDV 187 ++ V Sbjct: 286 LVTIKV 291 >gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 1/180 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 S E + SAW++G LP V+ ++ + GY+ ++ DP G +L AAA + G +M+ RL Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304 >gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 293 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 290 >gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 304 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 93/181 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +++ KF +FP+AL+I+ ++ +G + A + Q ++ V +EF+ + E +G Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ +P G + IG + + L+ Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299 Query: 183 I 183 + Sbjct: 300 L 300 >gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] Length = 281 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 90/179 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K LIKKR K + FP+ L + ++++G + ++ +I S P+ EF + L Sbjct: 95 KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ES++ +++ P +S F T++ V + GGNL+ L LS +R+ + K+ A Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ +++ +WI+ LP + ++ +P N G+ L + + G + M+ Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMK 273 >gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 304 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 92/180 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ KF ++FP+AL+I+ ++ +G + A + Q + V +EF+ + E +G Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ +P G + IG + + ++ Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300 >gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 296 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 87/179 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L+ +R + +AL ++ +RAGL V A+ ++V + PV EF +++ Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E + + +P ++ F + I++ + GGNL+E + ++R+R +K K+ Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + I +P+ + + + + P + + P G +L A AF G V+ Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVI 288 >gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 305 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 >gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 312 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 6/175 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 131 VRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQRAGKE 190 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +M R LQE+ ++V+ + + GG + + +RDR+ + ++ ALS Sbjct: 191 LDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELMALSA 250 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173 E + SAWI+G LP V ++ + GY+ ++ DP G + L +A AFML Sbjct: 251 ETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFML 305 >gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110] gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 6 KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A + P+A+ ++ +VR+GLPV +A + + P +F V +LG Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ + R + E + F+ ++VQ + GG+L+E L NL +R R + A+ +AL+ Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E S+ + P ++Y ++P +++L DP G+ LL A A +L+G +V+ M+ Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMV 332 >gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 305 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 >gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 322 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 84/181 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K A+ P LD VR V G V A + + DP++S + G+ L Sbjct: 138 QKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 197 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 198 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 257 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + ND G ++ AAA + G++++ M Sbjct: 258 IRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLYRMAKL 317 Query: 186 D 186 D Sbjct: 318 D 318 >gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 305 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300 >gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7] gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7] Length = 282 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R +F + P+ L + ++RAG + A+ IV QS P+ EF ++ Q +G+ Sbjct: 101 KLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQRMGIGF 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + R MP + + +++ +Q GGNL+E L +++ LR R + ++VQAL+ + Sbjct: 161 EQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + AWI+ LP ++ ++++ P M L P G ++ ++GI +R ++ Sbjct: 221 GRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIRRIVAI 280 Query: 186 DV 187 + Sbjct: 281 TI 282 >gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 321 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R F + L ++ S+RAG + +I + P+ +EF V+ Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ M + + ++ S T + +Q Q+GGNL+ L + + +R ++ +V Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + K S ++ +P + TSP Y+ L+ G M +G A +IG +++ Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314 Query: 181 LMINFDV 187 +++ + Sbjct: 315 RIVDIKI 321 >gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 318 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+A D++ R++RAG V A VI + P++ EF E QHLG+ ++ + R Sbjct: 150 LPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRDLARR 209 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + E+ F + + + GGNL+E L NL+ +LR R + +++AL+ E + A ++ + Sbjct: 210 TSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAVVLIA 269 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 LP + ++Y + Y VL++ P MLL LIG + +R +I+ + Sbjct: 270 LPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317 >gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 95/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L ++ +F P +D ++R++R G P++D ++ Q + F ++ + + Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + + E F + V+S+Q + GG LSE LA L LR R+ + A +Q Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ +A ++ +LP + +++ T + L+ G +LG + + +G+ ++R Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288 Query: 182 MINFD 186 + Sbjct: 289 LTRLQ 293 >gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 96/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + +KR A+F+D + L I+ ++AG +++ +V +P+ EF +V+ + Sbjct: 106 RMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + I+ +PF + + P ++ + + G +LL +IG ++++ Sbjct: 226 LTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIKK 285 Query: 182 MINFDV 187 ++ V Sbjct: 286 LVTIKV 291 >gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 306 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 1/181 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64 KKR+ +F +AL +I ++R G +++ + +P+ SE +RVIE + +S Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ R+ + E +T + +Q + GGNL+ + ++ + R +K KV++ + Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + ++PF V + SPGYM+ P ++ AA IG+ ++ M Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302 Query: 185 F 185 F Sbjct: 303 F 303 >gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX] gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX] Length = 310 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 10/186 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F P ++ + +AGL + A+ + + +DP +E R V E+ +G Sbjct: 129 EKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIKVGQPF 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++ + + MP +E+ + + V ++ GG L AL N+S L +RK + +V+ + E Sbjct: 189 EEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVRTILSE 248 Query: 126 AKASAWI-----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++AW +GSL F ++ L+ PG + + G ++LG A IG +V+R Sbjct: 249 TTSTAWTLLLMGVGSL-FLLNALM----PGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303 Query: 181 LMINFD 186 M D Sbjct: 304 RMSRID 309 >gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 310 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 94/181 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR ++ P +D++ RS AG + A+A++ ++ P+ EFRR + LS+ Sbjct: 129 KKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLDMNLSV 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + L ++ ++ + + + GGNL L ++ ++RDR N + +++A + Sbjct: 189 PAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGA 248 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA ++ + ++ P +++ L DP G++LL +A +IGI+ + ++ Sbjct: 249 GRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVSTLLRT 308 Query: 186 D 186 D Sbjct: 309 D 309 >gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 308 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 127 VRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAGKE 186 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ ALS Sbjct: 187 LDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSA 246 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173 E + SAWI+G LP V+ ++ + GY+ ++ DP G + L +A AFML Sbjct: 247 ETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFML 301 >gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] Length = 198 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 20 RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 80 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 195 >gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 281 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K+ K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L Sbjct: 96 KYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVKL 155 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L E++ M + + ++ ++ QLGGN++E +S ++R+R ++ K+ A Sbjct: 156 GVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDA 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K WI+ S+P + ++ P M +++ G++L+ V A ++GI+++R Sbjct: 216 LTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIRR 275 Query: 182 MINFDV 187 ++N D+ Sbjct: 276 IVNIDI 281 >gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] Length = 293 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 82/156 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD +VRS+ AG + DA+ V + DP+R F LG+ L Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + ++E+ + +SV + GGN ++ L + R++ +R+ + ++ A++ E Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + SA+++ +P + + ++PGY+ + D G Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSG 268 >gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct] Length = 295 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1] gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2] gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58] gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1] gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58] Length = 294 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14] gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1] gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 294 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44] Length = 327 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 82/181 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + P LD VR V G V A + + DP++S + G+ L Sbjct: 143 QKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 203 ENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + ND G ++ A A + G++++ M Sbjct: 263 TRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMAKL 322 Query: 186 D 186 D Sbjct: 323 D 323 >gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] Length = 294 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ D ++ +R+ + +S SR Sbjct: 123 FPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDPVTVFEDSYSR 182 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T+I GG + E ++ L RI+ D K M+ K +A++ EA+ SA Sbjct: 183 Y----PYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSAM 238 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ S P + FT P + LINDP G +L LIG++++ ++ Sbjct: 239 IVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLM 290 >gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 304 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 91/181 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 120 NLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ + G + A L+G + L+ Sbjct: 240 TSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWLI 299 Query: 183 I 183 + Sbjct: 300 L 300 >gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 306 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 88/175 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I KR L I S+R+G+ ++ A+A +G+ + + E +R+ Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + +P+ E + QLGGNL+E N+ + +R + ++ Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A + +AK A + G +PF V ++ SP Y+ +++ P G M+L ++ + +G Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLG 293 >gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 303 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 2/182 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F D FP+AL+++ +V +G + A+ + VG S D V EF+R+ E LG Sbjct: 119 LGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAI-IFVGASLDGKVGKEFKRMGEQLQLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ ++++ K AL Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ S+PF ++ + SP ++ +P G +L IGI+ + L+ Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297 Query: 183 IN 184 + Sbjct: 298 MK 299 >gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] Length = 306 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 83/165 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L +++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPIL 284 >gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633] gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633] Length = 289 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 110 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 169 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 170 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 229 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 230 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 286 >gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01] gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01] Length = 304 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 +SA II +LP ++ TSP ++ + G ++L+ F LI M++R Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLIS-MILR 301 >gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329] Length = 304 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301 >gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 304 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301 >gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 284 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 89/185 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L K+R + D P+ L ++ ++R G + + + S P+ E V+ Q LG Sbjct: 100 YLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQRLG 159 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++S + + Q+ + + + ++GGNL++ L L +R R M+ K++AL Sbjct: 160 VPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRAL 219 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++ +LP + + P L + RG +L +A ++G +R + Sbjct: 220 TSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIRKI 279 Query: 183 INFDV 187 ++ +V Sbjct: 280 VSIEV 284 >gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio splendidus LGP32] gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio splendidus LGP32] Length = 306 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 88/177 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298 >gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 313 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ K R A+ L P+ LD +VR G + A V Q+S P+R + Sbjct: 129 MRRTTKLR-AQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++S + + + S VI V ++GG + L + +RD + + ++ Sbjct: 188 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ Sbjct: 248 ATTSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 306 >gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] Length = 306 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 88/177 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298 >gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 315 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + +LG ++ Sbjct: 134 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLNLGRTV 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E Sbjct: 194 DDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L LV ++ G + + P G L+ ++ A +G +V+R + Sbjct: 254 VNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIRRLGRI 313 Query: 186 DV 187 +V Sbjct: 314 EV 315 >gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] Length = 294 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 91/174 (52%), Gaps = 8/174 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F P +D ++R++R G P++D I Q + R R+ H L + + ++ Sbjct: 118 QFRTGLPEVIDGMIRALRVGAPLAD----IFQQVARQQRGLMSRLFAQMHDELQVGQPVA 173 Query: 71 RMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R + + E F + V+S+Q + GG LS+ LA L LR R+ + A +Q ++ E+ Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + SA ++ +LP + +++ T + L+ G ++G + + +G+ ++R Sbjct: 234 RNSAKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIR 287 >gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K A+ L P+ LD +VR G + A V Q+S P+R + G+ L Sbjct: 139 KLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSGMDLD 198 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + S VI V ++GG + L + +RD + + ++ A + E Sbjct: 199 RALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSET 258 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ Sbjct: 259 RMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 311 >gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 304 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 91/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 121 LKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 APDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ + G + L+G + L++ Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300 >gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T] Length = 289 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 1/185 (0%) Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L+++R ++ P+AL +I +RAG+ ++ A+ +V + P+ EF + LG Sbjct: 105 LLRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + + + ++ + + ++ GG+L+EAL + +R + M+ K+ AL Sbjct: 165 IPLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGAL 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K A ++G LP + ++ P M L + P G L V A ++G++++R + Sbjct: 225 TAQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRI 284 Query: 183 INFDV 187 + DV Sbjct: 285 VAIDV 289 >gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110] Length = 241 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 82/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P +D +VR + G A + + + P+R R G+ Sbjct: 60 LQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGVD 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 120 LDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSA 179 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAWI+G LP V T + +P Y + ND G ML+ +A L+G Sbjct: 180 ETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLG 230 >gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 291 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEF-----RRV 55 +I R K ++ +A+ VR L V ++++V + QSS P+ EF RR+ Sbjct: 104 IIDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRI 163 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G ++ES++++ L E+ F T I + GG+L+ L+NL +R R + Sbjct: 164 AN----GAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAV 219 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +V+ + + +ASAW++G LP V+++V S YM I +P G LL A + G Sbjct: 220 MREVRGSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFG 279 Query: 176 IMVMR 180 +MR Sbjct: 280 AFMMR 284 >gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp. damselae] gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae] Length = 306 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ KF + FP+AL+I+ ++ +G + A+ V VG++ D V +EF + E LG Sbjct: 123 LQKRERKKFEESFPDALNILTSAISSGESIIHAI-VFVGKTLDGAVGNEFSLMGERLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + GG L + ++ L+RI+ D + ++ K AL Sbjct: 182 ESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKYAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ ++PF ++ + SP ++ +P G +L IGI ++ L+ Sbjct: 242 TSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 306 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 ++ +F FP+AL+++ +V +G + ++ + VG+S + V EF+R+ E +G S Sbjct: 126 RQQKEFEMAFPDALNMLASAVSSGESLMHSI-IFVGKSLEGSVGEEFKRMGERLQMGESP 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + P + FF + Q GG L + + L+R++ D + ++ K AL+ E Sbjct: 185 DTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSE 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A+ SA I+ ++PF ++ + SP + ++N P+G +L Sbjct: 245 ARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPIL 284 >gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1] gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1] Length = 295 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R+ KF+ P+AL + ++++GL + ++ +V +P+ EF +V+ +G L Sbjct: 114 KNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYRIGTDL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S + + + EV ++ I + +GGNL+ NL+ LR+ ++ K++A++ Sbjct: 174 NDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIKAMTAM 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + ++P V+ + + M +L + G + LG+ +G+ ++ ++N Sbjct: 234 GSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIKKIVNV 293 Query: 186 DV 187 DV Sbjct: 294 DV 295 >gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] Length = 318 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 5 IKKRT----AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 I +RT A+ L P+ LD +VR G + A V Q+S P+R + Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++S + + + S VI V ++GG + L + +RD + + ++ Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E + SAW++G LP + L+ SP + ++++P GH +L +A L+G ++ Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLL 311 >gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] Length = 308 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F +FP+AL+++ SV AG + A+ + + V EF+R+ E ++G S + Sbjct: 132 FERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLNIGESTDAVFRK 191 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P FF + V GG L + L+R+L + ++++ K +A++ EA+ S++ Sbjct: 192 ACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEARMSSY 251 Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLL 165 I+ ++PF + ++ SP + ++NDP G LL Sbjct: 252 IVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLL 286 >gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 283 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 84/159 (52%), Gaps = 1/159 (0%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ ++RAG V AV V + P++ E ++ LG SL E++ R P E Sbjct: 115 GVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPE 174 Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + +++ ++GG + +AL +++ +R+R +K +V+A + + SA ++G++P Sbjct: 175 TRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLW 234 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++F +PG++ L+ P G V A +++G ++ Sbjct: 235 CLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273 >gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] Length = 317 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +RT P A I R++RAG + A+ ++ P+ EF E QHLG Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ ++ MVR + + E+ F+ + VQ + GGNL+E L L+ ++R R ++ +V+AL Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + A ++ ++P V + +P Y +VL +L+G A + IG ++ + Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWE--HYEILIGCAIS-QCIGAFLISRI 312 Query: 183 INFD 186 +N D Sbjct: 313 VNID 316 >gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 330 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P +D +VR + G A + + P+R R G+ Sbjct: 149 LQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGVD 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 209 LDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAWI+G LP V T + ++P Y L ND G ML+ A L+G Sbjct: 269 ETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLG 319 >gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 297 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 88/175 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R ++ P +D + + G ++ A+ + + VRS V LG + Sbjct: 116 QRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLELGAPV 175 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++A E Sbjct: 176 ADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELKAAISE 235 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AK S ++ +P ++ +P Y++ + DPRGH L VA +G++VMR Sbjct: 236 AKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290 >gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 304 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 89/180 (49%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 121 LKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ + G + L+G + L++ Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300 >gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 337 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326 >gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 316 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F P+ L + +RAG + A+ ++ P+ E R++ Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L ES++ + R ++ + S I + ++GG+L+E L ++ +RDR +K +V+ Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ALS E + SA ++ +LP + + +P Y V Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVF 284 >gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1] Length = 337 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326 >gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 316 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 85/161 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + +R A+F + L ++ S+RAG + AV + ++ P + EF R++ LG Sbjct: 133 MTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVRLGR 192 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + ++ + + I + ++GG+L+E L +++ +R+R +K +V+ALS Sbjct: 193 DLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVRALS 252 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 E + SA+++ +LP + + + Y+ L P G ++ Sbjct: 253 AEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIM 293 >gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 297 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 69/121 (57%) Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K ++ Sbjct: 170 ELGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKREL 229 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A EA+ S ++ +P L+ +PGY++ + DPRGH L VA A +G++VM Sbjct: 230 KAAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVM 289 Query: 180 R 180 R Sbjct: 290 R 290 >gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 300 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 6/182 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R P AL + +VR+G +S+A ++ + P+ EF + LG + Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++RM +PL E F+T + V + GGNLS +S RDR++++ + A++ ++ Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240 Query: 128 ASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM-I 183 SA+ ++G + V+ L + P Y+ + +P+G LL +A ++G I V R++ + Sbjct: 241 LSAFGMVLGGI-IAVAFLTWL-EPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298 Query: 184 NF 185 N+ Sbjct: 299 NY 300 >gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50] gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 281 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R + Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42] gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 321 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314 Query: 181 LMINFDV 187 M+ V Sbjct: 315 SMMKVSV 321 >gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H+I+ R K + P+ LD++ SV+AGL + A+ +V + P+ EFRR++ Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++ S+ M R +Q+V F + +LG ++S+ L + +RD + +A+ Q Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ KA +I L FC+ ++ Sbjct: 273 AM----KAPVKMIFPLVFCIFPAIF 293 >gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 287 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 302 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 88/178 (49%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 T + ++D P +D + + + G + A+A + SS V + I LG L E+ Sbjct: 124 TEQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEA 183 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++ + L E+S ++ I V + GG L+ L+N++ ++R+R + ++ A + E + Sbjct: 184 LQQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRV 243 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 SA ++ +P ++ ++ Y++ ++ RG L VA A LIG M + D Sbjct: 244 SAKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301 >gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KK+ +F + L ++ R+V AGL V A+ + + + EF + + LG+SL Sbjct: 118 KKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGISL 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +FS + + GG L E L NLSR + D + M KV++++ E Sbjct: 178 RQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAE 237 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + LP + +V + +L+ G +L AA + G Sbjct: 238 PRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFG 287 >gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 312 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 67/124 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + +AGL + A+ + V + DP R E RRV + LG SL Sbjct: 132 KRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLALGRSLD 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L + Sbjct: 192 DALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQV 251 Query: 127 KASA 130 K +A Sbjct: 252 KVTA 255 >gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 287 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] Length = 338 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R K + P+ LD +VR V G V A +G + P+R +V G+ Sbjct: 157 ISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVE 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 217 IDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAMSA 276 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V + V T+P Y + + G ++L VA ++G Sbjct: 277 ETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLG 327 >gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 305 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 2/177 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L ++ +F + FP AL+++ +V +G + A+ + VG + D V EF+ + + LG Sbjct: 122 LQRREKKQFEEAFPEALNMLTSAVSSGESIMHAI-IFVGTALDGEVGKEFKLMGDRLRLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ D + ++ K AL Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ASA I+G++PF L+ + SP ++ P G +L IGI ++ Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISII 297 >gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 318 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311 Query: 181 LMINFDV 187 M+ V Sbjct: 312 SMMKVSV 318 >gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] Length = 311 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P LD +VR G + A V + +P+R R G+ L Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R LQE+ + VI V + GG L ++ +RDR+ + ++ ALS E Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SAWI+G LP + + + ++ DP G LL A IG Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIG 300 >gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] Length = 304 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + +F N L +I R+V AGL V A+ + + EF + + LGLSL Sbjct: 120 KMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLGLSL 179 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ +P +FS + + GG L + L +LSR + D + M+ KV++L+ E Sbjct: 180 RQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSE 239 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + +A + LP + +Y P + L N G +L A Sbjct: 240 PRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYA 282 >gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + L P LD +VR + G V A + P+R+ + + Q G L Sbjct: 128 RKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + R + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+ RL Sbjct: 248 TRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304 >gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLRTGVE 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 209 IDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + NDP G MLL A L G Sbjct: 269 ETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAG 319 >gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 302 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 RQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L + L +LSR L D + M+ KV++L+ E Sbjct: 179 KHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + +V + +P VLI G +L A ++IG + ++LM Sbjct: 239 PRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLM 295 >gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 275 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 83/169 (49%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R P+ L +I +RAG A+ V +S P+ EF ++ LG+ L Sbjct: 95 RRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIRLGIDLD 154 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + +P+ + + + + ++GGNL++AL +++ LRD+ M+ K++AL+ + Sbjct: 155 VAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQG 214 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ LP + ++ P M L P G L V AA L+G Sbjct: 215 RMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLG 263 >gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 289 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 92/177 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++AK +A+D+++ ++ AG V+ A+A + +SS P++ + ++ LG Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +PL+ FS+ ++V ++GG+L+ LA+ R +RDR + ++Q+ Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +++ S I L + ++ +V+ SP M +N G ++ + +GI+ M Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWM 281 >gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] Length = 293 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ +F + FP + I+ + +G + A+ S + EF + H L++ Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAI----HKRLAI 167 Query: 66 SESISRMV-----RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E + + RY P +E FF T+I V GG + E + L R++ D K M+ K Sbjct: 168 GEDANSVFEDSYSRY-PYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKS 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A++ EA+ SA I+ S P + F P L+NDP G M+L Sbjct: 227 AMTSEARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMIL 271 >gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 320 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + L P LD +VR + G A + + DP+ ++ L Sbjct: 141 KRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSASPDLG 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ R L E + V + + GG L +S +RDR++ + ++ ALS E Sbjct: 201 QAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEI 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAW++ LP V L+ + GY + ND G ++ VAAA +G ++ Sbjct: 261 RMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLL 313 >gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 341 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 90/182 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 160 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLALGRSV 219 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L DRK + +V+ + E Sbjct: 220 DDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSE 279 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L L+ ++ G + + P G +L+ ++ +G V+R + Sbjct: 280 VNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIRRLGKI 339 Query: 186 DV 187 +V Sbjct: 340 EV 341 >gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304 >gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] Length = 335 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P+AL + AGL V A A + ++ P+R F V LG S+ E++ R R Sbjct: 164 PDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELGRSVDEALERFRRAS 223 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 L E+SF + + VQ GG+ S + + + ++ ++ + +AK SA ++ + Sbjct: 224 SLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQTAQAKLSAQVVSIM 283 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ PG+M+ G LL AAA + GI ++ +++ D+ Sbjct: 284 PIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRVLDVDI 334 >gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] Length = 308 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/181 (19%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K T + + A ++ + ++G+ ++ + V+ + + P R EF+ + + LGL Sbjct: 129 KYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGLDFE 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + + +E F + + +Q + GGNL++ L +++ L +RK ++ ++ + E Sbjct: 189 RALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATAEQ 248 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++I+ ++P + ++ G+++++ P G +L+ + M + ++++R + N Sbjct: 249 RFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVTNIK 307 Query: 187 V 187 V Sbjct: 308 V 308 >gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70] Length = 291 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS----LSESISR 71 FP + I+ + G + ++ + + EF+ + + LG +S SR Sbjct: 120 FPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPMSVFEDSYSR 179 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T+I GG + E + L R++ D K M+ K +A++ EA+ SA+ Sbjct: 180 Y----PYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEARMSAF 235 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVAAAFMLIGIMVMR 180 I+ S P + F P + L+NDP G + + G A MLI +MR Sbjct: 236 IVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288 >gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415] Length = 295 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 AMAVFHDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 224 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + + P+ LD IVR V G V A + + +P+RS V G+ Sbjct: 43 IQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLRGGVE 102 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 103 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 162 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y++ + NDP G LL VA L G Sbjct: 163 ETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGG 213 >gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 282 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 92/182 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R A P+ L + ++RAG + A+ +V ++ P+ E ++ LG+ L Sbjct: 101 KRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGIDL 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + R +P+ + + +++ ++GGNL+EAL +++R L + M+ K++AL+ + Sbjct: 161 DIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L ++ G + L V A +G + + N Sbjct: 221 GRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] Length = 281 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 89/185 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + KR P L + +++G+ + +AV + + P+ E +I L Sbjct: 95 RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ R +P+ ++ +++ + GG S+ L L+ L ++ ++ + QA Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS + + AW++ +P + L+ + P + L N G + LGVA LIG M+++ Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274 Query: 182 MINFD 186 ++N D Sbjct: 275 ILNTD 279 >gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 326 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVE 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD ++ + ++ A+S Sbjct: 205 IDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ +P V + V TSP Y + ND G L+ +A A +G Sbjct: 265 ETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMG 315 >gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1 [Achromobacter xylosoxidans A8] Length = 281 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 81/148 (54%) Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 +V QS P+ EF ++ Q +G+ ++ + MP + + + +Q GGNL+ Sbjct: 134 VVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGGNLA 193 Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 EAL ++++ LR R ++AK+ AL+ + + AWI+GSLP + ++ P M +L + P Sbjct: 194 EALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLWHTP 253 Query: 160 RGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G +L + A G++++R ++ D+ Sbjct: 254 VGWGVLTIVAVLETTGMLLIRRIVRIDI 281 >gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 286 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 76/158 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + L P +D + R+ R G + + ++ + P+ E R + +G++++ Sbjct: 104 RRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQMGVTMN 163 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + + + +T +SV Q GG+L L L+R LRDR +++A++ + Sbjct: 164 EALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLRAITAGS 223 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +A+A ++ LP + F P Y+ L+ G + Sbjct: 224 RATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFI 261 >gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 13/183 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRV 55 +I++R F +AL + +V+AG V AV V G+ +D V EFR + Sbjct: 67 RMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIV-EEFRYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 QH+ + L E + ++++ F++V + GG+++ + +SR+L D+ ++ Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----AAA 170 K +++A K+ I+ +P + + TSPG+++VL +P G + + AAA Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245 Query: 171 FML 173 + L Sbjct: 246 YWL 248 >gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 290 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D FP L ++ +V AG + A+ + F R+ +LG + Sbjct: 115 FEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERVFND 174 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +E FF V+ V Q GG L + LSRI+ + KNM + A++ EA+ SA Sbjct: 175 AWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAK 234 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ SLP + + SP + +++DP G ++L A IG++++ +++ Sbjct: 235 IVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILL 286 >gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 307 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 92/177 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RTAKF++ P ++ + AGL + A+A++ + +P RSEF +V G SL Sbjct: 126 QRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLRFGASL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++ +EV+ + + V ++ GG+L AL ++ L +RK + +V + + Sbjct: 186 QTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVTTILSQ 245 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A+A++I + + + PG + ++ + G + L + +G +V+R M Sbjct: 246 SLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIRQM 302 >gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74] Length = 314 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 88/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSVD 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T +++ ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 194 EALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] Length = 329 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R K + P+ LD +VR V G V A +G + P+R +V G+ Sbjct: 148 ISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTGVE 207 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++E +V+ + + GG L +S +RD + + +++A+S Sbjct: 208 IDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSA 267 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V + V T+P Y + + G ++L VA IG Sbjct: 268 ETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIG 318 >gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 199 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 9/186 (4%) Query: 3 HLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57 L ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ Sbjct: 14 KLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLAR 73 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + +S SR P +E FF ++I GG + E ++ L R + D M+ Sbjct: 74 GEDVMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQ 129 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K +A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ Sbjct: 130 KKKAMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMF 189 Query: 178 VMRLMI 183 ++ ++ Sbjct: 190 IIWWLM 195 >gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 308 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 81/174 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ Sbjct: 248 TRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLIL 301 >gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20] gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 206 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 25 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 84 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 85 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 144 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 145 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 195 >gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 237 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 56 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 115 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 116 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 175 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 176 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 226 >gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 296 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 KF + A+ +I ++RAG V+ A+ + SDP++SEFRR+ G + E++ Sbjct: 120 KFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDIRAGTPVPEALD 179 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +++ F+T + + Q GG+L++ N+ + +R R + +++ + + + Sbjct: 180 KVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIES 239 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I+ LP + + SP + + P G L+ +A + ++MR M Sbjct: 240 QIMVGLPVFMMAALLAISPSHRE-FYSQPSGWALIALAVVLDTLAYLMMRKM 290 >gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 211 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 30 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 89 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 90 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 149 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 150 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 200 >gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 308 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304 >gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 215 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 34 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 93 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 94 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 153 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 154 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 204 >gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 216 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 35 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 94 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 95 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 154 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 155 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 205 >gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 312 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 84/169 (49%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F++ P ++ + +AGL + A+ + V + +P + E RRV + +G SL Sbjct: 132 KRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLAVGHSLD 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L + Sbjct: 192 DALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +A + L ++ G ++ + G + + VAA G Sbjct: 252 KVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAG 300 >gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 220 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 39 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 98 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 99 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 158 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 159 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 209 >gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 326 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 77/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V + G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGVE 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + D G L+ +A A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIG 315 >gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786] Length = 268 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 78/163 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+ LD IVR V G V A + + P+R V G+ + Sbjct: 88 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 147 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E Sbjct: 148 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 207 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + SAW++G+LP + + V T+P Y + + DP G L+ +A Sbjct: 208 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLA 250 >gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis MSMB43] Length = 221 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 40 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 99 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 100 IDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 159 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 160 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 206 >gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] Length = 302 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 81/174 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + +F + L +I R+V AGL V A+ + + EF + + LGLSL Sbjct: 118 KLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALGLSL 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P +FS + + GG L + L LSR + D + M+ KV++L+ E Sbjct: 178 RDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSLTSE 237 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + +A + LP + + + P + LIN G +L + + G +++ Sbjct: 238 PRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLIL 291 >gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147] Length = 258 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+ LD IVR V G V A + + P+R V G+ + Sbjct: 78 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 137 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E Sbjct: 138 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 197 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 198 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQL--VYLAFIL 243 >gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + QE +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 209 IDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + DP G MLL +A + G Sbjct: 269 ETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAG 319 >gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 256 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 75 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 134 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 135 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 194 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 195 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 245 >gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191] gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191] Length = 535 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 96/182 (52%), Gaps = 1/182 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+L ++R K + ++L ++ S++AG+ + A ++ P+ EF VI+ Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + + +S+ I +Q Q+GGNL++ + +R+ ++ K+Q Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI-MVM 179 A++ + + + ++G +P+ + ++++ P M G ++L ++L+G+ MV Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528 Query: 180 RL 181 +L Sbjct: 529 KL 530 >gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599] gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 306 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 74/132 (56%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ S+RAGL +S ++++ + + P EF R+ LG+S ++S M + +P +E Sbjct: 142 LLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGVSFDRALSDMEKRIPTREF 201 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + +Q + GGNLS+ L ++ L DR+ + +++ ++ E + + ++ +P + Sbjct: 202 RIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMTAEQRYVSILVPIMPVALV 261 Query: 142 TLVYFTSPGYMN 153 ++ + G+++ Sbjct: 262 LMMNTMNKGFID 273 >gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 316 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 135 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 194 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 195 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 254 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 255 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 305 >gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4] Length = 242 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 61 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 120 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 121 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 180 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 181 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 227 >gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 326 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + ND G L+ +A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIG 315 >gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 83 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 142 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 143 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 202 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 203 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 253 >gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 326 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + ND G L+ +A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIG 315 >gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 1/178 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + L P+ LD +VR + G A + V P+ ++ + Sbjct: 136 LSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLRASPD 195 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + R L E + V + ++ GG + L +S +RDR++ + ++ ALS Sbjct: 196 LGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELHALSA 255 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-MLLGVAAAFMLIGIMVMRL 181 E + SAWI+ LP V L+ + GY + D G M+LG A L + RL Sbjct: 256 EVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLYRL 313 >gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC 10229] gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20] gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU] gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU] gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 306 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 125 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 184 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 185 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 244 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 245 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 295 >gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] Length = 299 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 2/172 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P L ++ +RAG + AV +V Q+ P+R EF RV L + +++ + Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132 + L E + V + GG+L L ++SR ++ DR+ ++A ++A E KASA + Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRA-MEAACAEGKASARL 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++P V LV + +P Y + DP G +LL + M +G +++R + + Sbjct: 244 VTAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITD 295 >gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH] Length = 261 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 80 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 140 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 199 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 200 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 246 >gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 302 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 KQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L E L +LSR L D + M+ KV++L+ E Sbjct: 179 RYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLTSE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + +V + +P +LI G +L A +++G + +++M Sbjct: 239 PRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVM 295 >gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 292 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/172 (20%), Positives = 91/172 (52%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + + P+ ++ + R ++ GL ++ AV ++ P++ +RVI + +G+ L ++ Sbjct: 117 QLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDAFE 176 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + ++ S+ ++ GG+++++L +L ++LR + + ++++++ E + +A Sbjct: 177 KESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRITA 236 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 W+IGS P VS + +P + + G L + + L+GI+++ M Sbjct: 237 WVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288 >gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 335 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324 >gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 335 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324 >gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 324 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 78/164 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + +P+R V G+ Sbjct: 143 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLRSGVE 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 203 IDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 E + SA+++ LP + + V T+P Y+ + NDP G LL +A Sbjct: 263 ETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLA 306 >gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264] gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 336 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 321 >gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] Length = 279 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 78/178 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K F D P + +I + +G ++ + + S P+ E + +LG S Sbjct: 98 KTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLNLGESP 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + E F T+I + Q GG L E ++ LS+++ K + K ++ + Sbjct: 158 EAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQ 217 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II +P STL+YF P M + N P G M+ +IGI ++R M+ Sbjct: 218 TRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIRTML 275 >gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 KQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L E L +LSR L + + M+ KV++L+ E Sbjct: 179 RYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSLTSE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + TLV + +P +LI G +L A +L+G + + LM Sbjct: 239 PRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295 >gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 329 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 148 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 207 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 208 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 267 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 268 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 318 >gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 2/181 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGL 63 KK F + + AL + S+RAG+ + AV + ++ EFR++ LG Sbjct: 106 KKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSDIQLGF 165 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+SE+ M +P +V + I +QS +GG+ +E++ ++ + R ++ +++ L Sbjct: 166 SISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLF 225 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 K + + LP + +Y++SP Y L + G ++ +A M+IG + R + Sbjct: 226 ASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYIDRKFL 285 Query: 184 N 184 N Sbjct: 286 N 286 >gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 146 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 205 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 206 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 265 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++ LP + + V T+P Y+ + ND G LL AFML Sbjct: 266 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 312 >gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 257 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 76 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 135 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 136 IDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 195 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + ND G +LL A L G Sbjct: 196 ETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAG 246 >gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 322 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 141 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 201 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++ LP + + V T+P Y+ + ND G LL AFML Sbjct: 261 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 307 >gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 304 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/178 (22%), Positives = 89/178 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K++ ++ F+++FP+AL+I+ ++ +G + A + Q ++ V EF+ + E + Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF + I + GG L + + ++R++ + ++++ K + Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 L+ E++ SA I+G LP ++ F SP + ++ G + IG ++ Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFII 296 >gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 404 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 78/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 224 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLRSGVEID 283 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD + + ++ A+S E Sbjct: 284 RALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 343 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 344 RLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 396 >gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 356 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 78/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 176 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLRSGVEID 235 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD + + ++ A+S E Sbjct: 236 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 295 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 296 RLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 348 >gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 386 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 79/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 206 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRSGVEID 265 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD ++ + ++ A+S E Sbjct: 266 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVAMSSET 325 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 326 RLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLL 378 >gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074] gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 311 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 87/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 130 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLALGRSV 189 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + +P +E+ T + + +Q GG + +L NL+ L +RK + +V+ + E Sbjct: 190 DAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVRTMLSE 249 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A + +L L+ + G + + G +L+ +A +G +V+R + Sbjct: 250 VHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIRRLGKI 309 Query: 186 DV 187 +V Sbjct: 310 EV 311 >gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78] Length = 242 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 62 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 122 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 181 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 182 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 241 Query: 187 V 187 V Sbjct: 242 V 242 >gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 342 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 84/181 (46%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 160 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 219 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ + ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 220 IDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSS 279 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A ++G ++ + N Sbjct: 280 ETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLYRLAN 339 Query: 185 F 185 Sbjct: 340 L 340 >gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 306 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M L + F + FP+AL ++ +V AG + + + VG++ D PV EF+++ + Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSF-IFVGRTLDGPVGKEFKKMGDRL 178 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G S + S+ + P FF + GG + E +A L+R++ + ++ K Sbjct: 179 QMGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKK 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 AL+ EA+ SA I+G+LPF L+ + SP ++ P G +L IG+ ++ Sbjct: 239 YALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLI 298 Query: 180 RLMIN 184 L++ Sbjct: 299 WLLMK 303 >gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 356 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 174 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 233 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 234 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 293 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N Sbjct: 294 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 353 Query: 185 F 185 Sbjct: 354 L 354 >gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG] gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF] gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 314 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 194 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184] gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184] Length = 204 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 23 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLRGGIE 82 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 83 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 142 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + DP G LL +A ++G Sbjct: 143 ETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVG 193 >gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] Length = 359 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 177 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 236 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 237 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 296 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N Sbjct: 297 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 356 Query: 185 F 185 Sbjct: 357 L 357 >gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 285 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 88/185 (47%), Gaps = 5/185 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R + L P L+ + R+ G V + ++ + P+ E + + Sbjct: 97 LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++++ + L + F + V Q GG+L L LS+ +RDR +++ Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHMLLGVAAAFMLIG-IM 177 A++ ++A+A ++ LP V L++FT P Y + L+ G +A +IG I Sbjct: 217 AMTAASRATALLMVVLPPGV--LIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIW 274 Query: 178 VMRLM 182 V+R++ Sbjct: 275 VLRIL 279 >gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700] gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700] Length = 294 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S SR Sbjct: 123 FPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPMAVFEDSYSR 182 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 183 Y----PYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEARMSAM 238 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ LP + F P LINDP G +L L G+ ++ ++ Sbjct: 239 IVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLM 290 >gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680] gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 313 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 88/182 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F+ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 132 QKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLTLGRSV 191 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E Sbjct: 192 DDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 251 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L L+ ++ G + + G L+ ++ +G V+R + Sbjct: 252 VNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIRRLGKI 311 Query: 186 DV 187 +V Sbjct: 312 EV 313 >gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 306 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 90/181 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F+ P ++ + AGL ++ A+A+ + P E RV G L Sbjct: 125 QRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMRFGEDL 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +I + +P +EV+ ++ + V ++ GG+L AL +++ L +RK ++ +V+ + + Sbjct: 185 DTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVRTVLAQ 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ +++ + F + L+ PG + + D G L V ++ + G +++R M F Sbjct: 245 STSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIRRMTRF 304 Query: 186 D 186 D Sbjct: 305 D 305 >gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 294 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R P ++ I+RS++AG +S AVA + PV +RV +G SL Sbjct: 114 QRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMGASL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + + + + + + GG+ + + + +LR R+ + +++A++ E Sbjct: 174 SDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA ++ LP V +P Y ++ G LLG A A+ ++GI ++ M+ Sbjct: 234 TRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRMVK 292 >gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 307 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 73/169 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + D P LD +VR + G ++ A +S+P+R + L Sbjct: 128 RRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQELD 187 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R +E+ + V+ V + GG L ++ +RD + ++ A S E Sbjct: 188 AALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEI 247 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SAW++ +P ++ + T+ + +DP G +L A L G Sbjct: 248 RLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAG 296 >gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C] gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C] Length = 312 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +RT +F++ P I+ + +AGL + A+ + + P E RV + +G S+ Sbjct: 132 RRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLAVGHSIE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ +V +P +E+ + + + ++ GG + +L NL+ L RK + +++ + Sbjct: 192 EALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+++ ++ LV PG ++ + G + +A +G +++R + D Sbjct: 252 TVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIRRLSKID 311 Query: 187 V 187 V Sbjct: 312 V 312 >gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 65/127 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A FP+ LD++ SV AGL A+A +V +S PV EFRRV++ Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ + +V F+ I QLG N+ + L S +R ++ + + Q Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267 Query: 121 ALSMEAK 127 A+ + K Sbjct: 268 AMKVPVK 274 >gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I] gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS] Length = 281 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822] gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis] Length = 281 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans] gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 318 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ ++RAG+ + A+ + + +P RSEFR+ LG +L ++ M R + ++ Sbjct: 154 QLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLALHDMRRRVCSRD 213 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I VQ Q GGNL L ++ L +R+ ++ ++ +L+ EA+ SA ++ LP Sbjct: 214 LDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSALVVMVLPIFF 273 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAA 169 ++ T G L G +LLGV A Sbjct: 274 LLMIRDTPLG--EALFQTVIGWVLLGVFA 300 >gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans] gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 291 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 84/170 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L+ +R + G A + +S+ P+R+ RV + LGL L E + R + Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L E++ +T + V + GG+L + L + +LR ++ + +++AL+ E + +A ++ Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P + + T+P +++ + + G L +A L G VM M+ Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289 >gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 305 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 85/176 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +K +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 122 LQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E + P FF + GG L + ++ L+R++ D + ++ K AL+ Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ SA I+ + PF ++ F SP ++ G +L IG++++ Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLII 297 >gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] Length = 284 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+ F DFP AL +I + +G ++ + + S P+ +EF + ++G S Sbjct: 103 KRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLNVGESP 162 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+ + Q GG L E + LS ++ K + K ++ + Sbjct: 163 EAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAVMTAQ 222 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II +P S L+YF P + + + P G M+ ++GI+++R M+ Sbjct: 223 VRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIRKML 280 >gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans] gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 295 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 + GQ +S RR+ + +S R P +E FF T+I GG + Sbjct: 152 LTGQLGQEFKSIHRRLSIGEDPATVFDDSYDRY----PYKEFYFFITIIRNNLNKGGQIR 207 Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 E ++ L R++ D M+ K +A++ EA+ SA I+ P + F P + L+NDP Sbjct: 208 EVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACFPVGFFFFMQFAMPENFDFLVNDP 267 Query: 160 RGHMLLGVAAAFMLIGIMVMRLMI 183 G +L L G+ ++ ++ Sbjct: 268 TGRYVLYYVFGSELFGMGIIWWLM 291 >gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 308 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 LI RT K L P LD +VR + G V A + P+R+ + + Q Sbjct: 122 LIWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQ 181 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ Sbjct: 182 RAGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQREL 241 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMV 178 ALS E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+ Sbjct: 242 FALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVML 301 Query: 179 MRL 181 RL Sbjct: 302 ARL 304 >gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 78/178 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+ + F DFP L +I + +G ++ + + S P+ E + +LG S Sbjct: 6 KRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLNLGESP 65 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L E + LS+++ K + K L+ + Sbjct: 66 ETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKSVLTAQ 125 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II ++P S L+YF + + ++P G M+ IGI V+R M+ Sbjct: 126 TRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIRKML 183 >gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 305 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 122 LQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E + P FF + GG L + ++ L+R++ D + ++ K AL+ Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ SA I+ + PF ++ F SP ++ G +L IG++++ Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLII 297 >gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50] gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 308 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P LD +VR + G V+ A +G P+ +R G L Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248 Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 287 >gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp. palearctica Y11] Length = 293 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S R E F T+I + Q GG L E + LS ++ K + K + Sbjct: 169 ESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288 Query: 183 I 183 + Sbjct: 289 L 289 >gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 322 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 261 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 80 IHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGVE 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 140 IDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMSS 199 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP + V T+P Y++ + ND G L +A + G Sbjct: 200 ETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAG 250 >gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 314 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + AGL + A+ + + P E V +G+ + Sbjct: 133 QKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLAVGVPM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 EDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A A +G +++R M Sbjct: 253 VNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIRRMSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] Length = 322 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14] gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14] Length = 313 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + AV + + P E +V LG S+ Sbjct: 132 QKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLALGASM 191 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 192 DDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 251 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + VA A +G +++R + Sbjct: 252 VNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIRRLSRI 311 Query: 186 DV 187 DV Sbjct: 312 DV 313 >gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] Length = 308 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 304 >gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 311 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/181 (20%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + AGL + ++A+ + P E R V + +G +L Sbjct: 131 KRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLGVGRTLD 190 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P +E+ + + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 191 DALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVRTQLSQI 250 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + ++ LV PG ++ + G + + V+ +G + +R + D Sbjct: 251 NATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIRRVSKID 310 Query: 187 V 187 + Sbjct: 311 I 311 >gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] Length = 321 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 92/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H I++R + P+A+ I + AGL + + +S P++ F RV + G Sbjct: 136 HAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAAG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E+++ + ++E++F +T + +Q Q GG++ + L +L N++ + Sbjct: 196 SPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVN 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ SA ++ ++ ++ ++ S G++ + G ++L VA + + GIM +R + Sbjct: 256 TAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRKI 315 Query: 183 IN 184 ++ Sbjct: 316 LS 317 >gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 319 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 139 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 199 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 259 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 315 >gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I] gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS] Length = 306 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 HL +K + + P LD +VR + G V+ A +G P+ +R Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 LS E + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285 >gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 314 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT +F++ P I+ + +AGL + ++++ + DP E RV +G L Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLAVGEPLE 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+ + L+ PG ++ + G + + V+ IG +V+R D Sbjct: 254 TVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIRRFSRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822] gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis] Length = 306 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 HL +K + + P LD +VR + G V+ A +G P+ +R Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 LS E + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285 >gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 318 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 138 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 197 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 198 DAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 257 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 258 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARL 314 >gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa] Length = 194 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E Sbjct: 69 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 + G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + Sbjct: 129 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIG 175 >gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + A A +G +++R + Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314 Query: 186 DV 187 DV Sbjct: 315 DV 316 >gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] Length = 272 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 68/158 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KK + F DFP L +I + +G ++ + + + P+ SE R + +LG S Sbjct: 91 KKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLNLGESP 150 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L + LS+I+ K + K ++ E Sbjct: 151 ESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAE 210 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + S II +P S L+YF + + N P G + Sbjct: 211 TRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKL 248 >gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 223 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 39 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 98 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 99 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 158 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 159 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 218 Query: 183 I 183 + Sbjct: 219 L 219 >gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24] gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24] gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24] Length = 316 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + A A +G +++R + Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314 Query: 186 DV 187 DV Sbjct: 315 DV 316 >gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703] Length = 293 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 169 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288 Query: 183 I 183 + Sbjct: 289 L 289 >gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 85/174 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P +D ++R+V AG + A+ S P+ +V LG + Sbjct: 125 QRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIKLGGEI 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S +R L+E+ + I V + G ++ E L +L +++ + + + +AL+ E Sbjct: 185 DTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFRALTGE 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ +AW++G +P + + T+P Y L +DP G +L +A G++ + Sbjct: 245 SRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLAL 298 >gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 86/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + A+++ + P E +V +G S+ Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLAVGHSV 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ + L+ SPG ++ + G + A A IG ++R M Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 286 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 5/181 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F + +P+ +D I +VRAGL +S+A+A + + P+R FRR Sbjct: 95 LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154 Query: 61 LGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +ES+ R+ + P+ + + I+ + GG+L L +LS LRD +++ Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVG-GGDLGRLLRSLSSFLRDDARTRSE 213 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++ + A + + P+ V L+ F G + N P G +++G+ AA ++ V Sbjct: 214 LESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRV 271 Query: 179 M 179 M Sbjct: 272 M 272 >gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 314 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT +F++ P I+ + +AGL + ++++ + +P E RV +G L Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLAVGEPLE 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+ + L+ PG ++ + G + VA IG +V+R + D Sbjct: 254 TVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIRRLSRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] Length = 293 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 76/178 (42%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K F DFP L +I + +G ++ + + P+ E + ++G S Sbjct: 112 KNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESP 171 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L E + LS+++ K + K ++ + Sbjct: 172 ETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQ 231 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S I+ +PF S +YF P + + N P G ++ + +IGI ++R M+ Sbjct: 232 TRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSML 289 >gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 15/186 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54 K LI++R K F +AL+ + +V+AG V +AVA + + +D V+ EF Sbjct: 56 KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVK-EFH- 113 Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 IETQ + + + E + + +++V F+ V + GG+++ + +R+L D+ Sbjct: 114 YIETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKI 173 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +++ +++ KA I+ +P + + TSPG+++VL + L G+ A + Sbjct: 174 DVRKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGN-----LFGMCAMTLC 228 Query: 174 IGIMVM 179 +GI V+ Sbjct: 229 LGIYVL 234 >gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 87/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF+ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 131 QKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLAVGHSI 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ + Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ + L+ + G ++ + + G + VA A +G ++R M Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 96 LSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNVG 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 156 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 215 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ LIG++V+R M Sbjct: 216 TAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRKM 275 Query: 183 I 183 + Sbjct: 276 L 276 >gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] Length = 332 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H + + + P+AL + +AGL + A ++ P+ F +V LG Sbjct: 147 HAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIELG 206 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAK 118 S+ E++ R L E++F + + VQ GG+ + L RI +D + ++ Sbjct: 207 HSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVL----RIAQDSVDHALELRRT 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + +AK SA I+ ++P + ++ SP + N G LL +AA+ + GI++ Sbjct: 263 LRVQTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILI 322 Query: 179 MRLMINFDV 187 +R M+ D+ Sbjct: 323 VRRMLAVDL 331 >gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 313 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 1/176 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+A L P LD +VR+ R G + A+ + PVR F +++ Q G + Sbjct: 135 RRSAAILA-LPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQSGTPID 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +QE++ +TV+ + + GG L ++ LR R +A+ ALS E Sbjct: 194 QAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAET 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A I+ + ++ + + Y+ + G MLL ++ G++++ M Sbjct: 254 RLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLNRM 309 >gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1] Length = 312 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 84/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F++ P I+ + +AGL + A+ + + P E RV + +G S+ Sbjct: 132 RRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLAIGHSIE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES+ + +P +E+ + + + ++ GG + +L NL+ L RK + +++ + Sbjct: 192 ESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+++ + LV PG ++ + G + VA +G +++R + D Sbjct: 252 TVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIRRLSKID 311 Query: 187 V 187 V Sbjct: 312 V 312 >gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168] gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168] Length = 300 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%) Query: 3 HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +L K+ A+ F F AL+II +V AG + + + S V EF + + Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + +E FF + + + GG + E +++L++++ + + M + Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E +AS I+ +P + F SP +VL++DP G MLL A L+G+ + Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294 Query: 181 LMIN 184 MIN Sbjct: 295 TMIN 298 >gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 314 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + AV + + P E +V +G S+ Sbjct: 133 QKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G ++ + P G + +A +G +++R + Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] Length = 305 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 1/185 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR + LD + AG + A+ + +S DP++S +V Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 SLSE+ + + +P+ E S ISV S++ N+S +++ ++ + Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E+K +++IIG +P + ++ P Y+ + P G + +A L G+ ++ Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291 Query: 180 RLMIN 184 R + N Sbjct: 292 RRISN 296 >gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] Length = 245 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVI 56 L KKR + +F + ++ + AG V +A + VI+ V EF ++ Sbjct: 55 ELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHIV 114 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + S+ +++S L +V F+ V + + GG L +++ + ++RD+ ++ Sbjct: 115 SQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVR 174 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ ++ + I+ +PF + + TSPG+ N++ N G +L+ + A + I Sbjct: 175 QEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGAI 234 Query: 177 MVMRLMINFDV 187 + R ++ ++ Sbjct: 235 AIARHIMKIEI 245 >gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] Length = 297 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 68/136 (50%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 ++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++R+ RDR+ + ++++ +++ S + L + V+ +++ P +M + G Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSA 273 Query: 164 LLGVAAAFMLIGIMVM 179 + +GI+ M Sbjct: 274 AIAATIVLQAVGIIWM 289 >gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264] Length = 301 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151 E + SAW++G+LP + + V T+P Y Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKY 301 >gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+++ + P E +V + +G SL Sbjct: 134 QKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLAVGTSL 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQ 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+ + + L+ PG ++ + G + A ++G + +R Sbjct: 254 VSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIRRFSKI 313 Query: 186 DV 187 DV Sbjct: 314 DV 315 >gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 314 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 133 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A +G +++R + Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 312 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 131 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 191 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A +G +++R + Sbjct: 251 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N] gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N] Length = 305 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 2/174 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P+ +D +VR + G V+ A + DP+ +R G L Sbjct: 126 ERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLD 185 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R LQE+ S+VIS+ + GG L ++ +RD + + ++ ALS E Sbjct: 186 SALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEV 245 Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S WI+ LP + ++ F + +M + DP G +L A ++G ++ Sbjct: 246 RMSVWILSLLPIGLGLFIIVFNNDLFMG-MWRDPLGFKMLIGGAMLQVVGTYLL 298 >gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] Length = 181 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 74/174 (42%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A F DFP + +I + +G ++ + + + P+ E + +LG S Sbjct: 4 AIFHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVF 63 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + E F T+I + Q GG L E LS ++ K + K ++ + + S Sbjct: 64 YDAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMS 123 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 II +P S L+YF P + + N G ++ A LIG+ ++R M+ Sbjct: 124 VNIISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKML 177 >gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437] Length = 315 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/159 (20%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AGL + + ++V + PV+ E RV+ LG L +++ ++ + Q++ F + Sbjct: 158 AGLSIPQGLRLVVQEMPAPVKIELGRVVREIELGRDLEGALNDLLERIHTQDMKVFINAL 217 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 +Q + GG+L++ ++ ++ + +RK + ++A++ +A+ SA+ + + ++ ++ Sbjct: 218 IIQRRAGGDLAKVMSQMAATMEERKIIHQTIKAVTSQARTSAYALPIISLLIAFMLSKMI 277 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G+ ++ P G ++L + ++G++++R N V Sbjct: 278 DGFYDLFTTLP-GMIVLALFVGLQVLGVVLVRKFSNIRV 315 >gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 312 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 86/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLAVGHSI 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ + Sbjct: 191 DDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ L L+ + G ++ + + G + VA IG ++R M Sbjct: 251 VTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 269 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55 K LI ++ + L +F A+ I+ + AG + ++V + + + + EF + Sbjct: 78 KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +A+ ++ D+ + Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ LP + + F+SPG+ N++ G M + V L Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 258 IYISKRLLNIEV 269 >gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP] gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi] gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP] Length = 295 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 6 KKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K D+ FP + I+ + +G+ + A+ P+ EF +R+ + Sbjct: 113 QRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S SR P + FF +I GG + E ++ L R + D M+ K + Sbjct: 173 AMAVFQDSYSRY----PYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S I+ P + F +P + ++NDP G ++L L+GI + Sbjct: 229 AMTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 247 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 10/194 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54 K LI++R F +AL+ + +V+AG V +AV + Q +D VR EF Sbjct: 56 KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVR-EFH- 113 Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 +ETQ + + + E + ++++ F+ V + GG+++ + SR+L D+ Sbjct: 114 YMETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKI 173 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +++ +++ KA I+ +P + + TSPG++ VL +P G + + + Sbjct: 174 DVRREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYG 233 Query: 174 IGIMVMRLMINFDV 187 + + R +++ +V Sbjct: 234 LSYWLGRRIVDIEV 247 >gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC 27064] gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 313 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 2/170 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + +AGL + A+A+ + DP E V + +G SL Sbjct: 133 KRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLAVGQSLD 192 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V + Sbjct: 193 DALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVTTTLSQI 252 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 K +A + L ++ +PG ++ + G AAF L G+ Sbjct: 253 KVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQG--ATLAAFGLYGL 300 >gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 306 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K L+ P+ LD++ SV AGL A+A ++ + P+ EF V++ +G Sbjct: 153 IAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMKVGKQ 212 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ M + L +++ F I QLG ++ L S +R+++ +AK +A+ Sbjct: 213 KRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKA 272 Query: 125 EAK 127 K Sbjct: 273 PVK 275 >gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N] gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N] Length = 282 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 82/166 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L + ++RAG + A+ + + P+ E ++ Q LG+S +++ R+ Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L V + V GGNL++ L +++ LR + + +++AL+ + + AW++ Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LP ++ ++Y P M L G +L+ + A ++G ++R Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIR 275 >gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 297 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 67/136 (49%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 ++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++R+ RDR+ + ++++ +++ S + L + V+ +++ P M + G Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSA 273 Query: 164 LLGVAAAFMLIGIMVM 179 + +GI+ M Sbjct: 274 AIAATIVLQAVGIVWM 289 >gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] Length = 291 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 L + AKF F ++ + + GL + ++ + +DP ++ + +++ +G Sbjct: 108 LAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQ-FADEHADPYIKKQSSLLLQRMSMG 166 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAK 118 S + ++ + V F+ I +Q +L++ L ++ ++ DR+ +KAK Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + K +A G LP+ + L +T P + L+NDP G + VA L G + Sbjct: 227 LSG----TKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLW 282 Query: 179 MRL 181 +RL Sbjct: 283 LRL 285 >gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 314 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/182 (20%), Positives = 85/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 133 QKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G ++ + G + +A + +G +++R + Sbjct: 253 VTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4 [Achromobacter xylosoxidans A8] gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4 [Achromobacter xylosoxidans A8] Length = 307 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P LD IVR + G + A + +P+R V+ET SLS Sbjct: 129 KRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLRE----VVETAS---SLS 181 Query: 67 ES------ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S ++++ R L+E+ + V+S+ + GG + L ++ +RD + ++ Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A S E + SAWI+ LP ++ + + L DP+G +L A + G Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGG 296 >gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] Length = 307 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 60/123 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + P LD++ SV+AGL A++ I + P E RR+ + +G+ Sbjct: 156 IQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIRMGVV 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ M L++VS F T I +LG ++ + L N + +R+R+ K QA+ Sbjct: 216 RRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKA 275 Query: 125 EAK 127 K Sbjct: 276 PVK 278 >gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5] Length = 260 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIETQHLGLSLSESI 69 F +AL + +V+AG +AV V + + EFR + L + + E Sbjct: 83 FRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYIESQLRLSVPVEELF 142 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + ++++ F+ V + GG++++ + ++R+L D+ +K +++A K+ Sbjct: 143 LDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEVKKEIEATLAAKKSE 202 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 ++ +P + + TSPG+++VL +P G Sbjct: 203 QMVMSIMPAGIICYLKLTSPGFLDVLYGNPFG 234 >gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 289 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K + F D F +L +I R++ +G ++ ++ + +R EF R+I+ + Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L E+++ P + + FS + + + GG++ ++L L++ L + ++ K Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +L+ E++ +A I+ LPF + ++ + L + G ++ + IG ++++ Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281 Query: 181 LMIN 184 MI+ Sbjct: 282 RMID 285 >gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 311 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR + P+ALD++ V AGL A+ + + DP+ EF+RV+ LG Sbjct: 155 IKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTRLGRP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++ M+ + +V F + QLG ++ L S +R R+ +A+ +A Sbjct: 215 RRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271 >gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] Length = 247 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 3/171 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + A + S+ +GL ++ A+ + + +PVR+EF R G + Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ +V + + F + + V + G LS+ L +R++R+R ++ K+ + + Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + SA ++ +P + + S + + P +A A +L GI Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVPGAA---SIAVALLLDGI 234 >gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 311 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG + Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIRLGRT 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ M +++V F + + QLG ++S+ L S LR R+ +A+ A Sbjct: 211 RREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAA 267 >gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG + Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIRLGRT 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ +V +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 211 RREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAE------ 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGV 167 EA A + +P +V+ P V++ PR LGV Sbjct: 265 EAAQKAPVKMLIP-----MVFLIFPALFVVILGPAVPRIMQALGV 304 >gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 68/159 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P LD IVR + G + A + +P+R L Sbjct: 128 KRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAKELD 187 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R L+E+ + V+S+ + GG + L ++ +RD + ++ A S E Sbjct: 188 AALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEV 247 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 + SAWI+ LP ++ + + L DP G +L Sbjct: 248 RLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKML 286 >gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 308 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ AKF P I+ S AGL + A+ V + DP EF + +G Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ RM + +++ + + + + GG+L +L N+S L RK K +V+ L Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + +++ + L+ + G + L + G + + +A IG++ + ++ Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218] Length = 318 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 298 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIETQHLGL 63 K R + D P LD IV +V AGL ++ + A + G P+ EFRR++ GL Sbjct: 145 KHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKG-PLAQEFRRLLRDMRSGL 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +E++ RM M + ++S F+ + ++G +L +L + R+ + ++A+ AL Sbjct: 204 ARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEKLALE 263 Query: 124 MEAK 127 K Sbjct: 264 APVK 267 >gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] Length = 318 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] Length = 314 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 + HL+KKR ++ P+ALD++V +GL + A VA V S E V Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + ++ L E++ T+++ S++GG+L++ L + RD++N + Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium profundum SS9] gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum SS9] Length = 322 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR + FP+ALD++V + AGL A VA + S + SE + V LG Sbjct: 166 KKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLG 225 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++S+ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A Sbjct: 226 VPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 284 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 AK +I L C+ PG+ V I G ++ V AF Sbjct: 285 ---AKIGTKMIFPLVTCI-------WPGFFTVAI----GPAIIAVLEAF 319 >gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 296 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 K R + D P LD I SV AGL V+ + V + + + EF R++ GL Sbjct: 143 KLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDIRAGLP 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ RM M + +++ F++ + ++G NLS+ L + R+ + ++A+ AL Sbjct: 203 RAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEA 262 Query: 125 EAK 127 K Sbjct: 263 PVK 265 >gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans C54] Length = 303 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 71/165 (43%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P LD IVR V G ++ A + +P+R L ++ ++ R Sbjct: 138 QLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQVSR 197 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 ++E+ + V+SV + GG + L ++ +RD +A++ A S E + SAWI+ Sbjct: 198 QYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWILA 257 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 LP ++ + + L DP G +L A + G ++ Sbjct: 258 LLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYIL 302 >gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 K+R + L D P LD I V GL ++ A+ + V + + P+R+EFR ++ G+ Sbjct: 184 KRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGMP 243 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E R + +QE+ T I + GG+L+ L + R+ + ++A+ AL Sbjct: 244 RVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALEA 303 Query: 125 EAK 127 K Sbjct: 304 PVK 306 >gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 274 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 10/189 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--------VIVGQSSDPVRSEFRRV 55 L++KR + F AL + S+ AG V +A + G ++D VR EF + Sbjct: 84 LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVR-EFAMI 142 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G +L +S+ L+E++ F V S + GG+L + + S+++ ++ ++ Sbjct: 143 RHRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDI 202 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLI 174 + ++ + + + + I+ ++PF + +P Y L + P G++ L + F+ Sbjct: 203 QQEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGC 262 Query: 175 GIMVMRLMI 183 G ++ +LM+ Sbjct: 263 GALIRKLMM 271 >gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K P+ LD++ SV AGL A+ +V + + P+ EF R+++ +G Sbjct: 152 ISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIRMGKP 211 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + +++++ F T I +LG ++ + L S+ +R ++ +A+ QA+ Sbjct: 212 RRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKA 271 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K + LV+F P +L+ Sbjct: 272 PIK-----------MLLPLVFFIFPTLFIILLG 293 >gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27] Length = 217 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 91 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210 Query: 181 LMI 183 M+ Sbjct: 211 KML 213 >gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] Length = 314 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++KKR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 306 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 AL I SVR+ L + A+ DP+R E RV+ G +L+ + RM R Sbjct: 134 RALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTD 193 Query: 78 LQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +V + + +Q + GG ++ L A+ + LR + +K ++ + + W + Sbjct: 194 SPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRL----AKWFV 249 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +++ T+ + P G ++LGVA G+ + + D Sbjct: 250 ALAMPAIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302 >gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 297 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR D P+ LD++ +V AGL A+A + ++ P+ E V+ ++G ++ Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ S + + + + F T + +LG L++ LA ++ +R +A+ +A Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKA---- 259 Query: 126 AKASAWIIG 134 AKAS I G Sbjct: 260 AKASPKIAG 268 >gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10] gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10] Length = 270 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263 Query: 181 LMI 183 M+ Sbjct: 264 KML 266 >gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] Length = 270 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIE 57 ++ + +R A+ L D AL + S++AG + A+ + S P R IE Sbjct: 77 VRDTLARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIE 136 Query: 58 TQ----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 LG + E++ + +PL+E++ + + GGN+ E + N+++++ DR Sbjct: 137 LTAREVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRL 196 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ ++Q L+ + + A I+ +P + +V T+P Y+ V G LG+ Sbjct: 197 AVEREIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGL 250 >gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri] Length = 296 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/178 (17%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I+ + +G ++ + + + +EF + +LG + Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + R E FF++VI + + GG LS+ + + + + + +K + ++ + Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + +Y+ P + L + G ++ ++GI ++R MI Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292 >gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] Length = 247 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51 K +I+KR + F + L + S+ AG P+ A VG SD + E Sbjct: 55 KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKA---FVGALSDLYVLYPSDDAYIVRE 111 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + +I L +S+ E++S + ++ FS VI + + GGNL +A+ N SRI+ + Sbjct: 112 TKIIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISE 171 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + M +++ L K ++ +P + ++ T+ Y+N + G +AA Sbjct: 172 KIEMAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGR----IAATL 227 Query: 172 MLI 174 LI Sbjct: 228 CLI 230 >gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 317 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60 I R K ++ FP+ALD++V V AG+ + A+ VG+ S P+ EFR + Sbjct: 160 IGARKEKIMEGFPDALDLMVICVEAGMGLDQAINR-VGEEMKLSCPPISDEFRTLNMEMR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ M L +V+ T++ Q G ++ +AL S +R ++ +A+ + Sbjct: 219 MGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEK 278 Query: 121 A 121 A Sbjct: 279 A 279 >gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 307 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD++V SV AGL A+ + +S P+ E RV++ +G S + Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + ++EV F + S+LG ++ L +R R ++ +A+ M Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAE----EMAQ 270 Query: 127 KASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 K ++ + C+ + ++ PG ++++ Sbjct: 271 KVPVKVMFPVVLCILPALIITVVGPGVLSIM 301 >gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str. 91001] gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953] gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua] gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516] gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F] gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola] gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis FV-1] gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92] gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516] gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92] gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F] gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis Angola] gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004] gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038] gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 291 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 300 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I +G+ V++ I+ ++ ++ + + LS+ Sbjct: 119 KQKKIYFTETFPELLLIFNMGSVSGISVNE----ILKKAGQEIKGGLGKECDLIFRRLSI 174 Query: 66 SESISRMVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E+I+ V Y Q S+ F ++ + GG L E + L++++ + M+ + Sbjct: 175 GENINT-VFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKM 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + S W++ +P YF +P + + G +++ A +GI +MR Sbjct: 234 AMTGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMR 293 Query: 181 LM 182 M Sbjct: 294 YM 295 >gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 317 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P LD++ SV AGL ++ + + + P+ E +RV + +G S E++ + + Sbjct: 174 PEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEISMGKSRKEALIDLKERI 233 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 LQ++S F I QLG +S L S+ R ++ +A+ QA+ K Sbjct: 234 DLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVK 284 >gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 291 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia pseudotuberculosis IP 31758] gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia pseudotuberculosis IP 31758] Length = 291 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 76/183 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI ++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 283 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/162 (20%), Positives = 78/162 (48%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 S+++G+ + A + +V P+ EF + E G + ++ + + +S Sbjct: 122 SIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADERLQVPRLSLIF 181 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 I + + GG L+ + L+ R+ + ++ +V+ + + SA I+ +PF + L+Y Sbjct: 182 QTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMFLMPFFICGLLY 241 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + +L ++ G+++L +A A + +M+ +I D+ Sbjct: 242 LIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283 >gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2] gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 268 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/182 (19%), Positives = 80/182 (43%), Gaps = 6/182 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62 +KR + P +D ++R + AG + A+ + + P+ R +E+ Sbjct: 85 QKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVESGRDY 144 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L + S++ R PL +F + + S G + L +SR LR ++ M+ + A Sbjct: 145 TGLIDDFSKLYRIPPL---TFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAA 201 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A LP + + + + +VL++ G +L + +++G +++ M Sbjct: 202 TAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFRM 261 Query: 183 IN 184 + Sbjct: 262 VQ 263 >gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 329 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 290 EEIAAKIPTK 299 >gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 323 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62 K R K + P+ALD++V +GL + A+ + + S + E V G Sbjct: 163 KDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFAKIQAG 222 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ +++S++V L E+ +++S S++GG+L++ L + + RD++ A+ A Sbjct: 223 VTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIAA 282 Query: 123 SMEAK 127 + K Sbjct: 283 KIPTK 287 >gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 314 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 314 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK S I+ L FC+ S V P + V+ Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++ KR +K P+ALD++V +GL + A+ + + S E V + Sbjct: 156 MVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVN 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ +S++ + +++ L+E++ T+++ S++GG+LS+ L + RD++N + + Sbjct: 216 AGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEV 275 Query: 121 ALSMEAK 127 A + K Sbjct: 276 AAKIPTK 282 >gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 326 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ +D++ +V AGL + AV + + PV +EFR+ ++ Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S E++ + L E+ F+ + +LG +L+ L + LR ++ +A+ Q Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288 Query: 121 ALSMEAK 127 A+ K Sbjct: 289 AMKTPIK 295 >gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 349 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 37/183 (20%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ ++D P ALD+I + AG P+ A+ ++ G P+ +E V + LG S+ Sbjct: 165 QRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGASM 224 Query: 66 SESISRMV---------------RYMPL----------------QEVSFFSTVISVQSQL 94 +E+ R++ R +P+ E++ F+ + + Sbjct: 225 AEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEES 284 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G L+ AL L+ R R+ + AL+ +A + L C L F + G + V Sbjct: 285 GARLAAALGRLADQTRARRQER----ALTAARRAGVTAVAPLGLCF--LPAFVALGVVPV 338 Query: 155 LIN 157 ++ Sbjct: 339 VMG 341 >gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P ALD+ + +G P+ A++ + + + FRR + LG +L+E+++ + Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALT---EF 135 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134 L + I + G L+++L L++ LR DR+ ALS +A W++ Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQ-----AALSHAHRAGVWMV- 189 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 LP C+ L F + G + V+I+ Sbjct: 190 -LPLCLCFLPAFIAAGLLPVVIS 211 >gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7] gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7] Length = 315 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 15/162 (9%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 PNALD I++ +S + +E V + +LG LS+S ++ Sbjct: 161 PNALDEIIKE---------------QNTSQVLINELITVKQNLNLGYPLSKSFMLAYEHL 205 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 ++E+ F+ +SV + GGN+ E L + + +K + K S + + Sbjct: 206 QIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLTVGI 265 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P LV F +P + G ++ +A +F+L GI + Sbjct: 266 PLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307 >gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20] gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 281 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279 >gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] Length = 314 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK S I+ L FC+ S V P + V+ Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 268 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54 K +I+KR ++ F + L I S+ AG V A + ++ + E Sbjct: 76 KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ +++ + + L+++ F+ V + GGNL + N + I+ D+ Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K ++ +PF + ++ T+ YM + + G +++ A + I Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255 Query: 175 GIMVMRLMINFDV 187 G V + +++ + Sbjct: 256 GYFVSKKIMDIKI 268 >gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 281 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279 >gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 287 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + L KKR A + P LD + S+ AGL ++ A++ V + S P+R EF +VI Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++S M + + E++ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250 Query: 120 QALSMEAK 127 +AL K Sbjct: 251 KALEAPVK 258 >gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 290 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 A+ + E +S ++ + + +V +P +M Sbjct: 252 AIARTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] Length = 314 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + + KR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 326 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54 K+ I KR D FP+ALD+++ V AG + A+ + + S P+ EF Sbjct: 163 KYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEI 222 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G ++ + M + +Q+V+ F T + S G +++EAL S +RD++ Sbjct: 223 VSYEMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRI 282 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 +A+ +A + K + + ++ FCV L+ Sbjct: 283 SRAEEKANKLPTKLTLF---TMLFCVPPLL 309 >gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 256 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 8/191 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56 L K+R K L +F AL ++ + AG + +A ++ ++G+++ + EF+++ Sbjct: 67 LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENA-MISREFQKIS 125 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L + + + L E+ FS + SV + GG L + S ++ D+ + Sbjct: 126 EGLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGIS 185 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ LS + I+ +PF + + +SP ++ +L G +L+ L+ + Sbjct: 186 EEILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAV 245 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 246 RLSERILDIEV 256 >gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter alkaliphilus HTCC2654] gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium HTCC2654] Length = 329 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56 +K I+ R A+ FPNALD++ S AG+ DA VGQS S + EF Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGF-DAAMTRVGQSLATVSPAISEEFLLCQ 227 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 ++++ M M + EVS F+ V+S + G ++++AL + +R+ + MK Sbjct: 228 AEILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMK 287 Query: 117 A 117 A Sbjct: 288 A 288 >gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R K L D P LD+I SV AGL A+A ++ + EF + ++ +G+ Sbjct: 152 IQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEITMGIE 211 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANL---SRILRDRKNMKA 117 ++ M ++E+S F + + +LG +LS+ L ANL R + K MKA Sbjct: 212 RKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREKAMKA 271 Query: 118 KVQAL 122 ++ L Sbjct: 272 PIKML 276 >gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] Length = 323 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ ++++++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 295 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ L P+ LD++ SV AGL A+ +V +S P+ EF + +G Sbjct: 144 RQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIRMGKPR 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ M R + + +VS F + LG ++S L + +R ++ +A+ +A Sbjct: 204 REALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKA 259 >gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 96 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ +P Y+ Sbjct: 5 GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPNYLLH 64 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +D G ++L A A G +V+ M+ Sbjct: 65 MWDDESGKIMLSAAFALQATGCVVLWRML 93 >gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM 3645] gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM 3645] Length = 288 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57 ++ ++R + + P+ +D++V + G+ ++A++ + + + + E V Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+SL +S RM ++EV ST + + G + EA+ LS +LR ++ +A Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234 Query: 118 KVQA 121 + +A Sbjct: 235 EERA 238 >gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] Length = 247 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 25/177 (14%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRRVIE 57 I+++ + F + LD + +++AG V +A+++ + G+ +D R E R + + Sbjct: 59 IREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTR-ELREMED 117 Query: 58 TQHLGLSLSESISRMVRYMPL------QEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 L LS + R+ +M L ++V F+ V + GG++ + L +++L D Sbjct: 118 K----LKLSVPVERL--FMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGD 171 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + +K +++A+ K+ ++ +PF + + TSPG++ VL + L GVA Sbjct: 172 KIEVKKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGN-----LFGVA 223 >gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 290 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK R + + + P L+ IV V AG V AV V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + E +S ++ + + +V +P +M Sbjct: 252 AIGRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] Length = 233 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +HL K+R K P L + +R+G V A+ + G P+ E ++ + + Sbjct: 46 RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQS-----QLGGNLSEALANLSRILRDRKNMK 116 G L++ + R +P+ FS + VQS + GG S+ L+ L+ ++++K Sbjct: 106 GKPLTDCLEDWQRRVPV-----FSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIK 160 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-G 175 + L+ +A+ A I+ +P + L+ + + + G +L VA M+I G Sbjct: 161 ERQITLTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGG 220 Query: 176 IMVMRLM 182 MV R+M Sbjct: 221 WMVKRIM 227 >gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 292 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M+ + ++ A L P LD + +V AGL V+ A+ V + D P+R EF V+ Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +++ R + EVS I+ ++G L++ L S R + +A+ Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253 Query: 120 QALSMEAK 127 QA+ K Sbjct: 254 QAMEAPVK 261 >gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 308 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++KR+ + D P+ LD++ SV AGL A+A + + + EF R ++ + Sbjct: 153 KIAMRKRSIQ--KDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMRM 210 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ E++ M + ++S F+T + QLG ++ + L S +R+++ + + Q Sbjct: 211 GVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKR--RQRTQE 268 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 L+M+A LP LV+F P V++ Sbjct: 269 LAMKAPVKML----LP-----LVFFIFPAIFVVVLG 295 >gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] Length = 179 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 P++ R+ LG+SL ++ E F+ + V + GGN SE + NL Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61 Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +++RDR+ +++A++ E + +A ++ LP Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTALVLALLP 92 >gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842] gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842] Length = 327 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ FF ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A + + + +A I+ +LPF F P ++L+ P G ++ Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFK----FFMPQAYSILMRTPLGSIVF 303 >gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] Length = 257 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 170 AFMLIGIMVMRL 181 F+ I+ + L Sbjct: 246 CFLAFKILDIEL 257 >gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 264 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/193 (18%), Positives = 88/193 (45%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54 K +I+KR + F + L + S+ AG + + +++I S+ + E Sbjct: 72 KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ ++ L+++ F V+ + GGN+ + + N S I+ D+ Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K I+ +P + + ++ YM + +D RG +++ ++ A ++I Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251 Query: 175 GIMVMRLMINFDV 187 + + ++N V Sbjct: 252 AYFISKKIMNIKV 264 >gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] Length = 224 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR K + FP+ALD++V + AGL A VA + S + +E + V LG Sbjct: 68 KKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCRKVRLG 127 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++++ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A Sbjct: 128 VPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 186 Query: 123 SMEAKASAWIIGSLPFCV 140 AK +I L C+ Sbjct: 187 ---AKIGTKMIFPLVTCI 201 >gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 311 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 52/106 (49%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ALD++ V AGL A+ + + DP+ EF+RV+ LG +++ M+ Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + +V F + QLG ++ L S +R R+ +A+ +A Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271 >gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] Length = 257 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 170 AFMLIGIMVMRL 181 F+ I+ + L Sbjct: 246 CFLSFKILDIEL 257 >gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 296 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + + P+ +D++V SV AGL + A++ + + P+ F R + LG S Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ +P++EV F + +LG +SE L + + L+ + +KA+ A Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHA 258 >gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243] gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b] gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91] gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210] gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894] gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112] gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215] gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Burkholderia pseudomallei 1710b] gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 319 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 290 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + E +S ++ + + +V +P +M Sbjct: 252 AITRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 279 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 I R LD P +D+I V+AG+ V +V I +S+D + +++ + Sbjct: 124 INTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEV 183 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L E + + R M + E+ F + G +L E L LS+ +RD + + ++ + Sbjct: 184 S-GLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKI 242 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + AK S +I + F ++ L+ +PG + ++ N Sbjct: 243 GKLSAKMSVPLILFIMFPITILI--AAPGILRIMQN 276 >gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] Length = 223 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60 +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 71 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 130 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA Sbjct: 131 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 188 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + L EA + +L F + +V +P M Sbjct: 189 RILGEEASSKLVFPMALIFLI-VIVIVAAPAMM 220 >gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] Length = 205 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54 ++ L +KR +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + ++Q + K I+ ++PF + + T +++VL + G + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTIC 186 >gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 66/134 (49%) Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E + +I L +S+ ++IS + ++ FS VI + + GGNL EA+ N SRI+ Sbjct: 111 ETKIIINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIIS 170 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ MK +++ L + I+ +P + ++ T+ Y+ + G + + + Sbjct: 171 EKIEMKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLV 230 Query: 171 FMLIGIMVMRLMIN 184 +++ ++ ++N Sbjct: 231 LLIVAYLISNKIMN 244 >gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 288 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60 +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 136 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA Sbjct: 196 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 253 Query: 120 QALSMEAKAS 129 + L EA + Sbjct: 254 RILGEEASSK 263 >gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 296 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 6/153 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + PN LD ++ SV AGL A+A S P+ E R ++ G S Sbjct: 143 ERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGRSRK 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ + + + ++ F I G ++ L ++ +R ++ +A+ QA+ + Sbjct: 203 EAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMKLPV 262 Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLIN 157 K ++ L FC+ +++ P +NV+ N Sbjct: 263 K----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291 >gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 326 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 +KKR A+ + FP+ALD+++ V AG + ++ + +S + EF V + Sbjct: 167 VKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M + + +V+ F T + + G +++EAL S +RD++ M+A+ +A Sbjct: 227 GKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKA 286 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157 ++ K + +G++ F + L+ P N+ + Sbjct: 287 NTLPTKLT---LGTMLFTLPPLLIILIGPSIHNIAVT 320 >gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 313 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 265 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302 >gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 293 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++R A+ L P LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] Length = 285 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 1/177 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K D + +D + R+ + G ++ + ++ P+ E + +G+S+ Sbjct: 103 RRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVSMK 162 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + ++ S + V + GG+L + L L+R +RDR +++ + + Sbjct: 163 AALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGS 222 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM 182 +A+A ++ LP + P Y+ L+ G A A +IG + V+R++ Sbjct: 223 RATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVL 279 >gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] Length = 285 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 3/173 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQHLGLSLSESISR 71 +P AL + +++ G A+ + P+R F R + T + E++ Sbjct: 106 QYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVLE 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++ + + + + GGNL E L +L + L +R++ + V A++ EA+ +A Sbjct: 166 VAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAA 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LPF + + +P +M + + G+ L+ A +L+G V+R M++ Sbjct: 226 FLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMVS 278 >gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 320 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/149 (18%), Positives = 69/149 (46%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A + ++ +G ++ + + + +PVR+EF R + G+S + ++ Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +P + + + V + G L + LA S ++ DR + +++ + +A+ SA Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 ++ +P ++ ++ S + L P Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP 293 >gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415] Length = 281 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R++ Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++IK++TA + P+ LD++ SV AGL A++ +V P+ E + Sbjct: 151 RNIIKRKTAIY-HQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREISM 209 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKV 119 G+ E++ R+ E+ F I+ +LG ++ + + +R ++N++ + Sbjct: 210 GIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQA 269 Query: 120 QALSME 125 Q LS++ Sbjct: 270 QKLSVK 275 >gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 291 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K D +P+A+D I VRAGL + +A+A + + + +R F R E Sbjct: 105 RKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYRATGRF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 + + R+ M + + ++GG +L L LS LR+ +A+++A Sbjct: 165 HDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAELEARQS 224 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A + + P+ V ++ G + P G ++L A ++ +M Sbjct: 225 WTINAARLAVAAPWVVLAMLALRG-GSLQAYAT-PTGWLVLAFGAGLCIVAYRLM 277 >gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 320 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRS-EFRRVIE 57 ++ LIKKR + + FP+ LD+++ AGL ++ A+ + + S PV S E V Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ E++ ++E+ F +S + G ++++ L S RD++ +A Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCV 140 + M AK +I L FC+ Sbjct: 279 E----EMAAKMGTKMIFPLIFCI 297 >gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] Length = 314 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++ KR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 157 MVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKIS 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ +S++ + +++ L E++ T+++ S++GG+LS+ L + RD++N + + Sbjct: 217 AGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEI 276 Query: 121 ALSMEAK 127 A + K Sbjct: 277 AAKIPTK 283 >gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 323 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ +++ L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] Length = 254 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/179 (20%), Positives = 84/179 (46%), Gaps = 8/179 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 F +A+ ++ S++AG + +A + ++ G++SD + R+ + + L + Sbjct: 77 FKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSD-ISFYLSRISKGLRNNVPLEKL 135 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 I M + ++ F+ V SV + GGN++E + ++ + ++ +++ L + Sbjct: 136 IFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVLISAKRL 195 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A I+ +PF + + TSPG+ + L ++ G L+ V I + ++N + Sbjct: 196 EARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCISYYLSEKIVNISI 254 >gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 275 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 114 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 167 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 168 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 227 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 228 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 264 >gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] Length = 326 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R K + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 168 IEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKA 227 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + M +Q++S F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 228 GKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAA 287 Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 + K + +G ++P + LV + G MN+ Sbjct: 288 NKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321 >gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis MSMB43] Length = 279 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R K ++DFP+ALD++ V AGL + A+ + +D +R R I LGL Sbjct: 118 IRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPIVADELGLM 171 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V F ++ + G ++ +L LS LR ++ M Sbjct: 172 LLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRM 231 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 232 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 268 >gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] Length = 301 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/182 (18%), Positives = 81/182 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R A+F + +L ++ ++RAG + A+ + S DP++SE + + Sbjct: 119 KSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQIDGDI 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ M + +++ ++ ++GG+L+++L + + R +++ +++ + Sbjct: 179 VAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIESETSS 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AS + + + ++ P + DP G +L V F G +++ M + Sbjct: 239 VIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIYKMADI 298 Query: 186 DV 187 DV Sbjct: 299 DV 300 >gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 308 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 7/154 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 ++KR + FP+ALD+++ V AG + ++ + + S + EF V Sbjct: 153 VEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+VS F TV+ + G ++S+AL + +RD++ M+A+ A Sbjct: 213 GKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAA 272 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A ++ ++P L+ +P MN+ Sbjct: 273 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 303 >gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 331 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ +D++ SV AGL A+ + + PV +EFR+ ++ LG+ E++ + Sbjct: 189 LPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLADR 248 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L E+ F+ + +LG +L+ L + LR ++ +A+ QA+ K Sbjct: 249 CELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIK-------- 300 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + LV F P VL+ G L+ + AAF Sbjct: 301 ---MLLPLVLFIFPTLFIVLL----GPALIQILAAF 329 >gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 282 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSS--DPVRSEFRRVIETQ 59 L+++R + + P AL ++ V AG PV A + + G+ P+ E+ RV+ Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97 G S S ++ R R +QEVS F+TVI + + GG+ Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGD 226 >gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 324 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + +A I+ +LPF F P ++L+ P G ++ + + +L Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 308 >gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 310 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R + P+ALD++ SV AGL A+ + ++ + EF +++ H+G Sbjct: 157 IRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECHMGKP 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ M + + ++S F I + LG ++ L S+ +R ++ + K + L+M Sbjct: 217 RREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKR--RQKTEELAM 274 Query: 125 EA 126 +A Sbjct: 275 KA 276 >gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 13/168 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57 H + + K +F + I S+ AG + +A+ + + + E + +I Sbjct: 63 HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113 + + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++ Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + A ME K I+ +P+ + V +PGY ++L G Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226 >gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] Length = 205 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 312 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58 + HL+ R + + FP+ALD++ V AGL A+ + Q P ++ R++ Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206 Query: 59 Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G ++ + ++EV F T+IS + G +++ +L + +LR R+ +A Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + A AK + ++ L FC+ S +V P + + Sbjct: 267 EEAA----AKIALKLLFPLIFCIFPSLMVVLMGPAMIQI 301 >gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] Length = 249 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 57 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + ++Q + K I+ ++PF + + T +++VL + G + + Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTIC 230 >gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 327 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + +A I+ +LPF F P ++L+ P G ++ + + +L Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 311 >gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 314 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 314 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 320 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L K+R K FP+ALD++V AGL + A VA + S + SE V Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S R+++ A Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 278 EEQAAKLAVK 287 >gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4] gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 ++R A+ L LD + +V AGL ++ A+ V + + P R E V+ GL+ Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQ 59 +R L F + L+ + S G A +A I G+ +D V E ++ Sbjct: 91 RRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVH-EIEMIVNGI 149 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G ++ + L +V F+T+ V S+ GGNL +A+ + RI+ ++ M+ ++ Sbjct: 150 YNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEMEMEI 209 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + L K I+ +P + +V + G M+++ N P Sbjct: 210 RTLLTANKNELNIMMLMPLII--MVTLSGMGSMSIVQNTP 247 >gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 313 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292 >gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 313 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292 >gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] Length = 322 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++HL +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++ L S RD++ A Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 280 EEQAAKLAVK 289 >gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++R + L P LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L P LD + +V AGL ++ A+ V + + P+R EF V+ GL+ E++ R Sbjct: 147 LKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALYR 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 M + ++EV+ + ++G LS++L S R + +A+ QA+ K Sbjct: 207 MDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVK 262 >gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +IK R + ++FP+A D+++ V AGL + A+ + + S+ + E Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + ++E+ F+T+++ + G ++ E+L S LR ++ ++A Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + A + K ++ + C+S ++ Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI 281 >gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 321 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L K+R FP+ALD++V AGL + A VA + S + SE V Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 279 EEQAAKLAVK 288 >gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 337 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 + RT + D FP+ALD+++ V AG + + + + SS P + EF V Sbjct: 176 VAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKA 235 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL + + +V+ F TV+ Q G +++EAL + +RD++ M+A+ A Sbjct: 236 GLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAA 295 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157 + K + +G++ F V L+ P +++ N Sbjct: 296 NKIPTKMT---LGTMMFTVPPLLIILVGPSVHDMMEN 329 >gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 313 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 265 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302 >gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 299 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRM 72 ++ P AL I++ S+ +G +++A+ +V + V FR+VI +H +S E+I+ + Sbjct: 85 NNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEHQKISFEEAITVV 144 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ + GG+LS++L L++ L D K+ K ++ +++ A +I Sbjct: 145 STLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFI 204 Query: 133 I--GSLP 137 I G +P Sbjct: 205 ILCGVIP 211 >gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 323 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ + + L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614] Length = 304 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R+ + P+A+D++ SV AGL AV + + P+ E RV+ LG S S Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + E+ F + LG +++ L SR +R ++ A+ +A + K Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275 Query: 128 ASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 + +I FC+ ++ P +N++ Sbjct: 276 ITVPLI----FCILPCLFVVVLGPAVLNIM 301 >gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 290 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+K ++ DFPNA+ I V G+ + +A + S +P+ + R V++ + G+S Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRK 113 +++ R +E+ FST I+ ++S G +L++ L + +L + K Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESD-GTHLADTLIKQADLLLNEK 250 >gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 309 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 49/98 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR P+ALD++ SV AGL A+ + + D + EF++V+ LG + Sbjct: 156 IKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIRLGRT 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 E++ + + +V F+ + QLG ++S+ L Sbjct: 216 RREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKIL 253 >gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] Length = 197 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/193 (16%), Positives = 85/193 (44%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59 ++ + K+ +F F +++ I+ +++AG +A+ +SE R + E + Sbjct: 5 LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64 Query: 60 -----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + + + + +S + ++V F TV + + GG+ + + +++ ++ Sbjct: 65 MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ +PF + + T ++ VL +P G +++ + A Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184 Query: 175 GIMVMRLMINFDV 187 + + MI +V Sbjct: 185 AYIWGKKMIKIEV 197 >gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 287 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRS---EFRRVI 56 L+ +R + F AL + S+ AG V +A + DP EFR V Sbjct: 98 LLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVK 157 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G L +++ + + L +++ FS V +V + GG+L E + S+ + ++ +K Sbjct: 158 YRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVK 217 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 ++ L + + A I+ ++PF + +P YM L G++LL + Sbjct: 218 QEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYGGG-GYVLLTIG 268 >gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 306 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 11/155 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K +R + P+ LD+++ SV AGL A+ + + + E + ++ + Sbjct: 149 KRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIRM 208 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + E++ M + ++S F + + QLG N+++ L + +R R+ M+A+ +A Sbjct: 209 GKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEA 268 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + K + LV+F P VL+ Sbjct: 269 MRAPIK-----------MLFPLVFFIFPALFVVLL 292 >gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264] gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 296 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 135 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 188 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 189 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 248 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 249 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 285 >gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] Length = 326 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62 +KR + D FP++LD+++ + AG + ++ + + S + EF V G Sbjct: 169 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIKAG 228 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 + M +Q++S F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A Sbjct: 229 RDKPSVLGEMAERCGVQDISSFVTVL-VQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKA 287 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + A ++ ++P + LV + G M++L Sbjct: 288 NKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322 >gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 322 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + + FP+ALD+++ V AGL + D V + S V + +V+ G Sbjct: 164 RRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHR 283 Query: 124 MEAKASAWIIGS-LPFCVSTLV 144 + S ++ LP + L+ Sbjct: 284 LPVLLSVPLVACMLPVMIGVLM 305 >gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] Length = 313 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ + Sbjct: 153 IKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS +++ + +VS ++ + G +++ +L S +LR ++ M A+ +A Sbjct: 213 GLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK I+ L FC+ +Y Sbjct: 273 ----AKIGTKILFPLIFCIFPSIY 292 >gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] Length = 324 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++ M +Q+VS F TV++ + G ++++AL + +RD++ M+A+ +A Sbjct: 225 GKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 293 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 P LD + SV AGL ++ A+ V + + P+R EF V+ GLS ++++ RM Sbjct: 151 PVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDLKSGLSRADALRRMDDR 210 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++EV+ F + ++G L+ L S R + +A+ QA+ K Sbjct: 211 LRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEKQAMEAPVK 262 >gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 318 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 M+ L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+ Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + QA + K + L++F P + VL+ Sbjct: 270 EEQAAKIALK-----------LLFPLMFFIFPTLLAVLVG 298 >gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 284 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ T P N+ N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270 >gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R ++ P+ALD++V V AG+ + A + + + +++PV + E VI Sbjct: 167 IKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +E++ + + L++V+ T+I G ++S L S +R + +A+ A Sbjct: 227 GKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIA 286 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 287 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 318 >gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 284 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ T P N+ N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270 >gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] Length = 296 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 1/170 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P+ ++ ++ AG S A+A + F++ G S+SE ++ M Sbjct: 122 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMAH 181 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + V F T + + + G L ++++ ++ K + + +A+ S ++ Sbjct: 182 TLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVVS 241 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP + +++ S + I P G + LG+AA I +M++R ++ Sbjct: 242 SLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 290 >gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 324 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 ++KR + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 MEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ M Q+VS F TV++ G ++S+AL + +RD++ M+A+ A Sbjct: 225 GKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 293 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 ++R A+ L LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ +A+ Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKKAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] Length = 227 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV------IVGQSSDPVRSEFRRV 55 K LI + K + +F A+ II + AG + +++ ++ + + EF + Sbjct: 36 KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +++ ++ D+ + Sbjct: 96 NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ P + + +SPG+ N++ G + + L Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 216 IYISKGLLNIEV 227 >gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 325 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62 +KR + D FP++LD+++ + AG + ++ + + +S P +E ++ Q G Sbjct: 167 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAG 226 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ M +Q+++ F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A Sbjct: 227 RDKPSVLNEMAERCGVQDITSFVTVM-VQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKA 285 Query: 122 LSMEAKAS 129 + K + Sbjct: 286 NKLPTKMT 293 >gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + L P+ALD++ SV AGL A+ IV + + + EF V+ LG S Sbjct: 487 ITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMKLGKS 546 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +++ M + L E+ + I ++G ++ L+ S +R R+ +A+ Sbjct: 547 RRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAE 600 >gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] Length = 274 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 11/182 (6%) Query: 11 KFLDDFPNALD----IIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K +D AL+ ++ ++AG P+ +A +V +P ++EF + G Sbjct: 87 KAVDAAAEALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAG 143 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL E++ + L+ + V + + GG+ + + LR+++ A V A Sbjct: 144 LSLDEALGQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAAR 203 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA ++ LP V+ P ++ L NDP G L A L GI ++R + Sbjct: 204 TAEARLSARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263 Query: 183 IN 184 Sbjct: 264 AG 265 >gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 322 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + FP+ALD+++ V AGL + D V + S V + +V+ G Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKA 281 >gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 326 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R + FP+ALD+++ V AG + A+ + + S + EF V + Sbjct: 168 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKA 227 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M +Q+VS F TV+ + G +++EAL + +RD++ M+A+ A Sbjct: 228 GKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAA 287 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A + ++P + LV ++ G N+ Sbjct: 288 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 321 >gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Aromatoleum aromaticum EbN1] Length = 315 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 + LI R + + FP+ALD++ V AGL V A VA + S+ + E V Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + ++ + ++EV F ++ + G +++ +L S +LR R+ +A Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A+A I L F L++F P M VL+ Sbjct: 267 E--------EAAAKIALKLLF---PLIFFIFPSLMLVLLG 295 >gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 314 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D P+ ++ ++ AG S A+A + F++ G S+SE ++ M Sbjct: 139 HDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMA 198 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + V F T + + + G L ++++ ++ K + + +A+ S ++ Sbjct: 199 HTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVV 258 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP + +++ S + I P G + LG+AA I +M++R ++ Sbjct: 259 SSLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 308 >gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str. Hildenborough] gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 284 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61 IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I Sbjct: 125 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 184 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A Sbjct: 185 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 244 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 245 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 276 >gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 323 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIE 57 + H + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L ++L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + QA AK + ++ L F + S L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 319 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ALD++ V AGL A+A + + + F RVI+ LG + Sbjct: 162 ISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQLGKT 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++ M + + E++ F + QLG ++++ L S +R R+ A+ +A Sbjct: 222 RRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEA 278 >gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 299 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQH 60 L + + K ++ P AL IIV ++ +G +++A+ +V + V F RV IE Q Sbjct: 74 LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L S ++++ + + + + ++ + GGNLSE L L++ L D + K ++ Sbjct: 134 L--SFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLM 191 Query: 121 ALSMEAKASAWII 133 +++ + A +I+ Sbjct: 192 SVTANSLAMGFIM 204 >gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] Length = 328 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 72/134 (53%), Gaps = 9/134 (6%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRV 55 K+ + KR + +D FP++LD+++ V AG + ++ + + +S P +E ++ Sbjct: 162 KYWVTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQI 221 Query: 56 IETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRK 113 + Q G ++ M +Q++S F TV+ VQSQ G ++++AL + +RD++ Sbjct: 222 VANQIKAGRDKPSVLNEMAERCGVQDISSFVTVL-VQSQTFGTSIADALRVYAGEMRDKR 280 Query: 114 NMKAKVQALSMEAK 127 M+A+ +A + K Sbjct: 281 VMRAEEKANKLPTK 294 >gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 326 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGL 63 +R + ++ FP++LD+++ V AG + ++ + + S P + E++ V G Sbjct: 169 ERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMKAGK 228 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + M + ++S F TV+ Q G +++EAL S +RD++ M+A+ +A + Sbjct: 229 DKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEKANT 288 Query: 124 MEAK 127 + K Sbjct: 289 LPTK 292 >gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 323 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61 IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I Sbjct: 164 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 223 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A Sbjct: 224 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 283 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 284 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 315 >gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] Length = 303 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R P+A+D++V SV AGL A+ +V + + + EF R + +G+ Sbjct: 151 IAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMRMGIP 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + R + + +++ F + QLG ++S+ L + +R R+ +A+ + Sbjct: 211 RRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQ----EL 266 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 KA +I + F + +Y Sbjct: 267 AHKAPIKMIFPMVFLIFPALY 287 >gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4] Length = 287 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + L KKR + P LD + S+ AGL ++ A++ V + + P+R EF +VI Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + EV+ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250 Query: 120 QALSMEAK 127 +AL K Sbjct: 251 KALEAPVK 258 >gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 300 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 15/135 (11%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL------ 61 R ++ D FP+ LD++V SV AGL + AV + +D + + + T HL Sbjct: 148 REREYADGFPDLLDLLVASVEAGLSLDAAVTRV----TDELERRYPNL--TVHLRFLVLE 201 Query: 62 ---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G + ++ S + +++ +T++ ++G +L + L S+ +R ++ ++A+ Sbjct: 202 LRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAE 261 Query: 119 VQALSMEAKASAWII 133 +AL++ AK + +I Sbjct: 262 EKALALSAKLTVPLI 276 >gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 313 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 +K I R + L P LDII V AGL + A+A V + VR EF+RV+ Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ M + V+ F + ++G NL L + R + ++A Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRA-- 273 Query: 120 QALSMEA 126 + L+MEA Sbjct: 274 EKLAMEA 280 >gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium SSC/2] Length = 252 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 13/168 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57 H + K +F + I S+ AG + +A+ + + + E + +I Sbjct: 63 HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113 + + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++ Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + A ME K I+ +P+ + V +PGY ++L G Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226 >gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L +R + FP+ALD++V AGL + A VA + S + SE V Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 278 EEQAAKLAVK 287 >gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040] Length = 323 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP-VRSEFRRVIETQH 60 I++R FP+ALD+++ V AG + ++ V VG Q+S P + EF V Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQSI-VRVGKELQASYPELAEEFEIVAHEMK 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 AGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286 Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 A + K + +G ++P ++ L+ + G N+ Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321 >gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] Length = 308 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/174 (17%), Positives = 84/174 (48%), Gaps = 1/174 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P A + S+ +G ++ + + + +PV +EF RV G+S ++++ ++ Sbjct: 136 EAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISATDALDDLL 195 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +S + + V + G L++ L+ S ++ +R +K ++ + +A+ SA ++ Sbjct: 196 VRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMV 255 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++P + ++ S + L P G + + A + ++V+R ++ ++ Sbjct: 256 AAMPTGMCAVLALLSADFRRGLAT-PAGAGAVVLGLALNAVALVVIRRIMRVEL 308 >gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 303 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 11/134 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + ++FP+A D+++ V AG+ + A +G+ +D +R + + E H Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTDEIRIKSEALAEELH 192 Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G + +S+ + + E+ F+ +++ + G ++ E+L S LR ++ Sbjct: 193 WTNLEMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252 Query: 114 NMKAKVQALSMEAK 127 M+A+ A + K Sbjct: 253 QMRAEELAAKIPTK 266 >gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 301 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR L P+ALD++ SV AGL A+ + + + + EFRR + LG Sbjct: 149 IKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIRLGTQ 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 E+ M +++++ F + + QLG ++ + L Sbjct: 209 RHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKML 246 >gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] Length = 304 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 8/181 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56 L+++R + F AL + S+ AG V +A + ++ S + EF ++ Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + I L++++ F+ V + GGNL E + S ++ ++ + Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIG 175 ++ + + K + I+ + P + ++ F+SP YM L R M +G+ F+ + Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYEGAGRLIMTIGLTVLFLCLW 294 Query: 176 I 176 I Sbjct: 295 I 295 >gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 306 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 52/112 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +DI+ SV AGL A+ + ++ P+ EFR LG E+++R+ Sbjct: 163 LPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSER 222 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++EV F+ I +LG +L L + S+++R + +A + K Sbjct: 223 TEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVK 274 >gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666] Length = 314 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57 +K+LI +R + + FP+ALD++ V AGL + A+A + +G S + E + V Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + + +V ++ + G +++++L S LR ++ +A Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + QA AK + ++ L F + S LV P ++ + Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQI 302 >gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] Length = 308 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/192 (16%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55 + L ++R + +F + + ++ + AG + +AVA ++ + + EF + Sbjct: 117 EDLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEM 176 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ + L++V+ F+ V + + GG+L E +++ + ++RD+ + Sbjct: 177 ARGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQV 236 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ I+ +P + + TSPG+ +++ G +++ A I Sbjct: 237 QEEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGIS 296 Query: 176 IMVMRLMINFDV 187 +++ R ++ ++ Sbjct: 297 LLLARRILQVEI 308 >gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614] Length = 284 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + +P A+D + +VRAG+ + DA+A + + +P+R F + + Sbjct: 98 RRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTGRF 157 Query: 66 SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E + R+ + P+ + I+ + GG L L NLS LRD +++++A Sbjct: 158 GECLDRLKERLADPVGDRVVEGLRIAREVG-GGELGRLLRNLSSYLRDDARTRSELEARQ 216 Query: 124 ME-------AKASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155 A AS W ++ + F + + SPG + VL Sbjct: 217 AWTVNGARLAVASPWLVLLFMSFQSEVIHRYASPGGVLVL 256 >gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 50/98 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + L+ P+ALD++ + AGL +A+ I + ++ + EF RV+ +G+ Sbjct: 155 IGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMSMGVP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++++ M + +++ F + I LG ++ L Sbjct: 215 RRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVL 252 >gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 302 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57 HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V Sbjct: 144 HLKVKARQLEIFHPLPDILDLVTLCVEAGLSI-DAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + EA A I P L+ F P + V++ Sbjct: 263 E------EAAAKTTIKLIFP-----LIMFIFPALLVVILG 291 >gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 296 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 +KKR P +LD++ SV AGL + A+A +V + P+R E + V++ +G Sbjct: 141 VKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQLKMGK 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E + M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 201 TREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255 >gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 300 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S E+ + + R Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMSRREAFTELRRR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267 >gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] Length = 291 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L ++R + L +FP LD+ V AGL + A+ D P+R E R + G Sbjct: 137 LARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADMRAG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ + L V T ++ QLG +L L + S R + ++A+ AL Sbjct: 197 VPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEKLAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145 K ++ + FC+ + Sbjct: 257 EAPVK----MLFPMVFCIFPCTF 275 >gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 324 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L F + S L+ P ++ + Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 307 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R + + P+A+D++ SV AGL A+ +V + + + EF R++ +G S Sbjct: 154 IKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIRMGQS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ + + +++ F + + QLG ++++ L S+ +R R+ +A+ QA Sbjct: 214 RREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQA--- 270 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 KA +I + F + +Y Sbjct: 271 -HKAPVKMIFPMVFLIFPALY 290 >gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 245 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/196 (16%), Positives = 86/196 (43%), Gaps = 14/196 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51 + +KKR + F + + ++ AG V +A G++ +R E Sbjct: 54 ESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAF----GEALRELRQLYEEDAMIVRE 109 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 FR ++ + SL + ++ + ++++ F+ + S + GGNL + N + + Sbjct: 110 FRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQ 169 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++ + ++ + I+ +P + V SPG+++V+ ++P G +++ + Sbjct: 170 KEETRREINTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLV 229 Query: 172 MLIGIMVMRLMINFDV 187 + + R +++ +V Sbjct: 230 YFLAWLWGRKIVSIEV 245 >gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21] gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21] Length = 302 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57 HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V Sbjct: 144 HLKVKARQLEIFHTLPDILDLVTLCVEAGLSM-DAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262 Query: 118 KVQA 121 + A Sbjct: 263 EEAA 266 >gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 303 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 15/162 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56 + H +R K P+ LD+I V AGL + DA + ++ +DP+ E + Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSM-DAALIKTTETPQFANDPLAKEIKIAT 201 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G ES+ M + +V F T++S + G +LS+AL+ + LR ++ Sbjct: 202 METRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQM 261 Query: 117 AKVQALSMEAKASAWIIGSLPFCV----STLVYFTSPGYMNV 154 A+ EA A I P + + LV P Y+ + Sbjct: 262 AE------EAAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297 >gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4] gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 309 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/182 (18%), Positives = 81/182 (44%), Gaps = 4/182 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR KF F A+ I ++ + +A+ ++ + +P++ E ++++ Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180 Query: 61 LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+SL E++ + PL E S V + Q+ N ++ +S +++R K Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFA--GQMKANTADICQKMSAKIKERIRQNNK 238 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + K++ +I ++ + Y + P Y +LL + ++++ + V Sbjct: 239 ISSFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFV 298 Query: 179 MR 180 R Sbjct: 299 FR 300 >gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 322 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + FPN LD+I+ V AGL + D V+ + ++ V R G Sbjct: 164 RRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGA 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + E++ RM + E+ F+T++ +LG ++ L + +R+++ M+A+ +A Sbjct: 224 TREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKA 281 >gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 11/184 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVI 56 +L K+R + F + ++ + AG + + + + + + + + EFR + Sbjct: 55 NLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILS 114 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + E R +++V F+ V+S + GG L E + + I+RD+ +K Sbjct: 115 DGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQVK 174 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----MLLGVAAAF 171 ++ + I+ +PF + + TSPG+ +V+ G L A A Sbjct: 175 EEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGAL 234 Query: 172 MLIG 175 +L G Sbjct: 235 VLAG 238 >gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 324 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L F + S L+ P ++ + Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] Length = 254 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A + S+ +GL ++ A+ + G+S +PVR+EF G+S +++ +V Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + V + G +L+ L+ + ++ +R + ++ + + + SA ++ Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +P + + S + + P G L VA A + +V+R ++ D Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253 >gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] Length = 327 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 169 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 229 GKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A + ++P + LV ++ G N+ Sbjct: 289 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 322 >gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14] gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14] Length = 295 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 296 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 209 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 210 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 263 >gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 312 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 11/160 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H I R + + FP+ALD+I+ V +GL + DA VG+ + + Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGL-DAALARVGEEMHVRSPTLGEELHLIN 205 Query: 61 LGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L L S R +R + L +EV ++ + G N+S++L R+ D K Sbjct: 206 LELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSL----RVHADSLRTK 261 Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 ++ A AK + ++ L F + S L+ P ++N+ Sbjct: 262 RRLLAEEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301 >gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1] gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1] Length = 319 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGL 63 I +R L +FP LD++V +RAGL + A+ I + +R EF +V+ G Sbjct: 156 INRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREIRAGK 215 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ + M L+ +S F ++ + GG + L + R+ + A++ A Sbjct: 216 SRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEIAA 273 >gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 295 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P + E+ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK I+ L FC+ S V P + V+ Sbjct: 273 ----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] Length = 165 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/134 (18%), Positives = 61/134 (45%) Query: 50 SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 +EF + +LG + + R E FF++VI + + GG LS+ + + + + Sbjct: 28 NEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGI 87 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + +K + ++ + + + ++ +P + +Y+ P + L + G ++ Sbjct: 88 TESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIV 147 Query: 170 AFMLIGIMVMRLMI 183 ++GI ++R MI Sbjct: 148 ISEILGIFIIRNMI 161 >gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268] gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268] Length = 224 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + F L I+ + AG + +A+ + + + + V E + + SL Sbjct: 37 KKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKRSL 96 Query: 66 S------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S E++S+ + ++ FS + V + GG+L + + S I+RD+ + ++ Sbjct: 97 SMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITEEI 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 L+ + I+ +PF + + +SP + +L + G ++ L+ I + Sbjct: 157 ITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIYLS 216 Query: 180 RLMI 183 + +I Sbjct: 217 QKII 220 >gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 306 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 +R + ALD++ V AG DA V V +S+D P+ EF RV+ +G S Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGF-DAALVQVARSTDGPISGEFARVLSEVQIGKSR 209 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE+ + + + L +V F + I +LG ++ L + +R + +A+ +A + Sbjct: 210 SEAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVT 269 Query: 126 AKASAWIIGSLPFCV--STLVYFTSPGYMNVLINDPRGHML 164 K I+ L C+ + V PG + ++ G++L Sbjct: 270 VK----ILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306 >gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii] gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii] Length = 318 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I+ R L FP+ALD++V V AGL + D VGQ + E + + Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSL-DVAITRVGQELQLMHRELSEELRALY 212 Query: 61 LGLSLSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L L S + +R + L+EV F ++ + G ++ +AL + LR R++++ Sbjct: 213 LELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQ 272 Query: 117 AKVQA 121 A A Sbjct: 273 ATEMA 277 >gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 282 EEKANTLPTK 291 >gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108] gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108] Length = 327 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 V D+V + ++ E + G S++ES + + P QE+ FF ++ V Sbjct: 171 VVDSVEEVKPLVHSSIKEELNKATIKLQQGKSVNESFMSLDKKYPYQELKFFHEMLDVAD 230 Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEA----KASAWIIGSLPFCVSTLVYFTS 148 + GG EAL +++ +RK + ++ A +++ + SA + ++PF V Sbjct: 231 KNGGRNIEALESIAVDFEERKVKQMRLYAETIQGTKAFRNSALTVLAIPFIFKFFV---- 286 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 P +L++ P G ++ A +L + ++ + ++D Sbjct: 287 PDAYGMLMSTPLGSIVFVSIACVVLYCYIRIQKLADWD 324 >gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24] Length = 300 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267 >gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797] gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797] Length = 334 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++ +R + P+ALD+++ + G+P+ A+ + + S + EF +I Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFE-IIR 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 S+++++ + + + +V+ S +IS +LG N+S AL + + +R + +A Sbjct: 201 RHADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYM---NVLINDPR 160 + + +K S ++ + FC++ +Y F P + N LI + R Sbjct: 261 EENS----SKTSIKLLFPIIFCMAPPIYILFFGPAVLELRNFLIREHR 304 >gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 324 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +K R K +DFP+ALD++ V AGL + A+ + + SS+ V SE ++ Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLLEMRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++A Sbjct: 221 GFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMRA 276 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 AK + ++ L FC+ P M VL+ H+ Sbjct: 277 EERAAKIALKLLFPLIFCI-------FPALMLVLLGPAMIHV 311 >gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 320 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62 +KR L FP+ALD++V V AG+ + A++ + +S + E G Sbjct: 164 QKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAG 223 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ + LQ++ +T++ + G ++S+AL S +R + +A+ +A Sbjct: 224 MPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAA 283 Query: 123 SMEAK 127 + K Sbjct: 284 KIPVK 288 >gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24] gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24] Length = 291 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 204 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 205 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 258 >gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIETQHL 61 IK R + + FP++LD+I+ V AGL + A+ +V +++ PV + E+ + Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRA 214 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS +++ + + +VS ++ + G +++++L S +LR +++M A+ +A Sbjct: 215 GLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294 >gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis HTCC2601] gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601] Length = 323 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ M + +VS F TV++ S G ++++AL + +RD++ M+A+ +A Sbjct: 225 GKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 325 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R ++ FP+ LD+++ V AG + A+ + + S + EF V Sbjct: 169 VEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +Q+VS F TV+ + G ++++AL S +RD++ M+A+ A Sbjct: 229 GKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYM 152 + K + A ++ ++P + LV ++ G M Sbjct: 289 NKLPTKMTLATMMLTVPPLLVILVGPSAKGIM 320 >gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 295 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] Length = 90 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++E +S ++R+R ++ K+ AL+ + K WI+ S+P + ++ P M +++ Sbjct: 1 MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60 Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G++L+ V A ++GI+++R ++N D+ Sbjct: 61 HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90 >gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] Length = 246 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 43 QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 Q ++ E + +I + + + L +V F+ V +V + GGNL + + Sbjct: 102 QGRSYIQGEIKMIIAGLEMNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMM 161 Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + + + +R ++ ++ + + I+ ++PF + + +PGYMN L + Sbjct: 162 KKMVQTIEERLEVEDEIDTMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGN---- 217 Query: 163 MLLGVAAAFMLIGIMVMRLMI 183 + G+AA M + ++V+ LM+ Sbjct: 218 -VFGIAA--MSVCLIVIFLMV 235 >gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 326 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 4/143 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD+++ V AG + ++ + + S + EF V G + + M Sbjct: 179 FPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDM 238 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131 + +VS F TV+ SQ G +++EAL + +RD++ M+A+ A + K + A Sbjct: 239 GTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298 Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154 ++ ++P + LV ++ G M++ Sbjct: 299 MMLTVPPLLIILVGPSAKGIMDL 321 >gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Cupriavidus metallidurans CH34] Length = 323 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAK 127 + K Sbjct: 281 AKIALK 286 >gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 323 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60 I++R FP+ALD+++ V AG + A+ V VG+ S + EF V Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQAI-VRVGKELRASYPELAEEFEIVAYEMK 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 AGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286 Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 A + K + +G ++P ++ L+ + G N+ Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321 >gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi] Length = 281 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 +IK + + + D P +D++ +V+ G+ + A V++ + + + R+I Sbjct: 126 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + + Sbjct: 186 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 279 >gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 324 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 A AK + ++ L FC+ + +V P ++V Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311 >gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147] gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786] Length = 318 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I R ++DFP+ALD++ + AGL + + + + S V E ++ Sbjct: 157 IASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLLEMRS 216 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++ + +++ FS ++ + G ++ +L LS LR ++ M+A+ +A Sbjct: 217 GFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERA 276 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L FC+ + L P ++++ Sbjct: 277 ----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 307 >gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP] gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP] Length = 290 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 +IK + + + D P +D++ +V+ G+ + A V++ + + + R+I Sbjct: 135 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + + Sbjct: 195 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 254 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 288 >gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 326 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 309 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + L+ P+ALD++ + AGL A+ I + ++ + EF RV+ +G+ Sbjct: 155 IRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMSMGVP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++++ M + +++ F + + LG ++ L Sbjct: 215 RRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVL 252 >gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191] gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191] Length = 296 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLG 62 I+KR L +F +D+ + +GL A I+ + + E +++ LG Sbjct: 139 IQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNEVKLG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 S E++ R+ +QE+ F +I +LG +L + L N S LR R+ KA+ Sbjct: 199 YSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254 >gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 326 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 305 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 7/154 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + +R + FP+ALD+++ V AG + + + + S + EF V Sbjct: 150 VAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEMKA 209 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 210 GKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEEAA 269 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A ++ ++P L+ +P MN+ Sbjct: 270 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 300 >gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168] gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168] Length = 283 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/159 (20%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVI 56 K +I R + +D P +DI+ V++G+ + + + + ++++ + + R ++ Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYL-AENTETINPDISVLLARTIM 182 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + G+S E++ + +P QE+ ++ + + G ++ L +LSR +R+ + + Sbjct: 183 KMEVSGMS--EALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLA 240 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + S+ AK S +I + F + LV PG + ++ Sbjct: 241 IDEKISSLAAKMSLPMIICIMFPI--LVLVAGPGVIRIV 277 >gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Query: 4 LIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 L++ A+ DD P+ LD++ V AGL A+ + + + P E R + Sbjct: 134 LLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQM 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G+ E+ ++ R ++VS F + + +LG + + L ++ +R A+ Sbjct: 194 DMGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARR 253 Query: 120 QALSMEAKAS 129 +A KA+ Sbjct: 254 KAAKAVPKAT 263 >gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter denitrificans OCh 114] gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter denitrificans OCh 114] Length = 355 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 195 VDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 254 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A Sbjct: 255 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAA 314 Query: 122 LSMEAKAS 129 + K + Sbjct: 315 NKLPTKMT 322 >gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 322 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L ++ ++ IS +LG ++ L S RD++ +A Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 280 EEQAAKLAVK 289 >gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 287 Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + L + R + + P LD + ++ AGL +S A+A V + D P++ EF +VI Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---ANLSRILR----DR 112 G+S +++ M + + E++ + ++ + G +L L A+ R+ R ++ Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250 Query: 113 KNMKAKVQ 120 K M+A ++ Sbjct: 251 KAMEAPIK 258 >gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 307 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 15/164 (9%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P+ +D++ SV AGL A+ + + + EF ++++ +G E Sbjct: 157 RKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIKIGRPRLE 216 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + + ++S F+ + + QLG + + N+ R+ D+ MK + A M K Sbjct: 217 ALRDLSRRLDVDDLSAFAGAVILADQLGIS----IGNILRVQSDQIRMKRRQAAEEMAMK 272 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 A ++ +P +V F P VL+ G ++ ++ AF Sbjct: 273 APVKML--IP-----MVLFIFPAIFVVLL----GPAVIQISKAF 305 >gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 295 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 KKR L P LD+I +AGL ++ A+A V + + EF R++ G+S Sbjct: 143 KKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREMRTGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ M + + + + ++ LG +L++ L+ +S R + A + L+M Sbjct: 203 RMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHA--EKLAM 260 Query: 125 EA 126 EA Sbjct: 261 EA 262 >gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM 2661] gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 299 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++ Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GG+LS++L L++ L D K K ++ +++ A Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIG 202 Query: 131 WII--GSLP 137 +II G +P Sbjct: 203 FIILCGVIP 211 >gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 323 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 D FP++LD+++ V AG + ++ + + S + E++ V + G + ++ Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231 Query: 71 RMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M +Q++S F TV+ VQSQ G ++ +AL + +RD++ M+A+ +A + K + Sbjct: 232 EMGDRCGVQDISSFVTVL-VQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMT 290 Query: 130 AWIIG 134 +G Sbjct: 291 LCTMG 295 >gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 320 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 +++R ++ + FP+ +D+++ AG+ + + + + + P S+ +++ + Sbjct: 167 VRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A Sbjct: 227 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEKA 286 Query: 122 LSMEAKASAWII 133 ++ AK S ++ Sbjct: 287 HALPAKMSVPVV 298 >gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599] gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 66/138 (47%) Query: 45 SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 S+ V E+RR++E + L ++R +V + +T++ +Q ++GG++++ L Sbjct: 152 SEIVLEEYRRIVELLRAQVPLEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDL 211 Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + + R+ + +A + A ++ +PF +Y +P + + L G L Sbjct: 212 AASSILRRRQSLRRQKAAMAQIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFL 271 Query: 165 LGVAAAFMLIGIMVMRLM 182 + + A +LIG +R + Sbjct: 272 ILGSLASILIGGEAIRFV 289 >gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus voltae A3] gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3] Length = 294 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 L + + KF + P AL I+V S+ +G V +++ I+ V F ++I Sbjct: 73 LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +S+ + + + +I + GGNL+E+L L++ L D N+K Q L Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKN--QLL 190 Query: 123 SMEAKASAWIIGSLPFCV 140 S+ + + +G + C+ Sbjct: 191 SVASNGLS--VGIIILCI 206 >gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 256 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRY 75 P L ++ +V AG+ + +A V+ G P + FRRV+ + GL++ E++ R+ Sbjct: 42 PQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEALWRVASE 101 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 +P F+ +++ ++ G L E L +R Sbjct: 102 LPSPNFRRFALIVAEGARSGARLGEVLGVAAR 133 >gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 295 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 57/129 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + S P E R + Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S E+ ++ + ++VS F + + +LG + + L ++ +R A+ + Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKAS 129 A KA+ Sbjct: 254 AAKAVPKAT 262 >gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 285 Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKRTA +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S+ ++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213 Query: 120 QA 121 +A Sbjct: 214 EA 215 >gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens] gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens] Length = 200 Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60 + KR + L+ IV V AG V A+ Q P+ E R+I+ Sbjct: 47 VDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLE 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S +S + +QEVS F+T + + + GG + + AL +LSR L +++ + Sbjct: 107 GGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRT 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + E +S + + + +V +P +M Sbjct: 167 RG---EQASSKLVFPMMVIFMIVIVLVGTPAFM 196 >gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein [Shewanella sediminis HAW-EB3] gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella sediminis HAW-EB3] Length = 321 Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ + +R FP+ALD++V AGL + A VA + S + SE V Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ +++ L+++ ++ IS +LG ++E L S R+++ +A Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 279 EEQAAKLAVK 288 >gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA 2018] Length = 396 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AG + ++++++ D + RR+I+ G+ SI + V+Y FF +++ Sbjct: 74 AGFNICESLSIMY----DKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPYFFKSML 129 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144 + + GNLSE NL +D+ + K++ A + A A+ I L F VS ++ Sbjct: 130 FIGEE-SGNLSEVFRNLGEYYKDQWKTEEKIKNATTYPAIVFAFTIIILVFLVSKVI 185 >gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] Length = 282 Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIET 58 K+++ R K D P +D++ V++GL + ++ + VG +D R+++ Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L ++ + + +P +EVS + + G ++ E L LS +R+ + +K + Sbjct: 186 IEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTE 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + AK S ++ L F ++ +PG M V+ Sbjct: 245 EIIGKLSAKMSIPLV--LFFMFPVVIIIAAPGIMRVM 279 >gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 286 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64 +K+ A+F + P LD+ +++ LPV+ A+ I +S D + S E R + LG S Sbjct: 135 QKKKAQFESEIPRFLDLFQTAIKINLPVATAIK-ITAESIDGILSEELLRALVVTELGTS 193 Query: 65 -LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +S+ + + + S F I Q G +++E++ SR ++ + AK QA Sbjct: 194 NWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQA-- 251 Query: 124 MEAKASAWII 133 AK ++ I+ Sbjct: 252 --AKTTSLIL 259 >gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] Length = 326 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] Length = 298 Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 ++ L +RT + P LDII ++ AG ++ A+ V + + P+ E RRV+ Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ + + + +S + I + G +L L + R+ + M+A+ Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259 Query: 120 QALSMEAK 127 AL K Sbjct: 260 MALKAPVK 267 >gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 330 Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54 K+ I KR A+ ++ FP+ALD+++ V AG + A+ + + S + EF Sbjct: 156 KYWINKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFEL 215 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G + + M + +++ F TV+ + G ++++AL + +RD++ Sbjct: 216 VSHEIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRV 275 Query: 115 MKAKVQALSMEAK 127 M+A+ +A + K Sbjct: 276 MRAEEKANKLPTK 288 >gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] Length = 259 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67 +F L + S+ AG + +AV + D +R+ + + V+E + GL +++ Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135 Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119 I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A ME K I+ +PF + V +PGY VL + P G +L Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236 >gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] Length = 259 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67 +F L + S+ AG + +AV + D +R+ + + V+E + GL +++ Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135 Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119 I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A ME K I+ +PF + V +PGY VL + P G +L Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236 >gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 318 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 M L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+ Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A + K + L++F P + VL+ Sbjct: 270 EELAAEIALK-----------LLFPLMFFIFPTLLAVLVG 298 >gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 52/116 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KKR + L +FP +++ S+ AG DA+ + ++ + E R + Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G SL +++ M R +Q + F +++ G LSE L + +R+ K Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRK 272 >gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CMR15] Length = 315 Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R + + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ + Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRA 214 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL +++ + + +VS ++ + G +++++L S +LR +++M A+ +A Sbjct: 215 GLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294 >gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 324 Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 6 KKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 K RT + L D P+ALD++V V AG+ + A+ + + SS + E ++ Sbjct: 165 KVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELR 224 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + SES+ + + L++V+ T+I G +++ L S +R + +A+ Sbjct: 225 AGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEI 284 Query: 121 ALSMEAKASAWIIGSLPFCV 140 A M K ++ L FC+ Sbjct: 285 AAKMPVK----LLFPLVFCI 300 >gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 286 Score = 40.8 bits (94), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAGL + +AVA + + D +R FRR + + + + S+ + R Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120 + + + ++GG +L L LS LR+ ++A+++ Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELE 215 >gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 313 Score = 40.8 bits (94), Expect = 0.078, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K L FP +++ +V AG + A+ I + EF + + H G Sbjct: 162 INRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIHAGTP 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMK-AKVQ 120 + +++ M M + ++ F I V ++ G L++ L + ++ +RD R+ M+ A + Sbjct: 222 MVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRDASKRELMEVAGKR 281 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 +SM + G LP T+V+ PG Sbjct: 282 EISMLVPV---VFGILPL---TIVFAVFPG 305 >gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] Length = 326 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIE 57 + + R + FP+ALD+++ V AG + D V VG+ S + EF V Sbjct: 165 RRRVDSRKEEITRGFPDALDMMLVCVEAGQSL-DQCIVRVGRELRASYPALAEEFEMVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIG 134 + A + K + +G Sbjct: 284 EEAANKLPTKMTLATMG 300 >gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 310 Score = 40.8 bits (94), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + P+ALD++ SV AGL A+ + QS+ + EF +++ H+G Sbjct: 157 IRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECHMGKP 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNL 98 E++ M + + ++S F I + LG GN+ Sbjct: 217 RREALRDMADRVDVDDLSTFCGSIILADTLGISIGNI 253 >gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 324 Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A AK + ++ L FC+ P M VL+ H+ Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311 >gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX] gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX] Length = 273 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + P+ LD++ +V AGL A+A + + SEF+ + LG S Sbjct: 118 RKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTSR 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALS 123 ++ + + + + F T + +LG LS+ L LS +R D + ++ K Q L+ Sbjct: 178 RDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHLN 237 >gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 299 Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++ Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GG+L+++L L++ L D K K ++ +++ AS Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVT----ASG 198 Query: 131 WIIGSLPFC 139 IG + C Sbjct: 199 LAIGFIILC 207 >gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 324 Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A AK + ++ L FC+ P M VL+ H+ Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311 >gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 291 Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + T++ L P+ +++I +V AG PV A+ V S P+ R + H G SL Sbjct: 142 RATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSL 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 ++S + Q VS F+ + + GG L++ L N Sbjct: 202 PAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHN 240 >gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2083] gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium HTCC2083] Length = 323 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 I R + FP++LD+++ V AG + ++ + + S P + E+ V + Sbjct: 167 IDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+V+ F TV+ + G +++EAL + +RD++ M+A+ +A Sbjct: 227 GKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 286 Query: 122 LSMEAKAS 129 + K + Sbjct: 287 NKLPTKMT 294 >gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] Length = 327 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 167 VDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A Sbjct: 227 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAA 286 Query: 122 LSMEAKAS 129 + K + Sbjct: 287 NKLPTKMT 294 >gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 304 Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAV---AVIVGQSSDPVRSEFRRVIETQHLGL 63 ++TA F P+ LD++ V AGL + A+ A + + P+ +EF VI G Sbjct: 151 RKTAIF-HALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGR 209 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SE++ + L ++ +++ +LG +L + L S LR ++ A+ +A Sbjct: 210 PRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERA-- 267 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK + ++ L FCV P +M VL+ Sbjct: 268 --AKTAVKMLFPLTFCV-------FPAFMVVLL 291 >gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70] Length = 284 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + K + D P +D++ +V+ G+ + A VA+ + + + R+I Sbjct: 129 ILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L LS+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 189 LT-GLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEEK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M V N Sbjct: 248 LGTLSAKMSIPLILFIMFPIIILIL--APGIMRVFPN 282 >gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPV-RSEFRRVIETQHLG 62 K+R D P +D++ SV AGL A+ IV ++ +D V EF V++ +G Sbjct: 104 KRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKIG 163 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS---RILRDRKNMKAKV 119 S ++++ M + + E++ F V+ G ++S+ L + S R+ R + KA Sbjct: 164 SSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAGA 223 Query: 120 QA 121 QA Sbjct: 224 QA 225 >gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 327 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 +++R FP+ LD+++ V AG + A+ + + SS P + EF V Sbjct: 169 VEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ + +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 229 GKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMN 153 + K + A ++ ++P + LV ++ G M Sbjct: 289 NKLPTKMTLATMMLTVPPLLIILVGPSAKGIME 321 >gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 295 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + R Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + V + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64 + + KF + P AL +++ S+ +G V DA+ ++ V F +++ LS Sbjct: 77 ESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLS 136 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +SI + + + +I + GG L+E L L++ L D +N+K ++ +++ Sbjct: 137 FEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTA 196 Query: 125 EAKASAWII--GSLPFCVSTLVYFTSPGYMNVL 155 A II G +P + GY+N + Sbjct: 197 NGLAVGLIIICGVIPATAGII-----GGYLNAI 224 >gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] Length = 238 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 83 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 197 >gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + R Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + V + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 293 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 P LD + +V AGL ++ A+ V + D +RSEF V+ GL+ ++++ R Sbjct: 151 PVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALRRFDER 210 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++E++ F + ++G L+ L S R + +A + L+MEA Sbjct: 211 QDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRA--EKLAMEA 259 >gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] Length = 161 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 49/95 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R A+ L +FP+ +++ +VRAG + A+ + S + EF R++ G+ Sbjct: 3 ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 L+E+++ R + + F+ ++V + G L+ Sbjct: 63 LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLA 97 >gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 50/114 (43%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVSRRQAFEELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + E L ++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262 >gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C] gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C] Length = 292 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + G+ P E R ++ +G+S ++ + R Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVSRRQAFDELRRR 204 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114 ++V+ F T + +LG + E L ++ +R D +N Sbjct: 205 NDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQN 245 >gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] Length = 316 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 ++ R ++ FP++LD+++ V AG + ++ + + + P + EF V + Sbjct: 161 VEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKA 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M + ++S F TV+ +Q G ++S+AL + +RD++ M+A+ A Sbjct: 221 GKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAA 280 Query: 122 LSMEAK 127 + K Sbjct: 281 NKLPTK 286 >gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 296 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255 >gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1] gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 351 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 47/105 (44%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL I + AG+ +++A+ + P+ EF VI Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 G S E++ + M + VS I + GGNL+E L L+ Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLA 269 >gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44] Length = 303 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 11/134 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + ++FP+A D+++ V AG+ + A +G+ ++ +R + + E H Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTEEIRIKSEALAEELH 192 Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G + +++ + + E+ F+ +++ + G ++ E+L S LR ++ Sbjct: 193 WTNLEMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252 Query: 114 NMKAKVQALSMEAK 127 M+A+ A + K Sbjct: 253 QMRAEELAAKIPTK 266 >gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] Length = 401 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%) Query: 27 VRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAG+PV +A ++ Q+ S P++ +V E G++ S++ + + PL V+ Sbjct: 75 IRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPLLFVNMMR 134 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST-LV 144 + GN+ + L L+ L + N+K K+Q+ A I+ L V L+ Sbjct: 135 A-----GEATGNVDDTLDRLASTLEKQYNIKKKIQS----AMTYPAILSLLTLVVGMFLM 185 Query: 145 YFTSPGYMN 153 F P +M+ Sbjct: 186 VFIVPTFMD 194 >gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] Length = 191 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQHLGLSLSES 68 F N L ++ S++AG ++++ + + + ++P+ + RR+I+ L ++L + Sbjct: 49 FQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIALEQL 108 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+E F+ VI + GGN+ E L + L+ + + + +++ L Sbjct: 109 FMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL 162 >gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 +++R K FP++LD+++ V AG + ++ + + +S P + EF V + Sbjct: 164 VEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKA 223 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q++S F TV+ +QSQ G ++++AL + +RD++ M+A+ Sbjct: 224 GKDKEKVLRDMGTRCGVQDISSFVTVM-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEA 282 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P + LV + G +N+ Sbjct: 283 ANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNM 317 >gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] Length = 301 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/193 (19%), Positives = 84/193 (43%), Gaps = 14/193 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIET 58 I+KR + +F + + + S+ AG +A + S + E + VI Sbjct: 113 IEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIR- 171 Query: 59 QHLGLSLSESISRMVRYMP----LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 GL + E I +++ M ++E+S F+ V+ V + GGN+ + + + + Sbjct: 172 ---GLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKME 228 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++Q + K I+ +PF + + + Y+++L + G +++ + A ++ Sbjct: 229 VELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSIL 288 Query: 175 GIMVMRLMINFDV 187 R MI V Sbjct: 289 SAAWSRKMIRIGV 301 >gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 305 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 ++++ ++ + FP+ +D+++ AG+ + + + + + P S+ +++ + Sbjct: 151 VREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 210 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A Sbjct: 211 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKA 270 Query: 122 LSMEAKAS 129 ++ AK S Sbjct: 271 HALPAKMS 278 >gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 285 Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR+A +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S++++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213 Query: 120 QA 121 +A Sbjct: 214 EA 215 >gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 270 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 8/192 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVS-------DAVAVIVGQSSDPVRSEFRRV 55 +L+++R F AL + S+ AG V D + ++ + V E + Sbjct: 80 YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G + E++ R ++++ F+ V + + GG+L E + S ++ ++ + Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + + A + + P + FTSP YM L + G ++ GVA I Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258 Query: 176 IMVMRLMINFDV 187 +M +I+ V Sbjct: 259 AWLMLKIIDIRV 270 >gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681] gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 290 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60 ++KR + L + P L ++ V AG V A+ V + P+ E R+ + Sbjct: 137 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTVAEWE 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114 G S ++ + + +QE++ F+T + + + GG + AL LS+ L ++ Sbjct: 197 SGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRT 251 >gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 320 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGL---PVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K R + FP+ L++IV + AGL P VA + S + E +++ + Sbjct: 165 KNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMT 224 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++M +PL E+ F+ + + G S A+ L I+ R N + + Sbjct: 225 NDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTL--IIEQRGN-----RLM 277 Query: 123 SMEAKASAW-IIGSLP--FCV--STLVYFTSPGYMNVLIN 157 ++E KA+ ++ +LP FC+ + V P ++VL N Sbjct: 278 AIEEKAARLPVLMTLPLIFCIMPAVFVVLVGPAVLSVLDN 317 >gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 295 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 53/125 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257 Query: 125 EAKAS 129 KA+ Sbjct: 258 VPKAT 262 >gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] Length = 320 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ I+KR+ K P+ALD+ V AGL + DA V + P E Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSL-DAALARVSREIGPAAPEL-----ADE 213 Query: 61 LGLSL---------SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 LGL+ E++ + R + +V + + G L++AL L+ RD Sbjct: 214 LGLTAVELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRD 273 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLIN 157 + MKA+ +A + A + +I F + L V P + VL Sbjct: 274 TRMMKAEEKAARLPATLTVPMIA---FILPPLFVVLIGPAIVQVLTT 317 >gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74] Length = 300 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/127 (21%), Positives = 57/127 (44%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +++R A P+ LD++ V AGL A+ + + P E R + +G Sbjct: 141 QAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S ++ + R ++V+ F + + +LG ++E L ++ +R +A+ +A Sbjct: 201 VSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAA 260 Query: 123 SMEAKAS 129 KA+ Sbjct: 261 KTIPKAT 267 >gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 295 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 54/125 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + + L ++ +R A+ +A Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257 Query: 125 EAKAS 129 KA+ Sbjct: 258 VPKAT 262 >gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 324 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 + R K +DFP+ALD++ V AGL + DA + V + SD V E ++ Sbjct: 161 VAARQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSDVVAGELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDLLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 A AK + ++ L FC+ + +V P ++V Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311 >gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 617 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +++ F N L I S G+P+ A++++ + P+R E R++ GL LS Sbjct: 409 RYLRYIPIFFNRLATINES---GVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSR 465 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 + R + + +V+ T+++ + GNL+E L Sbjct: 466 AFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVL 500 >gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile QCD-76w55] Length = 317 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 K L KR K + + II+ + +S ++ + Q S+P+ SE ++ + Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS--EALANLSRILRDRKNMKA 117 LG+ + E +S + R + + FS V S L S + L D + +K Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRGHM-LLGVAAAFML 173 ++ M ++I + F + L+ F S GY++ +IN+ G M L G+ + +L Sbjct: 247 DLRKEIMGPVRESYI---MVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILL 303 >gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] Length = 295 Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHL 61 + + KF + P AL ++ S+ +G V++A+ ++ + V EF + +IE ++ Sbjct: 76 EGKIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYS 135 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +I+ M +++ +I + Q GG L+ L L++ L D N+K ++ Sbjct: 136 FEDAMTTITENSDSMVFRQIG--RLIIENRKQ-GGELASTLRTLAKTLEDLMNIKQQL-- 190 Query: 122 LSMEAKASAWIIGSLPFC 139 + A+ ++G + C Sbjct: 191 --LSTTANGLVVGLVILC 206 >gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 301 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 69/129 (53%), Gaps = 7/129 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V + F++V+ E Q + S E+++ Sbjct: 87 NNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQKI--SFEEAMT 144 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GGNL+++L L++ L D + K ++ +++ A Sbjct: 145 IVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVG 204 Query: 131 WII--GSLP 137 +II G +P Sbjct: 205 FIILCGVIP 213 >gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201] gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 285 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +RTA + +P+ +D + ++RAG+ + +A+ + + +P+R F R L Sbjct: 100 RRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYRASGQLH 159 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125 S++ + + + + V ++GG +L + L LS LR+ + +++++A Sbjct: 160 GSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEARQSW 219 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 +A + + P+ + L+ T P + N P G ++L Sbjct: 220 TVNAARLSVAAPWLILGLMA-TQPAAVQA-YNTPAGAVVL 257 >gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E] gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 292 Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQ 59 ++K++ + D P +D++ V+ G+ ++ A+ + + D R + + + Sbjct: 138 ILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRKAE 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G L ++ + +P +E+ F+TV+ G ++ L LS +R+ + + + Sbjct: 198 IIG--LPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEE 255 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 Q ++ AK S +I + F + L+ +PG M V N Sbjct: 256 QLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVFPN 291 >gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] Length = 353 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L + + AG+ +++A+ + P+ EF +I H G S ++++R M Sbjct: 182 PYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMHGGTSFEDALTRFEERM 241 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS 106 + VS I ++ GGNL++ L L+ Sbjct: 242 ASENVSRVVKQILRATRFGGNLADILYKLA 271 >gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 306 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 17/187 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVS--------DAVAVIVGQSSDPVRSEFRRVIE 57 ++R A F + P +D +R + AG + DA V P+ R +E Sbjct: 124 QQRRAIF-ESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVF-----QPLTFRLRSAVE 177 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L + +R+ R L VS + ++ G ++ L ++ LR ++ ++ Sbjct: 178 SGRDYTGLFDDFARLYRVPSLVLVSI---ALRTSARFGSSIRPVLQQVANSLRSQQELRR 234 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + A + E + +A LP ++ + + Y +VL+ GH +L +A IG++ Sbjct: 235 EFLASTAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVV 294 Query: 178 VMRLMIN 184 ++ M+ Sbjct: 295 IIWRMVQ 301 >gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] Length = 318 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLS 64 R + FP++LD+++ V +G + A+ + + + EF V G Sbjct: 167 RQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKD 226 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + ++S F +V+ + G ++EAL S +RD++ M+A+ +A ++ Sbjct: 227 KKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTL 286 Query: 125 EAKASAWIIGSLPFCVSTLV 144 K + +G++ FC+ +L+ Sbjct: 287 PVKMT---LGTMVFCLPSLL 303 >gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 295 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 50/114 (43%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + E L ++ +R A+ +A KA+ Sbjct: 209 NDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262 >gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 303 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/130 (17%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + + E+ F+ +++ + G ++ +++ S LR ++ M+A Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 257 EELAAKIPTK 266 >gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 331 Score = 38.9 bits (89), Expect = 0.33, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61 I KR + + FP++LD+++ V AG + A VA + + EF V Sbjct: 171 IDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIKA 230 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120 G + M + +V+ F TV+ +QSQ G ++++AL + +RD++ M+A+ + Sbjct: 231 GKDKITVLKDMAERCGVGDVTSFVTVL-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEK 289 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A + K + +G++ F V L+ Sbjct: 290 ANVLPTKLT---LGTMMFTVPPLL 310 >gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 295 Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 48/106 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ ++ R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQLRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++VS F T + +LG + + L ++ +R A+ +A Sbjct: 209 NDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREA 254 >gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] Length = 310 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---L 61 I +R FP+ +D++V V AGL + DA VG+ E R I H L Sbjct: 155 ISQRKQACSSGFPDMMDLMVACVEAGLSL-DASVQRVGEE-----LELRHPIIAGHMRTL 208 Query: 62 GLSLSESISRMVRY------MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L L SR + + + + E +T++ ++G +L + L S +R R+ + Sbjct: 209 SLELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRIL 268 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A+ +A+++ AK +LP L+ F P + VLI Sbjct: 269 MAEEKAMALPAKM------TLP-----LIIFVFPVLLGVLI 298 >gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] Length = 289 Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 8/126 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR+ + L DF N + + AGL + DA A + + + E + ++ G+S Sbjct: 140 IKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGVS 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVI-----SVQSQLGGNLSEALA---NLSRILRDRKNMK 116 +E+I + E+ F++ I S+L L E A NL R L R+ K Sbjct: 200 ETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTALLQEQSAETWNLKRQLVKREGEK 259 Query: 117 AKVQAL 122 A + L Sbjct: 260 ASSKLL 265 >gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/127 (22%), Positives = 67/127 (52%), Gaps = 3/127 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62 +++ ++ + FP+ +D+++ AG+ + + + + + P S+ +++ + G Sbjct: 168 REKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSLELRAG 227 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A Sbjct: 228 RSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAH 287 Query: 123 SMEAKAS 129 ++ AK S Sbjct: 288 ALPAKMS 294 >gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304] gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 651 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L + + +G+P+ A+ +I + P+R E ++ G+SLS+++ R + Sbjct: 437 PIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGISLSDALVRFANRL 496 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEAL 102 + E+S T+++ + GN++E L Sbjct: 497 KIFEISRTMTLLNEALKSTGNVTEVL 522 >gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] Length = 315 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEVAAKIPVK 284 >gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 292 Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 56/121 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + D P+ LD++ +VR+G+ AV + P+ E R I + LG++ Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + V+ F + +LG L++AL ++S +R + + + A + Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261 Query: 127 K 127 K Sbjct: 262 K 262 >gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] Length = 285 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + K + D P +D++ +V+ G+ + A VA+ + + + R+I Sbjct: 130 ILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + LS ++ + +P EV F +V+ G ++ L LS +R+ + + + + Sbjct: 190 IT-GLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEEK 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M V N Sbjct: 249 LGTLAAKMSIPLILFIMFPIIILIL--APGIMRVFPN 283 >gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 326 Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54 K+ + +R A+ ++ FP++LD+++ V AG + ++ + + S + EF Sbjct: 161 KYWVTRRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDI 220 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G + + M +Q++S F TV+ + G +++EAL + +RD++ Sbjct: 221 VAHEMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRV 280 Query: 115 MKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 M+A+ A + K + A ++ ++P L+ P N++ Sbjct: 281 MRAEEAANKLPVKMTLATMMLTVP---PLLIILVGPSVKNIM 319 >gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 647 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 53/97 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + L P L+ + + +G+P+ A+A+I + P++ E +++ G+SL Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++++ R + + E+S T+++ + GN++E L Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVL 522 >gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa SC2] gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa SC2] Length = 292 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET---QH 60 ++KR + L + P L ++ V AG V A+ V + +D V +R +++T Sbjct: 139 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTVGEWE 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114 G S ++ + + +QEV+ F+T + + + GG + AL LS+ L ++ Sbjct: 199 SGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRT 253 >gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 319 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 11/149 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K R + P+ LD + +++AG+P+ A+ +V P+ E +R LG+ Sbjct: 159 LAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELELGV 218 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E+ R+V +E+ + S+LG ++ ++ +R + K K +A Sbjct: 219 PREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEKA-- 276 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 AKAS P + +PG M Sbjct: 277 --AKAS-------PKVTLVTSFIITPGVM 296 >gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 245 Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 5/103 (4%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L +V F+ V + + GG L + + S ++RD+ ++ ++ ++ + I+ +P Sbjct: 136 LDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQEEIATMTAAKQFEQKIMNLIP 195 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG-----VAAAFMLIG 175 F + V +SPG+ +++ G ++ AAA++L G Sbjct: 196 FFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAYVLAG 238 >gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] Length = 321 Score = 38.5 bits (88), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGLSLSESISRM 72 FP++LD+++ V AG + ++ + + S P + EF V + G + + M Sbjct: 177 FPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEAKAGKDKNTVLKDM 236 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + +++ F TV+ SQ G ++++AL S +RD++ M+A+ +A + K Sbjct: 237 SDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEEKANKLPTK 291 >gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437] Length = 306 Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 59/130 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR + + P+ +D++ +++AG+ + A+ V ++ P+ E R+ + Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ E+ + LG +SE A + +R+ + KAK Q Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262 Query: 121 ALSMEAKASA 130 A E K SA Sbjct: 263 AGKSEPKISA 272 >gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 313 Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ES+ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 273 EEIAAKIPVK 282 >gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] Length = 315 Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L + L LS LRD ++++ Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ T P ++ N G ML+ AA I + Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLMA-TQPA-ARMVYNSFAGAMLMIAGAA---ISLAAY 298 Query: 180 RLMI 183 RLM+ Sbjct: 299 RLML 302 >gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 402 Score = 38.1 bits (87), Expect = 0.51, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P++ A+ + Q ++P +R+ V G S S+++S FST+ Sbjct: 78 AGIPLTRALFTLSKQIANPTLRNAVSDVARNVEGGQSFSDALS--------AHPGIFSTL 129 Query: 88 ---ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++ ++GG LSEAL+ LS L K+++ V++ S A ++G V ++ Sbjct: 130 FVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHVRSASFYPIA---VLGFAGVVVLAML 186 Query: 145 YFTSPGYMNVLINDPRGHML 164 YF P +M P G +L Sbjct: 187 YFLVPVFMQFF---PEGMVL 203 >gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 292 Score = 38.1 bits (87), Expect = 0.53, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 7/154 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 IK R + PN LD+++ SV +G + A+ I+ + DP+ E R LG Sbjct: 137 IKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQMQLGR 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++ M + + +++ I +LG ++ + L R+ D + K A Sbjct: 197 KRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLL----RVQGDMQRNKRFSLAEK 252 Query: 124 MEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + +A+ II + FC+ S L+ P + VL Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIFGPLALQVL 286 >gi|324330324|gb|ADY38542.1| TrdJ [Streptomyces sp. SCSIO1666] Length = 497 Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKAK 118 +GL +S IS +P QEV S +S QLGG++ AL N + + DR + Sbjct: 377 VGLVISPCISAATYRVPPQEVGVVSAFVSTSQQLGGSIGTALLNAIATSVTADRIAGGGR 436 Query: 119 VQALSMEAKASAWIIGSL 136 + +EA + + SL Sbjct: 437 AERAVIEATVHGYAVASL 454 >gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b] gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b] Length = 405 Score = 38.1 bits (87), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 7/120 (5%) Query: 27 VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAG+P+ A +++ V S+ ++ +V + G++ SE+I + R +FFS Sbjct: 77 IRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKKHPRVFS----NFFS 132 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCVSTLV 144 + +++ + GNL EAL + L+ + ++K KV AL+ S IG + F + +V Sbjct: 133 S-MALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSIVAIGVVAFLMVNVV 191 >gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 295 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKHE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + V + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM 14684] gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM 14684] Length = 275 Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/107 (24%), Positives = 49/107 (45%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P+ LD++ ++ AGLP+ AV + +++ + E+R V LG+ ++ + Sbjct: 136 ELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALVALAE 195 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 P V + ++ G L EALA +R R + + QA Sbjct: 196 RCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQA 242 >gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist] gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist] Length = 298 Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVL---- 201 Query: 61 LGLSLSESISRMVRYM 76 +G+S +++ R ++ M Sbjct: 202 IGVSSGDTLERCLKRM 217 >gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] Length = 294 Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP--VRSEFRRVIETQHLGLSLSESISR 71 P+A+D++V SV AGL + A+ + VG ++ +P R R E Q G + ++R Sbjct: 151 PDAIDLLVISVEAGLALDRAL-LRVGHYLEALEPGLARQFLRTHAEIQMRG-DQASCLAR 208 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + L E+ + + + Q G L+E + +S+ R + + + QA S+ K + Sbjct: 209 LAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT-- 266 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 +I + LV +P +N+LIN R Sbjct: 267 LIQMALIMLPMLVLIIAP-TLNLLINSLR 294 >gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78] gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG] gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF] gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78] Length = 300 Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust. Identities = 25/114 (21%), Positives = 52/114 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F + + +LG ++E L ++ +R +A+ +A KA+ Sbjct: 214 NNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKTIPKAT 267 >gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] Length = 309 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61 +L KKR + P+ALD++V V AGL + A+ + S+ ++ +R + E L Sbjct: 145 YLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRV----SEEMKKTYRVIAEEFGLC 200 Query: 62 ------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S+ + + + ++ + ++ + G ++S+AL S +R R+ Sbjct: 201 NFQLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQ 260 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ +A K + LV+F PG VL+ Sbjct: 261 IAEEKAAKTAVK-----------MIFPLVFFIFPGIFVVLVG 291 >gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] Length = 326 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++ R + + P+ALD++V V AGL + D VG+ P+ + +L + Sbjct: 165 VVRSRQNRIMRALPDALDLMVVCVEAGLGL-DMTFRRVGEEIRPLSHDLSDEFHLTNLEI 223 Query: 64 SLSESISRMVRYMPLQ----EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + M L+ EVS T++ S+ G +L++AL R+ D +K + Sbjct: 224 RAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKAL----RVHSDAMRIKRRQ 279 Query: 120 QALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 A AK++ +I L F + + V PG + ++ Sbjct: 280 IAEEKAAKSTVKLIFPLVFFIFPAIFVVLVGPGVIRII 317 >gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 268 Score = 37.7 bits (86), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANL 105 P+ E+ R+I + G S ++SI R +QE S F+TV+ + + GG+ AL L Sbjct: 162 PLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVLALKEL 221 Query: 106 SRILRDRKNMKAKVQALSMEAK 127 S L +++ A+++ +K Sbjct: 222 SFSLWEKRKATARMRGEEASSK 243 >gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] Length = 294 Score = 37.7 bits (86), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 17 PNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P+A+D++V SV AGL + A V +G + +F R + + ++R+ Sbjct: 151 PDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGDQASCLARLA 210 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L E+ + + + Q G L+E + +S+ R + + + QA S+ K + +I Sbjct: 211 WRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT--LI 268 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 + LV +P +N+LIN R Sbjct: 269 QMALIMLPMLVLIIAP-TLNLLINSLR 294 >gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27] gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27] Length = 298 Score = 37.7 bits (86), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVL---- 201 Query: 61 LGLSLSESISRMVRYM 76 +G+S +++ R ++ M Sbjct: 202 IGVSSGDTLERCLKRM 217 >gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1] gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus NA1] Length = 355 Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 49/115 (42%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL + + AG+ +S+A+ + + EF ++ Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G S E++++ M + VS I + GGNLSE L ++ MK Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMK 283 >gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 314 Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust. Identities = 35/159 (22%), Positives = 78/159 (49%), Gaps = 17/159 (10%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61 ++ R + ++FP+A+D+++ V AGL + DA + VG+ P+ ++ ++ +L Sbjct: 152 VENRQREIFNNFPDAIDLLLVCVEAGLGL-DAALLKVGEEMRIKSPILADELHLV---NL 207 Query: 62 GLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + R +R + + QEV ++ + G ++ E+L + LR ++ ++A Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + A AK ++ L FC+ + L+ P ++ + Sbjct: 268 EEAA----AKIPLKLLFPLIFCIFPALLLVLLGPAFIQI 302 >gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 286 Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 7/183 (3%) Query: 4 LIKKRTAKFLDD---FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++++R A+ D +P+ +D + +VRAG+ + + +A + + P+R F R E Sbjct: 94 VLRRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S S + R+ + + + ++GG +L L LS LR+ +A++ Sbjct: 154 ATGSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMV 178 + +A + + P+ V L+ S G + P G + LLG A +L +++ Sbjct: 214 ETRQAWTVNAARLAMAAPWIV--LLLLASRGENIQAYDSPTGVLVLLGGAGVSVLAYVLM 271 Query: 179 MRL 181 R+ Sbjct: 272 KRI 274 >gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 321 Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 9/153 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG---LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 R K + FP+ALD++V +G L V+V + S + E V + G+ Sbjct: 167 RMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQKNRAGIE 226 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS ++ L ++ + I+ +LG ++E L + RD++ A+ M Sbjct: 227 LSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAAE----EM 282 Query: 125 EAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK II + C+ S + P + V+ Sbjct: 283 AAKLGVKIIFPMLTCIWPSFFIVAVGPAVIKVM 315 >gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 314 Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +I KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEMAAKIPVK 284 >gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 315 Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%) Query: 2 KHLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRR 54 + ++KR AK + P+ALD++V S+ AGL + A+ + + +S P + E + Sbjct: 146 RFFLEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQL 205 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G SE++ E ++ + G ++ E+L S LR R+ Sbjct: 206 VTLEMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRR 265 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 +A+ +A K ++ + F + S LV PG + + Sbjct: 266 QEAEERA----GKVGVKLVFPIFFFILPSMLVVAAGPGILQIF 304 >gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 291 Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVIETQH 60 +++R L + P L+ IV V AG V A+ + + Q P+ E ++ + Sbjct: 138 VQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQKEWE 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S +++ + +QEVS F+T + + + GG + + AL +LS L +++ + Sbjct: 198 GGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKAVGRT 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 E +S + + ++ L+ +P +M Sbjct: 258 LG---EQASSKLVFPMVLLFMAVLILVGAPAFM 287 >gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1] Length = 297 Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 11/140 (7%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P+ LD++ V AGL A+ + + P E R ++ +G+S ++ + R Sbjct: 151 PDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMTMGVSRRQAFDELRRRN 210 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 ++V+ F T + +LG + E L L+ +R A+ +A KA+ Sbjct: 211 DSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRRAARAVPKAT------- 263 Query: 137 PFCVSTLVYFTSPGYMNVLI 156 F V+T F PG + +L+ Sbjct: 264 -FAVTT---FMLPGTLILLV 279 >gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 17 PNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P+A+D++V SV AGL + A V +G + +F R + + ++R+ Sbjct: 151 PDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGDQAGCLARLA 210 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L E+ + + + Q G L+E + +S+ R + + + QA S+ K + +I Sbjct: 211 WRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT--LI 268 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160 + LV +P +N+LIN R Sbjct: 269 QMALIMLPMLVLIIAP-TLNLLINSLR 294 >gi|288966008|gb|ADC79648.1| TamJ [Streptomyces sp. 307-9] Length = 498 Score = 37.4 bits (85), Expect = 0.94, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKAK 118 +GL +S IS +P QEV S +S QLGG++ AL N + + DR + Sbjct: 378 VGLVISPCISAATYRVPPQEVGVVSAFVSTSQQLGGSIGTALLNAIATSVTADRIAGGGR 437 Query: 119 VQALSMEAKASAWIIGSL 136 + EA + + SL Sbjct: 438 AERAVTEATVHGYAVASL 455 >gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein [Maritimibacter alkaliphilus HTCC2654] gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein [Rhodobacterales bacterium HTCC2654] Length = 324 Score = 37.4 bits (85), Expect = 0.97, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61 + R + + FP+ALD+++ V AG + A VA + + EF V Sbjct: 165 VDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEIKA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M + +V F TV+ + G +++EAL + +RD++ M+A+ +A Sbjct: 225 GKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 284 Query: 122 LSMEAK 127 ++ K Sbjct: 285 NTLPTK 290 >gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] Length = 309 Score = 37.4 bits (85), Expect = 0.98, Method: Compositional matrix adjust. Identities = 23/105 (21%), Positives = 52/105 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P+ L + +R G+ + +A+ + + P+ E RRV+ +G S Sbjct: 92 ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 ES M + + +++ +I + GG L++ ++++S LR Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLR 196 >gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] Length = 260 Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A+ L+ L ++ ++AG P+ +A + +P + EF + G Sbjct: 77 ERAAEALEGL---LVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEF---LAALGAG 130 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L L E++ L+ + V S + GG+++ + + LR+++ A+V A Sbjct: 131 LPLEEALGLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAAR 190 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + EA+ SA ++ LP V+ P ++ L DP G L A L G+ ++R Sbjct: 191 TAEARLSARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLR 248 >gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] Length = 284 Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 93 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L + L LS LR+ ++++ Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ T P ++ N G ML+ AA I + Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLMA-TQPA-ARMVYNSFAGAMLMIAGAA---ISLAAY 267 Query: 180 RLMI 183 RLM+ Sbjct: 268 RLML 271 >gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] Length = 274 Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 98 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELKEQ 157 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121 + + + ++GG L + L L+R LRD ++++ +A Sbjct: 158 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEA 204 >gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 302 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 9/128 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIE 57 + H I R K + P+ALD++V V AGL ++ A+ + + ++PV S EF + Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNM 115 GL +++ + ++E+S ++ + G ++++AL R+ D R N Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQAL----RVQSDTMRTNR 256 Query: 116 KAKVQALS 123 + +++ L+ Sbjct: 257 RQRLEELA 264 >gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 313 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 273 EEIAAKIPVK 282 >gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] Length = 313 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 273 EEIAAKIPVK 282 >gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] Length = 355 Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/101 (21%), Positives = 47/101 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A + + EF +++ H G S Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 +++S+ M + V+ + I + GGNL++ L ++ Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMA 273 >gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB] Length = 298 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 3/135 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLS 64 + + KF + P AL ++V S+ +G + +A+ ++ V S F + V+ LS Sbjct: 79 ESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLS 138 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +S+ + + + S +I + GG L+ L L++ L D +N+K+++ +++ Sbjct: 139 FEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISVTG 198 Query: 125 EAKASAWII--GSLP 137 A +I G +P Sbjct: 199 NGLAVGLVILCGVIP 213 >gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 7/138 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62 + R + FP+ALD++V V +GL + + + + S + E V G Sbjct: 165 QARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIRAG 224 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +E++ ++ L+++ ++++ + G ++++ L + RDR+ A+ Sbjct: 225 ITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAE---- 280 Query: 123 SMEAKASAWIIGSLPFCV 140 M AK +I L FC+ Sbjct: 281 EMGAKIGTKLIFPLIFCL 298 >gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 295 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKHE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + + + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 24/191 (12%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H +KR+ + F + L+ + S+ AG+ V D++ V E ++ Sbjct: 77 NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136 Query: 62 GLSLSESISRMVRYMPL--------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + + +I+ + M L +++ F+ + GGN+ E + N IL D+ Sbjct: 137 LIGFNNNIN--IETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKI 194 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------GV 167 ++ +V+ + ++ I+ +P S + +NV+ D GH L G Sbjct: 195 TIEMEVKTMIAASRNELNIMMCMPVLFSLV--------LNVMGGDITGHATLIGRIATGA 246 Query: 168 AAAFMLIGIMV 178 A +I MV Sbjct: 247 AVMMFIIAYMV 257 >gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 320 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 75/156 (48%), Gaps = 14/156 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 ++ R ++FP+ LD++ V AGL + A+ + + + PV + E + Sbjct: 157 VEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLLELRS 216 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++++ + +++V F++++ + G +L+++L LS +LR ++ M+A+ QA Sbjct: 217 GFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRAEEQA 276 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + K + L++F P + VL+ Sbjct: 277 AKIALK-----------LLFPLIFFIFPTLLLVLLG 301 >gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 296 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/114 (21%), Positives = 51/114 (44%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMDMGVSRRQAFDELRRR 209 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F + + +LG +++ L L+ +R A+ +A KA+ Sbjct: 210 NTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRRAAKTIPKAT 263 >gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] Length = 312 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + D P+ LD + S++AG + A+ ++ S P++ EF ++ LG+ Sbjct: 153 KKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEIDLGVPR 212 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ +E F + ++LG ++ L + + +R + K +A Sbjct: 213 EKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEKA---- 268 Query: 126 AKASAWIIGSLPFCVSTLV 144 AKAS + F ++ L+ Sbjct: 269 AKASPKVTMITSFIIAPLI 287 >gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 304 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 55/120 (45%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + D P+ LD++ SV AGL A+ +V + + E R+++ +G + Sbjct: 156 RQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVKMGKPRRD 215 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + +++V F + QLG ++ L S +R ++ +A+ +A+ K Sbjct: 216 ALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQKAMKAPVK 275 >gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680] gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 301 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/114 (21%), Positives = 51/114 (44%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + + Sbjct: 155 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRKR 214 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F + + +LG ++E L L+ +R A+ +A KA+ Sbjct: 215 NSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRRAAKTIPKAT 268 >gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 328 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR K P+ALD++V V AGL + A VA + +S + EF LG Sbjct: 174 KRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGS 233 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SE +S + + ++ ++++ + G ++++AL R+ D +M+ K + ++ Sbjct: 234 PRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQAL----RVQSD--SMRTKRRQIA 287 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 E A + P LV F PG VL+ Sbjct: 288 EEKAAKTAVKMIFP-----LVLFIFPGIFVVLVG 316 >gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1] gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH 1] Length = 328 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR K P+ALD++V V AGL + A VA + +S + EF LG Sbjct: 174 KRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGS 233 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SE +S + + ++ ++++ + G ++++AL R+ D +M+ K + ++ Sbjct: 234 PRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQAL----RVQSD--SMRTKRRQIA 287 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 E A + P LV F PG VL+ Sbjct: 288 EEKAAKTAVKMIFP-----LVLFIFPGIFVVLVG 316 >gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 326 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + L+ FP+ LD+++ V AG+ + D V + S V + + G Sbjct: 166 RRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTLELRAGA 225 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ + + E+ F+T++ +LG +++ L + +R+++ M+A+ +A Sbjct: 226 SREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRAEEKA 283 >gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 189 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++KR A+ D P A+D++ +RAG P A+A VG + D P+ V LG Sbjct: 35 VRKRNARISADLPLAVDLLAACLRAGRPPQAAIAT-VGHALDGPLAGLLAEVERRLDLGA 93 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ S ++R P + F+ + G L++ L + S LR + A+ Q + Sbjct: 94 DAIDAWS-VLRAEP--TCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRA 150 Query: 124 MEAK 127 +E + Sbjct: 151 VETR 154 >gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] Length = 321 Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-----RVIETQHLG 62 R ++ P+ALD+I + AGLP+ ++ + S + VRS +++ Q Sbjct: 146 RVSRIQHALPDALDMITMTTTAGLPLQKSIKRV---SDEMVRSHEDLACELMILDRQAET 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNM 115 SL ++I + + + EV+ +++++ ++GG+++ A + + I R R+ + Sbjct: 203 GSLGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQL 256 >gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A VAV +G S P+ EF Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G LS+++ +++ RD + +A Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWII 133 + +A ++ K + +I Sbjct: 286 EKKAAALPPKLTVPMI 301 >gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 327 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 I KR +DFP+ALD++ V AGL + DA + V + S+ V E ++ Sbjct: 164 ITKRQRTIFEDFPDALDLLTVCVEAGLGL-DAALMRVSEELRFRSEVVSGELDLLLLEMR 222 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G +++E+L LS +LR R+ M+A+ + Sbjct: 223 SGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRAEER 282 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A + K ++ L FC+ P M VL+ H+ + +F IG Sbjct: 283 AARIALK----LLFPLIFCI-------FPALMGVLLGPAMIHVYRVLLPSFATIG 326 >gi|258544824|ref|ZP_05705058.1| ribonuclease G [Cardiobacterium hominis ATCC 15826] gi|258519929|gb|EEV88788.1| ribonuclease G [Cardiobacterium hominis ATCC 15826] Length = 487 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+ + I G LP L F SPG V+++ P H + AA L+G+ RL Sbjct: 200 ARPGSLIYGELPLYQKVLRDFVSPGVRRVVVDHPGAHREMQAFAANFLVGMEQTRL 255 >gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] Length = 303 Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 7/127 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRV-IET 58 + H K R + P AL+++ SV AG+ V + ++ P+ EF R +E Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 HLG+S +++ M R + +F + ++ G ++S L + +++ R KA+ Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLAR-----KAR 257 Query: 119 VQALSME 125 AL+ + Sbjct: 258 YDALTAQ 264 >gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 187 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 14/153 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESIS 70 +DFP+ALD++ V AGL + A+ + + S V SE ++ G + ++ Sbjct: 33 EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +++V F T++ + G +++E+L R+L D + +++A AK + Sbjct: 93 NLALRTGVEDVESFCTMLIQADRFGTSVAESL----RVLSDMLRTRRRMRAEERAAKIAL 148 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ L FCV P M VL+ H+ Sbjct: 149 KLLFPLIFCV-------FPALMGVLLGPALIHV 174 >gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 I R + L P LDI+ V AGL + A++ V + R E +RV+ G Sbjct: 159 IALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDVRAGK 218 Query: 64 SLSESISRMVRYMPLQE---VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +E++ M L+E SF ++VI +S +G NL L + R + +A+ + Sbjct: 219 ARAEALRAMAER--LREPGITSFVTSVIQAES-MGMNLGPVLRAQADQRRSERFQRAEKK 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 AL K +I + C +++F Sbjct: 276 ALEAPVKLLLPLIAFIFPCTFIVLFF 301 >gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] Length = 313 Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ M Sbjct: 170 LSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAALKAM 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMKA 117 R + L V F + + G L++ L ++ +R+ R+ M+A Sbjct: 230 GRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEA 277 >gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 300 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 44/94 (46%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 155 PDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRRN 214 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 ++V+ F + + +LG ++E L L+ +R Sbjct: 215 TSEQVAQFVSALQQGEELGSPIAETLIQLAADMR 248 >gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 335 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56 +++L+ KRT P+ALD++V AGL V A VA +G++ + EF I Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L + + + L V T + + G L+ AL LS R+ + M+ Sbjct: 231 ELSFL-TERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMR 289 Query: 117 AKVQALSMEA 126 A+ +A + A Sbjct: 290 AEEKAARLPA 299 >gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 322 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 15/161 (9%) Query: 4 LIKKRTA----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRV 55 ++ +RTA ++DFP+ALD++ V AGL + DA + VG+ S V SE + Sbjct: 155 VLSRRTAARQRSLVEDFPDALDLLTVCVEAGLGL-DASLMKVGEEIRLRSAVVASELELM 213 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + G S +++ ++++ FS ++ + G ++ +L R+L D Sbjct: 214 LLEMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASL----RVLSDTLRT 269 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + +++A AK + ++ L FC+ + LV P +++ Sbjct: 270 RRRMRAEERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHI 310 >gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 323 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLG 62 + R + FP++LD+++ V AG + ++ + + S P + SE+ V G Sbjct: 165 QTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMKAG 224 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 + + M + +++ F TV+ +QSQ G +++EAL + +RD++ M+A+ +A Sbjct: 225 KDKTSVLRDMSERCGVPDIASFVTVL-IQSQSFGTSIAEALRVYAGEMRDKRVMRAEEKA 283 Query: 122 LSMEAK 127 ++ K Sbjct: 284 NTLPTK 289 >gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 333 Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 11/160 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ I KR + FP+ALD+++ V AG+ + A+ V V Q E E Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAI-VKVSQEIGTTSVELAE--ELAL 216 Query: 61 LGLSLSESISRMVRYMPLQE------VSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 L LS R + Y L + V ST + Q G L AL +++ RD + Sbjct: 217 LSAELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRL 276 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A+ +A ++ A+ + +I + F V P +N+ Sbjct: 277 SAAEKKAAALPAQLTVPMI--IFFLPVLFVVILGPAIINI 314 >gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] Length = 285 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 16/185 (8%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ + +P+A+D ++RAGL + +A+ + + +R F++ G Sbjct: 99 RRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYRAGARF 158 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 +++ R+ M + + ++GG ++ L LS LR ++A+ + Sbjct: 159 VDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAE-----L 213 Query: 125 EAKASAWIIGS--LPFCVSTLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ S W + + L C LV T P + + G +LL A M+ ++ Sbjct: 214 EARQS-WTVNAARLAVCAPWLVLLLLGTQPAAVAAYRSAAGGAVLL----AGMVASVVCY 268 Query: 180 RLMIN 184 R+M+ Sbjct: 269 RVMLR 273 >gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 313 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 11/160 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56 + L+ +R + + FP+A+D++ V AGL + DA V V + S + SE V Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGL-DAAMVRVAEEMRLRSKALASELHLVS 206 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + +++ + ++E+ +++ + G +++ +L S LR + ++ Sbjct: 207 LELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLR 266 Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 A+ A AK + ++ L F + S L+ P ++N+ Sbjct: 267 AEEAA----AKIALKLLFPLIFFIFPSLLLVLMGPAFINI 302 >gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 284 Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KRTA +P+ +D + ++RAGL + +A+ + + + +R FR G Sbjct: 98 RKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYRAGGQF 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 +++R+ + + + ++GG +L L L LR+ +++++A Sbjct: 158 DPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSELEA 214 >gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 227 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/110 (20%), Positives = 51/110 (46%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L++V F+ V + + GG L + + I+RD+ ++ ++ ++ I+ +P Sbjct: 118 LEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQVQEEIHTMTAARVFEQKIMNGIP 177 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 F + + TS G+ V+ G ++ + A L M+ + ++ +V Sbjct: 178 FLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGAWMLSKKILEIEV 227 >gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] Length = 404 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 VR+GLP+ +A+ + QS P +RS V G +L+ +S P + Sbjct: 78 VRSGLPIEEALGTVARQSEKPRIRSMLMAVRTRVMEGHTLARGLSDFPHVFP----DIYR 133 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 T + Q G+L L L+ +R+ M+ K+Q Sbjct: 134 TTVEAGEQ-SGHLEVVLERLADYTENRQQMRQKIQ 167 >gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 311 Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQ 59 +K ++K P+ LD++V + AGL + +++ VG+ + F I+ Q Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ-VGEELRWIHPAFTHEIDLVQ 208 Query: 60 H---LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 H LG + ++I R + S++I + G N+SE+L+ + +LR ++ Sbjct: 209 HDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQA 268 Query: 117 AKVQA 121 A+ A Sbjct: 269 AEENA 273 >gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1] gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1] Length = 313 Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQ 59 +K ++K P+ LD++V + AGL + +++ VG+ + F I+ Q Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ-VGEELRWIHPAFTHEIDLVQ 210 Query: 60 H---LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 H LG + ++I R + S++I + G N+SE+L+ + +LR ++ Sbjct: 211 HDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQA 270 Query: 117 AKVQA 121 A+ A Sbjct: 271 AEENA 275 >gi|330948965|gb|EGH49225.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 55 Score = 35.8 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 GGN SE + NL +++RDR+ +++A++ E + +A ++ LP +S YF Sbjct: 5 GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLP--ISMAGYF 54 >gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] Length = 325 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIE 57 +K + K+R A FP+ALD+++ +GL + ++ + Q + P S E V Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+L +++ L+++ ++VI +LG ++ + S R+++ A Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 283 EENAAKLGVK 292 >gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c] gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 285 Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 8/126 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAG+ + + +A + + P+R F R E S S + ++ Sbjct: 108 WPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSCLDKLADE 167 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV---QALSMEAK---- 127 + + + ++GG +L L LS LR+ +A++ Q+ ++ A Sbjct: 168 LADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARLAL 227 Query: 128 ASAWII 133 A+ W++ Sbjct: 228 AAPWVV 233 >gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 283 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 9/126 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---- 56 ++H KR A + +P +D + ++RAGL + +A++ + +R FR Sbjct: 92 LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 T + ++L + R+ P+ + T + + ++GG +L L LS LRD Sbjct: 152 ATANFAVALDQLGERLAD--PVADKIL--TTLRITREVGGTDLGHTLTTLSAFLRDDVRT 207 Query: 116 KAKVQA 121 + ++ A Sbjct: 208 RGELAA 213 >gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 292 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/117 (21%), Positives = 54/117 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R K + PN LD ++ +V AGL A+A P+ E R ++ +G S Sbjct: 141 QERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQVGRSR 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S + +Q++ F + G +++ L ++ +R ++ +A+ +A+ Sbjct: 201 RDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQKAM 257 >gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 358 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 45/111 (40%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A+ + EF ++ G S Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E++ R M + VS I + GGNL+E L ++ MK Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMK 281 >gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 285 Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ + +P+A+D ++RAGL + +A+ + + +R F+ G Sbjct: 99 RRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYRAGARF 158 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 +++ R+ M + + ++GG ++ L LS LR ++A+ + Sbjct: 159 VDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAE-----L 213 Query: 125 EAKASAWIIGS--LPFCVSTLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ S W + + L C LV T P + + G +LL A M+ ++ Sbjct: 214 EARQS-WTVNAARLAVCAPWLVLLLLGTQPAAVAAYRSAAGGAVLL----AGMVASVVCY 268 Query: 180 RLMIN 184 R+M+ Sbjct: 269 RVMLR 273 >gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5] gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5] Length = 298 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69 KF + P AL ++V S+ +G V +A+ ++ V F +V+ LS +++ Sbjct: 84 KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKLSFEDAM 143 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + +I + GG L++ L L++ L D +N+K+++ +++ A Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAV 203 Query: 130 AWII--GSLP 137 II G +P Sbjct: 204 GLIILCGVIP 213 >gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 313 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ M Sbjct: 170 LSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAALKAM 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMKA 117 R + L V F + + G L++ L ++ +R+ R+ M+A Sbjct: 230 GRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEA 277 >gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004] Length = 193 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 33 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 91 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 92 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 151 Query: 116 KAKVQALSMEAKASAWIIGSLPF 138 + + LS + ++ +PF Sbjct: 152 EESISKLSTKLTLPLFLFILIPF 174 >gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 291 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/127 (22%), Positives = 55/127 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +KR + PNALD ++ SV+AGL A+ P+ E R ++ Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + + V F + G ++ L ++ +R ++ A+ Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254 Query: 121 ALSMEAK 127 A+ M K Sbjct: 255 AMKMPVK 261 >gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] Length = 301 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + F +ALD++ V +G A+ + + P+ EF RV+ +G++ Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSM 124 ++ M EV F + + +LG ++ L ++ +R R+ + K Q +++ Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTV 268 Query: 125 E 125 + Sbjct: 269 K 269 >gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 313 Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/130 (20%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57 ++ + +KR + D P+ +D++V +G+ + A+A I + + + + EF + Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L+++ T+ + G +++AL S +LR R+ +A Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 273 EEMAAKIPVK 282 >gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium sticklandii DSM 519] gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium sticklandii] Length = 405 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 12/131 (9%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+S+A+ V+ Q+ + V R + V GL LS+++ + + P + Sbjct: 79 LNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKHKKVFP----NLLI 134 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144 T++ ++ GNL LA +S + +K++ A+ A S +G + F ++ ++ Sbjct: 135 TMVEA-GEMTGNLDNVLAKMSEHYEKENKINSKIKGAMVYPAILSVAAVGVVIFLLTFIM 193 Query: 145 -----YFTSPG 150 FTS G Sbjct: 194 PTFTEMFTSSG 204 >gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] Length = 333 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56 +K+ KRT + P+ALD++V AGL V A VA +G++ + EF I Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L + + + + L+ V T + + G L+ AL LS R+ + M+ Sbjct: 231 ELSFLN-ERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMR 289 Query: 117 AKVQALSMEA 126 A+ +A + A Sbjct: 290 AEEKAARLPA 299 >gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] Length = 355 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 47/105 (44%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + ++R + P L + + AG+ +++ + + + EFR VI+ H Sbjct: 169 KSVWRRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHK 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 G S +++++ M VS I + GGNLS+ L ++ Sbjct: 229 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMA 273 >gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3] gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus gammatolerans EJ3] Length = 358 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 45/111 (40%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A+ + EF ++ G S Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E++ R M + VS I + GGNL+E L ++ MK Sbjct: 231 EEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMK 281 >gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 205 Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 45 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 103 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 104 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 163 Query: 116 KAKVQALSMEAKASAWIIGSLPF 138 + + LS + ++ +PF Sbjct: 164 EESISKLSTKLTLPLFLFILIPF 186 >gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 329 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 26/163 (15%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +KR P+ALD++V V AGL + A+ + S+ +R +R + E L Sbjct: 166 LGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKV----SEEMRKSYRVIAEEFSL-C 220 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQS---------QLGGNLSEALANLSRILRDRKN 114 +L + R R LQE+ S V ++S + G ++++AL S +R R+ Sbjct: 221 NLQLQMGRG-RTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRR 279 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+ +A K + LV F PG VL+ Sbjct: 280 QIAEEKAAKTAVK-----------LIFPLVLFIFPGIFVVLVG 311 >gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 652 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 44/87 (50%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P+ L+ + R GL ++ A+ ++V + + E RR+ G + SE++ R + + Sbjct: 432 PDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSEALMRFEQRI 491 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALA 103 ++ T+I+ S++ G + E LA Sbjct: 492 STASIARTVTLITKASEMTGQIGEVLA 518 >gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599] gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 311 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/74 (22%), Positives = 37/74 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + R + D P LD + +++AG+ + A+ ++ P+R EF R + Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207 Query: 61 LGLSLSESISRMVR 74 LG+ ++ +++R Sbjct: 208 LGVQREKAYEQLLR 221 >gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 9/95 (9%) Query: 29 AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ A+ ++ Q+ + + R ++ + G + E+++R+ + P+ V Sbjct: 78 AGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETFHEALARLQVFPPI-------MV 130 Query: 88 ISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ +LGG+L EAL L+ L ++ KV++ Sbjct: 131 HAIEAAELGGSLDEALEELAAHLEREHELQEKVKS 165 >gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] Length = 331 Score = 35.4 bits (80), Expect = 3.6, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56 +K+ KRT P+ALD++V AGL V A VA +G++ + EF I Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L ++ + + L+ V T + + G L+ AL LS R+ + M+ Sbjct: 231 ELSFL-TERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMR 289 Query: 117 AKVQALSMEA 126 A+ +A + A Sbjct: 290 AEEKAARLPA 299 >gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 286 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A + +P+ +D + VRAGL + +AVA + + +R+ FR E Sbjct: 100 RRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYRATGRF 159 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 ++S+ + + + + +GG +L L LS LRD + +++A Sbjct: 160 TDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGELEA 216 >gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 313 Score = 35.4 bits (80), Expect = 3.7, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMVR 74 P+A++++ ++ AG P+ + P+ EF V E LG S E++ + + Sbjct: 167 LPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEALEHLGQ 226 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q+VS F+ + G +L+E LA + + R+ +A + M K I+ Sbjct: 227 RCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD--IVL 284 Query: 135 SLPFCVSTLVYFTSPGYMNVL--INDPRG 161 SL F T+ P +N+L +ND G Sbjct: 285 SLCFLPPTVALVVVPTVVNLLNFLNDSMG 313 >gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/183 (19%), Positives = 85/183 (46%), Gaps = 16/183 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55 K LI+KR + F L +I+ S++AG + A+ + + + +E + Sbjct: 54 KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + + + +++++ F+ V V + GGNL + + + + + D+ M Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173 Query: 116 KAKVQA-LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++QA +S + S ++ LP + L+ YMN+ + D + G+ ++ Sbjct: 174 EREIQAFISGKKLESKFMTAILP---AILL------YMNISMADMMNSLYQGILGRLVMS 224 Query: 175 GIM 177 G++ Sbjct: 225 GVL 227 >gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust. Identities = 28/180 (15%), Positives = 75/180 (41%), Gaps = 9/180 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54 + L K+ + F + + + S+ G + +A + ++ G S + EFR Sbjct: 57 RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSES-RIAKEFRI 115 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + ++ + + ++++ +F+ V + GG+L + N + ++RD+ Sbjct: 116 ICNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNE 175 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFML 173 + ++ + + ++ +PF + + SP ++ L + G ++ G A + L Sbjct: 176 VAEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYAL 235 >gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] Length = 250 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSES 68 A+ P+AL I +V GL + A V+ P+ FRRV+ + G + ++ Sbjct: 33 ARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPDA 92 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALSM 124 + + + + F+ ++ ++ G L E L +R ++ R+++ A+++ + Sbjct: 93 LWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYVL 152 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSP 149 A ++G LVYF P Sbjct: 153 LYYA---VVGVFAALSDVLVYFMLP 174 >gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6] gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6] Length = 298 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 3/130 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69 KF + P AL ++V S+ +G V +A+ ++ V + F +V+ LS +++ Sbjct: 84 KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERKLSFEDAM 143 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + +I + GG L++ L L++ L D +N+K+++ +++ A Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAV 203 Query: 130 AWII--GSLP 137 II G +P Sbjct: 204 GLIILCGVIP 213 >gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806] gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 404 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+ + V+ QSS+P +R + + G LS+++++ VS Sbjct: 77 INAGVPIMRCLGVLGDQSSNPKMRKALQAISTDVQQGSPLSQAMAKHTECFDELYVSMIE 136 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + GG L E L LS++L D +K ++++ Sbjct: 137 A-----GETGGVLDEVLLRLSKLLEDMARLKNQIKS 167 >gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 301 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64 + R + +FP LD++V + +A + +++ + + V S E + ++ LG Sbjct: 149 QDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGTG 208 Query: 65 LSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ R M +EV VI + + G N E L +R LR R+ KA + Sbjct: 209 MIEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASEK 267 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 268 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 296 >gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGL 63 ++ R + +FP LD++V + +A + +++ + + V S E + ++ LG Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALGT 206 Query: 64 SLSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ R+ R M +EV VI + + G N E L +R LR R+ KA + Sbjct: 207 GMVEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASE 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 266 KLKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295 >gi|332160536|ref|YP_004297113.1| general secretion pathway protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664766|gb|ADZ41410.1| general secretion pathway protein F [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 402 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%) Query: 27 VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81 V A +P+ +A+A+I QS+ D V + R RV+E G SLS+S+S+ P Sbjct: 76 VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S + ++I+ +L G+L L+NL+ + + +K+K+ Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQTRKVKSKI 164 >gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64 + R + +FP LD++V + +A + +++ + + V S E + ++ LG Sbjct: 148 QDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGTG 207 Query: 65 LSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ R M +EV VI + + G N E L +R LR R+ KA + Sbjct: 208 MIEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASEK 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295 >gi|330863524|emb|CBX73640.1| hypothetical protein YEW_CV11520 [Yersinia enterocolitica W22703] Length = 402 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%) Query: 27 VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81 V A +P+ +A+A+I QS+ D V + R RV+E G SLS+S+S+ P Sbjct: 76 VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S + ++I+ +L G+L L+NL+ + + +K+K+ Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQTRKVKSKI 164 >gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091] gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera stadtmanae DSM 3091] Length = 307 Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/106 (20%), Positives = 47/106 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R + P+ L+ I + GL A+ + S P+ +E ++++ Sbjct: 90 EHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQFKKPF 149 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 +ES+ + L + + +I + GGNL+E L ++S L++ Sbjct: 150 NESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKE 195 >gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] Length = 301 Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMVR 74 P+A++++ ++ AG P+ + P+ EF V E LG S E++ + + Sbjct: 155 LPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEALEHLGQ 214 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Q+VS F+ + G +L+E LA + + R+ +A + M K I+ Sbjct: 215 RCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD--IVL 272 Query: 135 SLPFCVSTLVYFTSPGYMNVL--INDPRG 161 SL F T+ P +N+L +ND G Sbjct: 273 SLCFLPPTVALVVVPTVVNLLNFLNDSMG 301 >gi|157150407|ref|YP_001449579.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str. Challis substr. CH1] gi|229486382|sp|A8AUW9|MUTS2_STRGC RecName: Full=MutS2 protein gi|157075201|gb|ABV09884.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str. Challis substr. CH1] Length = 777 Score = 35.0 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLS-----RILRDRKNMKAKVQALSMEAKASAWI 132 + ++S T I ++ + NL+E ++N +LR + + A ++ + E +AWI Sbjct: 208 VHDISASGTTIYIEPRAVVNLNEEISNYKADERYELLRILQELSAMIRPHAAEIANNAWI 267 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 IG L ++ L + G + I+D + LL V Sbjct: 268 IGHLDLVMAKLAFMRERGAVVPAISDTQAIQLLQV 302 >gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] Length = 329 Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56 + ++ KRT P+ALD++V AGL V A VA +G++ + EF I Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L ++ + + L+ V T + + G L+ AL LS R+ + M+ Sbjct: 229 ELSFLN-ERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMR 287 Query: 117 AKVQALSMEA 126 A+ +A + A Sbjct: 288 AEEKAARLPA 297 >gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 299 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60 +K R + P+A+D++V V AGL + A+ + VGQ S + EF ++ Q Sbjct: 140 VKGRRHRISRSMPDAIDLLVICVDAGLGLDQAM-LRVGQELAVSHPEINEEFLQINREQR 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ L E+ F +++ + G ++ AL S +R ++ A+ + Sbjct: 199 AGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIAEEK 258 Query: 121 ALSMEAK 127 A K Sbjct: 259 AAKTTVK 265 >gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] Length = 478 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57 +K +KKR + D+P L I+ AGL + ++ IV Q D + E+ E Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374 Query: 58 TQHL-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALAN-LSRI 108 + G+S +I++ L + +I + G G LS AL N L+R Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNRA 434 Query: 109 LRDRKNMKAKVQALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNV 154 L +RKN AL ++ S ++G + + LV P M++ Sbjct: 435 LVERKNT-----ALKRGSEISTKLLGPMTVMLIVALVILMVPALMSI 476 >gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 287 Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 111 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELKDQ 170 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121 + + + ++GG L + L L+R LR+ ++++ +A Sbjct: 171 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEA 217 >gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 324 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I R +DFP+ALD++ V AGL + A+ + + S V SE ++ Sbjct: 160 IASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLLEMRS 219 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ + ++++ F ++ + G ++ ++L R+L D + +++A Sbjct: 220 GFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSL----RVLSDMLRTRRRMRA 275 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L FC+ + L P ++++ Sbjct: 276 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHI 310 >gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 284 Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 108 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 167 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 + + ++GG +L L +LS++LR+ + +++A Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 214 >gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str. MC2 155] gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium smegmatis str. MC2 155] Length = 210 Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 7/164 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ALD++V +R G DA G+S PV R V LG ++ + + R Sbjct: 39 GALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARLGADVAAGLDDVARA-- 96 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQALSMEAKASAWII 133 ++ ++V +L AL L R +R+ A+V+A + +A ++ Sbjct: 97 -SQLPGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVRAAMAGPRTTALVL 155 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LP L + L+ G LL + G++ Sbjct: 156 AGLPLAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLL 199 >gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP 32953] gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953] Length = 277 Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 116 KAKVQALSMEAKASAWIIGSLPF 138 + + LS + ++ +PF Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258 >gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 292 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/121 (20%), Positives = 54/121 (44%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + PN LD ++ SV AGL A+A G + E R ++ +G Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +Q++ F + + G +++ L ++ R ++ +A+ +A+ + Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261 Query: 127 K 127 K Sbjct: 262 K 262 >gi|257464504|ref|ZP_05628875.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202] gi|257450164|gb|EEV24207.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202] Length = 398 Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 ++ L + V+A +P+ A+A+I+ + + +I+ LG + S ++ + Sbjct: 58 EEITQVLSQLAMLVKAKIPLKSALAMILENCTQIKIYLWLEALIKWIELGYAFSMALEKS 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +Y+P QE+ ++ G L L N+++ ++++ KV+ + Sbjct: 118 EKYIPQQEIQLIKM-----GEISGKLETILQNIAKARKEKETTLKKVKKI 162 >gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 184 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 S 68 + Sbjct: 176 A 176 >gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] Length = 298 Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust. Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 6/152 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A + P+ALD IV S+ +GL A+ E R ++ +G+ Sbjct: 145 RERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQVGMPR 204 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + +V +++ F + + G ++S + N S +R ++ ++A+ +A + Sbjct: 205 RAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGKAQQVS 264 Query: 126 AKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 K ++ L FC+ +++ +PG M + Sbjct: 265 VK----LLFPLIFCLFPVLFVIVLAPGVMTAI 292 >gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10] gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str. 91001] gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola] gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1] gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92] gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10] gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92] gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola] gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038] gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 277 Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 116 KAKVQALSMEAKASAWIIGSLPF 138 + + LS + ++ +PF Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258 >gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] Length = 268 Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/133 (18%), Positives = 63/133 (47%), Gaps = 5/133 (3%) Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 EF + L +L E S ++E+ F+ ++ + GG + +++++ I+ Sbjct: 132 EFSDMRRQLSLNRTLEELWSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIG 191 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV--- 167 + ++ +++ ++ + + I+ LP + + TSPG+ + + G +++ V Sbjct: 192 GKLQVQEEIRTMTAQKQFEQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLA 251 Query: 168 --AAAFMLIGIMV 178 A A++L G M+ Sbjct: 252 VYAGAYVLAGRML 264 >gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19] gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19] Length = 325 Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ P+AL +V +RAGL + + + + + EFR V+ G + E Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-- 125 +I M + + ++ + S GG L++ L + +R+ + ++ + +A++ Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITTMPC 221 Query: 126 -AKASAWIIGSLPFCVS 141 A A +I LP VS Sbjct: 222 LALALGGLISGLPVGVS 238 >gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 347 Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLG 62 +KRT P+ALD++V AGL V A + + +G++ + EF + + LG Sbjct: 186 QKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEF--ALTSIELG 243 Query: 63 L--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + + L+ V T + + G L+ AL LS R+ + M+A+ + Sbjct: 244 FLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEEK 303 Query: 121 ALSMEA 126 A + A Sbjct: 304 AARLPA 309 >gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 277 Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust. Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 116 KAKVQALSMEAKASAWIIGSLPF 138 + + LS + ++ +PF Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258 >gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469] gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469] Length = 204 Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL-SESISR 71 L + P +DI++ + +GL A+ + + S + E T LG + E++++ Sbjct: 61 LREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREEALNQ 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 M + + + F+TV++ G L+E L + +LRD + Sbjct: 121 MAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQ 162 >gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20] Length = 283 Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKTR 166 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 + + ++GG +L L +LS++LR+ + +++A Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 213 >gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 +K+ I KR FP+ALD+++ V +G+ + A V+V +G S P+ E Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-----QSQ-LGGNLSEALANLSRILRD 111 LS R + Y LQ+ + V SV QS+ G L + L +++ RD Sbjct: 226 ------ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRD 279 Query: 112 RKNMKAKVQALSMEAK 127 + +A+ +A S+ K Sbjct: 280 MRMNEAEKKAASLPPK 295 >gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 297 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 140 VRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114 ++ + + ++V+ F T + +LG + E L ++ +R D +N Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQN 251 >gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 987 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHLG 62 ++R + + FP++LD+++ V AG + ++ + + + P + E+ V G Sbjct: 829 QERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAYEMKAG 888 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + M + +V+ F TV+ Q G +++EAL + +RD++ M+A+ +A Sbjct: 889 KDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRAEEKAN 948 Query: 123 SMEAK 127 ++ K Sbjct: 949 TLPTK 953 >gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 288 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 5/141 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 +K K+R L P +D++ S+ AGL +S A+ V +S+ P+ E RV+ Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +++ + ++ F + + + G +L L + R + ++A Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRA-- 248 Query: 120 QALSMEAKASAWIIGSLPFCV 140 + L+MEA ++G L F + Sbjct: 249 EKLAMEAPVK--MLGPLIFFI 267 >gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 3/136 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 +K+ I+KR FP+ALD+++ + +G+ + A V++ +G S P+ EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASAWII 133 + +A ++ K + +I Sbjct: 286 EKKAAALPPKLTVPMI 301 >gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] Length = 412 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG+P+++++ + Q +P +F+ ++ ++ S++ ++ P F + Sbjct: 86 LRAGIPLAESLGALFEQIENP---KFQAIVGEVRTAVNEGSSLADALQKHPRVFDELFVS 142 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ +L GNL E L L+ + +++KVQ Sbjct: 143 MVRA-GELAGNLDEVLERLAEFMESSAQLRSKVQG 176 >gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense MSR-1] Length = 199 Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 19/123 (15%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSE------ 67 FP+ALD++V V AGL V A+ + + +S P +E +GL+ +E Sbjct: 55 FPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAE--------EIGLTAAELAFLGD 106 Query: 68 ---SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + L +V ST + + G +++AL LS+ R+ + A+ +A S+ Sbjct: 107 RRQAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASL 166 Query: 125 EAK 127 AK Sbjct: 167 PAK 169 >gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium 1_7_47_FAA] gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium 1_7_47FAA] Length = 403 Score = 34.7 bits (78), Expect = 6.2, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%) Query: 29 AGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P+S A+AV + D P+R R+ E+ H G +L E++ M P V T Sbjct: 81 AGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPGVFPNLLVYMIQT- 139 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + G L L ++ + M KV+A Sbjct: 140 ----GESSGKLDVMLGTMAEYYDREEEMNGKVRA 169 >gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 204 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 28 RAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFF 84 +G+ V A+ V+ + D PV SE RV+ + GL L E + + + + E+S Sbjct: 71 ESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDT 130 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 +++ GG ++L L +++ DR+ + + + AK S ++ L + L+ Sbjct: 131 CVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFL--FPALLI 188 Query: 145 YFTSPGYMNV 154 PG+M + Sbjct: 189 VLAGPGFMAI 198 >gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 294 Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 52/119 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + N LD ++ SV AGL A+A P+ E R ++ +G S Sbjct: 141 KERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQVGRSR 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+ + + E+ F I G +S L ++++R ++ +A+ +A+ + Sbjct: 201 REAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEKAMKL 259 >gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 295 Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 7/130 (5%) Query: 29 AGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFFS 85 +G+ V A+ V+ + D PV SE RV+ + GL L E + +M + + E+S Sbjct: 162 SGMAVEQALRVLSNEGKDLLPVLSEEIRVVLARVDSGLELGEELRKMAALLDVDELSDTC 221 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLV 144 +++ GG ++L L +++ DR+ + + + AK S ++ P + L+ Sbjct: 222 IILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMVFLFP---ALLI 278 Query: 145 YFTSPGYMNV 154 PG++ + Sbjct: 279 VLAGPGFIAI 288 >gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHL 61 I KR + FP+ALD+++ V AG+ + A+A + +G SS + E L Sbjct: 169 ITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEEL------SLL 222 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISV-----QSQLGGN-LSEALANLSRILRDRKNM 115 LS R + Y L + + V SV Q++ G LS AL +++ RD + Sbjct: 223 SAELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLS 282 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A+ +A ++ A+ + +I L F + P +N++ +G Sbjct: 283 AAEKKAAALPAQLTVPMI--LFFLPVLFIVILGPAILNIMDTMAKG 326 >gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 277 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58 +K+ + KRT L P +DI V++G+ + +++ Q + ++ ++ T Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175 Query: 59 QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + ++ L +I + Y P E+ F + + G + E L +LS+ +R+ Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMRE 229 >gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] Length = 308 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ LIK R + P+ALD++V V AGL + A V+ + +++ V SEF Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + ++ + ++ + G ++++AL S +R +++ A Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + QA K + LV F PG VL+ G AA M+ G++ Sbjct: 267 EEQAAMTAVK-----------MIFPLVLFIFPGIFVVLV---------GPAAIMMINGLL 306 Query: 178 V 178 Sbjct: 307 T 307 >gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEF 52 +K+ I+KR FP+ALD+++ + +G+ + A V++ +G S P+ EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEF 220 >gi|123443546|ref|YP_001007519.1| general secretion pathway protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090507|emb|CAL13376.1| general secretion pathway protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 402 Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%) Query: 27 VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81 V A +P+ +A+A+I QS+ D V + R RV+E G SLS+S+S+ P Sbjct: 76 VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S + ++I+ +L G+L L+NL+ + + +K+K+ Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQARKVKSKI 164 >gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61 I KR FP+ALD+++ V +G+ + A VA+ +G S P+ EF + T L Sbjct: 170 ISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEF--TLTTAEL 227 Query: 62 GLSLSESIS--RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ + + L+ V + + G L ++L +++ RD + +A+ Sbjct: 228 SYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEK 287 Query: 120 QALSMEAKASAWII 133 +A ++ K + +I Sbjct: 288 KAAALPPKLTVPMI 301 >gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 286 Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAG+ + + +A + + P+R F R E S S S+ R+ Sbjct: 109 WPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRATGSFSASLDRLADD 168 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120 + + + ++GG +L L LS LR+ +A+++ Sbjct: 169 LADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELE 214 >gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 339 Score = 34.3 bits (77), Expect = 7.1, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVIET 58 +LI KRT P+ALD++V AGL + A VA +G++ + EF IE Sbjct: 178 NLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAIEL 237 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L+ + T + + G L+ AL LS R+ + M+A+ Sbjct: 238 SFLTERRS-AFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAE 296 Query: 119 VQALSMEA 126 +A + A Sbjct: 297 EKAARLPA 304 >gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 283 Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust. Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 166 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 + + ++GG +L L +LS++LR+ + +++A Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 213 >gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] Length = 353 Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 43/101 (42%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R A+ P L + + AG+ +++A+ + + EF +I G S Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 E+++R M + VS + + GGNLS L L+ Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLA 271 >gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM 2246] Length = 307 Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HL 61 I+KR + P+ALDI+V SV G ++ A+ + D PV V++ + L Sbjct: 151 IEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQREVQL 210 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS+ ++ R + E + + + G ++ +AL R D + A Sbjct: 211 GLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKAL----RTFADSARQDRQAWA 266 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + KAS ++ + C+ ++ Sbjct: 267 EEVAQKASVKVVFPMLLCIFPAIF 290 >gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209] gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC 33209] Length = 284 Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R A + +P+ +D + ++RAGL +++A+ + + +P+R FR G S Sbjct: 98 KRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYRAGGSF 157 Query: 66 SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ + + P+ + F + + G +L L LS LR+ +++++A Sbjct: 158 ETSLDLLKERLADPVAD-RIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSELEARQ 216 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A I + P+ V LV + + N P G +LL A ++I ++ RLM+ Sbjct: 217 SWTVNAARIAVAAPWIV--LVLLAAQPNALLAYNSPSGWILL---LAGLIISVVCYRLML 271 Query: 184 N 184 Sbjct: 272 R 272 >gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M] gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 267 Score = 34.3 bits (77), Expect = 7.4, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+I+V +R G A V ++ PV + R V LG ++ + R L Sbjct: 97 ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RD---RKNMKAKVQALSMEAKASAWIIG 134 S + ++V QL + A+A L R RD R+ AKV A A+ASA I+ Sbjct: 157 P--SHWER-LAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILA 213 Query: 135 SLP 137 LP Sbjct: 214 GLP 216 >gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99] gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length = 264 Score = 34.3 bits (77), Expect = 7.7, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+I+V +R G A V ++ PV + R V LG ++ + R L Sbjct: 97 ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RD---RKNMKAKVQALSMEAKASAWIIG 134 ++V QL + A+A L R RD R+ AKV A A+ASA I+ Sbjct: 157 PA---HWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILA 213 Query: 135 SLP 137 LP Sbjct: 214 GLP 216 >gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] Length = 289 Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +P+A+D I +VRAG+ + +AVA + + + +R F+ + + + + R+ Sbjct: 111 DLWPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLK 170 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV---QALSMEAK-- 127 + + + ++GG +L L LS LR+ ++++ Q+ ++ A Sbjct: 171 ERLSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARL 230 Query: 128 --ASAWII 133 A+ WI+ Sbjct: 231 AVAAPWIV 238 >gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 303 Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR + + P+A + S+RAG+ S+A+ + + EF+RV+ G S Sbjct: 88 ISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKGRS 147 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALA----NLSRILRDRKNMKA 117 E++ M V + S +I +++ + G +S+ L ++ ILR ++ KA Sbjct: 148 TVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205 >gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167] gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167] Length = 271 Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 3/124 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 +++ R KF L ++ + +G P+ + + +P V EFRR++ + G Sbjct: 87 MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRIL-RDRKNMKAKVQ 120 + +I R + +P + + +++ + G++++ LA L I+ R++ K++ Q Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206 Query: 121 ALSM 124 ALS+ Sbjct: 207 ALSL 210 >gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 323 Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56 + + I R FP+ALD+++ V +G+ + A V +G S P+ EF Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E +L + ++ R L+ V STV+ + G L +AL ++ RD + M+ Sbjct: 224 ELSYLPDRRTAYLNLAAR-TGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMME 282 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ +A ++ K + +I + F +V SP + V+ Sbjct: 283 AEKKAAALPPKLTVPMI--VFFLPVLMVVVLSPAAIQVM 319 >gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 189 Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LD++ +RAGLPVS A+ + + P+ RRV + LG Sbjct: 50 LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALG 92 >gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 318 Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust. Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 I +R D+ P+ALD++V V +G+ + AV + + +S P + SEF+ + Sbjct: 158 INRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTLELRA 217 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + L +++ ++++ G ++ L S +R +++ +A+ +A Sbjct: 218 GKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRAEEKA 277 Query: 122 LSM 124 M Sbjct: 278 AKM 280 >gi|73667452|ref|YP_303468.1| type IV secretion system protein VirB5 [Ehrlichia canis str. Jake] gi|72394593|gb|AAZ68870.1| CagE, TrbE, VirB family component of typeIV transporter system [Ehrlichia canis str. Jake] Length = 791 Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 14/111 (12%) Query: 52 FRRVIETQHLGLSLSESISRMVRY---MPLQEVSFFSTVISVQSQLGGNLSEALAN--LS 106 +R++ +++ + SI+++V + +P++ + S + S LG N+++ + N + Sbjct: 528 LQRMLNVKNITEEMKSSINQVVDHIFTLPIESRTI-SNIADHISGLGKNVNQWVNNGEFA 586 Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +L++ N+ K + L + I+ S P C S ++Y+ ++N+LIN Sbjct: 587 HLLKEDSNIDWKAKVLGLNVG----IVFSKPQCASVIIYY----FLNMLIN 629 >gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2] gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 298 Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69 KF + P AL ++V S+ +G V +A+ ++ V F +++ LS +++ Sbjct: 84 KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFEDAM 143 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + +I + GG L++ L L++ L D +N+K+++ +++ A Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAV 203 Query: 130 AWII--GSLP 137 II G +P Sbjct: 204 GLIILCGVIP 213 >gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 295 Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust. Identities = 22/106 (20%), Positives = 46/106 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 VRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + + + ++V+ F T + +LG + E L ++ +R Sbjct: 198 RRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMR 243 >gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum JL354] Length = 342 Score = 33.9 bits (76), Expect = 10.0, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRV-IETQHL 61 KKRT P+ALD++V AGL + A VA +G++ + EF IE L Sbjct: 187 KKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSFL 246 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + + L+ V T + + G L+ AL LS R+ + M+A+ +A Sbjct: 247 N-NRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKA 305 Query: 122 LSMEA 126 + A Sbjct: 306 ARLPA 310 Searching..................................................done Results from round 2 >gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 325 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 110/183 (60%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR K P+A+D+I R++RAG + A+ ++ + +P+ EF E + G+S Sbjct: 143 RRKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+++ + + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS Sbjct: 203 LDEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAWI+G LPFC + ++ +P +M VL DP G ++G+A M++G++ MR +I Sbjct: 263 EGRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIR 322 Query: 185 FDV 187 V Sbjct: 323 IRV 325 >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 Query: 181 LMINFDV 187 LMINFDV Sbjct: 181 LMINFDV 187 >gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 325 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL KR + P+A+D+I R++RAG S A++++ + P+ EFR E + G Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++G LPF + ++ +PG+MNVL DP G ++G A M G++ MR + Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 323 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 136/186 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL+ P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V +VY SP Y+++L P G +L A +M GI+VM+ Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316 Query: 181 LMINFD 186 MINFD Sbjct: 317 KMINFD 322 >gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 142/187 (75%), Positives = 174/187 (93%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L D RGH++LG+AA M++G ++MR Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321 Query: 181 LMINFDV 187 MINFD+ Sbjct: 322 TMINFDM 328 >gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KF++ P+A+D+IVR ++AGLP+ D++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P+R+EF +++TQ Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G M+L +M IG+ VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 324 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 96/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R KFL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4] Length = 334 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 152/187 (81%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI++R KFL +FPNALD++VRS+++GLP++DA+ +I + +PV++EFRRV++ Q Sbjct: 148 VSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+++ E+ RM MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV Sbjct: 208 LGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVS 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ VL DPRGHM+LG +A +M IGI VMR Sbjct: 268 ALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 NMINFDI 334 >gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI+VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] Length = 336 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 105/185 (56%), Positives = 148/185 (80%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L +R FL +FPNALDI+VRS+++GLP++DA+ +I + +PVR+EF+R++++Q +G Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ E+ +R+ +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+ LVY TSP Y+ +L D RGH++LG +A +M IGI+VMR M Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDI 336 >gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34] Length = 325 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR + P+A+D+I R++RAG + A+ ++ + P+ EFR E + G Sbjct: 141 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + L+ +PG+M VL DP G ++G A M+ G++ MR + Sbjct: 261 SAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 102/186 (54%), Positives = 139/186 (74%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFLD P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V +VYF SP Y+++L +P G ++L V+ A+M G+M+M+ Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318 Query: 181 LMINFD 186 MINFD Sbjct: 319 KMINFD 324 >gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 95/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF V+++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 326 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 99/187 (52%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KF+++FP ++D+I+R V+AGLPV+D VI + +PVR EFRR+IE+Q Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E++ R +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+ Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V VY T+P YM VL G +++ +M IG+ +MR Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319 Query: 181 LMINFDV 187 MINFD+ Sbjct: 320 KMINFDI 326 >gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KFL P+A+D+IVR ++AGLP+ +++ V+ S +P+RSEF +IETQ Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G ++L +M +GIMVM+ Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 KMINFD 339 >gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 325 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + P+A D+I R++RAG A+ ++ + +P+ EF V + + Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+S+++ MV +P++++ +F + +Q + GGNL+E L +++ I+R+R + KV+ Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAW++G LPF + L+ +PGY++V DP G + GVA A ML GI+ MR Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318 Query: 181 LMINFDV 187 ++ V Sbjct: 319 KVVRIRV 325 >gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS] gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS] Length = 305 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F P ALD I RS+RAG +S A+ +I + DP+ EF+ V + + Sbjct: 119 LSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMN 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+ + + + ++SFF + +Q + GGNL+E L L+ +R+R ++ KV+ Sbjct: 179 FGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVR 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++GS+PF +T++ +P Y+ L N P+GH LL +A ML+G+ V+ Sbjct: 239 TLSSEGRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLN 298 Query: 181 LMINFDV 187 M+ V Sbjct: 299 NMVKIKV 305 >gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 335 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 111/185 (60%), Positives = 153/185 (82%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK+R KFL++FPNALD+I RS+R+GLP++DAV ++ ++ +PVR+EFRRV+ETQ +G Sbjct: 151 FLIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVG 210 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS++++ +RM +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV AL Sbjct: 211 LSMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVAL 270 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L DPRGH+++ +A +M G+++MR M Sbjct: 271 SMEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQM 330 Query: 183 INFDV 187 +NFD+ Sbjct: 331 VNFDI 335 >gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 131/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P++SEF ++ETQ Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M IGI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 QMINFD 323 >gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R KFL P+A+D+IVR ++AGLP+ D++ V+ + +P+RSEF +IETQ Sbjct: 138 LGFLKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L+++ +R+ MPL E +FF VI++Q + GGNLSEAL+NLS++LRDRK M K+Q Sbjct: 198 IGMPLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 322 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + Sbjct: 136 LLKLADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIG 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+I R+ + +++FF +++Q + GGNL+E L+R +R R ++ K++ Sbjct: 196 FGIPFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +AS W++GS+PF + ++ +P Y+ L P+G+ ++ + A M +G +V++ Sbjct: 256 ILSSEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLK 315 Query: 181 LMINFDV 187 ++ V Sbjct: 316 RIVQIKV 322 >gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 325 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + +A+D+I R++RAG S A+ ++ + P+ EFR E + G++L Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SAW++G LPF + L+ +PG+M VL DP G ++G A M G++ MR +I Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099] gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099] Length = 337 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 108/187 (57%), Positives = 144/187 (77%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q Sbjct: 151 VSFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ Sbjct: 211 MGISIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG AA +M IGI+VMR Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 KMMNFEV 337 >gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 327 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KKR KF + ++L II S++AG A+ ++ + P+ E RV++ + Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + ++ T + +Q Q+GGNLSE L N+S +R+R +K ++Q Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + +++ SP YM L P G ++GV ++G ++++ Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320 Query: 181 LMINFDV 187 +I+ +V Sbjct: 321 KIIDIEV 327 >gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 336 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PV++EFRRV+E+Q +GL Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3] Length = 335 Score = 200 bits (509), Expect = 9e-50, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 337 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 144/187 (77%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PV++EFRR++++Q Sbjct: 151 VSFRRSRRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQ 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330 Query: 181 LMINFDV 187 M+NF+V Sbjct: 331 KMMNFEV 337 >gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652] gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512] Length = 335 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 325 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR + P+A+D+I R++RAG S A+ ++ + P+ EFR E + G Sbjct: 141 RLRAKRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + AK++ L Sbjct: 201 IALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LPF ++ +P +M VL DP G ++G A M++G++ MR + Sbjct: 261 SAEGRMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 336 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 152/184 (82%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IK+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 RIKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G +A +M IGI +MR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 108/183 (59%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+ Sbjct: 150 AKQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIP 209 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++I + + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS Sbjct: 210 FKDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSS 269 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E +ASAWI+G++PF + ++ +PGY++VL + P+G L+ + M +GI V+ ++ Sbjct: 270 EGRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQ 329 Query: 185 FDV 187 V Sbjct: 330 IKV 332 >gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 90/186 (48%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +FL+ P+A+D+IVR ++AGLP+ D++ V+ S +P+++EF +IETQ Sbjct: 138 LGFLKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQT 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5] gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771] Length = 335 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 113/187 (60%), Positives = 154/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRR+IE Q Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC 13177] gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 325 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 114/185 (61%), Positives = 153/185 (82%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +G Sbjct: 151 FLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVG 210 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ ++ +RM +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV AL Sbjct: 211 LSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSAL 270 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M Sbjct: 271 SMEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330 Query: 183 INFDV 187 +NFD+ Sbjct: 331 VNFDI 335 >gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666] Length = 325 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +KR + P+ALD++ R++RAG A+ ++ + +DP+ EFR + + G Sbjct: 141 RAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ +++ M +P ++ +F + +Q + GGNLSE L ++S I+RDR + +V+ L Sbjct: 201 IAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++ LPF + ++ T+P ++ VL DP G +L A M +GI+VMR + Sbjct: 261 SAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243] gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98] gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14] gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91] gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9] gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 325 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210] gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894] gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112] gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215] gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 325 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 335 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 115/187 (61%), Positives = 155/187 (82%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q Sbjct: 149 IGFLIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH ++G +A +M IGI+VMR Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMR 328 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 329 NMVNFDI 335 >gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021] gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 336 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 337 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 107/185 (57%), Positives = 142/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +G Sbjct: 153 FRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMG 212 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV AL Sbjct: 213 LSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAAL 272 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M Sbjct: 273 SMEAKASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKM 332 Query: 183 INFDV 187 +NF+V Sbjct: 333 MNFEV 337 >gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 330 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 266 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325 Query: 183 INFDV 187 I V Sbjct: 326 IRIRV 330 >gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 336 Score = 197 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 335 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 98/187 (52%), Positives = 146/187 (78%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR F + FP A+D+IVR V+AGLP++D + +V DPV SEF++V+E Q Sbjct: 149 LSNRRKKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L ++ R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+Q Sbjct: 209 MGVTLGDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQ 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGS+P V++++Y TSP Y+NVL++DPRG+++L +A +MLIG+++M+ Sbjct: 269 AVSMEAKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMK 328 Query: 181 LMINFDV 187 MINFD+ Sbjct: 329 KMINFDI 335 >gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44] Length = 329 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + Sbjct: 143 LQRKRLQRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ Sbjct: 203 YGTSLHQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS + + SAWI+G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 263 VLSADGRMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322 Query: 181 LMINFDV 187 + V Sbjct: 323 RIARIRV 329 >gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 335 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 114/185 (61%), Positives = 153/185 (82%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +G Sbjct: 151 FLIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVG 210 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQAL Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQAL 270 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M Sbjct: 271 SMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330 Query: 183 INFDV 187 +NFD+ Sbjct: 331 VNFDI 335 >gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 330 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ L Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR + Sbjct: 266 SAEGKLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325 Query: 183 INFDV 187 I V Sbjct: 326 IRIRV 330 >gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43] Length = 325 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P+ D I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P ++ VL DP G +L+G+ A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 339 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K R KF P AL ++ RS++AG + ++ + +P+ EF + + + Sbjct: 153 LHMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFN 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +S +++ + + + LQ++ FF T I++Q + GGNL E L ++ ++RDR + ++ Sbjct: 213 YGLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + S I+ LP ++ ++YF + YM +LI P G M++GVA L+G +++ Sbjct: 273 AITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIH 332 Query: 181 LMINFDV 187 ++N V Sbjct: 333 KIVNIKV 339 >gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL KR AKF + PNA+D++VR +R G+PV D ++ ++ +PVRSEFR V+ETQ Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLSL E+ +R+ +P EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR M+ KVQ Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA II LPF V+ + TSP Y+++L G + L AA +M IGI ++ Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318 Query: 181 LMINFD 186 MI F+ Sbjct: 319 KMIAFE 324 >gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 114/185 (61%), Positives = 153/185 (82%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +G Sbjct: 151 FLIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVG 210 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV AL Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M Sbjct: 271 SMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330 Query: 183 INFDV 187 +NFD+ Sbjct: 331 VNFDI 335 >gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 324 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 128/186 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G ++L +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 322 Score = 196 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F + P ALD + RS+RAG ++ A+ ++ + P+ EF+ V + Sbjct: 136 LSRQANKRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEIS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E++ R+ + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ Sbjct: 196 FGIPFKEAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++GS+PF ++ ++ +P Y +VL + P+GH L+ V A M +G + Sbjct: 256 TLSAEGRISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFFSLN 315 Query: 181 LMINFDV 187 + V Sbjct: 316 RISQIKV 322 >gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 328 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 140/186 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +LIK+R F ++F NA+D+IVR V++GLPV+D + +I +S +PVR+EF+ ++E Q Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L + ++++ MPL EV+FF V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V L+YF+SPGYM+VL + G+M++ +M IG++VM+ Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321 Query: 181 LMINFD 186 MI+F Sbjct: 322 KMIDFK 327 >gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F D P ALD I R++RAG ++ A+ ++ + +P+ EF+ V + Sbjct: 136 LMQLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIG 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E+I R+ M +++FF +++Q + GGNL+E L+R +R R ++ K++ Sbjct: 196 FGIPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +AS W++GS+PF + ++ +P Y+++L RG+ L+ + A M +G +V++ Sbjct: 256 TLSSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLK 315 Query: 181 LMINFDV 187 ++ V Sbjct: 316 RIVQIKV 322 >gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 103/176 (58%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D P ALD I RS+RAG ++ A+ ++ + DP+ EF+ V + G+ ++I Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++FF + +Q + GGNL+E L LS +R R ++ K++ LS E +ASAW Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++GS+PF + ++ +PGY++VL P GH L A M +G +++ ++NF V Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322 >gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110] Length = 330 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 110/187 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H +R A P+ALD++ R++RAG + +V +I + S+P+ EFR V + Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++++ M +PL ++ +F + +Q GGNL+E L NLSR++RDR + A+V+ Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF + L+ +P +M+ L DP G + M+IG +++R Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323 Query: 181 LMINFDV 187 ++ V Sbjct: 324 KIVKIRV 330 >gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 329 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R P ALD+I R++RAG S + + + S+P+ EFR V + + Sbjct: 143 LQRKRNQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AK++ Sbjct: 203 YGTSLQQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF ++ L+ F +P +M+ L DP G ++L A M+IG++++R Sbjct: 263 VLSSEGRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLR 322 Query: 181 LMINFDV 187 ++ V Sbjct: 323 RIVRIRV 329 >gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] Length = 324 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 100/185 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +F P ALD++ R++RAG A+ ++ + DP+ EFR + + + G Sbjct: 140 RARNQHMQRFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + ++S+F + +Q GGNL+E L N+S+I+R R + +++ L Sbjct: 200 VPQQTAMLNLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAWI+G LPF + L+ +PG+M VL DP G + A M++G++ MR + Sbjct: 260 SAEGKLSAWILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKI 319 Query: 183 INFDV 187 I V Sbjct: 320 IRIRV 324 >gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4] gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] Length = 325 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 87/186 (46%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+RT KF +F +A+DI+VR +++GLPV D + +I + P+ EF+R+ E Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L S+ +M MP E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++ Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++Y T+PGYM L+ DPRG+ +L A +ML GI +MR Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319 Query: 181 LMINFD 186 MINF Sbjct: 320 KMINFK 325 >gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH] Length = 325 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 325 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 105/177 (59%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + P+A D+I R++RAG + ++ + DP+ EF V + + G+S+++++ Sbjct: 149 QLERQLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 MV +P++++ +F + +Q + GGNL+E L ++S I+R+R + KV+ LS E + SA Sbjct: 209 NMVSRVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 W++ LPF + L+ +PGY++V DP G L GVA ML GI+ MR ++ + Sbjct: 269 WVLAVLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325 >gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 336 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 110/185 (59%), Positives = 142/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLGVAA ML GI +M+ M Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDM 336 >gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 325 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + +P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 325 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + DP+ EFR + + G Sbjct: 141 RCRGKRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +++ + +P+Q++ +F + +Q + GGNL+E L +S ++R+R + KV+ L Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 324 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++ Sbjct: 198 IGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VM+ Sbjct: 258 AVSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 324 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R FL P+A+D+IVR ++AGLP+ +++ V+V S +P++SEF +IETQ Sbjct: 138 LGFLKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++ Sbjct: 198 VGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VMR Sbjct: 258 AVSTEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMR 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] Length = 325 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 101/185 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+ D+I R++R+G + + ++ + DP+ EFR + + G Sbjct: 141 RCRGRRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L++++ + +P Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VPLNDALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF ++ + +++VL DP G ++G M G++ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR K P +D++ R+++AG S A+ + +P EFR + + G+S Sbjct: 141 KRKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ + +P+ ++ +F + +Q + GGNL+E L +S ++R R + K++ LS Sbjct: 201 VQDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSA 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAWI+ LPF + ++ +PG++ VL DP G M++G A M+IGI VM +I Sbjct: 261 EGRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIK 320 Query: 185 FDV 187 V Sbjct: 321 IRV 323 >gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000] gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15] gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000] Length = 325 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K RT KF + F +A+DIIVR +++GLPV D + +I + +P+ EFR + E Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA+IIG LP V TL+ TSP YM + DPRGH++L +A +M IGI VMR Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318 Query: 181 LMINFD 186 MINF Sbjct: 319 NMINFK 324 >gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 337 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 108/183 (59%), Positives = 141/183 (77%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +GLS Sbjct: 155 RKRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLS 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSM Sbjct: 215 IPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSM 274 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LPF V LVY TSP YM +L GHMLLG+AA ML GI +M+ MIN Sbjct: 275 EAKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMIN 334 Query: 185 FDV 187 FD+ Sbjct: 335 FDM 337 >gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L + R KF + F +A+DIIVR +++GLP+ D + +I +S +P+ EFR + E Sbjct: 139 LSILAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG+LP V L+ TSP YM L DPRGH++L AA +M IG++VMR Sbjct: 259 ALSAEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMR 318 Query: 181 LMINFD 186 MINF Sbjct: 319 KMINFK 324 >gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 329 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + Sbjct: 143 LQRKRLLRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEIN 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ Sbjct: 203 YGTSLQQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS + + SAW +G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 263 VLSADGRMSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322 Query: 181 LMINFDV 187 + V Sbjct: 323 RIARIRV 329 >gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 325 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 320 Score = 193 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R KF + P+A+D++ R++RAG +S A+ V+ +S++P+ EF V + Q Sbjct: 134 LKWKKSSRLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQK 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +++ ++ +P +++SF T I VQ + GG+L++ L +R++R+R ++ +++ Sbjct: 194 FGLQFRDALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIR 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + WI+ +LP + L+ +PGY ++L +DP G +LLG +LIG ++ Sbjct: 254 TYTAQGRLTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIIS 313 Query: 181 LMINFDV 187 +++ V Sbjct: 314 RVVDIKV 320 >gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 326 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 114/185 (61%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR A F P AL+++ R++RAG + + ++V + +DP+R EF+ +E + G Sbjct: 142 MRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFG 201 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ ++ + +++FF + +Q++ GGNL+E + N+S ++R+R +K ++Q L Sbjct: 202 MGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVL 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AW++ LPF V+ ++ F +PGY+ +L DP G ++ A + +GI+V+R M Sbjct: 262 SAEGRMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKM 321 Query: 183 INFDV 187 + +V Sbjct: 322 VRIEV 326 >gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 332 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 127/183 (69%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R AKF NA+D++VR V++GLP+++ + VI +S +P+ EFR V+E Q LG+ Sbjct: 149 LTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLGV 208 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L++++ RM MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ + KV+ALS Sbjct: 209 PLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKALS 268 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EAKASA ++ SLP V +VY +SPGYM L G ++ + A +M IG++VM+ MI Sbjct: 269 AEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKMI 328 Query: 184 NFD 186 NF Sbjct: 329 NFK 331 >gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 338 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 135/183 (73%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K+R +F ++F NA+D+IVR +++GLPV D + +I ++ +PV+SEF +++ Q LG+ Sbjct: 155 RRKRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGI 214 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL E++ R+ +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S Sbjct: 215 SLDEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMS 274 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EAK+SA IIG+LPF VS +Y TSP YM++L + G ++L A +M +GI+VMR MI Sbjct: 275 SEAKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMI 334 Query: 184 NFD 186 NFD Sbjct: 335 NFD 337 >gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 325 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + ++ VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] Length = 331 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 93/187 (49%), Positives = 128/187 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R KF ++F +ALDIIVR V++GLP+++ + +I + PV+ EF+ ++E Sbjct: 145 LGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLA 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV Sbjct: 205 VGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVS 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASAWIIGSLP V +V SP YM L+ P GH LL +ML GI+VMR Sbjct: 265 ALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMR 324 Query: 181 LMINFDV 187 MINF + Sbjct: 325 SMINFKM 331 >gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 324 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +++RT F D +AL +I S+R G ++ ++ + P+ +EF RV+ + Sbjct: 138 LRVKVERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++ E+++ + + + ++ T + +Q Q+GGNL+E L N++ +R R +K +++ Sbjct: 198 LGVTTEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++Y +PGYM +L P G L+ A LIG++++R Sbjct: 258 TLTAQGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIR 317 Query: 181 LMINFDV 187 ++N DV Sbjct: 318 RIVNIDV 324 >gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 324 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 106/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR AKF + P+A+D++ R++RAG + ++ +I + SDP+ EFR + + G Sbjct: 140 RFRHKRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SL E++ + +P ++ + + +Q + GGNL+E L N+S ++R R + ++ L Sbjct: 200 FSLQEAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E K SAWI+ LPF V+ +++ +PG+M VL D G M++ + ML GI MR + Sbjct: 260 AAEGKLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQI 319 Query: 183 INFDV 187 I V Sbjct: 320 IKIQV 324 >gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 335 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 98/186 (52%), Positives = 142/186 (76%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q Sbjct: 149 LSRARKKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQ 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ +SE++ ++ R +P E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQ Sbjct: 209 MGVPISEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQ 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKAS IIG+LP V+ LVY T+P Y++VL GH++L V+ +M G+ VM+ Sbjct: 269 AMSMEAKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMK 328 Query: 181 LMINFD 186 MI+FD Sbjct: 329 KMISFD 334 >gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 325 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R K P+ D+I R++R+G + + ++ + S+P+ EFR + + G Sbjct: 141 RCRARRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ L Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R + Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320 Query: 183 INFDV 187 + V Sbjct: 321 VRIRV 325 >gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 331 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 90/183 (49%), Positives = 121/183 (66%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF F + +D+IVR V++GLP+ + + +I +S P+ +EF+RVI+ +G + Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+S M MPL EV+FF VI +Q Q GGNLSEAL NLS +LR RK + KV+ALS Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LP V LVYF+SP Y+ +L P GH +L V A M GI VM+ M+ Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328 Query: 185 FDV 187 DV Sbjct: 329 LDV 331 >gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 322 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + F P ALDI+ R ++AG PV+ A + + + P+ EF+ + Sbjct: 136 LSKKISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +PGY+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 322 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + + Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +PGY+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 326 Score = 191 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 112/185 (60%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR +F P ALD++ R++RAG + + ++V + ++P+ SEFR +E + G Sbjct: 142 MRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFG 201 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ L Sbjct: 202 MGVTVALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVL 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AW++ LPF V V +PGY+ +L +P G +L+ V M +G++V+R M Sbjct: 262 SAEGRMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKM 321 Query: 183 INFDV 187 + +V Sbjct: 322 VRIEV 326 >gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 322 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 105/183 (57%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR P+ALD++ R++ AG A+ ++ + +P+ SEFR V + + G+ Sbjct: 140 KQKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIP 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 SE++ +++ +P +VS+F + +Q + GGNL+E L N+S ++R R + V+ LS Sbjct: 200 TSEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAWI+ LPF + ++ +P ++++L DP G ++ +A M+ GI VM +I Sbjct: 260 EGRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIK 319 Query: 185 FDV 187 V Sbjct: 320 IRV 322 >gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 324 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 115/187 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R +F P ALD++ R+++AG + ++ + +DP+ EF + ++ + Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + ++++ FF +++Q + GGNL+E +AN++R++R+R + KV+ Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++ +LPF ++ ++YF +P Y+++L + G + A A M++GI+VMR Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317 Query: 181 LMINFDV 187 M+ V Sbjct: 318 RMVKIQV 324 >gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 326 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR + P+A D+I R++RAG A+ ++ + P+ EFR + + Sbjct: 140 LRSRRAKRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEIN 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+++++ +V +P+ +V +F + +Q + GGNL+E L N++ I+R+R + AKV+ Sbjct: 200 CGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVR 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G LPF V + +PGY V D G + GVA + M +G++ +R Sbjct: 260 VLSAEGRLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLR 319 Query: 181 LMINFDV 187 + V Sbjct: 320 KTVRIRV 326 >gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 325 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + A+ ++ + SDP+ EFR + + G+SL Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P++++ +F + +Q + GGNL+E L +++ ++R+R + K++ LS E Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++G LPF + + +P ++ VL D G ++ M G++ MR +I Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] Length = 325 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 104/177 (58%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A+F D P ALD++ R++R+G ++ + ++ + P+ SEF ++ +LGL+ E+ Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + +P ++ FF+ + +Q + GGN++E L ++SR++R+R K +V+AL+ E + S Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LP + ++F + Y+++L +P G +L A ++G +++ ++ + Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIE 324 >gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 334 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 109/187 (58%), Positives = 151/187 (80%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L+K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q Sbjct: 148 LAFLLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + + I RM+ MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV Sbjct: 208 VGIGIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVN 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V LV+FTSP Y+++L D RGH++LG +A +MLIGI +MR Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 QMINFDI 334 >gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 325 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 108/177 (61%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + P+ D++ R++R+G + A+ ++ + ++P+ EFR V + + G+S+SE+++ Sbjct: 149 QLERQLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALT 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P++++ +F + +Q + GGNL+E L ++ ++RDR + KV+ LS E + SA Sbjct: 209 NLATRVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 W++G LPF V + +PG++NVL DP G ++ A+ ML GI+ MR ++ V Sbjct: 269 WVLGLLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325 >gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 327 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 2/189 (1%) Query: 1 MKHLI--KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 ++ L KR P A D+I R++RAG S A+ ++ + ++P EFR V + Sbjct: 139 LRMLRARSKRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDE 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + G++L+E++ + +P++++ FF + +Q + GGNL+E L ++ ++R+R + + Sbjct: 199 INYGVTLNEALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQ 258 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ LS E + SAWIIG LPF + + +P +++VL DP G ++ M+ G++ Sbjct: 259 VRVLSAEGRLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLW 318 Query: 179 MRLMINFDV 187 MR ++ V Sbjct: 319 MRRIVRIRV 327 >gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] Length = 323 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1] Length = 323 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein secretion [Sinorhizobium fredii NGR234] gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 332 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 91/182 (50%), Positives = 131/182 (71%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R +F +FPNA+D+IVR ++AGLP++D + VI ++ +PV+ EF + Q LGL Sbjct: 150 RNRRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLP 209 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ R+ MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S Sbjct: 210 VDEAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSA 269 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK+SA IIG+LPF V+ VY TSP YM++L G M+L +A +M IG ++MR MIN Sbjct: 270 EAKSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMIN 329 Query: 185 FD 186 FD Sbjct: 330 FD 331 >gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147] gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786] Length = 325 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 104/177 (58%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+ L E++ Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ LS E K SA Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ LPF + L+ +P ++ VL DP G +L+GV M GI+ MR +I V Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325 >gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R F P+A++++ R++RAG ++ + V+ + P+ EF RV E Q+ Sbjct: 133 LHMKRSSRLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQN 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M +P ++ FF T +++Q Q GG+L+E L + I+R+R + +V+ Sbjct: 193 LGIPLEEALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ +LP + ++ +T P Y+ +L D G + A MLIG ++ Sbjct: 253 ALTAEGRLSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIK 312 Query: 181 LMINFDV 187 +++ V Sbjct: 313 KIVDIKV 319 >gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 99/185 (53%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R F P+AL ++ ++++G A V+ + P+ EF +++ + Sbjct: 217 RRYRQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVN 276 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L Sbjct: 277 IPLEDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTL 336 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S WI+GSLP + L+ +P Y+ L+ P G MLLG + G++V+R + Sbjct: 337 TAQGRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRAL 396 Query: 183 INFDV 187 I D+ Sbjct: 397 IRVDI 401 >gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] Length = 323 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 333 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++ Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326 Query: 181 LMINFD 186 MINFD Sbjct: 327 KMINFD 332 >gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31] gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31] Length = 325 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 128/184 (69%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K RT KF + F +A+DIIVR +++GLPV+D + +I + +P+ EFR ++E +G Sbjct: 141 MMAKARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+ +++ RM MP E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M K++AL Sbjct: 201 MSMDQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKAL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EA ASA+IIG+LP V L+ T+P YM + D RGH++L VAA +M +GI VMR M Sbjct: 261 SAEAVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKM 320 Query: 183 INFD 186 INF Sbjct: 321 INFK 324 >gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645] gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645] Length = 320 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K R AKF P+AL++I R++RAG + ++ +S DP+ EF +V E Q+LG Sbjct: 136 FKRKARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++I+ M +P ++ FF T I +Q Q GG+L+E L + R++R R + +QAL Sbjct: 196 VSLEDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ LP + ++ +PGY+ L DP G+ +L VA LIG V++ + Sbjct: 256 TGEGRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKI 315 Query: 183 INFDV 187 I+ V Sbjct: 316 IDIKV 320 >gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] Length = 323 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 333 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++ Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326 Query: 181 LMINFD 186 MINFD Sbjct: 327 KMINFD 332 >gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10] Length = 327 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 126/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R +F +F NALD+I R V++GLP+++ + ++ +S +PV++EF +++E Sbjct: 141 LGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIA 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL + + RM MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ Sbjct: 201 VGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIG 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIGSLP V +VY T+P YM + P G ++L +M IGIMVMR Sbjct: 261 ALSSEAKSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMR 320 Query: 181 LMINFDV 187 MINF + Sbjct: 321 GMINFKI 327 >gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 321 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + ++ PGY++ L DPRG ++ + +G + MR Sbjct: 255 TISAESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 HIINFEV 321 >gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 322 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +PGY+ L DPRG L+ + G + +R Sbjct: 256 TLSAESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 KIINFEV 322 >gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 334 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 107/187 (57%), Positives = 152/187 (81%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q Sbjct: 148 LGFILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + + I RM+ +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV Sbjct: 208 VGIGIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVN 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V LV+FTSP Y++VL D RGH++LGV+ +MLIGI +MR Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMR 327 Query: 181 LMINFDV 187 MINFD+ Sbjct: 328 QMINFDI 334 >gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 339 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 132/182 (72%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R FL++ PN +DIIVR V+AGLP+SD V V+ ++ +PV +EFR+V ETQ +G+S Sbjct: 157 RKRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVS 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++S+M +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS Sbjct: 217 LAEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSS 276 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK+SA IIG+LPF V +++F +P YM +L G +++ +M GIMVMR MIN Sbjct: 277 EAKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMIN 336 Query: 185 FD 186 FD Sbjct: 337 FD 338 >gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] Length = 340 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 131/182 (71%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R FL++ PN +DIIVR V+AGLP+SD + V+ ++ DPV +EFR++ ETQ +G+S Sbjct: 158 RKRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGIS 217 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ ++ +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS Sbjct: 218 LADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSA 277 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK+SA IIGSLPF V ++Y SP Y+ VL G++++ +M GIMVMR MIN Sbjct: 278 EAKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMIN 337 Query: 185 FD 186 FD Sbjct: 338 FD 339 >gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 321 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L +DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 327 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 2/189 (1%) Query: 1 MKHLI--KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 ++ L +KR P A D+I R++RAG S A+ ++ + ++P+ EFR V + Sbjct: 139 LRMLRARRKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDE 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + G++L+E++ + +P+ ++ +F + +Q + GGNL+E L +++ ++R R + K Sbjct: 199 INYGVTLNEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDK 258 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V+ LS E + S WI+ LPF + + +P + +VL DP G ++ M++GI+ Sbjct: 259 VRVLSAEGRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILW 318 Query: 179 MRLMINFDV 187 MR ++ V Sbjct: 319 MRRIVQIRV 327 >gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 325 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL +++ Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E + SA Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ + +++VL DP G + G M+ G+ MR +I V Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325 >gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 327 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G Sbjct: 143 RARSKRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L+E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + +V+ L Sbjct: 203 VTLNEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LPF + + +P +++VL DP G L+ M G++ MR + Sbjct: 263 SAEGRLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRI 322 Query: 183 INFDV 187 + V Sbjct: 323 VRIRV 327 >gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CMR15] Length = 325 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 95/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + + P A D++ R++RAG + A+ + + P+ +E V + G Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ L Sbjct: 201 VPMGDALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP V +VY +P ++ L DP G +L A +G++ +R + Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1] gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1] Length = 347 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G Sbjct: 163 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 222 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL Sbjct: 223 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 282 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ + Sbjct: 283 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 342 Query: 183 INFDV 187 I V Sbjct: 343 ITIKV 347 >gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 340 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F+++ PN +DIIVR V+AGLP+ D V V+ ++ DPV +EF +++ETQ Sbjct: 154 INRRRKKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQK 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SL+E+ ++ +PL E +FF+ V+++Q GG LSEAL NLSR+LR RK +K K+ Sbjct: 214 MGVSLAEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIV 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIG++P +S ++F +P Y+N+L+ GH+++ +MLIGI+VMR Sbjct: 274 ALSSEAKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMR 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 QMINFD 339 >gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 339 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR +FL++FPNA+DIIVR +++G+P+ D + + ++ DPV +EF V++ Sbjct: 153 VSRARKKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQ 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L+E+I + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++ Sbjct: 213 MGMPLAEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIR 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAK+SA IIGSLPF V+ L++ SP Y+ +L++ G +L+G+ +M IGI+VMR Sbjct: 273 AVSQEAKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMR 332 Query: 181 LMINFDV 187 MI+F + Sbjct: 333 KMIDFKI 339 >gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 327 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 88/172 (51%), Positives = 126/172 (73%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +FPNA+D+IVR V+AGLP+ D + ++ ++ +PV+SEFR ++E Q LG+ L +++ R+ Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 MPL E FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LP V +LVY TSP YM +L P G +L +ML+G ++MR MINFD Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326 >gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 136/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R A F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL +S++I RM +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M K+Q Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF + Y +SP Y ++L G + L ++ +ML G++VM+ Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316 Query: 181 LMINFDV 187 MI+FDV Sbjct: 317 KMISFDV 323 >gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 319 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 101/186 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KR KF D +AL I+ S+RAG A+ + + P+ +EF R ++ Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+++ M + ++ T +++Q Q+GGNL+E L N+ + +R MK +++ Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ LP + ++ +P Y+ +L P G +L+G A LIGIM+++ Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312 Query: 181 LMINFD 186 +IN + Sbjct: 313 KVINIE 318 >gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218] Length = 321 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + PGY++ L DPRG L+ + +G + MR Sbjct: 255 TISAESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 HIINFEV 321 >gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 186 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 90/187 (48%), Positives = 127/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R K ++ F +ALDIIVR VR+GLP+++ + VI +S +P+R EF + Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+ Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASA IIGSLP V +V+ T+P Y+ L GH++L VA M GI VMR Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 333 NMMNFDM 339 >gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 337 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 107/185 (57%), Positives = 146/185 (78%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PVR+EFRR++E Q LG Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++E+ RM MP EV+FF V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LP V+ LVY TSP Y+ L ++ GH++LG++A +M IGI VMR M Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332 Query: 183 INFDV 187 +NF+V Sbjct: 333 MNFEV 337 >gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 332 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KKR A F FPNA+D+IVR +++GLP++D + +I S +PVR EFR++IE Sbjct: 146 VKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQ 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ R+ + +P E +FFS VI++QS GGNLSEAL NLS++LR+R+ M K+Q Sbjct: 206 MGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQ 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S EAK S IIG+LPF V+ +V+ TSP Y+ L GH +L A M GI+VM+ Sbjct: 266 AFSSEAKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMK 325 Query: 181 LMINFD 186 MINF Sbjct: 326 KMINFK 331 >gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R KF P ALD++ R+++AG S + ++ + DP+ EF + ++ + Sbjct: 135 LMSRRKQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+++++ + + ++S+F + +Q + GGNL++ +A+++ ++R+R + +++ Sbjct: 195 FGVSVADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E +ASA I+ ++P V+ + S Y+ L +D G +L+G+A M+ G++VMR Sbjct: 255 VLSAEGRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMR 314 Query: 181 LMINFDV 187 MI DV Sbjct: 315 KMIRIDV 321 >gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 325 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 96/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + + P A D++ R++RAG + A+ + + P+ +E V + G Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ L Sbjct: 201 VPMNDALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP V +VY +P ++ L DP G +L A +G++ +R + Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 332 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 93/179 (51%), Positives = 130/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AKF +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G ++L +M IGI+VMR MINFD Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331 >gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 321 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R A F P AL++I R++RAG ++ ++ + P+ EF R E Q+LG+ Sbjct: 139 RNRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVP 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+I M +P ++ FF+T + +Q Q GG+L+E L + ++R+R + ++QAL+ Sbjct: 199 LEEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTG 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S ++ +LP + +++ + Y L DP GH +L A LIG +V+R ++N Sbjct: 259 EGRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVN 318 Query: 185 FDV 187 V Sbjct: 319 IKV 321 >gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 327 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 55/185 (29%), Positives = 112/185 (60%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR A F P AL+++ R+++AG S + ++V + ++P+R EF++ +E + G Sbjct: 143 MRKAKRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ L Sbjct: 203 MGVTVALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVL 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AW++ LPF V V +PGY+N+L + G L + A M +G++V+R M Sbjct: 263 SAEGRMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKM 322 Query: 183 INFDV 187 + DV Sbjct: 323 VRIDV 327 >gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 321 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 322 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 106/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP ALD++ R++RAG AV ++ + +DP+ +FR + + + G+ +++++ + Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ +VS+F + +Q + GGNL+E L +S I+R+R + +V+ LS E K SA I+ Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LPF V +V +P +M VL DP G ++G+A ML+GI+ MR +I V Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322 >gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 321 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ +EF+ + Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L NDPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 RIISIEI 321 >gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] Length = 323 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 118/185 (63%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KRTA F FP+A++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G Sbjct: 139 FFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ E + + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+ Sbjct: 199 KTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAM 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E+KASA+I+G+LPF V ++++ +P Y++ D R ++ +M IG +M M Sbjct: 259 SSESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDERLIVIGLGGMVWMSIGAFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 337 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 123/186 (66%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R KF ++FPNA+DI+VR +++GLPV D + +I +S P+ EF R++E Sbjct: 151 LGMMATGRLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVG 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S+ ++ +M +P E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ Sbjct: 211 VGMSVEGALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIK 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++ T P Y+ + DPRG ++L A +M +GI +MR Sbjct: 271 ALSSEAIASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMR 330 Query: 181 LMINFD 186 MINF Sbjct: 331 KMINFK 336 >gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47] Length = 321 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G Sbjct: 137 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL Sbjct: 197 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ + Sbjct: 257 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 316 Query: 183 INFDV 187 I V Sbjct: 317 ITIKV 321 >gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 188 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL++ ++I RM +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 62 LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V+ Y +SP Y +L G + L ++ +M +GI VM+ Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181 Query: 181 LMINFDV 187 MI+FDV Sbjct: 182 KMISFDV 188 >gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 321 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR +F P+A++++ R++R+G ++ + ++ + P+ FR ETQ+ Sbjct: 135 LSFRRKKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + ++ ++ MP + FF T +++Q Q GG+L+E L +S ++R+R + VQ Sbjct: 195 LGVPVESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQ 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ ++P + VY+ +P Y+ VL G ++ V ++G + ++ Sbjct: 255 ALTGEGRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIK 314 Query: 181 LMINFDV 187 +I+ V Sbjct: 315 KIIDIKV 321 >gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] Length = 325 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 92/177 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A D++ R++RAG A+ + + P+ SEF V + G+ + E+++ Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R +P++++ F + +Q + GGNL+E L N+ ++R R + K++ LS E + Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ +P + L+YF +P ++ L P G LL A +G++ +R ++ V Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325 >gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 288 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + P+ EF + + Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + M++G++ +R Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281 Query: 181 LMINFDV 187 ++ +V Sbjct: 282 KILRIEV 288 >gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 232 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 46 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 105 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 106 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 165 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 166 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 225 Query: 181 LMINFDV 187 +I+F+V Sbjct: 226 KIISFEV 232 >gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] Length = 323 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 117/185 (63%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 IKKRT +F F +A++++VR +R+GLPV++ + V+ + PV EF+ ++E +G Sbjct: 139 RAIKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ ES+ + + E +FF +++Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 199 RTMEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAM 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E+KASA+I+GSLPF V L+++ +P Y+ D R + +M IG+ +M M Sbjct: 259 SSESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDRLIVTGLGGLTWMGIGVFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 321 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 104/184 (56%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R +F P+ALD+I R+++AG + ++ + +DPV EF+ ++ + G+ Sbjct: 138 RRTRRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGV 197 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++ M R + ++ FF +++Q + GGNL+E ++ ++ +LR+R + +V+ LS Sbjct: 198 SPDAALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLS 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +AWI+ +LPF + +++ +P +M+ L P G+MLL + M G + ++ + Sbjct: 258 AEGRLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLT 317 Query: 184 NFDV 187 V Sbjct: 318 TIRV 321 >gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii] gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii] Length = 313 Score = 183 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 105/186 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R A F P+ALD++ RS+RAG + ++ + P+ +EFR V+E Sbjct: 127 LSWRAAARRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S++E++ R+ + ++FF T + +Q + GGNL+E L +SR+ R R + AKV+ Sbjct: 187 FGVSVTEALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA I+ +LPF + L+ +P Y+ +L DP G ++ V MLIG +V + Sbjct: 247 AVSAEGRLSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTK 306 Query: 181 LMINFD 186 M+ Sbjct: 307 RMVTVR 312 >gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 322 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 93/187 (49%), Positives = 138/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R AKF++ FP ++DII+R ++AGLPV D +I ++ +PVRSEFR+++E+Q Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E+ R MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+ Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V V+FT+ YM VL + G+M++ + +M +G+ +M+ Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315 Query: 181 LMINFDV 187 MI+F++ Sbjct: 316 NMIDFEI 322 >gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 314 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +L ++R A F + P L+I+VRS+RAG P+ A + Q DP SE + Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + R + +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R ++ +V+ Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA + PF ++ L+ +P Y + +P + L VA ++IG +V+ Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307 Query: 181 LMINFDV 187 ++NF + Sbjct: 308 RIVNFRI 314 >gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 110/186 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF P+ALD+IVRS+RAG P + A+ ++ + DP+ +EF V + Sbjct: 138 LRRARNKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEIT 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GLSL +++ ++ + + + + S +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ Sbjct: 198 FGLSLEQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWII P + ++ +P + + + P + + + L+G +M Sbjct: 258 ALSAEGRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMY 317 Query: 181 LMINFD 186 M+NFD Sbjct: 318 RMVNFD 323 >gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4] Length = 321 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 108/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G Sbjct: 137 RKRDRRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ L Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316 Query: 183 INFDV 187 V Sbjct: 317 TTIRV 321 >gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099] gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099] Length = 323 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 111/186 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF P+ALD+IVRS+RAG P + A+A++ + DP+ +EF V + Sbjct: 137 LRSARDKRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEIS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GLSL +++ ++ + + + S +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ Sbjct: 197 FGLSLEQAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWII P + ++ +P + + +P + + ++ L+G +M Sbjct: 257 ALSAEGRMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMY 316 Query: 181 LMINFD 186 M+NFD Sbjct: 317 RMVNFD 322 >gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 309 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 99/186 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR KF D ++L ++ +RAG + AV + Q+ P EF R++ Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++++ + M ++ S+ S I + ++GG+L++ L + R +R+R ++ +V+ Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA+++ +LP + ++ SP Y+ + P G ++ M +G + ++ Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302 Query: 181 LMINFD 186 +++F Sbjct: 303 KIVSFK 308 >gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 324 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 113/185 (61%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR F+ P+ALD++VR +R+GLPV++ + V+ + PV EF+ V + +G Sbjct: 140 RAINKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ E++ + L E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+ Sbjct: 200 RTMEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E+KASA+I+G+LPF V L+Y+ +P Y+ D R + ++ IG +M M Sbjct: 260 SSESKASAYIVGALPFIVFALIYWINPVYLGKFFVDERLIIAGLGGLTWLGIGAFIMAKM 319 Query: 183 INFDV 187 ++F++ Sbjct: 320 VSFEI 324 >gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 320 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R+ K + P AL+++ RS+RAG ++ A V+ G+ +PV EF R + Q LGLS Sbjct: 137 RSRRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLS 196 Query: 65 LSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ M P +V F+ +Q + GGNL+E L +S +R R K++AL+ Sbjct: 197 LEQAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALT 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E +ASAW++G LPF V+ V +PGY+ L +P GH ++G A +GI+ +R + Sbjct: 257 GEGRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLT 316 Query: 184 NFDV 187 ++ Sbjct: 317 QLEI 320 >gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040] Length = 322 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNSKAKKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P V + P Y + +I+ P + + I VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMR 315 Query: 181 LMINFDV 187 + N V Sbjct: 316 KLTNIQV 322 >gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str. Hildenborough] gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 321 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 108/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G Sbjct: 137 RKRARRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ L Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316 Query: 183 INFDV 187 V Sbjct: 317 TTIRV 321 >gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 325 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 98/174 (56%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+S Sbjct: 143 RRRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS Sbjct: 203 LHDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 E + SAWI+G LPF + ++ + +++VL DP G ++G M G++ Sbjct: 263 EGRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLLW 316 >gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 324 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + PV EF + + Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + A ML+G++ +R Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317 Query: 181 LMINFDV 187 ++ +V Sbjct: 318 KILRIEV 324 >gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 327 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 100/181 (55%), Gaps = 1/181 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF P+ALD++ R+++AG + ++ + DP+ EF +V+E + G+ + E Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206 Query: 68 SISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ FF+ + +Q + GGNL+E L +++RI+R+R + ++ LS E Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA I+ ++PF V+ + +P Y+ VL DP G L + M +GI +M+ I Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 322 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 116/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + F FP A++++ R++RAG S + ++ + +PV SEF + E Sbjct: 136 VSKIKAKRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R ++ V+ Sbjct: 196 FGKTMEEALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + S WI+ +P + ++Y+++P Y+N+ + +P G +L A ++GI+V++ Sbjct: 256 ALSAEGRLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIK 315 Query: 181 LMINFDV 187 +I V Sbjct: 316 QIIKMRV 322 >gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum JL354] Length = 323 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 69/185 (37%), Positives = 120/185 (64%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +K+RTA+F FP+A+D++VR +R+GLPV++ +AV+ + PV EF+ +IE +G Sbjct: 139 FFMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ E++ + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+ Sbjct: 199 RSMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAM 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E+KASA+I+GSLPF V ++++ +P Y+ D R + +M +G+ +M M Sbjct: 259 SSESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDERLMIAGIGGLVWMSLGVFIMSKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 323 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 99/176 (56%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F+ P LD++ RS++AG + + + + DP+ EF ++ + G+ + +++ + Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + +++FF + +Q + GGNL+E + +++ ++R+R KV+AL+ E S W Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ LPF + ++ F +P Y+ +L + GH+++ A M+IG MR ++ DV Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323 >gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum gilvum SL003B-26A1] gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum gilvum SL003B-26A1] Length = 339 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR FL++ PNA+DIIVR V+AGLP+ D + ++ ++ DPV EFR+++E Q Sbjct: 153 LARRRRKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQV 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L+E++ R+ +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ Sbjct: 213 MGLTLTEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIR 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAK+SA IIGSLPF VS ++Y +P Y+ +L + G+M++ +M IG MVM+ Sbjct: 273 ALSSEAKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMK 332 Query: 181 LMINFD 186 MINFD Sbjct: 333 NMINFD 338 >gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 322 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNSKAKKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECS 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P P Y + +++ P + + I VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMR 315 Query: 181 LMINFDV 187 + + V Sbjct: 316 KLTDIQV 322 >gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 323 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KR F+ FP+AL+++VR +R+GLP+S+ + V+ + PV EF+ V + Sbjct: 137 VSWAINKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIR 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ + L E SFF +++Q + GGNL+E LANL+ +LR R MK K++ Sbjct: 197 LGRTMEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V L+Y +P Y+ D R + ++ +G +M Sbjct: 257 AMSSESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDERLMVAGIGGLIWLSMGAFIMS 316 Query: 181 LMINFDV 187 M+NF++ Sbjct: 317 RMVNFEI 323 >gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 322 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS+ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVSLFIGTIWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 321 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ R +F P+ALD+I R+++AG + + ++ + +DP+ EF++ ++ + Sbjct: 135 VQRKRNARMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ ++ + R + ++ FF +++Q + GGNL+E + N++R++R+R + +V+ Sbjct: 195 FGIPADAALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + +AWI+ LPF + ++ +P +M+ L P G+MLL + M IG + ++ Sbjct: 255 VLSAEGRLTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314 Query: 181 LMINFDV 187 + V Sbjct: 315 RLTTIRV 321 >gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLLW 316 >gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 321 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + F +P Y+ L D RG L+ + + G + +R Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 NIINFEV 321 >gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] Length = 325 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + PV E V + G+S++++++ + Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca bermudensis HTCC2601] gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. HTCC2601] Length = 321 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 105/183 (57%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A + P+A++++VRS+R G P S A+AV+ + DP+ +EF + + G Sbjct: 139 AKKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ES+ M + +Q++ F + +S+Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 199 IGESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S + P V ++ T P Y + +++ P + A F+ + +MVMR+++N Sbjct: 259 EAQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVN 318 Query: 185 FDV 187 V Sbjct: 319 IKV 321 >gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 323 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 108/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + + Sbjct: 137 IRIKRQKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E++ M + + ++ T + +Q Q+GGNL+E + N++ +R+R +K +++ Sbjct: 197 LGTQAEEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S ++IG LPF ++T++ SP Y+ L N G +++G+A +IG+M ++ Sbjct: 257 TLTAQGRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIK 316 Query: 181 LMINFDV 187 ++N +V Sbjct: 317 KIVNIEV 323 >gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] Length = 322 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LSRILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMISLFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] Length = 322 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 325 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ + Sbjct: 151 ETQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 316 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 99/186 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+F + L ++ +RAG V A+ + ++S+P +EF RV+ Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +S++ + M ++ ++ + I + ++GG+L+E + +R+R +K V+ Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA I+ +LP + L+ +P Y L P G M+LG+A M IG + +R Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309 Query: 181 LMINFD 186 + + Sbjct: 310 KISDLK 315 >gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] Length = 322 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R ++F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + Sbjct: 136 LNKRISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L DPRG L+ + IG M +R Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 NIINFEV 322 >gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 327 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 68/187 (36%), Positives = 117/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +RT KF+ FP+A++++VR +R+GLP+++ ++V+ + PV EFR V + Sbjct: 141 VSMTINRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMK 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ ++ + E FF I++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 201 IGRTMDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+IIG+LPF V +++ + YM DPR ++ G +M +G+ +M Sbjct: 261 AMSSESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMS 320 Query: 181 LMINFDV 187 MINF++ Sbjct: 321 RMINFEI 327 >gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + +P+ EFR + + Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLLW 316 >gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] Length = 323 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF P+++D++ R++RAG V+ A+ V+ Q +PV SEF V Q+ Sbjct: 137 LNFQRAQRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +++ ++ +P ++ F T + VQ + GGNL+E L + ++R+R ++ +V+ Sbjct: 197 FGLPFRDAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + I+ LP + L+ +P Y L DP G +L A + +G + Sbjct: 257 TKTAQGRLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFIN 316 Query: 181 LMINFDV 187 ++ +V Sbjct: 317 KIVKIEV 323 >gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 321 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + SP Y+ L DPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 KIISIEI 321 >gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 137/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I ++ DPV++EFR ++E+Q Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL L E+ +++ MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L Y +SP Y+++L G + + + +MLIG++VM+ Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 322 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 62/185 (33%), Positives = 108/185 (58%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KR KF P+ALD+IVRS+RAG P S A+ ++ + DP+ +EF V + Sbjct: 137 RRARNKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITF 196 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS+ +++ ++ + + + + S +S+QS+ GGNL+E LANLS ++R+R+ ++ K++A Sbjct: 197 GLSIEQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRA 256 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS E + SAWII P + + +P Y + ++P + + + L+G +M Sbjct: 257 LSAEGRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYR 316 Query: 182 MINFD 186 M+ FD Sbjct: 317 MVTFD 321 >gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 320 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F +AL I+ S+RAG A+ ++ + P+ EF R + + Sbjct: 134 VKAAKQKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMN 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ + + +++ T + +Q Q+GGNLS+ L +S +R+R +K +++ Sbjct: 194 LGTATEEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G+LP + ++ +PGY+ +L +D G +L+ LIG+ +++ Sbjct: 254 TLTAQGRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIK 313 Query: 181 LMINFDV 187 +++ V Sbjct: 314 KIVDIKV 320 >gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 322 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 322 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+R A + P+A++++VRS+R G P S A+ ++ + +DP+ +EF + + Sbjct: 136 VNKKAKQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E++ + M +Q++ F + +S+QSQ GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVTEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + PF + P Y + + P V A F+ I I+ M+ Sbjct: 256 AITAEAKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 MMVNIKV 322 >gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] Length = 325 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 94/175 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ + Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 317 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 104/179 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L + Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+++S E + Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A + PF + ++ +P Y + + + G +++ M IG +++ M+NF+ Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316 >gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 328 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR A F + P+ALD + R++RAG P ++ + ++ + PV EF + G Sbjct: 146 RNKRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGND 205 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ ++ MP V T I + + GGNL+E L LSR++R R + K++ LS Sbjct: 206 VRRAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSA 265 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAW++ ++PF ++ + TSP YM VLINDP GH L+ A MLIGI ++ +I Sbjct: 266 EGRMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIR 325 Query: 185 FDV 187 V Sbjct: 326 IQV 328 >gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 323 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + Sbjct: 137 LRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E++ M + + ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 197 LGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +++ + + S +IG LPF ++ L+ SP Y+ L N G +++ A +IG++ ++ Sbjct: 257 SITAQGRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIK 316 Query: 181 LMINFDV 187 +++ +V Sbjct: 317 KIVDIEV 323 >gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 121/184 (65%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+R A+F F +ALDI+VR +R+GLP+ + +A+I + +P+ EFR V+E Q LG Sbjct: 95 WLGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL ES++R V P + +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A Sbjct: 155 LSLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAF 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EA ASA IIGSLP V+ L+ P Y+ +L + P GH+LL M +G +VMR M Sbjct: 215 SSEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKM 274 Query: 183 INFD 186 INFD Sbjct: 275 INFD 278 >gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 322 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 329 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H +R F +AL I+ ++RAG A+ + + P+ +EF + Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ES+ + + ++ T + +Q Q+GGNL++ L N+SR +RDR +K +++ Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++ +PGYM + +P G LL AA L G+ V++ Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322 Query: 181 LMINFDV 187 +++ DV Sbjct: 323 KIVDIDV 329 >gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] Length = 317 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LR R +KAKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + L + G ++ V M IG +++ M Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 LS E + SAWI+G LPF + ++ + +++VL DP G ++G M +G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLLW 316 >gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 322 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ SEF + + Sbjct: 136 VNSKAKKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ + + LQ++ F + +++Q Q GGNL+E LA L+ ++R R + +V+ Sbjct: 196 YGRDMGEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P + P Y + +++ P A F+ + ++VMR Sbjct: 256 AITAEAQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++ V Sbjct: 316 KLVDIKV 322 >gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771] Length = 317 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + ++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + + G ++ A M +G +++ M Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 321 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +I+F+V Sbjct: 315 KIISFEV 321 >gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 324 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP ALDI+ R ++AG DA+ + + P+ EF+ + + Sbjct: 138 LNRDFNKRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + +P FST + VQ + GGNL+E L NL+RI+R R + +V+ Sbjct: 198 YGKDTRRALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S + + SAW++ +P + +Y +SP Y L + G+ LL +A MLIGI + Sbjct: 258 TFSAQGRMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWIS 317 Query: 181 LMINFDV 187 +I +V Sbjct: 318 RLIRIEV 324 >gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] Length = 330 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 128/187 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF ++F NA+D+IVR V++GLPV++ + +I + PV+ EF+ ++E Q Sbjct: 144 LYQTRRKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L +S+ R+ MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M K+ Sbjct: 204 IGLTLEQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA I+ ++PF VS LVY +P Y+ L + G +L A +MLIGI+VM+ Sbjct: 264 ALSMEAKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMK 323 Query: 181 LMINFDV 187 MI+ V Sbjct: 324 NMISIKV 330 >gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I] gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I] Length = 322 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P + AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDIGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + P Y + +++ P + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLAGILVKDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649] gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649] Length = 654 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF P+ L ++ ++ +G ++ A+ + S+ P EF R + Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +S+++ M M + + + + I +Q +GGNL++ L + LR+R+++K +V Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SA+I+ LP + + +++P Y ++L G ++L + M+IG + MR Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647 Query: 181 LMINFDV 187 +I +V Sbjct: 648 KVIQIEV 654 >gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 322 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R A F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + Sbjct: 136 LNKRISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L DPRG L+ + IG + +R Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIR 315 Query: 181 LMINFDV 187 +INF+V Sbjct: 316 NIINFEV 322 >gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512] Length = 317 Score = 177 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 103/184 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R F P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G Sbjct: 133 RARARRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + + G L+ A M IG +++ M Sbjct: 253 SSEGRITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 321 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 98/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + + P+A++++VRS+R G P + A+ ++ + DP+ +EF + + G Sbjct: 139 AKKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 199 IGEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S + P + P Y + +++ P + + + ++VMR ++N Sbjct: 259 EAQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVN 318 Query: 185 FDV 187 V Sbjct: 319 IKV 321 >gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA] gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA] Length = 325 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 322 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + + +Q Q GGNL+E LA L++++R R + +V Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + +++ P + + ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPVFCLVFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 ILTNIKV 322 >gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 325 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 660 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F D P+AL ++ S+R+G V+ +V + G P+ E R + Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ + M +++ + I +Q ++GGNLSE + + +R+R ++ +++ Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP L+ + P YM L P G ++ +A + +G + + Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653 Query: 181 LMINFDV 187 ++ +V Sbjct: 654 KVVKVEV 660 >gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] Length = 321 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I KR + FP ALDI+ R ++AG SD++ ++ + + EF+ + + Sbjct: 135 LNRNINKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRIN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ V+ +P F + +S+ + GGNL+E + NLSRI+R R K +V+ Sbjct: 195 FGNDVHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + S W++ PF + ++Y +SP Y ++LIN P G LL ML+GI + Sbjct: 255 TLSAEGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWIS 314 Query: 181 LMINFDV 187 +I +V Sbjct: 315 KLIKIEV 321 >gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 320 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + P+A++++VRS+R G P + A++++ + DP+ SEF + + G Sbjct: 138 AKKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRD 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ Sbjct: 198 IGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITA 257 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P ++ P Y + ++ P F+ + ++VMR + + Sbjct: 258 EAKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHPLFIPGCIAVVLFLSLNLIVMRKLTD 317 Query: 185 FDV 187 V Sbjct: 318 IKV 320 >gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] Length = 323 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 117/187 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKRT F F + ++++VR +R+GLPV++ +AV+ + PV EF+ ++E Sbjct: 137 VSFFIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIK 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +S+ + + E +FF+ +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 197 IGKTMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+I+GSLPF V L+Y +P Y+ + R + +M IGI +M Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEERLMVTGLGGLVWMSIGIFIMA 316 Query: 181 LMINFDV 187 M++F++ Sbjct: 317 KMVSFEI 323 >gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45] gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45] Length = 321 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 105/183 (57%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR + + P+A++++VRS+R G P S A++V+ + DP+ +EF + + G Sbjct: 139 ARKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ES+ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 199 IGESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S + P V ++ T P Y + +++ P + A F+ + ++VMR+++N Sbjct: 259 EAQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVN 318 Query: 185 FDV 187 V Sbjct: 319 IKV 321 >gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 106/185 (57%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R +F P AL++I R ++AG PV A+A++ + DP+ +EF + + Sbjct: 136 RFMRKRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTY 195 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A Sbjct: 196 GSDLVSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRA 255 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +S E + SA+I+ ++P + + PG+ + ++P+ L+G + ++++G ++M Sbjct: 256 ISTEGRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFK 315 Query: 182 MINFD 186 M NF Sbjct: 316 MSNFR 320 >gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 322 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P AL+II +RAG A+AV+ + P+ EF RV+ LG S+ Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M +++ T + +Q Q+GGN++E L + +R+R +K +++AL+ + Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA II LP V+ L+ +P YM L+ +P G M+L +A ++GIM++R ++ + Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 322 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + PGY + +I+ P V A + + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] Length = 322 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R KF + P ALDII R ++AG P++ + + S P+ EF + Sbjct: 136 IQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAW++ PF + ++ P Y+ +L P G ++ + IG + +R Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315 Query: 181 LMINFDV 187 ++N +V Sbjct: 316 KIVNIEV 322 >gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] Length = 320 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KR + + P+A++++VRS+R G P S+A++++ + DP+ SEF + + Sbjct: 134 VSHKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 194 YGRDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P ++ P Y + + + P + F+++ + VMR Sbjct: 254 AITAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMR 313 Query: 181 LMINFDV 187 ++ N V Sbjct: 314 ILTNIKV 320 >gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 282 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L N+P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 284 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 98/185 (52%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K P+ L ++ S+RAGL + A+ + + P+ EF V+ Q +G Sbjct: 100 WLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMG 159 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ +P+Q+V+ F + +++ ++GGNL+E+L +L+ LR R M+ KV++L Sbjct: 160 VKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSL 219 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ +P + T + P M+ L + P G ++ VA +G + + Sbjct: 220 TAQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKI 279 Query: 183 INFDV 187 + D+ Sbjct: 280 VTIDI 284 >gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 105/184 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G Sbjct: 133 RARARRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYG 192 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+A+ Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAI 252 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + +A + PF + ++ SP Y + + G +++ V A M IG +++ M Sbjct: 253 SSEGRITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKM 312 Query: 183 INFD 186 +NF+ Sbjct: 313 VNFE 316 >gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11] gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11] Length = 322 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR + + P+A++++VRS+R G P + AV ++ + DP+ +EF + + Sbjct: 136 VNKKAAKRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + P + PGY + +I+ P V A + + + VMR Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 324 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/187 (38%), Positives = 112/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A+F+ FP+A++++VR +RAGLP+++ + + + PV SEF+ V + Sbjct: 138 LNILAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMR 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L ++ + E FF +++Q + GGNL+E L NL+ +LR R MK K+ Sbjct: 198 IGRTLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKIS 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E+KASA+IIG LPF V L+ F SP YM D R + +M IG +MR Sbjct: 258 AMSSESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQRLMIAGAGGLIWMSIGAYIMR 317 Query: 181 LMINFDV 187 MINF++ Sbjct: 318 QMINFEI 324 >gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 323 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF P+AL+++ R++R+G +S ++V+V + P+ +EF E Q+ Sbjct: 137 LLFRRNRRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M+ MP ++ FF T + +Q Q GG+L+E L + I+R R + +VQ Sbjct: 197 LGIPIGEALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + S ++ +LP + VY+ +P Y+ +L D G ++ ++G + ++ Sbjct: 257 ALTGEGRISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIK 316 Query: 181 LMINFDV 187 ++N + Sbjct: 317 KIVNIKI 323 >gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 623 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 104/186 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616 Query: 181 LMINFD 186 +++ Sbjct: 617 KVVSVK 622 >gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 322 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVAECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P ++ P Y + + P V AF++ ++ M+ Sbjct: 256 AITAEAKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMK 315 Query: 181 LMINFDV 187 +M+N V Sbjct: 316 IMVNIKV 322 >gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 622 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 104/186 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615 Query: 181 LMINFD 186 +++ Sbjct: 616 KVVSVK 621 >gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 331 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR F P AL++ R++RAG + + ++ + + P+ EF RV E Q+ Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M +P +V FF T + +Q Q GG+L E L +S ++R R +K +V Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179 AL+ E + S ++ ++P + ++ T+ Y+ L DP G +L AA ++G + + Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323 Query: 180 RLMINFDV 187 R +++ V Sbjct: 324 RKIVDIKV 331 >gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 316 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR F + P+A+ ++ RS+RAG ++ AV +I + +P+ F+ E Q Sbjct: 130 LNYHRKKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQK 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ +++S+ + + Q+ +FF TV + S+ GGNLSE L L+ LR R ++ +V+ Sbjct: 190 LGVRIADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVE 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ E + S +++ +LP + +Y PGY++V ++LG A ++G ++R Sbjct: 250 VITAEGRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIR 309 Query: 181 LMINFDV 187 ++N + Sbjct: 310 KIVNISI 316 >gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 367 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R F P+AL ++ ++++G A V+ + P+ EF +++ Sbjct: 181 LARRYQQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETR 240 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + L ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ Sbjct: 241 VNIPLEDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 300 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S WI+G+LP + L+ +P Y+ L+ P G LLG G++V+R Sbjct: 301 TLTAQGRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIR 360 Query: 181 LMINFDV 187 +I DV Sbjct: 361 ALIRVDV 367 >gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 322 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR + + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + S P + P Y + +++ + AAF+ + ++VMR Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 ILVNIKV 322 >gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 323 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR A + FP +LD + RS+RAG S ++ ++ + +DP+ EFR + Q+ Sbjct: 137 VRQKRSKRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L ++ +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R +K +V+ Sbjct: 197 LGAPLDTALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S + +A I+ LP + +PGY+ + +D G L+G A ++G ++ Sbjct: 257 AASAHGRLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIK 316 Query: 181 LMINFDV 187 +IN V Sbjct: 317 RIINIKV 323 >gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 282 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F M L ++P G L V +G + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 RITNIDV 282 >gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 332 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 101/191 (52%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R F + + + ++ ++R G + ++ ++ DP +EFRRV++ Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R +P ++ T +S+Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176 L+ + + S+WII LP ++ + +P YM L P+ + V + FM+ +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] Length = 322 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 97/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR A + P+A++++VRS+R G P + A++++ + +DP+ +EF + + G Sbjct: 140 ANKRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 200 IGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + P + P Y + + P + F++ + VMR ++N Sbjct: 260 EAKWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 652 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 96/172 (55%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +L ++ S+R+G + A+ I + DP+ EF R + +G +++++ RM Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 M + + I +Q ++GGNL+E L +R LR+R+++ +V+ALS E + SA+I+ + Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP + + + + GY+++L P G M+L ++ GI MR ++ +V Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652 >gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 282 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ L Sbjct: 97 KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++A Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + ++ LP + ++ F P M L P G L V L+G + Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 332 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R KF FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E Sbjct: 138 VSRLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 198 IGKTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172 A+S E+KASA+IIG LPF V L+ + + YM+ DP G ++ +M Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWM 317 Query: 173 LIGIMVMRLMINFDV 187 IG +M MINF++ Sbjct: 318 SIGAFIMAQMINFEI 332 >gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 310 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 71/183 (38%), Positives = 111/183 (60%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR A+F FP+A+D++VR +R+GLPV++ V+ + PV EF+ V+E +G + Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + E FF I +Q + GGNL+E LANLS +LR R MK K++A+S Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA+I+G+LPF V +V+ +P Y+ + R + +M IG +M M+N Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQRLIVAGIGGLIWMSIGAGIMAKMVN 307 Query: 185 FDV 187 F++ Sbjct: 308 FEI 310 >gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 322 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 97/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G Sbjct: 140 AKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 200 VAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 260 EAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 322 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P + V ++ + DP+ +EF + + Sbjct: 136 VNRKAGKRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDIGEALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P P Y + +++ P + + + VMR Sbjct: 256 AITAEAQWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 VLTNIKV 322 >gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] Length = 325 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR DFP+ LD+I R+++AG +DA+ + + P+ EF+ + + Sbjct: 139 LNRDTNKRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YTKDIKRALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L GH LL A M IG + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWIS 318 Query: 181 LMINFDV 187 +I DV Sbjct: 319 RIIKIDV 325 >gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 332 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI KR +F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E Sbjct: 138 VSRLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIK 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++ Sbjct: 198 IGKTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172 A+S E+KASA+IIG LPF V L+ + + YM+ DP G ++ +M Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWM 317 Query: 173 LIGIMVMRLMINFDV 187 IG +M MINF++ Sbjct: 318 GIGAFIMAQMINFEI 332 >gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 322 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 141/187 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I ++ +PVR+EFR ++E+Q Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SLSE+ +++ MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L YF+SP Y+++L G + + ++ +M++G++VM+ Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 322 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A F + P+A++++VRS+R G P S A+ ++ + DP+ SE + + G Sbjct: 140 AKKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ Sbjct: 200 IGDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + P ++ P Y + + V F++ VM+ + N Sbjct: 260 EAKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLGFLIANYFVMKALTN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 320 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 104/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K R F + + II S++AG A+AV+ ++SDP EF+++++ Sbjct: 134 IRKRKKDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMS 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ ++ + +++ VI +Q +GGNLSE L N+S +R+R+ +K++++ Sbjct: 194 LGISEEDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ +P + +Y + Y+ +L G +++ A +G++++R Sbjct: 254 TLTAQGRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIR 313 Query: 181 LMINFDV 187 +IN D+ Sbjct: 314 KIINIDM 320 >gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 279 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R AK ++ P+AL+++ S+R+G ++ A+ ++ ++ P E V+ Q LG Sbjct: 95 YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++ + + L++V+ + I++ +GGNLSE L L+ LR + M+ K++AL Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++G LP + +++ P M L + G ++ V A +++G + ++ + Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274 Query: 183 INFDV 187 + DV Sbjct: 275 VTIDV 279 >gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 310 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 96/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A+F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L S++ M ++ + + I + ++GGNL+E L ++ +R+R +K ++ Sbjct: 184 LGRDLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++P + ++ +PGYM+ + P G ++ + FM IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMR 303 Query: 181 LMINFD 186 +I+ Sbjct: 304 KIIDLK 309 >gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] Length = 332 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 112/193 (58%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI KR ++F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +S+Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFMLI 174 S E+KASA+IIG LPF V ++ + + YM DP G ++ +M I Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 322 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 97/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G Sbjct: 140 AKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 200 VAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 260 EAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 310 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 95/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ M ++ + S I + ++GGNL++ L +R+R +K ++ Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++PF + ++ SP YMN + + P G ++GV+ M IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303 Query: 181 LMINFD 186 +I+ Sbjct: 304 KIIDLK 309 >gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 310 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 93/184 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR A F + L ++ +RAG + A+ +S P E RRVI LG Sbjct: 126 FLAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLG 185 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ M ++ + S I + ++GGNL++ L ++ +R+R +K ++AL Sbjct: 186 RDLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKAL 245 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E K SA+I+ ++PF + ++ SP YMN + P G ++ + M +G + MR + Sbjct: 246 AAEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKI 305 Query: 183 INFD 186 I+ Sbjct: 306 IDLK 309 >gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54] gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54] Length = 317 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 100/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R F + FP+ALD++ +++AG + ++ ++ + P+ EF V+E + G S Sbjct: 135 RRQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKS 194 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + E+ +F T + VQ + GGNL E L +S I+R + + +V+ALS Sbjct: 195 IDSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSA 254 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E K SA I+ +LPFC++ V + Y+ +LI DP G L+ A M G ++ + Sbjct: 255 EGKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQ 314 Query: 185 FDV 187 D+ Sbjct: 315 LDM 317 >gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 324 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 100/176 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR +F P ALD++ R+++AG + ++ + P+ EF + ++ + Sbjct: 138 LQGKKRKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + + ++ FF +++Q + GGNL+E +A ++ ++R+R + K++ Sbjct: 198 YGMDVDRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 LS E + SA+I+ +LPF ++ ++Y + Y+++L G ++ AA M+IG Sbjct: 258 VLSAEGRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIGA 313 >gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 96/180 (53%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AK + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + E Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M + +Q++ F S +++Q Q GGNL+E LA L+ ++R R + KV+A++ EAK Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 S + + P + P Y + +++ P + + ++VMR++ + V Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322 >gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] Length = 291 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL +R F P+A+ +I +VRAG ++ A+ + + P EF ++ Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++L +++ + R M ++ F + + ++ GGNL+E L L+ +R + ++ K+ Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + W++ LP V ++ P M L++ +G ++ V A ++G++ +R Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284 Query: 181 LMINFDV 187 ++ D+ Sbjct: 285 RIMAIDI 291 >gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 336 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 107/184 (58%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K+R + P A+D++ ++ AG ++ A+ + + S+P+ E +V+ Q LGL Sbjct: 153 RRKRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E++ RM+ P +++ T I++Q ++GG+L+ L ++S +R+R +K +++ L+ Sbjct: 213 SQEEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLT 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + SA+I+ ++PF ++ +++ + Y+ L G ++L VA A +++G +MR +I Sbjct: 273 AQGRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRII 332 Query: 184 NFDV 187 V Sbjct: 333 AIKV 336 >gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 281 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +KH K+R KF +AL + + +AGL A+ + ++ P+ EF ++ Sbjct: 95 VKHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVK 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M R + ++ ++ QLGGN++E +S ++R+R ++ K+ Sbjct: 155 LGVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKID 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K WI+ ++P + ++ + P M +++ G +L+ + A ++GI+++R Sbjct: 215 ALTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIR 274 Query: 181 LMINFDV 187 ++N D+ Sbjct: 275 RIVNIDI 281 >gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 322 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P + AVA++ + DP+ SE + + Sbjct: 136 VNNKAKKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P ++ P Y + + V A F++ + VMR Sbjct: 256 AITAEAKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 MLVNIKV 322 >gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 326 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 82/181 (45%), Positives = 124/181 (68%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF +F NA+D+IVR +++GLPV D +I +S PV EF+ ++E +GL+L Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +M +P E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M K++ALS E Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA IIGSLP V TLV T+P YM ++ D RG ++L +A +M +GI++M+ MI+F Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324 Query: 186 D 186 Sbjct: 325 K 325 >gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4] Length = 283 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 100/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L K+R KF+ P+AL++I S+++G VS+A+ + + P++ EF+ + Q L Sbjct: 98 QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P +E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 321 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 106/178 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R KF + FP+AL +I RS+RAG + A+ ++ + +DPV F+ E Q Sbjct: 135 LHFKIRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQL 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL ++E+++ + + ++ FF+T I++ + +GGNLSE L NL++ +R+R ++ +V+ Sbjct: 195 LGLRITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + +++G+LP + +P Y +VL + +G +L A ++G+ V Sbjct: 255 VYTAQGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312 >gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 322 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P++++++VRS+R G P+ A+ ++ +S DP+ +EF + + Sbjct: 136 VNQKAKKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGREVGEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + + P + P Y + +++ V + + + VMR Sbjct: 256 AITAEAQWSGKFLSAFPLGALLFILVKDPNYYDGVMDHELFIPACFVVGVMLTMNLFVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 MLTNIKV 322 >gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 323 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF + P+ L+++V +RAG A+ + + P+ EFRRV++ LG+ + Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++R +P ++ T I+VQ ++GGNL+E L +S +R+R +K +++ L+ + Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180 S + +P V ++Y + YM N P G++ L AA ++ G +VM Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316 Query: 181 LMINFDV 187 + + +V Sbjct: 317 KIGDIEV 323 >gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 321 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R F + L ++ S+RAG + +I + P+ +EF V+ Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ M + + ++ S T + +Q Q+GGNL+ L + + +R ++ +V Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + K S ++ +P + TSP Y+ L+ G M +G A +IG +++ Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314 Query: 181 LMINFDV 187 +++ + Sbjct: 315 RIVDIKI 321 >gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 282 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 94/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ LG Sbjct: 98 RMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLG 157 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL Sbjct: 158 IDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRAL 217 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + ++ LP + ++ F P M L P G L V L+G + + Sbjct: 218 TSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKI 277 Query: 183 INFDV 187 N DV Sbjct: 278 TNIDV 282 >gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 322 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +S+Q Q GGNL++ LA L++++R R + +V Sbjct: 196 YGRDVGEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + ++++P + + ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVGFMLTLNLIVMR 315 Query: 181 LMINFDV 187 ++ N V Sbjct: 316 ILTNIKV 322 >gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 322 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + + P+A++++VRS+R G P S AVA++ + DP+ +E + + G Sbjct: 140 AKKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ES+ +M M +Q++ F + +++Q+ GGNL+E L LS+++R R + +V+A++ Sbjct: 200 MGESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + P ++ P Y + + V AAF+++ ++VMR ++N Sbjct: 260 EAKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVN 319 Query: 185 FDV 187 V Sbjct: 320 IQV 322 >gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 327 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IKKR D +A+ +I S++AG AV ++ + + P+ EF ++ + + Sbjct: 141 IKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ +V + ++ T + +Q Q+GGNLSE L N+S +R+R +K +V+ Sbjct: 201 FGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +LP + +++ + ++ VL DP G ++LG + +IGI + Sbjct: 261 TVTAQGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFIS 320 Query: 181 LMINFDV 187 +++ +V Sbjct: 321 RIVSIEV 327 >gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 320 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 98/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + + P+A++++VRS+R G P ++A+A++ + DP+ SEF + + G Sbjct: 138 AKKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRD 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V A++ Sbjct: 198 IGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITA 257 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P ++ P Y + ++ F+ ++VMR + + Sbjct: 258 EAKWSGKFLSAFPIVALIVIKLGDPHYYDEVMTHELFIPGCIAVILFLSANLLVMRKLTD 317 Query: 185 FDV 187 V Sbjct: 318 IKV 320 >gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 282 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + +KR D P+AL ++ ++RAG A+ +V +S P+ EF ++ Sbjct: 96 VKKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++ M + +P+ + + I++ ++GGNL+E L +++R LR++ M+ K++ Sbjct: 156 LGVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K ++ LP + ++ P M L + P G L V A L+G + Sbjct: 216 ALTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAIS 275 Query: 181 LMINFDV 187 + + DV Sbjct: 276 KITHIDV 282 >gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] Length = 325 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR FP+ALD++ R+++AG SDA+ + + P+ EF+ + + Sbjct: 139 LSRDTNKRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + +P F++ + VQ + GGNL+E + +LSR++R+R + +V+ Sbjct: 199 YTKDVKRALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L G LL A M IG + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KIIRIDM 325 >gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 103/184 (55%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++RT F++ + + ++ S+RAG + + ++ ++ P+ EFRRV+ LG+ Sbjct: 144 RARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGI 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E++S ++R +P +++ T I+VQ ++GGNL++ L + +R+R +K +++ L+ Sbjct: 204 PTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLT 263 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S +II +LP ++ L+ +PGY+ ++ P + + +G + MR ++ Sbjct: 264 AQQSISGYIISALPVGLALLLMVINPGYVMGMMRWPW-ICMPIGGVVLIFLGFIAMRKIV 322 Query: 184 NFDV 187 N +V Sbjct: 323 NIEV 326 >gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] Length = 316 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL R K P+AL I+ RS+ AG PV+ AV+++ + DP+ +EF + Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL+ ++ RM +V F+ + +Q + GGNL+E L + + +R+R+ M+ KV+ Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SA I+ S PF V T ++ P + +I++P +M IG +VM Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309 Query: 181 LMINFDV 187 MINF + Sbjct: 310 RMINFKM 316 >gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] Length = 305 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 113/184 (61%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+ +R +FL F A+ +IVR +RAGLPV++ V V+ + PV EFRRV + LG Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ R + L E F + ++VQ + GGNL+E+L NL ILR R+ M+ K++A+S Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG LPF ++ L+ SP YM VL P G +++ A + +G ++MR M+ Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301 Query: 184 NFDV 187 F++ Sbjct: 302 RFEI 305 >gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 296 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L+ +R + +AL ++ +RAGL V A+ ++V + PV EF +++ Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E + + +P ++ F + I++ + GGNL+E + ++R+R +K K+ Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + I +P+ + + + + P + + P G +L A AF G V+ Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVIL 289 Query: 181 LMINFDV 187 ++ V Sbjct: 290 KIVKIKV 296 >gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 322 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 100/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKRTA+ + P+A++++VRS+R G P S A++++ + SDP+ +EF + + G Sbjct: 140 AKKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGRE 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E++ M + +Q++ F + +++Q Q GGNL+E L LS+++R R + +V+A++ Sbjct: 200 LGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + P + P Y + + F+++ ++VMR ++N Sbjct: 260 EAKWSGNFLSGFPLMALIGIQLIDPNYYDEAMEHAFFIPAAITVGVFLVLNLIVMRGLVN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 290 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 106/186 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R KF + P+AL ++ +RAGL +S A+A +V +S P+ EF ++ Q L Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G++L +++S + MP Q ++ + + ++ GG L+E L S +R R M+AK+ A Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K AW++G+LP + ++ P M++L + G L V A F +G+ V+R Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284 Query: 182 MINFDV 187 +I DV Sbjct: 285 IIAIDV 290 >gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 320 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R+ KF + FP+AL I RS+RAG A+ ++ + PV F+ E Q Sbjct: 134 LRVKTERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQ 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL + +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + S +++ +LP + +P Y LI +P G +L AAA +IG +V+R Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIR 313 Query: 181 LMINFDV 187 ++ + Sbjct: 314 KIVRIRI 320 >gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis MSMB43] Length = 328 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 114/185 (61%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+A+D++VR+VRAG+PV A+ +S +PVRS F + + + Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + + + + SFF+ + +Q + GG+L+E L NLS I+R R++++ K +A Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E K SA II ++PF + +Y + Y+ +L + GH +L +AA + +G++++R Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320 Query: 182 MINFD 186 + N D Sbjct: 321 IANLD 325 >gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 282 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LARMRKKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDMDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIK 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L +P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 327 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 103/189 (54%), Gaps = 4/189 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LG Sbjct: 139 YAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L Sbjct: 199 LRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVL 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVA-AAFMLIGIMV 178 + + + SA++I LP ++ + +P YM+ + + P L VA ++IG Sbjct: 259 TAQGRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFA 318 Query: 179 MRLMINFDV 187 + +++ +V Sbjct: 319 IMKIVDIEV 327 >gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 103/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +R KF + P+A+D+ R++RAG + + I ++SDPV+ EF++++E LG Sbjct: 141 RVRGRRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + + +PL ++ FF T + +Q Q G N+ L NLS ++R+R NM AK++A Sbjct: 201 SQVEPALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAH 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + SA ++ LP V + P Y+ +L DP G A +GI+V+R + Sbjct: 261 TAQQRFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKI 320 Query: 183 INFDV 187 N V Sbjct: 321 ANIKV 325 >gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] Length = 323 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 102/185 (55%), Gaps = 1/185 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R +F++ + + ++ S+RAG + + ++ +S+ P+ EFRRV+ LG Sbjct: 140 WRGRHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ ++ +P +++ T I++ ++GGNL++ L + +R+R +K +++ L Sbjct: 200 VPLQDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVL 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + S +II LP ++ L++ +P Y+ L+ P + A M++G +VMR + Sbjct: 260 TAQQSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPW-ICMPIGAVICMVLGFVVMRRI 318 Query: 183 INFDV 187 + +V Sbjct: 319 VAIEV 323 >gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 325 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 99/191 (51%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR F D + + ++ ++R G + ++ + P+ EFRRV++ Sbjct: 135 LNMRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVG 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ ++R MP +++ T +++Q ++GGNL++ L + +R+R +K ++Q Sbjct: 195 LGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQ 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGV-AAAFMLIGI 176 L+ + + S W+I LP ++ + +P YM + + P+ L V + A + IG Sbjct: 255 TLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSFGMPPKHWCCLPVTSLAMIAIGY 314 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 315 FAIMKIMDIEV 325 >gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 327 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 102/189 (53%), Gaps = 4/189 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LG Sbjct: 139 YAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L Sbjct: 199 LRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVL 258 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVA-AAFMLIGIMV 178 + + + SA++I LP ++ + +P YM + + P L VA ++IG Sbjct: 259 TAQGRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFA 318 Query: 179 MRLMINFDV 187 + +++ +V Sbjct: 319 IMKIVDIEV 327 >gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21] gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21] Length = 320 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RT +F + FP+AL I RS+RAG A+ ++ ++ PV FR E Q Sbjct: 134 LRVKTERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQ 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL + +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + S +++ +LP + P Y LIN+P G +L AAA ++G +V+R Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIR 313 Query: 181 LMINFDV 187 ++ + Sbjct: 314 KIVRIRI 320 >gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] Length = 320 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 96/183 (52%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G Sbjct: 138 ANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRD 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ Sbjct: 198 VGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITA 257 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P ++ P Y + + + + F+ + + VMR++ + Sbjct: 258 EAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGVFLALNLFVMRILTD 317 Query: 185 FDV 187 V Sbjct: 318 IKV 320 >gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 283 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L K+R KF+ P+AL++I S+++G VS A+ + + P++ EF+ Q L Sbjct: 98 KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 322 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ +E + + Sbjct: 136 VNSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+ Sbjct: 196 YGRDMGESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y + ++ V AF+++ + VMR Sbjct: 256 AITAEAKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMR 315 Query: 181 LMINFDV 187 + N V Sbjct: 316 HLTNIKV 322 >gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 92/180 (51%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A F D ++L ++ S+RAG + AV + +++ P EF R++ +G L Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + M + + + I + ++GGNL+E L + +R+R ++ +V+ALS E Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA ++ +LPF + + T+P Y+ G++++ + +G + ++ + Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVGGLWLKKTVAIR 309 >gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] Length = 325 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR FP+ LD+I R+++AG +DA+ + + P+ EF+ + + Sbjct: 139 LNRDTNKRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YTKDIKLALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +P Y+ L G LL M+IG + Sbjct: 259 TLSAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWIS 318 Query: 181 LMINFDV 187 +I DV Sbjct: 319 RIIKIDV 325 >gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 36 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 95 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 96 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 155 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 156 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 215 Query: 182 MINFD 186 + N D Sbjct: 216 IANLD 220 >gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 322 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A + P+A++++VRS+R G P + A+A++ + +DP+ +EF + + G Sbjct: 140 AKKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ES+ M Q++ F S +++Q Q GGNL+E L L++++R R + +V+A++ Sbjct: 200 VTESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P ++ P Y + + V F+ I ++ M++M+N Sbjct: 260 EAKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVN 319 Query: 185 FDV 187 V Sbjct: 320 IKV 322 >gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 333 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + +A ++ +LP ++ +P + + D + LIG +R Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDSMFIIGFVGLIVLYLIGFFTIR 326 Query: 181 LMINFDV 187 M++ V Sbjct: 327 RMVDLKV 333 >gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399] Length = 331 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 95/162 (58%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+AL+++ R++R+G ++ + V+V + DP+ EF E Q+LG+ + +++ + Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P + FF+T +++Q Q GG+L+E L + I+R+R + +VQAL+ E + S ++ Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +LP + ++Y+ +P YM +L + G ++ A ++G Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILGA 312 >gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC 10229] gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247] Length = 331 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243] gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei 1710b] gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 331 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 331 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 320 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 96/183 (52%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G Sbjct: 138 ANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRD 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ Sbjct: 198 VGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITA 257 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + P ++ P Y + + + + F+ + + VMR++ + Sbjct: 258 EAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMRVLTD 317 Query: 185 FDV 187 V Sbjct: 318 IKV 320 >gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 320 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 1/181 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +P+ EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL RG M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 D 186 D Sbjct: 319 D 319 >gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 332 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 100/191 (52%), Gaps = 4/191 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R F + + + ++ ++R G + ++ ++ P +EFRRV++ Sbjct: 142 VNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R MP ++ T +++Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176 L+ + + S+WII LP ++ + +P YM L P+ + VA+ FM+ +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 331 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323 Query: 182 MINFD 186 + N D Sbjct: 324 IANLD 328 >gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 322 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + P + P Y N + + V F+++ ++VMR Sbjct: 256 AITAEAKWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMR 315 Query: 181 LMINFDV 187 ++N V Sbjct: 316 ALVNIKV 322 >gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] Length = 330 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 122/187 (65%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E Sbjct: 144 LGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L E++ R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQ Sbjct: 204 IGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQ 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + EA+ASA IIGSLP V ++ +P Y+ +L G++LL + +G++VMR Sbjct: 264 AYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMR 323 Query: 181 LMINFDV 187 MINFD+ Sbjct: 324 NMINFDI 330 >gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 294 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 93/182 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR A F P AL II +R+G A+A + +P+ E +RVI + G Sbjct: 112 KKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRK 171 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ES+ + E+ ++ +++Q + GGNL+E + ++ + DR N++ +++ L+ Sbjct: 172 LEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTT 231 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + S +IG LP + ++ + SP YMN G ++L V+ G ++++ ++N Sbjct: 232 QGRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291 Query: 185 FD 186 Sbjct: 292 IK 293 >gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 327 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 120/186 (64%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K R KF F +A+DI+VR ++ GLPV D +I +S +P+ EFR ++E Sbjct: 141 IGMKAKARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMG 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL+L++++ +M MP E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M K++ Sbjct: 201 VGLTLAQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA II SLP V LV ++P YM ++ D RG ++L AA +M G+ VM+ Sbjct: 261 ALSSEAIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMK 320 Query: 181 LMINFD 186 MI+F Sbjct: 321 RMISFK 326 >gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5] gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 293 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 100/182 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R + ++ P LD VRS+++G ++DAV + S+DP++S R+ LG Sbjct: 110 WLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLG 169 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++S + E+ F+ + V + GGN SE L NL +++R+R+ ++ A+ Sbjct: 170 VNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAM 229 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +AW++G+LP + T+PGYM + +D G +L A + G + + M Sbjct: 230 TGETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRM 289 Query: 183 IN 184 + Sbjct: 290 LR 291 >gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 216 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 29 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 88 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 89 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 148 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 149 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 208 Query: 182 MINFD 186 + N D Sbjct: 209 IANLD 213 >gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 217 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 126/185 (68%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K R KF +FPNA+D+IVR +++GLPV + +I +S P+ F++++E +G Sbjct: 142 FLAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVG 201 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L +++ +M MP E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+AL Sbjct: 202 MTLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKAL 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EA ASA II SLP V T+V FTSPGYM L D RG+ LL +A A M GI VM+ M Sbjct: 262 SSEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRM 321 Query: 183 INFDV 187 I+F + Sbjct: 322 ISFKI 326 >gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] Length = 320 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + P+A+D++VRS+R G P S A+ + + DP+ +E + + Sbjct: 134 ISRKATQRINLISEQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETA 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q GGNL+E L LS+++R R + +V+ Sbjct: 194 YGRDMGETLKAMAERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S ++ + P + P Y + ++ P V AAF+++ ++VMR Sbjct: 254 AITAEAKWSGNLLSAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMR 313 Query: 181 LMINFDV 187 + N V Sbjct: 314 ALTNIKV 320 >gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 323 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR KF +AL I+ S+R+G A+ ++ + P+ EF ++ + Sbjct: 137 LRLAKTKRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMN 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G E++ MV + +++ T + +Q Q+GGNL+E L ++ +R+R +K +++ Sbjct: 197 WGTPTEEALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP +S ++ + YM VL G ++ A F ++G+ +++ Sbjct: 257 TLTAQGRISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIK 316 Query: 181 LMINFDV 187 +I V Sbjct: 317 KIIKIPV 323 >gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 300 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 99/183 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+KKR F + FP+AL+I++ ++ AG + A++ + +DP+ EF+ + + L Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R + P E FF+ + GG L LA L R+L D + + K A Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N +++DP G ++L +G++++ L Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 212 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 25 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 84 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 85 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 144 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 145 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 204 Query: 182 MINFD 186 + N D Sbjct: 205 IANLD 209 >gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] Length = 319 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 90/177 (50%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 KF + + L ++ ++RAG A +I + P+ E + V+ +LG +L ++ Sbjct: 142 KKFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESAL 201 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + + T + +Q Q+GG+L+ L +S + +R M+ +V L+ + + S Sbjct: 202 DNMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLS 261 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++ LPF ++ ++ F P Y+ L+ D G +++G+A LIGI ++ + + Sbjct: 262 GIVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIKKITDIR 318 >gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 313 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 113/186 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL ++R A+F P+AL ++ ++RAG + A+ V+ + P+ EF R + Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ R+ +P ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + SA IIG LP ++ ++ +P Y+ LI +P G ++LG+ AA ++G++++R Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306 Query: 181 LMINFD 186 + + Sbjct: 307 KITEVE 312 >gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 329 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R F + + + ++ S+R+G + ++ ++ ++ P+ EFRRV++ LGLSL + Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++R +P ++ + I++Q+++GGNL+E L ++ +R+R +K +++ L+ +A+ Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183 S +++ LP ++ ++ +P YM L+ P + V +A M+I G ++ ++ Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325 Query: 184 NFDV 187 N ++ Sbjct: 326 NIEI 329 >gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 311 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R KF +AL I+ S+RAG A+A I DP+ EF +V Sbjct: 125 IKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVE 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +S++ + M +E+ +T +S+Q Q+GGNL++ L N+ +R+R ++ ++ Sbjct: 185 LGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + SA +I LP V L+ + YM + P G+ LLGV+A ++G +++ Sbjct: 245 ALTAQGDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIK 304 Query: 181 LMINFDV 187 + N ++ Sbjct: 305 KITNIEM 311 >gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 323 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ ++R F D P LD+I S+R G + ++A + G +P+R+E RRV + Sbjct: 137 MRIRRQRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+++++ +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ Sbjct: 197 LGLSITQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVR 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + S+++IG+LPF ++ +++ +P YM L + A + G +++R Sbjct: 257 VITSMQRISSYVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFVSSVAGFLIIR 316 Query: 181 LMINFDV 187 +++ + Sbjct: 317 KIVDVRI 323 >gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264] gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264] gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264] Length = 330 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322 Query: 182 MINFD 186 + N D Sbjct: 323 IANLD 327 >gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 321 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 1/179 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR + F + P+AL +I RS+RAG ++ AV ++ ++ +P+ FR E Q Sbjct: 134 VSNVRKKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQK 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL +++++ M++ M ++ FF TVI++ ++ GGNLSE L L+ +R+R ++ +VQ Sbjct: 194 LGLRITDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQ 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV-YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + S +I+ +LP + Y PGY +V + + +GH + A +IG + Sbjct: 254 VYTAQGRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFLF 312 >gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 320 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 1/181 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +PV EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL +G M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 D 186 D Sbjct: 319 D 319 >gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 321 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 99/172 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ SEF + + G L +++ + Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+Q+ GGNL E L L+ +R+R ++ KV+A++ E + SA+I+ Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++P + + PG+ + + +P+ LLG + ++++G ++M M NF Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNFK 320 >gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614] Length = 326 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R F P L ++ S+ AGL ++ + + + +DPV +EFRR + Sbjct: 140 LGVRRGRRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETR 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++ + ++++ I +Q Q+GGNL+E L ++ +R+R+ ++ +V Sbjct: 200 LGVPLEDALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVA 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAW++GSLP T + + Y+ L DPRG +LL AA ++ +G M Sbjct: 260 ALSAEGRLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMS 319 Query: 181 LMINFDV 187 ++ +V Sbjct: 320 RLVRVEV 326 >gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 328 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + F A+DI R++RAG PV+ A++++ + +DP+ +EF V + Sbjct: 142 LNRSAEKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIA 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L++S+ + L+++ F+ +SVQS+ GGNL+E L NL+ ++RDR ++ KV+ Sbjct: 202 YGANLNDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVR 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E +ASAW++ LP +++ +P + + DP LIG++ +R Sbjct: 262 ALSSEGRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLR 321 Query: 181 LMINFDV 187 M++ V Sbjct: 322 SMVDLKV 328 >gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 319 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 99/185 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +R A P AL+IIVRS+ AG PV A+A++ + SDPV +EF + Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L ++I RM +V F+ + +Q + GGNL+ L + +R+R M+ K++A Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 S E +ASA I+ + PF ++ SP + +I++P L ++ IG +VMR Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGLTVWVGIGNLVMRR 313 Query: 182 MINFD 186 MI+ Sbjct: 314 MIDMK 318 >gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] Length = 323 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + P+A++++VRS++ G P S A+A + +S DP+ +EF + + G Sbjct: 141 AKKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGE 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++S+ M + +Q++ F + V+ +Q++ GGNL+E L L+ ++R R + KV A++ Sbjct: 201 ITDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITA 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S + + + P + T P + + ++ + V A ++I I+ MR+M N Sbjct: 261 EAKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTN 320 Query: 185 FDV 187 V Sbjct: 321 IKV 323 >gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 307 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV + V EF+R+ E LG Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 IN 184 + Sbjct: 302 MR 303 >gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 323 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR KF + P ALDI+ R+++AG P + + V + DP+ EFR + G++ Sbjct: 141 RDKRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMN 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + +++ +P + T + VQ GGNL+E L ++ ++R R + KV+ + Sbjct: 201 IKTAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTA 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + SAWI+ +PF +S ++ +P Y+ +L+ +P G L+ +A +++G+ MR +I Sbjct: 261 EGRLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIR 320 Query: 185 FDV 187 DV Sbjct: 321 IDV 323 >gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160] gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160] Length = 325 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 117/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + A+FL FP+ LD+I+R+VRAG+PV A++ ++ +PVRS FR + ++ L Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + V + + + SFF+ + +Q + GGNL E L NLS I+R R++++ K +A Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF + +Y + Y+++L + GH +L +AA ++IG+ +++ Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 300 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 95/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R +F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L +A L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P + ++ DP G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645] gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645] Length = 310 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 92/186 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R F D FP+AL++I R+VRAG A+ ++ S DP+ EFRR + Sbjct: 124 LIWIKNRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLD 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS +++ M + L +V F+T ISV + GG L E L L+ ++RDR +++ Sbjct: 184 VGLSAPKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLR 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +++ + SA II L + P Y + P G LL A +G+ + Sbjct: 244 SITSSGRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLLLFALVSEALGLYFVY 303 Query: 181 LMINFD 186 ++ D Sbjct: 304 RLVRAD 309 >gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 205 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 18 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 78 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197 Query: 182 MINFD 186 + N D Sbjct: 198 IANLD 202 >gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 202 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 15 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 74 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 75 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 134 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 135 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 194 Query: 182 MINFD 186 + N D Sbjct: 195 IANLD 199 >gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 204 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 17 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 76 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 77 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 136 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 137 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 196 Query: 182 MINFD 186 + N D Sbjct: 197 IANLD 201 >gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 200 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 13 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 73 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 133 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 192 Query: 182 MINFD 186 + N D Sbjct: 193 IANLD 197 >gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 307 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV + V EF+R+ E LG Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 IN 184 + Sbjct: 302 MR 303 >gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 235 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 118/183 (64%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +G Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +AL+ Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + + II ++PF + ++ + Y+ +L GH +L +AAA ++IG++V+R + Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIRKIS 229 Query: 184 NFD 186 + Sbjct: 230 RLE 232 >gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 205 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 18 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 78 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197 Query: 182 MINFD 186 + N D Sbjct: 198 IANLD 202 >gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 317 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 114/187 (60%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + A F D P ALDI R +RAG PV+D++A++V + P+ EF R + Sbjct: 131 LSIAQSRYKATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVR 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L E++ R+ +PL EV+FF+ ++Q++ GGNL E + NL+ LR+R+ ++ K + Sbjct: 191 MGNTLPETLERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKAR 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA+ASA I+ +LPF V+ L+ + Y+ L +DPRG + AA+ + +GI VM Sbjct: 251 ALSSEARASAVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMV 310 Query: 181 LMINFDV 187 M +V Sbjct: 311 RMGKLNV 317 >gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] Length = 314 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 92/173 (53%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++L ++ S+RAG + A+A + ++ P EF R+I +G L+ ++ Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M Q+ + + I++ ++GGNL+E L + +R+R ++ +VQAL+ E K SA+++ Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LPF + ++ ++P Y+ VL P G ++ + IG + + ++ Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIGGIWLSKVVRIR 313 >gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 301 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 100/175 (57%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL++I R ++AG PV A+A++ + DP+ +EF + + G L +++ Sbjct: 126 FGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNS 185 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E + SA+ Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAY 245 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 I+ ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 246 ILTAIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNFR 300 >gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 314 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KR +F L ++ S+RAG A+ + P++ E R++ Sbjct: 128 VKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILNENR 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + S++ M ++ + + + + + GGNL+E + +++++RDR ++ KV Sbjct: 188 LGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIREKVH 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + S++I+ SLP ++ F +PGY++ L + G L+G + I + MR Sbjct: 248 AYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFLWMR 307 Query: 181 LMINFDV 187 ++++ V Sbjct: 308 IIVDIKV 314 >gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 333 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 98/176 (55%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP ALDI VR +R+G P+ A+ ++ + DP+ +EF V + GL L E+++R Sbjct: 158 MEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALAR 217 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M L ++ F +SVQ + GGNL+E L NLS+++RDR +M KV+ALS E + +A Sbjct: 218 MAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAV 277 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+ +LP ++ T+P + + DP + G L+G +R MI+ V Sbjct: 278 ILTALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333 >gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] Length = 321 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 98/183 (53%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + P A++++VRS+R G P S A+A++ + DP+ +E + + G Sbjct: 139 AKKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ M + Q++ F + +++Q GGNL+E L L++++R R + +V A++ Sbjct: 199 MGETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAK S ++ + P + P Y + ++ P + + AF+++ ++VMR +++ Sbjct: 259 EAKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVD 318 Query: 185 FDV 187 V Sbjct: 319 IKV 321 >gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 302 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +L++KR F + FP+AL+I++ +V +G + A+A + + + EFR + E L Sbjct: 117 NYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDNQIGLEFRDMGERLKL 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + P FF I GG L +A L R+L D + + K A Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ SLPF L+ + SP ++ ++ DP G +L +G+ ++ L Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296 Query: 182 MIN 184 +I Sbjct: 297 LIR 299 >gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 321 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 111/187 (59%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R A F D FP+ L+ + RS+RAG S A+ + + SDP+ E RR E Q+ Sbjct: 135 VRRKARMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L + ++ + +P +V FF + + +Q + GGNL+E L L++++R+R ++A+++ Sbjct: 195 LGQPLEIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S + S I+ ++P V+ +++ +P Y I+DP GH L+ L+G +++R Sbjct: 255 AVSAQGLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIR 314 Query: 181 LMINFDV 187 ++ FDV Sbjct: 315 KIVTFDV 321 >gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25] gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 294 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 96/182 (52%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R + ++ P LD VRS+++G ++DAV V +P+R RV +G Sbjct: 111 WRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +S+S + E F+ + V + GGN SE L NL +++R+R+ +++A+ Sbjct: 171 VSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A+++G LP + +PGY+ + +D G ++L A A L G +M M Sbjct: 231 TGETRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRM 290 Query: 183 IN 184 + Sbjct: 291 LR 292 >gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH] Length = 219 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 92 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211 Query: 182 MINFD 186 + N D Sbjct: 212 IANLD 216 >gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 305 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 85/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ +F + FP AL+++ +V +G + A+ + V EF+ + + LG Sbjct: 121 WLQRREKKQFEEAFPEALNMLTSAVSSGESIMHAIIFVGTALDGEVGKEFKLMGDRLRLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ D + ++ K AL Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+G++PF L+ + SP ++ P G +L IGI ++ + Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISIIWAL 300 Query: 183 IN 184 + Sbjct: 301 MK 302 >gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 300 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 99/183 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + ++P+ EF+ + + L Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P + ++ + +P ++ ++NDP+G +L LIG+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 284 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R + D P+ L ++ ++R G + + + S P+ E V+ Q Sbjct: 98 LLYLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQR 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E++S + + Q+ + + + ++GGNL++ L L +R R M+ K++ Sbjct: 158 LGVPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIR 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K ++ +LP + + P L + RG +L +A ++G +R Sbjct: 218 ALTSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIR 277 Query: 181 LMINFDV 187 +++ +V Sbjct: 278 KIVSIEV 284 >gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4] Length = 217 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 309 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 97/186 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I K+ +F +AL I+ +RAG ++ A+ + DP+ SEFR Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +S++ M +++ + + +Q Q+GGNL+E L N+S+ +RDR +K V+ Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G +P + ++ SP Y ++ GH+++ ++ +G + + Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302 Query: 181 LMINFD 186 +++ Sbjct: 303 KIVDIK 308 >gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 294 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF +AL +I S++AG ++ A+ + Q+ P+ EFR +I+ Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +++ M R + ++ +T I Q GG L+ L ++ ++R+R + KV+ Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + A +I P + +++ +P + + +P G LL VA F +IG +++R Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287 Query: 181 LMINFDV 187 ++ +V Sbjct: 288 RIVTIEV 294 >gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira crunogena XCL-2] Length = 315 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 94/184 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K+R + FP LD IVR++++G + A+++I + P+ E + V LG Sbjct: 131 FKKKQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLG 190 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+ + + + + E FF + +Q + GG L+ L LSR++R R+ +AK++ L Sbjct: 191 ISMRDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTL 250 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E++ +A +G P YF P M +NDP G +L ++ M+ G ++++ M Sbjct: 251 TAESRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSM 310 Query: 183 INFD 186 + Sbjct: 311 LRIK 314 >gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 283 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L ++R +F+ P+AL++I S++AG V++A+ + + P++ EF+ + Q L Sbjct: 98 RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ + + +P E + + +GGNL+E L LS LR + M+ K+ + Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + +Y P M ++ +P G ++ V++ + G M ++ Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277 Query: 182 MINFDV 187 +I DV Sbjct: 278 IITIDV 283 >gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 315 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 94/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + + Sbjct: 129 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLN 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ Sbjct: 189 LGRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVR 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L LV ++ G + + P G L+ ++ A +G +V+R Sbjct: 249 TMLSEVNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIR 308 Query: 181 LMINFDV 187 + +V Sbjct: 309 RLGRIEV 315 >gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20] gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 295 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%) Query: 4 LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + P +E FF ++I GG + E ++ L R + D M+ K +A+ Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ + Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290 Query: 183 IN 184 + Sbjct: 291 MR 292 >gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 200 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 63/185 (34%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 13 RILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 73 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+++L GH +L +AA + IG+ ++R Sbjct: 133 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRK 192 Query: 182 MINFD 186 + N D Sbjct: 193 IANLD 197 >gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 333 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + +A ++ +LP ++ +P + + + + +IG + +R Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQEKMFIVGFVGLITLYIIGFVTIR 326 Query: 181 LMINFDV 187 M++ V Sbjct: 327 RMVDLKV 333 >gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 295 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 80/180 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + P +E FF ++I GG + E ++ L R + D M+ K +A++ Sbjct: 173 VMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTS 232 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 233 EARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292 >gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 295 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%) Query: 4 LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + P +E FF ++I GG + E ++ L R + D M+ K +A+ Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ + Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290 Query: 183 IN 184 + Sbjct: 291 MR 292 >gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 295 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%) Query: 4 LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + P +E FF ++I GG + E ++ L R + D M+ K +A+ Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ + Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290 Query: 183 IN 184 + Sbjct: 291 MR 292 >gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 309 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 103/183 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++R +F P LD++ +RAG ++ Q P+ ++V+ L Sbjct: 124 RVRKQRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISL 183 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L + ++R V + ++ T I +Q ++GGNL++ L N++R++RDR+++ A+++A Sbjct: 184 GLDLEDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKA 243 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + I+ LP ++ ++ SPGY++ L + +G ++LG A F IGI+V++ Sbjct: 244 LTSQGRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQR 303 Query: 182 MIN 184 ++ Sbjct: 304 IVR 306 >gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383] gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383] Length = 325 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 119/185 (64%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++++ +++PVR+ FR + ++ + Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + G+ +L +AA + +G++V+R Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 300 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 94/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ D G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens Pf0-1] Length = 293 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 98/182 (53%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R + ++ P LD VRS+++G ++DAV + S DP++ RV LG Sbjct: 110 WRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLG 169 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL E++ + E+ F+ + V + GGN SE L NL R++R+R +++A+ Sbjct: 170 VSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAM 229 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +AW++G LP ++ ++P Y+ + ND G M+L A +IG +++ M Sbjct: 230 TGETRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRM 289 Query: 183 IN 184 + Sbjct: 290 LR 291 >gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 322 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 96/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR D P+A++++VRS+R G P++ A+ + + DP+ +EF + + G ++ Sbjct: 142 KRLKLAEDQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVV 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + +Q++ F + +S+Q GGNL+E L L++++R R + +V+A++ E Sbjct: 202 DSLRDLAERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEP 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K S + + P V ++ +P Y + + + P + A + ++ M++M Sbjct: 262 KWSGVFLSAFPVAVLVVIQVVAPTYYDNVKDSPSFVPAALIVFALLGANVLFMKIMTTIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 325 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 96/183 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + + P+A+D I RS RAG+PV++ + S P+ +EFR + L Sbjct: 140 RSTLQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKL 199 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR R+ + KVQ+ Sbjct: 200 GVPLRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQS 259 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L NDP G +L A + +G+++ L Sbjct: 260 KTSEARASAKIVAALFPGCLGYMYLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHL 319 Query: 182 MIN 184 M+ Sbjct: 320 MVK 322 >gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 316 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 95/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A+F + L ++ S+RAG + AV + ++ P + EF R++ Sbjct: 130 LSVMTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ + ++ + + I + ++GG+L+E L +++ +R+R +K +V+ Sbjct: 190 LGRDLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP + + + Y+ L P G ++L VA + +G + Sbjct: 250 ALSAEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIMLVVAVVLLALGSFWLS 309 Query: 181 LMINFD 186 ++ Sbjct: 310 RVVKIK 315 >gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415] Length = 295 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Query: 4 LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R K F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 111 LGQRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 P +E FF ++I GG + E ++ L R + D M+ K +A+ Sbjct: 171 EDAMAVFHDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ + Sbjct: 231 TSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIWWL 290 Query: 183 IN 184 + Sbjct: 291 MR 292 >gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 331 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 120/181 (66%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +ASA IIGSLP V ++ +P Y+ VL G++LL + G+MVMR MINFD Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330 Query: 187 V 187 + Sbjct: 331 I 331 >gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 295 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio splendidus LGP32] gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio splendidus LGP32] Length = 306 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ + Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301 Query: 183 IN 184 + Sbjct: 302 MK 303 >gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 301 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 97/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +R +F FP+AL++++ +V AG + AV+ + + V EF+ + + L Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVSFVGQNLDNEVGREFKNMGDRLKL 174 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + + R + P E FF+ I GG L LA L R+L D + M+ K A Sbjct: 175 GESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMA 234 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA ++ ++P + ++Y +P +N +++DP+G +L L+G+ ++ L Sbjct: 235 MTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVWL 294 Query: 182 MIN 184 ++ Sbjct: 295 LVK 297 >gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] Length = 306 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ + Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301 Query: 183 IN 184 + Sbjct: 302 MK 303 >gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] Length = 306 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L +++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L IGI ++ Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPILYYMLISEAIGIGIIW 299 Query: 181 LMIN 184 ++ Sbjct: 300 SLMK 303 >gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035] gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035] Length = 322 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EAK S + + P + P Y + + P + V F+++ ++VMR Sbjct: 256 AITAEAKWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHPFFIPAVLVVGVFLVLNLIVMR 315 Query: 181 LMINFDV 187 +++ V Sbjct: 316 ALVSIKV 322 >gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 335 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F D P LD+I S+R G + ++A + +P R+E RRV + LGLS+++++ Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ + S+ Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++IG+LPF ++ +++ +P YM L + A ++G +++R +++ + Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFISSVVGFLIIRKIVDVRI 335 >gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 309 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 92/183 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R AKF + + +++ +R G V +V ++ P E R++ +G Sbjct: 126 LRDRRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGK 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + M ++ + S I + ++GG+L+E L ++ +R+R +K ++++LS Sbjct: 186 DSRLAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLS 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA+++ ++P V+ ++ F + GY+NV + P G ++L +A +G M ++ Sbjct: 246 AEGKMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVGGFWMSRVV 305 Query: 184 NFD 186 Sbjct: 306 KIK 308 >gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 302 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIKKR +F FP+AL+I++ +V AG V +++ + + V F+ + E LG Sbjct: 118 WLIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + R ++ P FF I GG L +A L R+L D + + K A+ Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAM 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ SLPF ++ F SP +N ++ DP G +L +G+ ++ L+ Sbjct: 238 TSEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLL 297 Query: 183 IN 184 I Sbjct: 298 IR 299 >gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 282 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 95/185 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R + + P+AL ++ S+RAG+ S A+ V+V P+ E V+ QH+G Sbjct: 98 MLRRRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMG 157 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++ + +P+ + F + +++ ++GGNL+E LA L+ LR R M+ KV+AL Sbjct: 158 VRADEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKAL 217 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++ LP + + M + + G +++GV +G + + + Sbjct: 218 TAQGKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKI 277 Query: 183 INFDV 187 + DV Sbjct: 278 MTIDV 282 >gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 1/183 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + + P+AL I ++RAG +S AV V+V P+ EF V++ Q LG+S Sbjct: 104 RKKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVS 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ ++QAL+ Sbjct: 164 FDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTA 223 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + ++ P + ++Y P M +L + G +L V + +G ++R ++ Sbjct: 224 QGRIQGLVMTLFPLLLMGVLYLMQPT-MGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVA 282 Query: 185 FDV 187 D+ Sbjct: 283 IDI 285 >gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp. damselae] gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae] Length = 306 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 87/184 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+ KF + FP+AL+I+ ++ +G + A+ + V +EF + E Sbjct: 120 ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKTLDGAVGNEFSLMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P FF + GG L + ++ L+RI+ D + ++ K Sbjct: 180 LGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP ++ +P G +L IGI ++ Sbjct: 240 ALTSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVW 299 Query: 181 LMIN 184 L++ Sbjct: 300 LLMK 303 >gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans] gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 325 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 139 LNRDTSKRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KLIRIDM 325 >gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans] gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 321 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R+ + + P ALD++ RS+RAG + A V+ + +PV EF R E+Q LGL Sbjct: 138 RDRRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLP 197 Query: 65 LSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++I +M P +++ F+ +Q + GGNL+E L +++ +R R +K+ AL+ Sbjct: 198 VEQAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALT 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E +AS I+G LP ++ ++ +P YM L++DP GHM++ AA L+G+ + + Sbjct: 258 AEGRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLT 317 Query: 184 NFD 186 D Sbjct: 318 KVD 320 >gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 325 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDAV ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NLSR++R R + +V+ LS E Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L GH LL A M +G + + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 329 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR RAG+PVS+A ++ P+ EF V + L Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ + +PL E FF ++ + + GG LS+ L L+ LR+R+ + K++A Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ SL +Y SP L+ND G+ +L A +L+G+ + Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322 Query: 182 MIN 184 MI Sbjct: 323 MIK 325 >gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619] gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619] Length = 293 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 102/184 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + ++ P LD VRS++AG ++DAV + S +P+RS RV Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++ Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A I+G+LP C+ +P Y+ + D G M+L +A A ++G +V+ Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287 Query: 181 LMIN 184 M+ Sbjct: 288 RMMR 291 >gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01] gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01] gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116] Length = 300 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 94/183 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+ +R F + FP+AL+I++ +V AG + A++ + + + EF+ + + L Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ DP G ++L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVR 296 >gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 322 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR + + P+A++++VRS+R G P ++ + + SDP+ SE + + Sbjct: 136 VSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ESI M + +Q++ F + + +Q GGNL+E LA L+ ++R R + KV+ Sbjct: 196 YGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ EA+ S + P + P Y + +I+ P A + + ++MR Sbjct: 256 VITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 VLVNIKV 322 >gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510] gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510] Length = 319 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 115/184 (62%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +RT +FLD P+A+D++VR+ RAG+PVS+A+ ++ +PVRSEFRRV + Sbjct: 133 LGMLTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVS 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L +++ + + L + FF + VQ + GG L+E L NLS ILR RK+M+ KV+ Sbjct: 193 IGVDLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E + SA I+ SLPF L++ P Y+ L DP GH LL AAA + +G+ V+ Sbjct: 253 ALTAEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDPLGHKLLAAAAACLGLGMFVIG 312 Query: 181 LMIN 184 M Sbjct: 313 RMTR 316 >gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 319 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +R D P D++ R++ +G +S A ++ Q P+ EF+ + Q+LG Sbjct: 138 QRRNQRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLG 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + R + E+ F+ + VQ Q GG+ S+ L NL+ +R+R + KV+A+ Sbjct: 198 LPYEITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAI 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E +A AW++ +LPF +Y Y +VL+ P ++ + A + +GI +R + Sbjct: 258 TSEGRAQAWVLSALPFVSFGGIYLLDRDYASVLLERPN---VMAIMAVSIALGIAWIRQI 314 Query: 183 INFD 186 + + Sbjct: 315 VCIE 318 >gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 1/183 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KKR + + P+AL I ++RAG +S A+ V+V P+ EF V++ Q LG+S Sbjct: 104 RKKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVS 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ +++AL+ Sbjct: 164 FDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTA 223 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + ++ P + ++Y P M++L G ++L V A +++G ++R ++ Sbjct: 224 QGRIQGLVMTLFPLLLMGVLYLMQPT-MSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVA 282 Query: 185 FDV 187 D+ Sbjct: 283 IDI 285 >gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 325 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 139 LNRDTAKRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318 Query: 181 LMINFDV 187 +I D+ Sbjct: 319 KLIRIDM 325 >gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 325 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + ++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 292 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 100/184 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++ + ++ P LD VRS++AG +SDAV V + +P+RS RV Sbjct: 107 LSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQ 166 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L +++S + E+ F+ + + + GGN SE + NL +++R+ + +++ Sbjct: 167 LGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLR 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +AWI+G+LP + F +PGY+ + D G M+L A A +G +V+ Sbjct: 227 AMTGETRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLW 286 Query: 181 LMIN 184 M+ Sbjct: 287 RMMR 290 >gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 275 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 90/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R P+ L +I +RAG A+ V +S P+ EF ++ Sbjct: 89 LSWMRTRRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIR 148 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ + + + + ++GGNL++AL +++ LRD+ M+ K++ Sbjct: 149 LGIDLDVAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIR 208 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ P M L P G L V AA L+G + Sbjct: 209 ALTSQGRMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLGYASIA 268 Query: 181 LMINFDV 187 ++ +V Sbjct: 269 RIVRINV 275 >gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 303 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+ +F D FP+AL+++ +V +G + A+ + V EF+R+ E LG Sbjct: 118 WLGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGKVGKEFKRMGEQLQLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ ++++ K AL Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ S+PF ++ + SP ++ +P G +L IGI+ + L+ Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297 Query: 183 IN 184 + Sbjct: 298 MK 299 >gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans] gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 295 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 75/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + + + + A+ + + EF+ + +G + Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSSVGLLQALERCGKDLTGQLGQEFKSIHRRLSIGEDPA 174 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T+I GG + E ++ L R++ D M+ K +A++ EA Sbjct: 175 TVFDDSYDRYPYKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ P + F P + L+NDP G +L L G+ ++ ++ Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLVNDPTGRYVLYYVFGSELFGMGIIWWLMR 292 >gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1] Length = 337 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 88/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G + + Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331 Query: 181 LMINFD 186 M Sbjct: 332 RMARLR 337 >gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 316 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P+ALD++ R + G P++ + + DP+ +EFR + + G SL+ Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R + +++ + S + +Q GGNL L L+R++R R M+ +V A+S E Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ ++P + T+P Y + +DP + G A +L +++R +++F Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315 Query: 187 V 187 V Sbjct: 316 V 316 >gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 337 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 88/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G + + Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331 Query: 181 LMINFD 186 M Sbjct: 332 RMARLR 337 >gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 199 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 80/180 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ F + FP + ++ + +G+ + A+ + P+ EF + + G Sbjct: 17 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 76 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + P +E FF ++I GG + E ++ L R + D M+ K +A++ Sbjct: 77 VMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTS 136 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ ++ Sbjct: 137 EARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 196 >gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 326 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3] gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3] Length = 308 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 95/184 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ +F FP ++ I R+V AG+ V A+A + + EF + + +G Sbjct: 123 FIRAQQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIG 182 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL +++ + +P FFS + + + GG L E L +LSR L + +K K+++L Sbjct: 183 ISLKQALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSL 242 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A ++ LP C+ +++YF SP VL + P G+ +L M +G+ ++ ++ Sbjct: 243 TAEPRMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302 Query: 183 INFD 186 Sbjct: 303 TKVR 306 >gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 304 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K++ ++ F+++FP+AL+I+ ++ +G + A + Q ++ V EF+ + E + Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF + I + GG L + + ++R++ + ++++ K + Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E++ SA I+G LP ++ F SP + ++ G + IG ++ Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFIIWR 298 Query: 182 MIN 184 +I Sbjct: 299 IIK 301 >gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191] gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191] Length = 535 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+L ++R K + ++L ++ S++AG+ + A ++ P+ EF VI+ Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + + +S+ I +Q Q+GGNL++ + +R+ ++ K+Q Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ + + + ++G +P+ + ++++ P M G ++L ++L+G+ ++ Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528 Query: 181 LMINFDV 187 + V Sbjct: 529 KLGEIKV 535 >gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ KR F + FP+AL+I++ +V AG + A+ + + + EF+R+ + L Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L + + ++ K A Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ +P L+ + +P ++ +++DP G LL +G+ ++ L Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVK 296 >gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1] gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 314 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR LL IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313 >gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703] Length = 293 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR +F FP +L +I + +G ++ + + S P+ EF V ++ Sbjct: 108 RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 167 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 168 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 227 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 228 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 287 Query: 182 MI 183 M+ Sbjct: 288 ML 289 >gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp. palearctica Y11] Length = 293 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR +F FP +L +I + +G ++ + + S P+ EF V ++ Sbjct: 108 RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 167 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S R E F T+I + Q GG L E + LS ++ K + K Sbjct: 168 GESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 227 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 228 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 287 Query: 182 MI 183 M+ Sbjct: 288 ML 289 >gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 326 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 326 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 97/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAMLFPGCLAYLYMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 326 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G+++ + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 302 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 90/182 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L+KKR +F FP+AL+I++ +V AG + +++ + + V + F+ + E LG Sbjct: 118 WLLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + R ++ P FF I GG L +A L R+L D + + K A+ Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAM 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ SLPF + F SP +N ++ DP G +L +G+ ++ L+ Sbjct: 238 TSEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLL 297 Query: 183 IN 184 I Sbjct: 298 IR 299 >gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 317 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 1/188 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R K + P+A+D IVRS++ G V A + P+ ++FR + E Sbjct: 130 LMIRRARREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMA 189 Query: 61 LGLSLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +GL I R P L +V +Q + GG L++ LA L+ +R R + + +V Sbjct: 190 MGLPFETVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRV 249 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A + E + +A+I+G LP + + + P YM V + P G LL V G +VM Sbjct: 250 RASTAEGRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVM 309 Query: 180 RLMINFDV 187 R M+ V Sbjct: 310 RAMLRVKV 317 >gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 356 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +R + P+ LD IVR + G V A + + P+R V Sbjct: 170 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLR 229 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + +E+ V+ + + GG L +S +RD + + ++ Sbjct: 230 SGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 289 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 290 AMSSETRLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 349 Query: 181 LMINFD 186 + Sbjct: 350 RLARLK 355 >gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700] gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700] Length = 294 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 75/180 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 112 QHRNKKTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGED 171 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 P +E FF T++ GG + E ++ L R++ D M+ K +A++ Sbjct: 172 PMAVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTS 231 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ SA I+ LP + F P LINDP G +L L G+ ++ ++ Sbjct: 232 EARMSAMIVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLMR 291 >gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 326 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + L Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + EA+ASA I+ +L +Y SP + L +DP G +L A + +G++V + Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHV 320 Query: 182 MIN 184 M+ Sbjct: 321 MVK 323 >gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] Length = 281 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 93/186 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K LIKKR K + FP+ L + ++++G + ++ +I S P+ EF + L Sbjct: 95 KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ES++ +++ P +S F T++ V + GGNL+ L LS +R+ + K+ A Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ +++ +WI+ LP + ++ +P N G+ L + + G + M+ Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMKK 274 Query: 182 MINFDV 187 ++ V Sbjct: 275 LMKIRV 280 >gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] Length = 294 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ F FP + I+ + +G + A+ + + EF+ + + +G Sbjct: 113 RRNHKMFNAMFPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDP 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 P +E FF T+I GG + E ++ L RI+ D K M+ K +A++ E Sbjct: 173 VTVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA I+ S P + FT P + LINDP G +L LIG++++ ++ Sbjct: 233 ARMSAMIVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLMR 291 >gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 304 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 92/181 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ KF ++FP+AL+I+ ++ +G + A + Q + V +EF+ + E +G Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ +P G + IG + + ++ Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300 Query: 184 N 184 Sbjct: 301 R 301 >gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] Length = 284 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 81/183 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ F DFP AL +I + +G ++ + + S P+ +EF + + Sbjct: 98 LRLSRKRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLN 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + E F T+ + Q GG L E + LS ++ K + K Sbjct: 158 VGESPEAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKA 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+YF P + + + P G M+ ++GI+++R Sbjct: 218 VMTAQVRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIR 277 Query: 181 LMI 183 M+ Sbjct: 278 KML 280 >gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 341 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 155 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLA 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG + +L NL++ L DRK + +V+ Sbjct: 215 LGRSVDDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVR 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L L+ ++ G + + P G +L+ ++ +G V+R Sbjct: 275 TMLSEVNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIR 334 Query: 181 LMINFDV 187 + +V Sbjct: 335 RLGKIEV 341 >gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 306 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 LTILESRQQKEFEMAFPDALNMLASAVSSGESLMHSIIFVGKSLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 MGESPDTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L IGI ++ Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPILYYMLISEAIGISIVW 299 Query: 181 LMIN 184 ++ Sbjct: 300 GLMR 303 >gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] Length = 293 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 75/173 (43%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F DFP L +I + +G ++ + + P+ E + ++G S Sbjct: 118 FKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESPETVFYD 177 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + E F T+I + Q GG L E + LS+++ K + K ++ + + S Sbjct: 178 AYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQTRMSVN 237 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ +PF S +YF P + + N P G ++ + +IGI ++R M+ Sbjct: 238 ILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSMLR 290 >gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 314 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR LL IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313 >gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 327 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR V+AG+P ++A +I P+ E + + L Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLSL +++ +PL E FF+ ++ + + GG LS+ L LS LR+R+ + K++A Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ L +YF SP L++DP G+ +L A +L G+ + Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320 Query: 182 MIN 184 MI Sbjct: 321 MIK 323 >gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 317 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 108/179 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ AK P+AL +IVRS+R G+P+S A+ ++ ++ P EFR + + +G SL Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKSL 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ E Sbjct: 195 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 255 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313 >gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 281 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K+R KF +AL + + +AGL A+ + ++ P+ EF ++ Sbjct: 95 VKYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVK 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ M + + ++ ++ QLGGN++E +S ++R+R ++ K+ Sbjct: 155 LGVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKID 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + K WI+ S+P + ++ P M +++ G++L+ V A ++GI+++R Sbjct: 215 ALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIR 274 Query: 181 LMINFDV 187 ++N D+ Sbjct: 275 RIVNIDI 281 >gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 304 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 93/181 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ KF +FP+AL+I+ ++ +G + A + Q ++ V +EF+ + E +G Sbjct: 121 LKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ +P G + IG + + L++ Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLIL 300 Query: 184 N 184 Sbjct: 301 R 301 >gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 145 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 205 TGVEIDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + NDP G MLL A L G + + Sbjct: 265 AMSAETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAGSVWLY 324 Query: 181 LMINFD 186 M Sbjct: 325 RMARLR 330 >gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 356 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 170 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 229 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 230 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 289 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ Sbjct: 290 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 349 Query: 181 LMINFD 186 + N Sbjct: 350 RLANLR 355 >gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] Length = 293 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 79/180 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ +F + FP + I+ + +G + A+ S + EF + + +G Sbjct: 111 QRRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAIHKRLAIGED 170 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + P +E FF T+I V GG + E + L R++ D K M+ K A++ Sbjct: 171 ANSVFEDSYSRYPYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKSAMTS 230 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ SA I+ S P + F P L+NDP G M+L +G+ ++ ++ Sbjct: 231 EARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMILYYVLGSESLGMGIIWWLMR 290 >gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] Length = 359 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 173 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 232 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 233 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 292 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ Sbjct: 293 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 352 Query: 181 LMINFD 186 + N Sbjct: 353 RLANLR 358 >gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans C54] Length = 281 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 92/176 (52%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL ++ ++RAG+ + A+ +V Q P+ EF ++ Q LG+ E+++R Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + M + + + Q GGNL+EAL ++++ L R ++A+++ L+ + + AW Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP + + P M L + P G +L V G++++R ++ D+ Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281 >gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 305 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 121 WLQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S E + P FF + GG L + ++ L+R++ D + ++ K AL Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ + PF ++ F SP ++ G +L IG++++ + Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLIIWGL 300 Query: 183 IN 184 + Sbjct: 301 LK 302 >gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T] Length = 289 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 94/184 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R P+AL +I +RAG+ ++ A+ +V + P+ EF + LG+ Sbjct: 106 LRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLGI 165 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + + + ++ + + ++ GG+L+EAL + +R + M+ K+ AL+ Sbjct: 166 PLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALT 225 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + K A ++G LP + ++ P M L + P G L V A ++G++++R ++ Sbjct: 226 AQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRIV 285 Query: 184 NFDV 187 DV Sbjct: 286 AIDV 289 >gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 94/182 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR F FP+AL+I++ +V AG + A + + V EF+ + + LG Sbjct: 116 WLQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLG 175 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R + P E FF+ I GG L LA L RIL D + +++K A+ Sbjct: 176 ENAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAM 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA ++ ++P + +V P +++ ++NDP+G M+L ++G+ V+ L+ Sbjct: 236 TSEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLL 295 Query: 183 IN 184 + Sbjct: 296 VK 297 >gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 319 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 98/178 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R L+ FP+AL IVR VR G+PV +A+ V+ P EF R+ + +G L Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +M L E FF+T IS+Q++ GG L++ L L+ ++R R MKA+ AL+ EA Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+G +P + + P Y+ VL G+++L A + G +VMR +I Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315 >gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 296 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 4/187 (2%) Query: 3 HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +L +R KF + A+ +I ++RAG V+ A+ + SDP++SEFRR+ Sbjct: 109 YLKVRRDSGKKKFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDI 168 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + E++ ++ +++ F+T + + Q GG+L++ N+ + +R R + + Sbjct: 169 RAGTPVPEALDKVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAI 228 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + + I+ LP + + SP + + P G L+ +A + ++M Sbjct: 229 RSKTSLNRIESQIMVGLPVFMMAALLAISPSH-REFYSQPSGWALIALAVVLDTLAYLMM 287 Query: 180 RLMINFD 186 R M + Sbjct: 288 RKMGDVK 294 >gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 305 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 87/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +K +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 121 WLQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S E + P FF + GG L + ++ L+R++ D + ++ K AL Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ + PF ++ F SP ++ G +L IG++++ + Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLIIWGL 300 Query: 183 IN 184 + Sbjct: 301 LK 302 >gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 316 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 90/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F P+ L + +RAG + A+ ++ P+ E R++ Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L ES++ + R ++ + S I + ++GG+L+E L ++ +RDR +K +V+ Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA ++ +LP + + +P Y V G ++L A A + +G + + Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVFTTTFIGFVMLAAAVALLAVGGLWLS 309 Query: 181 LMIN 184 +I Sbjct: 310 RIIK 313 >gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR +F FP +L +I + +G ++ + + S P+ EF V ++ Sbjct: 95 RLSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNV 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 155 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + + S II +P S L+YF P + + + P G ++ LIG++V+R Sbjct: 215 MTAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRK 274 Query: 182 MI 183 M+ Sbjct: 275 ML 276 >gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147] Length = 258 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 83/186 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + + P+ LD IVR V G V A + + P+R V Sbjct: 73 LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 132 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 133 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 192 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 193 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 252 Query: 181 LMINFD 186 + Sbjct: 253 RLARLR 258 >gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786] Length = 268 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 83/186 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR + + P+ LD IVR V G V A + + P+R V Sbjct: 83 LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 142 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 143 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 202 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 203 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 262 Query: 181 LMINFD 186 + Sbjct: 263 RLARLR 268 >gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 342 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + P LD IVR + G V A + + P+R V Sbjct: 156 LTMRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S++ + ++E+ V+ + + GG L ++ +RD ++ + ++ Sbjct: 216 TGVEIDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++ LP + + ++P Y + DP G L+ +A ++G ++ Sbjct: 276 AMSSETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLY 335 Query: 181 LMINFD 186 + N Sbjct: 336 RLANLR 341 >gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia pseudotuberculosis IP 31758] gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia pseudotuberculosis IP 31758] Length = 291 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 76/183 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI ++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 319 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 108/179 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ AK P+AL +IVRS+R G+P+S A+ ++ ++ P EFR + + +G +L Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKNL 196 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ E Sbjct: 197 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 256 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 257 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315 >gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 322 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 79/183 (43%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 140 RIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGV 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 200 EIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP + + V T+P Y+ + ND G LL +A G + + M Sbjct: 260 SETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLYHMA 319 Query: 184 NFD 186 Sbjct: 320 KLR 322 >gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 335 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 153 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 213 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 273 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 332 Query: 184 NFD 186 Sbjct: 333 RLR 335 >gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 335 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 153 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 213 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 273 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 332 Query: 184 NFD 186 Sbjct: 333 RLR 335 >gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 79/183 (43%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 RIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGV 204 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 205 EIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMS 264 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP + + V T+P Y+ + ND G LL +A G + + M Sbjct: 265 SETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLYHMA 324 Query: 184 NFD 186 Sbjct: 325 KLR 327 >gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 329 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 147 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 206 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 207 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 267 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 326 Query: 184 NFD 186 Sbjct: 327 RLR 329 >gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70] Length = 291 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 76/178 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + F FP + I+ + G + ++ + + EF+ + + LG Sbjct: 111 RNQKMFNAMFPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPM 170 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 P +E FF T+I GG + E + L R++ D K M+ K +A++ EA Sbjct: 171 SVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEA 230 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA+I+ S P + F P + L+NDP G +L G++++ ++ Sbjct: 231 RMSAFIVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288 >gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MK K+ + F DFP L +I + +G ++ + + S P+ E + + Sbjct: 1 MKLSRKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLN 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + E F T+I + Q GG L E + LS+++ K + K Sbjct: 61 LGESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKS 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S II ++P S L+YF + + ++P G M+ IGI V+R Sbjct: 121 VLTAQTRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIR 180 Query: 181 LMIN 184 M+ Sbjct: 181 KMLR 184 >gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264] gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 336 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 330 Query: 181 LMINFD 186 + Sbjct: 331 RLARLR 336 >gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 261 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 79/183 (43%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 79 RIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGV 138 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 139 EIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMS 198 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP + V T+P Y++ + ND G L +A + G + M Sbjct: 199 SETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAGGAWLYRMS 258 Query: 184 NFD 186 Sbjct: 259 RLR 261 >gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 310 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 96/186 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KKR ++ P +D++ RS AG + A+A++ ++ P+ EFRR Sbjct: 124 LHYRRKKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLD 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + LS+ + + + L ++ ++ + + + GGNL L ++ ++RDR N + +++ Sbjct: 184 MNLSVPAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +ASA ++ + ++ P +++ L DP G++LL +A +IGI+ + Sbjct: 244 ASTGAGRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVS 303 Query: 181 LMINFD 186 ++ D Sbjct: 304 TLLRTD 309 >gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10] gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10] Length = 270 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263 Query: 181 LMI 183 M+ Sbjct: 264 KML 266 >gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 223 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR +F FP +L +I + +G ++ + + S P+ EF V ++ Sbjct: 38 RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 97 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + E F T+I + Q GG L E + LS ++ K + K Sbjct: 98 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 157 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + + S II +P S L+YF P + + + P G ++ + +IG++V+R Sbjct: 158 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 217 Query: 182 MI 183 M+ Sbjct: 218 ML 219 >gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 311 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F+ P ++ + AGL + ++A+ + P E R V + Sbjct: 125 LNWHRTKRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLG 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +L +++ + +P +E+ + + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 185 VGRTLDDALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVR 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + A+A+ + ++ LV PG ++ + G + + V+ +G + +R Sbjct: 245 TQLSQINATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIR 304 Query: 181 LMINFDV 187 + D+ Sbjct: 305 RVSKIDI 311 >gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 304 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 89/183 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +++ F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 SKLKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 272 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 101/186 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R +F P AL ++ ++RAG+ ++ + +V QS P+ EF ++ Q Sbjct: 86 VSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQR 145 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ + MP S + + SQ GGNL+EAL ++++ LR R ++AK+Q Sbjct: 146 LGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQ 205 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + AWI+G+LP + ++ P M +L + P G +L + G++++R Sbjct: 206 ALTSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIR 265 Query: 181 LMINFD 186 ++ + Sbjct: 266 RIVRIE 271 >gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC 10229] gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20] gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU] gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU] gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 306 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 124 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 183 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 184 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 243 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 244 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 303 Query: 184 NFD 186 Sbjct: 304 RLR 306 >gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 293 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 291 >gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 404 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 80/186 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +R + P+ LD IVR + G V A + + P+R V Sbjct: 218 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLR 277 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++S + +E+ V+ + + GG L +S +RD + + ++ Sbjct: 278 SGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 337 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 338 AMSSETRLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 397 Query: 181 LMINFD 186 + Sbjct: 398 RLARLK 403 >gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + A+++ + P E +V Sbjct: 126 LNWQRQKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 186 VGHSVDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + L+ SPG ++ + G + A A IG ++R Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 304 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 NKLKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEAPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 286 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 86/184 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R + L P +D + R+ R G + + ++ + P+ E R + Sbjct: 98 LMTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQ 157 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++++E++ + + + +T +SV Q GG+L L L+R LRDR +++ Sbjct: 158 MGVTMNEALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLR 217 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ ++A+A ++ LP + F P Y+ L+ G + ++G + + Sbjct: 218 AITAGSRATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFITIAGVILEIVGAIWIL 277 Query: 181 LMIN 184 ++N Sbjct: 278 KILN 281 >gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292 >gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 90/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292 >gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + ++ P LD VRS+++G +SDAV + + P++ R+ Sbjct: 109 VSWRYRVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQ 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL ++ E F+ + V + GGN SE + NL R++R+R+ +++ Sbjct: 169 LGVSLPDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLR 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + ND G ++L +A L+G +++ Sbjct: 229 AMTGETRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLR 292 >gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292 >gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH] Length = 261 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 76 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 135 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 136 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 195 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 196 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 255 Query: 181 LMINFD 186 + Sbjct: 256 RLARLR 261 >gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 90/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292 >gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str. 91001] gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953] gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua] gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516] gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F] gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola] gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis FV-1] gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92] gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516] gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92] gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F] gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis Angola] gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004] gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038] gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 291 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 304 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 91/183 (49%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +L ++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E + Sbjct: 119 NNLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R P E FF++ I + GG L + + ++R++ D + ++ K A Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ EA+ASA II LP ++ FTSP + ++ + G + A L+G + L Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWL 298 Query: 182 MIN 184 ++ Sbjct: 299 ILR 301 >gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 314 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + AGL + A+ + + P E V Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +++ M + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGVPMEDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A A +G +++R Sbjct: 248 TQLSQVNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIR 307 Query: 181 LMINFDV 187 M DV Sbjct: 308 RMSRIDV 314 >gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680] gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 313 Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 89/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F+ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 127 LNWQRQKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLT 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ Sbjct: 187 LGRSVDDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + L L+ ++ G + + G L+ ++ +G V+R Sbjct: 247 TMLSEVNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIR 306 Query: 181 LMINFDV 187 + +V Sbjct: 307 RLGKIEV 313 >gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292 >gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] Length = 279 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 80/183 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K F D P + +I + +G ++ + + S P+ E + + Sbjct: 93 LKISRKTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLN 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + + E F T+I + Q GG L E ++ LS+++ K + K Sbjct: 153 LGESPEAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKA 212 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P STL+YF P M + N P G M+ +IGI ++R Sbjct: 213 VMTAQTRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIR 272 Query: 181 LMI 183 M+ Sbjct: 273 TML 275 >gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 87/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP + +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 236 MTAVVLALLPISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 292 >gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 145 LTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + QE +V+ + + GG L ++ +RD + + ++ Sbjct: 205 TGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + DP G MLL +A + G + + Sbjct: 265 AMSAETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAGSVWLY 324 Query: 181 LMINFD 186 M Sbjct: 325 RMARLR 330 >gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 82 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 141 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 142 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 201 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 202 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 261 Query: 184 NFD 186 Sbjct: 262 RLR 264 >gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 386 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 80/185 (43%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +R + P+ LD IVR + G V A + + P+R V Sbjct: 201 SMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRS 260 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++S + +E+ V+ + + GG L +S +RD ++ + ++ A Sbjct: 261 GVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVA 320 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +S E + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 321 MSSETRLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLLYR 380 Query: 182 MINFD 186 + Sbjct: 381 LARLK 385 >gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 90/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292 >gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 316 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 134 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 193 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 194 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 253 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 254 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 313 Query: 184 NFD 186 Sbjct: 314 RLR 316 >gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF+ P I+ + +AGL + A+ + + P E +V + Sbjct: 126 LNWQRQKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ Sbjct: 186 VGHSIDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + L+ + G ++ + + G + VA A +G ++R Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4] Length = 242 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 57 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 117 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 176 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + Sbjct: 177 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 236 Query: 181 LMINFD 186 + Sbjct: 237 RLARLR 242 >gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 256 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 74 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 133 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 134 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 193 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 194 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 253 Query: 184 NFD 186 Sbjct: 254 RLR 256 >gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 312 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + A+ + + P E +V Sbjct: 126 LGWQRQKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ Sbjct: 186 VGHSIDDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ L L+ + G ++ + + G + VA IG ++R Sbjct: 246 TQLSQVTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIR 305 Query: 181 LMINFDV 187 M DV Sbjct: 306 RMSKIDV 312 >gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74] Length = 314 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 89/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T +++ ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 LGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLGRIDV 314 >gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01] gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01] Length = 304 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 89/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +SA II +LP ++ TSP ++ + G + LIG ++ +++ Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLISMILR 301 >gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 326 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 78/183 (42%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGV 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 204 DIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP V + V TSP Y + ND G L+ +A IG + + Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIGGFWLFRLA 323 Query: 184 NFD 186 Sbjct: 324 RLR 326 >gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 291 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 78/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 314 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR +F++ P I+ + +AGL + AV + + P E +V Sbjct: 128 LNWQRQKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G ++ + P G + +A +G +++R Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX] gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX] Length = 310 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 89/186 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F P ++ + +AGL + A+ + + +DP +E R V E+ Sbjct: 124 LNRQEEKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIK 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E+++ + + MP +E+ + + V ++ GG L AL N+S L +RK + +V+ Sbjct: 184 VGQPFEEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVR 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E ++AW + + L+ PG + + G ++LG A IG +V+R Sbjct: 244 TILSETTSTAWTLLLMGVGSLFLLNALMPGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303 Query: 181 LMINFD 186 M D Sbjct: 304 RMSRID 309 >gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 326 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 79/183 (43%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R K + P+ LD IVR V G V A + + P+R V + G+ Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGV 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 204 EIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP V + V TSP Y + D G L+ +A A IG + + Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIGGFWLYRLA 323 Query: 184 NFD 186 Sbjct: 324 RLR 326 >gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51] gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51] Length = 293 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 97/179 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ P LD VRS++AG ++DAV + S +P+R+ RV LG+ L Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++A++ E Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A I+G+LP + +P Y+ + D G ++L +A A ++G +V+ M+ Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMMR 291 >gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] Length = 299 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 95/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +KR +F D+ P+ +D ++R++R G P+ I Q F ++++ + Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++++ + + MP+ E F + V+S+Q + GG L+ L L LR R + A +Q Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ +LP V +++ T + N L+ G +++ +L G+ ++R Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293 Query: 182 MINFD 186 M Sbjct: 294 MTQLK 298 >gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 326 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 78/183 (42%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGV 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 204 DIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP V + V TSP Y + ND G L+ +A IG + + Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIGGFWLFRLA 323 Query: 184 NFD 186 Sbjct: 324 RLR 326 >gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27] Length = 217 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 91 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210 Query: 181 LMI 183 M+ Sbjct: 211 KML 213 >gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633] gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633] Length = 289 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 112 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 171 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 172 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 231 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 232 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 286 >gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato Max13] gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato K40] gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 95/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + + P LD VRS+++G ++DAV + + P++ R+ Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+SL +++ E F+ + V + GGN SE + NL +++RDR+ +++ Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLW 289 Query: 181 LMIN 184 M+ Sbjct: 290 RMLR 293 >gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 220 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 38 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 97 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 98 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 157 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 158 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 217 Query: 184 NFD 186 Sbjct: 218 RLR 220 >gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 314 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A +G +++R Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 211 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 29 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 88 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 89 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 148 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 149 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 208 Query: 184 NFD 186 Sbjct: 209 RLR 211 >gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14] gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14] Length = 313 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + AV + + P E +V Sbjct: 127 LSWQRQKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 187 LGASMDDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + VA A +G +++R Sbjct: 247 TQLSQVNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIR 306 Query: 181 LMINFDV 187 + DV Sbjct: 307 RLSRIDV 313 >gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 312 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 84/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V Sbjct: 126 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 186 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + +A +G +++R Sbjct: 246 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSRIDV 312 >gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 215 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 33 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 92 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 93 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 152 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 153 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 212 Query: 184 NFD 186 Sbjct: 213 RLR 215 >gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC 27064] gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 313 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KRT F+ P ++ + +AGL + A+A+ + DP E V + Sbjct: 127 LEWQRVKRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLA 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V Sbjct: 187 VGQSLDDALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVT 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K +A + L ++ +PG ++ + G A +G ++R Sbjct: 247 TTLSQIKVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQGATLAAFGLYGLGAFLIR 306 Query: 181 LMINFDV 187 + V Sbjct: 307 RLSRIQV 313 >gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 216 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 34 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 93 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 94 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 153 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 154 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 213 Query: 184 NFD 186 Sbjct: 214 RLR 216 >gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 206 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 24 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 83 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 84 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 143 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 144 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 203 Query: 184 NFD 186 Sbjct: 204 RLR 206 >gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 303 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 91/181 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA++SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 Query: 184 N 184 Sbjct: 300 R 300 >gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] Length = 303 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 91/181 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA++SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 Query: 184 N 184 Sbjct: 300 R 300 >gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 321 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 87/186 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K A+ P LD VR V G V A + + DP++S + Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + Sbjct: 192 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SAW++ LP V L+ + Y + +D G ++GVAAA + G++++ Sbjct: 252 AMTAETRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLY 311 Query: 181 LMINFD 186 + D Sbjct: 312 RLAKLD 317 >gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] Length = 302 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K + +F + L +I R+V AGL V A+ + + EF + + LG Sbjct: 115 YRRKLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALG 174 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL +++ +P +FS + + GG L + L LSR + D + M+ KV++L Sbjct: 175 LSLRDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSL 234 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + + + P + LIN G +L + + G +++ + Sbjct: 235 TSEPRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLILNSL 294 Query: 183 IN 184 Sbjct: 295 TR 296 >gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110] gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 97/182 (53%), Gaps = 1/182 (0%) Query: 4 LIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R A + P+A+ ++ +VR+GLPV +A + + P +F V +LG Sbjct: 152 WQQRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +E++ + R + E + F+ ++VQ + GG+L+E L NL +R R + A+ +AL Sbjct: 212 RPPAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E S+ + P ++Y ++P +++L DP G+ LL A A +L+G +V+ M Sbjct: 272 AGEVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWM 331 Query: 183 IN 184 + Sbjct: 332 VR 333 >gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 285 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 81/184 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R + L P L+ + R+ G V + ++ + P+ E + + Sbjct: 97 LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++++ + L + F + V Q GG+L L LS+ +RDR +++ Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ ++A+A ++ LP V P Y + L+ G +A +IG + + Sbjct: 217 AMTAASRATALLMVVLPPGVLIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIWVL 276 Query: 181 LMIN 184 ++ Sbjct: 277 RILR 280 >gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis MSMB43] Length = 221 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 39 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 98 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 99 EIDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 158 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 159 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLYRLA 218 Query: 184 NFD 186 Sbjct: 219 RLR 221 >gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2] Length = 319 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K +F+D FP+A+D + R +RAGLP++ AV I ++ P+ + F + + Sbjct: 131 LVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELK 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +++ + + L + FF+ +++Q GGNL L LS+I+R R+ ++ K + Sbjct: 191 IGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAK 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + +A+ +G +P S ++ PGY+ L DPRG ++L A + + + MR Sbjct: 251 AATGEIRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMR 310 Query: 181 LMIN 184 +++ Sbjct: 311 MIMR 314 >gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 303 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 91/181 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA++SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 Query: 184 N 184 Sbjct: 300 R 300 >gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] Length = 326 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 83/175 (47%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + P A+D I R RAG+P A + + E R + LG+ L + + Sbjct: 149 EELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQVL 208 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +PL E FF+ ++ + + GG L++ L L+ LR+R + KVQA + EA+AS Sbjct: 209 QESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARAS 268 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ L V Y +P L+ DP G +LG AAA + G+ V LM+ Sbjct: 269 IKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323 >gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] Length = 181 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F DFP + +I + +G ++ + + + P+ E + +LG S Sbjct: 6 FHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVFYD 65 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + E F T+I + Q GG L E LS ++ K + K ++ + + S Sbjct: 66 AYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMSVN 125 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 II +P S L+YF P + + N G ++ A LIG+ ++R M+ Sbjct: 126 IISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKMLR 178 >gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 326 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 80/183 (43%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGV 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E V+ + + GG L +S +RD ++ + ++ A+S Sbjct: 204 EIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMS 263 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ +P V + V TSP Y + ND G L+ +A A +G + + Sbjct: 264 AETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLYRLA 323 Query: 184 NFD 186 Sbjct: 324 RLR 326 >gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] Length = 198 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 87/177 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 20 RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 80 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 196 >gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 79/186 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + L P+ LD +VR + G A + V P+ ++ + Sbjct: 132 LWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLR 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L ++ + R L E + V + ++ GG + L +S +RDR++ + ++ Sbjct: 192 ASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELH 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+ LP V L+ + GY + D G ++ AA +G + Sbjct: 252 ALSAEVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLY 311 Query: 181 LMINFD 186 + Sbjct: 312 RLARLK 317 >gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 237 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 83/183 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 55 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 114 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 115 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 174 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G + + Sbjct: 175 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 234 Query: 184 NFD 186 Sbjct: 235 RLR 237 >gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 324 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + +P+R V Sbjct: 139 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLR 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 199 SGVEIDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + NDP G LL +A + G + + Sbjct: 259 AMSAETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLAFLAQVAGSLWLY 318 Query: 181 LMINFD 186 M Sbjct: 319 RMARLR 324 >gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea DSS12] Length = 311 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 92/183 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + + +F FP L I R+V AG+ V A+A + + EF + + +G+ Sbjct: 128 MRSMQMKQFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGI 187 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL +++ + +P FF+ + + + GG L E L +L R L D +K K+++L+ Sbjct: 188 SLKQTLEQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLT 247 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A I+ SLP + ++++F +P VL N GH +L + + +G+ ++ ++ Sbjct: 248 AEPRMTALILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINMLT 307 Query: 184 NFD 186 Sbjct: 308 KVR 310 >gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 294 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 86/182 (47%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R P ++ I+RS++AG +S AVA + PV +RV +G Sbjct: 111 WRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMG 170 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SLS+++ + + + + + + GG+ + + + +LR R+ + +++A+ Sbjct: 171 ASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAM 230 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SA ++ LP V +P Y ++ G LLG A A+ ++GI ++ M Sbjct: 231 TGETRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRM 290 Query: 183 IN 184 + Sbjct: 291 VK 292 >gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 257 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 84/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 72 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 131 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 132 TGVEIDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 191 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + ND G +LL A L G + + Sbjct: 192 AMSAETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAGSVWLY 251 Query: 181 LMINFD 186 M Sbjct: 252 RMARLR 257 >gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100] gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100] gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 96/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + ++R KF+D + L I+ ++AG +++ +V +P+ EF +V+ Sbjct: 105 VRMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+Q Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + I+ +PF + + P ++ + N G +LL +IG ++++ Sbjct: 225 ALTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIK 284 Query: 181 LMINFDV 187 ++ V Sbjct: 285 KLVTIKV 291 >gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 305 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 90/181 (49%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300 Query: 184 N 184 Sbjct: 301 R 301 >gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 305 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 90/181 (49%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 Query: 184 N 184 Sbjct: 301 R 301 >gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 312 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F++ P ++ + +AGL + A+ + V + +P + E RRV + Sbjct: 126 LNWQRGKRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL ++++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V Sbjct: 186 VGHSLDDALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVT 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L + K +A + L ++ G ++ + G + + VAA G + Sbjct: 246 TLLSQVKVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAGFFFIN 305 Query: 181 LMINFDV 187 + + Sbjct: 306 RLTRVRI 312 >gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074] gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 311 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR F++ P+ ++ + AGL + A+A+ + P E RV + Sbjct: 125 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLA 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ ++ + +P +E+ T + + +Q GG + +L NL+ L +RK + +V+ Sbjct: 185 LGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVR 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A + +L L+ + G + + G +L+ +A +G +V+R Sbjct: 245 TMLSEVHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIR 304 Query: 181 LMINFDV 187 + +V Sbjct: 305 RLGKIEV 311 >gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] Length = 317 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +RT P A I R++RAG + A+ ++ P+ EF E QHLG Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ ++ MVR + + E+ F+ + VQ + GGNL+E L L+ ++R R ++ +V+AL Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + A ++ ++P V + +P Y +VL + +L A IG ++ + Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWEH---YEILIGCAISQCIGAFLISRI 312 Query: 183 INFD 186 +N D Sbjct: 313 VNID 316 >gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] Length = 304 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K + +F N L +I R+V AGL V A+ + + EF + + LG Sbjct: 117 YRRKMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLG 176 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL +S+ +P +FS + + GG L + L +LSR + D + M+ KV++L Sbjct: 177 LSLRQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSL 236 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + +Y P + L N G +L A + G +++ + Sbjct: 237 TSEPRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYAIISISSGTLILNAL 296 Query: 183 IN 184 Sbjct: 297 TR 298 >gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 304 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 186 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301 >gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 90/177 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP ++ +P Y+ + +D G ++L +A A + G +V+ M+ Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRMLR 292 >gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 95/184 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L ++ +F P +D ++R++R G P++D ++ Q + F ++ + + Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + + E F + V+S+Q + GG LSE LA L LR R+ + A +Q Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ +A ++ +LP + +++ T + L+ G +LG + + +G+ ++R Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288 Query: 182 MINF 185 + Sbjct: 289 LTRL 292 >gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 320 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 80/184 (43%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 KR + L P LD +VR + G A + + DP+ ++ Sbjct: 137 RRQAKRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSAS 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R L E + V + + GG L +S +RDR++ + ++ AL Sbjct: 197 PDLGQAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++ LP V L+ + GY + ND G ++ VAAA +G ++ + Sbjct: 257 SSEIRMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLLYRL 316 Query: 183 INFD 186 Sbjct: 317 AKLR 320 >gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 305 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 90/181 (49%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 Query: 184 N 184 Sbjct: 301 R 301 >gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+++ + P E +V + Sbjct: 129 LGWQRQKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLA 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G SL +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 189 VGTSLDDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVR 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + + L+ PG ++ + G + A ++G + +R Sbjct: 249 TQLSQVSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIR 308 Query: 181 LMINFDV 187 DV Sbjct: 309 RFSKIDV 315 >gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329] Length = 304 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 87/175 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + + Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDDVL 186 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+AS Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A II +LP ++ TSP N ++ + G + IG + +++ Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301 >gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + A A +G +++R Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309 Query: 181 LMINFDV 187 + DV Sbjct: 310 RLSRIDV 316 >gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24] gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24] gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24] Length = 316 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G + + P G + A A +G +++R Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309 Query: 181 LMINFDV 187 + DV Sbjct: 310 RLSRIDV 316 >gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44] Length = 327 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 82/183 (44%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K + P LD VR V G V A + + DP++S + G+ Sbjct: 141 RAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ Sbjct: 201 DLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMT 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ LP V L+ + Y + ND G ++ A A + G++++ M Sbjct: 261 AETRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMA 320 Query: 184 NFD 186 D Sbjct: 321 KLD 323 >gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 322 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K A+ P LD VR V G V A + + DP++S + Sbjct: 133 LYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + Sbjct: 193 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SAW++ LP V L+ + Y + ND G ++ AAA + G++++ Sbjct: 253 AMTAEIRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLY 312 Query: 181 LMINFD 186 M D Sbjct: 313 RMAKLD 318 >gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 97/187 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR A+F+D + L I+ ++AG +++ +V +P+ EF +V+ Sbjct: 105 VRMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+Q Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + I+ +PF + + P ++ + + G +LL +IG ++++ Sbjct: 225 ALTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIK 284 Query: 181 LMINFDV 187 ++ V Sbjct: 285 KLVTIKV 291 >gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 91/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V+ ++ + GY+ ++ DP G +L AAA + G +++ + Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168] gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168] Length = 300 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%) Query: 3 HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +L K+ A+ F F AL+II +V AG + + + S V EF + + Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + +E FF + + + GG + E +++L++++ + + M + Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E +AS I+ +P + F SP +VL++DP G MLL A L+G+ + Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294 Query: 181 LMIN 184 MIN Sbjct: 295 TMIN 298 >gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 314 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KR KF++ P I+ + +AGL + A+ + + P E +V + Sbjct: 128 LNWQRQKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ + L L+ G ++ + G + +A + +G +++R Sbjct: 248 TQLSQVTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] Length = 338 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 84/184 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I R K + P+ LD +VR V G V A +G + P+R +V G Sbjct: 155 RRISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTG 214 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++ + + ++E +V+ + + GG L ++ +RD + + ++ A+ Sbjct: 215 VEIDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAM 274 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V + V T+P Y + + G ++L VA ++G ++ M Sbjct: 275 SAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRM 334 Query: 183 INFD 186 Sbjct: 335 ARLR 338 >gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] Length = 308 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 94/185 (50%), Gaps = 1/185 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++++ + F +FP+AL+++ SV AG + A+ + + V EF+R+ E + Sbjct: 121 IRYMDIRTQNAFERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLN 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + P FF + V GG L + L+R+L + ++++ K + Sbjct: 181 IGESTDAVFRKACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKR 240 Query: 121 ALSMEAKASAWIIGSLPF-CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ EA+ S++I+ ++PF + ++ SP + ++NDP G LL IG+ ++ Sbjct: 241 AMTAEARMSSYIVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLLYYMLTSEAIGMGIV 300 Query: 180 RLMIN 184 ++ Sbjct: 301 FWLMR 305 >gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri] Length = 296 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I+ + +G ++ + + + +EF + +LG + Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + R E FF++VI + + GG LS+ + + + + + +K + ++ + Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + +Y+ P + L + G ++ ++GI ++R MI Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292 >gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 +I++R F +AL + +V+AG V AV V + EFR + Sbjct: 66 NRMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIVEEFRYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 QH+ + L E + ++++ F++V + GG+++ + +SR+L D+ ++ Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A K+ I+ +P + + TSPG+++VL +P G + + Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 246 YWLGRRIVDIEV 257 >gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 312 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 87/187 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT F+ P ++ + +AGL + A+ + V + DP R E RRV + Sbjct: 126 LNWQRAKRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG SL +++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V Sbjct: 186 LGRSLDDALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVT 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L + K +A + L ++ G + + G + + +A +G +++ Sbjct: 246 TLLSQVKVTAVAVPVLGLGFLLVINGMRDGALEDMTGALGGRVAVLIATGLYALGFILIN 305 Query: 181 LMINFDV 187 + + Sbjct: 306 RLTRVRI 312 >gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] Length = 329 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 84/184 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I R K + P+ LD +VR V G V A +G + P+R +V G Sbjct: 146 RRISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTG 205 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++ + + ++E +V+ + + GG L +S +RD + + +++A+ Sbjct: 206 VEIDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAM 265 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAW++G LP V + V T+P Y + + G ++L VA IG ++ M Sbjct: 266 SAETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIGGFMLYRM 325 Query: 183 INFD 186 Sbjct: 326 ARLR 329 >gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 306 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 87/184 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L + F + FP+AL ++ +V AG + + + PV EF+++ + Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSFIFVGRTLDGPVGKEFKKMGDRLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + S+ + P FF + GG + E +A L+R++ + ++ K Sbjct: 180 MGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ EA+ SA I+G+LPF L+ + SP ++ P G +L IG+ ++ Sbjct: 240 ALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLIW 299 Query: 181 LMIN 184 L++ Sbjct: 300 LLMK 303 >gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 314 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT +F++ P I+ + +AGL + ++++ + +P E RV Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + L+ PG ++ + G + VA IG +V+R Sbjct: 248 TQLSQVTVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLSRIDV 314 >gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 313 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +K P+ ++ SV+AGL + + ++ + P ++ F + Sbjct: 128 LKVKQQKLVDALNRQLPDICRLLSSSVKAGLNIQQGIELVAREQKPPAQTVFTELAHQLQ 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +L + S ++ +P +E+ + I VQ + GGN++ L +S+ L +R + +++ Sbjct: 188 LGNTLENAFSHIMEELPSKELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E K A I+ +P ++ + PG+ L P G +L + +G +++ Sbjct: 248 GKTAETKFVAMILPFMPIVAGLVLNISFPGFFRPLF-TPLGLILAALVIGIETVGFILIA 306 Query: 181 LMINFDV 187 + + V Sbjct: 307 KITDIRV 313 >gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 312 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 89/184 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +++ K L P LD +VR + G V A + + P+R + + Q Sbjct: 127 LWNRVRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQR 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ +M R LQE+ ++V+ + + GG + + +RDR+ + ++ Sbjct: 187 AGKELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELM 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SAWI+G LP V ++ + GY+ ++ DP G +L A A + G ++ Sbjct: 247 ALSAETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFMLY 306 Query: 181 LMIN 184 + Sbjct: 307 RLAK 310 >gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 83/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KK+ +F + L ++ R+V AGL V A+ + + + EF + + LG+ Sbjct: 116 RRKKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGI 175 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL +++ +P + +FS + + GG L E L NLSR + D + M KV++++ Sbjct: 176 SLRQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMT 235 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A + LP + +V + +L+ G +L AA + G + + Sbjct: 236 AEPRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFGGFTLHSLT 295 Query: 184 N 184 Sbjct: 296 K 296 >gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437] Length = 315 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 90/187 (48%), Gaps = 1/187 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + ++ + AGL + + ++V + PV+ E RV+ Sbjct: 130 LRSRQHIYAQRMDSQLSEVCRLLSSAASAGLSIPQGLRLVVQEMPAPVKIELGRVVREIE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ ++ + Q++ F + +Q + GG+L++ ++ ++ + +RK + ++ Sbjct: 190 LGRDLEGALNDLLERIHTQDMKVFINALIIQRRAGGDLAKVMSQMAATMEERKIIHQTIK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ +A+ SA+ + + ++ ++ G+ + L G ++L + ++G++++R Sbjct: 250 AVTSQARTSAYALPIISLLIAFMLSKMIDGFYD-LFTTLPGMIVLALFVGLQVLGVVLVR 308 Query: 181 LMINFDV 187 N V Sbjct: 309 KFSNIRV 315 >gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] Length = 294 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 92/173 (53%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ P LD VRS+++G ++DAV + ++ P++ R+ LG+SL ++ Sbjct: 120 MIEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARD 179 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 E F+ + V + GGN SE + NL R++RDR+ +++A++ E + +A Sbjct: 180 FAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTAL 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++G LP ++ +P Y+ + ND G +LL +A A L+G +++ M+ Sbjct: 240 VLGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRMLR 292 >gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78] Length = 242 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 56 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 115 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 116 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 176 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 235 Query: 181 LMINFDV 187 + DV Sbjct: 236 RLGRIDV 242 >gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 314 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 86/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KRT +F++ P I+ + +AGL + ++++ + DP E RV Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+ + L+ PG ++ + G + + V+ IG +V+R Sbjct: 248 TQLSQVTVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIR 307 Query: 181 LMINFDV 187 DV Sbjct: 308 RFSRIDV 314 >gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 224 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 87/186 (46%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + + P+ LD IVR V G V A + + +P+RS V Sbjct: 39 LASRIQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLR 98 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 99 GGVEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 158 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y++ + NDP G LL VA L G + + Sbjct: 159 AMSSETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGGSVWLY 218 Query: 181 LMINFD 186 M Sbjct: 219 RMARLR 224 >gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 311 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ +F F L + R+V AG+ V A+A I + EF + + +G+ Sbjct: 128 MRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIGI 187 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++++ +P FFS + + + GG L E L +LSR + D +K K+++L+ Sbjct: 188 GLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLT 247 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A I+ SLP + ++YF +P L PRGH++LG M +G+ ++ L+ Sbjct: 248 AEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLLT 307 Query: 184 NFD 186 Sbjct: 308 KVR 310 >gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 308 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 89/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 NRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V+ ++ + GY+ ++ DP G +L A A + G ++ + Sbjct: 245 SAETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFMLYRL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 268 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRR 54 K +I+KR ++ F + L I S+ AG V A + DP + E Sbjct: 76 KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ +++ + + L+++ F+ V + GGNL + N + I+ D+ Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K ++ +PF + ++ T+ YM + + G +++ A + I Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255 Query: 175 GIMVMRLMINFDV 187 G V + +++ + Sbjct: 256 GYFVSKKIMDIKI 268 >gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] Length = 294 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 90/176 (51%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +F P +D ++R++R G P++D + Q + F ++ + +G +++ + Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGLMSRLFAQMHDELQVGQPVAQVM 176 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + E F + V+S+Q + GG LS+ LA L LR R+ + A +Q ++ E++ S Sbjct: 177 RQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAESRNS 236 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ++ +LP + +++ T + L+ G ++G + + +G+ ++R + Sbjct: 237 AKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIRRLTRL 292 >gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 89/161 (55%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG+ ++ A +V +S P+ EF ++ Q LG++L +S++ + R +P + + Sbjct: 1 MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + ++ GG L+EAL S +R R M+ K+ AL+ + K AW++G LP + ++ Sbjct: 61 AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P M+ L + G L V A ++G++++R ++ DV Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161 >gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184] gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184] Length = 204 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+R V Sbjct: 19 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLR 78 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + + +E +V+ + + GG L ++ +RD + + ++ Sbjct: 79 GGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 138 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S E + SA+++ LP + + V T+P Y+ + DP G LL +A ++G + + Sbjct: 139 AMSSETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVGSIWLY 198 Query: 181 LMINFD 186 M Sbjct: 199 RMARLR 204 >gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599] gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 306 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K + + ++ S+RAGL +S ++++ + + P EF R+ LG+ Sbjct: 124 RRNKYQERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGV 183 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ++S M + +P +E F+ + +Q + GGNLS+ L ++ L DR+ + +++ ++ Sbjct: 184 SFDRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMT 243 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + + ++ +P + ++ + G+++ L + +L L+ ++++ + Sbjct: 244 AEQRYVSILVPIMPVALVLMMNTMNKGFIDPLFSGFGLFLLGLFVIG-TLLSYILVKKVT 302 Query: 184 NFDV 187 N V Sbjct: 303 NIKV 306 >gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 303 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 93/181 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++R + P +D + R++ G V AV + P+R+ RV+ LG Sbjct: 121 RLQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGA 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++ + ++E+ + I + S G + E L ++ +++R ++ + ++ A++ Sbjct: 181 GFADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K +AW++ P + ++ +PGY+++++NDP G ++ A A ++G+++ M+ Sbjct: 241 GETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMM 300 Query: 184 N 184 Sbjct: 301 K 301 >gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] Length = 309 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 87/181 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I++ K L P LD +VR + G V A V + P+R +VI Q G Sbjct: 127 RIRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGK 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ +M R L E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 187 ELDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALS 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++G LP V ++ + GY+ ++ DP G +L AA + G ++ + Sbjct: 247 AETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAGAFLLYRLA 306 Query: 184 N 184 Sbjct: 307 R 307 >gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 282 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 93/184 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + K+R A P+ L + ++RAG + A+ +V ++ P+ E ++ LG+ Sbjct: 99 MRKRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGI 158 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + R +P+ + + +++ ++GGNL+EAL +++R L + M+ K++AL+ Sbjct: 159 DLDIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALT 218 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ LP + ++ F P M L ++ G + L V A +G + + Sbjct: 219 SQGRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKIT 278 Query: 184 NFDV 187 N DV Sbjct: 279 NIDV 282 >gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG] gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF] gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 314 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KR F+ P+ ++ + AGL + A+A+ + +P E V + Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ Sbjct: 188 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + E A+A+ + +L LV + G ++ + G L+ ++ +G V+R Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307 Query: 181 LMINFDV 187 + DV Sbjct: 308 RLGRIDV 314 >gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] Length = 322 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 318 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+A D++ R++RAG V A VI + P++ EF E QHLG+ ++ Sbjct: 146 LARQLPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRD 205 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R + E+ F + + + GGNL+E L NL+ +LR R + +++AL+ E + A Sbjct: 206 LARRTSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAV 265 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++ +LP + ++Y + Y VL++ P MLL LIG + +R +I+ + Sbjct: 266 VLIALPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317 >gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1] gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1] Length = 295 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 95/187 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R+ KF+ P+AL + ++++GL + ++ +V +P+ EF +V+ Sbjct: 109 LLEMKKNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYR 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++S + + + EV ++ I + +GGNL+ NL+ LR+ ++ K++ Sbjct: 169 IGTDLNDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ + + ++P V+ + + M +L + G + LG+ +G+ ++ Sbjct: 229 AMTAMGSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIK 288 Query: 181 LMINFDV 187 ++N DV Sbjct: 289 KIVNVDV 295 >gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246] Length = 330 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 3/177 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 K+L A +++ R +R G V++A VG DP+ EF R + G+ + Sbjct: 156 EKYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAF 215 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M + E+ F +++Q Q GGNLSE L L+ ++R R ++ K++AL+ E + Sbjct: 216 REMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQ 275 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + LP V ++YF + Y L+ LL + +G + +R ++NF+ Sbjct: 276 SRTLTVLPVVVFAMMYFLNRPYAEGLLAQ---WRLLLGTVTCVAVGTLWIRNIMNFE 329 >gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 322 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50] gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 308 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 78/178 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P LD +VR + G V+ A +G P+ +R G L Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SAWI+ LP ++ + + + +DP G LL A G + M Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 306 >gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 300 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 84/178 (47%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R P AL + +VR+G +S+A ++ + P+ EF + LG + Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++RM +PL E F+T + V + GGNLS +S RDR++++ + A++ ++ Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 SA+ + + + P Y+ + +P+G LL +A ++G + + ++ Sbjct: 241 LSAFGMVLGGIIAVAFLTWLEPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298 >gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 330 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 83/182 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K + + P +D +VR + G A + + P+R R G+ Sbjct: 148 RLQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGV 207 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 208 DLDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMS 267 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V T + ++P Y L ND G ML+ A L+G + + Sbjct: 268 SETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLGAAFLYRLA 327 Query: 184 NF 185 Sbjct: 328 RL 329 >gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct] Length = 295 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] Length = 272 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KK + F DFP L +I + +G ++ + + + P+ SE R + + Sbjct: 86 IKAARKKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLN 145 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + E F T+I + Q GG L + LS+I+ K + K Sbjct: 146 LGESPESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKA 205 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ E + S II +P S L+YF + + N P G ++ +IGI ++R Sbjct: 206 TMTAETRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKLIFYYIIISEIIGISLIR 265 Query: 181 LMIN 184 M+ Sbjct: 266 KMLR 269 >gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42] gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 321 Score = 140 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314 Query: 181 LMINFDV 187 M+ V Sbjct: 315 SMMKVSV 321 >gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 318 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311 Query: 181 LMINFDV 187 M+ V Sbjct: 312 SMMKVSV 318 >gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1] gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2] gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58] gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1] gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58] Length = 294 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP] gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi] gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP] Length = 295 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 75/183 (40%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++ F + FP + I+ + +G+ + A+ P+ EF + + Sbjct: 110 KMGQRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLAR 169 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G P + FF +I GG + E ++ L R + D M+ K +A Sbjct: 170 GEDAMAVFQDSYSRYPYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKA 229 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ S I+ P + F +P + ++NDP G ++L L+GI + Sbjct: 230 MTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVWW 289 Query: 182 MIN 184 ++ Sbjct: 290 LMR 292 >gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 306 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLS 64 KKR+ +F +AL +I ++R G +++ + +P+ SE +RVIE + +S Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ R+ + E +T + +Q + GGNL+ + ++ + R +K KV++ + Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + ++PF V + SPGYM+ P ++ AA IG+ ++ M Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302 Query: 185 FD 186 F Sbjct: 303 FK 304 >gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] Length = 293 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 91/179 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD +VRS+ AG + DA+ V + DP+R F LG+ L Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + ++E+ + +SV + GGN ++ L + R++ +R+ + ++ A++ E Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA+++ +P + + ++PGY+ + D G LL + L+G + M+ Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSGRFLLLASLGLQLLGCYALWRMLK 291 >gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50] gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 281 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 88/171 (51%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R + Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105] Length = 302 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 89/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +KR + L PN LD +VR G ++ + + + P++ ++ Q+ G Sbjct: 119 YRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAG 178 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L L +++ R+ R L E ++V+++ GG L L++ LRDR+ ++ A+ Sbjct: 179 LELDQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAM 238 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EA+ SA + L ++ ++ +P Y+ + ND G MLL VA + G ++ M Sbjct: 239 SSEARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRM 298 Query: 183 IN 184 + Sbjct: 299 VK 300 >gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14] gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1] gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 294 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 94/184 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + + P LD +VRS+ AG + DA+ V + +P+R F Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + SA+++ +P + + ++PGY+ + D G LL + L+G + Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288 Query: 181 LMIN 184 M+ Sbjct: 289 RMLK 292 >gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] Length = 292 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 95/174 (54%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 FL FP A+D RS++AG+PV A+ ++ D ++ +GL E++ Sbjct: 115 AFLSRFPEAVDNFTRSIQAGIPVDRALKILGEAYDDEFGRRVLKLCREMKVGLPFREALG 174 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +V FF V+++ + G LS LA+LS +LR+R+ + K++AL+ E++ASA Sbjct: 175 NFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASA 234 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP + L F +P + L+NDP G ++ G A A ML G ++++ M Sbjct: 235 RVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRMSR 288 >gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K LI++R K F +AL+ + +V+AG V +AVA + EF + Sbjct: 56 KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVKEFHYI 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + E + + +++V F+ V + GG+++ + +R+L D+ ++ Sbjct: 116 ETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKIDV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ KA I+ +P + + TSPG+++VL + G + + ++ Sbjct: 176 RKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGNLFGMCAMTLCLGIYVLS 235 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 236 YWLGRRIVDIEV 247 >gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] Length = 308 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 96/184 (52%), Gaps = 1/184 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K T + + A ++ + ++G+ ++ + V+ + + P R EF+ + + LGL Sbjct: 126 RKNKYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGL 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ M + + +E F + + +Q + GGNL++ L +++ L +RK ++ ++ + Sbjct: 186 DFERALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTAT 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++I+ ++P + ++ G+++++ P G +L+ + M + ++++R + Sbjct: 246 AEQRFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVT 304 Query: 184 NFDV 187 N V Sbjct: 305 NIKV 308 >gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] Length = 285 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 78/180 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K D + +D + R+ + G ++ + ++ P+ E + +G+S Sbjct: 101 RSRRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVS 160 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++ S + V + GG+L + L L+R +RDR +++ + Sbjct: 161 MKAALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATA 220 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++A+A ++ LP + P Y+ L+ G A A +IG + + ++ Sbjct: 221 GSRATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVLK 280 >gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 247 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K LI++R F +AL+ + +V+AG V +AV + EF + Sbjct: 56 KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYM 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + E + ++++ F+ V + GG+++ + SR+L D+ ++ Sbjct: 116 ETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ KA I+ +P + + TSPG++ VL +P G + + + + Sbjct: 176 RREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYGLS 235 Query: 176 IMVMRLMINFDV 187 + R +++ +V Sbjct: 236 YWLGRRIVDIEV 247 >gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 290 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 81/177 (45%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 F D FP L ++ +V AG + A+ + F R+ +LG Sbjct: 111 HRRYFEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPER 170 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + +E FF V+ V Q GG L + LSRI+ + KNM + A++ EA+ Sbjct: 171 VFNDAWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEAR 230 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SA I+ SLP + + SP + +++DP G ++L A IG++++ +++ Sbjct: 231 TSAKIVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILLR 287 >gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7] gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7] Length = 282 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K R +F + P+ L + ++RAG + A+ IV QS P+ EF ++ Q Sbjct: 96 IGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ + R MP + + +++ +Q GGNL+E L +++ LR R + ++VQ Sbjct: 156 MGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQ 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + AWI+ LP ++ ++++ P M L P G ++ ++GI +R Sbjct: 216 ALTSQGRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIR 275 Query: 181 LMINFDV 187 ++ + Sbjct: 276 RIVAITI 282 >gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 308 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 82/183 (44%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ AKF P I+ S AGL + A+ V + DP EF + +G Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ RM + +++ + + + + GG+L +L N+S L RK K +V+ L Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + +++ + L+ + G + L + G + + +A IG++ + ++ Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304 Query: 184 NFD 186 Sbjct: 305 KVK 307 >gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K A+ L P+ LD +VR G + A V Q+S P+R + G Sbjct: 135 RRTSKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++ + + + S VI V ++GG + L + +RD + + ++ A Sbjct: 195 MDLDRALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ + Sbjct: 255 TSETRMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 314 Query: 183 IN 184 Sbjct: 315 AK 316 >gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C] gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C] Length = 312 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +RT +F++ P I+ + +AGL + A+ + + P E RV + Sbjct: 126 LNWQRARRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ E++ +V +P +E+ + + + ++ GG + +L NL+ L RK + +++ Sbjct: 186 VGHSIEEALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ ++ LV PG ++ + G + +A +G +++R Sbjct: 246 TQLSQVTVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSKIDV 312 >gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 287 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] Length = 281 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 89/185 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + KR P L + +++G+ + +AV + + P+ E +I L Sbjct: 95 RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ R +P+ ++ +++ + GG S+ L L+ L ++ ++ + QA Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS + + AW++ +P + L+ + P + L N G + LGVA LIG M+++ Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274 Query: 182 MINFD 186 ++N D Sbjct: 275 ILNTD 279 >gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] Length = 335 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 6 KKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++R + + P+AL + AGL V A A + ++ P+R F V LG Sbjct: 150 RRRDAELQRMRELVPDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELG 209 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+ E++ R R L E+SF + + VQ GG+ S + + + ++ ++ Sbjct: 210 RSVDEALERFRRASSLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQ 269 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +AK SA ++ +P + ++ PG+M+ G LL AAA + GI ++ + Sbjct: 270 TAQAKLSAQVVSIMPIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRV 329 Query: 183 INFDV 187 ++ D+ Sbjct: 330 LDVDI 334 >gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822] gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis] Length = 306 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 76/176 (43%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + P LD +VR + G V+ A +G P+ +R G L + Sbjct: 129 RRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLDAA 188 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E + Sbjct: 189 LHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEVRL 248 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SAWI+ LP ++ + + + +DP G LL A G + M Sbjct: 249 SAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304 >gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] Length = 318 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + A+ L P+ LD +VR G + A V Q+S P+R + G Sbjct: 135 RRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++S + + + S VI V ++GG + L + +RD + + ++ A Sbjct: 195 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SAW++G LP + L+ SP + ++++P GH +L +A L+G ++ + Sbjct: 255 TSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLLYRL 314 Query: 183 IN 184 Sbjct: 315 AK 316 >gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I] gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS] Length = 306 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 76/176 (43%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + P LD +VR + G V+ A +G P+ +R G L + Sbjct: 129 RRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLDAA 188 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E + Sbjct: 189 LHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEVRL 248 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SAWI+ LP ++ + + + +DP G LL A G + M Sbjct: 249 SAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304 >gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] Length = 311 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 77/178 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P LD +VR G + A V + +P+R R G+ L Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R LQE+ + VI V + GG L ++ +RDR+ + ++ ALS E Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SAWI+G LP + + + ++ DP G LL A IG + + Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIGAYWLYRLAK 309 >gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 313 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K A+ L P+ LD +VR G + A V Q+S P+R + G Sbjct: 130 RRTTKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 189 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++S + + + S VI V ++GG + L + +RD + + ++ A Sbjct: 190 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 249 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ + Sbjct: 250 TSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 309 Query: 183 IN 184 Sbjct: 310 AK 311 >gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 287 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 306 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 90/186 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I KR L I S+R+G+ ++ A+A +G+ + + E +R+ Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + +P+ E + QLGGNL+E N+ + +R + ++ Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +AK A + G +PF V ++ SP Y+ +++ P G M+L ++ + +G + Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLGWFTIN 298 Query: 181 LMINFD 186 + Sbjct: 299 KLSTIK 304 >gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 308 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 302 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 2/184 (1%) Query: 3 HLIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++KR +F L +I R+V AGL V A++ + + EF R+ + Sbjct: 114 FVVRKRQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLA 173 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ +P + +F+ + + GG L + L +LSR L D + M+ KV+ Sbjct: 174 LGHGMKHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVK 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +L+ E + +A + LP + +V + +P VLI G +L A ++IG + ++ Sbjct: 234 SLTAEPRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQ 293 Query: 181 LMIN 184 LM Sbjct: 294 LMTR 297 >gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1] Length = 312 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 85/187 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R +F++ P I+ + +AGL + A+ + + P E RV + Sbjct: 126 LNWQRSRRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLA 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+ ES+ + +P +E+ + + + ++ GG + +L NL+ L RK + +++ Sbjct: 186 IGHSIEESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +A+++ + LV PG ++ + G + VA +G +++R Sbjct: 246 TQLSQVTVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIR 305 Query: 181 LMINFDV 187 + DV Sbjct: 306 RLSKIDV 312 >gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 84/182 (46%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K + + P +D +VR + G A + + + P+R R G+ Sbjct: 59 RLQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGV 118 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 119 DLDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMS 178 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V T + +P Y + ND G ML+ +A L+G + + Sbjct: 179 AETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLGAFFLYRLA 238 Query: 184 NF 185 Sbjct: 239 RL 240 >gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] Length = 245 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 L KKR + +F + ++ + AG V +A + V + V EF + Sbjct: 54 SELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHI 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + S+ +++S L +V F+ V + + GG L +++ + ++RD+ + Sbjct: 114 VSQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ + I+ +PF + + TSPG+ N++ N G +L+ + A + Sbjct: 174 RQEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGA 233 Query: 176 IMVMRLMINFDV 187 I + R ++ ++ Sbjct: 234 IAIARHIMKIEI 245 >gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 84/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 308 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +K + L P LD +VR + G V A + P+R+ + + Q G Sbjct: 125 NRTRKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + R + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +++ + Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 318 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 2/178 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 F ++ ++RAG+ + A+ + + +P RSEFR+ LG +L ++ Sbjct: 143 RAFNKQLVEVTQLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLAL 202 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + +++ I VQ Q GGNL L ++ L +R+ ++ ++ +L+ EA+ S Sbjct: 203 HDMRRRVCSRDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFS 262 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A ++ LP ++ T G L G +LLGV A + +++ + +V Sbjct: 263 ALVVMVLPIFFLLMIRDTPLG--EALFQTVIGWVLLGVFAVVQVAVYFLIQRVARIEV 318 >gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 308 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLILARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 302 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 88/181 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 K++ +F L +I R+V AGL V A++ + + EF R+ + LG Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGH 176 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++ +P + +F+ + + GG L E L +LSR L D + M+ KV++L+ Sbjct: 177 GMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLT 236 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +A + LP + +V + +P +LI G +L A +++G + +++M Sbjct: 237 SEPRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVMT 296 Query: 184 N 184 Sbjct: 297 K 297 >gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5] Length = 260 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K ++ + F +AL + +V+AG +AV V + EFR + Sbjct: 69 KKCTARQQRELNYQFRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYI 128 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L + + E + + ++++ F+ V + GG++++ + ++R+L D+ + Sbjct: 129 ESQLRLSVPVEELFLDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEV 188 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A K+ ++ +P + + TSPG+++VL +P G + V + Sbjct: 189 KKEIEATLAAKKSEQMVMSIMPAGIICYLKLTSPGFLDVLYGNPFGICAMTVCMVIYGLS 248 Query: 176 IMVMRLMINFDV 187 + +++ +V Sbjct: 249 YWLGVKIVDIEV 260 >gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 307 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 75/181 (41%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + D P LD +VR + G ++ A +S+P+R + Sbjct: 125 RADRRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQ 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + R +E+ + V+ V + GG L ++ +RD + ++ A S Sbjct: 185 ELDAALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAAS 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAW++ +P ++ + T+ + +DP G +L A L G + M Sbjct: 245 AEIRLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAGSYWLYRMT 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] Length = 257 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 80/191 (41%), Gaps = 6/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +++ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 176 IMVMRLMINFD 186 + +++ + Sbjct: 246 CFLSFKILDIE 256 >gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] Length = 247 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 87/192 (45%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 + I+++ + F + LD + +++AG V +A+++ + + E R + Sbjct: 56 QQKIREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTRELREM 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L + + + ++V F+ V + GG++ + L +++L D+ + Sbjct: 116 EDKLKLSVPVERLFMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGDKIEV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++A+ K+ ++ +PF + + TSPG++ VL + G ++ A L Sbjct: 176 KKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGNLFGVAVMTGCLAVYLFA 235 Query: 176 IMVMRLMINFDV 187 + +++ +V Sbjct: 236 WWLGNRIVDIEV 247 >gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] Length = 257 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 80/191 (41%), Gaps = 6/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +++ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 176 IMVMRLMINFD 186 + +++ + Sbjct: 246 CFLAFKILDIE 256 >gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 278 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFR 53 ++ LI KR A+ F +AL + S+ G + A + D + EF Sbjct: 85 VQDLITKRKAELQLQFKDALYSLTSSLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFG 144 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + L + ++ L+++ F+ V+ + + GGNL + + N S IL D+ Sbjct: 145 YICRKIELNEPVETALLDFAERSGLEDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKI 204 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + +++ L + K I+ +P LV F GYM+ L +G++L+ +A ++ Sbjct: 205 EISQEIELLLTKQKYEQKILNIMPIVFIGLVKFGGSGYMDSLYTSIKGYLLMALALGILI 264 Query: 174 IGIMVMRLMINFDV 187 +V + + + V Sbjct: 265 AASVVSKKIFDIKV 278 >gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] Length = 332 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 84/185 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H + + + P+AL + +AGL + A ++ P+ F +V L Sbjct: 146 SHAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIEL 205 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ E++ R L E++F + + VQ GG+ + L + ++ ++ Sbjct: 206 GHSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRV 265 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +AK SA I+ ++P + ++ SP + N G LL +AA+ + GI+++R Sbjct: 266 QTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILIVRR 325 Query: 182 MINFD 186 M+ D Sbjct: 326 MLAVD 330 >gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] Length = 304 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 83/191 (43%), Gaps = 8/191 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRRVI 56 L+++R + F AL + S+ AG V +A + DP + EF ++ Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + I L++++ F+ V + GGNL E + S ++ ++ + Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + + K + I+ + P + ++ F+SP YM L G +++ + + + + Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYE-GAGRLIMTIGLTVLFLCL 293 Query: 177 MVMRLMINFDV 187 + + +++ V Sbjct: 294 WITKKIMDIKV 304 >gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 294 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 96/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + Q + F + + L Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R Sbjct: 229 ITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288 Query: 182 MINFD 186 + F Sbjct: 289 LTKFK 293 >gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N] gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N] Length = 282 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 84/169 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L + ++RAG + A+ + + P+ E ++ Q LG+S +++ R+ Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L V + V GGNL++ L +++ LR + + +++AL+ + + AW++ Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +LP ++ ++Y P M L G +L+ + A ++G ++R ++ Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIRRIL 278 >gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 313 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 85/186 (45%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I R + + P LD +VR+ R G + A+ + PVR F +++ Q Sbjct: 128 IRYRIGLRRSAAILALPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQ 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ + + +QE++ +TV+ + + GG L ++ LR R +A+ Sbjct: 188 SGTPIDQAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFN 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + A I+ + ++ + + Y+ + G MLL ++ G++++ Sbjct: 248 ALSAETRLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLN 307 Query: 181 LMINFD 186 M Sbjct: 308 RMAKLR 313 >gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 287 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 8/193 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRR 54 L+ +R + F AL + S+ AG V +A + DP + EFR Sbjct: 96 SFLLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRI 155 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G L +++ + + L +++ FS V +V + GG+L E + S+ + ++ Sbjct: 156 VKYRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLE 215 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L + + A I+ ++PF + +P YM L G++LL + + Sbjct: 216 VKQEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYG-GGGYVLLTIGLVVLSF 274 Query: 175 GIMVMRLMINFDV 187 ++ ++ V Sbjct: 275 CFWLIHRIMQIRV 287 >gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N] gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N] Length = 305 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 78/177 (44%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P+ +D +VR + G V+ A + DP+ +R G L Sbjct: 127 RRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLDS 186 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ R LQE+ S+VIS+ + GG L ++ +RD + + ++ ALS E + Sbjct: 187 ALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEVR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S WI+ LP + + + + DP G +L A ++G ++ M Sbjct: 247 MSVWILSLLPIGLGLFIIVFNNDLFMGMWRDPLGFKMLIGGAMLQVVGTYLLFRMAR 303 >gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] Length = 305 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 1/186 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR + LD + AG + A+ + +S DP++S +V Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 SLSE+ + + +P+ E S ISV S++ N+S +++ ++ + Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E+K +++IIG +P + ++ P Y+ + P G + +A L G+ ++ Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291 Query: 180 RLMINF 185 R + N Sbjct: 292 RRISNV 297 >gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 307 Score = 131 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 94/186 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RTAKF++ P ++ + AGL + A+A++ + +P RSEF +V Sbjct: 121 VRRSQQRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLR 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + ++ +EV+ + + V ++ GG+L AL ++ L +RK + +V Sbjct: 181 FGASLQTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVT 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ A+A++I + + + PG + ++ + G + L + +G +V+R Sbjct: 241 TILSQSLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIR 300 Query: 181 LMINFD 186 M Sbjct: 301 QMTKVK 306 >gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 294 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 96/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + Q + F + + L Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R Sbjct: 229 ITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288 Query: 182 MINFD 186 + F Sbjct: 289 LTKFK 293 >gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 269 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI ++ + L +F A+ I+ + AG + ++V + + + + EF + Sbjct: 78 KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +A+ ++ D+ + Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ LP + + F+SPG+ N++ G M + V L Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 258 IYISKRLLNIEV 269 >gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 88/185 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + ++R + P +D ++R+V AG + A+ S P+ +V Sbjct: 120 LYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIK 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ++S +R L+E+ + I V + G ++ E L +L +++ + + + + Sbjct: 180 LGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFR 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E++ +AW++G +P + + T+P Y L +DP G +L +A G++ + Sbjct: 240 ALTGESRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLALW 299 Query: 181 LMINF 185 + Sbjct: 300 RLTRV 304 >gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804] gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii] Length = 281 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 101/176 (57%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL + ++RAG+ VS A+ IV S P+ EF ++ Q LG+S +++R Sbjct: 106 FEQQLPGALLALASALRAGVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +P + + + + V + GGNL+E L ++R LR+R ++ KV+AL+ + + AW Sbjct: 166 LSQRVPSEASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP ++ ++ P M +L + P G +L V A G++++R +++ D+ Sbjct: 226 IVGALPLLLAAVLDRMEPDAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281 >gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp. BTAi1] gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium sp. BTAi1] Length = 329 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 103/184 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K+ F+D FP+A+D + R +RAGLP++ A+ + S PV F + + Sbjct: 141 LSREQKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELR 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E++ R + L + FF+ +++Q GGNL+ L +LS I+R R+ + K + Sbjct: 201 IGVPLEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAK 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E + +A+ +G++P + + P Y+ L DPRGH++L +A A +L+ + MR Sbjct: 261 AATGEIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHLILVLAGALLLLSFLTMR 320 Query: 181 LMIN 184 M+ Sbjct: 321 KMMR 324 >gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 294 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 96/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + Q + F + + L Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ + + MP QE F +T++S+QS+ GG LS L L + LR+R M+++V+ Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++++R Sbjct: 229 ITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288 Query: 182 MINFD 186 + F Sbjct: 289 LTKFK 293 >gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787] gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787] Length = 220 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K I+KR F F A+ + ++ G V +A+ + + + EFR + Sbjct: 29 KQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREALKDLQIIYKKDELIVREFRYM 88 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + +++ + + + ++V F TV + + GG++ + N + + ++ ++ Sbjct: 89 VRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSGGDMIAIIRNTVQQMSEKADI 148 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ + K ++ ++PF + + F+ P +M VL + G +++ + +I Sbjct: 149 RREIGTIIASKKLEFKVMSAIPFGMICYMKFSFPEFMGVLYGNAAGVVIMTICFLGYVIA 208 Query: 176 IMVMRLMINFDV 187 + + ++ +V Sbjct: 209 YEIGKRIVEIEV 220 >gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 88/182 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K++ +F L +I R+V AGL V A++ + + EF R+ + LG Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALG 175 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ +P + +F+ + + GG L E L +LSR L + + M+ KV++L Sbjct: 176 HGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSL 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A + LP + TLV + +P +LI G +L A +L+G + + LM Sbjct: 236 TSEPRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295 Query: 183 IN 184 Sbjct: 296 TK 297 >gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 297 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 92/185 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R ++ P +D + + G ++ A+ + + VRS V Sbjct: 111 VRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLE 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++ Sbjct: 171 LGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A EAK S ++ +P ++ +P Y++ + DPRGH L VA +G++VMR Sbjct: 231 AAISEAKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290 Query: 181 LMINF 185 ++ Sbjct: 291 RVMRL 295 >gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] Length = 308 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 86/191 (45%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56 L ++R + +F + + ++ + AG + +AVA + + EF + Sbjct: 118 DLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEMA 177 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L ++ + L++V+ F+ V + + GG+L E +++ + ++RD+ ++ Sbjct: 178 RGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQVQ 237 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ ++ I+ +P + + TSPG+ +++ G +++ A I + Sbjct: 238 EEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGISL 297 Query: 177 MVMRLMINFDV 187 ++ R ++ ++ Sbjct: 298 LLARRILQVEI 308 >gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] Length = 233 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 83/182 (45%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +HL K+R K P L + +R+G V A+ + G P+ E ++ + + Sbjct: 46 RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L++ + R +P+ + + + + GG S+ L+ L+ ++++K + Sbjct: 106 GKPLTDCLEDWQRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQIT 165 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ +A+ A I+ +P + L+ + + + G +L VA M+IG +++ Sbjct: 166 LTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGGWMVKR 225 Query: 182 MI 183 ++ Sbjct: 226 IM 227 >gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 292 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 2/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + + KK F + + AL + S+RAG+ + AV + ++ EFR++ Sbjct: 101 VSYTEKKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSD 160 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG S+SE+ M +P +V + I +QS +GG+ +E++ ++ + R ++ + Sbjct: 161 IQLGFSISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKE 220 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ L K + + LP + +Y++SP Y L + G ++ +A M+IG + Sbjct: 221 IKTLFASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYI 280 Query: 179 MRLMIN 184 R +N Sbjct: 281 DRKFLN 286 >gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 306 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 91/186 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R F+ P ++ + AGL ++ A+A+ + P E RV Sbjct: 120 LSRAQQRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMR 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I + +P +EV+ ++ + V ++ GG+L AL +++ L +RK ++ +V+ Sbjct: 180 FGEDLDTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVR 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + ++ ++ +++ + F + L+ PG + + D G L V ++ + G +++R Sbjct: 240 TVLAQSTSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIR 299 Query: 181 LMINFD 186 M FD Sbjct: 300 RMTRFD 305 >gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] Length = 301 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K R A+F + +L ++ ++RAG + A+ + S DP++SE Sbjct: 114 VRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQ 173 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + ++ M + +++ ++ ++GG+L+++L + + R +++ ++ Sbjct: 174 IDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIE 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + AS + + + ++ P + DP G +L V F G +++ Sbjct: 234 SETSSVIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIY 293 Query: 181 LMINFDV 187 M + DV Sbjct: 294 KMADIDV 300 >gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] Length = 291 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 77/178 (43%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + AKF F ++ + + GL + ++ + ++ + +++ +G Sbjct: 107 DLAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEHADPYIKKQSSLLLQRMSMG 166 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + ++ + V F+ I +Q +L++ L ++ ++ R + +++A Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 K +A G LP+ + L +T P + L+NDP G + VA L G + +R Sbjct: 227 LSGTKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLWLR 284 >gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 +L K+R + F + ++ + AG + + + + + + + + EFR + Sbjct: 54 SNLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRIL 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + E R +++V F+ V+S + GG L E + + I+RD+ + Sbjct: 114 SDGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ + I+ +PF + + TSPG+ +V+ G ++ + A Sbjct: 174 KEEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGA 233 Query: 176 IMVMRLMINFDV 187 +++ +++ +V Sbjct: 234 LVLAGKILDIEV 245 >gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 292 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 91/174 (52%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + P+ ++ + R ++ GL ++ AV ++ P++ +RVI + +G+ L ++ Sbjct: 115 KLQLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDA 174 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++ S+ ++ GG+++++L +L ++LR + + ++++++ E + Sbjct: 175 FEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRI 234 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +AW+IGS P VS + +P + + G L + + L+GI+++ M Sbjct: 235 TAWVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288 >gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 245 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 78/191 (40%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56 L +R + +F + I+ + AG V +A + + + S + EF + Sbjct: 55 DLKDQRLKRLNLEFKEGILILSSFLSAGYSVENAFSASIRELAVMYGASGMMVLEFSHME 114 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + + + L +V F+ V + + GG L + + S ++RD+ ++ Sbjct: 115 GQIRMNRPVEQVLMEFGDRSGLDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQ 174 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ ++ + I+ +PF + V +SPG+ +++ G ++ A Sbjct: 175 EEIATMTAAKQFEQKIMNLIPFFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAY 234 Query: 177 MVMRLMINFDV 187 ++ ++ +V Sbjct: 235 VLAGRILRIEV 245 >gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 270 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRV 55 +L+++R F AL + S+ AG V + + + V E + Sbjct: 80 YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G + E++ R ++++ F+ V + + GG+L E + S ++ ++ + Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + + A + + P + FTSP YM L + G ++ GVA I Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258 Query: 176 IMVMRLMINFDV 187 +M +I+ V Sbjct: 259 AWLMLKIIDIRV 270 >gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] Length = 248 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K I+ R + F +AL+ + + AG + + + + EF + Sbjct: 57 KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L E + + ++++ F+ V+ ++GGN+ L + +R + Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A+ K I+ +P + + TSP +++VL +P G ++ Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNPVGICVMTACLLLYTAA 236 Query: 176 IMVMRLMINFDV 187 + DV Sbjct: 237 FQWGVRLTQIDV 248 >gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268] gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIE 57 L KKR + F L I+ + AG + +A+ + + + E +++ Sbjct: 35 LRKKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKR 94 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L E++S+ + ++ FS + V + GG+L + + S I+RD+ + Sbjct: 95 SLSMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITE 154 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ L+ + I+ +PF + + +SP + +L + G ++ L+ I Sbjct: 155 EIITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIY 214 Query: 178 VMRLMINFDV 187 + + +I V Sbjct: 215 LSQKIIAIPV 224 >gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 319 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 137 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 196 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 197 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 257 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 316 Query: 184 N 184 Sbjct: 317 K 317 >gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I] gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS] Length = 281 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822] gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis] Length = 281 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ P M L + G L + GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] Length = 308 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 126 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 186 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 245 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 246 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 305 Query: 184 N 184 Sbjct: 306 K 306 >gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 289 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 93/182 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++AK +A+D+++ ++ AG V+ A+A + +SS P++ + ++ LG Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +PL+ FS+ ++V ++GG+L+ LA+ R +RDR + ++Q+ Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +++ S I L + ++ +V+ SP M +N G ++ + +GI+ M + Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWMSAI 284 Query: 183 IN 184 Sbjct: 285 SK 286 >gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 318 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + P LD +VR + G V A + P+R+ + Q G Sbjct: 136 RTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 196 DLDAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ + Sbjct: 256 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARLA 315 Query: 184 N 184 Sbjct: 316 K 316 >gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 300 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 75/180 (41%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K++ F + FP L I +G+ V++ + + + E + +G Sbjct: 116 YYKKQKKIYFTETFPELLLIFNMGSVSGISVNEILKKAGQEIKGGLGKECDLIFRRLSIG 175 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ + E F ++ + GG L E + L++++ + M+ + A+ Sbjct: 176 ENINTVFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAM 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + S W++ +P YF +P + + G +++ A +GI +MR M Sbjct: 236 TGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMRYM 295 >gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] Length = 205 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +KR +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIAYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] Length = 227 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI + K + +F A+ II + AG + +++ + + + + EF + Sbjct: 36 KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +++ ++ D+ + Sbjct: 96 NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ P + + +SPG+ N++ G + + L Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 216 IYISKGLLNIEV 227 >gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 264 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRR 54 K +I+KR + F + L + S+ AG + + ++ S + E Sbjct: 72 KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ ++ L+++ F V+ + GGN+ + + N S I+ D+ Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K I+ +P + + ++ YM + +D RG +++ ++ A ++I Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251 Query: 175 GIMVMRLMINFDV 187 + + ++N V Sbjct: 252 AYFISKKIMNIKV 264 >gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264] Length = 301 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 71/151 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KR + + P+ LD IVR V G V A + + P+R V Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ + ++E +V+ + + GG L ++ +RD + + ++ Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 A+S E + SAW++G+LP + + V T+P Y Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKY 301 >gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] Length = 299 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 84/173 (48%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P L ++ +RAG + AV +V Q+ P+R EF RV L + +++ + Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + L E + V + GG+L L ++SR L + + ++A E KASA ++ Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASARLV 244 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ++P V LV + +P Y + DP G +LL + M +G +++R + + Sbjct: 245 TAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITDVR 297 >gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] Length = 197 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ + K+ +F F +++ I+ +++AG +A+ + E+ Sbjct: 5 LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I + + + + +S + ++V F TV + + GG+ + + +++ ++ Sbjct: 65 MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ +PF + + T ++ VL +P G +++ + A Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184 Query: 175 GIMVMRLMINFDV 187 + + MI +V Sbjct: 185 AYIWGKKMIKIEV 197 >gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] Length = 165 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 70/161 (43%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + +G ++ + + + +EF + +LG + + R E Sbjct: 1 MNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFH 60 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 FF++VI + + GG LS+ + + + + + +K + ++ + + + ++ +P + Sbjct: 61 FFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTA 120 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +Y+ P + L + G ++ ++GI ++R MI Sbjct: 121 FLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 161 >gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] Length = 249 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 57 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTICLIVYIA 236 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 237 AYSFGRKIIHIEV 249 >gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 308 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 83/182 (45%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +K + L P LD +VR + G V A + P+R+ + + Q G Sbjct: 125 NRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +++ + Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304 Query: 183 IN 184 Sbjct: 305 AK 306 >gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC 27755] gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC 27755] Length = 230 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 76/193 (39%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRR 54 + IK++ +FL F + + G V +AV + + + E Sbjct: 38 LDECIKRKEQEFLVQFKELIQTFSSLLNTGYSVENAVKESLKEMQIFYSDDAAILRELEI 97 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + +++ + L +V F+ V + GGNL + N + + D+ + Sbjct: 98 MVRQIRVQVPVEQAVEELSERTKLPDVESFAGVFVTAKRSGGNLMSIIRNTADQIGDKID 157 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + K ++ +PF + + + P +M L + G ++ L Sbjct: 158 VKREIDTMLAAKKYEFQVMSVIPFGIVLYMTVSFPEFMGNLYGNIAGRGVMTGCLIIYLG 217 Query: 175 GIMVMRLMINFDV 187 + R +I +V Sbjct: 218 AYGLGRKIIEIEV 230 >gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] Length = 205 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + +R EFR+ Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM 15053] gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM 15053] Length = 251 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 83/192 (43%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K ++++++ F F +A+ + ++ G V +A + +D +R E + Sbjct: 60 KECLRRKSSSFQLQFKDAIQSLSSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHII 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + + + ++V F+ V + + GG++ + N + + D+ + Sbjct: 120 VSQIRVNVPMEQIMEEFAERVRQEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQIGDKVEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ + + ++ ++P+ + + + P +M L + G ++ V A + Sbjct: 180 KREIDTILASREYEFKVMSAVPYVIIGYMSLSFPEFMQNLYGNVLGTGVMTVCLAAYIGA 239 Query: 176 IMVMRLMINFDV 187 + + +I +V Sbjct: 240 CCLGQKIIRIEV 251 >gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium 6_1_63FAA] Length = 248 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 72/192 (37%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K I+ R + F +AL+ + + AG + + + + EF + Sbjct: 57 KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L E + + ++++ F+ V+ ++GGN+ L + +R + Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A+ K I+ +P + + TSP +++VL + G ++ Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNSVGICVMTACLLLYTAA 236 Query: 176 IMVMRLMINFDV 187 + DV Sbjct: 237 FQWGVRLTQIDV 248 >gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 73/181 (40%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR + + P LD IVR + G + A + +P+R Sbjct: 125 RADKRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAK 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ ++ R L+E+ + V+S+ + GG + L ++ +RD + ++ A S Sbjct: 185 ELDAALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASS 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+ LP ++ + + L DP G +L A + G + M Sbjct: 245 AEVRLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKMLLTAVVLQIGGCYWLYRMA 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 245 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 83/189 (43%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58 +KKR + F + + ++ AG V +A + + + EFR ++ Sbjct: 57 MKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALRELRQLYEEDAMIVREFRYIVVQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + SL + ++ + ++++ F+ + S + GGNL + N + + ++ + + Sbjct: 117 LGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQKEETRRE 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + I+ +P + V SPG+++V+ ++P G +++ + + + Sbjct: 177 INTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLVYFLAWLW 236 Query: 179 MRLMINFDV 187 R +++ +V Sbjct: 237 GRKIVSIEV 245 >gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] Length = 270 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57 L ++ D AL + S++AG + A+ + S + E Sbjct: 81 LARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAR 140 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + E++ + +PL+E++ + + GGN+ E + N+++++ DR ++ Sbjct: 141 EVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVER 200 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++Q L+ + + A I+ +P + +V T+P Y+ V G LG+ + G Sbjct: 201 EIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGLILLAVAGGYW 260 Query: 178 VMRLMINFDV 187 + + + + D+ Sbjct: 261 MAQRIASIDM 270 >gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 306 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 69/168 (41%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL I SVR+ L + A+ DP+R E RV+ G +L+ + RM R Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTDS 194 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +V + + +Q + GG ++ L ++ R +++ + + W + Sbjct: 195 PDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVALAMP 254 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +++ T+ + P G ++LGVA G+ + + D Sbjct: 255 AIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302 >gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 283 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 1/158 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++RAG V AV V + P++ E ++ LG SL E++ R P E Sbjct: 116 VMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPET 175 Query: 82 SFFSTVISVQSQLGGNLS-EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + +++ ++GG +AL +++ +R+R +K +V+A + + SA ++G++P Sbjct: 176 RLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLWC 235 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++F +PG++ L+ P G V A +++G ++ Sbjct: 236 LGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273 >gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 297 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 91/185 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R ++ P +D + + G ++ A+ + + V V Sbjct: 111 VRRRAQVRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPGVVWGFIAPVARRLE 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++ Sbjct: 171 LGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A EA+ S ++ +P L+ +PGY++ + DPRGH L VA A +G++VMR Sbjct: 231 AAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVMR 290 Query: 181 LMINF 185 ++ Sbjct: 291 RVMRL 295 >gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] Length = 321 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 91/182 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H I++R + P+A+ I + AGL + + +S P++ F RV + Sbjct: 135 SHAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAA 194 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E+++ + ++E++F +T + +Q Q GG++ + L +L N++ + Sbjct: 195 GSPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAV 254 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + +A+ SA ++ ++ ++ ++ S G++ + G ++L VA + + GIM +R Sbjct: 255 NTAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRK 314 Query: 182 MI 183 ++ Sbjct: 315 IL 316 >gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] Length = 247 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K +I+KR + F + L + S+ AG P+ A + + E + Sbjct: 55 KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETKI 114 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I L +S+ E++S + ++ FS VI + + GGNL +A+ N SRI+ ++ Sbjct: 115 IINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISEKIE 174 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 M +++ L K ++ +P + ++ T+ Y+N + G + + + Sbjct: 175 MAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGRIAATLCLILLTA 234 Query: 175 GIMVMRLMINFDV 187 + + +IN + Sbjct: 235 AYFISKRIINIKM 247 >gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 306 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K L+ P+ LD++ SV AGL A+A ++ + P+ EF V++ Sbjct: 149 LNKQIAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ M + L +++ F I QLG ++ L S +R+++ +AK + Sbjct: 209 VGKQKRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEK 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ K + +V F P +VLI ++ Sbjct: 269 AMKAPVKM-----------LIPMVLFIFPTIFSVLIGPVIIKVI 301 >gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 302 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 87/177 (49%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + ++D P +D + + + G + A+A + SS V + I LG L E++ Sbjct: 125 EQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEAL 184 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++ + L E+S ++ I V + GG L+ L+N++ ++R+R + ++ A + E + S Sbjct: 185 QQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRVS 244 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ +P ++ ++ Y++ ++ RG L VA A LIG M + D Sbjct: 245 AKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301 >gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa] Length = 194 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 59/106 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L KR + P+A+D+I R++RAG + A+ ++ + P+ EFR E + G Sbjct: 72 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 131 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + + Sbjct: 132 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTM 177 >gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 283 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 81/173 (46%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + S+++G+ + A + +V P+ EF + E G + ++ Sbjct: 111 QTADVMTALSASIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADE 170 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + +S I + + GG L+ + L+ R+ + ++ +V+ + + SA I+ Sbjct: 171 RLQVPRLSLIFQTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMF 230 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +PF + L+Y P + +L ++ G+++L +A A + +M+ +I D+ Sbjct: 231 LMPFFICGLLYLIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283 >gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 326 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 11/168 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ +D++ +V AGL + AV + + PV +EFR+ ++ Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S E++ + L E+ F+ + +LG +L+ L + LR ++ +A+ Q Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 A+ K + LV F P VL+ +L A Sbjct: 289 AMKTPIKM-----------LLPLVLFIFPTLFIVLLGPALIQILSAFA 325 >gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4 [Achromobacter xylosoxidans A8] gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4 [Achromobacter xylosoxidans A8] Length = 307 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KR + + P LD IVR + G + A + +P+R Sbjct: 126 RADKRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLREVVETASSLSRS-K 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++++ R L+E+ + V+S+ + GG + L ++ +RD + ++ A S Sbjct: 185 ELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASS 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + SAWI+ LP ++ + + L DP+G +L A + G + M Sbjct: 245 AEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGGCYWLYRMA 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 256 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57 L K+R K L +F AL ++ + AG + +A + + S + EF+++ E Sbjct: 67 LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISE 126 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + + + L E+ FS + SV + GG L + S ++ D+ + Sbjct: 127 GLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGISE 186 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ LS + I+ +PF + + +SP ++ +L G +L+ L+ + Sbjct: 187 EILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAVR 246 Query: 178 VMRLMINFDV 187 + +++ +V Sbjct: 247 LSERILDIEV 256 >gi|167760286|ref|ZP_02432413.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704] gi|167662169|gb|EDS06299.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704] Length = 238 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 75/189 (39%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58 +K+ +FL F A+ + ++ G V +A+ + + EF + Sbjct: 50 ARKKDQEFLLQFKEAIQAMASALNTGYSVENALLEAQKELRLLYPEDARISREFLVMARQ 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L + + + + ++V F V + + GG++ + N + + D+ ++K + Sbjct: 110 LRLHVPMEQILEEFAGRSGQEDVENFVAVFAAARKSGGDMISIIRNTANQIGDKIDVKRE 169 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + K ++ ++P+ + + + P +M+ L + G ++ L + Sbjct: 170 IDTVLAAKKYEFRVMAAIPYAIIGYMSLSFPEFMDSLYGNIMGIGVMSACLTMYLGAYYL 229 Query: 179 MRLMINFDV 187 +I +V Sbjct: 230 GARIIRIEV 238 >gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] Length = 224 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 76/191 (39%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVI 56 + +++ +F + F ++ + ++ G V +AV +R EF R+I Sbjct: 34 RVCREKEQEFREQFRVSIQTMASALNIGYSVENAVRETARDLKPLFRRDSRIRKEFERMI 93 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + + +S + + ++V F V S + GG+ L + R + D+ + Sbjct: 94 HQLDINQPVEQVMSELADRVSQEDVENFVIVFSAAKRTGGDSISILRSAVRDISDKIEAE 153 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++Q L K ++ +PF + + P +M VL + G L+ V Sbjct: 154 KEIQTLLASKKLEFKVMCIIPFGILFYMRLAFPEFMQVLYGNLAGAALMTVCLGIYAAAY 213 Query: 177 MVMRLMINFDV 187 + ++ +V Sbjct: 214 RMGEKLVEIEV 224 >gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] Length = 308 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 85/181 (46%), Gaps = 1/181 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + P A + S+ +G ++ + + + +PV +EF RV G+S Sbjct: 128 RREQHDAEEAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISA 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ + +S + + V + G L++ L+ S ++ +R +K ++ + + Sbjct: 188 TDALDDLLVRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQ 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ SA ++ ++P + ++ S + L P G + + A + ++V+R ++ Sbjct: 248 ARMSAHMVAAMPTGMCAVLALLSADFRRGL-ATPAGAGAVVLGLALNAVALVVIRRIMRV 306 Query: 186 D 186 + Sbjct: 307 E 307 >gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 79/155 (50%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H+I+ R K + P+ LD++ SV+AGL + A+ +V + P+ EFRR++ Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++ S+ M R +Q+V F + +LG ++S+ L + +RD + +A+ Q Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K ++ + + +V P ++++ Sbjct: 273 AMKAPVKMIFPLVFCIFPAIFVVVLL--PSLISLM 305 >gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium 2_1_46FAA] Length = 251 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 78/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K K+R KF F AL + + G + +A+ + + + EF + Sbjct: 60 KEYAKRRKEKFQKQFKEALQSLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYL 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + ++ + + EV+ F T++S + GG++ L + + + Sbjct: 120 VRQLEMNIPVEQAWKTFADRVEMSEVTHFVTILSTIKRSGGDMIAVLRQTIETICMKLEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ + + + I+ ++P + + + P +++VL + G +++ V Sbjct: 180 QQEIYTIIVAKQMEFRIMSAIPMGIIVYLKMSFPEFLSVLYQELVGKVVMTVCLLIYFAA 239 Query: 176 IMVMRLMINFDV 187 + ++ +V Sbjct: 240 YQWGKKILEIEV 251 >gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 289 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K + F D F +L +I R++ +G ++ ++ + +R EF R+I+ + Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L E+++ P + + FS + + + GG++ ++L L++ L + ++ K Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +L+ E++ +A I+ LPF + ++ + L + G ++ + IG ++++ Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281 Query: 181 LMIN 184 MI+ Sbjct: 282 RMID 285 >gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 291 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 85/182 (46%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + +KR D D + + + G +S A+A S V F I G Sbjct: 107 YRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRIANG 166 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ES++++ L E+ F T I + GG+L+ L+NL +R R + +V+ Sbjct: 167 AGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVRGS 226 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + +ASAW++G LP V+++V S YM I +P G LL A + G +MR + Sbjct: 227 TSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFGAFMMRNV 286 Query: 183 IN 184 + Sbjct: 287 VR 288 >gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 295 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 15/171 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ L P+ LD++ SV AGL A+ +V +S P+ EF + Sbjct: 139 LNLCRRQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIR 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M R + + +VS F + LG ++S L + +R ++ +A+ + Sbjct: 199 MGKPRREALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 A K + +++F P VL+ G LL + F Sbjct: 259 AQKAPVKI-----------LIPMLFFIFPTIFIVLL----GPALLQIGKVF 294 >gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L P+ALD++ SV AGL A+ IV + + + EF V+ Sbjct: 483 LSREITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMK 542 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + L E+ + I ++G ++ L+ S +R R+ +A+ Sbjct: 543 LGKSRRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAEEL 602 Query: 121 ALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 K ++ P L+ P +N L Sbjct: 603 GHKAVIKIIIPMVLFIFPAVFVVLLGPAIPTILNAL 638 >gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] Length = 268 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 78/179 (43%), Gaps = 6/179 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQHLGLSLSES 68 F A+ ++ S+ AG + ++ + Q + + EF + L +L E Sbjct: 90 QFKEAVLMLSSSLAAGYSMENSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEEL 149 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 S ++E+ F+ ++ + GG + +++++ I+ + ++ +++ ++ + + Sbjct: 150 WSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQKQF 209 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+ LP + + TSPG+ + + G +++ V A ++ M+ ++ Sbjct: 210 EQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLAVYAGAYVLAGRMLEIEI 268 >gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 311 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR + P+ALD++ V AGL A+ + + DP+ EF+RV+ Sbjct: 151 LGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTR 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++ M+ + +V F + QLG ++ L S +R R+ +A+ + Sbjct: 211 LGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEE 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A K + +V+ P V++ ++ Sbjct: 271 AHKAPIKM-----------LFPMVFLIFPALFIVILGPAVPRIM 303 >gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 75/192 (39%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 + L K+ + F + + + S+ G + +A + + EFR + Sbjct: 57 RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSESRIAKEFRII 116 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 ++ + + ++++ +F+ V + GG+L + N + ++RD+ + Sbjct: 117 CNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEV 176 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + ++ +PF + + SP ++ L + G ++ A + Sbjct: 177 AEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYALA 236 Query: 176 IMVMRLMINFDV 187 I + R + + V Sbjct: 237 IALGRKITDIKV 248 >gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K P+ LD++ SV AGL A+ +V + + P+ EF R+++ Sbjct: 148 LSKKISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIR 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ + +++++ F T I +LG ++ + L S+ +R ++ +A+ Q Sbjct: 208 MGKPRRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQ 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ K + LV+F P +L+ ++ Sbjct: 268 AMKAPIKM-----------LLPLVFFIFPTLFIILLGPAAIKVM 300 >gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium 4_1_37FAA] Length = 251 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55 K IKK+ +F F +L + ++ G +A+ S + E+ + Sbjct: 60 KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I ++ + L + + ++VS F +V + GG+ E + N + + ++ + Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++ K ++ +PF + + P ++ VL + G ++ V A Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239 Query: 176 IMVMRLMINFDV 187 + + MI +V Sbjct: 240 FYMGKKMIEIEV 251 >gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1 [Achromobacter xylosoxidans A8] Length = 281 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 95/176 (53%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL ++ ++RAG ++ + +V QS P+ EF ++ Q +G+ ++ Sbjct: 106 FEQQLPMALLMLAAALRAGAALTTGLRHVVEQSGAPLAQEFGLMLREQRMGVPWDSALEN 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + MP + + + +Q GGNL+EAL ++++ LR R ++AK+ AL+ + + AW Sbjct: 166 LRNRMPADSTALVVAAMRIAAQTGGNLAEALESIAQTLRARLQLQAKLLALTSQGRLQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+GSLP + ++ P M +L + P G +L + A G++++R ++ D+ Sbjct: 226 IVGSLPLLLLAVLDRLEPEIMGLLWHTPVGWGVLTIVAVLETTGMLLIRRIVRIDI 281 >gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 326 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +KKR A+ + FP+ALD+++ V AG + ++ + +S + EF V + Sbjct: 163 VNSRVKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQ 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + + +V+ F T + + G +++EAL S +RD++ M+A Sbjct: 223 EIKAGKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRA 282 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A ++ K + ++ +LP + L+ Sbjct: 283 EEKANTLPTKLTLGTMLFTLPPLLIILI 310 >gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 251 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55 K IKK+ +F F +L + ++ G +A+ S + E+ + Sbjct: 60 KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I ++ + L + + ++VS F +V + GG+ E + N + + ++ + Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +++ K ++ +PF + + P ++ VL + G ++ V A Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239 Query: 176 IMVMRLMINFDV 187 + + MI +V Sbjct: 240 FYMGKRMIEIEV 251 >gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 291 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 84/170 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L+ +R + G A + +S+ P+R+ RV + LGL L E + R + Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L E++ +T + V + GG+L + L + +LR ++ + +++AL+ E + +A ++ Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P + + T+P +++ + + G L +A L G VM M+ Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289 >gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] Length = 323 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ ++++++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K L + PG M V+ Sbjct: 278 EEIAAKIPTKM--LFPMLLFIWPCFFIVALGPGMMIVM 313 >gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 330 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +R + + FP+ALD+++ V AG + A+ + + + EF V Sbjct: 159 INKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSH 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + + M + +++ F TV+ + G ++++AL + +RD++ M+A Sbjct: 219 EIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRA 278 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A + K + A ++ ++P + L+ Sbjct: 279 EEKANKLPTKMTLATMMLTVPPLLIILI 306 >gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIE 57 H + + K +F + I S+ AG + +A+ + E + +I Sbjct: 63 HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + M ++ L+E F+ VIS+ + GGNL E N L K Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + + I+ +P+ + V +PGY ++L G ++ ++ + I + Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242 Query: 178 VMRLMINFDV 187 + ++ Sbjct: 243 WAERVTEIEI 252 >gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein [Maritimibacter alkaliphilus HTCC2654] gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein [Rhodobacterales bacterium HTCC2654] Length = 324 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 + R + + FP+ALD+++ V AG + A+ + + + EF V Sbjct: 163 RRVDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEI 222 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M + +V F TV+ + G +++EAL + +RD++ M+A+ Sbjct: 223 KAGKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEE 282 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 +A ++ K + A ++ ++P + L+ Sbjct: 283 KANTLPTKMTLATMMLTVPPLLIILI 308 >gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] Length = 285 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL---SESIS 70 +P AL + +++ G A+ + P+R F V+ S E++ Sbjct: 105 HQYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVL 164 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + +++ + + + + GGNL E L +L + L +R++ + V A++ EA+ +A Sbjct: 165 EVAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTA 224 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +LPF + + +P +M + + G+ L+ A +L+G V+R M+ Sbjct: 225 AFLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMV 277 >gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 323 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + K R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++S++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K L + PG M V+ Sbjct: 278 EEIAAKIPTKM--LFPMLLFIWPCFFIVALGPGMMIVM 313 >gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2] Length = 321 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 + R + FP++LD+++ V AG + ++ + + + EF V + Sbjct: 164 RRQQMRQEAIENAFPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEA 223 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M + +++ F TV+ SQ G ++++AL S +RD++ M+A+ Sbjct: 224 KAGKDKNTVLKDMSDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEE 283 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +A + K + + + ++ P ++ + Sbjct: 284 KANKLPTKMTLATMMLTVPPLMAML--IGPSIYAIVTS 319 >gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 307 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 2/149 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD++V SV AGL A+ + +S P+ E RV++ +G S + Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + ++EV F + S+LG ++ L +R R ++ +A+ A + Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAEEMAQKVPV 274 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K ++ + + ++ PG ++++ Sbjct: 275 KVMFPVVLCILPAL--IITVVGPGVLSIM 301 >gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614] Length = 304 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 3 HLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +L +K R+ + P+A+D++ SV AGL AV + + P+ E RV+ Sbjct: 148 YLYQKSYDRSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREM 207 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG S S ++ + + E+ F + LG +++ L SR +R ++ A+ Sbjct: 208 QLGQSRSAALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEE 267 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A + K + +I + C+ +V P +N++ Sbjct: 268 RAQQVPVKITVPLIFCILPCLFVVV--LGPAVLNIM 301 >gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A FP+ LD++ SV AGL A+A +V +S PV EFRRV++ Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ + +V F+ I QLG N+ + L S +R ++ + + Q Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ + K + LV F P VL+ ++ Sbjct: 268 AMKVPVKM-----------LLPLVAFIFPTIFIVLLGPAMIQIV 300 >gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans C54] Length = 303 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 72/168 (42%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + P LD IVR V G ++ A + +P+R L ++ ++ Sbjct: 136 VSQLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQV 195 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R ++E+ + V+SV + GG + L ++ +RD +A++ A S E + SAWI Sbjct: 196 SRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWI 255 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + LP ++ + + L DP G +L A + G ++ Sbjct: 256 LALLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYILY 303 >gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 326 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 + R + FP+ALD+++ V AG + A+ + + P+ EF V Sbjct: 169 RAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMK 228 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + M + +Q+V+ F T + S G +++EAL S +RD++ +A+ + Sbjct: 229 AGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEK 288 Query: 121 ALSMEAKASAW-IIGSLPFCVSTLV 144 A + K + + ++ +P + L+ Sbjct: 289 ANKLPTKLTLFTMLFCVPPLLVILI 313 >gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 227 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 78/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 + L ++R + F + ++ + AG + + +A+ G+ + EF + Sbjct: 36 RDLRQERIRQLGLQFKEGILVLASYLGAGYSLENGLAMCTGELEGIYGKQGMITEEFSTL 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + L++V F+ V + + GG L + + I+RD+ + Sbjct: 96 TNGVRMNRPVELLLMEFGARSGLEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQV 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ I+ +PF + + TS G+ V+ G ++ + A L Sbjct: 156 QEEIHTMTAARVFEQKIMNGIPFLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGA 215 Query: 176 IMVMRLMINFDV 187 M+ + ++ +V Sbjct: 216 WMLSKKILEIEV 227 >gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] Length = 301 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 I+KR + +F + + + S+ AG +A + S + E + V Sbjct: 110 SRCIEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWV 169 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + M ++E+S F+ V+ V + GGN+ + + + + + Sbjct: 170 IRGLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEV 229 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++Q + K I+ +PF + + + Y+++L + G +++ + A ++ Sbjct: 230 ELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSILS 289 Query: 176 IMVMRLMINFDV 187 R MI V Sbjct: 290 AAWSRKMIRIGV 301 >gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 323 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 + R + FP++LD+++ V AG + ++ + + + SE+ V Sbjct: 163 RQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMK 222 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M + +++ F TV+ G +++EAL + +RD++ M+A+ + Sbjct: 223 AGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRAEEK 282 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144 A ++ K + A ++ ++P + L+ Sbjct: 283 ANTLPTKMTLATMMLTVPPLLIILI 307 >gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 326 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 73/145 (50%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 +R + ++ FP++LD+++ V AG + ++ + + + E++ V Sbjct: 166 RQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMK 225 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + M + ++S F TV+ Q G +++EAL S +RD++ M+A+ + Sbjct: 226 AGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEK 285 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144 A ++ K + A ++ ++P + L+ Sbjct: 286 ANTLPTKMTLATMLLTVPPLLIILI 310 >gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 331 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 11/154 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P+ +D++ SV AGL A+ + + PV +EFR+ ++ LG+ E++ + Sbjct: 187 RALPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLA 246 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L E+ F+ + +LG +L+ L + LR ++ +A+ QA+ K Sbjct: 247 DRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKM----- 301 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + LV F P VL+ +L Sbjct: 302 ------LLPLVLFIFPTLFIVLLGPALIQILAAF 329 >gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 319 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 2/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + P+ALD++ V AGL A+A + + + F RVI+ Sbjct: 158 LTSKISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQ 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ M + + E++ F + QLG ++++ L S +R R+ A+ + Sbjct: 218 LGKTRRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEE 277 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 A K I +L S ++ +P + ++ + G Sbjct: 278 AHKAPVKM--LIPMALLIFPSLMIVLMTPAALRLMNSALAGM 317 >gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] Length = 247 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 82/179 (45%), Gaps = 1/179 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + A + S+ +GL ++ A+ + + +PVR+EF R G + Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ +V + + F + + V + G LS+ L +R++R+R ++ K+ + + Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA ++ +P + + S + + P G + VA I ++++++ Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVP-GAASIAVALLLDGIAWSIIKVVMR 244 >gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium SSC/2] Length = 252 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 5/190 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIE 57 H + K +F + I S+ AG + +A+ + E + +I Sbjct: 63 HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + M ++ L+E F+ VIS+ + GGNL E N L K Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + + I+ +P+ + V +PGY ++L G ++ ++ + I + Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242 Query: 178 VMRLMINFDV 187 + ++ Sbjct: 243 WAERVTEIEI 252 >gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 324 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 ++KR + FP+ALD+++ V AG + ++ + + + EF + Sbjct: 164 RMEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMK 223 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S+ ++ M Q+VS F TV++ G ++S+AL + +RD++ M+A+ Sbjct: 224 AGKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEA 283 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + + +P + LV Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] Length = 326 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I++R K + FP+ALD+++ V AG + A+ + + + EF V Sbjct: 166 RRIEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + M +Q++S F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 226 KAGKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEE 285 Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + +G +P + LV Sbjct: 286 AANKLPVKMTLATMGLTVPPLLIILV 311 >gi|153853656|ref|ZP_01995036.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814] gi|149753811|gb|EDM63742.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814] Length = 258 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 6/182 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSL 65 F F + + ++ G V +A + + E + + + + Sbjct: 77 FQKQFREMIQTLSSALNTGYSVENAFYETQKELKIQYPEEARISRELLLITRKLRMHIPV 136 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + +P ++V F TV + GG++ + N + + D+ +K ++ L Sbjct: 137 EQVLEEFAEKVPSEDVKSFVTVFVTAKKSGGDMIGIIRNTTSQIGDKIEVKREIDTLLAA 196 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K I+ +P+ + + + +M L + G ++ + + + ++ Sbjct: 197 KKYEFQIMSMVPYGIIAYMSLSFSDFMEELYGNVTGIGVMTLCLGIYVGAYYLGVRLLRI 256 Query: 186 DV 187 DV Sbjct: 257 DV 258 >gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] Length = 324 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 +++R + + FP+ALD+++ V AG + ++ + + + EF + Sbjct: 164 RVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMR 223 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++ M +Q+VS F TV++ + G ++++AL + +RD++ M+A+ + Sbjct: 224 AGKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEK 283 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + + +P + LV Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681] gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681] Length = 291 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 84/195 (43%), Gaps = 12/195 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K L+++R + F AL + S+ AG V + V + EF Sbjct: 100 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 159 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + +G + ++ + R +++++ F+ V + + GG+L E + S ++ ++ Sbjct: 160 ITACLEIGQPVEAALQELARRAQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 219 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + ++ + PF + T+ YM L + G ++ +++ Sbjct: 220 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTMTAGDYMMPLYS---GTGMILSTFCLLVL 276 Query: 175 G--IMVMRLMINFDV 187 G ++ + ++ +V Sbjct: 277 GGCLVWINHIMKIEV 291 >gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium phytofermentans ISDg] gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium phytofermentans ISDg] Length = 247 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 + + + R K +F + + + ++ AG V +A + + EF+ + Sbjct: 56 RKMAEDRKKKLNTEFLDGIHSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCI 115 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + +I L++V FS V + GG+L + + + ++ + Sbjct: 116 VSQINHNIPIENAIGEFANRSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEV 175 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +++ L K A I+ +PF + + SP ++ L ++ G + + + L Sbjct: 176 MREIETLITAKKMEANIMKLVPFGILGYMLLGSPQFLKPLYHNLFGIIFMTILLGIYLFL 235 Query: 176 IMVMRLMINFDV 187 ++ +I V Sbjct: 236 TKLVDKIIAIRV 247 >gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 987 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 13/164 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++R + + FP++LD+++ V AG + ++ + + + E+ V Sbjct: 824 VNKRQQERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAY 883 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + +V+ F TV+ Q G +++EAL + +RD++ M+A Sbjct: 884 EMKAGKDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRA 943 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV---------YFTSPGY 151 + +A ++ K + A ++ ++P + L+ +P Y Sbjct: 944 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTLIAPDY 987 >gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 331 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 I KR + + FP++LD+++ V AG + A+ + + + EF V Sbjct: 170 RIDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIK 229 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + M + +V+ F TV+ G ++++AL + +RD++ M+A+ + Sbjct: 230 AGKDKITVLKDMAERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRAEEK 289 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + ++ ++P + L+ Sbjct: 290 ANVLPTKLTLGTMMFTVPPLLIILI 314 >gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter denitrificans OCh 114] gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter denitrificans OCh 114] Length = 355 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + R + FP++LD+++ V AG + + + + + EF V Sbjct: 191 VRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 250 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A Sbjct: 251 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRA 310 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + A + K + A ++ ++P + LV Sbjct: 311 EEAANKLPTKMTLATMMLTVPPLLIILV 338 >gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM 3645] Length = 309 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 15/178 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + +L KKR + P+ALD++V V AGL + A+ + + + EF Sbjct: 143 LWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRVSEEMKKTYRVIAEEFGLCNF 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S+ + + + ++ + ++ + G ++S+AL S +R R+ A Sbjct: 203 QLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQIA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A K + LV+F PG VL+ P ++ M Sbjct: 263 EEKAAKTAVKM-----------IFPLVFFIFPGIFVVLVG-PAAITVIREMLPMMAAN 308 >gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149] gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 77/188 (40%), Gaps = 6/188 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQ 59 K++ +F + F ++ + ++ G V +A+ + + E+ ++ Sbjct: 45 KQKKEEFREQFRESIQTLSAILKVGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L ++ E + + + ++V F TV +LGG+ + + + + ++ ++ ++ Sbjct: 105 DLNMTAEEVMKQFADRVKEEDVENFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 Q + K I+ +PF + + P +M VL + G + + + L + Sbjct: 165 QVMLTSKKLEFKIMCVIPFVIILYMRSAFPEFMAVLYGNLAGTLFMTICLMVYLTAYQLG 224 Query: 180 RLMINFDV 187 + M +V Sbjct: 225 KKMTQIEV 232 >gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 7/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K +I KR + F + L + S+ AG P+ + + + E + Sbjct: 55 KQIIYKRKRELNLQFKDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKI 114 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +I L +S+ ++IS + ++ FS VI + + GGNL EA+ N SRI+ ++ Sbjct: 115 IINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIE 174 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 MK +++ L + I+ +P + ++ T+ Y+ + G + + + +++ Sbjct: 175 MKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLVLLIV 234 Query: 175 GIMVMRLMINFD 186 ++ ++N Sbjct: 235 AYLISNKIMNIK 246 >gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 306 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ LD+++ SV AGL A+ + + + E + ++ Sbjct: 148 VKRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIR 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ M + ++S F + + QLG N+++ L + +R R+ M+A+ + Sbjct: 208 MGKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEE 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ K + LV+F P VL+ ++ Sbjct: 268 AMRAPIKM-----------LFPLVFFIFPALFVVLLGPAGIRIV 300 >gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 274 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVI 56 L++KR + F AL + S+ AG V +A + EF + Sbjct: 84 LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIR 143 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G +L +S+ L+E++ F V S + GG+L + + S+++ ++ +++ Sbjct: 144 HRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDIQ 203 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + + + + I+ ++PF + +P Y L + P G++LL + + Sbjct: 204 QEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGCG 263 Query: 177 MVMRLMINFD 186 ++R ++ Sbjct: 264 ALIRKLMMIR 273 >gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus polymyxa SC2] gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus polymyxa SC2] Length = 263 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 84/195 (43%), Gaps = 12/195 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 K L+++R + F AL + S+ AG V + V + EF Sbjct: 72 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + +G + ++ + R +++++ F+ V + + GG+L E + S ++ ++ Sbjct: 132 ITACLEIGQPVEAALQDLARRAQIEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + ++ + PF + T+ YM L + G ++ +++ Sbjct: 192 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTVTAGDYMMPLYS---GTGMILSTFCLLVL 248 Query: 175 G--IMVMRLMINFDV 187 G ++ + ++ +V Sbjct: 249 GGCLVWINHIMKIEV 263 >gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 310 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 11/168 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + P+ALD++ SV AGL A+ + ++ + EF +++ H Sbjct: 153 LNSRIRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECH 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M + + ++S F I + LG ++ L S+ +R ++ K + Sbjct: 213 MGKPRREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEEL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 A+ K + +V+F P +L+ ++ A Sbjct: 273 AMKAPIKM-----------LFPMVFFIFPAIFVILLGPAALQIMKAFA 309 >gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A ++ K + ++ ++P + L+ Sbjct: 282 EEKANTLPTKLTLGTMLLTVPPLMLILI 309 >gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 320 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ LIKKR + + FP+ LD+++ AGL ++ A+ + + S + E V Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ E++ ++E+ F +S + G ++++ L S RD++ +A Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + M AK +I L FC+ + P + VL Sbjct: 279 EE----MAAKMGTKMIFPLIFCILPSFFLVAIGPAVLGVL 314 >gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 285 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 83/195 (42%), Gaps = 12/195 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 + ++++R F AL + S+ AG V + V S + E + Sbjct: 94 QFMLERRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKV 153 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ G + ++ R +++++ F+ V S + GG+L E + S ++ ++ + Sbjct: 154 IVSRLEYGEPIEAALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + + + PF + + TSP YM + + G ++ A + Sbjct: 214 IQQEIAVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GSGIMISTFALAAL 270 Query: 175 G--IMVMRLMINFDV 187 G + + M+N V Sbjct: 271 GGCFLWINKMMNIKV 285 >gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] Length = 307 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 4/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + P LD++ SV+AGL A++ I + P E RR+ + Sbjct: 152 LNTTIQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++ M L++VS F T I +LG ++ + L N + +R+R+ K Q Sbjct: 212 MGVVRRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQ 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147 A+ K I+ L + ++ Sbjct: 272 AMKAPVK----IVFPLVLFIFPAIFVV 294 >gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 323 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ +++ L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + C + PG + V+ Sbjct: 278 EEIAAKIPTKMLFPMLIFIWPC--FFIVALGPGLLIVM 313 >gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 323 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 77/173 (44%), Gaps = 16/173 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ + + L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + A + K + ++ F P + V + G +++ A Sbjct: 278 EEIAAKIPTKM-----------LFPMLLFIWPCFFIVALGP--GIIIVIDALG 317 >gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 326 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I++R + FP+ALD+++ V AG + A+ + + + EF V + Sbjct: 166 RRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q+VS F TV+ + G +++EAL + +RD++ M+A+ Sbjct: 226 KAGKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEE 285 Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + + +P + LV Sbjct: 286 AANKLPTKMTLATMTLTVPPLLIILV 311 >gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 317 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R + P LD++ SV AGL ++ + + + P+ E +RV + Sbjct: 158 LSSKVNTRKNEIQRALPEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEIS 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ + + LQ++S F I QLG +S L S+ R ++ +A+ Q Sbjct: 218 MGKSRKEALIDLKERIDLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQ 277 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ K + L+ F P +L+ ++ Sbjct: 278 AMKAPVKL-----------LIPLILFIFPTIFIILLGPAALRIM 310 >gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 286 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F + +P+ +D I +VRAGL +S+A+A + + P+R FRR Sbjct: 95 LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKV 119 +ES+ R+ + + + ++ GG+L L +LS LRD ++++ Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSSFLRDDARTRSEL 214 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + A + + P+ V L+ F G + N P G +++G+ AA ++ VM Sbjct: 215 ESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRVM 272 Query: 180 RLMINF 185 + Sbjct: 273 LRIGRL 278 >gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] Length = 326 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + R + FP+ALD+++ V AG + + + + + EF V Sbjct: 164 VRRRVDSRKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVGRELRASYPALAEEFEMVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIGS-LPFCVSTLV 144 + A + K + +G +P + L+ Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLIILI 311 >gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2150] Length = 318 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64 R + FP++LD+++ V +G + A+ + + + EF V G Sbjct: 167 RQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKD 226 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + ++S F +V+ + G ++EAL S +RD++ M+A+ +A ++ Sbjct: 227 KKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTL 286 Query: 125 EAKAS-AWIIGSLPFCVSTLV 144 K + ++ LP + LV Sbjct: 287 PVKMTLGTMVFCLPSLLIILV 307 >gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] Length = 327 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + R + FP++LD+++ V AG + + + + + EF V Sbjct: 163 VRRRVDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A Sbjct: 223 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRA 282 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + A + K + A ++ ++P + LV Sbjct: 283 EEAANKLPTKMTLATMMLTVPPLLIILV 310 >gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040] Length = 323 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I++R FP+ALD+++ V AG + ++ + + + EF V Sbjct: 166 RRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAEEFEIVAHEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 226 KAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEE 285 Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + +G +P ++ L+ Sbjct: 286 AANKLPTKMTLATMGLTVPPLLAILI 311 >gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] Length = 259 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54 + K R + +F L + S+ AG + +AV + E Sbjct: 67 REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V + + + +M + + E S F+ V+ + + GGNL + + + + Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + + I+ +PF + V +PGY VL + P G +L V ++ Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246 Query: 175 GIMVMRLMINFDV 187 M + ++ +V Sbjct: 247 AGMWAKKIVEIEV 259 >gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] Length = 326 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A ++ K + ++ ++P + L+ Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312 >gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] Length = 259 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54 + K R + +F L + S+ AG + +AV + E Sbjct: 67 REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V + + + +M + + E S F+ V+ + + GGNL + + + + Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ + + I+ +PF + V +PGY VL + P G +L V ++ Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246 Query: 175 GIMVMRLMINFDV 187 M + ++ +V Sbjct: 247 AGMWAKKIVEIEV 259 >gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 326 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A ++ K + ++ ++P + L+ Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312 >gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis HTCC2601] gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601] Length = 323 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 70/145 (48%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQH 60 +++R + + FP+ALD+++ V AG + ++ + + + EF + Sbjct: 164 RVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMK 223 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ M + +VS F TV++ S G ++++AL + +RD++ M+A+ + Sbjct: 224 AGKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEK 283 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + + +P + LV Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308 >gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 326 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144 + +A ++ K + ++ ++P + L+ Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312 >gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 285 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 82/195 (42%), Gaps = 12/195 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54 + ++ +R F AL + S+ AG V + V S + E + Sbjct: 94 RFMLDRRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGASSDLIFELKV 153 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ G + ++ R +++++ F+ V S + GG+L E + S ++ ++ + Sbjct: 154 IVSRLEYGEPIEVALQDFARRAGMEDITNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++ + + + + + + PF + + TSP YM + + G +L A + Sbjct: 214 IQQEISVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GAGILISTFALAAL 270 Query: 175 G--IMVMRLMINFDV 187 G + + M+N V Sbjct: 271 GGCFLWISKMMNIKV 285 >gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 337 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + RT + D FP+ALD+++ V AG + + + + S + EF V Sbjct: 172 VNQRVAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAH 231 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + + +V+ F TV+ Q G +++EAL + +RD++ M+A Sbjct: 232 EIKAGLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRA 291 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K + ++ ++P + LV + M Sbjct: 292 EEAANKIPTKMTLGTMMFTVPPLLIILVGPSVHDMMENF 330 >gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 311 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 11/175 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ M +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 207 LGRTRREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEA 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A K + +V+ P V++ ++ + +G Sbjct: 267 AQKAPVKM-----------LIPMVFLIFPALFVVILGPAVPRIMSALGVMNSGMG 310 >gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 323 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I++R FP+ALD+++ V AG + A+ + + + EF V Sbjct: 166 RRIEERKQAITRAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAYEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 226 KAGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEE 285 Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + +G +P ++ L+ Sbjct: 286 AANKLPTKMTLATMGLTVPPLLAILI 311 >gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K LI+KR + F L +I+ S++AG + A+ + + +E + Sbjct: 54 KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + + + +++++ F+ V V + GGNL + + + + + D+ M Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++QA K + + ++ + + + MN L G +++ A Sbjct: 174 EREIQAFISGKKLESKFMTAILPAILLYMNISMADMMNSLYQGILGRLVMSGVLAGYGFC 233 Query: 176 IMVMRLMINFDV 187 + + + V Sbjct: 234 CLWFDKITDIKV 245 >gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 297 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 65/142 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR D P+ LD++ +V AGL A+A + ++ P+ E V+ ++G ++ Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ S + + + + F T + +LG L++ LA ++ +R +A+ +A Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKAAKAS 263 Query: 126 AKASAWIIGSLPFCVSTLVYFT 147 K + + + L+ + Sbjct: 264 PKIAGVVTIIMVPGTMALIMVS 285 >gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] Length = 314 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + HL+KKR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + ++ L E++ T+++ S++GG+L++ L + RD++N + Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + K ++ + C + P + L G Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML--LFTSTLG 313 >gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 308 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 7/155 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 ++KR + FP+ALD+++ V AG + ++ + + + EF V Sbjct: 152 RVEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMK 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ M +Q+VS F TV+ + G ++S+AL + +RD++ M+A+ Sbjct: 212 AGKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEA 271 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P L+ +P MN+ Sbjct: 272 ANKLPTKMTLATMMLTVPP---LLIILVAPSVMNI 303 >gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] Length = 326 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 +KR + D FP++LD+++ + AG + ++ + + + EF V Sbjct: 167 RQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIK 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + M +Q++S F TV+ G ++ EAL + +RD++ M+A+ + Sbjct: 227 AGRDKPSVLGEMAERCGVQDISSFVTVLVQSQTFGTSIGEALRVYAGEMRDKRVMRAEEK 286 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K + A ++ ++P + LV + G M++L Sbjct: 287 ANKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322 >gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666] Length = 314 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+LI +R + + FP+ALD++ V AGL + A+A + + S + E + V Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + + +V ++ + G +++++L S LR ++ +A Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + LV P ++ + Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQIY 303 >gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 327 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 +++R FP+ LD+++ V AG + A+ + + + EF V Sbjct: 167 RRVEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEM 226 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G ++ + +Q+VS F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 KAGKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEE 286 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P + LV ++ G M Sbjct: 287 AANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMEF 322 >gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 307 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + IK+R + + P+A+D++ SV AGL A+ +V + + + EF R++ Sbjct: 150 LGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ + + +++ F + + QLG ++++ L S+ +R R+ +A+ Q Sbjct: 210 MGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQ 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A K + +V+ P VL+ Sbjct: 270 AHKAPVKM-----------IFPMVFLIFPALYIVLLG 295 >gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 1/156 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR P+ LD++ SV AGL A++ +V P+ E Sbjct: 149 LKRNIIKRKTAIYHQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREIS 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E++ R+ E+ F I+ +LG ++ + + +R + Q Sbjct: 209 MGIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQ 268 Query: 121 ALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K ++ LP ++ P ++ L Sbjct: 269 AQKLSVKMMVPMVLFILPVTFIIILGPAIPSVISAL 304 >gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] Length = 316 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 72/146 (49%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 ++ R ++ FP++LD+++ V AG + ++ + + + EF V + Sbjct: 159 RRVEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEA 218 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M + ++S F TV+ +Q G ++S+AL + +RD++ M+A+ Sbjct: 219 KAGKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEE 278 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + A ++ ++P ++ L+ Sbjct: 279 AANKLPTKMTLATMMLTVPPLMAILI 304 >gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 325 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 +++R ++ FP+ LD+++ V AG + A+ + + + EF V Sbjct: 167 RRVEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEM 226 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +Q+VS F TV+ + G ++++AL S +RD++ M+A+ Sbjct: 227 KAGKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEE 286 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P + LV ++ G M Sbjct: 287 AANKLPTKMTLATMMLTVPPLLVILVGPSAKGIMAF 322 >gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] Length = 303 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R P+A+D++V SV AGL A+ +V + + + EF R + Sbjct: 147 LSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ +++ + R + + +++ F + QLG ++S+ L + +R R+ +A+ Sbjct: 207 MGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQEL 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A K + +V+ P V++ ++ Sbjct: 267 AHKAPIKM-----------IFPMVFLIFPALYVVILGPAIPRIV 299 >gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] Length = 314 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++KKR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G +L + A Sbjct: 274 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPSMLFLTATL 312 >gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC 27560] gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC 27560] Length = 238 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60 + A+F + L + + G V + + + + SE R + Sbjct: 52 RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L + L+ F S+ + GGN++ + + + ++++K ++ Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVKEEIN 171 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K I+ +P + + SPG+++++ G++++ V L+ + Sbjct: 172 VAINDKKLEQRIMTVIPLLLIGYISMASPGFLDIMYKSIMGNIVMTVCLIVYLLAYLWSE 231 Query: 181 LMINFDV 187 ++ + Sbjct: 232 KIVKVSI 238 >gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750] gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750] Length = 235 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 80/187 (42%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE------FRRVIETQH 60 K+ F + + + ++ G + +A + + + SE F+ ++ + Sbjct: 49 KKKRILTKQFKDGIMAVSFALNVGYSIENAFSQAIDELILLYGSEADIVMKFKNIVVRIN 108 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +L + ++ + ++++ +F+ V + GG+L + N + I++ + + +V+ Sbjct: 109 QNENLEDILNDFAKECKIEDIMYFAEVFRYAKRSGGDLISIIRNTADIIQQKTEVATEVE 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + ++ ++P + + T+ ++ L + G +++ LI + + Sbjct: 169 TIVSGKRMEQKVMSAIPALIILYLKVTAREFVEPLYGNLSGVLIMTCCLGVYLISNVWSK 228 Query: 181 LMINFDV 187 ++N +V Sbjct: 229 RIVNIEV 235 >gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 311 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 11/175 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIR 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ +V +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 207 LGRTRREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEA 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A K + +V+ P V++ ++ + +G Sbjct: 267 AQKAPVKM-----------LIPMVFLIFPALFVVILGPAVPRIMQALGVMNSGMG 310 >gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] Length = 254 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A + S+ +GL ++ A+ + G+S +PVR+EF G+S +++ +V Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + V + G +L+ L+ + ++ +R + ++ + + + SA ++ Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +P + + S + + P G L VA A + +V+R ++ D Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253 >gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] Length = 327 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I++R + FP+ALD+++ V AG + A+ + + + EF V Sbjct: 167 RRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEM 226 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 KAGKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEE 286 Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144 A + K + + +P + LV Sbjct: 287 AANKLPTKMTLATMTLTVPPLLIILV 312 >gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 311 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ALD++ V AGL A+ + + DP+ EF+RV+ LG +++ M+ Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + +V F + QLG ++ L S +R R+ +A+ +A K Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKM------- 278 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + +V+ P V++ ++ Sbjct: 279 ----LFPMVFLIFPALFIVILGPAVPRIM 303 >gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 2/153 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 K+R + L D P LD I V GL ++ A+ + V + + P+R+EFR ++ G+ Sbjct: 183 AKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGM 242 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E R + +QE+ T I + GG+L+ L + R+ + ++A+ AL Sbjct: 243 PRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALE 302 Query: 124 MEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 K A I+ P L + Y+ + Sbjct: 303 APVKLLAPLIMFIFPIVFIVLTFVIYMKYVQEV 335 >gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 326 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 + R FP+ALD+++ V AG + ++ + + + EF V Sbjct: 166 RRVDTRKENITRAFPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M + +VS F TV+ SQ G +++EAL + +RD++ M+A+ Sbjct: 226 KAGKEKDKVLRDMGTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEE 285 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P + LV ++ G M++ Sbjct: 286 AANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMDL 321 >gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 325 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 5/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 +KR + D FP++LD+++ + AG + ++ + + + EF V Sbjct: 165 RQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIK 224 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ M +Q+++ F TV+ G ++ EAL + +RD++ M+A+ + Sbjct: 225 AGRDKPSVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMRDKRVMRAEEK 284 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K + + + L+ P + ++ Sbjct: 285 ANKLPTKMTLATMMLTVPPL--LIILVGPSVLGIM 317 >gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 +++R K FP++LD+++ V AG + ++ + + + EF V + Sbjct: 162 RRVEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEM 221 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q++S F TV+ G ++++AL + +RD++ M+A+ Sbjct: 222 KAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSQSFGTSIADALRVYAGEMRDKRVMRAEE 281 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + A ++ ++P + LV Sbjct: 282 AANKLPVKMTLATMMLTVPPLLIILV 307 >gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] Length = 254 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55 K+ K+ F +A+ ++ S++AG + +A + R+ Sbjct: 63 KNQKNKKCRLIGIQFKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRI 122 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + L + I M + ++ F+ V SV + GGN++E + ++ + + Sbjct: 123 SKGLRNNVPLEKLIFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEV 182 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ L + A I+ +PF + + TSPG+ + L ++ G L+ V I Sbjct: 183 EKEIEVLISAKRLEARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCIS 242 Query: 176 IMVMRLMINFDV 187 + ++N + Sbjct: 243 YYLSEKIVNISI 254 >gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 320 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 82/177 (46%), Gaps = 1/177 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A + ++ +G ++ + + + +PVR+EF R + G+S + ++ Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +P + + + V + G L + LA S ++ DR + +++ + +A+ SA Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ +P ++ ++ S + L P G + + A A M++R +++ + Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP-GTVSVVAALALNAAAWMIIRRIMDVRI 320 >gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 306 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 6/160 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + ALD++ V AG A+ + + P+ EF RV+ +G S S Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGFDAALVQVARSTDGPISGEFARVLSEVQIGKSRS 210 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ + + + L +V F + I +LG ++ L + +R + +A+ +A Sbjct: 211 EAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKA----Q 266 Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHML 164 K + I+ L C+ ++ PG + ++ G++L Sbjct: 267 KVTVKILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306 >gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] Length = 297 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 86/177 (48%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + LD+++ +R+G S A+A ++ P+R + + LG S S Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R MP+ + FST +SV + GG+L+ LA+++R+ RDR+ + ++++ +++ Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S + L + V+ +++ P +M + G + +GI+ M + Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSAAIAATIVLQAVGIIWMNAISR 294 >gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656] gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656] Length = 286 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 75/193 (38%), Gaps = 7/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ +IKK+ + F + L+ + S+ AG V D+ + + SE Sbjct: 95 IQSIIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAYIISELEL 154 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + +++ F+ V + + GGN+ + + + IL D+ Sbjct: 155 LLSGMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRSTYEILNDKME 214 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ + K ++ +P + ++ SP + P G M VA + Sbjct: 215 IAEDIETVVTANKTEQNVMLIMPIGLIGMMKLMSPDFAEN-FVSPSGIMATTVAVIIFVA 273 Query: 175 GIMVMRLMINFDV 187 + R ++ + Sbjct: 274 AYFIGRKVLEIKI 286 >gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 238 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 71/190 (37%), Gaps = 6/190 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57 L KR F + L + ++ AG V + V D + E ++ Sbjct: 49 LAWKRKQLLHYHFRDFLAALHTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILR 108 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 H + + R L+++ F+ ++S+ + GGN++ L R L + + K Sbjct: 109 QMHFQKPVEVLFRDLGRRSGLEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQ 168 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ + K ++ +P + + T G++ + +P G +++ V Sbjct: 169 EIDTMIAARKYEQKLMSLMPAGIILYLRLTFQGFIERMYGNPAGVLVMTVCLGVYAGAYF 228 Query: 178 VMRLMINFDV 187 + + + V Sbjct: 229 FGKKLTDIRV 238 >gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 326 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I +R + FP++LD+++ V AG + ++ + + + EF V Sbjct: 166 RRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAHEM 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + M +Q++S F TV+ + G +++EAL + +RD++ M+A+ Sbjct: 226 KAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRAEE 285 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + A ++ ++P + LV Sbjct: 286 AANKLPVKMTLATMMLTVPPLLIILV 311 >gi|291548759|emb|CBL25021.1| Flp pilus assembly protein TadB [Ruminococcus torques L2-14] Length = 251 Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQHL 61 + +F F +++ + +++AG V +A+ +R E+ +++ L Sbjct: 66 KEQEFRRQFRDSIQTMAGALKAGYSVENAIRETNRDLIGMYDANTRIRKEYGQMVRRLDL 125 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 LS+ ++ + ++V+ F TV + GG+ + + +R + ++ + + ++Q Sbjct: 126 NLSVVTVLNEFAAEVKQEDVTNFITVYAAAKVSGGDSIAIIRDAARTIGEKIDTEREIQT 185 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + K I+ +PF + + T +++VL G +++ + L Sbjct: 186 MLAAKKLEFEIMSVIPFIMILYMKMTFGEFLSVLYGTWTGCIVMSICLVLYLGAYRFGWR 245 Query: 182 MINFDV 187 ++ ++ Sbjct: 246 LLQIEI 251 >gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] Length = 246 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 75/187 (40%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQH 60 + K +F L + ++ AG + A + + ++ E + +I Sbjct: 60 RMQKKLNMEFKEMLLSLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLE 119 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + + L +V F+ V +V + GGNL + + + + + +R ++ ++ Sbjct: 120 MNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTIEERLEVEDEID 179 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + I+ ++PF + + +PGYMN L + G + V + + + R Sbjct: 180 TMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGNVFGIAAMSVCLIVIFLMVAWGR 239 Query: 181 LMINFDV 187 + N V Sbjct: 240 KITNIRV 246 >gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] Length = 328 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 4/145 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 ++R + FP++LD+++ V AG + ++ + + + + E++ V Sbjct: 168 RQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVANQIK 227 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ M +Q++S F TV+ G ++++AL + +RD++ M+A+ + Sbjct: 228 AGRDKPSVLNEMAERCGVQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRAEEK 287 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + A ++ ++P + LV Sbjct: 288 ANKLPTKMTLATMMLTVPPLLIILV 312 >gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649] Length = 301 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 4/141 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + F +ALD++ V +G A+ + + P+ EF RV+ +G++ Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M EV F + + +LG ++ L ++ +R + A+ +A Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKA----Q 264 Query: 127 KASAWIIGSLPFCVSTLVYFT 147 K + ++ + C+ +++ Sbjct: 265 KVTVKVVFPVLLCIFPVIFVV 285 >gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 308 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 11/168 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R D P+ LD++ SV AGL A+A + + + EF R ++ Sbjct: 150 LNRKIAMRKRSIQKDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMR 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E++ M + ++S F+T + QLG ++ + L S +R+++ + + Sbjct: 210 MGVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQEL 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 A+ K + LV+F P V++ + L + Sbjct: 270 AMKAPVKM-----------LLPLVFFIFPAIFVVVLGPAIIQIFLTFS 306 >gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] Length = 314 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + + KR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G +L + + Sbjct: 274 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPSMLSITSTL 312 >gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 312 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + HL+ R + + FP+ALD++ V AGL A+ + + E R V Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ + ++EV F T+IS + G +++ +L + +LR R+ +A Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + AK + ++ L FC+ +V P + + Sbjct: 267 EE----AAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIY 302 >gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 329 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G LL ++ A Sbjct: 290 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AVGPALLSLSDAL 328 >gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 305 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 + +R + FP+ALD+++ V AG + + + + + EF V Sbjct: 148 RRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEM 207 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 208 KAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEE 267 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 A + K + A ++ ++P + LV Sbjct: 268 AANKLPTKMTLATMMLTVPPLLIILV 293 >gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4] Length = 245 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 314 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G LL ++ A Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AVGPALLSLSDAL 313 >gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15] Length = 305 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 76/179 (42%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ + ++ P+ LD ++RS+ G V +V S R+ G Sbjct: 122 ERQRRQIFEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQGRDY 181 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + I + ++ + S+ G +L L +++ +R R++++ + A + E Sbjct: 182 TRVIDEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAE 241 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A +P ++ + + G+ L++ G LL ++ LIGI+ + +I Sbjct: 242 TRFTAVAFAIIPPGLAAYMVILNDGFSAQLLDTNAGQTLLWMSGILQLIGIVFIWRLIQ 300 >gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 314 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + ++ R + ++FP+A+D+++ V AGL + A+ + + S + E V Sbjct: 148 LSRRVENRQREIFNNFPDAIDLLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + +QEV ++ + G ++ E+L + LR ++ ++A Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + AK ++ L FC+ L+ P ++ + Sbjct: 268 EE----AAAKIPLKLLFPLIFCIFPALLLVLLGPAFIQIY 303 >gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis MSMB43] Length = 279 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I+ R K ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 114 LSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPIVADELGLMLL 173 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V F ++ + G ++ +L LS LR ++ M+A Sbjct: 174 EIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 233 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 234 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 271 >gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 302 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + + R + P+ LD++ SV AGL + A+ +P+ E + Sbjct: 143 LMYKVNNRKTEIFHTLPDILDLLTVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAR 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ M +++V F T++ + G +LS AL S LR ++ A Sbjct: 203 EIRAGKPRGDALRDMAERTDVEDVRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + +A AK + I+ L + ++ P + ++ Sbjct: 263 EERA----AKTAIKILFPLILFIFPALMIILIGPAFFKLM 298 >gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 297 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 85/177 (48%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + LD+++ +R+G S A+A ++ P+R + + LG S S Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + R MP+ + FST +SV + GG+L+ LA+++R+ RDR+ + ++++ +++ Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S + L + V+ +++ P M + G + +GI+ M + Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSAAIAATIVLQAVGIVWMNAISR 294 >gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium profundum SS9] gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum SS9] Length = 322 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ KKR + FP+ALD++V + AGL A+ + + S + SE + V Sbjct: 161 LQKKAKKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCR 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+ L ++S+ + L E+ ++IS +LG ++ + L + RDR+ KA Sbjct: 221 KVRLGVPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + K + LV PG+ V I + A G Sbjct: 281 EEEAAKIGTKM-----------IFPLVTCIWPGFFTVAIGP-------AIIAVLEAFG 320 >gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 312 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + H I R + + FP+ALD+I+ V +GL + A+A + + + E + Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++ + ++EV ++ + G N+S++L + LR ++ + A Sbjct: 207 ELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 + AK + ++ L F + L+ P ++N+ Sbjct: 267 EE----AAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301 >gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 245 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASREFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1] Length = 245 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 +R K + +F +A+ + ++ AG + A + + E ++ Sbjct: 54 NKKRDERAKKLMIEFRDAIQTVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ E + + ++E+ F+ + + GG+ + + + + + + Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V + K I+ +PF + + S +++ L + G +++ A + Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233 Query: 176 IMVMRLMINFDV 187 + + R + + V Sbjct: 234 MAINRRISDIRV 245 >gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2] gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 268 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 75/183 (40%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +KR + P +D ++R + AG + A+ + + R+ Sbjct: 81 NYRYQKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVES 140 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + I + + ++F + + S G + L +SR LR ++ M+ + A Sbjct: 141 GRDYTGLIDDFSKLYRIPPLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLA 200 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E + +A LP + + + + +VL++ G +L + +++G +++ Sbjct: 201 ATAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFR 260 Query: 182 MIN 184 M+ Sbjct: 261 MVQ 263 >gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Aromatoleum aromaticum EbN1] Length = 315 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + LI R + + FP+ALD++ V AGL V A+ + + + + E V Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + ++ + ++EV F ++ + G +++ +L S +LR R+ +A Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + AK + ++ L F + ++ P + V Sbjct: 267 EE----AAAKIALKLLFPLIFFIFPSLMLVLLGPAMIQVY 302 >gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 299 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 58/145 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +K+R P+ LD++ V AG+ A+ ++V + P+ E R++ Sbjct: 137 LRGRVKQRQHAITVALPDLLDMLAVCVSAGMGFDIALTLLVERGEGPLYEEMGRMLHELQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G ++ + + F + +LG ++ L + +R + +A+ + Sbjct: 197 MGAPREQAFRNLAARNSSDALRGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREE 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 K + ++ + V L+ Sbjct: 257 GAKAATKITLIVVVLVTPSVLCLII 281 >gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 328 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + KR K P+ALD++V V AGL + A+ + + + EF Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG SE +S + + ++ ++++ + G ++++AL S +R ++ A Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A K + LV F PG VL+ Sbjct: 288 EEKAAKTAVKM-----------IFPLVLFIFPGIFVVLVG 316 >gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2083] gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium HTCC2083] Length = 323 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 I R + FP++LD+++ V AG + ++ + + + E+ V + Sbjct: 165 RRIDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEM 224 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G ++ M +Q+V+ F TV+ + G +++EAL + +RD++ M+A+ Sbjct: 225 KAGKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEE 284 Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144 +A + K + A ++ ++P + LV Sbjct: 285 KANKLPTKMTLATMMLTVPPLLIILV 310 >gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio alginolyticus 40B] Length = 313 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + +V F P + V G L+ +A AF Sbjct: 273 EEIAAKIPVKM-----------MFPMVLFIWPCFFIV----AIGPALISLAEAF 311 >gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 314 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +I KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + M AK ++ + + + P +++ Sbjct: 275 EE----MAAKIPVKMMFPMVLFIWPCFFIVAIGPALISL 309 >gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + IK R ++ P+ALD++V V AG+ + A + + + + + E VI Sbjct: 163 LSRRIKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVIL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +E++ + + L++V+ T+I G ++S L S +R + +A Sbjct: 223 ELRAGKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155 + + AK ++ L FC+ ++ P ++ ++ Sbjct: 283 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 318 >gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 314 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + +A AK S I+ L FC+ V P + V+ Sbjct: 269 EERA----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01] Length = 315 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + +V F P + V G L+ +A AF Sbjct: 275 EEVAAKIPVKM-----------MFPMVLFIWPCFFIV----AVGPALITLAEAF 313 >gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 275 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 110 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 169 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 170 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 229 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 230 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 267 >gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1] gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH 1] Length = 328 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + KR K P+ALD++V V AGL + A+ + + + EF Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG SE +S + + ++ ++++ + G ++++AL S +R ++ A Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A K + LV F PG VL+ Sbjct: 288 EEKAAKTAVKM-----------IFPLVLFIFPGIFVVLVG 316 >gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio sp. Ex25] Length = 313 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + +V F P + V G L+ +A AF Sbjct: 273 EEIAAKIPVKM-----------MFPMVLFIWPCFFIV----AIGPALISLAEAF 311 >gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 317 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ I R K ++ FP+ALD++V V AG+ + A+ + + P+ EFR + Sbjct: 156 LRLKIGARKEKIMEGFPDALDLMVICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNM 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S E++ M L +V+ T++ Q G ++ +AL S +R ++ +A Sbjct: 216 EMRMGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRA 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K +I + + ++ P + V Sbjct: 276 EEKAAKLPLKLLFPLIFFIFPSLFVVI--MGPAMIQVF 311 >gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 291 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +KR + PNALD ++ SV+AGL A+ P+ E R ++ Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + + V F + G ++ L ++ +R ++ A+ Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A+ M K + L++F P VL+ ++ Sbjct: 255 AMKMPVKM-----------LFPLIFFILPTLFIVLLGPAVLQIM 287 >gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273] gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273] Length = 315 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 71/167 (42%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +KR + D P+ +D++V +G+ + A+ I + + + EF Sbjct: 151 LGFITRKRIGRLRDSLPDMIDLMVICTESGMGIDAAITRISKEMAGTNPDLAQEFYLSAL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L+++ +V++ + G +L+E+L S ++R R+ +A Sbjct: 211 EIRAGATRIEALRNLALRSRLEDLDDLVSVLAQADRFGTSLAESLRVQSDMMRSRRTQRA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + A + K + L+ F P M VL+ ++ Sbjct: 271 EELAAKIPVKM-----------LLPLILFIFPTLMMVLLGPAVIQVM 306 >gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 291 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR K D +P+A+D I VRAGL + +A+A + + + +R F R E Sbjct: 100 IRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYR 159 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + + R+ M + + ++GG +L L LS LR+ +A++ Sbjct: 160 ATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAEL 219 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V ++ P G ++L A ++ +M Sbjct: 220 EARQSWTINAARLAVAAPWVVLAMLALRGGSL--QAYATPTGWLVLAFGAGLCIVAYRLM 277 Query: 180 RLMINF 185 + Sbjct: 278 VWIGRL 283 >gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 296 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 6/156 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + PN LD ++ SV AGL A+A S P+ E R ++ G Sbjct: 140 RAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGR 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E+ + + + ++ F I G ++ L ++ +R ++ +A+ QA+ Sbjct: 200 SRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + K ++ L FC+ +++ P +NV+ N Sbjct: 260 LPVK----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291 >gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 315 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + KR P+ALD++V S+ AGL + A+ + + S + E + V Sbjct: 149 LEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQLVTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SE++ E ++ + G ++ E+L S LR R+ +A Sbjct: 209 EMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRRQEA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS--PGYMNVL 155 + +A K ++ + F + + + PG + + Sbjct: 269 EERA----GKVGVKLVFPIFFFILPSMLVVAAGPGILQIF 304 >gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218] Length = 318 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + A + K ++ + C + Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPCFFIV 303 >gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] Length = 318 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + A + K ++ + C + Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPCFFIV 303 >gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 313 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ KR +K P+ALD++V +GL + A+ + + S E V Sbjct: 153 LGFMVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCV 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + +++ L+E++ T+++ S++GG+LS+ L + RD++N + Sbjct: 213 KVNAGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEI 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G +L A Sbjct: 273 EEVAAKIPTKM-----------IFPLLIFIWPCFFIV----AIGPSMLLFTATM 311 >gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] Length = 314 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + +A AK S I+ L FC+ V P + V+ Sbjct: 269 EERA----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4] Length = 287 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L KKR + P LD + S+ AGL ++ A++ V + P+R EF +VI Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + EV+ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +AL K +I + ++ F P M + Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286 >gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 323 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + H + +R ++FP+ +D++ V AGL + A+ + + + + E + ++ Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L ++L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312 >gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 321 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L K+R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + QA AK + +I + C+ S + P + V+ Sbjct: 279 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 314 >gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 313 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ KR P+ LD++V +GL + A+ + + S + E V Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ES+ +V L+E+ +++S S++GG+L +L + RD++ A Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + +V F P + V G L+ +A AF Sbjct: 273 EEIAAKIPVKM-----------MFPMVIFIWPCFFIV----AIGPALISLAEAF 311 >gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 313 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + +KR + D P+ +D++V +G+ + A+A I + + + EF + Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L+++ T+ + G +++AL S +LR R+ +A Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K + ++ + + L+ P + ++ Sbjct: 273 EEMAAKIPVKMTVPLVLFI--FPTLLMVLLGPAIIQIM 308 >gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 314 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G LL ++ A Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPALLSLSDAL 313 >gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 306 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P +DI+ SV AGL A+ + ++ P+ EFR LG E+++R+ Sbjct: 162 QLPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSE 221 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA-WII 133 ++EV F+ I +LG +L L + S+++R + +A + K ++ Sbjct: 222 RTEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVL 281 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 P L+ P ++ L Sbjct: 282 FIFPVIFIILLGPAVPTIIDAL 303 >gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 314 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 18/174 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L+ F P + V G LL ++ A Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPALLSLSDAL 313 >gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 320 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L K+R K FP+ALD++V AGL + A+ + + S + SE V Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S R+++ A Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + QA AK + +I + C+ S + P + V+ Sbjct: 278 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313 >gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 304 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R + D P+ LD++ SV AGL A+ +V + + E R+++ Sbjct: 149 LKAKSAARQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +++ + +++V F + QLG ++ L S +R ++ +A+ + Sbjct: 209 MGKPRRDALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQK 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K I + + + P + VL Sbjct: 269 AMKAPVKM--LIPLIIFIFPTIFIVVLGPAAIQVL 301 >gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 313 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L+ +R + + FP+A+D++ V AGL + A+ + + S + SE V Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + ++E+ +++ + G +++ +L S LR + ++A Sbjct: 208 ELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + AK + ++ L F + L+ P ++N+ Sbjct: 268 EE----AAAKIALKLLFPLIFFIFPSLLLVLMGPAFINIY 303 >gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 313 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A AK ++ L FC+ +Y Sbjct: 269 EERA----AKIGTKVLFPLIFCLFPALYVV 294 >gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 285 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 76/185 (41%), Gaps = 12/185 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIETQHLGLS 64 F AL + S+ AG V + V S + E + ++ G Sbjct: 104 LNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEP 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ R +++++ F+ V S + GG+L E + S ++ ++ +++ ++ + Sbjct: 164 IEVALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIA 223 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLM 182 + + + + + PF + + TSP YM + + G + A +G + + M Sbjct: 224 QKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GSGFMISTFALAALGGCFLWITKM 280 Query: 183 INFDV 187 +N V Sbjct: 281 MNIKV 285 >gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 296 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 71/152 (46%), Gaps = 6/152 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + + P+ +D++V SV AGL + A++ + + P+ F R + LG S Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ +P++EV F + +LG +SE L + + L+ + +KA+ A Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHARKAP 262 Query: 126 AKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 K I+ + + V P +++++ Sbjct: 263 IK----ILFPMILFIFPSLFVVILGPAFLSIM 290 >gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 313 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A AK ++ L FC+ +Y Sbjct: 269 EERA----AKIGTKVLFPLIFCLFPALYVV 294 >gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] Length = 224 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ KKR K + FP+ALD++V + AGL A+ + + + +E + V Sbjct: 63 LQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCR 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+ + ++++ + L E+ ++IS +LG ++ + L + RDR+ KA Sbjct: 123 KVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 182 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + +A AK +I L C+ V P + VL Sbjct: 183 EEEA----AKIGTKMIFPLVTCIWPGFFVVAVGPAIIAVL 218 >gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614] Length = 284 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R + + +P A+D + +VRAG+ + DA+A + + +P+R F + + Sbjct: 96 RARRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTG 155 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQAL 122 E + R+ + + + ++ GG L L NLS LRD +++++A Sbjct: 156 RFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGRLLRNLSSYLRDDARTRSELEAR 215 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A + + P+ V + F S + P G ++L V A ++ +M + Sbjct: 216 QAWTVNGARLAVASPWLVLLFMSFQSE--VIHRYASPGGVLVLAVGAGACVVAYRLMMRI 273 Query: 183 INF 185 Sbjct: 274 GRL 276 >gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54] gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54] Length = 283 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R + FP+A+D+++ V AG+ + A+ + + +S + EF+ + Sbjct: 122 LKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKEFKILSL 181 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +E + + + L+++ +++ + G ++ AL + +R ++ + Sbjct: 182 ELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQKRYSRL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 + M AK ++ L F + ++ P + V Sbjct: 242 EE----MAAKLPVKLVIPLIFFIFPALFLVILGPAMIRVF 277 >gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX] gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX] Length = 273 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR + P+ LD++ +V AGL A+A + + SEF+ + LG S Sbjct: 117 KRKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTS 176 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + + + F T + +LG LS+ L LS +R + +A + Sbjct: 177 RRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHL 236 Query: 125 EAKASAWIIGSLPFCVSTLV 144 + +A ++ + ++ Sbjct: 237 NPRVTAVTAATMLPGLLLII 256 >gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110] Length = 301 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ +IK R + ++FP+A D+++ V AGL + A+ + + S+ + E Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + ++E+ F+T+++ + G ++ E+L S LR ++ ++A Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + C+S ++ +P + ++ Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI--LTPAAIRIV 290 >gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 306 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 73/183 (39%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +++ + P +D +R + AG + ++ + + R+ Sbjct: 119 RFRFQQQRRAIFESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVFQPLTFRLRSAVES 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + + S + ++ G ++ L ++ LR ++ ++ + A Sbjct: 179 GRDYTGLFDDFARLYRVPSLVLVSIALRTSARFGSSIRPVLQQVANSLRSQQELRREFLA 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E + +A LP ++ + + Y +VL+ GH +L +A IG++++ Sbjct: 239 STAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVVIIWR 298 Query: 182 MIN 184 M+ Sbjct: 299 MVQ 301 >gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264] gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 296 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 131 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 190 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 191 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 250 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 251 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 288 >gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + QA AK + +I + C+ S + P + V+ Sbjct: 278 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313 >gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM 8797] Length = 308 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ LIK R + P+ALD++V V AGL + A+ + + V SEF Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + ++ + ++ + G ++++AL S +R +++ A Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + QA K + LV F PG VL +G AA M+ G++ Sbjct: 267 EEQAAMTAVKM-----------IFPLVLFIFPGIFVVL---------VGPAAIMMINGLL 306 >gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 287 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L KKR A + P LD + S+ AGL ++ A++ V + P+R EF +VI Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++S M + + E++ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +AL K +I + ++ F P M + Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286 >gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 307 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + P+ +D++ SV AGL A+ + + + EF ++++ Sbjct: 150 LNKKILDRKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIK 209 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ + R + + ++S F+ + + QLG ++ L S +R ++ A+ Sbjct: 210 IGRPRLEALRDLSRRLDVDDLSAFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEM 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A+ K + +V F P VL+ + Sbjct: 270 AMKAPVKM-----------LIPMVLFIFPAIFVVLLGPAVIQI 301 >gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 302 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIE 57 + H I R K + P+ALD++V V AGL ++ A+ + ++P + EF + Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL +++ + ++E+S ++ + G ++++AL S +R + + Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRVQSDTMRTNRRQRL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + A+ ++ L + + Sbjct: 261 EE----LAARTPVKLVFPLILFIFPALVVV 286 >gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 313 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 268 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 305 >gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243] gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b] gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91] gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210] gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894] gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112] gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215] gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Burkholderia pseudomallei 1710b] gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 319 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FST++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311 >gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 303 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 77/175 (44%), Gaps = 11/175 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTDEIRIKSEALAEELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + + E+ F+ +++ + G ++ E+L S LR ++ M+A Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + A + K ++ + + ++ P + ++ M+L + M Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--IMVVLGPAIIRIV------RMILPMMGGSM 303 >gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 313 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 72/167 (43%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + ++R + + P+ ++++V AG+ + A I + + + EF Sbjct: 152 LRFITQRRIERMRNGLPDMIELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSL 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ M + L+E+ +V+ + G +L+++L S ++R R++ +A Sbjct: 212 EMRAGATRLDALRNMALRVGLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRA 271 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + A + K + L+ F P + VL+ +L Sbjct: 272 EELANKVPVKM-----------LLPLILFIFPTLLMVLLGPAIIQLL 307 >gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 319 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 7/159 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K R + P+ LD + +++AG+P+ A+ +V P+ E +R Sbjct: 156 INMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELE 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ E+ R+V +E+ + S+LG ++ ++ +R + K K + Sbjct: 216 LGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEK 275 Query: 121 ALSMEAKA----SAWIIGSLPFCVSTLVYFT---SPGYM 152 A K S I + + L+ +P ++ Sbjct: 276 AAKASPKVTLVTSFIITPGVMLAILGLIVLNIIYNPQFI 314 >gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 324 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R ++FP+ +D++ V AGL + A+ + + + + E + ++ Sbjct: 157 LARKVAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312 >gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273] gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273] Length = 313 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + ++R + + P+ +D++V +G+ + A+A I + + + EF + Sbjct: 153 LRFITQQRHERMRNSLPDMIDLMVVCTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + L++++ T+ + G ++E+L S +LR R+ +A Sbjct: 213 EIRAGATRIEALRNLALRTNLKDMNDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + A + K + LV F P + VL+ ++ Sbjct: 273 EEMAAKIPVKMT-----------IPLVLFIFPTLLMVLLGPAIIQIM 308 >gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str. Hildenborough] gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 284 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + IK+R + ++ P+ALD++V V AG+ + A+A + + +S + E + I Sbjct: 121 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 180 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + + +++V+ T+I G +++ L S +R + +A Sbjct: 181 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 240 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155 + + AK ++ L FC+ ++ P ++ ++ Sbjct: 241 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 276 >gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Cupriavidus metallidurans CH34] Length = 323 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + R ++FP+ +D++ V AGL + A+ + + + + E + ++ Sbjct: 157 LSRKVTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPTLLLVLLGPAFIQIY 312 >gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 318 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M+ L++ R K +D P+ALD++ V AGL + A+ + + S ++ EF V+ Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + QA + K + L++F P + VL+ ++ Sbjct: 270 EEQAAKIALKL-----------LFPLMFFIFPTLLAVLVGPSAIQIV 305 >gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7] Length = 240 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55 + K R +F +A ++ S AG + A+ S + EF R+ Sbjct: 49 RMREKSRKQMLWHEFKDAAAMLYSSTAAGGTLEKALRDTCCDMKTSDSSYQVLLPEFERI 108 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 SL + +++++F V++V + GG+LS + + + + R + Sbjct: 109 CMHLDQNRSLESVLEDFAVRSEDEDIAYFVRVLTVARKSGGSLSSIIRHTADTMNLRMEI 168 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++++ + + I+ +P + + S YMN+L G +++ A Sbjct: 169 NSEIETILAGKRGEWRIMLIVPPGILCYMNMCSSEYMNILYTGLTGRLVMTAALMVYAAA 228 Query: 176 IMVMRLMINFDV 187 + +++ V Sbjct: 229 LWTGHKILDIHV 240 >gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7] gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7] Length = 315 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58 + + + + +F ++ I + G + +A+ I+ + +S + +E V + Sbjct: 128 VNKRAETKKEELTLEFLEKINEISAHLSVGKTIPNALDEIIKEQNTSQVLINELITVKQN 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +LG LS+S ++ ++E+ F+ +SV + GGN+ E L + + +K Sbjct: 188 LNLGYPLSKSFMLAYEHLQIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNT 247 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + K S + +P LV F +P + G ++ +A +F+L GI + Sbjct: 248 QKVYISSLKTSQKLTVGIPLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307 Query: 179 MRLMINFD 186 + Sbjct: 308 SNKIAKLK 315 >gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 322 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +R + + FP+ALD+++ V AGL + A+ + + S V + +V+ Sbjct: 162 ASRRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRA 221 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 222 GRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKA 281 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF 146 + S ++ + + ++ Sbjct: 282 HRLPVLLSVPLVACMLPVMIGVLML 306 >gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH] Length = 319 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311 >gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 313 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 268 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 305 >gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 323 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + IK+R + ++ P+ALD++V V AG+ + A+A + + +S + E + I Sbjct: 160 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + + +++V+ T+I G +++ L S +R + +A Sbjct: 220 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155 + + AK ++ L FC+ ++ P ++ ++ Sbjct: 280 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 315 >gi|302335343|ref|YP_003800550.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] gi|301319183|gb|ADK67670.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] Length = 312 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R + P + ++ +G +S AV + V F R H G Sbjct: 130 LESRRRRAIEREMPAVFRTLAMAMGSGETLSQAVDYLAAHGGGEVAKAFTRTSLRMHCGY 189 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ES+ + R + V T + + + G L +R++ + + + + Sbjct: 190 PARESLDLLARELDAPGVGLLVTALLISQRTGSPLRSLFRRSARLVERQGEFERMLGVKT 249 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + S ++ LP + L+ S + L + P G + AA I+++R ++ Sbjct: 250 AQVRLSVRVVSGLPVIMIALLSLISSDFQRGL-STPVGAACILAAALMDGAAILIIRRLM 308 Query: 184 N 184 Sbjct: 309 R 309 >gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668] Length = 319 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311 >gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4] gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264] Length = 319 Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ V AGL + A+ + + S V E ++ Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++V FS ++ + G ++ +L LS LR ++ M+A Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311 >gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 61/128 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R K L D P LD+I SV AGL A+A ++ + EF + ++ Sbjct: 148 LSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEIT 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++ M ++E+S F + + +LG +LS+ L S LR+ + ++ + Sbjct: 208 MGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREK 267 Query: 121 ALSMEAKA 128 A+ K Sbjct: 268 AMKAPIKM 275 >gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44] Length = 303 Score = 100 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 68/148 (45%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + + E+ F+ +++ + G ++ E+L S LR ++ M+A Sbjct: 197 EMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + A + K ++ + + +V Sbjct: 257 EELAAKIPTKMLFPLVTCIFPAIIMVVL 284 >gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 318 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +L +R + P+ALD++V V AGL + A I + + EF Sbjct: 157 LGYLKSRRQEQIFLTLPDALDLMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANF 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + ++ + V+ + G +++ AL S +R ++ A Sbjct: 217 QIRMGRPRREVLRDLGVRTGVADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A K + LV F PG VL+ Sbjct: 277 EEKAAKTAVKL-----------LFPLVLFIFPGIFVVLVG 305 >gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 326 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR + + LD++V + G+ + A++ + + P + +E V+ Sbjct: 155 LAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVLR 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S+ +++ + L+E+ +T + + G +++A+ LS +LR ++ +A Sbjct: 215 EVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETRA 274 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A K I L + V P + + Sbjct: 275 EERAQKASVKI--LIPTLLFIFPTVFVVLAGPAAIQI 309 >gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] Length = 314 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 7/164 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ KR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 154 LSMMVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ + +++ L E++ T+++ S++GG+LS+ L + RD++N + Sbjct: 214 KISAGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEI 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + A + K ++ + C + P + L G Sbjct: 274 EEIAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTSTMG 313 >gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 323 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70 D FP++LD+++ V AG + ++ + + + E++ V + G + ++ Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M +Q++S F TV+ G ++ +AL + +RD++ M+A+ +A + K + Sbjct: 232 EMGDRCGVQDISSFVTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTL 291 Query: 131 WIIGS-LPFCVSTLVYFTSPGYMNVLI 156 +G +P + LV + G M+++ Sbjct: 292 CTMGLTVPPLLIILVGPSVLGIMDLMT 318 >gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380] Length = 326 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + +++ R + + P+ALD++V V AGL + + + + EF Sbjct: 162 LGFVVRSRQNRIMRALPDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNL 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +E M + EVS T++ S+ G +L++AL S +R ++ A Sbjct: 222 EIRAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIA 281 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 + +A AK++ +I L F + ++ PG + ++ Sbjct: 282 EEKA----AKSTVKLIFPLVFFIFPAIFVVLVGPGVIRII 317 >gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 285 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR+A +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S++++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L L+ +M Sbjct: 214 EARQSWTINAARLAVAAPWIVMILL-ATRPEAVQA-YNTAAGAAVLVGGLVVSLVCYSIM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] Length = 291 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + L ++R + L +FP LD+ V AGL + A+ D P+R E R + Sbjct: 134 LHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADM 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +++ + L V T ++ QLG +L L + S R + ++A+ Sbjct: 194 RAGVPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEK 253 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 AL K ++ + C ++ F Sbjct: 254 LALEAPVKMLFPMVFCIFPCTFLIIGF 280 >gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 324 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R ++FP+ +D++ V AGL + A+ + + + + E + ++ Sbjct: 157 LARKVSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++++ + +++V F++++ + G +L E+L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312 >gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++HL +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++ L S RD++ A Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + QA AK + +I + C+ S + P + V+ Sbjct: 280 EEQA----AKLAVKMIFPMMLCIWPSFFIVAVGPAVLKVM 315 >gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 303 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 7/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60 KR F + LD + SV +G A + E +++ Q Sbjct: 118 KRRNDIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIVQELTLILDGQK 177 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S S+ + ++E+ F+ V + + GG+ S+ + + IL + N++ +++ Sbjct: 178 NFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRDSYEILYSKINIEMEIE 237 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + I+ ++PF + ++ SP P G + + V ++I ++ R Sbjct: 238 TKIAATRNELNIMLAMPFILVGMMKSMSPD-FAYNFRTPTGALGITVGLVIVVISYLLGR 296 Query: 181 LMINFDV 187 + + +V Sbjct: 297 KITSIEV 303 >gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 322 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L ++ ++ IS +LG ++ L S RD++ +A Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA + K L S + P + V+ Sbjct: 280 EEQAAKLAVKM--IFPMMLGIWPSFFIVAVGPAVLKVM 315 >gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469] gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469] Length = 272 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 72/182 (39%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H + + P+ I ++ +GL +S ++ + + V F G Sbjct: 88 HAKHQSALEIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKHTEGVVSESFCIADMQIKCG 147 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E+I + + V+ ++ + + + G L L + ++ ++ + + Sbjct: 148 FPIEEAIEDLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAELVELQEKNQRLIATK 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + SA I+ LP + ++ SP + L P G + +A I ++++R + Sbjct: 208 TAQVRLSARIVCLLPVVLLIILSLVSPDFQKGLF-TPSGVICTVIAMIMDCIALLIIRSI 266 Query: 183 IN 184 + Sbjct: 267 MK 268 >gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 296 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + +KKR P +LD++ SV AGL + A+A +V + P+R E + V++ Sbjct: 137 LNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQL 196 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G + E + M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 197 KMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A K +I + V +++ P + + G Sbjct: 257 LAGEAPVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVAG 296 >gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 99.8 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 14/166 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + HL R + P+ALD++V V +GL + A+ + + + EF Sbjct: 157 LYHLRSTRQKEIFLTLPDALDLLVVCVESGLGLDAALRKVTDEMKGHAKTICEEFSLANL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E + + + +V + ++ + G ++++AL S +R R+ A Sbjct: 217 QLQMGRPRREVLHDLGVRTGVDDVRSLAAILIQADRFGSSIAQALRVQSDSMRVRRRQIA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + + LV F P VL+ + Sbjct: 277 EEKAAKTAVQL-----------IFPLVLFIFPSIFVVLVGPAAIQI 311 >gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related transmembraneprotein [Moritella sp. PE36] Length = 325 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K + K+R A FP+ALD+++ +GL + ++ + + + E V Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+L +++ L+++ ++VI +LG ++ + S R+++ A Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + A AK +I + C+ S + P + V+ Sbjct: 283 EENA----AKLGVKMIFPMMCCIWPSFFIVAIGPAVLKVM 318 >gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L+ P+ALD++ + AGL +A+ I + ++ + EF RV+ Sbjct: 151 LSRRIGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMS 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ M + +++ F + I LG ++ L + +R R+ +A+ + Sbjct: 211 MGVPRRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQER 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A K + LV+ P VL+ +L Sbjct: 271 ANQAPVKM-----------MFPLVFLIFPAIFAVLLGPAVPQLLEAFGGI 309 >gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911] Length = 312 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 62/145 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR + D P+ LD + S++AG + A+ ++ S P++ EF ++ Sbjct: 148 VRSKAKKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEID 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ ++ +E F + ++LG ++ L + + +R + K + Sbjct: 208 LGVPREKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEK 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K + + + L+ Sbjct: 268 AAKASPKVTMITSFIIAPLIMLLII 292 >gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 296 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ A Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEKLAGE 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 K +I + V +++ P + + G Sbjct: 261 APVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVGG 296 >gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM 3645] gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM 3645] Length = 288 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++R + + P+ +D++V + G+ ++A++ + + + + E V Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+SL +S RM ++EV ST + + G + EA+ LS +LR ++ +A Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A K I L + V P + + Sbjct: 235 EERAQQASVKI--LIPTLLFIFPTIFVVLAGPAAIQI 269 >gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] Length = 313 Score = 99.4 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + IK R + FP++LD+I+ V AGL + A+ +V + + E+ + Sbjct: 149 LAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GLS +++ + +VS ++ + G +++ +L S +LR ++ M A Sbjct: 209 ELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A AK I+ L FC+ +Y Sbjct: 269 EERA----AKIGTKILFPLIFCIFPSIYVV 294 >gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437] Length = 306 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR + + P+ +D++ +++AG+ + A+ V ++ P+ E R+ + Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ E+ + LG +SE A + +R+ + KAK Q Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A E K SA + + LV+ + D Sbjct: 263 AGKSEPKISAVAGLVITPSIMLLVFGAF--ILKFFFTD 298 >gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 314 Score = 99.0 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + D P+ ++ ++ AG S A+A + F++ G Sbjct: 128 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 187 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+SE ++ M + V F T + + + G L ++++ ++ K + Sbjct: 188 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 247 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ S ++ SLP + +++ S + + P G + LG+AA I +M++R + Sbjct: 248 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGI-TRPAGLISLGIAAFLDFIALMIIRSL 306 Query: 183 IN 184 + Sbjct: 307 LK 308 >gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 295 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 6/151 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + LD + +V AGL A+A P+ E R ++ +G Sbjct: 143 QERQQAIALELADTLDQMTIAVEAGLGFEAAMARAGRNGRGPLAEELVRTLQDIAVGQPR 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ + + ++ F + G ++++ L + +R ++ +A+ +A+ + Sbjct: 203 REAYLALAERTAVPDLRRFIRAVVQADAYGVSIADVLRTQAAEMRLKRRQRAEEKAMQIP 262 Query: 126 AKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154 K +I L C+ + P +++ Sbjct: 263 VK----VIFPLILCILPTLFIVLLGPAVLDI 289 >gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] Length = 238 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 83 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ A Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEKLAGE 202 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 K +I + V +++ P + + G Sbjct: 203 APVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVGG 238 >gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 324 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 ++ R D P+ALD++V V AG+ + A+ + + SS + E ++ Sbjct: 166 VRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELRA 225 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + SES+ + + L++V+ T+I G +++ L S +R + +A+ Sbjct: 226 GKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEE-- 283 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155 + AK ++ L FC+ ++ P + ++ Sbjct: 284 --IAAKMPVKLLFPLVFCILPALFVAIMGPAGIRLM 317 >gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 284 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KRTA +P+ +D + ++RAGL + +A+ + + + +R FR Sbjct: 93 VRWRARKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G +++R+ + + + ++GG +L L L LR+ ++++ Sbjct: 153 AGGQFDPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L I VM Sbjct: 213 EARQSWTVNAARLAVAAPWIVMVLL-ATRPEAVAA-YNTATGAAVLLGGLVVSTICYSVM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 322 Score = 99.0 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGL 63 +R + FP+ALD+++ V AGL + A+ + + S V + +V+ G Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKAHR 283 Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146 + S ++ + + ++ Sbjct: 284 LPVLLSVPLVACMLPVMIGVLML 306 >gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147] gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786] Length = 318 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 9/162 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R ++DFP+ALD++ + AGL + + + + S V E ++ Sbjct: 153 LSRRIASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S ++ + +++ FS ++ + G ++ +L LS LR ++ M+A Sbjct: 213 EMRSGFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 + +A AK + ++ L FC+ + P ++++ Sbjct: 273 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 310 >gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 303 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + +R + ++FP+A D+++ V AG+ + A+ + + S+ + E Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + + E+ F+ +++ + G ++ +++ S LR ++ M+A Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A + K ++ + + ++ P + +L Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--VMVVLGPAIIRLL 292 >gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] Length = 298 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ L +RT + P LDII ++ AG ++ A+ V + P+ E RRV+ Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ + + + +S + I + G +L L + R+ + M+A+ Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 AL K ++ + C +V+F Sbjct: 260 MALKAPVKMLFPLMICIFPCTFIIVFF 286 >gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 292 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 66/151 (43%), Gaps = 6/151 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + PN LD ++ SV AGL A+A G + E R ++ +G Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +Q++ F + + G +++ L ++ R ++ +A+ +A+ + Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261 Query: 127 KASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 K ++ L C+ +++ P + ++ Sbjct: 262 K----VLFPLLLCIFPVLFIVLLGPAAIKIV 288 >gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] Length = 296 Score = 98.6 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L + + D P+ ++ ++ AG S A+A + F++ G Sbjct: 110 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 169 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S+SE ++ M + V F T + + + G L ++++ ++ K + Sbjct: 170 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 229 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ S ++ SLP + +++ S + + P G + LG+AA I +M++R + Sbjct: 230 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGI-TRPAGLISLGIAAFLDFIALMIIRSL 288 Query: 183 IN 184 + Sbjct: 289 LK 290 >gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 287 Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 2/157 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + L + R + + P LD + ++ AGL +S A+A V + D P++ EF +VI Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + E++ + ++ + G +L L + R + +A+ Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250 Query: 120 QALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A+ K I+ P L++ ++ + Sbjct: 251 KAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287 >gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 293 Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 71/157 (45%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R + P+ LD ++ +V AGL A+A + P+ +E R ++ Sbjct: 137 LQSRGQERQKLIGLELPDTLDQMMIAVEAGLGFDSAMARAGDKGKGPLANELVRTLQDMQ 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+ + + ++ F + G ++S+ L + +R ++ +A+ + Sbjct: 197 IGRSRREAYEALGERTSVPDLDAFIRSVVQADIYGISISKVLRTQAGEIRLKRRQRAEEK 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 A+ + K +I L C+ +++ P +NV+ Sbjct: 257 AMQIPVK----VIIPLMLCILPVLFIALLGPAVLNVI 289 >gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 329 Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 14/165 (8%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQ 59 L +KR P+ALD++V V AGL + A+ + + + EF Sbjct: 165 WLGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQL 224 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G ++ + + + ++ S+++ + G ++++AL S +R R+ A+ Sbjct: 225 QMGRGRTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEE 284 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +A K + LV F PG VL+ M+ Sbjct: 285 KAAKTAVKL-----------IFPLVLFIFPGIFVVLVGPAAITMV 318 >gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 326 Score = 98.2 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 67/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +R + L+ FP+ LD+++ V AG+ + A+ + + V + + Sbjct: 160 LTAKADRRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + E+ F+T++ +LG +++ L + +R+++ M+A Sbjct: 220 ELRAGASREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +A + S ++ + + ++ Sbjct: 280 EEKAHRLPVLLSIPLVACMLPVMIGVLML 308 >gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC 51196] Length = 299 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 67/159 (42%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +K R + P+A+D++V V AGL + A+ + + S + EF ++ Sbjct: 136 LERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRVGQELAVSHPEINEEFLQINR 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 Q G ++ L E+ F +++ + G ++ AL S +R ++ A Sbjct: 196 EQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIA 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154 + +A AK + ++ L + + P ++ + Sbjct: 256 EEKA----AKTTVKMLFPLVLFIFPCIFIVLLGPAFITI 290 >gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 306 Score = 97.8 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ R + P+ALD++V V AGL + A+ + + + + E R V Sbjct: 140 LRSRVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + RM E+ S ++ G ++ AL + +R R+ +A Sbjct: 200 EVKAGIPRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K S ++ + CV +V Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVL 287 >gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 285 Score = 97.8 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 75/191 (39%), Gaps = 7/191 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55 K L KKR + F L+ + ++ +G+ ++D++ + + E + Sbjct: 95 KMLQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEM 154 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + I + +++ F+TV +V + GGN+ + + + I+ ++ + Sbjct: 155 ISGMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEI 214 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ K + +P + ++ G + P G + A ++ Sbjct: 215 SGEIATAISSNKLQFNAMMVIPVFLILMLRAMG-GNFAKSFSTPLGVIATTFALGIFVLA 273 Query: 176 IMVMRLMINFD 186 ++ + +++ Sbjct: 274 FLLGQKIMDIK 284 >gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 312 Score = 97.8 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +LI KR P+ LD++V V AGL + + + + ++ + E Sbjct: 150 LAYLISKRKQAIFLQLPDVLDLLVVCVEAGLGLDAGLRRVAEELKDTAPEICGELAMCNL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + + + + + +V ++ + G ++++AL S +R ++ A Sbjct: 210 QLQMGRNRRDMLHDLGVRTGVDDVKALVAIMIQADKFGSSIAQALRVQSDSMRVKRRQIA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + +A + + +V F PG VL+ M+ Sbjct: 270 EEKAQKTAVQM-----------LFPMVIFIFPGIFVVLVGPAAIKMM 305 >gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 296 Score = 97.5 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 61/155 (39%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R A + LD + +V AGL A+ P+ EF R ++ Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + + F + + G ++E L + +R ++ A+ + Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ + K ++ + + ++ P +N++ Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVI--LGPAVINMM 290 >gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 318 Score = 97.5 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M L++ R K +D P+ALD++ V AGL + A+ + + S ++ EF V+ Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + A + K + L++F P + VL+ ++ Sbjct: 270 EELAAEIALKL-----------LFPLMFFIFPTLLAVLVGPSAIQIV 305 >gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein [Shewanella sediminis HAW-EB3] gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella sediminis HAW-EB3] Length = 321 Score = 97.5 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ + +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ +++ L+++ ++ IS +LG ++E L S R+++ +A Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + QA AK + +I + C+ S + P + V+ Sbjct: 279 EEQA----AKLAVKMIFPMMLCIWPSFFIVAIGPAVLKVM 314 >gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 320 Score = 97.5 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +++R ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 163 LSQKVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A ++ AK S ++ + V + Sbjct: 283 EEKAHALPAKMSVPVVVCILPVVLMI 308 >gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 309 Score = 97.5 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 11/170 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L+ P+ALD++ + AGL A+ I + ++ + EF RV+ Sbjct: 151 LSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMS 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ ++++ M + +++ F + + LG ++ L + +R R+ +A+ + Sbjct: 211 MGVPRRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVLTVQADEMRTRRRQRAQER 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A K + LV+ P VL+ +L Sbjct: 271 ANQAPVKM-----------MFPLVFLIFPAIFAVLLGPAVPQLLEAFGGV 309 >gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876] Length = 261 Score = 97.1 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 84/191 (43%), Gaps = 7/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVI 56 +++K R + F + + + S+ AG + ++ + Q D F++++ Sbjct: 72 YIVKCREKQI-ASFKDGIRFVNNSMHAGYSIENSFKEALIQMEQVYGKDDDTYKGFKKIV 130 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L + + ++ + +E+ F+ ++ + GGN+S + N + I+ ++ ++K Sbjct: 131 GRIMLNIPIEQAFYQYAVESGTEEILDFAEILKFAKRSGGNMSHIINNTANIITEKISLK 190 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ + K I+ ++P + + +S G + L + G +++ V +I + Sbjct: 191 QEISTVIAGKKFEQMILSAVPAGIILYMRVSSFGTIEKLYGNMFGIIVMSVCLFIYIISV 250 Query: 177 MVMRLMINFDV 187 ++ + + + Sbjct: 251 IIASRISSIKI 261 >gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1] Length = 333 Score = 97.1 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+ KRT + P+ALD++V AGL V A + + + EF Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLNERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A + A + I+ LP ++ Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318 >gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 295 Score = 97.1 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + S P E R + Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S E+ ++ + ++VS F + + +LG + + L ++ +R A+ + Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A KA+ + + L+ Sbjct: 254 AAKAVPKATLIVTSFMLPGTMILIAV 279 >gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 97.1 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 8/191 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRVI 56 L +R L F + L+ + S G A G +D E ++ Sbjct: 87 FLKARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVHEIEMIV 146 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + G ++ + L +V F+T+ V S+ GGNL +A+ + RI+ ++ M+ Sbjct: 147 NGIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEME 206 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +++ L K I+ +P + + G M+++ N P + +A A Sbjct: 207 MEIRTLLTANKNELNIMMLMPLIIMVTLSGM--GSMSIVQNTPLNVLTKVIALALFGTAY 264 Query: 177 MVMRLMINFDV 187 + R +I+ + Sbjct: 265 YIGRKIIDIKI 275 >gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 296 Score = 97.1 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 61/155 (39%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R A + LD + +V AGL A+ P+ EF R ++ Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S + + + F + + G ++E L + +R ++ A+ + Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ + K ++ + + ++ P +N++ Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVI--LGPAVINMM 290 >gi|303233387|ref|ZP_07320056.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] gi|302480516|gb|EFL43607.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] Length = 317 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 73/183 (39%), Gaps = 1/183 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++ + K + P+ I+ + +G ++ A+A + F++ Sbjct: 127 NYIVHAKRDKVAHEMPDVFRILGMGLSSGQTLTQAIAYVGIHKKGEAGHAFQQASLQLRC 186 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + V F T +++ + G L ++++ ++ K ++ Sbjct: 187 GAGITDVLKGIAAMLHAPGVKFLVTALAISQRTGSPLRNLFRQSAKLVEQQEQFKRLLRV 246 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + S ++ SLP + ++ S + L P G L AA + + ++ Sbjct: 247 KTAQVRLSVRVVASLPVVLICILSVLSVDFQKGL-TRPLGVGCLICAAVLNAVALFIITQ 305 Query: 182 MIN 184 ++ Sbjct: 306 LMK 308 >gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum DSM 15272] Length = 298 Score = 97.1 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R A + P+ALD IV S+ +GL A+ E R ++ Sbjct: 140 LSSRARERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQ 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + +V +++ F + + G ++S + N S +R ++ ++A+ + Sbjct: 200 VGMPRRAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYM 152 A + S ++ L FC+ +++ +PG M Sbjct: 260 A----QQVSVKLLFPLIFCLFPVLFVIVLAPGVM 289 >gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 294 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + N LD ++ SV AGL A+A + P+ E R ++ +G S Sbjct: 141 QERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNGNGPLAEELVRTLQDMQVGRSR 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES + + + E+ F + G +S L ++++R ++ +A+ +A+ Sbjct: 201 RESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAKVMRVKRRQRAEEKAM--- 257 Query: 126 AKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 K I+ L F + +++ P +N ++ Sbjct: 258 -KLPVMILFPLLFFIFPVLFIAILGPAVINTVVT 290 >gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 285 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKRTA +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S+ ++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + N G +L L M Sbjct: 214 EARQSWTVNAARLAVAAPWIVMLLL-ATRPEAVQA-YNTAIGAAVLLGGLVISLACYSTM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC 49989] gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC 49989] Length = 250 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 83/192 (43%), Gaps = 7/192 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--VIVGQS----SDPVRSEFRRVI 56 H++ R AK L F + L + S + +A+ IV + + E + Sbjct: 59 HMLDVRQAKMLSQFQDLLHSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMH 118 Query: 57 ETQHLGLSLS-ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + E + ++++ F+ S + GGN+ +A+ + ++ ++ ++ Sbjct: 119 RSIAENNVVDTEVWDDFAKRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISI 178 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +++A++ + K II +P V TL+ + Y+ + G +++GVA +++ Sbjct: 179 SKEIKAITNQKKVEGRIILIMPIVVLTLLNLFAYDYIAPMYTSSSGRVMMGVALGLLIVA 238 Query: 176 IMVMRLMINFDV 187 + ++ + V Sbjct: 239 VYMVEKITRIRV 250 >gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans Sphe3] Length = 294 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + N LD ++ SV AGL A+A P+ E R ++ +G S Sbjct: 141 KERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQVGRSR 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ + + E+ F I G +S L ++++R ++ +A+ +A+ Sbjct: 201 REAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEKAM--- 257 Query: 126 AKASAWIIGSLPFCVSTLVYF 146 K I+ L F + +++ Sbjct: 258 -KLPVMILFPLLFFIFPVLFI 277 >gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS] gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS] Length = 312 Score = 96.7 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 M + KKR + + P+ ++++V +G+ + A+A I + + EF Sbjct: 151 MDFITKKRVERMRNSLPDMIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ M L E+ +++ + G +++E+L S ++R ++ +A Sbjct: 211 EMRAGATRIDSLRNMALRTSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + + AK ++ L + L+ P + ++ Sbjct: 271 EE----LAAKIPVKLVLPLGLFIFPTLLIVMLGPAILQLI 306 >gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 314 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 67/158 (42%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I R + P+ALD++V V AGL + A+ + G+ + + SE R Sbjct: 148 LSSRIANRLRQIDRALPDALDLLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + R+ E+ + ++ G +++ AL + +R R+ +A Sbjct: 208 EVRAGIPRMDGFRRLAARTGSPELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + +I + + ++ P +N++ Sbjct: 268 EERAAYVAVKMTLPLILCILPSLFAVI--IGPAAINIM 303 >gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 333 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +++R A F+ P+ D++V + +GL + ++ + + + +E RV Sbjct: 158 LDRAVRRRQATFMKAIPDLFDLLVTCLSSGLTIEASIKRVAEELRLAHPDLANELARVQN 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 HLG+S+ +++ L + + + Q G EAL + ++R ++ +A Sbjct: 218 EIHLGISVVDALKHFAERCNLNPIRSLAMMCEQTRQYGTRAIEALRVHANMMRTQREQRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A K A + + V +V Sbjct: 278 EERARKAAVKILAPTVLLIFPSVFVVV 304 >gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 306 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ ++ R + P+ALD++V V AGL + A+ + + + + E R V Sbjct: 140 LRARVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ + RM E+ S ++ G ++ AL + +R R+ +A Sbjct: 200 EVKAGIARISAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + +A + K S ++ + CV +V Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVL 287 >gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 330 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+LI KR P+ALD++V AGL V A + + S + EF Sbjct: 170 VKNLITKRQQAIRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAI 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + + L + T + + G L+ AL LS R + M+A Sbjct: 230 ELGFLTDRRQAFENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A + A + I+ LP ++ Sbjct: 290 EEKAARLPAIMTVPLIMFILPVLFIVIL 317 >gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + + P E R + Sbjct: 135 LRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQMD 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ E+ ++ R ++VS F + + +LG + + L ++ +R A+ + Sbjct: 195 MGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A KA+ + + L+ Sbjct: 255 AAKAVPKATLIVTSFMLPGTMILI 278 >gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T] Length = 301 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + I+ R L P LD+I V AGL ++ A+ + P+ E RV+ Sbjct: 144 LDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAKGPAGPLGEELHRVLRDV 203 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S ++++ + ++ + + +G +L L R + +A+ Sbjct: 204 RAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERFARAEK 263 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +I + C ++ F Sbjct: 264 AAMEAPVKMLLPLIACIFPCTFIVLGF 290 >gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 310 Score = 96.3 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + ++I KR P+ALD++V V +GL + + + + SD + +EF Sbjct: 149 LAYVISKRKQAIFLTMPDALDLLVVCVESGLGLDQGMNRVTAELSDTAPEICAEFSLCNF 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + E + + + ++ + ++ + G ++++AL S +R ++ A Sbjct: 209 QLQMGRNRREVLHDLGVRTGVDDMKALAAILIQADRFGSSIAQALRVQSDSMRVKRMQIA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + +A + + LV F PG VL+ M+ Sbjct: 269 EEKAQKTAVQM-----------IFPLVLFIFPGIFVVLVGPAAISMM 304 >gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 284 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V ++ T P + + N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVL-MLMATQPA-VRNIYNSFAGFVLMFAGAGLSVIAYRIM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 316 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + + R + + P+ LD++V +G+ + A+A I + + + EF Sbjct: 152 LRFITQNRIERMRNSLPDMLDLMVVCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTL 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + L ++ +V+ + G +L ++L S ++R + +A Sbjct: 212 EMRAGANRIDALRNLALRSRLDDLQNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRA 271 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + A + K + ++ P + L+ Sbjct: 272 EELAAKIPVKMTLPLVLFIFPVLMLVLL 299 >gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 295 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P+ LD++ V AGL A+ + + P E R + +G+S + Sbjct: 141 RKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQ 200 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + R ++V+ F T + +LG + E L ++ +R A+ +A K Sbjct: 201 AFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPK 260 Query: 128 ASAWIIGSLPFCVSTLV 144 A+ I + L+ Sbjct: 261 ATMVITTLMVPATMILL 277 >gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649] Length = 289 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+A+D I +VRAG+ + +AVA + + + +R F+ + + + + R+ Sbjct: 113 WPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLKER 172 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++GG +L L LS LR+ +++++ +A + Sbjct: 173 LSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARLAV 232 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ T P + + G ++L A + VM + Sbjct: 233 AAPWIVLAMLS-TRPESVQA-YSTGTGALILFFGAVMTAVAYWVMVRIGRL 281 >gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ I++R + FP++LD+I+ V AGL + AV +V + + E+ + Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTL 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + +A AK I+ L FC+ V P + V+ Sbjct: 269 EERA----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 301 Score = 95.9 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 12/169 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR L P+ALD++ SV AGL A+ + + + + EFRR + Sbjct: 145 LGRQIKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIR 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+ M +++++ F + + QLG ++ + L S LR R+ +A+ + Sbjct: 205 LGTQRHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEE 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 A K + LV+ P V++ P LLG Sbjct: 265 AQKAPIKM-----------LFPLVFLIFPSMFVVILG-PAIPRLLGGGL 301 >gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 284 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V ++ T P + + N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVL-MLMATQPA-VRNIYNSFAGFVLMFAGAGLSVIAYRIM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 310 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + P+ALD++ SV AGL A+ + QS+ + EF +++ H Sbjct: 153 LNARIRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECH 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G E++ M + + ++S F I + LG ++ L S+ +R ++ + + Sbjct: 213 MGKPRREALRDMADRVDVDDLSTFCGSIILADTLGISIGNILRTQSQQIRQKRRQRTEEL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ K L + V P + ++ Sbjct: 273 AMKAPIKM--LFPMVLFIFPAIFVILLGPAALQIM 305 >gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CMR15] Length = 315 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + IK R + + FP++LD+I+ V AGL + A+ +V + + E+ + Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL +++ + + +VS ++ + G +++++L S +LR +++M A Sbjct: 211 ELRAGLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A AK ++ L FC+ +Y Sbjct: 271 EERA----AKIGTKVLFPLIFCIFPSLYVV 296 >gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 320 Score = 95.5 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ R ++FP+ LD++ V AGL + A+ + + + + E + Sbjct: 153 LARKVEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLL 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++++ + +++V F++++ + G +L+++L LS +LR ++ M+A Sbjct: 213 ELRSGFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRA 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + QA AK + ++ L F + L+ P ++ + Sbjct: 273 EEQA----AKIALKLLFPLIFFIFPTLLLVLLGPAFIQIY 308 >gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599] gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 311 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 59/151 (39%), Gaps = 3/151 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + R + D P LD + +++AG+ + A+ ++ P+R EF R + Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ ++ +++R E + +LG ++ + +R + K + Sbjct: 208 LGVQREKAYEQLLRRNDNPEFQMLIKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEK 267 Query: 121 ALSMEAK---ASAWIIGSLPFCVSTLVYFTS 148 A K + +I+ + + + Sbjct: 268 AAKASPKVTLITTFIVTPTAIILIGGLMVLN 298 >gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 309 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IKKR P+ALD++ SV AGL A+ + + D + EF++V+ Sbjct: 152 LGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E++ + + +V F+ + QLG ++S+ L S +R R+ +A+ Sbjct: 212 LGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKILRLQSDQMRQRRRQRAEEA 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A K + +V+ P V++ ++ Sbjct: 272 AQQAPIKM-----------LFPMVFLIFPALFVVILGPAVPRIM 304 >gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 294 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 6/152 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + N LD ++ SV AGL A+A P+ E R ++ +G S E Sbjct: 143 RQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEEIIRTLQDMQVGRSRRE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S + + E+ F I G +S L ++++R ++ +A+ +A+ K Sbjct: 203 SYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMRVKRRQRAEEKAM----K 258 Query: 128 ASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157 I+ L F + +++ P +N ++ Sbjct: 259 LPVMILFPLLFFIFPVLFIAILGPAVINTVVT 290 >gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 303 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +R K P+ LD+I V AGL + A+ ++DP+ E + Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSMDAALIKTTETPQFANDPLAKEIKIATM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M + +V F T++S + G +LS+AL+ + LR ++ A Sbjct: 203 ETRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQMA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154 + AK + ++ L + LV P Y+ + Sbjct: 263 EE----AAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297 >gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 335 Score = 95.1 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +++L+ KRT P+ALD++V AGL V A + + + + EF Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLTERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A + A + I+ LP ++ Sbjct: 291 EEKAARLPAIMTIPLILFILPVLFIVIL 318 >gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 304 Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + R P+ LD++ V AGL + A+ + P+ +EF VI Sbjct: 144 LDRRAGVRKTAIFHALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVIL 203 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SE++ + L ++ +++ +LG +L + L S LR ++ A Sbjct: 204 EIRAGRPRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLA 263 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + +A AK + ++ L FCV +V P + + Sbjct: 264 EERA----AKTAVKMLFPLTFCVFPAFMVVLLVPAFFRIF 299 >gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 326 Score = 94.8 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I+KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 165 LQNTIEKRQKAIGRAWPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + + + G +++AL +S RD++ +A Sbjct: 225 ELSYLQDRRIAFENLGNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEA 284 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K + I+ LP + ++ M+V+ Sbjct: 285 EKKAASLPPKLTVPMIVFFLPVLFAVIMTPAILQIMDVM 323 >gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599] gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 94.8 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLS 64 +R F A+ ++ S+R A + S+ V E+RR++E + Sbjct: 112 RRKEDFEAGNVKAIRLMASSLRTSPSYLHAFEQVATSPFLSEIVLEEYRRIVELLRAQVP 171 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++R +V + +T++ +Q ++GG++++ L + + R+ + +A Sbjct: 172 LEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAMA 231 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + A ++ +PF +Y +P + + L G L+ + A +LIG +R Sbjct: 232 QIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFLILGSLASILIGGEAIR 287 >gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594] Length = 331 Score = 94.8 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+ KRT P+ALD++V AGL V A + + + EF Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 231 ELSFLTERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 290 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A + A + I+ LP ++ Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318 >gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter alkaliphilus HTCC2654] gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium HTCC2654] Length = 329 Score = 94.8 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 +K I+ R A+ FPNALD++ S AG+ A+ + S + EF Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++++ M M + EVS F+ V+S + G ++++AL + +R+ + MKA Sbjct: 229 EILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 +A + + S + + + + Sbjct: 289 IEKANRLPVQMSGVMSVMMLPALFLI 314 >gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4] gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4] Length = 300 Score = 94.8 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 65/155 (41%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R + + + LD + +V AGL A+A + P+ E R ++ Sbjct: 144 LQSRGQERNDEIALELADTLDQMTIAVEAGLGFDAAMARAGRNGTGPLAQELIRTLQEIQ 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + ++ + ++ F I G ++++ L + +R ++ +A+ + Sbjct: 204 VGQLRRTAYEQLALRTDVPDLRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEK 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K ++ + + ++ P +N++ Sbjct: 264 AQQVPVKVIFPLLVCILPVLFIVL--LGPTVINMM 296 >gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM 2246] Length = 307 Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + I+KR + P+ALDI+V SV G ++ A+ + D + +E V Sbjct: 147 LGARIEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQR 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LGLS+ ++ R + E + + + G ++ +AL + R + A Sbjct: 207 EVQLGLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKALRTFADSARQDRQAWA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + KAS ++ + C+ ++ Sbjct: 267 EE----VAQKASVKVVFPMLLCIFPAIFIV 292 >gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 318 Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R D+ P+ALD++V V +G+ + AV + + + SEF+ + Sbjct: 154 LSKKINRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + + L +++ ++++ G ++ L S +R +++ +A Sbjct: 214 ELRAGKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A M ++ + + + P + + Sbjct: 274 EEKAAKMPVLLLLPLVAFILPTLFVAI--LGPAVIMSM 309 >gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 339 Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 3/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 +LI KRT P+ALD++V AGL + A + + + + EF Sbjct: 178 NLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAIEL 237 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + L+ + T + + G L+ AL LS R+ + M+A+ Sbjct: 238 SFLTERRSAFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEE 297 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 +A + A + +I + + ++ Sbjct: 298 KAARLPAIMTIPLILFILPTLFVVIL 323 >gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 94.4 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 7/157 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +L +KR + FP+ALD+++ V AG+ + + + +S + EF + Sbjct: 162 ISNLAQKRQKSLMRAFPDALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVA 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + + G L +AL +++ R+ + +A Sbjct: 222 ELSYLPDRRLAYENLALRTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEA 281 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMN 153 + +A S+ AK + I+ LP ++ P Y+ Sbjct: 282 EKKAASLPAKLTVPMILFFLPVLFLVVL---GPAYIQ 315 >gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c] gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 285 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 3/178 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 A +P+ +D + +VRAG+ + + +A + + P+R F R E S S Sbjct: 101 MADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSC 160 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + + + ++GG +L L LS LR+ +A+++ Sbjct: 161 LDKLADELADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTV 220 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + + P+ V L+ + P G +L A + +VM+ + Sbjct: 221 NAARLALAAPWVVLLLLATRGQN--VSAYDSPTGVAVLVGGGAVSVFAYVVMKRIGRL 276 >gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 293 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGL 63 + K P+A+D++V V +GL ++ A + + P+ +FR L Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++++ + + E+ +T +++ + G L++ L +S R ++ + + +A Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVY 145 + K + + + + +V Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281 >gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 295 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + + L ++ +R A+ +A Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 258 VPKATLMVTTFMIPATMILM 277 >gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 286 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 77/184 (41%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAG+ + + +A + + P+R F R E Sbjct: 96 RRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + ++GG +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ S G + P G ++L A ++ ++M+ Sbjct: 216 RQAWTVNAARLAMAAPWIVLLLL--ASRGENIQAYDSPTGVLVLLGGAGVSVLAYVLMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 313 Score = 94.4 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 +K I R + L P LDII V AGL + A+A V + VR EF+RV+ Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ M + V+ F + ++G NL L + R + ++A+ Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRAEK 275 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +I + C ++ F Sbjct: 276 LAMEAPVKMLLPLIAFIFPCTFIVLLF 302 >gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein [Atopobium rimae ATCC 49626] gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein [Atopobium rimae ATCC 49626] Length = 311 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 8 RTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 R K P + ++ +G +S A+ + S V F R G+ + Sbjct: 131 RKLKLEVSHSMPGIYRTLSVALGSGQTLSQAIEYVGNHSHGAVAQYFIRASLKLRCGMPV 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + + S +T + + + G L + ++ + + + + + Sbjct: 191 ESVVEELACDLSVPGSSLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+ LP + ++ SP + L G + +A ++++R ++ Sbjct: 251 VRLSARIVCLLPLLLIGVLSLISPDFQKGLTTT-TGIICTLLALGMDAGALVIIRKLMK 308 >gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21] Length = 329 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ KRT P+ALD++V AGL V A + + + EF Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L+ V T + + G L+ AL LS R+ + M+A Sbjct: 229 ELSFLNERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A + A + I+ LP ++ Sbjct: 289 EEKAARLPAIMTVPLIMFILPVLFIVIL 316 >gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +++ ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 163 LSQKTREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSL 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 282 Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVY 145 + +A ++ AK S + + LP + + Sbjct: 283 EEKAHALPAKMSIPVTVCILPVVLMIAII 311 >gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 9/157 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 + R + FP+ALD++V V +GL + + + + + E V Sbjct: 163 RKQARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIR 222 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G++ +E++ ++ L+++ ++++ + G ++++ L + RDR+ A+ Sbjct: 223 AGITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAEEM 282 Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK +I L FC+ S + P + V Sbjct: 283 G----AKIGTKLIFPLIFCLWPSFFLVAIGPAMIGVF 315 >gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + I R + L P LDI+ V AGL + A++ V + R E +RV+ Sbjct: 155 LHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDV 214 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +E++ M + ++ F T + +G NL L + R + +A+ Sbjct: 215 RAGKARAEALRAMAERLREPGITSFVTSVIQAESMGMNLGPVLRAQADQRRSERFQRAEK 274 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 +AL K +I + C +++F Sbjct: 275 KALEAPVKLLLPLIAFIFPCTFIVLFF 301 >gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] Length = 320 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I+KR+ K P+ALD+ V AGL + A+A + + ++ + E Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSLDAALARVSREIGPAAPELADELGLTAV 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 E++ + R + +V + + G L++AL L+ RD + MKA Sbjct: 220 ELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + +A + A + +I + + ++ P + VL Sbjct: 280 EEKAARLPATLTVPMIAFILPPLFVVL--IGPAIVQVLTTS 318 >gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + IK R + + FP++LD+I+ V AGL + A+ +V + E+ + Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GLS +++ + + +VS ++ + G +++++L S +LR +++M A Sbjct: 211 ELRAGLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A AK ++ L FC+ +Y Sbjct: 271 EERA----AKIGTKVLFPLIFCIFPSLYVV 296 >gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 295 Score = 94.0 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M+ KKR L P LD+I +AGL ++ A+A V + + EF R++ Sbjct: 138 MRDRRKKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREM 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++++ M + + + + ++ LG +L++ L+ +S R + A+ Sbjct: 198 RTGVSRMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHAEK 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + +++F Sbjct: 258 LAMEAPVKMIGPLVIFIFPVTFIIIFF 284 >gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM 14600] gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM 14600] Length = 231 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 80/188 (42%), Gaps = 6/188 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K ++R FL +F + L ++V ++R G +A + + P+ + +++ Sbjct: 38 KRREQRRYGIFLREFQDYLKLLVAALRNGYSAENAFRLAEEELGKITPADSPLLTAVQKL 97 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L + L E + M R + +E + +++ +LGG+ S L +R + R + Sbjct: 98 SARIRLQMPLEEGLVEMARELGYEEAVNLADLMAFARRLGGDYSRFLERSARSIASRIEL 157 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ A + ++ +P V V T+ Y+ L P G +++ + L Sbjct: 158 KEEMAADLAAKEYEQRVMSVMPLAVLLYVRLTAGAYLEPLYRPPLGTIMMSLCLGLYLGM 217 Query: 176 IMVMRLMI 183 ++ +I Sbjct: 218 FLLGERII 225 >gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47] Length = 311 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++K P+ LD++V + AGL + +++ + + E V Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + ++I R + S++I + G N+SE+L+ + +LR ++ A Sbjct: 210 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNV 154 + A K I+ ++ F + + SP + Sbjct: 270 EENAQKASVKI---ILPTMLFIFPAIFIVLVSPAAFKI 304 >gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O] gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O] Length = 293 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGL 63 + K P+A+D++V V +GL ++ A + + P+ +FR L Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++++ + + E+ +T +++ + G L++ L +S R ++ + + +A Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVY 145 + K + + + + +V Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281 >gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 320 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + +KR L FP+ALD++V V AG+ + A++ + +S + + E Sbjct: 159 LTNKRQKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTL 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +++ + LQ++ +T++ + G ++S+AL S +R + +A Sbjct: 219 ETRAGMPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + +A + K + L+ F P ++ + Sbjct: 279 EEKAAKIPVKL-----------LFPLIMFIFPSLFVAILGPAVIRI 313 >gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 332 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 4/166 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+ I KRT P+ALD++V AGL V A A + + + EF+ Sbjct: 167 LKNQIDKRTHAIRKGLPDALDLMVICAEAGLTVDAAFARVARELRRAYPELGDEFQLTSV 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +++ + + L + T + + G L+ +L LS R+ + M+A Sbjct: 227 ELGFLTDRRQALENLSMRVNLDALRGVVTTMIQTEKYGTPLASSLRVLSAEFRNERMMRA 286 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + +A + A + I+ LP ++ + L++ G Sbjct: 287 EEKAARLPAIMTVPLILFILPTLFIVILGPAGCSINDTLMSTMGGK 332 >gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1] gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1] Length = 313 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K ++K P+ LD++V + AGL + +++ + + E V Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 211 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + ++I R + S++I + G N+SE+L+ + +LR ++ A Sbjct: 212 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 271 Query: 118 KVQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNV 154 + A K I+ ++ F + + SP + Sbjct: 272 EENAQKASVKI---ILPTMLFIFPAIFIVLVSPAAFKI 306 >gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 298 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 1/135 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K R + D P LD IV +V AGL ++ + + P+ EFRR++ Sbjct: 140 LTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKGPLAQEFRRLLRDM 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL+ +E++ RM M + ++S F+ + ++G +L +L + R+ + ++A+ Sbjct: 200 RSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEK 259 Query: 120 QALSMEAKASAWIIG 134 AL K ++ Sbjct: 260 LALEAPVKMMLPLVM 274 >gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6] gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 293 Score = 93.6 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGL 63 + K P+A+D++V V +GL ++ A + + P+ +FR L Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++++ + + E+ +T +++ + G L++ L +S R ++ + + +A Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVY 145 + K + + + + +V Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281 >gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 305 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++++ ++ + FP+ +D+++ AG+ + + + + + + + V Sbjct: 147 LTQQVREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A Sbjct: 207 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 266 Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVY 145 + +A ++ AK S + + LP + + Sbjct: 267 EEKAHALPAKMSIPVTVCILPVVLMIAII 295 >gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f] gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f] Length = 286 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAGL + +A+A + + +R F R E Sbjct: 96 RRRRGRMHDLREVWPDVVDNLASAVRAGLSLPEALAAVGVRGPVALRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + ++GG +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ S G + P G +L A ++ ++M+ Sbjct: 216 RQTWTVNAARLAMAAPWIVLLLL--ASRGENVRAYDSPTGVAVLAGGAGVSVLAYLIMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 321 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + R K + FP+ALD++V +G + A+ + + S + E V + Sbjct: 160 LDRFAASRMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQ 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ LS ++ L ++ + I+ +LG ++E L + RD++ A Sbjct: 220 KNRAGIELSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 + M AK II + C+ S + P + V+ Sbjct: 280 EE----MAAKLGVKIIFPMLTCIWPSFFIVAVGPAVIKVM 315 >gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 284 Score = 93.2 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A + +P +D + VRAGL + +A+A I + + +R F++ Sbjct: 93 VSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGDRGPEQLRDPFKQFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 ++S+ R+ + + V ++GG +L L+ LS LRD +A++ Sbjct: 153 TTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDLGRLLSTLSGFLRDDARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + +A + + P+ V L+ + P G ++L A I +M Sbjct: 213 LARQSWSVNAARMAVAAPWLVLILLATQRETL--QAYDTPTGTVILIAGAVLSFIAYRLM 270 Query: 180 RLMINF 185 + Sbjct: 271 IRIGRL 276 >gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 301 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 80/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R K + F + + ++ ++ + A ++ P++ RV+ Sbjct: 115 LDYLGRRRVRKIEEQFKDFVKMLGAYLKMVPSFAGAFIKAAEEAESPLKEHTDRVVRKFE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ++ + + + + ++ I ++ +LS ++ L +R M K+ Sbjct: 175 LGEDIETALQEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNKIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + + +SP ++ + P G +++ AA I V+ Sbjct: 234 AMTVQAKSLMVSLAGVMAVMIAVTMMSSPDFVKA-YSTPAGRIVIAYAALSYFISTFYVL 292 Query: 180 RLM 182 + + Sbjct: 293 KKI 295 >gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 313 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R P LD++ V AGL A+ + + + EF+ V Sbjct: 156 LASRVTRRQNLLEKQLPGFLDLLSVCVEAGLGFDQAIQYVCHEYKGELSDEFKVVQRDIS 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + +++ + + + +++ F+ + ++G +L L SR +R K + + Sbjct: 216 LGSTRKQALMSLCQRVTSSQMTTFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEK 275 Query: 121 ALSMEAKASAWII 133 A + K ++ Sbjct: 276 AQKLSTKILIPML 288 >gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 295 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 258 VPKATMMITTFMVPATMILL 277 >gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 326 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + ++KR FP+ALD+++ V++G+ V A A + + ++ + E Sbjct: 167 ISNRVQKRQTSIKQAFPDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V +T + + G + +AL +++ R+ + +A Sbjct: 227 ELSYLQDRRQAYENLAKRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEA 286 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K + I+ LP ++ GYM + Sbjct: 287 ERKASALPPKLTVPMIVFFLPVLFIVILGPAGIGYMQM 324 >gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 292 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++H K K + P LD++ V+ G+ V ++ + + S + V E Sbjct: 134 LEHRRKVLQDKISNQLPYLLDLMAMCVQTGMTVEASIQYLSSELSALDKDLGHTMNIVNE 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + L +++ + + P EV F + + G + L NL+ +R+ + + Sbjct: 194 RSRL-VGLDQALDELYQRFPATEVRSFVMTLKQSLRYGSAIYSVLNNLASDIREVRVLAL 252 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + + ++ +PG M ++ Sbjct: 253 EEKIGKLSAKMSVPLILFI--LIPIVILIAAPGIMRLMYG 290 >gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 347 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 ++ +KRT P+ALD++V AGL V A + + + + EF Sbjct: 183 NMRQKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEFALTSIEL 242 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ + + L+ V T + + G L+ AL LS R+ + M+A+ Sbjct: 243 GFLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEE 302 Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144 +A + A + I+ LP ++ Sbjct: 303 KAARLPAIMTVPLILFILPVLFIVIL 328 >gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 293 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 + + ++R A+ L P LD + +V AGL ++ A+ V + + P+R E V+ Sbjct: 136 RDVRRRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLFFIFPITFIVLGF 281 >gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 321 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ V A + + S + E Sbjct: 163 VKNRISKRQTAIRRAWPDALDLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V T + + G + + L L++ RD + +A Sbjct: 223 ELSYLPDRRKAYENLAERTGLDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEA 282 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + ++ Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFAVII 310 >gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 304 Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 63/150 (42%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + +R PN LD++V V +GL + + + + +EF + Sbjct: 139 VQFCVGRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEICAEFTVMNL 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +E++ + + +V V+ + G +++++L + LR +A Sbjct: 199 ELRAGIRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A +K + ++ + FCV ++ Sbjct: 259 EERA----SKLAVKLVFPIFFCVLPSLFVV 284 >gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis MSMB43] Length = 310 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 64/143 (44%), Gaps = 3/143 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 +I++R + P+ALD++V AG + A+ + + P+ EF + Sbjct: 153 MIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPLADEFAVTADELQ 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +S +++ + + + + T + Q G ++++L LSR R + + + + Sbjct: 213 IGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRTERSMQIVALEEK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 A + K S ++ + V+ + Sbjct: 273 AAKLAPKMSLPMLLFIMPTVALI 295 >gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 293 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 ++ + K+ + P LD + SV AGL ++ A+ V + + P+R EF V+ Sbjct: 135 LRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDL 194 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GLS ++++ RM + ++EV+ F + ++G L+ L S R + +A+ Sbjct: 195 KSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEK 254 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 QA+ K ++ + ++ F Sbjct: 255 QAMEAPVKLIFPLVVFIFPVTFIVLGF 281 >gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665] Length = 285 Score = 92.5 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + +P+A+D ++RAGL + +A+ + + +R F++ Sbjct: 94 LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G +++ R+ M + + ++GG ++ L LS LR ++A++ Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + P+ V L+ T P + + G +LL A ++ VM Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLG-TQPAAVAAYRSAAGGAVLLAGMVASVVC-YRVM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1] gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P+ALD+++ V +G+ + A + + S P+ E Sbjct: 166 IQNRITKRQQSIRRAWPDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + V + + + G + AL ++ R+++ +A Sbjct: 226 ELSFLQERRQAYLNFAKRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A S+ K + +I + ++ P M ++ Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFFVI--MGPAVMQIIAT 323 >gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 329 Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR FP+ALD+++ V +GL + A + + S P+ EF Sbjct: 170 LTNAITKRQQSMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V TV+ + G L AL ++ RD + +A Sbjct: 230 ELSYLPDRRQAFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEA 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + QA ++ K + +I F +V +P + V+ Sbjct: 290 ERQAAALPPKLTVPMIVF--FLPVLMVVVMAPAIIQVM 325 >gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1] gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1] Length = 319 Score = 92.1 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + I +R L +FP LD++V +RAGL + A+ + +R EF +V+ Sbjct: 152 LSDQINRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREI 211 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S E++ + M L+ +S F ++ + GG + L + R+ + A++ Sbjct: 212 RAGKSRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEI 271 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147 A + ++ L + L+ F Sbjct: 272 AANKAPIRMLIPMMLFLFPIIFMLLTFI 299 >gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 296 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K R + D P LD I SV AGL V+ + V + + EF R++ Sbjct: 138 LGERRKLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDI 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +E++ RM M + +++ F++ + ++G NLS+ L + R+ + ++A+ Sbjct: 198 RAGLPRAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEK 257 Query: 120 QALSMEAKASAWIIG 134 AL K ++ Sbjct: 258 LALEAPVKMMLPLVM 272 >gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia thailandensis MSMB43] Length = 244 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG +S A+ + + P+ EF Sbjct: 84 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTICPPLADEFSVCAN 143 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 144 ELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 203 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 204 EEKAAKLAPKMTLPMMLFVMPTVALI 229 >gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 293 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R A+ L LD + +V AGL ++ A+ V + P+R E V+ Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ + Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281 >gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 292 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 61/140 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R K + PN LD ++ +V AGL A+A P+ E R ++ +G S Sbjct: 141 QERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQVGRSR 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S + +Q++ F + G +++ L ++ +R ++ +A+ +A+ + Sbjct: 201 RDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQKAMKLP 260 Query: 126 AKASAWIIGSLPFCVSTLVY 145 ++ + + ++ Sbjct: 261 VLVLFPLLLFIFPVIFIVIL 280 >gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I+KR FP+ALD+++ + +G+ + A + + P+ EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 333 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 67/157 (42%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + KR A + FP++LD+++ V +G+ + A A + + +S + E Sbjct: 159 LTNRADKRKASIMKAFPDSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + +T + + G + AL +++ R+ + ++A Sbjct: 219 ELSYLQERRQAYVNLADRTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ AK + +I + ++ +P Y+ + Sbjct: 279 EKKAAALPAKLTVPMIVFFLPVLFIVI--GTPAYIQI 313 >gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 295 Score = 91.7 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 138 IRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 258 VPKATMMITTFMVPATMILL 277 >gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 285 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + +P+A+D ++RAGL + +A+ + + +R F+ Sbjct: 94 LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G +++ R+ M + + ++GG ++ L LS LR ++A++ Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + P+ V L+ T P + + G +LL A ++ VM Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLG-TQPAAVAAYRSAAGGAVLLAGMVASVVC-YRVM 271 Query: 180 RLM 182 + Sbjct: 272 LRI 274 >gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 292 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 3/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M+ + ++ A L P LD + +V AGL V+ A+ V + D P+R EF V+ Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +++ R + EVS I+ ++G L++ L S R + +A+ Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 QA+ K ++ + ++ F P M + Sbjct: 254 QAMEAPVKLLFPLLVFIFPVTFIVLGF--PIAMKFM 287 >gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKA 257 Query: 125 EAKASAWI 132 KA+ + Sbjct: 258 VPKATFAV 265 >gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 322 Score = 91.7 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59 ++I +R FP+ALD+++ V +G+ + A + + + E Sbjct: 166 NVISRRQDSIRKAFPDALDLMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTAEL 225 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + R L V +T + + G L +AL +++ RD + +A+ Sbjct: 226 SYLQERRMAYENLARRTGLPGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEAEK 285 Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144 +A + K + I+ LP ++ Sbjct: 286 KAAGLPPKLTVPMILFFLPVLFGVIL 311 >gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201] gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 285 Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 83/183 (45%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +RTA + +P+ +D + ++RAG+ + +A+ + + +P+R F R Sbjct: 94 VRRRAHRRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 L S++ + + + + V ++GG +L + L LS LR+ + ++++ Sbjct: 154 ASGQLHGSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ + L+ T P + N P G ++L A + +M Sbjct: 214 EARQSWTVNAARLSVAAPWLILGLM-ATQPAAVQA-YNTPAGAVVLLGGLAVSVAAYQLM 271 Query: 180 RLM 182 + Sbjct: 272 LRL 274 >gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 295 Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 57/140 (40%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 VRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 198 RRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 257 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 258 VPKATMVITTFMVPGTMVLL 277 >gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 461 Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ KR + P+ +D++ V G+ + A+A + + SD + E R V E Sbjct: 284 VRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARVSWEISDTYPAMAEELRIVAE 343 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +LG +L +++ M + + E+ +T++ ++G N+S++L S +R +A Sbjct: 344 QANLG-TLEHALNNMNERVDVPELHSLTTLLIQTERMGTNVSDSLTEYSDGMRATLQQRA 402 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 +A + K + L V + Sbjct: 403 DQKANAATFKLLFPTVLCLMPAVYFFLL 430 >gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 330 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 I+KR+A P+ALD++V AGL V A + + + + EF Sbjct: 176 IQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAIELSF 235 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + L + T + + G L+ AL LS R + M+A+ +A Sbjct: 236 LTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 295 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + A + +I + + ++ Sbjct: 296 ARLPAIMTVPLILFILPTLFVVIL 319 >gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 319 Score = 91.3 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I R P+ALD++V V AGL + +V + + + +E R Sbjct: 154 LTSRISSRQLTLERGLPDALDLLVTCVEAGLGLDASVQRVSEEIHRAWPQLATELRTTFL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ E+ R+ ++++ S ++ G +++ AL S +R R+ +A Sbjct: 214 EVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQTEIFGTSVALALRVQSDGMRVRRMHRA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + +I + + ++ P + ++ Sbjct: 274 EEKAAYVSVKMTLPLILCILPSLLAVI--MGPAIIGIM 309 >gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 90.9 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 72/191 (37%), Gaps = 8/191 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55 H +KR+ + F + L+ + S+ AG+ V D++ + E + Sbjct: 77 NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + +++ + +++ F+ + GGN+ E + N IL D+ + Sbjct: 137 LIGFNNNINIETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITI 196 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +V+ + ++ I+ +P S ++ G + G A +I Sbjct: 197 EMEVKTMIAASRNELNIMMCMPVLFSLVLNVMGGDITGH--ATLIGRIATGAAVMMFIIA 254 Query: 176 IMVMRLMINFD 186 MV + ++ Sbjct: 255 YMVGKKLMTIK 265 >gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 14/166 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ +R + P+ALD++V V AG+ + A + + + P+ E + + Sbjct: 159 LRLKTSRRRKQLRRGLPDALDLMVVCVEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNL 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + L++V+ +T++ + G ++++AL S R +++ A Sbjct: 219 ELRAGKARRDALRNLALRTDLEDVNSLTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + A + K V L+ F P V++ Sbjct: 279 EELAAKLPVKL-----------VLPLILFIFPSLFVVIMGPAMIRA 313 >gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656] gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656] Length = 258 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 70/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + SE R + Sbjct: 68 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQ 127 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 128 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 187 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 188 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 247 Query: 179 MRLMINFDV 187 + + + Sbjct: 248 AKKFLQVGI 256 >gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74] Length = 300 Score = 90.9 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 61/140 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R A P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 143 VRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG ++E L ++ +R +A+ +A Sbjct: 203 RRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKT 262 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 263 IPKATMATLVFMLPATMILI 282 >gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 293 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 + + ++R + L P LD + +V AGL ++ A+ V + + P+R E V+ Sbjct: 136 RDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLMFIFPITFIVLGF 281 >gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC 15444] Length = 310 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I +R FP+ +D++V V AGL + +V + + + R + Sbjct: 151 LDMRISQRKQACSSGFPDMMDLMVACVEAGLSLDASVQRVGEELELRHPIIAGHMRTLSL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S + + + E +T++ ++G +L + L S +R R+ + A Sbjct: 211 ELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRILMA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A+++ AK + +I + + ++ P + ++ Sbjct: 271 EEKAMALPAKMTLPLIIFVFPVLLGVLIL--PAVVMLMTT 308 >gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] Length = 291 Score = 90.9 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 3/174 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +P +D +V VRAG + + + + PVR F ++ M Sbjct: 110 RAAWPEVIDAMVSGVRAGTALPQVLCDLADEGPVPVRFAFEAFSRDYSANGRFELALDTM 169 Query: 73 VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + +GG +L+ L +L+ +LR+ ++ +++A +A Sbjct: 170 KETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + P+ V L+ G + N P G +L A +I ++M+ M Sbjct: 230 LGLAAPWVVLLLLS--GGGASAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281 >gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 297 Score = 90.5 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 140 VRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 259 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 KA+ + + L+ Sbjct: 260 VPKATMVVTTFMVPGTMILLI 280 >gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii] gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii] Length = 318 Score = 90.5 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ I+ R L FP+ALD++V V AGL + A+ + + + E R + Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHRELSEELRALYL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + L+EV F ++ + G ++ +AL + LR R++++A Sbjct: 214 ELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + K +I + S LV P + V+ Sbjct: 274 TEMAAKLPVKLLLPLIFFI--FPSLLVVLLGPAAIQVI 309 >gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14] gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14] Length = 295 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 258 VPKATMMITTFMVPATMILL 277 >gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira crunogena XCL-2] Length = 296 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 3/141 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64 R K P+ LD+ + AGL +A+ + + + EF +IE +G+ Sbjct: 145 RLNKVNIALPDFLDMANICMSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVP 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ + P +++ ++ +LG +S AL SR + ++ + +A Sbjct: 205 RQEALKQFALRNPSKDIQDLVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKT 264 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 AK + I+ L L+ Sbjct: 265 SAKMAIVILPFLMLPYFMLML 285 >gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] Length = 179 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 49/102 (48%) Query: 46 DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 P++ R+ LG+SL ++ E F+ + V + GGN SE + NL Sbjct: 1 QPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENL 60 Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 +++RDR+ +++A++ E + +A ++ LP ++ Sbjct: 61 IKLIRDREQAGRQLRAMTGETRMTALVLALLPVGMAGYFLTV 102 >gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257 Query: 125 EAKASAWIIGSLPFCVS 141 KA+ I + Sbjct: 258 VPKATMMITTFMVPATM 274 >gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 290 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++RT + +P A+D I ++RAGL + +A+ + + +R F Sbjct: 99 LRSAARRRTTAMREVWPEAVDHINSAIRAGLSLPEALVQLSRNGPEELRPAFAEYALDYQ 158 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + + R+ + + + +GG +L L LS LR+ +A++ Sbjct: 159 ASGDFASCLDRLKIRLADPVGDRIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAEL 218 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P + G +L+ V A LI VM Sbjct: 219 EARQSWTVNAARLALAAPWIVLALM-ATRPQAAQA-YDTATGMVLIVVGAVASLIAYRVM 276 Query: 180 RLMINF 185 L+ Sbjct: 277 LLIARL 282 >gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 323 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + I R FP+ALD+++ V +G+ + A + + P+ EF Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V STV+ + G L +AL ++ RD + M+A Sbjct: 224 ELSYLPDRRTAYLNLAARTGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I F +V SP + V+ Sbjct: 284 EKKAAALPPKLTVPMIVF--FLPVLMVVVLSPAAIQVM 319 >gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 296 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 139 IRVRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMS 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 199 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 258 Query: 125 EAKASAWIIGSLPFCVS 141 KA+ I + Sbjct: 259 VPKATMMITTFMVPATM 275 >gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC 17982] gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC 17982] Length = 292 Score = 90.5 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 3/174 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +P +D +V VRAG + + + + PVR F ++ M Sbjct: 110 RAAWPEVIDAMVSGVRAGTALPQVLCDLAEEGPVPVRFAFEAFSRDYSANGRFELALDTM 169 Query: 73 VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + +GG +L+ L +L+ +LR+ ++ +++A +A Sbjct: 170 KETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + P+ V L+ G + N P G +L A +I ++M+ M Sbjct: 230 LGLAAPWVVLLLLS--GGGANAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281 >gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 292 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 3/174 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +P +D +V VRAG + + + + P+R F + ++ RM Sbjct: 110 RAAWPEVVDAMVSGVRAGTSLPQVLCELADEGPQPLRFAFDAFSRDYSANGRFASALDRM 169 Query: 73 VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + +GG +L+ L +L+ +LR+ ++ +++A +A Sbjct: 170 KDEVRDPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + P+ V L+ G + N P G +L A ++ + M+ + Sbjct: 230 LGLAAPWVVLLLLSGG--GGSAAVWNSPGGIAVLCAGAGMCVVAYLAMKALGRL 281 >gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78] gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG] gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF] gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78] Length = 300 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 143 VRERRDVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG ++E L ++ +R +A+ +A Sbjct: 203 RRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKT 262 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 263 IPKATMVTLVFMLPATMILI 282 >gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 426 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 67/157 (42%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +++ + R + P+ LD++ V G+ V ++ I + + E + + E Sbjct: 234 VRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKIINE 293 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G S+ ++ + + + EV F++++ S++G ++S AL + +R+ +A Sbjct: 294 QSRIG-SMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLKQRA 352 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + + L V ++ P + + Sbjct: 353 EEKGNRATFRLLFPTVLCLMPAV--YLFLMGPAIIEL 387 >gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 285 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L KR A + +P +D + +VRAGL + +A++ + + + +R F R Sbjct: 94 VRRLAVKRRADLREVWPEVVDNLASAVRAGLSLPEALSALSTRGPEVLRPPFARFAAEYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + R+ + + V ++GG +L L LS LR+ +A++ Sbjct: 154 SSGRFGNGLDRLKDDLADPVGDRIVETLRVAREVGGSDLGRVLRTLSSFLREDARARAEL 213 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + +A + + P+ V L+ S + P G +L AA L +M Sbjct: 214 ETRQGWVVQAARLAVAAPWVVLLLLATQSATL--EAYDSPLGTAILLGGAAVCLASYRLM 271 Query: 180 RLMINF 185 + Sbjct: 272 LRIGRL 277 >gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 300 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 60/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+S Sbjct: 143 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 203 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 262 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 263 VPKATLMITTFMVPATMILL 282 >gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I KR FP+ALD+++ V +G+ + A + + P+ E Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L + L +++ RD + +A Sbjct: 226 ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A S+ K + I+ LP ++ Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFVVIL 313 >gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 330 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 ++KR+A P+ALD++V AGL V A + + + + EF Sbjct: 176 VQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAIELSF 235 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + L V T + + G L+ AL LS R + M+A+ +A Sbjct: 236 LTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 295 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + A + +I + + ++ Sbjct: 296 ARLPAIMTVPLILFILPTLFVVIL 319 >gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629] Length = 247 Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 70/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + SE + + Sbjct: 57 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236 Query: 179 MRLMINFDV 187 + + + Sbjct: 237 AKKFLQVGI 245 >gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 303 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58 + + + + FP+ LD++V V AGL + A + + + +R + Sbjct: 143 VSRRQRLQKEAYRSAFPDMLDLLVVCVDAGLSLEAAFDRVGSEMDESGALRVNLAIMASE 202 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G + + + + + E F+ ++ +LG ++S++L S +R+++ M+A+ Sbjct: 203 LRNGRGFVDGLQGLAERLDIDEARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAE 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147 +A ++ K +G+ F V +V Sbjct: 263 EKANALPVKIVLP-LGAFIFPVILIVVMV 290 >gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 294 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 4/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + + + +D++ + AGL +S ++ + + EF+ Sbjct: 137 INMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGILAEEFQYAFVEIE 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG SE++ M + + +++V+ I + G +++ L + + R + Sbjct: 197 LGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQAN----RIKQDFRTN 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147 AL M AS ++ + + ++ Sbjct: 253 ALKMAQAASIKMLAPMILFILPALFIV 279 >gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 325 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + + + EF Sbjct: 166 LKNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKIAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 301 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 81/183 (44%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++L ++R K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 115 LEYLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVVRKFE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + ++ I ++ +LS ++ L +R M ++ Sbjct: 175 LGEDLEEALKEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 +++++AK+ + + + +SP ++ + P G +++ A I V+ Sbjct: 234 SMTVQAKSLMVSLAGVMIVMMAATVMSSPDFLRT-YSTPVGKVVIAYAVLSYFISTFYVL 292 Query: 180 RLM 182 + + Sbjct: 293 KKI 295 >gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 325 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ V +G+ + A + + + EF Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G L + L +++ RD + +A Sbjct: 226 ELSYLQDRKTAYENLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPILFVVIL 313 >gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160] gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160] Length = 316 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + LI +R P+ALD++V AG + V + + P+ EF + Sbjct: 157 LNALISRRQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGD 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + L V T + Q G ++ +L LSR R + M Sbjct: 217 ELQVSGDSAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMAL 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V + Sbjct: 277 EEKAAKLATKMTMPMMLFILPTVGLI 302 >gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1] Length = 247 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 70/189 (37%), Gaps = 6/189 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58 ++++ K ++F N L ++ ++ AG V +A + SE + + Sbjct: 57 VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + +S L+++ FS + S + GG + + + + + + + + Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + +P + + +S YM+ L + G + + I + Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236 Query: 179 MRLMINFDV 187 + + + Sbjct: 237 AKKFLQVGI 245 >gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18] Length = 315 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L + L LS LRD ++++ Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ T P ++ N G ML+ AA L +M Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLM-ATQPAA-RMVYNSFAGAMLMIAGAAISLAAYRLM 301 Query: 180 RLM 182 + Sbjct: 302 LRI 304 >gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31] gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31] Length = 328 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + ++ +KR + FP+ALD+++ V +G+ + A+A + + + E + Sbjct: 163 ISNIAQKRRESIVAAFPDALDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + T + + G L AL +++ RD + A Sbjct: 223 ELSYLPERRLAYEGLARRTNHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAA 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ AK + +I + ++ P +N++ Sbjct: 283 EKKAAALPAKLTVPMILFFLPVLFIVI--MGPAAINIM 318 >gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 327 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59 ++ +KR + FP++LD+++ V +G+ V A+ + + + E + Sbjct: 168 NIAQKRRESIVAAFPDSLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTAEL 227 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ + R V +T + + G L AL +++ R+ + A+ Sbjct: 228 SYLPERRQAYENLARRTNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSAEK 287 Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144 +A ++ AK + I+ LP ++ Sbjct: 288 KATALPAKLTVPMILFFLPVLFIVIL 313 >gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 295 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257 Query: 125 EAKASAWI 132 KA+ + Sbjct: 258 VPKATFAV 265 >gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 322 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +R + FPN LD+I+ V AGL + A + + + V R Sbjct: 158 VRIKADRRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNL 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ RM + E+ F+T++ +LG ++ L + +R+++ M+A Sbjct: 218 HLRAGATREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRA 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + S ++ + + ++ P + V+ Sbjct: 278 EEKAHRLPVLISLPLVTCMLPTMIGVLMI--PAAIRVV 313 >gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum JL354] Length = 342 Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 KKRT P+ALD++V AGL + A + + + EF Sbjct: 186 AKKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSF 245 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + + L+ V T + + G L+ AL LS R+ + M+A+ +A Sbjct: 246 LNNRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKA 305 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 + A + I+ LP ++ Sbjct: 306 ARLPAIMTVPLILFILPTLFIVIL 329 >gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + P+ EF Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + L V + + G LS+++ +++ RD + +A Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614] gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614] Length = 325 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ + + + + S + E Sbjct: 166 LKNKIDKRKLTIQRAWPDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G + AL ++ R+++ A Sbjct: 226 ELSYLSDRRIAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K + +I + ++ P + V+ Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFII--MGPAVIQVM 321 >gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 293 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + + ++R A+ L LD + +V AGL ++ A+ V + P R E V+ Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL+ +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ Q Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQ 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + ++ F Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281 >gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 324 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + R K +DFP+ALD++ V AGL + A+ + + SD V E ++ Sbjct: 157 LSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSDVVAGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +L + Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDLL----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ +V P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVY 312 >gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24] Length = 300 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+ Sbjct: 143 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMG 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 203 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 262 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 263 VPKATLMITTFMVPATMILL 282 >gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797] gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797] Length = 370 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64 R ++ P+ LD++ V G+ V A+ I+ + + + E + VIE +G + Sbjct: 199 RRSEIEQGIPDMLDMLNMCVSQGMTVPHALKKIISELAKVYPALAHELKIVIEQSSIG-T 257 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S+++S + + + EV F+ ++ Q+G N++ AL S +R+ + +A +A Sbjct: 258 FSQALSNFSKRIDVPEVHSFAALLIQTDQMGTNVTSALQEYSDNMRESLSQRADEKANKA 317 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + L + ++ P + + Sbjct: 318 TFKLLFPTVLCLMPAI--YIFLLGPAIVEL 345 >gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 302 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 7/146 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 +K R + P+ LD++ V AGL + A+ +P+ E R+V Sbjct: 147 VKARQLEIFHPLPDILDLVTLCVEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTMEVRA 206 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A+ Sbjct: 207 GKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMAEE-- 264 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147 AK + +I L + + Sbjct: 265 --AAAKTTIKLIFPLIMFIFPALLVV 288 >gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense MSR-1] Length = 199 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66 FP+ALD++V V AGL V A+ + + + + E Sbjct: 49 QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + L +V ST + + G +++AL LS+ R+ + A+ +A S+ A Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + +I + ++ P + V+ Sbjct: 169 KLTVPMIVFFLPVLFIVI--AGPAAIQVM 195 >gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15] gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000] gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15] gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000] Length = 362 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++ +KR + FP+ALD+++ V +G+ + A+ + + SS + E + Sbjct: 203 ISNVAQKRRESIVAAFPDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTA 262 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + +T + + G L AL +++ R+ + A Sbjct: 263 ELSYLPDRRLAYENLARRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAA 322 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ A+ + +I + ++ P M V Sbjct: 323 EKKAAALPAQLTVPMILFFLPVLFIMI--LGPAIMKV 357 >gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I+KR FP+ALD+++ + +G+ + A + + P+ EF Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKQAYENLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii HTCC2633] gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii HTCC2633] Length = 326 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR + FP++LD+++ V AG+ + A+ + + S + E Sbjct: 169 LSNQAAKRRDSIMQAFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V +T + + G L +AL +++ RD + A Sbjct: 229 ELAYLQDRRAAFENLGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ AK + I+ LP ++ Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVII 316 >gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 286 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 74/181 (40%), Gaps = 3/181 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R + + +P +D +V VRAG + +A + +R F + Sbjct: 100 HRRAREAREAWPEVVDSLVSGVRAGAALPTLLADLGSGGPPALRGAFEAFGQDYRAHGRF 159 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 ++ R+ + + + +GG +L+ L +L+ +LR+ ++ +++A Sbjct: 160 DVALDRLKDRLADPVADRIVEALRLARSVGGADLARLLTDLAVLLREDARVRGELEARQS 219 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A + + P+ V L+ + + N P+G +L + A + +MR++ Sbjct: 220 WTVGAARLGVAAPWAVLLLISQGARS--ARVWNTPQGMAVLALGGACCVAAYALMRVLSR 277 Query: 185 F 185 Sbjct: 278 L 278 >gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19] gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19] Length = 362 Score = 89.0 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 2/180 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++R + P A+ + V AGL + +++ I + EF RVI + G Sbjct: 177 LIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISESDYGALSEEFERVIREINSGT 236 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ RM + + I+ + G N+++ L L+ + + + Sbjct: 237 PINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIAHELRQRYREYGHK 296 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++A A +I+ +L V ++ L+ P ++ M + + Sbjct: 297 LQALAFPYIMLTLVIPTLVTVAMLLAANLSGAFLVPPPLFGPMIAGMVGVMAGIFLFIFK 356 >gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 324 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +L + Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ +V P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVY 312 >gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 324 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + SS+ V SE ++ Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +L + Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ ++ P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHVY 312 >gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] Length = 290 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 71/160 (44%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ IK R + P LD++ V+ G+ V +++ + + + ++ E Sbjct: 133 LQAKIKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMNE 192 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L +S+ M +P E+ F ++ G ++ L L+ +R+ + ++ Sbjct: 193 RSRM-VGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYSVLTTLASDIREVQMLEL 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + + L+ +PG M +++N Sbjct: 252 EERIGKLAAKMSVPLIVFIMIPIVILI--AAPGVMRLMLN 289 >gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 324 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +L + Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ ++ P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVY 312 >gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 295 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 56/137 (40%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+ LD++ V AGL A+ + + P E R + +G+S ++ + Sbjct: 145 IERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQ 204 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R ++VS F T + +LG + + L ++ +R A+ +A K++ Sbjct: 205 LRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKSTLV 264 Query: 132 IIGSLPFCVSTLVYFTS 148 + + L+ + Sbjct: 265 VTLVMLPATMILIVVSF 281 >gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 301 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 71/175 (40%), Gaps = 6/175 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +AL ++R AG + A+ ++ ++ +++ + L ++ R Sbjct: 102 DALATWTEALRDTIAGAVGLEQAIPATAVNAAPAIKPGLNLLVDRLRIREPLPSALMRFA 161 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L E L+ L+ R+ +++ KV A + S + Sbjct: 162 DDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAAERRSTRRSVQV 221 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + ++ V+ + +P Y+ G +L + A +G++ +R + +V Sbjct: 222 VVAITLLVAAALVLFNPAYVEP-YTSFVGQFVLFLVIALYAVGLVWLRKLAKIEV 275 >gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58] gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58] Length = 329 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 ++KR+A P+ALD++V AGL V A A + + + EF Sbjct: 175 VQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFARVARELGKAYPELGDEFHLTAIELSF 234 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + L V T + + G L+ AL LS R + M+A+ +A Sbjct: 235 LTERRMAFENLASRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 294 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + A + +I + + ++ Sbjct: 295 ARLPAIMTVPLILFILPTLFVVIL 318 >gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4] Length = 245 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 78/182 (42%), Gaps = 8/182 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIE 57 + ++ + +F + +IV S++ G + A+ + + + + + Sbjct: 62 IKAEKRGRLSAEFKEFMMLIVASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQ 121 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L ++ + + L+E + +IS + GGN + + + + + + +K Sbjct: 122 KIAMNVQLEKAFFEFAKAIELEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQ 181 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ ++ E + ++ +P + + TSP ++ + + G L+ + ++ G + Sbjct: 182 EIETITTEKRLELKVMCIMPIGILAYISLTSPNFIAPIYGNVLGAGLM--SLCLIVYGAL 239 Query: 178 VM 179 ++ Sbjct: 240 II 241 >gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 328 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM 14863] gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 289 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 66/161 (40%), Gaps = 2/161 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +RT + P + ++ + AGL +++AV + +S + E R + Sbjct: 131 LRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGLLAGEMLRAVHEMA 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + E+ + + + G +++E L R +R+RK +A+ + Sbjct: 191 AGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFTLRTMRERKQQQAQQK 250 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 A + ++ + + T+V P + +L + G Sbjct: 251 AHEASVRMRVPMVALI--LMPTIVIILGPAVLRLLRHFAGG 289 >gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842] gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842] Length = 327 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 5 IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I + S+ V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ FF ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + + + +A I+ +LPF + P ++L+ P G ++ Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVF 305 >gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 297 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 140 VRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEGPWADELRITLRQMDMGVS 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 259 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 260 VPKATMVITTFMVPGTMVLL 279 >gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM 16841] gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 7/190 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIE 57 +KKR F + L + +VRAG AV + +D V +++ Sbjct: 51 VKKRKKTLRLQFKDFLGSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQ 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ L E L+++ F+ V SV + L I+RD+ ++ Sbjct: 111 YEKGGIPLKELFEDFADRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQ 170 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ + AK+ ++ +P + + G ++ L GH+ +A + + Sbjct: 171 EIETTIISAKSETMVMLIMPIVIVVAMSGMGSGLLDSLFTTAAGHLSATIALIIFAVSYI 230 Query: 178 VMRLMINFDV 187 + + +V Sbjct: 231 LAVKSSDIEV 240 >gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 325 Score = 88.6 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + + EF Sbjct: 166 LKNAITKRQISIKRAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43] gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43] Length = 331 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 7/154 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLG 62 KKR +P+ALD+++ V +G+ + A+ + + S + EF Sbjct: 178 KKRQQSIKMAWPDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTAELSYL 237 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + L+ V + + + G +++AL L++ RD + +A+ +A Sbjct: 238 QDRRVAFENLGNRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEAEKKAA 297 Query: 123 SMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ K + I+ LP + ++ P + V+ Sbjct: 298 ALPPKLTVPMILFFLPVLIGVIL---GPAAIQVM 328 >gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA] Length = 301 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 1/152 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSLSESI 69 P+A++++ ++ AG P+ + P+ EF V + LG S E++ Sbjct: 150 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 209 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + Q+VS F+ + G +L+E LA + + R+ +A + M K Sbjct: 210 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 269 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + LV + + +ND G Sbjct: 270 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 301 >gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 324 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R K +DFP+ALD++ V AGL + A+ + + S+ V SE ++ Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++SE+L LS +L + Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ ++ P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVY 312 >gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21] gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21] Length = 302 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 7/146 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 +K R + P+ LD++ V AGL + A+ +P+ E R+V Sbjct: 147 VKARQLEIFHTLPDILDLVTLCVEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTMEVRA 206 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A+ Sbjct: 207 GKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTAEE-- 264 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147 AK + +I L + + Sbjct: 265 --AAAKTTIKLIFPLIMFIFPALLVV 288 >gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652] gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652] Length = 328 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] Length = 290 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ IK R + P LD++ V+ G+ V +++ +V + + ++ E Sbjct: 133 LQAKIKARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQVLTKMNE 192 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L +S+ M +P E+ F ++ G ++ L L+ +R+ + ++ Sbjct: 193 RSRM-VGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLEL 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + + L+ +PG M +++N Sbjct: 252 EERIGKLAAKMSVPLIVFIMIPIVILI--AAPGVMRLMLN 289 >gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + I KR FP+ALD+++ V +G+ + A + + P+ EF Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 313 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 1/152 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSLSESI 69 P+A++++ ++ AG P+ + P+ EF V + LG S E++ Sbjct: 162 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 221 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + Q+VS F+ + G +L+E LA + + R+ +A + M K Sbjct: 222 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 281 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + LV + + +ND G Sbjct: 282 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 313 >gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110] gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110] Length = 324 Score = 88.2 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ V A + + + EF Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L +L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24] gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24] Length = 291 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + LG+ Sbjct: 134 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMG 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+ + + R ++V+ F T + +LG + + L +L++ +R A+ +A Sbjct: 194 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 253 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ I + L+ Sbjct: 254 VPKATLMITTFMVPATMILL 273 >gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] Length = 284 Score = 87.8 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H + A+ +P+A+D + ++RAGL + +A+ + + + +R F Sbjct: 93 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L + L LS LR+ ++++ Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A + P+ V L+ T P ++ N G ML+ AA L +M Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLM-ATQPAA-RMVYNSFAGAMLMIAGAAISLAAYRLM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] Length = 291 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 80/187 (42%), Gaps = 3/187 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++KR F +P+ +D ++ +VRAG+ + +AV + + R+ F+ Sbjct: 102 LRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHSGPEITRTYFQHFAMEYR 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 +++ + + VI + ++GG + L +LS ++R+ + ++ Sbjct: 162 SSGKFDVALTSLQSNFADKNSKRVFEVIRLGREVGGSEMGNILRDLSAMMRENLRISGEI 221 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + + P+ V ++ + + + G M+L + +M Sbjct: 222 QARQSWTVNAARLAVAAPWIVLLMISMRTDAASS--YSTTNGMMILALGGIACTFAYWLM 279 Query: 180 RLMINFD 186 + + +FD Sbjct: 280 QKLGSFD 286 >gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 282 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59 L+++R + + P AL ++ V AG PV A + + P+ E+ RV+ Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118 G S S ++ R R +QEVS F+TVI + + GG+ AL +S L +++ A+ Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEKRKAVAR 248 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + +K + + + +V+ +P + Sbjct: 249 SRGEEASSKL---VFPLVGILLVLMVFVAAPAML 279 >gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + + S + EF Sbjct: 166 LSNAISKRQLSIRRAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 299 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 51/131 (38%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ +V AG+ A+A + P+ E + G S+ ++ + R Sbjct: 152 LPDFLDVLAVTVMAGVNFRAALARVSQHFEGPLSEEIDLTLHQIANGASVRQAFQDLRRR 211 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + V F + + +LG L+E+L ++ +R + + A + + Sbjct: 212 SASESVGQFVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVTSMV 271 Query: 136 LPFCVSTLVYF 146 L ++ Sbjct: 272 LVPGALVFIFV 282 >gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] Length = 285 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 3/176 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + +P+ +D + +VRAG+ + +A+ + + VR+E S+ Sbjct: 104 ELRQVWPDVVDDLTSAVRAGMTLPEALISLSERGPQEVRAELHAFAVDYRASGRFVASLD 163 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + + + +GG +L L LS LRD + +++A Sbjct: 164 ALKERLADPVADRIVETLRIATDVGGSDLGRMLRTLSEFLRDDLRTRGELEARQSWTVNG 223 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A + + P+ V L+ T P + P G ++L ++ + M + Sbjct: 224 ARLAVAAPWVVLALMS-TRPET-AAAFDTPAGVLMLLAGGLTCVVAYLAMMRIGRL 277 >gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 324 Score = 87.8 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + V SE ++ Sbjct: 156 LSRRIASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G ++ ++L LS +L + Sbjct: 216 EMRSGFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSLRVLSDML----RTRR 271 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 +++A AK + ++ L FC+ + P ++++ Sbjct: 272 RMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIY 311 >gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 327 Score = 87.4 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61 I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 173 ISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTAELSF 232 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + R L+EV + + G +++AL L++ RD++ A+ +A Sbjct: 233 LPERRVALENLGRRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 ++ K + I+ LP V+ ++ Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316 >gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter ruminantium M1] Length = 309 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 70/169 (41%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P+ L + +R G+ + +A+ + + P+ E RRV+ +G S Sbjct: 92 ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES M + + +++ +I + GG L++ ++++S LR +K + ++ M Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKSSVMM 211 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + + + + +M L L A LI Sbjct: 212 SIMFLVLASVVAAPFALGMVGVYSSFMIELNRSSAICQLAPTVALIYLI 260 >gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ] Length = 404 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 1/145 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 +K I+ R + + P +D++ SV AGL A+ +V ++ + EF +I+ Sbjct: 247 IKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKTALSEEFETMIKEI 306 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G S +E++ + + L ++S F + +G ++ L LS +R +K+ + + Sbjct: 307 RIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQKKSSEVEK 366 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 + K ++ + V +V Sbjct: 367 AGATAATKILFPMLFLIVPAVFIVV 391 >gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36] gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36] Length = 294 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + + P+ALD++V V +GL + + + S + E+ Sbjct: 133 LKWRARTVNYRIALALPDALDLMVICVESGLTLEAVFQRVGHEMTAVSPELSREWLITEA 192 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L S +++ + + L EV +S + G ++ + ++ R + ++ Sbjct: 193 ELRLLDSRLTALNNLAKRTDLVEVENMVIALSQAEKYGSKIAPTMRLIASDSRQYQYLRL 252 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK S ++ + V L+ +P + +L Sbjct: 253 EEKVGKIPAKMSLPVVVLIMLPVVVLI--VAPTIIALL 288 >gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 313 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 2/150 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R K L FP +++ +V AG + A+ I + EF + + H Sbjct: 158 LGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIH 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +++ M M + ++ F I V ++ G L++ L + ++ +RD K ++ Sbjct: 218 AGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRD--ASKRELM 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++ + + S + T+V+ PG Sbjct: 276 EVAGKREISMLVPVVFGILPLTIVFAVFPG 305 >gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 324 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I KR +P+ALD+++ V +G+ + A + + + E Sbjct: 166 LKNQIDKRKLGIQRAWPDALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + + V + + G + A+ N++ R + A Sbjct: 226 ELSYLSERRMAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFA 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A S+ K + +I + ++ +P + + Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFVI--LTPAVIQAM 321 >gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 327 Score = 87.4 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 14/178 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I KR +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 160 LSRRITKRQRTIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ + ++++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 220 EMRSGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + K + L++ P M VL+ H+ + +F IG Sbjct: 280 EERAARIALKL-----------LFPLIFCIFPALMGVLLGPAMIHVYRVLLPSFATIG 326 >gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2] Length = 320 Score = 87.1 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 65/143 (45%), Gaps = 3/143 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++RT P+AL+++V V AGL + DA+ + + S + E ++ Sbjct: 161 VRRRTKAAAAGLPDALELLVVCVEAGLSLEDALQRVAQELKNSQPALADELTLTWAEINI 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S ++++ + + + V ++IS + G L+++L + +R+ + + +A Sbjct: 221 LPSREQALANLADRVNVPTVKSMVSMISQSMRYGTPLAQSLRVGATEMRNDQMTLLEERA 280 Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144 + A + ++ + + +V Sbjct: 281 NRLPALMTIPVMLFIMPTLFLIV 303 >gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10] Length = 331 Score = 87.1 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + +L KR + FP+ LD+++ V +G+ + A + + + E Sbjct: 174 LSNLAAKRQQSIMGAFPDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTA 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V T + + G L +AL +++ RD + A Sbjct: 234 ELSYLQDRRVAYENLAKRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAA 293 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A S+ AK + II LP ++ Sbjct: 294 EKKAASLPAKLTVPMIIFFLPVLFVVIL 321 >gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 328 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMSKRQHSIKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680] gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 301 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 59/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 144 VRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVS 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + ++V+ F + + +LG ++E L L+ +R A+ +A Sbjct: 204 RRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRRAAKT 263 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 264 IPKATMVTLVFMLPATMILI 283 >gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512] Length = 328 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 312 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ +R K + P+ LD++ + AGL + A+ + + D + E + Sbjct: 150 LRRQASERRLKIWQELPDVLDLLNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL E + ++V + +S V+ S+LG +++E+L S LR + A Sbjct: 210 EIQSGLPRKEVLEKIVDRNQVNALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + + + + +V P + +L Sbjct: 270 EEQGAKVSTKLTFPMTMLILPALLLVV--LGPAMIKML 305 >gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074] Length = 309 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ R P+ LD++ V +GL A+ + + P E R + +G+S Sbjct: 152 VRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 211 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG +++ L ++ +R ++ +A Sbjct: 212 RRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRRAAKT 271 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + L L+ Sbjct: 272 IPKATMVTLVFLLPATMILI 291 >gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510] gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510] Length = 334 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 3/144 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 L K+R + P+ALD+++ AG + ++A + + + + E + Sbjct: 177 LAKRRQSAIARTLPDALDLLIICANAGYSLDLSLARVGREMRLAARAMSEELVITADELR 236 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + E++ + L+ + + + G L++AL L+ +R + M + + Sbjct: 237 VLTDRREALRNLAERNDLEALRSLVATLLQAQKYGTPLTQALRTLAAEMRHARMMAIEER 296 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A + A S ++ + V +V Sbjct: 297 AARLPALISVPLMVLILPAVFIIV 320 >gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 285 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+A+D + +VRAG+ + +AV + + + +R++F E++ + Sbjct: 109 WPDAVDNLASAVRAGMSLPEAVMQVGERGPEVLRADFVAFGRDYRATGRFEEALDLLKIR 168 Query: 76 MPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + GG+L L LS LRD + ++++ A + Sbjct: 169 LADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGELESRQSWTVNGARLAV 228 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V + P + P G ++L V AA L M + Sbjct: 229 AAPWLVLASMSL-QPDVIAR-FGSPTGTLILVVGAATCLGAYRAMTWIGRL 277 >gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 305 Score = 87.1 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 14/167 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ L +R+A P+ LD++V +V +GL + AV + SS + E Sbjct: 146 LEKLALRRSALIARQMPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAIFSL 205 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + +++ + + + E++ ++ + G ++ ++ + LR ++ K Sbjct: 206 ELKLGAARGDALRNLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKL 265 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + QA + K + +++ P M V+ +++ Sbjct: 266 EEQAAKIPLKL-----------LFPVLFLIFPAIMAVMAGPAVINIV 301 >gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 288 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQ 59 +K K+R L P +D++ S+ AGL +S A+ + + P+ E RV+ Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +++ + ++ F + + + G +L L + R + ++A+ Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRAEK 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +I + C ++ F Sbjct: 251 LAMEAPVKMLGPLIFFIFPCTFIVIGF 277 >gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like protein [Vibrio sp. MED222] gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like protein [Vibrio sp. MED222] Length = 301 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 70/161 (43%), Gaps = 8/161 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + K R + P +D++ V+ G+ + ++ + + + S + Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + + ++ + R +P EV F ++ Q G ++ L L+ +R+ + ++ Sbjct: 204 RARL-VGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLEL 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT-SPGYMNVLIN 157 + + + AK S I + F + +V+ +PG M +++N Sbjct: 263 EEEIGKLAAKMS---IPLIVFILIPIVFVIAAPGVMRMMLN 300 >gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 325 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + ++ + + E Sbjct: 166 LHNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + G L+++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 K+R D P +D++ SV AGL A+ IV +++ + EF V++ + Sbjct: 103 KKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKI 162 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ M + + E++ F V+ G ++S+ L + S +R + ++A+ Sbjct: 163 GSSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAG 222 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 +A + I L + + P ++ + Sbjct: 223 --AQASQTMLIPLMLFILPAVFIIVFGPVAVSFMYG 256 >gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + +L++KR + +P+ALD+++ V +G+ + A+ + P+ E I Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + + + G ++ ++L L R + M+A Sbjct: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A S+ K + II LP + ++ Sbjct: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315 >gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio splendidus LGP32] gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like protein [Vibrio splendidus LGP32] Length = 301 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 70/161 (43%), Gaps = 8/161 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + K R + P +D++ V+ G+ + ++ + + + S + Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + + ++ + R +P EV F ++ Q G ++ L L+ +R+ + ++ Sbjct: 204 RARL-VGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLEL 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT-SPGYMNVLIN 157 + + + AK S I + F + +V+ +PG M +++N Sbjct: 263 EEEIGKLAAKMS---IPLIVFILIPIVFVIAAPGVMRMMLN 300 >gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 293 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 P LD + +V AGL ++ A+ V + D +RSEF V+ GL+ ++++ Sbjct: 146 IRKQLPVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALR 205 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R ++E++ F + ++G L+ L S R + +A+ A+ K Sbjct: 206 RFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAPVKLVF 265 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + ++ F Sbjct: 266 PLMMFIFPVTFVVLGF 281 >gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 327 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 5 IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I + S+ V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + + + +A I+ +LPF + P ++L+ P G ++ + Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVL 305 >gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 349 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 35/174 (20%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A+ ++D P ALD+I + AG P+ A+ ++ G P+ +E V + LG S Sbjct: 164 AQRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGAS 223 Query: 65 LSESISRM---------------VRYMPL----------------QEVSFFSTVISVQSQ 93 ++E+ R+ R +P+ E++ F+ + + Sbjct: 224 MAEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEE 283 Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 G L+ AL L+ R R+ +AL+ +A + L C Sbjct: 284 SGARLAAALGRLADQTRARRQ----ERALTAARRAGVTAVAPLGLCFLPAFVAL 333 >gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 317 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 63/135 (46%), Gaps = 3/135 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDP-VRSEFRRVIETQHLGLSLSESIS 70 ++ P+ALD++V V +G+ + A+ + + S P + +EF+ + G +++ Sbjct: 167 NELPDALDLLVVCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGDALR 226 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + L +++ ++++ G ++ L S +R +++ +A+ +A + Sbjct: 227 GLSERVGLDDLNSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVLLLL 286 Query: 131 WIIGSLPFCVSTLVY 145 +IG + + + Sbjct: 287 PLIGFILPALFIAIM 301 >gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 283 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 74/188 (39%), Gaps = 3/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H KR A + +P +D + ++RAGL + +A++ + +R FR Sbjct: 92 LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + + ++ ++ + T + + ++GG +L L LS LRD + ++ Sbjct: 152 ATANFAVALDQLGERLADPVADKILTTLRITREVGGTDLGHTLTTLSAFLRDDVRTRGEL 211 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A ++A + + P+ + ++ G ++L + I +M Sbjct: 212 AARQSWIVSAARLAVAAPWILLLVLGTQ--EAAKDAYMTVGGVIVLSLGMLVSFICYRIM 269 Query: 180 RLMINFDV 187 + V Sbjct: 270 LRLGTLPV 277 >gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 323 Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ V +G+ + A + + S + E Sbjct: 165 IRNKITKRQKAIQRAWPEALDLLLICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + R ++ V T + + G L +AL +++ RD + +A Sbjct: 225 ELSFLQDRRQAYENLGRRTGVEGVRAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + ++ Sbjct: 285 EKRAAALPPKLTVPMIVFFLPVLFAVII 312 >gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 332 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K+ KR +P+ALD+++ V +G + A + + S P+ E V Sbjct: 174 VKNRATKRRLSISRAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCA 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V T + + G L AL LS+ RD++ A Sbjct: 234 ELSYLPDRKVAYDNLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLA 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ P + V+ Sbjct: 294 EKKAAALPPKLTVPMIVFFLPVLFAVI--IGPAIIKVM 329 >gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804] gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii] Length = 290 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 1/133 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + P LD++ + +GL + A+ P+R E + G+ + ++ + Sbjct: 147 ELPFVLDMMTLCIESGLGLHGALQQAAQHGPPGPLRQELHHALADMRAGMPRAAALKALA 206 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 V + ++ LG +L L + R + +A+ A+ K +I Sbjct: 207 DRADSPAVRSWIAALTQADSLGMSLGAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLPLI 266 Query: 134 GSLPFCVSTLVYF 146 G + C ++ F Sbjct: 267 GCIFPCTFIVLAF 279 >gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797] gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797] Length = 334 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 68/148 (45%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++ +R + P+ALD+++ + G+P+ A+ + + S + EF + Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFEIIRR 201 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 S+++++ + + + +V+ S +IS +LG N+S AL + + +R + +A Sbjct: 202 HADAN-SMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + K II + + L + Sbjct: 261 EENSSKTSIKLLFPIIFCMAPPIYILFF 288 >gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + I KR FP+ALD+++ V +G+ + A + + P+ EF Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021] gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 327 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61 I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 173 ISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSF 232 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + L EV + + + G +++AL L++ RD++ A+ +A Sbjct: 233 LPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 ++ K + I+ LP V+ ++ Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316 >gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 290 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D + VRAGL + +AV + + +R F S S +++R Sbjct: 114 WPEAIDHLSSGVRAGLSLPEAVCGLSARGPVALRPLFEVFAREYRATGSFSLALNRFKES 173 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG +L L LS+ LR+ +A++ A A + Sbjct: 174 AADPVADRMVAALHITREVGGTDLGAMLKTLSQFLREDARTRAELTARQSWTVTGAKLGV 233 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ T P + N +G +LL V L VM+ + Sbjct: 234 AAPWVVLGLL-ATRPETADA-YNTAQGTVLLVVGLVISLCAYSVMKRIGRL 282 >gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 285 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P +D + VRAGL + +AV + + +R F R +ES+ + Sbjct: 109 WPEVVDHLASGVRAGLSLPEAVGQLGERGPVELREPFARFAADYRATGRFTESLDLLKAR 168 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++GG +L L LS LR+ + +++A + A + Sbjct: 169 LADPVADRIIEALRLTREVGGSDLGRLLRTLSTFLREDARTRGELEARQSWTVSGARLAA 228 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V + T P + G ++L AA ++ +M + Sbjct: 229 AGPWVVLAFL-ATRPET-ARAYDSAAGVLVLAGGAACSVVAYRLMVKIGRL 277 >gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 327 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61 I KR +P+ALD+++ V +G+ + A+ + + S P+ E Sbjct: 173 ISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSF 232 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + L EV + + + G +++AL L++ RD++ A+ +A Sbjct: 233 LPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 ++ K + I+ LP V+ ++ Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316 >gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + I KR FP+ALD+++ + +G+ + A + + + + EF Sbjct: 166 LSNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R L+ V + + G L ++L +++ RD + +A Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313 >gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 296 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 139 IRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG +++ L L+ +R A+ +A Sbjct: 199 RRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRRAAKT 258 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 259 IPKATMVTLVFMLPATMILI 278 >gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM 16841] gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM 16841] Length = 220 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 61/157 (38%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRV 55 K +++ L F +A+ + +++AG + +A + ++ E ++ Sbjct: 54 KKRREQQKETLLLQFRDAMQSVAAALQAGYSMENAWRESEKEMTELYGQDGIFVGELHQI 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + + + + +++ FS V + GG+ + +A + D+ + Sbjct: 114 NQAVGMNQPIEKLLYEFALRSDCEDIQNFSDVFLFAKRSGGDFHKIIATTIEHISDKIEV 173 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + +VQ + K I+ +P + + TS + Sbjct: 174 EREVQTVISAKKMEQKIMNVIPVFIILYLNLTSGEFF 210 >gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 296 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ R P+ LD++ V +GL A+ + + P E R + +G+S Sbjct: 139 VRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG +++ L ++ +R ++ +A Sbjct: 199 RRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRRAAKT 258 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + L L+ Sbjct: 259 IPKATMVTLVFLLPATMILI 278 >gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986] gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986] Length = 266 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55 K+ +KR L +F + L+ + S +G +A A + +E R + Sbjct: 77 KYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRII 136 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 I + + + + L++V F++ + GG++ + + + +I+ D+ + Sbjct: 137 IAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDKIEI 196 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ + E + I+ +P + + G M+ +IN P ++ A Sbjct: 197 EMEIKTMLTEKENELNIMMVMPLIIMVTLSGI--GTMSAVINTPFTVIVKIFAIGLFAAA 254 Query: 176 IMVMRLMINFDV 187 M+ R +IN + Sbjct: 255 YMMGRKIINIRI 266 >gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234] gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234] gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234] Length = 323 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V +G+ + A + + S V E Sbjct: 165 IRNRITKRQQAIRRAWPEALDLLLITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 225 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + +V Sbjct: 285 EKKAAALPPKLTVPMIVFFLPVLFAVIV 312 >gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis TXDOH] Length = 271 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 111 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 170 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 171 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 230 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 231 EEKAAKLAPKMTLPMMLFVMPTVALI 256 >gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099] gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099] Length = 339 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V S + + G ++ AL L+ RD++ A Sbjct: 229 ELSYLQERKQAYENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus F0268] gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus F0268] Length = 284 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 74/189 (39%), Gaps = 7/189 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56 +KR + F L+ + ++ +G+ + D++ + + E +I Sbjct: 95 QCKEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETAEMI 154 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L++ + + + + +++ F+ + +V + GGN+ E + + I+ ++ + Sbjct: 155 LGLRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKMEIS 214 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++Q K + +P ++ ++ N + P G + + +A Sbjct: 215 EEIQTAISSNKIQFTAMMIIPVVLTGMLRGMG-SSFNRSFSTPIGIVAVTIAIGIFAGAY 273 Query: 177 MVMRLMINF 185 ++ + ++ Sbjct: 274 VMGQRIMQV 282 >gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209] gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC 33209] Length = 284 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+R A + +P+ +D + ++RAGL +++A+ + + +P+R FR Sbjct: 93 VRRRAKRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKV 119 G S S+ + + + + ++ G +L L LS LR+ ++++ Sbjct: 153 AGGSFETSLDLLKERLADPVADRIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A I + P+ V L+ + N P G +LL ++ +M Sbjct: 213 EARQSWTVNAARIAVAAPWIVLVLLAAQPNALLA--YNSPSGWILLLAGLIISVVCYRLM 270 Query: 180 RLM 182 + Sbjct: 271 LRI 273 >gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 96 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 51/94 (54%) Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ +P Sbjct: 1 NHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPN 60 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 Y+ + +D G ++L A A G +V+ M+ Sbjct: 61 YLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 94 >gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 302 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 7/150 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++K R K P+ +D++V V AGL + A+ + + + + E ++ Sbjct: 139 LSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQELGTTHPQIYEEIMQINR 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 Q G ES M + L E+ F ++ + G ++ AL+ +R ++ +A Sbjct: 199 EQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARALSTFGDNIRQKRRQRA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + AK + II L + ++ Sbjct: 259 EE----LAAKTTVKIIFPLVLFIFPSMFIV 284 >gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis E264] gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis E264] Length = 290 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 130 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 189 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 190 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 249 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 250 EEKAAKLAPKMTLPMMLFVMPTVALI 275 >gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] Length = 274 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----RSEFRRVIETQHLGLSLSESI 69 + + L ++ ++AG P+ A + PV ++EF + GLSL E++ Sbjct: 94 EALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAGLSLDEAL 150 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + L+ + V + + GG+ + + LR+++ A V A + EA+ S Sbjct: 151 GQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAARTAEARLS 210 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A ++ LP V+ P ++ L NDP G L A L GI ++R + Sbjct: 211 ARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263 >gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLG 62 +KR + FP+ +D+++ AG+ + AV + + + + + + G Sbjct: 169 QKRIYR--RGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMTLQLRAG 226 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E++ + + L+E + + +LG +L++AL S +R ++ + A+ +A Sbjct: 227 KPLREALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILHAEERAN 286 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147 ++ K + L C+ +V Sbjct: 287 ALPVKM----MIPLGLCIFPVVMMV 307 >gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 316 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R + P+ALD++V AGLP+ + + S+ + E Sbjct: 156 LKMRAASRGGRLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHA 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + ++++ + ++ V + + + G LS+AL +S R R + Sbjct: 216 ELQILSDRTKALLNLSERCGVENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDL 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + V ++ Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302 >gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei K96243] gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei 1710b] gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1] gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229] gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247] gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia pseudomallei 305] gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia pseudomallei 576] gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia pseudomallei 406e] gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280] gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei K96243] gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia pseudomallei 1710b] gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia mallei SAVP1] gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia mallei NCTC 10247] gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia pseudomallei 305] gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280] gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia pseudomallei 576] gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 314 Score = 85.9 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 295 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + +Q+GG +L L +L +LR + + +V A A + Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + + + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 319 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + A+ S ++ + + ++ SP + V+ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALVRVV 314 >gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei NCTC 13177] Length = 270 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 110 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 169 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 170 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 229 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 230 EEKAAKLAPKMTLPMMLFVMPTVALI 255 >gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 305 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 6/143 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P +D++ SV AGL A+ +V + P+ E R ++ +G E++ M + Sbjct: 160 QLPEVIDLLTVSVEAGLGFEGALTRVVEKMDGPLPQEICRALQEIRVGRPRREALREMAQ 219 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++E+ F + + Q+G +L+ L S+ +R R+ +A+ A K + Sbjct: 220 RIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKM----LL 275 Query: 135 SLPFCVST--LVYFTSPGYMNVL 155 L C+ V P + ++ Sbjct: 276 PLVLCIFPATFVVLLGPAVLRIM 298 >gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 328 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + + + E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRAALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ I KR FP+ALD+++ + +G+ + A + + P+ E Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + G LS++L +++ RD + +A Sbjct: 226 ELSYLPDRKQAYENLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313 >gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 295 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + + +Q+GG +L L +L +LR + + +V A A + Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + + + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 317 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KKR P+ALD++V V AG+ + A+ + + + SE R + Sbjct: 154 LDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLDAAIYRVCVEMASKEPVLSSELRLLTL 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + L+++ ++ G ++++ L + +R ++ A Sbjct: 214 ELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + + AK ++ L F + L+ P ++++ Sbjct: 274 EE----LAAKLPVKLLFPLIFFIFPTLLIVILGPAVISLM 309 >gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 112] Length = 264 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 104 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 163 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 164 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 223 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 224 EEKAAKLAPKMTLPMMLFVMPTVALI 249 >gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 328 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR A +P+ALD+++ + +G+ + A+ + + S + E Sbjct: 170 VSNRMTKRQASIKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L V + + G L++AL L++ RD + +A Sbjct: 230 ELSFLQDRRTALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + II LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317 >gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia pseudomallei S13] gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia pseudomallei 668] gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia pseudomallei S13] Length = 314 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis str. Marburg] gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str. Marburg] Length = 313 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 64/152 (42%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R P+ L I +RAG+ + A+ + Q P+ E +R + +G Sbjct: 91 MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSKQGEGPLYDELKRAVIEIKIGR 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++I M + Q + +I + GG+LS+ + ++ LR +K + +A Sbjct: 151 TFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M + + + + + G+M + Sbjct: 211 MMSVMFLIVAAIIAAPFALGMIMVYSGFMESV 242 >gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Photobacterium damselae subsp. damselae CIP 102761] Length = 293 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 6/150 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65 K P LD++ V+ G+ + +++ + + + R + + + L Sbjct: 144 RHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P E+ F I Q G ++ L L+ +RD + + + + + Sbjct: 203 EQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLA 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 AK S +I + + ++ +PG + +L Sbjct: 263 AKMSIPLILFI--LIPIVILIAAPGVLRML 290 >gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 314 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 339 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V S + + G ++ AL L+ RD++ A Sbjct: 229 ELSYLQERKQAYENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 318 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 68/149 (45%), Gaps = 9/149 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + + S V +E + ++ G + ++ Sbjct: 165 IVESFPDALDLLTVCVEAGLGMDAALMRVADEMTLASPEVANELQLMLLELRSGFTKEKA 224 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + +++ F++++ + G ++ +L +S L + +++A AK Sbjct: 225 LRNFALRTGAEDIDTFASMLVQAERFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 280 Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 + ++ L FC+ + P ++++ Sbjct: 281 ALKLLFPLIFCIFPALMTVLIGPAFIHIY 309 >gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 300 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K R ++ D FP+ LD++V SV AGL + AV + + + R ++ Sbjct: 141 LKSRKATREREYADGFPDLLDLLVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVL 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ S + +++ +T++ ++G +L + L S+ +R ++ ++A Sbjct: 201 ELRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRA 260 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVY 145 + +AL++ AK + I+ P ++ L+ Sbjct: 261 EEKALALSAKLTVPLILFIFPSLLTALML 289 >gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis E264] Length = 314 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 154 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299 >gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 286 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 3/183 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++R A + +P+ +D + VRAGL + +AVA + + +R+ FR E Sbjct: 98 RARRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYRATG 157 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQAL 122 ++S+ + + + + +GG +L L LS LRD + +++A Sbjct: 158 RFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGELEAR 217 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 +A + + P+ V ++ T P + + P G +L AA + +M + Sbjct: 218 QSWTVYAARMAVAAPWVVLAML-ATRPEAIRA-YDSPAGAAVLLAGAASSVAAYRLMLRV 275 Query: 183 INF 185 Sbjct: 276 ARL 278 >gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus assembly [Photobacterium damselae subsp. damselae] gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Photobacterium damselae subsp. damselae] Length = 303 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 6/150 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65 K P LD++ V+ G+ + +++ + + + R + + + L Sbjct: 154 RHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGL 212 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P E+ F I Q G ++ L L+ +RD + + + + + Sbjct: 213 EQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLA 272 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 AK S +I + + ++ +PG + +L Sbjct: 273 AKMSIPLILFI--LIPIVILIAAPGVLRML 300 >gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] Length = 295 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+ + +FP D++ +V AG A+ + P+ E R +E Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRGPLAEELRTALEQAR 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS++++ + R + V+ F + V + G L++ L ++ R+ + + Sbjct: 200 AGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTELVEK 259 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 A E A ++ LP V VY Sbjct: 260 AGRKEVVMMAPVVFLVLPVTVLFAVY 285 >gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 294 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58 ++ +K + + L + P ++ + + AGLP S AV +V S P+ E V+ Sbjct: 139 LEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHDSDPDRPLYKEMNYVLAD 198 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKA 117 G + ++ R + E++ F + I G G++ L L++ +++ A Sbjct: 199 IGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKRKDIA 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + Q +K + + ++ + +P M Sbjct: 259 RKQGEEASSKL---VFPMVMVFIAVAIIVLAPAIM 290 >gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio fischeri MJ11] Length = 293 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K K P LD++ V G+ + +++ + + + R + Sbjct: 135 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L ++ + +P E+ F + G ++ E L L+ +R + + Sbjct: 195 RANI-VGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + V L+ +PG M ++ Sbjct: 254 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGVMRMMTG 291 >gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 319 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv. viciae 3841] Length = 328 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + + + E Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317 >gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099] gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099] Length = 305 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 61/144 (42%), Gaps = 7/144 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + ++ + FP+ +D+++ AG+ + AV + + + + + V Sbjct: 146 LDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIVTL 205 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L E++ + + L E + + +LG +L++AL S +R ++ M A Sbjct: 206 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRIYSDEMRTQRIMNA 265 Query: 118 KVQALSMEAKASAWIIGSLPFCVS 141 + +A ++ K + L C+ Sbjct: 266 EERANALPVKM----MIPLGLCIF 285 >gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 330 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K++I KR A + FP++LD+++ V +G+ + A+ + + + E + Sbjct: 169 LKNMIDKRRASIMAAFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + M + + +T ++ G L AL +++ R+ + A Sbjct: 229 ELSYLPDRRMAYEGMAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ AK + I+ LP ++ Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIL 316 >gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 313 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 6/148 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R + +FP+ +++ +V AG + A+ + S + EF V+ G Sbjct: 162 IKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCRSSHGELAREFELVLGETRAGKP 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E++ R L + F I V + G L++ L ++ +RD AK + Sbjct: 222 LVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLRAQAQDVRD----TAKRDLMES 277 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150 K ++ L F V L ++ PG Sbjct: 278 AGKKEIAMMVPLVFGVLPLTVIFAVFPG 305 >gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 322 Score = 85.1 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + R ++DFP+ALD++ V AGL + ++ + + S V SE ++ Sbjct: 156 LSRRTAARQRSLVEDFPDALDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ ++++ FS ++ + G ++ +L LS L + Sbjct: 216 EMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASLRVLSDTL----RTRR 271 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 +++A AK + ++ L FC+ LV P +++ Sbjct: 272 RMRAEERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHIY 311 >gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 9] gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei BCC215] Length = 246 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 86 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 145 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 146 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 205 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 206 EEKAAKLAPKMTLPMMLFVMPTVALI 231 >gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein [Methanobacterium sp. AL-21] gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp. AL-21] Length = 310 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 76/184 (41%), Gaps = 10/184 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ L I +RAG+ + A+ I Q P+ +E +R + +G S Sbjct: 92 MERRVDAIEQTTPDFLRQISSLLRAGVGIETALEDISKQGGGPLNAELKRAVIEIKIGSS 151 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ M + + + +I ++GG+LS+ + ++ LR +K + +A M Sbjct: 152 FDEALLSMGERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRANVM 211 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLI 174 + I + + + ++ L G++++ +LI Sbjct: 212 MSVMFLIISAIIAAPFALGMIMIYSHFIQSLGKVNPLAEVAYTSAAGYLIIHSIIVGVLI 271 Query: 175 GIMV 178 GI++ Sbjct: 272 GIVL 275 >gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 328 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + KR A +P+ALD+++ + +G+ + A+ + + S + E Sbjct: 170 VSNAMNKRQASIRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L V + + G L++AL L++ RD + +A Sbjct: 230 ELSFLQDRRIALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + II LP ++ ++ Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317 >gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 321 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V AG+ + A + + S E Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei B7210] gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 7894] Length = 237 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 77 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 136 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 137 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 196 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 197 EEKAAKLAPKMTLPMMLFVMPTVALI 222 >gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 321 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ KR A+ ++P+ALD+++ V +G+ + A + + ++ + E Sbjct: 163 LKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMANQSIVLAEELALTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L V T + + G + +AL L++ RD++ +A Sbjct: 223 ELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALRVLAQESRDQRMNEA 282 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVIL 310 >gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 290 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 10/161 (6%) Query: 1 MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRR 54 +K L KK R + + P L+ IV V AG V A+ V ++ D P+ +E +R Sbjct: 131 VKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKR 190 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113 ++ G ++ + + +QEVS F+T + + + GG + AL +LSR+L +++ Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKR 250 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A+ + +K ++ + + +V +P +M + Sbjct: 251 KAIARTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C] gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C] Length = 292 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 59/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + G+ P E R ++ +G+S Sbjct: 134 IRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVS 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 194 RRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQNARRRAARA 253 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 254 VPKATFAVTMFMLPGTLILL 273 >gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 295 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +Q+GG +L L +L +LR + + +V A A + Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + + + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei DM98] Length = 249 Score = 84.7 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 89 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 148 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 149 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 208 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 209 EEKAAKLAPKMTLPMMLFVMPTVALI 234 >gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 295 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63 +R + + +D++ SV AGL + A+ + + + E +L G Sbjct: 138 RNERQEAINRELASVIDLLSISVEAGLTMERAMRHVSERLDGTLCKEIALCERDINLLGY 197 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++ R+ + VS F + + V ++ G ++S L + + R+R+ + + Sbjct: 198 SREDALRRLADRCQTEGVSMFVSSVIVSAKSGSSISRVLKMQASVARNRQFTALEEKVEK 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + K I F + +L+ + L+ G L Sbjct: 258 LPTKM---IFPMSMFIMPSLMLIVMAPAVLTLVESFSGMNL 295 >gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 286 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAGL + +AVA + + D +R FRR + + + + S+ + R Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++GG +L L LS LR+ ++A+++ A + Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELETRQGWTVNGARLAV 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 P+ + L P ++ N G ++L V A+ + M + Sbjct: 230 LAPWLLLGL-LSLHPAAVHA-YNSAAGVVILTVGASVSAVAYRAMVRIGRL 278 >gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 293 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 L P LD + +V AGL ++ A+ V + + P+R EF V+ GL+ E++ Sbjct: 146 ILKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALY 205 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 RM + ++EV+ + ++G LS++L S R + +A+ QA+ K Sbjct: 206 RMDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVF 265 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + ++ F Sbjct: 266 PLLVFIFPITFIVLGF 281 >gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5] Length = 165 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + A+ + + + + E Sbjct: 7 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 66 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + ++ V + + + G +++AL L++ RD + +A Sbjct: 67 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 126 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ ++ Sbjct: 127 EKKAAALPPKLTVPMILFFLPVLIAVIL 154 >gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 319 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia thailandensis Bt4] Length = 254 Score = 84.7 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 94 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 153 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 154 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 213 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 214 EEKAAKLAPKMTLPMMLFVMPTVALI 239 >gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 318 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGL + + V+ + SS + E R Sbjct: 158 LKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSSPEMADELRYTAA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 218 ELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTIADESRKTLLLTL 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + A+ S ++ + + ++ SP + V+ Sbjct: 278 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALLRVV 313 >gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 319 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + A+ S ++ + + ++ SP + V+ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALVRVV 314 >gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 7/159 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + I KR + FP+ALD+++ V AG+ + A+A + + SS + E + Sbjct: 165 LTNRITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V + ++ G LS AL +++ RD + A Sbjct: 225 ELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAA 284 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ A+ + I+ LP ++ P +N++ Sbjct: 285 EKKAAALPAQLTVPMILFFLPVLFIVIL---GPAILNIM 320 >gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 319 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 64/148 (43%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K+ KR A+ +P+ALD+++ V +G+ + + + + ++ + E Sbjct: 163 LKNQTTKRQAEIKKHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTA 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V ST + + G + +AL L++ RD++ +A Sbjct: 223 ELSYLTDRRIAYENLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEA 282 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP ++ Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVIL 310 >gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 324 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 5 IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I + S+ V DA+ + +R E + Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A + + + +A I+ +LPF + P ++L+ P G ++ + Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVL 302 >gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM 16294] gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM 16294] Length = 311 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 86/188 (45%), Gaps = 5/188 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59 ++ +I+ R KF A+ ++V+ ++ G+ A++ V S + R F + + + Sbjct: 124 LQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQALSKSVSVSGSKLFRDIFEKFFQEK 183 Query: 60 H-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +G E+ S + +++ +E+ F+ I + + GG S L + + + R+ M+ K Sbjct: 184 NTIGEM--EAFSNLNQFVHSKELRIFALAIKIGRESGGQFSNTLEKVEKTINYREKMQEK 241 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIM 177 V ++ E ++++ + + + G + + + G L + ++ GIM Sbjct: 242 VDVVTREGSVGSYVVVLITIFLYFALNGNFDGKLHHYFMESQYGRFQLLGISLWVFTGIM 301 Query: 178 VMRLMINF 185 + +++ Sbjct: 302 INKMLTKV 309 >gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9] gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum SS9] Length = 283 Score = 84.4 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 66/157 (42%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K K P LD++ V+ G+ + A+ + + + ++ + Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKTAD 183 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L +++ + +P +V F+ + Q G +++ L+ L+ +R + + Sbjct: 184 SARV-KGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTM 242 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK S +I + F + L+ +PG M + Sbjct: 243 EEKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277 >gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 14] Length = 253 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 93 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 152 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 153 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 212 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 213 EEKAAKLAPKMTLPMMLFVMPTVALI 238 >gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 324 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +++ + KR +P+A+D+++ V +G+ + A + + + E Sbjct: 166 VQNKVMKRQESIRLAWPDAMDLMLICVESGMSIEAAFKKVAEEVGPQSTALAEELILANA 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V +S + G + AL LS R + +A Sbjct: 226 ELSYLDERRKAYQNLAERTGLDGVKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEA 285 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + ++ LP L+ Sbjct: 286 ERKAAALPPKLTVPMMLFFLPVLFIVLI 313 >gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 324 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 157 LTRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +++ F ++ + G +++E+L LS +L + Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDML----RTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 +++A AK + ++ L FC+ + P ++V Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMCVLLGPAMIHVY 312 >gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 343 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + KR + FP+ALD+++ V AG+ + A+ + + P+ E ++ Sbjct: 165 ISNTASKRRQSIVAAFPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + T + + G L AL +++ R+ + A Sbjct: 225 ELSYLPERRQAYEGFSKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ A+ + I+ LP ++ Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVIL 312 >gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091] gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera stadtmanae DSM 3091] Length = 307 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 76/188 (40%), Gaps = 10/188 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + R + P+ L+ I + GL A+ + S P+ +E ++++ Sbjct: 85 ISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQ 144 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +ES+ + L + + +I + GGNL+E L ++S L++ +K + + Sbjct: 145 FKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKEIILLKKQRR 204 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN------VLIND----PRGHMLLGVAAA 170 A M + I ++ + + ++ LIN G++ + Sbjct: 205 ASVMMSVMLIIISSTIATPFALGMIGLYSEFIEKIGKNNPLINTIPLASFGYITIQSILV 264 Query: 171 FMLIGIMV 178 L+G+++ Sbjct: 265 SFLLGVVL 272 >gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 313 Score = 84.4 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 64/152 (42%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R P+ L I +RAG+ + A+ + Q P+ E +R + +G Sbjct: 91 MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAVIEIKIGR 150 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E+I M + + + +I + GG+LS+ + ++ LR +K + +A Sbjct: 151 TFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M + + + + + G+M + Sbjct: 211 MMSVMFLVVAAIIAAPFALGMIMVYSGFMESV 242 >gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 319 Score = 84.4 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + V+ + SS + E Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ + + E+ + + G LS+AL ++ R + Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + + ++ Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305 >gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia pseudomallei 91] Length = 266 Score = 84.4 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + ++ +R P+ALD++V AG ++ A+ + + P+ EF + Sbjct: 106 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 165 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G + +++ M + L + T + Q G ++++L LSR R + + Sbjct: 166 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 225 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + +A + K + ++ + V+ + Sbjct: 226 EEKAAKLAPKMTLPMMLFVMPTVALI 251 >gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326] gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326] Length = 296 Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + K R A+ P LD++ V+ G+ + A+ + + + ++ E Sbjct: 139 LDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAGLLKKTNE 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L + + +++ + +P E+ F + Q G ++ L L+ +RD + + Sbjct: 199 RSRL-VGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLGL 257 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK S +I + + L+ +PG + ++ Sbjct: 258 EEKIGKLAAKMSVPLILFIMIPIVILI--AAPGILRMM 293 >gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 321 Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +++ I KR +P ALD+++ +V AG+ + A + + S E Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 295 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +Q+GG +L L +L +LR + + +V A A + Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P+ + L+ + PG + + + P G M+L V A + ++M + +V Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288 >gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 314 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 15/168 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +KKR L P+ALD++V V AG+ + A+ + + + SE R + Sbjct: 151 LDSRVKKRQKAILHGLPDALDLLVVCVEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTL 210 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S E++ + + L+++ ++ G ++++ L + +R ++ A Sbjct: 211 ELRAGKSRREALKNLSNRVGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 270 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 + A + K + LV F P + V++ P G L+ Sbjct: 271 EELAAKLPVKL-----------LFPLVLFIFPTLLIVILG-PAGISLM 306 >gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X561] Length = 303 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 117 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 176 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 177 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 235 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 236 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 294 Query: 180 RLM 182 + + Sbjct: 295 KRI 297 >gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 313 Score = 84.0 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 6/148 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+R + + +FP+ +++ +V AG + A+ + + + EF ++ G Sbjct: 162 VKRRETRMMAEFPSLAELMALAVSAGESATGALDRVCRSAKGELSREFSNILAETRAGKP 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ L + F I V + G L++ L ++ +RD AK + Sbjct: 222 LVQALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRD----TAKRDLMEA 277 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150 K ++ L F V L V+ PG Sbjct: 278 AGKKEIAMMVPLVFGVLPLTVVFAVFPG 305 >gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4] gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 309 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 77/184 (41%), Gaps = 1/184 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR KF F A+ I ++ + +A+ ++ + +P++ E ++++ Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL E++ + V + + Q+ N ++ +S +++R K+ Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKIS 240 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + K++ +I ++ + Y + P Y G ++L ++ + + Sbjct: 241 SFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEA-FTTTAGKLVLLYIIISYVVTTVFVF 299 Query: 181 LMIN 184 I+ Sbjct: 300 RAID 303 >gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 301 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 3/181 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R K + F + + ++ ++ + A + P++ RV+ LG Sbjct: 117 YLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEVESPLKEHTDRVVRKFELG 176 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E++ + + + + ++ I ++ +LS ++ L +R M +V ++ Sbjct: 177 EDLEEALKEL-KSVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASM 235 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 +++AK+ + + + SP ++ + P G +++ A I + +++ Sbjct: 236 TVQAKSLMVSLAGMMAFMIVSTMSVSPDFVRA-FSTPIGKVVVAYTALSYFISTLYILKR 294 Query: 182 M 182 + Sbjct: 295 I 295 >gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio fischeri ES114] Length = 303 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K K P LD++ V G+ + +++ + + + R + Sbjct: 145 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 204 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L ++ + +P E+ F + G ++ E L L+ +R + + Sbjct: 205 RANI-VGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSL 263 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + V L+ +PG M ++ Sbjct: 264 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGVMRMMTG 301 >gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina DSM 3645] Length = 321 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 64/141 (45%), Gaps = 4/141 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64 R ++ P+ALD+I + AGLP+ ++ + + + + E + G S Sbjct: 146 RVSRIQHALPDALDMITMTTTAGLPLQKSIKRVSDEMVRSHEDLACELMILDRQAETG-S 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++I + + + EV+ +++++ ++GG+++ A + + +R + A+ + Sbjct: 205 LGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQLAEERGNQN 264 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 K +I L V L+ Sbjct: 265 SIKLLIPVIFLLAPPVYILLL 285 >gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 300 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 59/140 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 143 VRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F + + +LG ++E L L+ +R A+ +A Sbjct: 203 RRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQLAADMRRTDAQNARRRAART 262 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 263 IPKATLVTLVFMLPATMILI 282 >gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 333 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 63/157 (40%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ A + + S + E Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L+ V + + + G +++AL LS+ RD + ++A Sbjct: 229 ELSFLPERRQAYENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K + +I + ++ P ++ + Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323 >gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 318 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + G+ V SE + ++ G + ++ Sbjct: 165 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKA 224 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++++ F++++ + G ++ +L +S L + +++A AK Sbjct: 225 LRNFALRTGVEDIDTFASMLVQADRFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 280 Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 + ++ L FC+ + P ++++ Sbjct: 281 ALKLLFPLIFCIFPALMTVLMGPAFIHIY 309 >gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 290 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 1 MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRR 54 +K L KK R + + + P L+ IV V AG V AV V + P+ +E +R Sbjct: 131 VKDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKR 190 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113 ++ G ++ + + +QEVS F+T + + + GG + AL +LSR+L +++ Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKR 250 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + +K ++ + + +V +P +M + Sbjct: 251 KAIGRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4] Length = 326 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P+ALD+++ V +G+ + A+ + + S + E Sbjct: 168 ISNRITKRQHSIRRAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTA 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V + + G + +AL L++ RD + A Sbjct: 228 ELSFLQDRRTAYENLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAA 287 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP V+ ++ Sbjct: 288 EKKAAALPPKLTVPMILFFLPVLVAVIL 315 >gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis HTCC2503] gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis HTCC2503] Length = 338 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59 +L+ KR K FP++LD+++ V +G+ + A+ + + + + E+ Sbjct: 169 NLVTKRKQKIQLSFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTAEL 228 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + L+ V +T + G L +L ++ R+ + A+ Sbjct: 229 SYLQDRKVAYHNLGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNAEK 288 Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144 +A ++ K + I+ LP ++ Sbjct: 289 KAAALPPKLTVPMILFFLPVLFVVIL 314 >gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 284 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D ++ VRAGLP+ +AVA + + + +R EF + + + Sbjct: 108 WPDVVDHLISGVRAGLPLPEAVAHLGMRGPEQLREEFAIFGREYRATGRFDDCLITLKER 167 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + V +GG + L+ L+ LR ++ +++A A + Sbjct: 168 LADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQDLRVRGELEARQSWTVGGARVAA 227 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ + ++ P + N G +L+ A + +M + Sbjct: 228 AAPWLILAML-AVRPEAASA-FNTTLGGILIISGAGATALAYTIMIRIGRL 276 >gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1] gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 351 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 5/185 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL I + AG+ +++A+ + P+ EF VI Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++ + M + VS I + GGNL+E L L+ MK Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLAEDFAFEYRMKLVEYV 284 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVM 179 + + ++ ++ +V + M ++ + P ++L V M ++ Sbjct: 285 QKVNGISFVYMFMTIVMPTMLVVGILAGSLMARKLIFSVPMIAIMLVVVFPMMS---FMI 341 Query: 180 RLMIN 184 MI Sbjct: 342 INMIK 346 >gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KKR + L +FP +++ S+ AG DA+ + ++ + E R + Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAK 118 G SL +++ M R +Q + F +++ G LSE L + +R+ R+ + + Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRKL-ME 275 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++ LP V VY Sbjct: 276 LSGKKEVGMLVPVVLFVLPITVLFAVY 302 >gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 314 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R + L +FP +++ +V AG + A+ + S + E RR + Sbjct: 159 LSRAARRREQRMLAEFPTVAELLALAVSAGEGATGALERVCRLSDGELADELRRCLADAR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L ++ + L +S F I V + G L++ L ++ +R+ Q Sbjct: 219 AGANLPTALQGLADRTGLPSLSRFVDGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQ 278 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 E ++ LP V +Y Sbjct: 279 GGKREIVMMVPVVFLILPVTVLFAIY 304 >gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis 3_1_45B] gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis 3_1_45B] Length = 303 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K + +R P+ALD++V AGLP + V V+ + + E Sbjct: 143 LKSMAARRYTALERSMPDALDLMVICAEAGLPFTRIVKVVSRELELSAPVLAHELTLTNA 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S ++ + + + + + Q G L++AL N++ R + Sbjct: 203 ELEIMPERSAALRNLAERTRVPSIEGMVSTLIQAEQFGTPLAQALHNIAAESRSTLILTL 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + A+ S ++ + V +V +P M V+ Sbjct: 263 EERAGKLPARLSLPLMTLILPPVVAIV--AAPALMRVI 298 >gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 324 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 157 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ +++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + K + L++ P M VL+ H+ + + IG Sbjct: 277 EERAAKIALKL-----------LFPLIFNIFPALMCVLLGPAMIHVYRVLLPSLASIG 323 >gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18] gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18] Length = 310 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + +FP +++ SV AG A+ I S + EF ++ Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++ + +S F I+V + G L++ L ++ +RD AK + Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDN----AKRE 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTL--VYFTSPG 150 + K ++ + F + L ++ PG Sbjct: 271 LMETAGKKEIAMLAPVVFFILPLTVIFAVFPG 302 >gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 323 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + I R +DFP+ALD++ V AGL + A+ + + S+ V E ++ Sbjct: 156 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVAGELDLLLL 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++ ++++ F ++ + G +++E+L LS +LR R+ M+A Sbjct: 216 EMRSGFTKETALRNFALRTGVEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + K + L++ P M VL+ H+ + +F IG Sbjct: 276 EERAAKIALKL-----------LFPLIFNIFPALMCVLLGPAMIHVYRVLLPSFASIG 322 >gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 304 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 118 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 177 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 178 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 236 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 237 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 295 Query: 180 RLM 182 + + Sbjct: 296 KRI 298 >gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1] Length = 297 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 58/140 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R ++ +G+S Sbjct: 139 IRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMTMGVS 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L L+ +R A+ +A Sbjct: 199 RRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRRAARA 258 Query: 125 EAKASAWIIGSLPFCVSTLV 144 KA+ + + L+ Sbjct: 259 VPKATFAVTTFMLPGTLILL 278 >gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein [Thermoanaerobacter sp. X513] gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514] gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp. X513] gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 301 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L +++ K + F + + ++ ++ + A ++ +P++ RV+ Sbjct: 115 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L E++ + + + + I ++ +LS ++ L +R M ++ Sbjct: 175 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179 A++++AK+ + + + SP ++ + P G +++ AA I + ++ Sbjct: 234 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 292 Query: 180 RLM 182 + + Sbjct: 293 KRI 295 >gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 333 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+ I KR + FP+ALD+++ V AG+ + A+ + + +S + E + Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSA 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + V ST + Q G L AL +++ RD + A Sbjct: 220 ELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAA 279 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ A+ + II LP ++ Sbjct: 280 EKKAAALPAQLTVPMIIFFLPVLFVVIL 307 >gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 290 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 1 MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRR 54 +K L KK R + + P L+ IV V AG V A+ V +S P+ +E +R Sbjct: 131 VKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKR 190 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113 ++ G ++ + + +QEVS F+T + + + GG + AL +LSR+L +++ Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKR 250 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + +K ++ + + +V +P +M + Sbjct: 251 KAITRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288 >gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 325 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 67/159 (42%), Gaps = 7/159 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + + KR +P+ALD+++ V +G+ + + + + ++ + E Sbjct: 167 ISNRVTKRQKSIKRAWPDALDLMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++ V + + + G +S+AL +++ RD + +A Sbjct: 227 ELSFLQDRRTAFDNLAARTQIEIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEA 286 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + I+ LP ++ ++ P + V+ Sbjct: 287 EKKAAALPPKLTVPMIVFFLPVLMAVIL---GPAIIQVM 322 >gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] Length = 283 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 68/152 (44%), Gaps = 6/152 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLS 66 K + P LDI+ V+ G+ + + + + + + + ++ + + + Sbjct: 132 RKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFDSDLSYQIKKTSDAGKI-HGIE 190 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P EV F I Q G +++ L++L+ +R + +K + + + A Sbjct: 191 KALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDLAEDMRRIQLLKVEEKVGKLSA 250 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 K S +I + F + L+ +PG M + D Sbjct: 251 KMSVPLILLIMFPIVILI--LAPGVMQLDFTD 280 >gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 297 Score = 83.2 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 3/166 (1%) Query: 23 IVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++R + AG + AVA V + +PVR R+ E G ++ + Sbjct: 113 MLRDLMAGAAGLHQAVAATVPIAPEPVREPVARLAERLRAGQPTQGALRAFADEVDNPTA 172 Query: 82 SFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + +S + + +L L +L+ R++ M +V A + S II + Sbjct: 173 DLVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRIIVGTTVGM 232 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + L+ +PGY+ + G ++L ++ + M FD Sbjct: 233 AALLMAFNPGYLEP-FDGFLGQVVLAGIGGLWAGALVWLSRMSRFD 277 >gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 296 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 L P LD+I +AGL ++ A+A V + + EF R++ G S ++++ Sbjct: 149 ILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGQEFDRMMREMRTGASRMDALN 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + + ++ LG +L++ L+ +S R + A+ A+ K Sbjct: 209 ALADRLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIG 268 Query: 131 WIIGSLPFCVSTLVYF 146 ++ + +++F Sbjct: 269 PLVIFIFPVTFIIIFF 284 >gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565] Length = 294 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K A P+A+D++V SV AGL + A+ + + +F R Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLEALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282 >gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20] gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 281 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A + + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 L-TSLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 281 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A + + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 L-TSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 319 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 68/149 (45%), Gaps = 9/149 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68 ++ FP+ALD++ V AGL + A+ + G+ V SE + ++ G + ++ Sbjct: 166 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEMQLASPEVASELQLMLLELRSGFTKEKA 225 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++ F++++ + G ++ +L +S L + +++A AK Sbjct: 226 LRNFALRTGVDDIDTFASMLVQADRFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 281 Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155 + ++ L FC+ + P ++++ Sbjct: 282 ALKLLFPLIFCIFPALMTVLMGPAFIHIY 310 >gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 292 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + D P+ LD++ +VR+G+ AV + P+ E R I + LG++ Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + V+ F + +LG L++AL ++S +R + + + A + Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + + L+ Sbjct: 262 KIAIVVTTMILPATLILIL 280 >gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 309 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A+ L + P +++ +V AG + A+ +V Q+ + E R + Sbjct: 154 LGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRGELADELARTLAEAR 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+ ++ + L ++ F+ ++V + G L++ L ++ +R+ + + Sbjct: 214 AGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVRE----EGRRA 269 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + ++ + F + + + Sbjct: 270 LMQTGGRKEVLMMVPVVFLILPVTVLFA 297 >gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234] gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234] Length = 327 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61 I KR +P+ALD+++ V +G+ + A+ + + + + E Sbjct: 173 ISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTAELSF 232 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + L+EV + + G +++AL L++ RD++ A+ +A Sbjct: 233 LPDRRIALENLGLRSGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAAEKKA 292 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 ++ K + I+ LP V+ ++ Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316 >gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4] gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4] Length = 280 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ K K P LD++ V+ G+ + A+ + + ++ + + +R + Sbjct: 123 LQMRRKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L ++++ + +P V F I Q G ++++ L++L+ +R + + Sbjct: 183 SAKI-QGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTV 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + F + L+ +PG M + N Sbjct: 242 EEKVGKLSAKMSLPLIIFIMFPIVILI--LAPGIMQMNFN 279 >gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 307 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ K+ K +ALD++V AGL + A+ + G+ + V EF + Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G ++ +S++ + L + ++ + Q G L++AL LS LR + + Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + CV +V Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295 >gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 317 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ +V + E + Sbjct: 162 LSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALGRGDLIDELGTTLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEVLRSQATDVRE--AARQDLM 279 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + + T+V+ PG Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311 >gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 323 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 72/159 (45%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + L++ R +D P+ALD++ V AGL + A+ + + S ++ E V+ Sbjct: 157 LSRLVEARQRTIFEDLPDALDLMTVCVEAGLGLDAAMQRVAEEIGVKSRALKDELELVLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +++ + ++++ ++++ + G ++ ++L R+ D + Sbjct: 217 ELRAGSARDKALRNLALRTGVEDIDTLTSMLIQADRFGTSVGDSL----RVFIDALRTRR 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154 +++A AK + ++ L FC+ +V P M V Sbjct: 273 RLRAEEQAAKIALKLLFPLMFCIFPTLIVVLIGPAAMRV 311 >gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + + KR A + FP+ALD+++ V AG+ + A+ + + + E ++ Sbjct: 165 ISNAASKRRASIVTAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVA 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + R + T + + G L AL +++ R+ + A Sbjct: 225 ELSYLPERRMAYEGLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ A+ + +I + ++ P +N++ Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVI--LGPAILNIM 320 >gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201] gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 314 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + +FP +++ +V AG A+ + + + EFR V+ Sbjct: 159 LSRSIRRREKLMVAEFPAIAELMALAVGAGESTVGALERVCRVAEGELSGEFRAVLAQTR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR-KNMKAKV 119 G L+ ++ + + F I V + G L+E L ++ +RD K + +V Sbjct: 219 AGSGLTTALQDFSARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEV 278 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 A + LP V+ V+ Sbjct: 279 AGKKEIAMLVPVVFFILPLSVAFAVF 304 >gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 312 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 6/148 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R + + +FP+ +++ +V AG + A+ + + + EF ++ G Sbjct: 161 VRRREERMMAEFPSLAELMALAVGAGESATGALDRVCRSARGELSKEFSTILAETRAGKP 220 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ L + F I V + G L++ L ++ +RD AK + Sbjct: 221 LVNALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRD----TAKRDLMEA 276 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150 K ++ L F V L V+ PG Sbjct: 277 AGKKEIAMMVPLVFGVLPLTVVFAVFPG 304 >gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5] Length = 307 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ K+ K +ALD++V AGL + A+ + G+ + V EF + Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G ++ +S++ + L + ++ + Q G L++AL LS LR + + Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + CV +V Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295 >gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 321 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + I KR +P ALD+++ +V +G+ + A + + S E Sbjct: 164 VSNRITKRQQSIRRSWPEALDLLLITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + + ++ V T + + G L +AL +++ RD + +A Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + +I + ++ +P + ++ Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319 >gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449] gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp. salmonicida A449] Length = 294 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K + P+A+D++V SV AGL + A+ + G + +F R Sbjct: 135 LQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282 >gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus DSM 2088] gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus DSM 2088] Length = 339 Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 7/181 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P+ L + +RAG+ + A+ + P+ E +R +G S Sbjct: 92 ERRRGTIEESTPDFLTQLASELRAGISLESAIDDLTKYGEGPLYDELKRTAIEIKMGRSF 151 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+ M + ++++ +IS + G +LS L +++ LR +K + ++ M Sbjct: 152 ESSLIAMANRLKSEQLNRTFRMISEGRRAGASLSRVLESVAEDLRQVLALKRERKSNVMM 211 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I G + + + + L + G A L+G V + ++N Sbjct: 212 YAMFFLIAGLIGAPLVVGLISIVIRFFIDLYSAS------GAIAGMTLVGN-VQQRLVNL 264 Query: 186 D 186 Sbjct: 265 R 265 >gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649] gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649] Length = 310 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 2/151 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R + L +FP +++ +V AG A+ + S + E RR + Sbjct: 155 LSRRANQREERMLAEFPTVAELLALAVGAGEGAVGALERVCRLSRGELSDELRRCLGDAR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + L ++ F I + + G L++ L ++ +R+ + + Sbjct: 215 AGASLPVALHGLADRTGLMSLTRFVDGIVIAVERGTPLADVLRAQAQDVRE--EGRRAIM 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + + + I T+++ PG+ Sbjct: 273 EAGGKKEIAMMIPVVFLVLPITVLFAIFPGF 303 >gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 292 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59 + IK R + PN LD+++ SV +G + A+ ++ + DP+ E R Sbjct: 133 LSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQM 192 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG ++++ M + + +++ I +LG ++ + L + R+++ A+ Sbjct: 193 QLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNKRFSLAEK 252 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ + V +++ Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIF 278 >gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 286 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +P+ +D + VRAG+ + +A+A + + + +R F S+ + Sbjct: 108 DAWPDCVDHVASGVRAGMALPEALAQLAVRGPEELRPAFAGFAHDYRATGRFHVSLDALK 167 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++GG +L L LS LR+ + +++++A +A + Sbjct: 168 ERLSDPVADRLVESLRIAREVGGSDLGVVLRTLSSFLREEAHTRSEMEARQSWTVNAARL 227 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ N G ++L + + ++M + Sbjct: 228 GLAAPWIVLAMLATRGDSL--AAYNSTTGALVLVLGGLVSVGAYLLMMRLGRI 278 >gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP] gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP] Length = 290 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +IK + + + D P +D++ +V+ G+ + A + + + + R+I Sbjct: 132 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 191 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + Sbjct: 192 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 250 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M VL Sbjct: 251 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 286 >gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens TC1] gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 313 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 4/143 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + IK+R ++ L +FP+ +++ +V AG A+ + S+ + +EF ++ Sbjct: 158 LGLRIKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVSRSSNGELSAEFATILADTR 217 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+E++ L + F + V + G L++ L + +RD AK Sbjct: 218 SGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQAADVRD----AAKRD 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 + + ++ L F V L Sbjct: 274 LMESAGRKEIAMMVPLVFGVLPL 296 >gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio parahaemolyticus 16] gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio parahaemolyticus 16] Length = 248 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 6/153 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLG 62 K R ++ P LD++ V+ G+ + A+ + + + ++ + L Sbjct: 96 KARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVGFDKELAGLLKKTNDRARL- 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +++ + +P E+ F + Q G ++ L L+ +RD + + + + Sbjct: 155 VGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLTLEEKIG 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + AK S +I + + L+ +PG + ++ Sbjct: 215 KLAAKMSVPLILFIMMPIVILI--AAPGILRMM 245 >gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 82.1 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ +K A P+A+D++V SV AGL + A+ + G + +F R Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + ++R+ L E+ + + + Q G L+E + +S+ R + + Sbjct: 195 EIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 + QA S+ K + + + + L+ Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282 >gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 281 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K K P LD++ V+ G+ V A+A + + + ++ + Sbjct: 125 LAMRKKMLVKKTSRQLPYMLDMMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKTAD 184 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 T + L +++ + +P EV FS + Q G +++ LA+L+ +R + + Sbjct: 185 TSRI-TGLEKALLELSERIPTPEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAM 243 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S +I + F + L+ +PG+M + Sbjct: 244 EESIGKLAAKMSVPLILFIMFPIVVLI--LAPGFMQL 278 >gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415] Length = 281 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A + + + R++ Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 L-TSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi] Length = 281 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +IK + + + D P +D++ +V+ G+ + A + + + + R+I Sbjct: 123 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + Sbjct: 183 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M VL Sbjct: 242 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 277 >gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum 3TCK] gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium profundum 3TCK] Length = 283 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K K P LD++ V+ G+ + A+ + + + ++ + Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKTAD 183 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +++ + +P +V F+ + Q G +++ L+ L+ +R + + Sbjct: 184 GARV-KGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTM 242 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK S +I + F + L+ +PG M + Sbjct: 243 EEKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277 >gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 316 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K R K P+ALD++V AGLP+ + + SS + E Sbjct: 156 LKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSPELAEEIGYTHA 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S+++ + + V+ + + + G LS+AL +S R ++ Sbjct: 216 ELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTISVESRKNMVLEL 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + A+ S ++ + V ++ Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302 >gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296] Length = 310 Score = 81.7 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR + + +FP +++ SV AG A+ I S + EF ++ Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++ + +S F I+V + G L++ L ++ +RD AK + Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDN----AKRE 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTL--VYFTSPG 150 + K ++ + F + L ++ PG Sbjct: 271 LMETAGKKEIAMLAPVVFFILPLTVIFAVFPG 302 >gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 286 Score = 81.7 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + R + +P+ +D + +VRAG+ + + +A + + P+R F R E Sbjct: 96 RRRRTRMHDLRELWPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 S S S+ R+ + + + ++GG +L L LS LR+ +A+++ Sbjct: 156 GSFSASLDRLADDLADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + P+ V ++ + G + P G ++L ++ M+M+ Sbjct: 216 RQSWTVNAARLALGAPWVVLLML--ATRGETVRAYDSPTGVVVLVTGGGVSVLAYMIMKW 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 333 Score = 81.7 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + KR +P+ALD+++ V +G+ A + + S + E Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V + + + G +S+AL LS+ RD + + A Sbjct: 229 ELSFLPERRQAYENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A ++ K + +I + ++ P ++ + Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323 >gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 291 Score = 81.7 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 2/156 (1%) Query: 32 PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + A+ S+ +R +++ + L +++ R + + + Sbjct: 123 GLEQAIPATAATSAPVLRPSLNLLVDRLRVREPLPDALLRFADDVDDPSADVVVAALVLN 182 Query: 92 SQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++L G L + L L+ R+ +++ +++A + S I+ + V ++ + Sbjct: 183 ARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQIVLLIVLGVMGVLSVFNRS 242 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 Y+ + G + L V A +++G+ +R + + Sbjct: 243 YVAP-YSTFSGQVALIVVAGLLVLGLTWLRRLARVE 277 >gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 301 Score = 81.7 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 56/134 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+R + D P+ +D++ +V AG+ A+ + + P+ E + ++ G S Sbjct: 143 VKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGGPLADEIQLTLQHVDNGAS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + V F + +LG L + L +++ +R A +A + Sbjct: 203 MRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAADMRRSSAQAALQRASRI 262 Query: 125 EAKASAWIIGSLPF 138 E + S + Sbjct: 263 EPRVSLVTTTVMVP 276 >gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 269 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R A P+ + ++ AG + A+ P+ E RV+ Sbjct: 111 LNSRVARRKALIRRQLPDFSVFLATALTAGADLPTALREAGTHVGGPIGEEVERVLLEFG 170 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +L ++ M + E+ G +++E + + DR+ + + Sbjct: 171 LGRNLVSALEDMADRCDMDELRLLLWSAGRAYAYGTSVAEEVRAQA----DRQRSMRRFE 226 Query: 121 ALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155 + K + ++I + F + +V P + + Sbjct: 227 VMEAAGKLAIYLIFPILFFMLLPLMVVVMYPAAVALY 263 >gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 312 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + + +FP +++ +V AG A+ + + + E RR + Sbjct: 157 LTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATARGELSVEIRRTLADVR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ +++ M L ++ F+ ++V + G L+E L ++ +R+ + Sbjct: 217 AGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVLRAQAQDVRES----GRRA 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + ++ + F + + + Sbjct: 273 LMEAGGRKEVVMLVPVVFLILPITVVFA 300 >gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 281 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 15/174 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + +K R P+ALD++V V AG+ + A+ + + + +E R + Sbjct: 118 LDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRLLTL 177 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + E++ + + L++V ++ G ++++ L + +R ++ A Sbjct: 178 ELRAGKARREALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 237 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + A + K + L++F P + V++ P G + + Sbjct: 238 EELAAKLPVKL-----------LMPLIFFIFPTLLIVILG-PAGIRIFQMFGGM 279 >gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 311 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R+ + L +FP +++ +V AG + A+ +V + EF R + Sbjct: 156 LSREAQRRSRRMLAEFPTVAELLALAVGAGESPAAALERVVRVCRGELSVEFARALSEAR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + PL +S F + V Q G L++ L + +R+ AK Sbjct: 216 TGGSLVTALENLAARNPLDIMSRFVDGMIVAMQRGTPLADVLRAQASDVRE----AAKRS 271 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + + ++ + F + L++ P ++++ Sbjct: 272 LLDIGGRKEIGMMVPVVFLILPITLLFALFPSFVSL 307 >gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens AM1] gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4] gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens AM1] gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein [Methylobacterium extorquens DM4] Length = 323 Score = 81.3 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + ++ KR A+ +P+ALD+ + V +G+ V +A + + + + E + Sbjct: 164 LSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVASQSAVLAEELALLTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V +T + + G + +AL L++ RD + +A Sbjct: 224 ELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALRVLAQESRDYRMTEA 283 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A S+ K + I+ LP L+ Sbjct: 284 EKKAASLPPKLTVPMILFFLPVLFVVLL 311 >gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 340 Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KR +P+ LD+++ V +G+ V A+ + + + EF Sbjct: 169 VNNRATKRKQSIQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ + L V S + + G ++ AL L+ RD + A Sbjct: 229 ELSYLPERKQAYENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAA 288 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP + ++ Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316 >gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 291 Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 8/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + +++R L + P L+ IV V AG V A+ + + + + P+ E ++ Sbjct: 134 LHRKVQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQ 193 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115 + G S +++ + +QEVS F+T + + + GG + AL +LS L +++ Sbjct: 194 KEWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKA 253 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + +K + + ++ L+ +P +M Sbjct: 254 VGRTLGEQASSKL---VFPMVLLFMAVLILVGAPAFM 287 >gi|289769864|ref|ZP_06529242.1| integral membrane protein [Streptomyces lividans TK24] gi|289700063|gb|EFD67492.1| integral membrane protein [Streptomyces lividans TK24] Length = 330 Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L +++ + Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 227 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 279 >gi|21222912|ref|NP_628691.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|7242744|emb|CAB77318.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 345 Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L +++ + Sbjct: 122 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 181 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 182 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 241 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 242 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 294 >gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus DSM 13965] Length = 260 Score = 80.9 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 7/173 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----RSEFRRVIETQHLGLSLSESI 69 + L ++ ++AG P+ A + + PV + EF + GL L E++ Sbjct: 81 EALEGLLVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEF---LAALGAGLPLEEAL 137 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 L+ + V S + GG+++ + + LR+++ A+V A + EA+ S Sbjct: 138 GLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAARTAEARLS 197 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A ++ LP V+ P ++ L DP G L A L G+ ++R + Sbjct: 198 ARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLRRL 250 >gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio harveyi HY01] gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116] gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio harveyi HY01] gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116] Length = 280 Score = 80.9 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ K K P LD++ V+ G+ + A+ + + ++ + + +R + Sbjct: 123 LQMRRKILIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L ++++ + +P + F I Q G ++++ L++L+ +R + + Sbjct: 183 SAKI-HGLEKALNDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILTV 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + F + L+ +PG M + +N Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPGIMQMTLN 279 >gi|256785972|ref|ZP_05524403.1| integral membrane protein [Streptomyces lividans TK24] Length = 347 Score = 80.5 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L +++ + Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 183 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 184 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G ++L +G +R + + Sbjct: 244 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 296 >gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 316 Score = 80.5 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESI 69 FP+ +D+++ AG+ + AV + + + + + + G L E++ Sbjct: 169 RRAFPDFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNLQLRAGKPLREAL 228 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + L E + + +LG +L++AL S +R ++ + A+ +A S+ K Sbjct: 229 RELADRIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSAEERANSLPVKMM 288 Query: 130 AWI-IGSLPFCVSTLVY 145 + + P + ++ Sbjct: 289 IPLGLCIFPVVMMVIML 305 >gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon 178 str. F0338] gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon 178 str. F0338] Length = 178 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 4/155 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R + P+A +++ +V AG V A+ + S + E R + Sbjct: 23 LTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVASLSHSDLGDELARAVADIR 82 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG +++ + +S +S G L+ L + +R +R+ + + Sbjct: 83 LGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLAAVLHDQARDIREASRQRLMEE 142 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYMNV 154 E ++ LP V +Y PG M + Sbjct: 143 GGKREIAMLFPVVFLILPVTVLFALY---PGLMAL 174 >gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 292 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + IK K P LD++ V G+ + ++A + + + R + Sbjct: 134 LNSRIKTLRDKLSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTND 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + LS ++ + +P E+ F + G ++ L L+ +R+ + + Sbjct: 194 RARI-VGLSVALDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSL 252 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK S +I + V L+ +PG M ++ Sbjct: 253 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGIMRMM 288 >gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC BAA-2122] gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC BAA-2122] Length = 280 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSE 67 K P LD++ ++ G+ + ++ + + + + + +R ++ + L + Sbjct: 133 KISAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRTSDSAKI-HGLEK 191 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ +P V F I Q G ++++ L +LS +R + + + + + AK Sbjct: 192 ALNDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAK 251 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 S +I + F + L+ +PG M ++IN Sbjct: 252 MSLPLILLIMFPIVVLI--LAPGIMQMMIN 279 >gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 329 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 4/144 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61 KR +P+ALD+++ V +G+ V A + + + E Sbjct: 173 ASKRKKSIQLAWPDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTAELSF 232 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + L+ V S + + G +S+AL L+ R+ + A+ +A Sbjct: 233 LQERRQAYENLAARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAAEKKA 292 Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144 ++ K + I+ LP + ++ Sbjct: 293 AALPPKLTVPMILFFLPVLFAIIL 316 >gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter piechaudii ATCC 43553] gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter piechaudii ATCC 43553] Length = 236 Score = 80.5 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + L +KR D P D++ V AGL V A+ +R + + Sbjct: 79 LHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQSGPKGALRDALAQALAEM 138 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++ ++I + ++ ++ LG +L L + R ++++A+ Sbjct: 139 RAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQAAQCRSDRHVRAEQ 198 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 QA+ K +IG + C ++ F Sbjct: 199 QAMQAPVKMLLPLIGCIFPCTFIVLAF 225 >gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1] Length = 282 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 72/159 (45%), Gaps = 10/159 (6%) Query: 3 HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 L++ R + P LD++ V+ G+ + A+ + + ++ + + +R Sbjct: 121 MLLQLRRKVLIGKTSAQLPYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRT 180 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 ++ + L ++++ + +P V F I Q G ++++ L++L+ +R + + Sbjct: 181 SDSAKI-HGLEKALNDLSDRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQIL 239 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK S +I + F + L+ +PG M + Sbjct: 240 AVEEKVGKLSAKMSIPLILFIMFPIVILI--LAPGIMQM 276 >gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 319 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 7/159 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + +L+ KR +P+ALD+++ + +G+ V A+ + + + E Sbjct: 159 ISNLVTKRQDSIRRAWPDALDLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTA 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L+ + + + + G ++ ++L L R + M+A Sbjct: 219 ELSFLLNRQVAFENFYNRTQMDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEA 278 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + I+ LP + ++ P +N++ Sbjct: 279 EKKAAALSPKLTVPMILFFLPVLMLVII---GPAILNIM 314 >gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E] gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 292 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIET 58 ++K++ + D P +D++ V+ G+ ++ A+ + + + R+I Sbjct: 136 NMILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRK 195 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + L ++ + +P +E+ F+TV+ G ++ L LS +R+ + + + Sbjct: 196 AEI-IGLPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIE 254 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 Q ++ AK S +I + F + L+ +PG M V Sbjct: 255 EQLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVF 289 >gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + ++ KR A+ +P+ALD+ + V +G+ V +A + + + + E + Sbjct: 164 LSNMTTKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTA 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ V +T + + G + +AL L++ RD + +A Sbjct: 224 ELSFLPERRVAYENLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEA 283 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144 + +A ++ K + I+ LP L+ Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFVVLL 311 >gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + KKR + +P+ALD+ + V +G+ + +A + + + + E + Sbjct: 167 LVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIATSSVVLAEELALMTA 226 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ +V L+ V +T + + G + +AL LS+ RD + +A Sbjct: 227 EMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALRVLSQESRDMRMNEA 286 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A + K + +I + ++ +P + ++ Sbjct: 287 EKKAAGLPPKLTVPMILFFLPVLFVVI--ITPAVIQIMRT 324 >gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 288 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 132 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 191 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ Sbjct: 192 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 251 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +++ +K + + +V +P M + Sbjct: 252 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 287 >gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 288 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 4/146 (2%) Query: 3 HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 L+ +R + P+ALD++ + AG A+A + + + F RV + Sbjct: 133 WLLARRAEWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIAEAFARVAKEA 192 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S SE++ + + ++FF+ + + G +L + + ++ +R + ++ Sbjct: 193 AY-SSRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTERRLRVDD 251 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 + K ++ + + L+ Sbjct: 252 MTNKLSTKMLFPMLLLMLPSIIMLML 277 >gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1] gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1] Length = 339 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + ++KR FP+ALD+IV V AGL V A+ + + + + E Sbjct: 180 LTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTEEMMISAPEMAEEIGLTAA 239 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +V +T + + G +++AL +S+ R+ + A Sbjct: 240 ELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVAQALKVISQENREGRMAAA 299 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A ++ AK + +I + ++ Sbjct: 300 EKKAAALPAKLTVPMIVFFLPVLFLII 326 >gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 286 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P +D + +RAGL + +A+A I + +R F E E + + Sbjct: 110 WPEVVDHLASGIRAGLALPEALAQIGERGPVELREPFVAFAEDYRATGRFGECLDLLKAR 169 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +GG +L L LS LR+ + +++A +A + Sbjct: 170 LADPVADRIVEALRMTRDVGGTDLGRLLRTLSTFLREDLRTRGELEARQSWTVNAARLAA 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ S + G ++L AA ++ +M + Sbjct: 230 AAPWLVLGLLATRSEA--AAAYDSTAGLLVLAAGAASTVVAYALMLRIARL 278 >gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 312 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 5/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 L R + + A+ I+ + +G V A+ ++ + + E + Sbjct: 152 LASARQMRIGEQVTTAVQILRMLLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRAR 211 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L E + + R + + E+ ++ + GGN+ E L L+ ++ DR+ + + + Sbjct: 212 SGEGLVEVLDGLARDLEVPELDDTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEK 271 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M AK S ++ L + LV +PG ++++ Sbjct: 272 VTKMSAKMSVVMMLFL--FPALLVVLAAPGLISLV 304 >gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01] gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01] Length = 283 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 3/149 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + + P+A+D++V V +GL + + + S + E+ Sbjct: 122 LDWRVNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTAT 181 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S ++S + + + L +++ T ++ Q G L+EAL ++ R ++ Sbjct: 182 EISVLDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLEL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + AK S ++ + V ++ Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVGIIVV 270 >gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis MCE9] gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis MCE9] Length = 267 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 +K I KR + + FP LD++ S+ +G + ++ ++ E I Sbjct: 111 IKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFNSLPNGVLKDELGFTIREM 170 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G E+I M + L V + I QLG L+ A + +R ++ + A+ Sbjct: 171 QAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRAQASYIRKQRYLMAEK 230 Query: 120 QALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVL 155 A K + L F + + P +M +L Sbjct: 231 LAFEAPVKM----LFPLVFFIFPCTFIVLLFPVFMQIL 264 >gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385] gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385] Length = 305 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 6/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHL 61 K+R + + +A+D++V S+ AGL + A+ + + +F R + Sbjct: 153 AKQRQQQIVA---DAMDLMVISIEAGLSLDRALERVGHYLLDVEPMLAKQFLRTHAEIQV 209 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + ++ LQE+ + +++ + G L+E + N+S+ R + M + QA Sbjct: 210 LGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPLAETMRNISQDARQMRKMALQEQA 269 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + + + + + + L+ Sbjct: 270 GKLPGRITLIQMAFIMLPLLVLII 293 >gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 280 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ K ++ P LD++ V+ G+ + A+ + + ++ + + +R + Sbjct: 123 LQMRRKMLISRTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L ++++ + +P V F I Q G +++ L++L+ +R + + Sbjct: 183 SAKI-HGLEKALNDLSERIPTPPVRSFVLTIIQNLQYGTSVASVLSDLAEDMRKVQILTV 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + F + L+ +P M + +N Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPSIMQMTLN 279 >gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 359 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 73/179 (40%), Gaps = 4/179 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+++ + P AL + +++GL + D++ + + EF R +E G + Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M + + I+ GG+LS+ L ++ + MK K + + + Sbjct: 238 NALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297 Query: 127 -KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 + L + ++ + M ++ P +++ + ML+G +++ + Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAAATVMGSVL-PPIAIIMIYLFLFPMLVGFMAFMIKRL 355 >gi|291452023|ref|ZP_06591413.1| integral membrane protein [Streptomyces albus J1074] gi|291354972|gb|EFE81874.1| integral membrane protein [Streptomyces albus J1074] Length = 289 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L E++ + Sbjct: 75 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 134 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 135 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 194 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 195 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 247 >gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19] gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19] Length = 325 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 17/186 (9%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ P+AL +V +RAGL + + + + + EFR V+ G + E Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161 Query: 68 SISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125 +I M + + + + + GG L++ L + +R+ + ++ + +A++ Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISM-SGGALADVLEAVENDIREVRRIELERKAITTMP 220 Query: 126 --AKASAWIIGSLPFCV-------STLVYFTSPGY-MNVLI---NDPRGHMLLGVAAAF- 171 A A +I LP V ++ P Y M + DP L + Sbjct: 221 CLALALGGLISGLPVGVSIGAVIGVAMMERMGPTYAMLPMYLQAKDPLASYPLVLGLLSG 280 Query: 172 MLIGIM 177 M IGI+ Sbjct: 281 MAIGII 286 >gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 317 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R ++ P+ ++++ +V AG A+ +V + E + Sbjct: 162 LSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPAIERVVALGRGDLIDELGATLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L++ L + + +R+ + + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLADVLRSQATDVRE--AARQDLM 279 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + + T+V+ PG Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311 >gi|239980169|ref|ZP_04702693.1| integral membrane protein [Streptomyces albus J1074] Length = 338 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L E++ + Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 183 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 184 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 244 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 296 >gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus DSM 2088] gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus DSM 2088] Length = 355 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 1/149 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P AL + +RAGL DA+ + + EF R +E G S + Sbjct: 174 RADEISRELPYALRQMATELRAGLGFHDAMKSVATSGYGALSEEFARTLEEIKYGESTTR 233 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + +P + I + GG++++AL ++ + MK + + + + Sbjct: 234 ALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNSF 293 Query: 128 ASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155 + IG + V ++ + +M + Sbjct: 294 MMIYMFIGIVGPAVLPILLIIATIFMPTM 322 >gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 283 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 166 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG +L L +LS++LR+ + +++A A + Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ T P +LL A +I +M + Sbjct: 227 AAPWLVLALLS-TRPQAAAAYATTAGAVILLVGAVVS-VIAYRLMLRLGRL 275 >gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto TadC [Moritella sp. PE36] gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto TadC [Moritella sp. PE36] Length = 296 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 + K+ T K + P LD++ V+ G+ + A++ + + ++ + + + + Sbjct: 139 LNLRAKQLTEKISNKLPYLLDLMAVCVQTGMTLESAISYLSKEMTEFDKDLTNVLVKTND 198 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L+ ++ + +P E+ F + Q G ++S+ L LS +R + + Sbjct: 199 RARI-VGLAMALDELYLRVPSNEMRSFVMTLKQSLQFGSSISQVLTTLSGDIRQVQILGL 257 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S +I + V L+ +PG M ++IN Sbjct: 258 EEKIGKLAAKMSIPLIVFIMVPVVILI--AAPGIMRMMIN 295 >gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 317 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ IV + E + Sbjct: 162 LSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 221 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + + Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQATDVRE--AARQDLM 279 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + + T+V+ PG Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311 >gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 284 Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 2/156 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KR +P+ +D + ++RAGL + +A+ + + +R F Sbjct: 93 VRWRARKRRNSLRQLWPDIVDHLRSAIRAGLALPEALIQLGHNGPEELRELFLDFGADYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + + ++ + + + ++GG +L L LS LRD ++++ Sbjct: 153 AAGNFEAAADKLKERLADPVADRIIEALRMTREVGGSDLGRMLGTLSGFLRDSARTRSEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +A +A + + P+ V ++ + P M Sbjct: 213 EARQSWTVNAARLAVAAPWIVLVVM-ASRPEAMVAF 247 >gi|302553401|ref|ZP_07305743.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471019|gb|EFL34112.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 315 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L E++ + Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRARTPLPEALQHLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ P G +L +G +R + + Sbjct: 227 VVAVSIAFVLGLSIFNRDFVEP-YGTPAGQAVLACVCGLFALGFWWLRKLSTIE 279 >gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a] gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia alni ACN14a] Length = 357 Score = 79.0 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 R + +P+ +D + +VRAG+ + + +A + + +R F R E Sbjct: 96 RRRHGRIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSAT 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121 S S + R+ + + + ++GG +L L LS LR+ +A+++ Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +A + + P+ V L+ + P G ++L V + ++M+ Sbjct: 216 RQGWTVNAARLALAAPWIVLLLLATRGQN--VQAYDSPTGVLVLVVGGGVSALAYLLMKR 273 Query: 182 MINF 185 + Sbjct: 274 IGRL 277 >gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1] gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 320 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 67/145 (46%), Gaps = 3/145 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQ 59 H+++++T P+AL+++V V AGL + + + + ++ + E Sbjct: 159 HVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVLTWAEI 218 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ S +++++ + V +++S QLG L+++L + +R+ + M + Sbjct: 219 NVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLLEE 278 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 +A + A + ++ + V LV Sbjct: 279 RASRLPAMLTIPVMLFIMPTVFLLV 303 >gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108] gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108] Length = 327 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 5 IKKRTAKFLD--DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++ KF++ + + S++ V D+V + ++ E + G Sbjct: 141 MHRKKYKFVEIDRISIYMKTLSNSLQILGNVVDSVEEVKPLVHSSIKEELNKATIKLQQG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S++ES + + P QE+ FF ++ V + GG EAL +++ +RK + ++ A Sbjct: 201 KSVNESFMSLDKKYPYQELKFFHEMLDVADKNGGRNIEALESIAVDFEERKVKQMRLYAE 260 Query: 123 SMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++ + SA + ++PF V P +L++ P G ++ A +L + Sbjct: 261 TIQGTKAFRNSALTVLAIPFIFKFFV----PDAYGMLMSTPLGSIVFVSIACVVLYCYIR 316 Query: 179 MRLMINFD 186 ++ + ++D Sbjct: 317 IQKLADWD 324 >gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 283 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + + + P+A+D++V V +GL + + + S + E+ Sbjct: 122 LDWWVNQVLMQISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSISPALSREWLLTAT 181 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S +++ + + + L +++ T ++ Q G L++AL ++ R ++ Sbjct: 182 EISVLDSPQTALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKLIASDSRQYYFLEL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + AK S ++ + V ++ +P +N++ Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVAII--IAPIMLNLMQT 279 >gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein [Thermococcus sibiricus MM 739] Length = 353 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 74/182 (40%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R + P L + + AG+ +++A+ + P+ EF +I H Sbjct: 166 LRFAWRGRVVEVEKALPYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMH 225 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++++R M + VS I ++ GGNL++ L L+ MK Sbjct: 226 GGTSFEDALTRFEERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEY 285 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + A ++ ++ +V + M+ + P + + + AF I MV+ Sbjct: 286 IQKVNGIAFVYMFITIIMPTLFVVAILAASMMSRTVVMPPSALAVILLFAFPAISSMVVF 345 Query: 181 LM 182 ++ Sbjct: 346 MI 347 >gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens] gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens] Length = 200 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + + KR + L+ IV V AG V A+ Q P+ E R+I Sbjct: 43 LHTKVDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMI 102 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 + G S +S + +QEVS F+T + + + GG + + AL +LSR L +++ Sbjct: 103 DDLEGGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKA 162 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + +K + + + +V +P +M + Sbjct: 163 ITRTRGEQASSKL---VFPMMVIFMIVIVLVGTPAFMMM 198 >gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter smithii ATCC 35061] gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter smithii ATCC 35061] Length = 306 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 62/151 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G + Sbjct: 88 QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ M + + +E+ T+I + G +++ + ++S LRD +K + ++ M Sbjct: 148 FDDAWMAMAQRLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A I + + + +M Sbjct: 208 MAVMFLIISAVIASPFALGMVSVYSQFMQSF 238 >gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] Length = 223 Score = 78.6 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 67 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 126 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ Sbjct: 127 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 186 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +++ +K + + +V +P M + Sbjct: 187 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 222 >gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 270 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 3/175 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +P+ LD +V S+RAGL VS ++A++ + + +R F R + ++ + Sbjct: 84 DAWPDVLDDVVASLRAGLSVSQSLAMVGERGPELMREPFSRCATMIRAQGRMGPALDELK 143 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + +LGG +L+ LA L+ ++R+ + ++ A + Sbjct: 144 AEFADPMADRVLEAMRLSHELGGRDLATMLARLAAVIREDNRARGELLARQSWT-VNGAR 202 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + ++ T PG + + P G +L + + M + V Sbjct: 203 MAAAAPWALLGLFSTRPGTVEA-FSSPAGIAVLCGGVIVTALAYVAMIKLGQLTV 256 >gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 280 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 71/157 (45%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ K +K P LD++ V+ G+ + ++ + + ++ + + +R + Sbjct: 123 LQMRRKMLISKTSAQLPYLLDMMSVCVQTGMTIEASLVYLGKELAEFDSDLCYQIKRTSD 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + ++++ + +P + F I Q G ++++ L++L+ +R + + Sbjct: 183 SAKI-HGVEKALNDLTERIPTPAIRSFVLTIIQNLQYGTSVAQTLSDLAEDMRKVQILTV 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK S +I + F + L+ +P M + Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPSIMQM 276 >gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 312 Score = 78.2 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 62/150 (41%), Gaps = 2/150 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + L + P +++ SV AG + A+ + + E +RV+ G S Sbjct: 160 VRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRGELADELQRVLAETRAGSS 219 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + L +S F+ ++V + G L++ L + +R+ + ++ Sbjct: 220 LVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRAQAGDIRE--ASRRELIESGA 277 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + T+ + PG + + Sbjct: 278 RREVAMMVPVVFLVLPVTIAFAFYPGAVGI 307 >gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 707 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 8/173 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R P+ LD + AGL V ++ + P+ E R + G Sbjct: 479 LRKRRIRAIERSMPDFLDRLASVNEAGLTVVQSLRRVSASDLGPLGDEVERAVRDIDWGA 538 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ RM R VS T+I+ G+L+ L + +D + + + Sbjct: 539 DAQTALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRLARE----- 593 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + L +S LV+ + V G + + G+ Sbjct: 594 ---RNQEMLTYLLVIYISFLVFLGIIAALTVSFIPAVEQASAGGVGSGEVAGV 643 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 8/183 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + + R+++ P + + R+G+P + + + E V+ Sbjct: 161 LTERARTRSSEIEATLPRTVAFVFALSRSGMPFPQVLETLARNEAIYGEAAREVSIVVRD 220 Query: 59 Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S+ M P + F+ ++ G NLS L ++ + Sbjct: 221 MDAFGTDVLSSLQTMATRTPSPSLEEFAENLASVLGSGRNLSSFLQEQYERFQEEAEAQQ 280 Query: 118 K--VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + + LS A+ ++ + P T++ + L ++ V G Sbjct: 281 QQYLDLLSTFAEVYVTVLVAGPLFFITVLVVIGLVLADTLT---LIRIVGYVGIPLASFG 337 Query: 176 IMV 178 +V Sbjct: 338 FVV 340 >gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 312 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + L+K K D P+ +D++ + GL + A+ + + + +EF V+ Sbjct: 147 LYRLVKSYRTKLQDALPDTVDLLGIVLGTGLGLDQAMMRVSEEMQFIYPELANEFATVVM 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +S ++ VR ++++ S +I + G +L++AL + D + Sbjct: 207 QVRAGQDRGKSFNQFVRRTGIEDIKSLSAMIIQSEKFGTSLAQALKVYA----DALRTRR 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS--PGYMNVL 155 +++A + KA ++ + + +++ + PG ++V+ Sbjct: 263 RLRAEAAVGKAGIKMLFPIVVFILPVLFVITLVPGMLSVM 302 >gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20] Length = 314 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + KR ++ P+ ++++ +V AG A+ IV + E + Sbjct: 159 LTRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ RM R + V+ I V + G L+E L + + +R+ + + Sbjct: 219 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQAADVRE--AARQDLM 276 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + + T+V+ PG Sbjct: 277 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 308 >gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis str. Marburg] gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str. Marburg] Length = 359 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 73/179 (40%), Gaps = 4/179 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+++ + P AL + +++GL + D++ + + EF R +E G + Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M + + I+ GG+LS+ L ++ + MK K + + + Sbjct: 238 SALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297 Query: 127 -KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 + L + ++ + M ++ P +L+ + ML+G +++ + Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAASTVMGSVL-PPIAIILIYLFLFPMLVGFMAFMIKRL 355 >gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum magnetotacticum MS-1] Length = 319 Score = 78.2 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 + + ++KR FP+ALD+IV V AGL V A+ + + S + E Sbjct: 160 LANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMNSSPEMAEEIGLTAA 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 ++ L +V ST + + G +++AL LS+ R+ + A Sbjct: 220 ELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALKVLSQENRESRMAAA 279 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A ++ AK + +I + ++ Sbjct: 280 EKKAAALPAKLTVPMIVFFLPVLFLMI 306 >gi|332982943|ref|YP_004464384.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700621|gb|AEE97562.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 308 Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 1/173 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R K F A+ + ++ + + + + P+ E +++ Sbjct: 120 LNMIGTSRHNKLNKQFAEAVQDMADRLKLVPNLENGIRETAQITDQPLHGELEKILHKLD 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + ++ R + F+ I Q+ ++++ +S+ R R +V Sbjct: 180 TGIGIIPALKDFARDSESTMIDFWVDSIVFAYQMRASVADVCEEVSQKTRTRLKQNNQVA 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E K+ I + + +VY +SP Y+N + G + L Sbjct: 240 TKLSEIKSMMLSIAGIMIALMFMVYSSSPEYLNS-FDTLWGKIALIYTVISYA 291 >gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 315 Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 6/159 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + S + E R + Sbjct: 159 LTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRLSHGELGRELRLALADAR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ M + ++ F ++V + G L+E L + +R+ K Q Sbjct: 219 AGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEVLRAQAVDVRE----AGKRQ 274 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVLIN 157 L + ++ + F V +++ P +++ N Sbjct: 275 LLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVSLSFN 313 >gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N] gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N] Length = 283 Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + I+ + D P LD++ + AG + +A+ + + + R+ + Sbjct: 127 LGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHCPPGLLTTALRQALNEM 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S E++ M + + V + ++ +LGG L L+ LR+ +A+ Sbjct: 187 RAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRAEE 246 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K ++ + C ++ F Sbjct: 247 AAMRAPVKMLFPLVTCMFPCTFLILAF 273 >gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469] gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469] Length = 204 Score = 77.8 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 3/142 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISR 71 L + P +DI++ + +GL A+ + + S + E T LG + E++++ Sbjct: 61 LREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREEALNQ 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + + + F+TV++ G L+E L + +LRD + + + + K Sbjct: 121 MAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIEKIPIKMLIP 180 Query: 132 IIGSLPFCVSTLVY--FTSPGY 151 + + + + P + Sbjct: 181 LGTLIVPAMLLAILGPLLGPAF 202 >gi|119714630|ref|YP_921595.1| type II secretion system protein [Nocardioides sp. JS614] gi|119535291|gb|ABL79908.1| type II secretion system protein [Nocardioides sp. JS614] Length = 258 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 6/165 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +++ + AG P +A+ RV E +G + ++ + Sbjct: 87 QVLDTCELLAGELTAGRPPGEALQRAAASWPP-----LARVAEAFRVGADVPSALRVLAA 141 Query: 75 YM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +++ + V + G L+ A+ ++ LR + V A+A+A ++ Sbjct: 142 DLEGARDLRVVAAAWQVAHRTGQGLASAVERVAESLRAGAATRRMVTGELGSARATARLV 201 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 LP + L+ P G + L AF L G+ Sbjct: 202 AGLPVLALAMGSGAGGDPWGFLLGHPAGLLCLAGGLAFGLAGLWW 246 >gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing protein [Actinomyces viscosus C505] Length = 284 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 108 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 167 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG +L L +LS++LR+ + +++A A + Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 227 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ + P +LL A +I +M + Sbjct: 228 AAPWLVLALLS-SRPQAAAAYATGAGAVILLIGAVVS-VIAYRLMLRLGRL 276 >gi|333025170|ref|ZP_08453234.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332745022|gb|EGJ75463.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 340 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 +++ L +++ + + + + ++L G L + L L++ R Sbjct: 163 LEALVDRLRARTPLPDALQSLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 222 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +M+ +V A + S I+ ++ + + +++ N P G ++L Sbjct: 223 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 281 Query: 171 FMLIGIMVMRLMINFD 186 +G +R + + Sbjct: 282 LFALGFWWLRKLSTIE 297 >gi|302559126|ref|ZP_07311468.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476744|gb|EFL39837.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 319 Score = 77.8 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ ++ +R +++ L E++ ++ Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQQLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L + L L++ R+ +M+ +V A + S I Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ + + ++ G ++L +G +R + + Sbjct: 227 VVAVSIAFVLGLSVFNRDFVEP-YGTAVGQLVLACVCGLFALGFWWLRKLSTIE 279 >gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20] Length = 283 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKTR 166 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG +L L +LS++LR+ + +++A A + Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226 Query: 135 SLPFCVSTLV 144 + P+ V L+ Sbjct: 227 AAPWLVLALL 236 >gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 279 Score = 77.4 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R LD P +D+I V+AG+ V +V I +S+D ++ ++ Sbjct: 120 LNPAINTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVK 179 Query: 61 LGL--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L E + + R M + E+ F + G +L E L LS+ +RD + + ++ Sbjct: 180 RAEVSGLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSE 239 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S +I + F ++ L+ +PG + ++ Sbjct: 240 EKIGKLSAKMSVPLILFIMFPITILI--AAPGILRIM 274 >gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 328 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K +K R +P+ALD+ + V +G+ + A + + S P+ E Sbjct: 169 VKQKMKARQLSISQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTA 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +V L+ V + + G LS AL LS+ RD + A Sbjct: 229 ELSFLQERKHAYDNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMA 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + K + ++ + ++ P + + Sbjct: 289 EKKAAGLGPKLTVPMMICFLPVLFCVI--LGPAVIRTM 324 >gi|302521143|ref|ZP_07273485.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430038|gb|EFL01854.1| integral membrane protein [Streptomyces sp. SPB78] Length = 351 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 +++ L +++ + + + + ++L G L + L L++ R Sbjct: 174 LEALVDRLRARTPLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 233 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +M+ +V A + S I+ ++ + + +++ N P G ++L Sbjct: 234 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 292 Query: 171 FMLIGIMVMRLMINFD 186 +G +R + + Sbjct: 293 LFALGFWWLRKLSTIE 308 >gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116] gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116] Length = 187 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 73/161 (45%), Gaps = 6/161 (3%) Query: 5 IKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++KR K + P LDI+ V+ + + + A + + + ++ +T G Sbjct: 27 MRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQINKTSEAG 86 Query: 63 L--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +++ + +P E++ F I G +++ L++L+ +R K ++ + + Sbjct: 87 KVHGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIKLLEIEEK 146 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + AK S +I + F + +++ +PG++ + RG Sbjct: 147 MGKLSAKMSVPLILLIMFPI--VIFILAPGFLQIDFTSFRG 185 >gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1] gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1] Length = 323 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58 + + + K ++F L I + GL A+ G +S + E V + Sbjct: 133 LMNKMDKTRKALKEEFMEKLRDIGAHLSVGLNFITAINESLNSGNTSIVMARELSSVKDD 192 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + G S SE+ +M + + E+ F+ V + + GGN + + + ++ + + Sbjct: 193 IYSGKSYSETFMKMYERLQISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQE 252 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + +P P + + G +L + + + GI++ Sbjct: 253 NEVYEAAMRTEQKFVIGIPSICIVAFGVFMPEIIRGFYSSFFGQVLGIILFSIIYGGILL 312 Query: 179 MRLMINFD 186 M + F Sbjct: 313 MSRFVRFR 320 >gi|318062247|ref|ZP_07980968.1| integral membrane protein [Streptomyces sp. SA3_actG] gi|318080605|ref|ZP_07987937.1| integral membrane protein [Streptomyces sp. SA3_actF] Length = 351 Score = 77.4 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 +++ L +++ + + + + ++L G L + L L++ R Sbjct: 174 LEALVDRLRARTPLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 233 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +M+ +V A + S I+ ++ + + +++ N P G ++L Sbjct: 234 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 292 Query: 171 FMLIGIMVMRLMINFD 186 +G +R + + Sbjct: 293 LFALGFWWLRKLSTIE 308 >gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii DSM 2375] gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii DSM 2375] Length = 306 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 62/151 (41%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G + Sbjct: 88 QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ M + + +E+ T+I + G +++ + ++S LRD +K + ++ M Sbjct: 148 FDDAWMAMAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A I + + + +M Sbjct: 208 MAVMFLIISAVVASPFALGMVSVYSQFMQSF 238 >gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 9/148 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P ALD+ + +G P+ A++ + + + FRR + LG +L+E+++ Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALTEFD-- 136 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L + I + G L+++L L++ LR + ALS +A W++ Sbjct: 137 -SLADGHRLVQTIGRSADTGARLADSLHLLAKELR----FDREQAALSHAHRAGVWMV-- 189 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHM 163 LP C+ L F + G + V+I+ G + Sbjct: 190 LPLCLCFLPAFIAAGLLPVVISSLDGIL 217 >gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 291 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLG 62 KK T K P LD++ V G+ + + + + ++ +E L Sbjct: 139 KKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSKL- 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++++ +P E F ++ + G ++ LA L+ +R+ M + + Sbjct: 198 VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIG 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M AK S +I + + L+ +PG M + Sbjct: 258 KMGAKMSIPLIAFIMVPIIILI--AAPGIMRMF 288 >gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 284 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 59/145 (40%), Gaps = 3/145 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQ 59 +K + P+ALD++V V +G + + + S + E+ + Sbjct: 125 WRVKAVIHDIAKNIPDALDLMVVCVSSGQSLETTFNTVGEEMKTISQSLSREWLQTANEI 184 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + S +++ + + L EV+ ++ + G ++EAL ++ R + ++ + Sbjct: 185 AVLDSPQKALFNLDERLKLPEVNNMIVTMAQALKFGTPMAEALKLIASDNRQYQMLELEE 244 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 + AK S ++ + V ++ Sbjct: 245 WVGKIPAKMSFPLVVFIMMPVVVII 269 >gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 315 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 4/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + +R + P LDI++ ++ AG+ V + + +++ RR I Sbjct: 143 LGVYADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRRTAPVTGKVLRRHIA 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN-MK 116 G+ ++ R+ + + L E + I GG LS L S L D++ M Sbjct: 203 DIDAGMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLRRFSVDLSDKRMGMA 262 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTL 143 + I+ +P + L Sbjct: 263 REQVGRKAPQLTLVMILFFMPVLLIVL 289 >gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 310 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 2/150 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I +R + + +FP +++ SV AG ++ I S + EF ++ Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + + +S F ++V + G L++ L ++ +RD K ++ Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDN--AKRELL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++ + + + T+V+ PG Sbjct: 273 EVAGKKEIAMLAPVVFLILPLTVVFAIFPG 302 >gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 291 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLG 62 KK T K P LD++ V G+ + + + + ++ +E L Sbjct: 139 KKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSKL- 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++++ +P E F ++ + G ++ LA L+ +R+ M + + Sbjct: 198 VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIG 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M AK S +I + + L+ +PG M + Sbjct: 258 KMGAKMSIPLIAFIMVPIIILI--AAPGIMRMF 288 >gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 310 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 2/150 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I +R + + +FP +++ SV AG ++ I S + EF ++ Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + + +S F ++V + G L++ L ++ +RD K ++ Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDN--AKRELL 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++ + + + T+V+ PG Sbjct: 273 EVAGKKEIAMLAPVVFLILPLTVVFAIFPG 302 >gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Grimontia hollisae CIP 101886] Length = 288 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 74/159 (46%), Gaps = 9/159 (5%) Query: 3 HLIKKRT---AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVI 56 +L +R K P LDI+ V+ G+ + ++ + + + + +R+ Sbjct: 132 YLEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAFDKDIAYVLKRLR 191 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + L +++ + ++P E+ F ++ Q G ++ EAL+ L++ +R+ + + Sbjct: 192 DRAQT-KGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSILAKDIREIQLLS 250 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A + +K S +I + + L+ T+PG M +L Sbjct: 251 LEEKAGKLSSKMSVPLILFIMMPIVILI--TAPGIMRML 287 >gi|295837159|ref|ZP_06824092.1| integral membrane protein [Streptomyces sp. SPB74] gi|197699511|gb|EDY46444.1| integral membrane protein [Streptomyces sp. SPB74] Length = 291 Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 +++ L +++ + + + + ++L G L + L L++ R Sbjct: 114 LEALVDRLRARTPLPDALQLLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 173 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + +M+ +V A + S I+ ++ + + +++ N P G ++L Sbjct: 174 EEVDMRQRVMAQRASTRRSVQIVVAVSVLFVLGLAVFNKDFVSP-YNSPVGQVVLAGVCG 232 Query: 171 FMLIGIMVMRLMINFD 186 +G +R + + Sbjct: 233 LFALGFWWLRKLSTIE 248 >gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 264 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 P+ALD++V AG ++ V + + + P+ E + L ++ +++ Sbjct: 120 LPDALDLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHF 179 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + L +T ++ + G +++AL L+R R + + + +A + K + + Sbjct: 180 ATRVDLPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPM 239 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + V + P + +L Sbjct: 240 MLFILPTVCLI--AAGPAAIRLL 260 >gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084] Length = 213 Score = 76.7 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 55/134 (41%), Gaps = 1/134 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLSESISR 71 L + P LD++ + AGL ++ + + SEF + + +G + +++ Sbjct: 69 LSELPTMLDVVNLGLSAGLSFDASLELYCDNYETELSSEFGGALLSWRVGAVGRGDALLG 128 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + L + FST + + G L+E L S ++R+ + + + + + + Sbjct: 129 LAERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQVEEEIEKVPVRMLIP 188 Query: 132 IIGSLPFCVSTLVY 145 + + + + Sbjct: 189 LGTLIVPAMLVAIL 202 >gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio coralliilyticus ATCC BAA-450] Length = 284 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 ++ + + + P+ALD++V V +GL + + V+ + S + E+ Sbjct: 123 LEWRVNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTAT 182 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S +++ + + + L +++ +S Q G LS+AL+ ++ R + + Sbjct: 183 EMSVLDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDL 242 Query: 118 KVQALSMEAKASAWIIGSLPF 138 + + AK S ++ + Sbjct: 243 EEWVGKIPAKMSFPLVVFIML 263 >gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021] gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021] Length = 295 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 2/157 (1%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 + A+ + ++ +R R +++ H + L +++ + + + Sbjct: 123 AGLEQAIPSSIRAAAPMLRPHLRALVDRLHTRMPLPDALRLFADELDDPSADLVVAALIL 182 Query: 91 QSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 S+L G L + L L+ R+ +M+ +V+A + S I+ + + +P Sbjct: 183 NSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQIVVGTAVAFAVALVVFNP 242 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 Y+ ++ G +L V A F G MR + +FD Sbjct: 243 SYVEE-YDNTLGQAVLVVVAGFFGAGFAWMRRLAHFD 278 >gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1] gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus NA1] Length = 355 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 72/181 (39%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL + + AG+ +S+A+ + + EF ++ Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++++ M + VS I + GGNLSE L ++ MK Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYV 288 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + A ++ ++ +V + M + P + + + AF + +++ + Sbjct: 289 QRVNGIAFIYMFITIVMPTMFVVGILAGSVMAQSLIMPPETLAVILLFAFPALSFIIVNM 348 Query: 182 M 182 + Sbjct: 349 I 349 >gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 272 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 5/170 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 A D + + AG P DA+ V +E R LG + + Sbjct: 104 RAQVIEACDTLAAELAAGRPPHDALEGAAE-----VCAELRPAAAAARLGGDVPAVLQLA 158 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + V + G ++ + L+ LR ++++ ++ A+ +A + Sbjct: 159 ADTPGAESLKALAAAWQVADRSGAAVAAIVDRLAASLRAEESLRRQIATNLAGARTTARL 218 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + LP + L Y + L G L A + G+ + Sbjct: 219 LAILPLFGTLLGYALGADPLTFLTTTIPGAACLTAGLALAITGLWWTERL 268 >gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665] Length = 313 Score = 76.3 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAAL 226 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + L V F + + G L++ L ++ +R+ + + + + Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREM----GRRELMEAAGRKE 282 Query: 130 AWIIGSLPFCVSTL--VYFTSPG 150 ++ L F + L ++ PG Sbjct: 283 IQMMVPLVFGILPLTVIFAVFPG 305 >gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC 17982] gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC 17982] Length = 298 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R P+ +++ +V AG + A+ + G + P+ E Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGVELSLTAGHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 E ++ LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288 >gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 313 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +++R L +FP +++ +V AG + A+A + S + E + Sbjct: 157 LTQQVQRREELLLTEFPVVAELLALAVTAGESPTAAIARVTRLSGGELARELGAALGRAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L++++ ++ L ++ F + V + G L+E L + +R+ K ++ Sbjct: 217 AGVPLADALQQVADRTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVREAG--KRRLL 274 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + T+++ PG ++++ Sbjct: 275 EAGGRKEIAMMVPVVFLVLPVTVLFALYPGLISIV 309 >gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758] gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758] Length = 141 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54 ++ +K F F +AL + + G + +A+ + + EF Sbjct: 2 IRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFTY 61 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ +L ++ + + L EV F TV S+ + GG+ + N R L D+ Sbjct: 62 MVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKAE 121 Query: 115 MKAKVQALSMEAKA 128 +K ++ + K Sbjct: 122 VKREIDTVIAAKKW 135 >gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191] gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191] Length = 296 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + I+KR L +F +D+ + +GL A I+ + + + E +++ Sbjct: 135 VNSKIQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNE 194 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG S E++ R+ +QE+ F +I +LG +L + L N S LR R+ KA+ Sbjct: 195 VKLGYSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254 Query: 119 VQALSMEAKASA-WIIGSLPFCVSTLV 144 A K + P ++ Sbjct: 255 KLAAQASTKMLVPLFLFIFPTVFILIL 281 >gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758] Length = 303 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 8/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + H K R + P AL+++ SV AG+ V + + P+ EF R Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202 Query: 60 -HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 HLG+S +++ M R + +F + ++ G ++S L + +++ R KA+ Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLAR-----KAR 257 Query: 119 VQALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 AL+ + K S + L F + ++ P + Sbjct: 258 YDALTAQINKLSTKMAVPLVFFLIAVLVLILPPLIIP 294 >gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309] gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309] Length = 298 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R P+ +++ +V AG + A+ + G + P+ +E Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGAELSLTAGHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 E ++ LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288 >gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681] gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 290 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56 + ++KR + L + P L ++ V AG V A+ V + P+ E R+ + Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 G S ++ + + +QE++ F+T + + + GG + AL LS+ L ++ Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + S+ ++ + + T++ + ++ Sbjct: 253 ISRTRGEQA----SSKLVFPMALILLTVIVLVGAPALMMM 288 >gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633] gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466] gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034] gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037] gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030] gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329] Length = 288 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72 P LD++ V G+ + ++ + + + + ++ E + + L +++ Sbjct: 148 LPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEF 206 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +P E F ++ + G ++ LA+L+ +R+ ++ + + M AK S + Sbjct: 207 YDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPM 266 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 I + + L+ +PG M +L Sbjct: 267 IAFIMIPIVVLI--AAPGIMRML 287 >gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3] gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3] Length = 296 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+ +D + +VRAG+ + + +A + + +R F R E S S + R+ Sbjct: 107 ELWPDVVDNLSSAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSATGSFSACLDRLA 166 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++GG +L L LS LR+ +A+++ +A + Sbjct: 167 DELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARL 226 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V L+ + P G ++L V A + ++M+ + Sbjct: 227 ALAAPWIVLLLLATRGQN--VRAYDSPTGVLVLVVGGAVSALAYLLMKRIGRL 277 >gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein [Methanobrevibacter smithii DSM 2374] gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein [Methanobrevibacter smithii DSM 2374] Length = 306 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 61/151 (40%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR A+ P+ L + ++ GL +A+ + P+ E RR I +G + Sbjct: 88 QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + + +E+ T+I + G +++ + ++S LRD +K + ++ M Sbjct: 148 FDDAWMATAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A I + + + +M Sbjct: 208 MAVMFLIISAVIASPFALGMVSVYSQFMQSF 238 >gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810] Length = 288 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72 P LD++ V G+ + ++ + + + + ++ E + + L +++ Sbjct: 148 LPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEF 206 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +P E F ++ + G ++ LA+L+ +R+ ++ + + M AK S + Sbjct: 207 YDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPM 266 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 I + + L+ +PG M +L Sbjct: 267 IAFIMIPIVVLI--AAPGIMRML 287 >gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 314 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 290 MLFILPTVGLI 300 >gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 283 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P A+D +V VRAG+ + +A+ + + + VR +FR S+ R+ Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEVVRPQFRAFASDYAATARFDSSLDRLKAR 166 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + ++GG +L L +LS++LR+ + +++A A + Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226 Query: 135 SLPFCVSTLVY 145 + P+ V L+ Sbjct: 227 AAPWLVLALLS 237 >gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 293 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 66/160 (41%), Gaps = 5/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57 +K + +++ P+ALD++V V +GL + + + S + E+ Sbjct: 132 VKFRARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEA 191 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L S +++ + + E+ +S + G +++++ ++ R + + Sbjct: 192 ELRLLDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLAL 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + AK S ++ + V L+ +P + ++ + Sbjct: 252 EEKVGKIPAKMSMPLVVLVMIPVVVLI--VAPTIIELMTS 289 >gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272] gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272] Length = 289 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 6/167 (3%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D I +V + A+ ++ + + + + + L ++ R + Sbjct: 112 DTIAGAV----GLEQAIPATAYAAAPSIAPQLTILADRLRVRTPLPVALQRFADDLDDPS 167 Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + ++L G L + L +L+ R+ M+ +V A + S I+ ++ Sbjct: 168 ADLIVAALMLNAKLRGPGLRDVLTSLADSAREELEMRRRVGAGRASTRRSVQIVMAISIA 227 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + Y+ + G ++L V F + G MR + +F+ Sbjct: 228 FVFGLTLFNRDYVEP-FSSALGQVVLLVVMLFFVAGFAWMRRLSDFE 273 >gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 313 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 L +FP+ ++ SV AG + A+ I G + + EFR + G SLS ++ Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAAL 226 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M R + L V F + + G L++ L ++ +R+ + + + + Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREM----GRRELMEAAGRKE 282 Query: 130 AWIIGSLPFCVSTL--VYFTSPG 150 ++ L F + L ++ PG Sbjct: 283 IQMMVPLVFGILPLTVIFAVFPG 305 >gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383] gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383] Length = 314 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ + + + + P+ E + L ++ +++ Sbjct: 170 FPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELTVCADELTLSGDVAATLTHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 AMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQIVALEERAAKLAPKITLPM 289 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + + V + P + +L Sbjct: 290 MLFILPTVCLI--AAGPAAIRLL 310 >gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70] Length = 284 Score = 75.5 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIET 58 ++K + K + D P +D++ +V+ G+ + A+ + + + + R+I Sbjct: 127 NAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 186 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L LS+++ + +P E+ F TV+ G ++ L LS +R+ + + + Sbjct: 187 SEL-TGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIE 245 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 246 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGIMRVF 280 >gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 187 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 9/147 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70 +DFP+ALD++ V AGL + A+ + + V SE ++ G + ++ Sbjct: 33 EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +++V F T++ + G +++E+L LS +L + +++A AK + Sbjct: 93 NLALRTGVEDVESFCTMLIQADRFGTSVAESLRVLSDML----RTRRRMRAEERAAKIAL 148 Query: 131 WIIGSLPFCVSTLVY--FTSPGYMNVL 155 ++ L FCV + P ++V Sbjct: 149 KLLFPLIFCVFPALMGVLLGPALIHVY 175 >gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 358 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A+ + EF ++ G S Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ R M + VS I + GGNL+E L ++ MK + Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVN 290 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153 A ++ ++ +V + + Sbjct: 291 GIAFIYMFMTIVMPTMFIVAILAGSAFS 318 >gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2 [Achromobacter xylosoxidans A8] gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2 [Achromobacter xylosoxidans A8] Length = 290 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ L KR D P D++ V AGL V A+ + +R + Sbjct: 133 LRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQSGPAGILRDALADALAEM 192 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S + +I + ++ ++ LG +L L + R ++++A+ Sbjct: 193 RAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPVLRAQAAQSRSDRHVRAEQ 252 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +IG + C ++ F Sbjct: 253 LAMQAPVKMLLPLIGCIFPCTFIVLAF 279 >gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325] Length = 285 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIET 58 ++K + K + D P +D++ +V+ G+ + A+ + + + + R+I Sbjct: 128 NSILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + LS ++ + +P EV F +V+ G ++ L LS +R+ + + + Sbjct: 188 SEI-TGLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIE 246 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ AK S +I + F + L+ +PG M V Sbjct: 247 EKLGTLAAKMSIPLILFIMFPIIILI--LAPGIMRVF 281 >gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM 10507] gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM 10507] Length = 337 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58 KKR + + D+P + ++AG+ V A I P E RR Sbjct: 181 RKKREEELIMDYPGLVTKFTLLIQAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRTCIE 240 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G+S E+ + + FST++ + G NL + L S + + +A Sbjct: 241 MDSGVSQKEAYQNFGQRCAQAKYKTFSTLLVQNLRSGNRNLVDMLERESTEAWEERKRRA 300 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + K +I L ++ L+ Sbjct: 301 RIHGETAATKLLVPMILMLGVVLALLMI 328 >gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 255 Score = 75.1 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 111 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 170 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 171 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 230 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 231 MLFILPTVGLI 241 >gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 314 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 290 MLFILPTVGLI 300 >gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str. MC2 155] gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium smegmatis str. MC2 155] Length = 210 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ALD++V +R G DA G+S PV R V LG ++ + + R L Sbjct: 40 ALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARLGADVAAGLDDVARASQL 99 Query: 79 Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L + + +R+ A+V+A + +A ++ LP Sbjct: 100 PGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVRAAMAGPRTTALVLAGLP 159 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + L+ G LL + G++ + Sbjct: 160 LAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLLWSDRIT 205 >gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 288 Score = 75.1 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 6/151 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65 P LD++ V G+ + ++ + + + R +E L + L Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P E F + Q G ++ L L+ +R+ M + + M Sbjct: 200 EKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLEERIGKMG 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK S +I + + L+ +PG M L+ Sbjct: 260 AKMSIPLIAFIMVPIIILI--AAPGIMRALM 288 >gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM 14684] gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM 14684] Length = 275 Score = 74.7 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + + P+ LD++ ++ AGLP+ AV + +++ + E+R V LG+ ++ Sbjct: 132 EMEAELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALV 191 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + P V + ++ G L EALA +R R + + QA K Sbjct: 192 ALAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKIQ 250 >gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 189 Score = 74.7 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR A+ D P A+D++ +RAG P A+A + P+ V LG Sbjct: 35 VRKRNARISADLPLAVDLLAACLRAGRPPQAAIATVGHALDGPLAGLLAEVERRLDLGAD 94 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ S + + F+ + G L++ L + S LR + A+ Q ++ Sbjct: 95 AIDAWSVLRAE---PTCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRAV 151 Query: 125 EAKASAWI-IGSLP-FCVSTLVYFTSPGYMNVLIN 157 E ++ + + LP F + +V + + ++L Sbjct: 152 ETRSVLPLGLCFLPAFVLLGVVPTIAATFTDILTE 186 >gi|256397304|ref|YP_003118868.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363530|gb|ACU77027.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 303 Score = 74.7 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 6/174 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL S+R AG + A+ +S +R +++ + L +++ Sbjct: 105 EALAGWTESLRDTIAGAVGLEQAIPATARAASPAIRENLHTLVDRLRARMPLPQALEYFA 164 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 M + + ++L G L E L L++ R+ +M+ +V A + S I Sbjct: 165 DDMDDASADLVIAALILNARLRGPGLREVLGALAQSSREEVDMRQRVMAQRSSTRRSVQI 224 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V + + ++ + G ++L G +R + + + Sbjct: 225 VVGVSVAVVLGLAVFNKSFVQP-YSTATGQLVLLGVIGLFAAGFFWLRKLSSIE 277 >gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 311 Score = 74.7 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 67/151 (44%), Gaps = 2/151 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H I++R+ + + +FP +++ +V AG P + A+ + S+ + E V+ Sbjct: 156 LTHTIRRRSERIILEFPTIAELLALAVAAGEPPATALDRVSRTSNGELSHELAIVMNEVR 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+++++R + L ++ F+ ++V + G L+ L ++ RD + Sbjct: 216 SGEPLTDALTRFGDRVDLPLITRFAEGVTVAIERGTPLAAVLRAQAQEARDAG--HRTLM 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + + + + ++V+ P + Sbjct: 274 EVGGQREILMMVPVVFIILPISIVFAVFPSF 304 >gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 300 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 74/157 (47%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ L +R + L ++V +GL + ++ ++V Q+SD + E RV+ Sbjct: 138 LRWLAARRRKMISKEITTFLYMLVMLFDSGLSLEHSLRIMVEQASDIMPHLAQELERVLA 197 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ M + + + E+S ++ +Q GGN+ +++ + ++ +R+ Sbjct: 198 RIRAGQDQGKALMSMSQMLDIPELSEAVAMLKQVAQQGGNVRDSIMRYAALIEERQFSHL 257 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + AK + ++ + + +++ PG++ + Sbjct: 258 RERVSKLSAKMTIVMMIFM--FPALMIFIAGPGFIGL 292 >gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 284 Score = 74.7 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 3/139 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65 + + P+ALD++V V +G + + + S + E+ + S Sbjct: 131 RQEIAKNIPDALDLMVVCVSSGQSLEATFNTVGQEMKSISPSLSREWLVTATEMAVLDSP 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L EV+ +S + G +++AL ++ R ++ + + Sbjct: 191 QVALTNLDTRLALPEVNNMIVTMSQALKFGTPMADALKLIASDNRQYHMLELEEWVGKIP 250 Query: 126 AKASAWIIGSLPFCVSTLV 144 AK S ++ + V ++ Sbjct: 251 AKMSFPLVVLIMLPVVVII 269 >gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 338 Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + + + +E R + H Sbjct: 182 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTHGELGTELRLALADAH 241 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++ + L ++ F ++V + G L++ L + +R+ K Q Sbjct: 242 AGASLVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQAVDVRE----AGKRQ 297 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F + +++ P ++ Sbjct: 298 LLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSF 333 >gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512] Length = 314 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64 + ++ FP+ +D+++ + AG+ + A + + ++ G Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRR 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+++ + + + E S + +LG ++++ L S+ +RD + ++A+ +A ++ Sbjct: 216 LREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSKEMRDIRVVRAEEKANAL 275 Query: 125 EAKASAWIIGSLPFCVSTL 143 K LP Sbjct: 276 PVKM------LLPLGAFLF 288 >gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234] Length = 313 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 60/142 (42%), Gaps = 3/142 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64 + ++ FP+ +D+++ + AG+ + A + + ++ G Sbjct: 155 KEREYRRLFPDFMDMLIVCLDAGMSLEAAANRVAREFVSKRKDFGLHLSIMMLEVRGGRR 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+++ + + + E + + +LG ++++ L S+ +RD + ++A+ +A S+ Sbjct: 215 LREALANLATRLRIDEARSLAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANSL 274 Query: 125 EAKASAWIIGSLPFCVSTLVYF 146 K + L +V Sbjct: 275 PIKMLLPLGAFLFPVSLVIVLV 296 >gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700] gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700] Length = 288 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 130 VNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVMLRIIR 189 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + Sbjct: 190 KSEI-TGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQLLTI 248 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ AK S +I + F + L+ +PG M V Sbjct: 249 EEKLGTLAAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822] gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis] Length = 298 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 1/133 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + P LD++ AGL + A+ P+R + + G+ +++ + Sbjct: 155 ELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALA 214 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 V + ++ G +L L L+ R ++ +A+ A+ K +I Sbjct: 215 ARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLI 274 Query: 134 GSLPFCVSTLVYF 146 + C ++ F Sbjct: 275 ACIFPCTFIVLAF 287 >gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 361 Score = 74.3 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 5/154 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60 +KR + + + LD++ + G+P+S ++ + + + E + Sbjct: 155 FRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNLTNYPALADELLIMKRQAE 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + SL +++ + EV ++++S QLG ++S L + + R + A +Q Sbjct: 215 V-SSLKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRTARRQMATMQ 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A + ++ F + L+ SP +M + Sbjct: 274 ANRTPVFLTFPLMFC--FAPAVLILLMSPSFMQL 305 >gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 296 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 2/157 (1%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + A + ++ + P+R+E + G L E++ + Sbjct: 117 LGAAAGLEQSILAAAANAPAPIRAEVAELAANLKAGTRLDEALRTFAADLGDATGDLVVA 176 Query: 87 VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + S+ NL E L L+R R++ ++ A ++S II + F V+ ++ Sbjct: 177 ALVLASRQQARNLGEVLGELARYAREQAAQSMRITADRARTRSSVRIIVAFVFAVAGVLV 236 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 YM + P G ++L V A + M + + Sbjct: 237 GMDGSYMTP-YSSPAGQIVLAVVAGVFGVAFMWLHKI 272 >gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50] gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 298 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 1/133 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73 + P LD++ AGL + A+ P+R + + G+ +++ + Sbjct: 155 ELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALA 214 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 V + ++ G +L L L+ R ++ +A+ A+ K +I Sbjct: 215 ARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLI 274 Query: 134 GSLPFCVSTLVYF 146 + C ++ F Sbjct: 275 ACIFPCTFIVLAF 287 >gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3] gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus gammatolerans EJ3] Length = 358 Score = 74.3 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 57/152 (37%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + ++R A+ P L I + AG+ +++A+ + EF ++ Sbjct: 167 RMVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S E++ R M + VS I + GGNL+E L ++ MK Sbjct: 227 GASFEEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYV 286 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 + A ++ ++ +V + + Sbjct: 287 QKVNGIAFIYMFMTIVMPTMFIVAILAGSAFS 318 >gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 324 Score = 74.0 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + R + D+ P +D++ GL + ++ VI + + EF R + Sbjct: 161 LARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQ 220 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ R+ R +++ T+++ + GG + E L L++ + + Sbjct: 221 QFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRL 280 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K + + K + ++ ++ L+ PG+M+V Sbjct: 281 KERVGKLTVKMTVVMV------LTLLIITAGPGFMSV 311 >gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 288 Score = 74.0 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 6/151 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65 P LD++ V G+ + ++ + + + R +E L + L Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P E F + Q G ++ LA L+ +R+ M + + M Sbjct: 200 EKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMG 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK S +I + + L+ +PG + +L+ Sbjct: 260 AKMSIPLIAFIMVPIVVLI--AAPGILRMLM 288 >gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 328 Score = 74.0 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 64/159 (40%), Gaps = 4/159 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +++ KR A +P+ALD+++ V +G + + + + + E Sbjct: 170 LRNAATKRQASIQRAWPDALDLLLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + ++ L+ V T ++ + G + AL +++ RD + A Sbjct: 230 ELSYLPERRTAYDNLILRTDLEGVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAA 289 Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155 + +A ++ K + I+ LP ++ ++ + ++ + Sbjct: 290 EKKAAALPPKLTVPMIVFFLPVLMAIILAPAAISMIDAM 328 >gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 314 Score = 74.0 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD++V AG ++ V + + P+ E + L ++SE+++ Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 229 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + +T ++ + G +++AL LSR R + + + +A + K + + Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289 Query: 133 IGSLPFCVSTL 143 + + V + Sbjct: 290 MLFILPTVGLI 300 >gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] Length = 161 Score = 74.0 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 49/98 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R A+ L +FP+ +++ +VRAG + A+ + S + EF R++ G+ Sbjct: 3 ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 L+E+++ R + + F+ ++V + G L+ Sbjct: 63 LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGVF 100 >gi|157283960|ref|YP_001468228.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151363102|gb|ABS06104.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 348 Score = 74.0 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 72/182 (39%), Gaps = 2/182 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R + L+ + ++ + ++ G + +A+ ++ + +++ SL Sbjct: 93 QARQIRKLEALASWVESLRDTISTGQALPEALPASALTAAPEIAEPLANLLDRMRARQSL 152 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + + E +++ +++ G L+ L +L+ R + ++ +++A Sbjct: 153 DQALLLLADDLDDPEADSVIGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAGRA 212 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + + Y+ + G ++L + G+ +R + + Sbjct: 213 SMRRGVTFVIITTCTLVIGMTVFNRDYVEP-YSTVTGQIVLAIVIGLFTAGLFWLRRLAD 271 Query: 185 FD 186 F+ Sbjct: 272 FE 273 >gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 320 Score = 74.0 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 5/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 K R + FP+ L++IV + AGL A+ + + + E +++ Sbjct: 163 RRKNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMA 222 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + ++M +PL E+ F+ + + G S A+ L R + M + + Sbjct: 223 MTNDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEK 282 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + + +I + V ++ P ++VL Sbjct: 283 AARLPVLMTLPLIFCIMPAVFVVL--VGPAVLSVL 315 >gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 310 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 61/146 (41%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R ++ L + P +++ +V AG + A+ +V + + +E R + Sbjct: 155 LGRQVAQRESRMLQEMPTVAELLALAVGAGEGATGALERVVRSTRGELTAELERTLADAR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L+ ++ + L ++ F+ ++V + G L+E L ++ +R+ Sbjct: 215 AGAPLTAALDGLADRTGLAALARFAEGVAVAVERGTPLAEVLRAQAQDVREEVRRDLMET 274 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 E ++ LP V+ V+ Sbjct: 275 GGRKEVAMMVPVVFLILPVTVAFAVF 300 >gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894] Length = 67 Score = 74.0 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 44/67 (65%), Positives = 55/67 (82%) Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++ +M IGI VMR Sbjct: 1 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 61 NMVNFDI 67 >gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 297 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R + + P+A++++ +V AG + A+ + + + E R++ G + Sbjct: 144 AKQRQMQLNQELPDAIELLALAVGAGESLYMALERVASRCTQVTGEELTRLMAELKQGEA 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS S++ + +S + + G L++ L R A+ Q L+ Sbjct: 204 LSMSLTSWRTRTESEVLSHLVDAVVSALERGSPLAQVLREQVADSRS----AARNQLLAQ 259 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNVLIN 157 K W++ + F + L V+ PG + + + Sbjct: 260 GGKKEVWMMIPVVFLILPLTVVFALYPGLVALQMT 294 >gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f] gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f] Length = 367 Score = 73.6 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 65/156 (41%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R + L +FP +++ +V AG A+ + + + +E R + Sbjct: 211 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRGELGTELRLALADAR 270 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ K Q Sbjct: 271 AGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDVRE----AGKRQ 326 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F + +++ P ++ Sbjct: 327 LLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSF 362 >gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3] Length = 288 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 6/151 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65 P LD++ V G+ + ++ + + + R +E L + L Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSIDSNLAHVVRVTVERSRL-VGL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P E F + Q G ++ LA L+ +R+ M + + M Sbjct: 200 EKALEEFYALVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMG 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK S +I + + L+ +PG + +L+ Sbjct: 260 AKMSIPLIAFIMVPIVVLI--AAPGILRMLM 288 >gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] Length = 699 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 3/164 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R P+ LD + AG+ V ++V + + E R+ Sbjct: 465 VQWAYRRRVKAIEAAVPDMLDRLASLNEAGMTVVESVRRVTNSDLGALNDELERMSRDIE 524 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ R+ + V+ ++++ G++ L + ++ + ++ + Sbjct: 525 WGTDAATALRRVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQ-- 582 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 E K II F ++ S + L + P G+ Sbjct: 583 -REDEMKTYLIIIYLSFFVFLVIIGALSAILVPALQDLPAGNAA 625 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 7/151 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 + R K + R+G+ + + + +E ++ Sbjct: 160 SYRGNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARNRDVYGEAAAEVGVGVKAM 219 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKN 114 L GL + +I +M R P ++ F ++ Q G +L L R + + Sbjct: 220 DLFGLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKAEQE 279 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ ++ E S +++G L ++ Sbjct: 280 AFLELLSVLAEGYVSLFVVGPLLLITILVIM 310 >gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1] gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1] Length = 261 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +ALD++V +R G A+ V ++ + V LG + + R Sbjct: 87 ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146 Query: 75 YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G ++ + R + +R+ + +V++ A+A+A I+ Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + + L++ G LL V F+ G++ + Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256 >gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 291 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 68/178 (38%), Gaps = 3/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + + + G+ + +A+ + + D +R E ++ +S + Sbjct: 99 RIDKL-EALEEWTRGLAGVLTVGVGLEEALRATLRSTPDAIRPEVTTLVARLRARMSTED 157 Query: 68 SISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + + G L+ L +L+ + + ++A + Sbjct: 158 ALRAFADDLDDATGDLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKP 217 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A+A + + V +++ S Y+ P G +LL + A + ++ MR M Sbjct: 218 RATARWVTIITLGVLGVLFIFSSEYLAP-YRTPAGQLLLALFLAIYVSLLIWMRAMAK 274 >gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168] gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168] Length = 283 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 4/146 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58 K +I R + +D P +DI+ V++G+ + + + + + + R I Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMK 183 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + +SE++ + +P QE+ ++ + + G ++ L +LSR +R+ + + Sbjct: 184 MEV-SGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAID 242 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144 + S+ AK S +I + F + LV Sbjct: 243 EKISSLAAKMSLPMIICIMFPILVLV 268 >gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3] gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3] Length = 288 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 K+ T+ P+ALD++V V +GL + + + + ++ Sbjct: 130 RAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVGQEMYQICPELSRQWLITEVELR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L S ++ + + E+ +S + GG++++ L ++ R ++ + + + Sbjct: 190 LLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSIAQTLRLIATDSRQKQYLSLEEK 249 Query: 121 ALSMEAKAS 129 + AK + Sbjct: 250 VGKIPAKMA 258 >gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon 107 str. F0167] Length = 266 Score = 73.2 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 8/179 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSES 68 +F + L+ + S +G +A A + +E R +I + + + Sbjct: 90 EFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRIIIAGMTNNIIIEDL 149 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + L +V F++ + GG++ + + + +I+ D+ ++ +++ + E + Sbjct: 150 LKDFAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDKIEIEMEIKTMLTEKEN 209 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+ +P + + G M+ N M+ A ++ R ++N + Sbjct: 210 ELNIMMVMPLVIMITLSGM--GTMSAAANTAFSVMVKIFVIALFAGAYIMGRKIVNIRI 266 >gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 314 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64 + ++ FP+ +D+++ + AG+ + A + + ++ G Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKRQDFGLHLSIMMLEVRGGRR 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+++ + + + E S + +LG ++++ L + +RD + ++A+ +A ++ Sbjct: 216 LREALANLAIRLRIDEARALSVLFRQSEELGTSVTQTLRVYCKEMRDIRIVRAEEKANAL 275 Query: 125 EAKASAWIIGSLPFCVSTL 143 K LP Sbjct: 276 PVKM------LLPLGAFLF 288 >gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans] gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M V Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|297193034|ref|ZP_06910432.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719836|gb|EDY63744.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 278 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 1/158 (0%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAGL + A+ VG + D + RV+ G + E++ R + ++ + Sbjct: 117 LRAGLQPAQALLFAVGAT-DVLGDAEARVLAAARFGGDVPEALRSAARQPGAEGLAGVAA 175 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 V G L+ L L LR + + ++ A A ++ ++ LP + + Sbjct: 176 CWRVAVDGGAGLAAGLDRLEASLRAEMDQREELAAQLAGAWSTIVLLALLPVAGLAMGWA 235 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++VL + P G L + G+ ++ Sbjct: 236 LGADPLHVLFHSPAGIACLVIGGLLETAGLCWAGRIVR 273 >gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa SC2] gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa SC2] Length = 292 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 9/160 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + ++KR + L + P L ++ V AG V A+ V + P+ E + + Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 G S ++ + + +QEV+ F+T + + + GG + AL LS+ L ++ Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + S+ ++ + + T++ + ++ Sbjct: 255 ISRTRGEQA----SSKLVFPMALILLTVIVLVGAPALMMM 290 >gi|228943036|ref|ZP_04105537.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955918|ref|ZP_04117855.1| Hypothetical membrane protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976631|ref|ZP_04137074.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783100|gb|EEM31236.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803745|gb|EEM50427.1| Hypothetical membrane protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816621|gb|EEM62745.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 304 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 65/180 (36%), Gaps = 1/180 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61 + KK + L+ + +V ++ A ++ P++ + R + Sbjct: 111 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 170 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ V+ +++ F ++ + S+ G + + L N++ +D+K +AK+++ Sbjct: 171 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDDILLNIAHEFQDKKIYRAKLKS 230 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + + + V +G +L + + Sbjct: 231 GMQPQRKTFKQTAIMLASLPVAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 290 >gi|284045233|ref|YP_003395573.1| type II secretion system F domain protein [Conexibacter woesei DSM 14684] gi|283949454|gb|ADB52198.1| Type II secretion system F domain protein [Conexibacter woesei DSM 14684] Length = 281 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 66/185 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ + P I ++ AG V A+ + +E Sbjct: 95 LHQRRRRYRVELERAAPAVARAIADALGAGHAVPGALVEAARGAEGAAAAELGAAAAALR 154 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + R+ + I +Q + GG+L+ L L+ + + + Sbjct: 155 MGQPTAAVLERLRARADSRPYDTLVAAILLQREAGGDLATLLRELAAAQEESMRLLDDAR 214 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +A+ + ++G +P + L PG + ++ P L G A + ++ +R Sbjct: 215 ATTAQARFTGLVVGVMPIGAAALAELARPGALAMVAQVPLAAWLAGFAFFLQAVALVAIR 274 Query: 181 LMINF 185 + Sbjct: 275 RLARV 279 >gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 288 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M V Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP] Length = 353 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R A+ P L + + AG+ +++A+ + + EF +I G S Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++R M + VS + + GGNLS L L+ M+ + Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVN 290 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A ++ S+ +V + MN + P + + + F + +++ ++ Sbjct: 291 GLAFVYMFISVVMPTMLVVAVLAASIMNKRLIMPIQGLAVVLLFGFPAMAFLMVVMI 347 >gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK] gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK] Length = 261 Score = 72.8 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +ALD++V +R G A+ V ++ + V LG + + R Sbjct: 87 ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146 Query: 75 YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + + G ++ + R + +R+ + +V++ A+A+A I+ Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + + L++ G LL V F+ G++ + Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256 >gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 321 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +V +RAG + A++ ++ + +E V+ G + E++ + ++ Sbjct: 156 VVGELRAGWQPAQALSFAARETGA-LGAEEAAVLAAARFGGDVPEALRKAADQDGADGLA 214 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L L LRD + + +++A A A+ ++ LP Sbjct: 215 GMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRERLRAELAGAWATVAVLAVLPLAGVA 274 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL++ P G L V A G+ ++ Sbjct: 275 LGAALGADPLRVLLHTPAGLGCLVVGGALEAAGLWWAARIVR 316 >gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] Length = 282 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57 K+++ R K D P +D++ V++GL + ++ + D + F R+++ Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGD-INDNFVPFLDRLVK 184 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L ++ + + +P +EVS + + G ++ E L LS +R+ + +K Sbjct: 185 KIEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKT 243 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + AK S ++ F V ++ +PG M V+ Sbjct: 244 EEIIGKLSAKMSIPLVLFFMFPVVIII--AAPGIMRVM 279 >gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42] gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42] Length = 314 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 59/142 (41%), Gaps = 3/142 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64 + ++ FP+ +D+++ + AG+ + A + + ++ G Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRR 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E+++ + + + E S + +LG ++++ L S +RD + ++A+ +A ++ Sbjct: 216 LREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSNEMRDLRVVRAEEKANAL 275 Query: 125 EAKASAWIIGSLPFCVSTLVYF 146 K + L +V Sbjct: 276 PVKMLLPLGAFLFPVSLLIVLV 297 >gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 303 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 67/156 (42%), Gaps = 6/156 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R ++FP D++ +V AG + A+ +V ++ + E RV+ G + Sbjct: 150 VRRREQAMTEEFPAVADLLALAVAAGESPTAALQRVVARAHGELADELGRVLAEVRTGST 209 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ R+ + ++ F+ ++V G + + L + +R+ A+ + Sbjct: 210 IVQAFDRLAARTGVTSIARFAEGLAVAVDRGTPVVDVLHAQTADVRE----AARRHLMET 265 Query: 125 EAKASAWIIGSLPFCVST--LVYFTSPGYMNVLIND 158 + ++ + F + +V+ PG + + + Sbjct: 266 GGRREVLMMVPVVFAILPVTVVFAFYPGLVGLHLTS 301 >gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01] gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01] Length = 290 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 6/147 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68 P LD++ V G+ + ++ + + + + + E + + L ++ Sbjct: 146 ISSRLPFLLDLMNVCVHTGMTLEASLEYLSNELKMVDENLAFVVQTTSERAKV-VGLDKA 204 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 +S +P E F ++ + G ++ LA+L+ +R+ ++ + + M AK Sbjct: 205 LSEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKM 264 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S +I + + L+ +PG M +L Sbjct: 265 SVPMIAFIMIPIVILI--AAPGIMRML 289 >gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 324 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 5/144 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VI + + EF R + G +++ Sbjct: 170 DELPAMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQTLL 229 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ R +++ T+++ + GG + E L L++ + + K + + K + Sbjct: 230 RIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 288 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + L+ PG+M+V Sbjct: 289 -VVMVLTLLPALLIITAGPGFMSV 311 >gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 292 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 6/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58 + +KKR DFP+ L+ + + AG+ V A IV + + + E + Sbjct: 136 LNEKVKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNSVLYEELSIAVAD 195 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G S + + + E++ F +V+ + G L L + + M+ Sbjct: 196 IRAGKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRLQASECWE---MRK 252 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + E ++ + + V+ L+ T P + Sbjct: 253 RAATRLGEEASTKMLFPMMIMFVAILIIVTVPAIFAM 289 >gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 289 Score = 72.4 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KR ++++ + +AGL +A+ I ++ + E +R+ + + Sbjct: 131 IKRKVDKRKDILNATILYYVELLSTACQAGLNTENAIERIADNTNSILADEIKRIWKESY 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + E+I M++ EV F + ++G +++ L + +R +R R K+++ Sbjct: 191 KTKTREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSR--AKSEIV 248 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 AK L S L+ +P + ++ Sbjct: 249 KKGELAKVKIVFPMILFLLPSVLLVALTPALITLM 283 >gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 298 Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R P+ +++ +V AG + A+ + G + P+ SE Sbjct: 143 LSIKARRRQRAIDAAVPDCAELLALAVAAGESIPAAIERVAGCAGGPLGSELALTSAHIR 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ +V ++ S ++ + G L+ L + +R R+R + Sbjct: 203 NGTPSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEE 262 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145 E ++ LP V +Y Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288 >gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 326 Score = 72.0 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 5/146 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G S ++ Sbjct: 170 LDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRSREQT 229 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + K Sbjct: 230 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKM 289 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ L + L+ PG+M+V Sbjct: 290 T--VVMVLTLLPALLIITAGPGFMSV 313 >gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M V Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284 >gi|228968942|ref|ZP_04129890.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790749|gb|EEM38402.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 216 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 9/184 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61 + KK + L+ + +V ++ A ++ P++ + R + Sbjct: 23 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 82 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ V+ +++ F ++ + S+ G + L N++ +D+K +AK+++ Sbjct: 83 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDNILLNIAHEFQDKKIYRAKLKS 142 Query: 122 LSMEAK----ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + +A ++ SLP + V +G +L + Sbjct: 143 GMQPQRRTFKQTAIMLASLPIAALA----INADDYVVFARTLQGRFILLAIIVVCIFSAF 198 Query: 178 VMRL 181 + Sbjct: 199 KIEK 202 >gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans] gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +V+ G+ + A+ + + + R+I Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + ++ +PG M V Sbjct: 252 LGTLSAKMSIPLILFIMFPI--IILTLAPGVMKVF 284 >gi|326331490|ref|ZP_08197780.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325950746|gb|EGD42796.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 238 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 3/177 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L+ + + G+ + A+ + + P+ +E R+ S ++ Sbjct: 51 QIQRLEALEEWTRSLSGVLTVGVGLEQALIATLRSTPAPIVAEVNRLAARLRARWSTEDA 110 Query: 69 ISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + + + G L+ L L+ + + +V+A + + Sbjct: 111 LRAFADELNDATGDLVAANLILGARRRGAGLAAVLEGLAESVAADVRARRQVEADRAKPR 170 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+A + + V ++ + Y++ P G ++L + ++ M+ M N Sbjct: 171 ATARWVTIISAVVIVVLAVSG-TYVDP-YATPLGQVILATLLGAYVGILVWMKRMAN 225 >gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] Length = 284 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 3/139 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65 + P+ALD++V V +G + + + S + E+ + S Sbjct: 131 RQEIAKHIPDALDLMVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTSTEMAVLDSP 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L E++ +S + G ++EAL ++ R ++ + + Sbjct: 191 QVALTNLDARLALPEINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLELEEWVGKIP 250 Query: 126 AKASAWIIGSLPFCVSTLV 144 AK S ++ + V ++ Sbjct: 251 AKMSFPLVVFIMLPVVVII 269 >gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio orientalis CIP 102891] Length = 288 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66 P LD++ V G+ + ++ + + + R ++ L + L Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRL-VGLE 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +P E F + Q G ++ LA L+ +R+ M + + M A Sbjct: 201 KALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGA 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 K S +I + + L+ +PG + +L+ Sbjct: 261 KMSIPLIAFIMVPIVVLI--AAPGILRMLM 288 >gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 329 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G ++ Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 235 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + + Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ +L + L+ PG+M V+ Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320 >gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 348 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 11/159 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIE 57 ++KR + L D+P + V+AG+ V A I ++ P E R V Sbjct: 190 LQKRYEELLMDYPGLIMKFTLLVQAGMTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCY 249 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMK 116 G+S SE+ R + F+T++ Q G +++ L S + + K Sbjct: 250 EMESGVSESEAYRRFGERCGQAKYKTFATLLIQNLQKGSRQMADMLERESTEAWEERKRK 309 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+V + K +I L ++ ++ P +M+ Sbjct: 310 ARVLGEAAATKLLVPMIMMLIVVMAIVMI---PAFMSFY 345 >gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 807 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +R + P L+ + AG+ V +++ + G + E R+ + Sbjct: 465 RELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVRGTDVGALSEEVDRIWADVTM 524 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ ++++R R + +S T++ + G + L + R ++ + + Sbjct: 525 GANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQRR- 583 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 + + ++ + F V ++ Sbjct: 584 ---QEMLTYLVVIYISFLVFLVII 604 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 14/181 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 + R + L + R G+ A+ + + E + Sbjct: 158 RSRAAVRQRAIDEGQGRTLAFLYALSRGGVSFPAALRTLSDNREIYGASAEEVSVAVRQM 217 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L G + ++ M P ++ F+ ++ Q G +LS L +D + + Sbjct: 218 DLFGQDMITAVRGMAGRTPSEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQE 277 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A A++ + + + G L ++G ++ Sbjct: 278 EILEHLATVAEAYVTVLVAAVLFFITILL-----------VFGLTLADTLVFIQMVGYLM 326 Query: 179 M 179 + Sbjct: 327 I 327 >gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans] Length = 288 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +++ G+ + A+ + + + R+I Sbjct: 133 ILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M V Sbjct: 252 LGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284 >gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 329 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 D+ P +D++ GL + ++ VI + + EF R + G S ++ Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQT 235 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ R +++ T+++ + GG + E L L++ + + K + + + Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ +L + L+ PG+M V+ Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320 >gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 288 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++K + K ++D +D++ +++ G+ + A+ + + + R+I Sbjct: 133 ILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSE 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 193 I-TGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEK 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M V Sbjct: 252 LGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284 >gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 288 Score = 71.6 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66 P LD++ V G+ + ++ + + + R ++ L + L Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRL-VGLE 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +P E F + Q G ++ LA L+ +R+ M + + M A Sbjct: 201 KALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGA 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 K S +I + + L+ +PG + +L+ Sbjct: 261 KMSIPLIAFIMVPIVVLI--AAPGILRMLM 288 >gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3] gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus gammatolerans EJ3] Length = 303 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 6/182 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KR + P+A + S+RAG+ S+A+ + + EF+RV+ G Sbjct: 86 WRVSKRIEEMEKHLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTDEFKRVVGEIRKG 145 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ M V + S +I + + G +S+ L ++ +R+ +K + +A Sbjct: 146 RSTVEALKVMAVRNRKSPVVYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + I V + T M +++ P + V +G +V++ Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAKAQIPTVLNIL--LGFVVIQA 260 Query: 182 MI 183 ++ Sbjct: 261 IV 262 >gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp. Ellin185] Length = 290 Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 71/173 (41%), Gaps = 3/173 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +P+A+D + +VRAGL + +A+ + + +R +F +S+ + Sbjct: 112 EAWPDAVDHVASAVRAGLSIPEALRQLSLHGPEVLREDFAAFARHDAAHGRFDDSLDVLK 171 Query: 74 RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + +GG ++ L LS LR+ + +A++ A ++A + Sbjct: 172 ARLADPAADRLIESLRLARNVGGSDVGRLLRTLSSFLREDASTRAELAAKQSWTVSAARL 231 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ +V F G P+G ++L A I + M+ + Sbjct: 232 ALAAPWLALCVVGFRGEGL--AAYRTPQGVLVLVAGALVSWIAYVAMKAIGRL 282 >gi|29831150|ref|NP_825784.1| hypothetical protein SAV_4607 [Streptomyces avermitilis MA-4680] gi|29608264|dbj|BAC72319.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 209 Score = 71.3 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG +A+ G S + V+ G + +++ + + Sbjct: 44 LAGEVRAGRQPGEALLHAAGDSGG-LGDAQAAVLAAARFGGDVPGALADAAGQPGAEGLL 102 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 V G L+ L L LR ++ +A+++A A+++A ++ +LP Sbjct: 103 GLGACWRVAVDRGAGLAAGLDRLEAALRAERDQRAELRAQLAGARSTAVMLAALPVLGLL 162 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++V+++ G L A G+ ++ Sbjct: 163 LGTALGADPLHVVLHTGAGLACLLAGAVLEGAGLWWALRIVR 204 >gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 802 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 55/146 (37%), Gaps = 4/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + P L+ + AG+ +++ + + E R+ Sbjct: 461 VREIYSRRIDRIEAATPELLERLASLNEAGMSFVESLDRVRDSDLGVLTDEVDRIWTDIS 520 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + +++ R + + ++ T++ + G L L S R ++ + + Sbjct: 521 MGANSPDALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR 580 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 + + ++ + F V ++ F Sbjct: 581 ----QQMFTYLVVIYVSFFVFLVIIF 602 >gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243] gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243] gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 305 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 71/182 (39%), Gaps = 3/182 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K +P+ +D ++ VRAG+ + + + + +++ F + H Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 +L S++ + + + + +Q+GG +L L +L ++R + +A++ Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A A + P+ + ++ + P G ++L A ++ ++M Sbjct: 233 LARQSWTVTGARLAAVAPWLILAMLLAKDQTL--EIYATPTGSVILTSGAVVSVVAYLLM 290 Query: 180 RL 181 Sbjct: 291 LR 292 >gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2] Length = 355 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 3/179 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P L + + AG+ +++ + + + EFR VI+ H G S Sbjct: 173 RRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHKGSSF 232 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++++ M VS I + GGNLS+ L ++ +K + Sbjct: 233 EDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYVQKIN 292 Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181 + + + + + +V ++ LI D G ++ + A I I +++ Sbjct: 293 GISFVYMFMTVVMPTLLIVVILAGSIFVKRLIVDVTGLAVIFLMGFPALSFIIITIIKR 351 >gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1] gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1] Length = 305 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 71/182 (39%), Gaps = 3/182 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + K +P+ +D ++ VRAG+ + + + + +++ F + H Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 +L S++ + + + + +Q+GG +L L +L ++R + +A++ Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A A + P+ + ++ + P G ++L A ++ ++M Sbjct: 233 LARQSWTVTGARLAAVAPWLILAMLLAKDQTL--EIYATPTGSVILTSGAVVSVVAYLLM 290 Query: 180 RL 181 Sbjct: 291 LR 292 >gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 298 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 70/168 (41%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT + A+ I+ V +G+P+ +A+ + + + EF+ +E G+ + Sbjct: 117 KRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIESGVPQN 176 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R +P Q + +I + G +++ L ++ +L ++ K A + Sbjct: 177 DALDHLARRVPSQSLRRAIDIILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYAGELTP 236 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A+++ S+ + F G + +++ F + Sbjct: 237 MSMAYMLISVVVPSLGMSVFVILGSLAHFNTKAIIYIIPPFLLIFQIF 284 >gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1] gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 305 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 77/188 (40%), Gaps = 10/188 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + KR + P+A + S+RAG+ S+A+ + + EF+R + + G Sbjct: 86 WRLTKRIDEIEKSLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKRTVAEINKG 145 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ +V + S +I + + G +S+ L ++ +R+ ++ + +A Sbjct: 146 RPTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKA 205 Query: 122 LSMEAKA----SAWIIGSLPFCVS--TLVYFTSPGYMNVLINDPRGHMLLGVA---AAFM 172 + ++ +G L + + +SP + D +L+ A Sbjct: 206 STGMQIMFFTITSGFVGPLILGIVTQVMSSMSSPELGIMFPMDSMTTILMAFVVVQAVLS 265 Query: 173 LIGIMVMR 180 +G+ ++R Sbjct: 266 GLGMGIIR 273 >gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] Length = 289 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +R DFP+ L+ ++ V AG+ VS A V S + E R V+ Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G S + + + E++ F + + G + L + + + A Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 K K + + ++ ++ +P + Sbjct: 252 KRLGEEASTKM---LFPMMLMFIAVILIVATPAVL 283 >gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2 [Ralstonia solanacearum UW551] gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2 [Ralstonia solanacearum UW551] gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 326 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 5/144 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VI + + EF R + G +++ Sbjct: 172 DELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLL 231 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ + +++ T+++ + GG + E L L++ + + K + + K + Sbjct: 232 RIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 290 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + L+ PG+++V Sbjct: 291 -VVMVLTLLPALLIITAGPGFVSV 313 >gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 326 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 5/144 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VI + + EF R + G +++ Sbjct: 172 DELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLL 231 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ + +++ T+++ + GG + E L L++ + + K + + K + Sbjct: 232 RIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 290 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154 ++ L + L+ PG+++V Sbjct: 291 -VVMVLTLLPALLIITAGPGFVSV 313 >gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 316 Score = 70.9 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 6/142 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + P L+ + S+ AG + DA+ + S + E RV+ G+ ++ + + Sbjct: 173 QAELPTVLEFLALSLAAGEGLLDALRRVARVGSGELAMELGRVVADVGTGIPVTRAFDDL 232 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R + + VS ++ + G L+E L ++ R+ AK + L + + Sbjct: 233 ARRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDARE----VAKRELLESAGRKEVGM 288 Query: 133 IGSLPFCVSTL--VYFTSPGYM 152 + L F + L V+ PG Sbjct: 289 LVPLVFLILPLTIVFALFPGIF 310 >gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 289 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58 + + +R DFP+ L+ ++ V AG+ VS A V S + E R V+ Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G S + + + E++ F + + G + L + + + A Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 K K + + ++ ++ +P + Sbjct: 252 KRLGEEASTKM---LFPMMLMFIAVILIVATPAVL 283 >gi|302870514|ref|YP_003839151.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302573373|gb|ADL49575.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] Length = 282 Score = 70.5 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 2/162 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +++ ++ + + A+ + P+R + + + G L +++ + Sbjct: 102 ELLRDTLSSAAGLEQAITATAPVTPQPIRPQVQALAGAVRGGARLPDALRAFAADLADPT 161 Query: 81 VSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + GG LS+ L +L+ R+ ++ +V + +A +I Sbjct: 162 ADLVVRALTQAAGYHGGQLSQCLTSLAATARELAGIRMRVATKRAATRTAARVITGTSVA 221 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + G++ G ++L V A G + Sbjct: 222 MVAGLILLNRGFLAP-YRSVTGQLVLLVVGAVFAGGFWWLAR 262 >gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 303 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 63/152 (41%), Gaps = 6/152 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + + P+ ++++ +V AG P+ A+ + + +D E +++ G S Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAADNGDS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ S++ + ++ I + G L+ L + R A+ Q L+ Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLASVLRSQVADSR----AVARTQLLTE 269 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154 K ++ + F + L V+ PG + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFAMYPGLVAL 301 >gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 291 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 1/135 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+ +++I +V AG PV A+ V S P+ R + H G SL ++S Sbjct: 148 LTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSLPAALSD 207 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + Q VS F+ + + GG L++ L N +R RD + E Sbjct: 208 LSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEEGGKAEISMMIP 267 Query: 132 IIGS-LPFCVSTLVY 145 ++ LP V ++ Sbjct: 268 VVFLILPITVIFTIF 282 >gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3] gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 358 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 3/179 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + P L + + AG+ +++A+ + V EF V++ H G S Sbjct: 176 KRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHKGSSF 235 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++++ M VS I + GGNL++ L ++ +K + Sbjct: 236 EDALTKFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKIN 295 Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181 + + + + + +V +M L+ + G +++ + I IM+++ Sbjct: 296 GISFVYMFMTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFLLGFPTLSFIIIMMIKR 354 >gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 312 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ K R + P +D++ GL + ++A + S + E R + + Sbjct: 150 LESKAKSRGDAVNAEIPFFVDMLALLQGVGLSLEQSLASLAQTSEAGIPLLAGEMREMGK 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 +G E++ ++ + + ++ + GG++++ L + + L++++ M Sbjct: 210 HIAIGRPRVEAMQKLAEQLGDPDFEELVNMLRQIERFGGDVAQPLRDFAGRLQEKRQMAL 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + + + K +A + ++ + + Sbjct: 270 RERVGKLNVKMTAVMTLTMLPALLLI 295 >gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 314 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 2/146 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R + +FP D++ +V AG A+ + S + EF + G S Sbjct: 163 IKRRATRMAREFPTVADLLALAVAAGESPIAAMERVARTSHGALPDEFAATVADIRAGTS 222 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +S++++ + PL + F +S+ + G L+E L ++ R+ K ++ + Sbjct: 223 VSQALASLGTRTPLDSLGRFGEGVSIAIERGTPLAEVLRAQAQDARE--ESKRELMETAG 280 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPG 150 + + + +V+ PG Sbjct: 281 QREILMLVPVVFFVLPLVIVFAIFPG 306 >gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus sp. AM4] Length = 303 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 6/182 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR + + P+A + S+RAG+ S+A+ + + EF+RV+ G Sbjct: 86 WRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKG 145 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ M V + S +I + + G +S+ L ++ +R+ +K + +A Sbjct: 146 RSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + I V + T M +++ P + V +G ++++ Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAQAQIPTVLNIL--LGFVIIQA 260 Query: 182 MI 183 ++ Sbjct: 261 IV 262 >gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC BAA-2122] Length = 288 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 6/156 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQH 60 IK P LD++ V G+ + ++ + + + +E Sbjct: 136 RIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVDRQLARVVTLTVERAK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + L +++ +P E + Q G ++ L+ LS+ +R+ M + + Sbjct: 196 I-VGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTLSKDIRELNMMDIEEK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 M AK + ++ + + L+ +P M V+I Sbjct: 255 IGKMGAKMTMPLVVFIMIPMLVLI--VAPKVMRVMI 288 >gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5] gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative [Pyrococcus abyssi GE5] Length = 308 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 74/182 (40%), Gaps = 8/182 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I KR + P+A + S+RAG+ S+A+ + + +EFRR + Sbjct: 88 NFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKR 147 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ + + S +I + + G +++ L ++ +R+ +K + + Sbjct: 148 GRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKERK 207 Query: 121 ALSMEAKA----SAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A + S +G + + + + F + M V + P G + L + ++ G Sbjct: 208 ASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQL--PSGELKLILWLFSVIQG 265 Query: 176 IM 177 + Sbjct: 266 FV 267 >gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54] Length = 246 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 ++ + R P LD++ V AGL A+ P+R + Sbjct: 89 LRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAALQAAAANGPSGPLRDALAGALAQV 148 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ +I M V ++T ++ LG +L L + R ++M+A+ Sbjct: 149 RAGVPRVAAIQAMADRCGSPLVHRWATALAHADALGISLGPLLRAQAAHCRSERHMRAER 208 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ K +IG + C ++ F Sbjct: 209 LAMQAPVKMLLPLIGCIFPCTFLVLAF 235 >gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110] gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60 L ++ A P+ +D++V AG+ + +A + + S P+ +++ Sbjct: 144 LKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETNPPMARVLHCLLDDLR 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + S++ ++ + F T+++ Q G + +AL N++ LR + K + + Sbjct: 204 ILPNRSDAFDKLG--TTSDGLRRFGTMVAQSLQYGTPVGQALRNIAVDLRRERITKLEER 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 A + AK + ++ L + ++ Sbjct: 262 AHKLGAKLTIPMVLFLLPAMFVVL 285 >gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27] gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27] Length = 298 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L + RM + + + + I + G L++ L ++ R+ +V Sbjct: 206 SGDTLERCLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARN----ATRVA 261 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150 + K ++ L F + +++ PG Sbjct: 262 LIEQAGKKEIAMMFPLVFFILPVTILFAIFPG 293 >gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c] gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 323 Score = 69.7 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I+ R + L +FP +++ +V AG A+ + + + E R + Sbjct: 167 LTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVARLTHGELGYELRLALADAR 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ + Q Sbjct: 227 AGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVRE----AGRRQ 282 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVLI 156 L + ++ + F V +++ P ++ Sbjct: 283 LLESGGRKEIAMMVPVVFLVLPTTVIFAFYPALVSFTF 320 >gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 309 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 60/152 (39%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R + +++FP +++ +V AG + A+ + S + E + + Sbjct: 154 LARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRGELSRELTQALGEAR 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + + V+ F + + + G L++ L + R+ Sbjct: 214 TGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRAQATDAREAARQH---- 269 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150 ++ + ++ + F V +V+ PG Sbjct: 270 VIAEGGRREILMMIPVVFFVLPVTVVFAMYPG 301 >gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K + P+ALD++V AGLP+ A+ + + + V +EFR + Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L + + ++ Q G ++++AL LS +R + Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + V +V Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299 >gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a] gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a] Length = 316 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L +FP +++ +V AG A+ + + + E R + Sbjct: 160 LTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L ++ F ++V + G L++ L + +R+ K Q Sbjct: 220 AGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQAMDVRE----AGKRQ 275 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F V +++ P ++ Sbjct: 276 LLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSF 311 >gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii DSM 2375] gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii DSM 2375] Length = 305 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P AL + ++AG + D + + + + EF+RV++ G S +++ M Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW--I 132 + + +S I ++GGNL+ +L ++ + +K K + + + I Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P + ++ S +++ + M + ++ + ++ M Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSGEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158] gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158] Length = 303 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I++R K + P+ LD IVR V G V A + + +P+RS V Sbjct: 115 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDDVSRMLR 174 Query: 61 LGLSLSESISRMVRYMPLQE 80 G+ + ++ + + E Sbjct: 175 GGVEIDRAMMHVAKVYRTDE 194 >gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 313 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K + P+ALD++V AGLP+ A+ + + + V +EFR + Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + L + + ++ Q G ++++AL LS +R + Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + +A + + +I + V +V Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299 >gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3] gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3] Length = 316 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I +R + L +FP +++ +V AG A+ + + + E R + Sbjct: 160 LSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L +++ + L + F ++V + G L++ L + R+ K Q Sbjct: 220 AGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLADILRAQAVDARE----AGKRQ 275 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F V +++ P ++ Sbjct: 276 LLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSF 311 >gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist] gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist] Length = 298 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +KKR K L++ P+A + + SV AG V DA+ I S E ++V+ Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L + RM + + + + I + G L++ L ++ R+ +V Sbjct: 206 SGDTLERCLKRMAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARN----ATRVA 261 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150 + K ++ L F + +++ PG Sbjct: 262 LIEQAGKKEIAMMFPLVFFILPVTILFAIFPG 293 >gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain protein [Methanobrevibacter smithii DSM 2374] gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain protein [Methanobrevibacter smithii DSM 2374] Length = 305 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + P AL + ++AG + D + + + + EF+RV++ G S +++ M Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW--I 132 + + +S I ++GGNL+ +L ++ + +K K + + + I Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P + ++ S +++ + M + ++ + ++ M Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333] Length = 315 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R A+ + +FP +++ +V AG A+ + + + +E R + Sbjct: 160 LTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQGELSAELGRTLADVR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ ++ + R L VS F+ ++V + G L++ L + K + Sbjct: 220 AGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAAD----ARDAGKRE 275 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150 + + ++ + F V +V+ PG Sbjct: 276 LMESGGRKEVAMMIPVVFLVLPVTVVFALFPG 307 >gi|146351305|ref|YP_001210532.1| putative typeII /IV secretion system integral membrane protein, TadB related [Arthrobacter nitroguajacolicus] gi|146218869|emb|CAL09940.1| putative typeII /IV secretion system integral membrane protein, TadB related [Arthrobacter nitroguajacolicus] Length = 290 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 66/162 (40%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + G + + V + + + ++ + ++ + S ++ + Sbjct: 114 LSGLITTGAILEHVLQVSLRNAPEEIKPQVSNLVSRLNYRWSPPAALKAFADELNDATAD 173 Query: 83 FFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + GG L++AL +L+ I+ D + +++ + + +A ++ + Sbjct: 174 IVVAHLLLAYKIRGGGLADALDDLASIINDEVRHRREIETDREKPRTTAKLVTLITAVSL 233 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 T + + ++ +P G +LL + A ++ ++ MR M Sbjct: 234 TFMALFAGQFLAA-YKEPLGQLLLTIYLAGYVMILIWMRQMT 274 >gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii ATCC 35061] gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii ATCC 35061] Length = 305 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 69/173 (39%), Gaps = 2/173 (1%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P AL + ++AG + D + + + + EF+RV++ G S +++ Sbjct: 129 LNFELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALME 188 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + + +S I ++GGNL+ +L ++ + +K K + + + Sbjct: 189 MSLRVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIY 248 Query: 132 --IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I P + ++ S +++ + M + ++ + ++ M Sbjct: 249 TFIAILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301 >gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein [Methanobacterium sp. AL-21] gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp. AL-21] Length = 371 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 74/177 (41%), Gaps = 2/177 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R+ + + P AL + +RAG+ + D++ + + EF R +E G + + Sbjct: 191 RSNEASRELPFALRQMATELRAGIGMHDSMRSVALSGYGALSEEFARALEEIKYGETTEK 250 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ M + + + I+ GG+L++ L ++ MK K + + + Sbjct: 251 ALTDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNSF 310 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182 ++ ++ V T++ + + + P ++L + M++ +++ + Sbjct: 311 TMIYMFVAILGPVITMIMLIAASTVMGSVLPPMLLLILYLFLFPMIVAFMAFMIKRL 367 >gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 334 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57 ++ K R + +++ P +D++ GL V ++ ++ + +R E + Sbjct: 170 LRSRAKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQ 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G + +S RMV ++S ++ + GG + E L S LR+++ Sbjct: 230 LYNTGRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASF 289 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + S+ K + ++ +L + LV PG++ V+ Sbjct: 290 KEKIGSITVKMTGVMVLTLLPAL--LVITAGPGFLAVI 325 >gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 287 Score = 69.0 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 111 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELKDQ 170 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++GG L + L L+R LR+ ++++ +A +A + Sbjct: 171 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEARQSWVVNAAKLGV 230 Query: 135 SLPFCVSTLVY 145 + P+ + L+ Sbjct: 231 AAPWIILALLS 241 >gi|119716451|ref|YP_923416.1| type II secretion system protein [Nocardioides sp. JS614] gi|119537112|gb|ABL81729.1| type II secretion system protein [Nocardioides sp. JS614] Length = 310 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 65/173 (37%), Gaps = 5/173 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71 L+ + + AG + A+ + + P+ E ++ + S + + Sbjct: 106 LEALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRA 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGN--LSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + ++ + + + G LS+AL L+ + + ++ A + + + Sbjct: 166 FAEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTT 225 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A + + V ++ FT Y+ P G ++L V + + ++ MR M Sbjct: 226 ARTVTVITLGVLGMLAFTG-DYIEP-YGSPLGQVILAVLLSAYVATLLWMRRM 276 >gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 303 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + + P+ ++++ +V AG P+ A+ + + + E +++ G S Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAADNGDS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ S++ + ++ I + G L+ L + R A+ Q L+ Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154 K ++ + F + L V+ PG + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301 >gi|134298693|ref|YP_001112189.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1] gi|134051393|gb|ABO49364.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1] Length = 334 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 1/171 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ +K+ + P+A+ +I + + A+ +V +S +P RS FRRV+E + G Sbjct: 155 QKRSKYTEQIPSAIRVISTVLEDTNDFTRALENVVERSPEPTRSLFRRVLERLNHGEQRK 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + + M + V+ + G L+ ++ + L + + Sbjct: 215 KVFGLIPKAMGTGHSIMLANVLEEGYRHGVAALPMFNTLASQFDTMHKLELNNKVLLIPS 274 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S+ ++ + L P M I D G L+ + M+I I+ Sbjct: 275 RFSSVLLHIGVVALVLLSTRLVPDAMK-YITDNIGKSLVVLCFVSMIINIV 324 >gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 300 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + +FP LD++V + +A + +++ + + + E + ++ LG Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALGT 206 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ R M +EV + G N E L +R LR R+ KA + Sbjct: 207 GMVEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295 >gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 295 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 7/142 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + D P+ +++ SV AG V A+ + S P+ ++ R + G L +++ Sbjct: 152 EIAADLPDVAELLALSVGAGENVVAALERVSA-GSGPLCAQLRHSLGRVRTGTPLLDALV 210 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + I+V + G L+E L + R+ + + L + Sbjct: 211 DLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRR----LLETGGRREV 266 Query: 131 WIIGSLPFCVST--LVYFTSPG 150 ++ + F V +V+ PG Sbjct: 267 QMMVPVVFGVLPVTVVFAVFPG 288 >gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 303 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + + P+ ++++ +V AG P+ A+ + + + E +++ G S Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAADNGDS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ S++ + ++ I + G L+ L + R A+ Q L+ Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154 K ++ + F + L V+ PG + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301 >gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM 20476] gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM 20476] Length = 205 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 7/157 (4%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 K+R + P +D + ++AGL A + + D + + Sbjct: 51 RRKRRQREASAAIERHVPEMMDAVALGMKAGLSFDSAFGLYHARFDDELARACAQAHTEW 110 Query: 60 HLG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +S ++++ M + F++ +S + G ++ L LS + + + Sbjct: 111 ESGLVSREQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRME 170 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + + ++ + L+ P + +L Sbjct: 171 EKVAKVPVRM--LMPTAMLILPAMLIVVLGPVMLELL 205 >gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae PB189-T1-4] Length = 229 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-L 63 ++KR L P LD+++ + AGL ++ + + F V+ + LG + Sbjct: 79 LQKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQGALADAFSAVMLQERLGIV 138 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E++ ++ + M L +S F + + + G L LA + +RD + + + Q Sbjct: 139 SKREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIRDAQRSELEEQIEK 198 Query: 124 MEAKA-----SAWIIGSLPFCVSTLVYFTSP 149 + K + + L V L+ +P Sbjct: 199 VPVKMLIPMGTLIVPAMLISIVGPLIASAAP 229 >gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR] gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR] Length = 237 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 1/145 (0%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 + L K + P+ D+I + +G+P+ A+ + SD + E ++ Sbjct: 80 RQLALKNNKAIVRQLPDFCDLISMMIASGIPLISALEKVSASCSDLLLAREITSMLSRLR 139 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++S+ + +++ +S+++ Q G +L+++L + LR A+ + Sbjct: 140 RGTSFAQSMYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKR 199 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A K ++ ++ Sbjct: 200 AQEAPVKLLFPLVTCFFPVNFLVIL 224 >gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis 3_1_45B] gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis 3_1_45B] Length = 297 Score = 68.6 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + L ++R + P A+D++ + G+ + +A + + + V EFR Sbjct: 140 LSELAERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRY 199 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ + ++ R+ ++E+ + + Q G L+EAL +++ R + + Sbjct: 200 EM-LVVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSEL 258 Query: 118 KVQALSMEAKASAWIIGSLPFCV 140 + +A + A +I + F V Sbjct: 259 EQKAGRISAVIGVPLIVLVLFPV 281 >gi|269128337|ref|YP_003301707.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313295|gb|ACY99669.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 331 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 74/183 (40%), Gaps = 2/183 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R L+ + + ++ + + A+ V ++ ++ R +++ H + + Sbjct: 95 ERRAMARLEALAAWTESLRDTIAGAVGLEQAIPSSVRAAAPALQQPLRTLVDRLHTRMPM 154 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124 E++ R + + + ++L G L + L LS R +M+ +V+A Sbjct: 155 PEALRRFADDLNDPSADLVVAALILNARLRGPGLRDMLTALSASARAELDMRRRVEADRR 214 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S ++ + + L+ + Y+ + G M+L V A + +R + Sbjct: 215 ATRRSVNVVVGVSVGTALLLTIFNRSYVEP-YDGLLGQMVLCVVLALYAAAFLWLRRLAR 273 Query: 185 FDV 187 +D+ Sbjct: 274 YDM 276 >gi|326330147|ref|ZP_08196458.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951960|gb|EGD43989.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 284 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 59/161 (36%), Gaps = 3/161 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + G+ + A+ + + P+ E ++ +I + Sbjct: 110 LSGVLTVGVGLEQALITTLRSTPKPIAGEVTNLVARLRSRWDTERAIRTFADELDDATGD 169 Query: 83 FFST-VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + +I + G L+ L +L+ + + + +V+A + +A+A + + V Sbjct: 170 LVAAYLIRASRRRGAGLASVLEDLAVSVAEDVRARRRVEADRAKPRATARWVTIISASVL 229 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + FT G P G ++L + + ++ MR M Sbjct: 230 VFLAFT--GSYVAPYGTPLGQVVLALLLTAYVATLVWMRQM 268 >gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 715 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 4/143 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K+R + P+ LD + AG V +V + + + + + +R G Sbjct: 478 HKRRVRRIESAVPDFLDRLASVNEAGTSVVGSVRRVADSNLEALTDDLQRTRRDIDWGAD 537 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ R+ R + S +I+ + G++ L + R +++ + + Sbjct: 538 VGTALRRLERRVRSPMTSRAVALITNAMRASGDVGPVLRIAADESRATWSLRRERR---- 593 Query: 125 EAKASAWIIGSLPFCVSTLVYFT 147 + + I+ + F V + + Sbjct: 594 QVMLTYLIVIYISFLVFLGIIAS 616 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 69/187 (36%), Gaps = 16/187 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + R A+ P + + R+G+P + + + +E + Sbjct: 157 LDQRAHARGAEIDATLPRTVAFMYALSRSGMPFPRVMDTLAENEAVYGEAATELSVAVRD 216 Query: 59 QHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RK 113 + G ++ R R P +++ F+ ++ G +S L++ + ++ ++ Sbjct: 217 MNAFGTDALTALQRTSRRTPSDDLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQ 276 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAF 171 ++ + EA +A + G L F +V + +++ D P +++ + Sbjct: 277 QQYLELLSTFAEAYVTALVAGPLFFITILVV-------IGLVLEDTLPLLRVVVYLGVPL 329 Query: 172 MLIGIMV 178 G +V Sbjct: 330 ATFGFVV 336 >gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 296 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 1/130 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ P ALD+ V + G + + + I Q +DP+ E R + G + + Sbjct: 147 QRSRLIYRRIPYALDLSVLVLETGGTLREGLEEISLQ-NDPLAEELRITLLEMDSGSTQA 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M + + L+ + T I+ + G + L + + R+R+ + + A+ Sbjct: 206 AALRGMGQRVGLESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKMAVEAPT 265 Query: 127 KASAWIIGSL 136 K + + + Sbjct: 266 KMTFPNMMIM 275 >gi|300711546|ref|YP_003737360.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus jeotgali B3] gi|299125229|gb|ADJ15568.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus jeotgali B3] Length = 669 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 58/153 (37%), Gaps = 3/153 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L + + G+ + +++ V+ SS P+ EF + G SL +S Sbjct: 449 RTAITGSLSDTLRKLSSANETGMTLLESIRVVAETSSGPLAREFEVIHAKVAYGTSLKDS 508 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + ++ +IS + ++ L ++ +R ++ + ++ + + Sbjct: 509 LTEFNNEYHIPRLARTVKLISKAQEASSQITAVLTTAAQASENRDEIERERRSRT---RM 565 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 II + ++ +++V+ G Sbjct: 566 QVVIILMTYLTLLAVMAILKTQFLDVMAGLDTG 598 >gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium evestigatum Z-7303] Length = 750 Score = 68.2 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 KR K +FP+ L + +V G+ + D++ ++V ++ + E R++ + G+ Sbjct: 528 KSKRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVKTDNEGLSDETRKIWKDISWGME 587 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L++++ R + Q VS T+I+ ++ G++ E L +R + MK + SM Sbjct: 588 LNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRE---RSM 644 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 II ++Y S ++ + Sbjct: 645 NMMIYIVIIYISYMVFVGVIYVISTTFLTEM 675 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 15/185 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64 R P A+ + + G+ + + + + E +I G Sbjct: 214 RKRNIDSHLPYAVTFMYALSKGGMNIINVFDSLSRSSNTYGEASKEVETIIREMDYFGHD 273 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KNMKAKVQ 120 L +IS + P + GG++S+ + S + + + Sbjct: 274 LRTAISNVSEMTPSDRFQDLLHNLLTVIDSGGSISKYFQDKSDQYLKKAIDDQKGFLETL 333 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L E+ +A++ G L + + M ++ M+ V A + IG ++ Sbjct: 334 GLLAESYVTAFVAGPLFIIIMGI--------MMTVMGSGSILMVYAVIYAVLPIGSVMFV 385 Query: 181 LMINF 185 +MI+ Sbjct: 386 VMISI 390 >gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1] gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus NA1] Length = 304 Score = 68.2 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 8/186 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR + P+A + S+RAG+ S+A+ + + EF++ + G Sbjct: 86 WKITKRIEEMEKMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKKTVAEIKKG 145 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ V + S +I + + G +S+ L + +R+ +K + +A Sbjct: 146 RSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERKA 205 Query: 122 LS-MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLI---- 174 + M+ G + + +V I P +L I Sbjct: 206 STGMQVMFFIVTSGFIGPLILGIVSQVMGAMSTGEITFPIDTIKTILLGFVVLQAIVSGL 265 Query: 175 GIMVMR 180 GI V+R Sbjct: 266 GIGVIR 271 >gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 301 Score = 68.2 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 66/184 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R K F + +RA + A+ + + P++ I Sbjct: 113 LDNRRSNRIYKLEQQFGAFTRDVSVYLRANPNLYRAIESVTEYAGQPLKQYLDAFIRRVE 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ES+ + + +S + I ++++ + + + + + Sbjct: 173 SGEPIDESLKQFKTETNIDSISEWVDSIIFARMAKSDITDVCDHSADRINRKLVRGMNIH 232 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+ + K +A+ + L + +S +++++ G M+L A + I ++ Sbjct: 233 AVLSKTKGAAFAMLGLIALMVVYTILSSAETKDLILSTGTGQMILIYVIASLFITTYIIM 292 Query: 181 LMIN 184 I+ Sbjct: 293 KQID 296 >gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter ruminantium M1] gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter ruminantium M1] Length = 201 Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 2/136 (1%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P AL + +RAG + DA+ IV + EF RV+E G + + Sbjct: 25 ISKELPYALRQLSTELRAGKSLFDALDSIVDSDYGVLSREFSRVLEEIKYGETSENAFLN 84 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + +S I ++G NLS +L ++ + +M+ K++ S + A Sbjct: 85 LEKRVNSKALSRVIYEILASLRIGSNLSHSLNIIAEDV--NFDMRMKLKEYSEKLNAFIM 142 Query: 132 IIGSLPFCVSTLVYFT 147 I L ++ Sbjct: 143 IYTFLAILAPVIILTM 158 >gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5] gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5] Length = 355 Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 70/179 (39%), Gaps = 3/179 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P L + + AG+ +++ + + + EFR +++ H G S Sbjct: 173 RRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSF 232 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ M VS I + GGNL++ L ++ +K + Sbjct: 233 EDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKIN 292 Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181 + + + + + +V + LI D G +L + A LI I++++ Sbjct: 293 GISFVYMFMTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKR 351 >gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638] gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638] Length = 309 Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 2/151 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I +R P+A + S+RAG+ S+A+ + + EFRR + G Sbjct: 90 RITRRIEDMEKALPDAFFYLAGSLRAGVSFSEALEELASAKFGALTLEFRRTVSEIKRGR 149 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 E++ V + ST+I + + G +++ L ++ +R+ ++ + +A Sbjct: 150 PTVEALRAFALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERKAS 209 Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYM 152 + + G + + +V + G + Sbjct: 210 TGMQMMFFLVSSGFVGPFIVAVVSNIARGMI 240 >gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649] gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649] Length = 288 Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 3/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + AG+ + A+ + + DP+R E R+ + +++ + Sbjct: 111 LSGVLTAGVGLEQALIATLRSTPDPIRPEVTRLASRLRARWTTEDALRAFADDLDDATGD 170 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + + G L+ L L+ + + +++A + +A+A + + V Sbjct: 171 VVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADRAKPRATARWVTLITISVL 230 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + T Y+ P G +LL + + + ++ MR M Sbjct: 231 AFLALTG-QYVAP-FGTPLGQVLLVLLLSLYVATLVWMRRMT 270 >gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 311 Score = 67.8 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ + + +FP +++ SV AG + A+ + + P+ S+ V+ Sbjct: 155 LTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKLAHGPLVSQLSGVLAETR 214 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ + L+ ++ F ++V + G L++ L + +R +K Q Sbjct: 215 AGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVLRAQAADVR----ALSKRQ 270 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F V +++ PG + + Sbjct: 271 LLESGGRKEIAMMVPVVFLVLPITILFALYPGLLAI 306 >gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 299 Score = 67.8 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH- 60 + +++ ++ P AL I++ S+ +G +++A+ +V + V FR+VI Sbjct: 73 SMMYEQKIETLENNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEH 132 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S E+I+ + + + + ++ + GG+LS++L L++ L D K+ K ++ Sbjct: 133 QKISFEEAITVVSTLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLL 192 Query: 121 ALSMEA-KASAWIIGSLPFCVSTLV 144 +++ I+ + V+ L+ Sbjct: 193 SVTASGLAVGFIILCGVIPAVAGLL 217 >gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 67.8 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 + R + +FP LD++V + +A + +++ + + + E + ++ LG Sbjct: 147 AQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 206 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ R M +EV + G N E L +R LR R+ KA + Sbjct: 207 GMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295 >gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] Length = 308 Score = 67.8 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 75/180 (41%), Gaps = 1/180 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + F NAL I +R +S+A+ + + P++ EF +I+ ++ Sbjct: 127 RVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNVAYPLKGEFIYIIKEIDSNTNILN 186 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + V+ + + + N+S+ S +R R K+ A K Sbjct: 187 ALKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLNAKLSGLK 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +I + ++ +++ +SP + + L ++P G +L + + + + IN +V Sbjct: 247 FISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIFRKINKEV 305 >gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 301 Score = 67.4 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 + R + +FP LD++V + +A + +++ + + + E + ++ LG Sbjct: 148 AQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 207 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ R M +EV + G N E L +R LR R+ KA + Sbjct: 208 GMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 267 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 268 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 296 >gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1] gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1] Length = 304 Score = 67.4 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 63/183 (34%), Gaps = 4/183 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + + L+ + +AG+ + + + P+ R + + G+ Sbjct: 105 ASQRIERL-EALAQWLNHLAGVHQAGISLPQTIRASAKAAPGPIAPNVRALADRLRSGME 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123 ++ + + + + G LS+AL L+ + + ++A Sbjct: 164 AEDAFAHFADELADGVADHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEADR 223 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + S+ ++ + C+ + + + + P G ++L + + +R + Sbjct: 224 AKVRKSSRMVS-MVICLVVVGCMLNDAW-SGWYKTPLGQLVLALLGGAFAWTLTWLRRIA 281 Query: 184 NFD 186 Sbjct: 282 RTK 284 >gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter michiganensis subsp. sepedonicus] Length = 274 Score = 67.4 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D +V +VRAG+ + DAVA + +R FR S + ++ + Sbjct: 98 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELKEQ 157 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++GG L + L L+R LRD ++++ +A +A + Sbjct: 158 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEARQSWVVNAAKLGV 217 Query: 135 SLPFCVSTLVY 145 + P+ + L+ Sbjct: 218 AAPWIILALLS 228 >gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 719 Score = 67.4 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R + P+ LD + AG+ V ++ + P+ E RR G Sbjct: 490 LRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQSDLGPISEELRRTWRDIQWGA 549 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 SL ++ R + VS T+I G ++ L + +D Sbjct: 550 SLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQD 597 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 63/183 (34%), Gaps = 8/183 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + + R + P + I R+G+P +A + EF + Sbjct: 158 LDQRARARRVQIDAALPQTIAFIYALSRSGMPFQKVLATLTENQHVYGEAAREFGVAVND 217 Query: 59 QH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G L ++ RM P Q + F+ ++ G +LS L + + Sbjct: 218 VQTFGTDLPTALRRMAERTPSQRLDDFTENLTSVLTSGQSLSAFLHEQYDRFQAESEAQQ 277 Query: 118 K--VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ L+ A+ ++ + P + T++ + L P +++ + + Sbjct: 278 QQYLELLATFAEVYVTVLVAGPLFLITILVVVGLVMQDTL---PLLRVIIYLGLPLASVA 334 Query: 176 IMV 178 +V Sbjct: 335 FVV 337 >gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 303 Score = 67.4 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + P+ ++++ +V AG P+ A+ + + +D E +++ G S Sbjct: 154 ARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAADNGDS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ S++ + ++ I + G L+ L + R A+ Q L+ Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154 K ++ + F + L V+ PG + + Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301 >gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 286 Score = 67.4 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 7/158 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K+ A+F + P LD+ +++ LPV+ A+ + + E R + Sbjct: 130 INDRAQKKKAQFESEIPRFLDLFQTAIKINLPVATAIKITAESIDGILSEELLRALVVTE 189 Query: 61 LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG S +S+ + + + S F I Q G +++E++ SR ++ + AK Sbjct: 190 LGTSNWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKE 249 Query: 120 QALSMEAKASAWIIGSLPFC--VSTLVYFTSPGYMNVL 155 QA AK ++ I+ + + ++ P M +L Sbjct: 250 QA----AKTTSLILIPVVVFKMIPLMIILFLPVIMQIL 283 >gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile QCD-76w55] Length = 317 Score = 67.4 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 4/182 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59 K L KR K + + II+ + +S ++ + +P+ SE ++ + Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQS--QLGGNLSEALANLSRILRDRKNMKA 117 LG+ + E +S + R + + FS V S + + L D + +K Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ M ++I+ + F S GY++ +IN+ G M L +L+ + Sbjct: 247 DLRKEIMGPVRESYIMVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILLCVW 306 Query: 178 VM 179 + Sbjct: 307 FI 308 >gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 672 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++R K + FP+ L+I+ + + G+P+ +A+ ++ S + E R V Sbjct: 443 LYERERRREQKINERFPDTLNILSSANQMGIPLVEALNLVSRWSEGVLGKELRMVRNDIR 502 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S+ + + + +V+ +++ + +LS+ ++ + R+R ++ K + Sbjct: 503 WNHDVERSLLKFANRLDVPQVTRTMKLLAKGNHASSDLSKIISIAAEDTRNRYEIERK-R 561 Query: 121 ALSMEAKASAWIIGS 135 M A + IIG Sbjct: 562 RNEMNAYMAIVIIGF 576 >gi|108801767|ref|YP_641964.1| type II secretion system protein [Mycobacterium sp. MCS] gi|119870918|ref|YP_940870.1| type II secretion system protein [Mycobacterium sp. KMS] gi|108772186|gb|ABG10908.1| type II secretion system protein [Mycobacterium sp. MCS] gi|119697007|gb|ABL94080.1| type II secretion system protein [Mycobacterium sp. KMS] Length = 262 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +AL+++V +R G A G+ V R V LG ++ + Sbjct: 87 ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVSDSLRAVAARARLGADVAAGLHDTG 146 Query: 74 RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + G +++ + R + +R+ ++ A A+A+A + Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRASAGMAGARATAAV 206 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP L + +L+ G LL + G++ + Sbjct: 207 LAGLPVLGICLGQMIGADPVRLLLGGGAGAWLLLIGVTLSCAGLLWSDRIT 257 >gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7] gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7] Length = 303 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +KH K R A ++ + +I AGL V A+ V+ + + E + Sbjct: 141 LKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQEGRGITPQLARELDLALA 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARGTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205] Length = 529 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + FP+ L + + GL ++ A+ + + E +++ + G+ S+ Sbjct: 277 KNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLATSEYGALNDEVKKMSDQLSWGIKFSDV 336 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---ALSME 125 I + + V +I+ + GG +S+ L + R+ K ++ + + + Sbjct: 337 IKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSRELKFLEGERKRAIGSYIA 396 Query: 126 AKASAWIIGSLPFCVSTLVYF 146 +++ + +V+ Sbjct: 397 VIWTSYFVFLGVIVTLAVVFI 417 >gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] Length = 290 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 67/153 (43%), Gaps = 3/153 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++ K + FP+ L + S R G+ ++D++ V + E +R+ G Sbjct: 57 MLHTRKIKKMEERFPDFLRDVAESSRFGMTLADSIVVASSGKYGALTDEIKRMASKISWG 116 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +++ + + + +I ++ GGN+++ L+ ++R R+ + AK + + Sbjct: 117 VPVKDALLSFNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARES-QLAAKERNI 175 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M +++ + F + + ++ + Sbjct: 176 EMFT--YGFVLLTSFFVFLATIIILNNSFLPEM 206 >gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP] gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP] Length = 302 Score = 67.0 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 3/149 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I KR P+A + S+RAG+ S+A+ + + EFR+ + G Sbjct: 83 WRIVKRIEDMEQMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFRKTVAEIKKG 142 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ V + S +I + + G +++ L ++ +R+ +K + +A Sbjct: 143 RPTVEALKAFALRNKKSPVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKA 202 Query: 122 LSMEAKASAWIIGSL--PFCVSTLVYFTS 148 + I P + + + Sbjct: 203 STGMQTMFFIIASGFVGPLILGVVSQVIA 231 >gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str. Loch Maree] gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium botulinum A3 str. Loch Maree] Length = 308 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 76/180 (42%), Gaps = 1/180 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + F NAL I +R +S+A+ + + P++ EF +I+ ++ + Sbjct: 127 RVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNIAYPLKGEFIYIIKEIDSNTNILD 186 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + V+ + + + N+S+ S +R R K+ A K Sbjct: 187 TLKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLNAKLSGLK 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +I + ++ +++ +SP + + L ++P G +L + + + + IN +V Sbjct: 247 FISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIFRKINKEV 305 >gi|297564240|ref|YP_003683213.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848689|gb|ADH70707.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 211 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--ISRMVRYMP-L 78 ++ +RAG P +A+ + ++ V SL+++ + R P L Sbjct: 54 VLAAELRAGQPPEEALRISAAEAGPLVG--------------SLTDAASLRREAEREPDL 99 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +++ + V + G L+E + L+ L +++ + + A + + +A ++ +LP Sbjct: 100 WALAYLAVCWEVAADTGAGLAEVVDALAANLTEQEEQRTEAAARTTGPRTTAIVLAALPA 159 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L P G L A +G M+ Sbjct: 160 VGLLLSSGLGGSPLVFLFTTPLGLACLVGGVALDALGTWWTLRMVR 205 >gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 299 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 1/136 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62 L + + K ++ P AL IIV ++ +G +++A+ +V + V F RV+ Sbjct: 74 LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS ++++ + + + + ++ + GGNLSE L L++ L D + K ++ ++ Sbjct: 134 LSFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSV 193 Query: 123 SMEAKASAWIIGSLPF 138 + + A +I+ L Sbjct: 194 TANSLAMGFIMICLVV 209 >gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42] gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42] Length = 300 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + +FP LD++V + +A + +++ + + + E + ++ LG Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 206 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E++ R+ M +EV + G N E L +R LR R+ KA + Sbjct: 207 GMIEALQRLEARMTAEEVVRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++AK ++ ++ VS L+ +P + ++ Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295 >gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6] Length = 402 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 9/151 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ + + +P + + AGL + A+ I E R G+ Sbjct: 260 IRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARNEP-----EAERCCYEMENGVL 314 Query: 65 LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ +R E + +++ Q + G LSE L ++ + + +A+V Sbjct: 315 EQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRARVLGEK 374 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ + L+ P ++ Sbjct: 375 AAVRM---VLPMGMMLLIVLIIVMVPAFLTF 402 >gi|297161945|gb|ADI11657.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 304 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 66/179 (36%), Gaps = 2/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + ++ +++ ++ A + AV + +R E + + G SL Sbjct: 105 RRTERMEALALWTEMLRDTLSAAAGLEQAVLTTADIAPSALRRELGDLAVSVRSGQSLPA 164 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + + +Q + L+ L L+ +R++ M+ ++ A Sbjct: 165 SLRSFADEVDDPLADVVVAALVMAAQRQASQLAALLGELADSVREQVAMRQRIDAGRASI 224 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A + ++ ++ + + Y++ N G ++L + A + + + Sbjct: 225 RAGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLSGQVVLAIVGALFALSFTWLTAIGRL 282 >gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2] gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2] Length = 305 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 71/189 (37%), Gaps = 10/189 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I KR + P+A + S+RAG+ S+A+ + + EF R + Sbjct: 85 NFRIIKRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 144 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ + + S +I + + G +++ L + +R+ +K + + Sbjct: 145 GRPTVDALRAFALRNKRSPIIYRSMMIIIEALERGAPMADVLVAVGNDVREILRIKNERK 204 Query: 121 ALSMEAKA----SAWIIGSLPFC----VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 A + S +G ++ + ++ G + + L + F+ Sbjct: 205 ASTGMQMMFFLTSGGFVGPFIVAVVSNIAKFITLSNAGIQIPVSDLRIILWLFSIIQGFV 264 Query: 173 L-IGIMVMR 180 +GI V+R Sbjct: 265 TGVGIGVIR 273 >gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 297 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 + L R +FP LD++ + +GL + I +++ + + RR++ Sbjct: 134 LHFLKGVRQRAITAEFPFLLDLLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVF 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+S ++ R + +++ G L+ AL +R +R+ A Sbjct: 194 DLDRGMSYDAALGRWAERTAVGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHA 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + +I + +V Sbjct: 254 RESIGRISVQMVLVLIACFLPAIFIVV 280 >gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM 2661] gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 299 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62 L + + ++ P AL I++ ++ +G +++A+ +V + V FR+V+ + Sbjct: 75 LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS ES++ + + + + ++ + GG+LS++L L++ L D K K ++ ++ Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSV 194 Query: 123 SMEA-KASAWIIGSLPFCVSTLV 144 + I+ + V+ L+ Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217 >gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM 44233] gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM 44233] Length = 302 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 6/172 (3%) Query: 18 NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +AL S+R AG + +A+ +S +R R++ + + ++ + Sbjct: 103 DALVAWTESLRDTIAGHHSLENALPSSAVHASPLIRPALLRLVGQIRARVPVDRALVMLA 162 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ G+ L + L++L+ R+ M+ ++ A E + I Sbjct: 163 DELNDPSADLVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFADRAEIRRGTQI 222 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + + L+ Y+ + G ++L + +R + + Sbjct: 223 IVVVTVVFAGLLVVFGGDYVRP-YSTLSGQVVLAIVVGIFAAAFAWLRRLAD 273 >gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM 16841] gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM 16841] Length = 415 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 14/160 (8%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRV 55 K+R K ++P + + + AG+ + A I S+ P+ E Sbjct: 258 KRRKEKLQSEYPELVSKLTILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLIT 317 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 G+ + + R L F +++ + G L + L + + Sbjct: 318 CHEIESGVGEARAYERFGERCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERK 377 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 AK K + F + ++ P ++++ Sbjct: 378 NLAKKSGEEAGTKM--LFPMMMMFGIIIVIIMV-PAFLSL 414 >gi|72160531|ref|YP_288188.1| integral membrane protein [Thermobifida fusca YX] gi|71914263|gb|AAZ54165.1| putative integral membrane protein [Thermobifida fusca YX] Length = 250 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 4/180 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + I +R G A+A + + + +E G Sbjct: 66 LARRRLR----GCADVCRAIAAELRCGSSPGKALAAALRGADPLIAAELAEAAVLAEAGH 121 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ R + + V + G ++ + L+ L + + ++ Sbjct: 122 DPVPALRAASRRPGGTAWASLAVCWQVAASSGTGVAAVVERLADALAHQDALHRELDIHL 181 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++ LP + + L P G L A G+ R ++ Sbjct: 182 AGPRTTAVLLAGLPIAGLLMASALGGAPLLFLFTTPLGWGCLCAGIALNAAGVWWTRRLV 241 >gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 301 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 72/143 (50%), Gaps = 3/143 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62 L + + ++ P AL I++ ++ +G +++A+ +V + V + F++V+ Sbjct: 77 LYENKMETLENNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQK 136 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S E+++ + + + + ++ + GGNL+++L L++ L D + K ++ ++ Sbjct: 137 ISFEEAMTIVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSV 196 Query: 123 SMEAKASAWII--GSLPFCVSTL 143 + A +II G +P + L Sbjct: 197 TASGLAVGFIILCGVIPAVAALL 219 >gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829] gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829] Length = 153 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%) Query: 3 HLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L +KR L + P LD+I + +GL ++ + + + F+R + L Sbjct: 1 MLTRKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRL 60 Query: 62 GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ S ++ + + + ++ F++ + + G L L++ ++ +RD + + + + Sbjct: 61 GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + K I + + L+ P Sbjct: 121 IEKIPVKM--LIPMGVLIVPAMLISIMGP 147 >gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5] gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5] Length = 295 Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 69/179 (38%), Gaps = 3/179 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L + T P + +VR+GL + +A++ + V R+V+ +G Sbjct: 75 YLNRSFTRSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGGEVGKMLRQVVLLTEMG 134 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ E+I+R L + +++ + GG + +AL ++I ++ + + Sbjct: 135 VTFQEAIARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQIFGAIRSYEEERATT 194 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178 + + L +S + + ++ L P + AA G+M+ Sbjct: 195 INPHVLTIYAATILYVILSLTILYVFVMPLSRLQGIPGALGKINPGVYAAVMYYSGVMI 253 >gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 328 Score = 65.9 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 4/145 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + + K + PN L I RAGL + +V + + E R + + G Sbjct: 106 YRKARYINKVEEYLPNFLRDIAEMSRAGLTLPASVETVAKGEYGEMTKEIRMMDASLSWG 165 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S +++ + M ++ +I+ ++ GG +S L +R + K ++ + + Sbjct: 166 ISFEDTLENFGKRMNTHLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRGN 225 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147 +I + F V V Sbjct: 226 MA----VYVVISYMSFFVFIFVILM 246 >gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 268 Score = 65.9 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 23/170 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------------------ 46 +++R + P+ L ++ V AG V A+ D Sbjct: 101 MERRRQDMVLALPDVLGKLMLLVGAGETVQRAIIRCADGREDVTGSSINKGKKRKKAKLE 160 Query: 47 -PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALAN 104 P+ E+ R+I + G S ++SI R +QE S F+TV+ + + GG+ AL Sbjct: 161 HPLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVLALKE 220 Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 LS L +++ A+++ +K + L+ +P + + Sbjct: 221 LSFSLWEKRKATARMRGEEASSKL---VFPLAGIFFLLLIAVAAPAVLMM 267 >gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638] Length = 355 Score = 65.9 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 3/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ P L I + AG+ +++A + + EF +++ H G S Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++S+ M + V+ + I + GGNL++ L ++ +K + Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKIN 292 Query: 126 A-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + +V L+ G + + + A ML ++M MI Sbjct: 293 GLSFVYMFLSVIMPTLFIVVILAGSILSRTLVISIPGLVAIMLFAFPML--SLIMITMIK 350 >gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 292 Score = 65.9 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 6/145 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72 P LD++ V G+ + + + + + ++ + + + +++ Sbjct: 150 LPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGIEKALEEF 208 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 +P E F + Q G ++ + L L+ +R M+ + + + AK S + Sbjct: 209 YEMVPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPM 268 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 I + V ++ +PG M +L + Sbjct: 269 IVFIM--VPIIILIIAPGIMRMLTD 291 >gi|33867074|ref|NP_898632.1| TadB-like protein [Rhodococcus erythropolis] gi|33668908|gb|AAP73902.1| TadB-like protein [Rhodococcus erythropolis] Length = 295 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 60/178 (33%), Gaps = 7/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + + G + A+ + + +E R+I+ + + Sbjct: 96 RLNAME----EWVRNLSGVLAVGTGIEQAIIATHKAMPEALTTEISRLIQRLRTNTPIID 151 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + G+ L+ L LSR + + + V+A + Sbjct: 152 ALRGFADDLDDATGDLIVGSLIQSAAIRGSGLTAVLDRLSRSVAEDVRNRRAVEAARKGS 211 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A + + + ++ P G ++ V A + ++ M+ +I Sbjct: 212 RTTARWVTIITIGFTVGLFLF--TDYMTFYKTPAGQLIFLVQIAGFIACLLWMKKLIQ 267 >gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 233 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 50/108 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT + A+ I+ V +G+P+ +A+ + + + EF+ +E G+ + Sbjct: 117 KRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIESGVPQN 176 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 +++ + R +P Q + +I + G +++ L + +L ++ Sbjct: 177 DALDHLARRVPSQSLRRAIDIILYAIKSGSDIAGTLELIHDMLIKKQQ 224 >gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC 49626] gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC 49626] Length = 248 Score = 65.5 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 12/164 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + I + + + P LD++ + +GL ++ + + S + + + + + + Sbjct: 93 RKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSGVLSEKMSQALLSWQM 152 Query: 62 GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + S ++ + + + F++V++ G LS++L + +RD + + + Sbjct: 153 GATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTIRDDQRAALEAE 212 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + K LP + P + ++ G L Sbjct: 213 IEKVPVKM------LLPLGTLIV-----PAMLIAILGPLLGPAL 245 >gi|256397694|ref|YP_003119258.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363920|gb|ACU77417.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 291 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 57/178 (32%), Gaps = 2/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + +++ ++ A + AV + + + E R + L+ Sbjct: 94 RELARTEAVATFTEMLRDTLSAASGIGQAVRSSCAAAPEAIAGEARGLARRIDDQQDLAA 153 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + +L+ L +L+ R + + QA ++ Sbjct: 154 ALVTFADELRDPTADIVVVCLVHAIRNSAQDLAGLLGSLAVTARTLAAQRKRAQAARVQV 213 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S I+ + + ++ +++ G +L A G + + M Sbjct: 214 RTSVRIVTCVTAGMLAGLFVLDRSFLSP-YGSASGQFVLACGLALFAAGYVWLWRMAK 270 >gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis DSM 15434] gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis DSM 15434] Length = 218 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 64/145 (44%), Gaps = 1/145 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H ++ R + ++ +P A+D++ ++ G+ + +A++ + +R FR + Sbjct: 30 LRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAEAGPPALRPAFRAFALSYT 89 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119 L L E++ R+ + ++ + + G L+ AL LS LR + + + Sbjct: 90 LSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERASRRLM 149 Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144 + + ++ +P+ V + Sbjct: 150 VSSLAWGARGSCLLAFVPWLVIGAL 174 >gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 309 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58 + +KR D P L+++ AGL A+ I + P+ SEFR Sbjct: 141 VNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRIQSTRLAVRPLASEFRSYQAD 200 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 G ++S+ R+ + + +S F + + QLG +++ L Sbjct: 201 LLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMGIAQVL 244 >gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 299 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62 L + + ++ P AL I++ ++ +G +++A+ +V + V FR+V+ + Sbjct: 75 LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS ES++ + + + + ++ + GG+L+++L L++ L D K K ++ ++ Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSV 194 Query: 123 SMEA-KASAWIIGSLPFCVSTLV 144 + I+ + V+ L+ Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217 >gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] Length = 741 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R K + P+ L + + G+ + D++ ++ + +D + E ++V G++ Sbjct: 520 KNRRKKKLEQNIPDLLKKLASTNETGMTLQDSIKLMSRKETDTLSKEIKKVWRDISWGVN 579 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++S+ R + Q V+ T+I+ ++ G++ + L SR ++MK + +++SM Sbjct: 580 INDSLVRFANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRE-RSMSM 638 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 I L F ++Y S ++ + Sbjct: 639 MIYIVIIYIAFLVFV--GVIYVISTTFLTEM 667 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 7/136 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLS 64 R P A+ + R G+ + D + + V E +++ G Sbjct: 206 RKNNIDQQLPYAVTFMYALTRGGMNILDVFKSLAKAEDTYGEVAVEVDTIVKDMEYFGHD 265 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQ 120 + +++ + P + GG++++ + S + + + Sbjct: 266 IRTALANISSTTPSDRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSMVDQKGFLETL 325 Query: 121 ALSMEAKASAWIIGSL 136 AL E+ +A++ G L Sbjct: 326 ALLSESYVTAFVAGPL 341 >gi|134298819|ref|YP_001112315.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1] gi|134051519|gb|ABO49490.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1] Length = 330 Score = 65.1 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 70/180 (38%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ K++ FP + + ++ A++ + ++ +P +S F+ ++ G Sbjct: 150 RKQEKYISQFPIVVRTFLVALEQKGNARSAISYVAERAPEPSKSLFQTILLKIDSGFEPK 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + + F +++ G L L+ + + + + Sbjct: 210 LALKEITKEIKVSHAHLFEQLLADAYYQGTTLIPQFTRLAGQVDAMNELILENAQTTHAG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +I+ L ++ ++ P L + G ++ + +LIGI+ R+M D Sbjct: 270 RIQNFIMHFLVVILAVMLVRVLPESEKYLTQEIGGRTIVLLTFLSVLIGIIFDRMMSKVD 329 >gi|120406354|ref|YP_956183.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1] gi|119959172|gb|ABM16177.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1] Length = 260 Score = 65.1 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 1/166 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ALD+++ +R G A+ +S + V LG ++ + R L Sbjct: 90 ALDVLIGELRVGAHPVAAMNTAAQESDARIAGALGAVAARALLGADVAAGLRAQGRRSLL 149 Query: 79 Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G ++ + R + +R+ + +V+A A+A+A I+ LP Sbjct: 150 PGHWDRLAVCWHLAQAQGLAIATLMLAAQRDIAERERFRGRVEAGLAGARATAAILAGLP 209 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + ++ L + G LL F+ G++ + Sbjct: 210 VLGVLLGHAIGAEPLSFLFSGGFGGWLLVTGTVFVCCGLLWSDRIT 255 >gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 338 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + +R + +++ P +D++ GL + ++ ++ + + SE + Sbjct: 174 VSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQEFGSVLPVLSSELAMANQ 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +S+ R+ Q+++ ++ + GG + L + LR+++ + Sbjct: 234 LYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQGPLQDFGIRLREKRQARF 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + ++ K + ++ +L + +V PG+M V+ Sbjct: 294 KEKIGAITVKMTGVMVLTLLPAL--MVITAGPGFMAVI 329 >gi|157502153|ref|YP_001485252.1| hypothetical protein pBMB67_066 [Bacillus thuringiensis] gi|87133458|gb|ABD24368.1| hypothetical membrane protein [Bacillus thuringiensis] Length = 305 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 M KKR + + L+ + ++ A S A+ I+ P++ + + Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK+ Sbjct: 170 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 229 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +A ++S I + + + P G ++L + +I Sbjct: 230 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 284 >gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 5/141 (3%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMV 73 P ++ + AGL + A+ + + + + E V+ G ++ M Sbjct: 159 PMLAQLLRVLIEAGLGLDQALLTVATDNREIIPACSQELSVVMRQVEQGAERGTTLLAMA 218 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + +QE+ ++ + GGN+ + L +L DR+ +K + + + + +I Sbjct: 219 RTLDVQELQDLCEMLRQVYRYGGNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTIIVI 278 Query: 134 GSLPFCVSTLVYFTSPGYMNV 154 + +V PG++ + Sbjct: 279 IFFFPALLAVV--AGPGFIAI 297 >gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] Length = 250 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 16/188 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 A+ P+AL I +V GL + A V+ P+ FRRV+ + G + + Sbjct: 32 RARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPD 91 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALS 123 ++ + + + F+ ++ ++ G L E L + ++ R+++ A+++ Sbjct: 92 ALWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYV 151 Query: 124 M---------EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A + + LP ++ I+ P +L + A + Sbjct: 152 LLYYAVVGVFAALSDVLVYFMLPRLAQLTAQVSNAAIRPATISTPDALAVLLLTAILQAL 211 Query: 175 --GIMVMR 180 G++V R Sbjct: 212 VGGLVVGR 219 >gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 59/138 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P L ++ SV++G + A+ ++ + E + + G + Sbjct: 82 QRRDSIDRNMPVFLLALLSSVQSGSNLIKAIEQAAERNLGALTPELKNLKANISWGTPIE 141 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + ++ + ++GG++SE L + + + + +N++ ++ Sbjct: 142 DAFENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPY 201 Query: 127 KASAWIIGSLPFCVSTLV 144 + +I ++ VS L+ Sbjct: 202 TYTIYISFAVFLAVSVLL 219 >gi|86740440|ref|YP_480840.1| putative integral membrane protein [Frankia sp. CcI3] gi|86567302|gb|ABD11111.1| putative integral membrane protein [Frankia sp. CcI3] Length = 302 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 2/161 (1%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + A + A+ + +RSE + L ++ + + Sbjct: 115 LAAAAGLEQAILATAQTAPAAIRSEIALLAARIERRERLGPALRGLADDLDDPLADLVIG 174 Query: 87 VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + S+ LS L L+ R + +M +++ + + ++ + + Sbjct: 175 ALILASEHQARQLSGLLGQLAATARAQVDMLGRIEVGRARMRTTMRVVVVTSIVFAGGLV 234 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +++ + G ++L A G + +R M + Sbjct: 235 VFNRPFLDP-YSTAAGQLVLLAIGAIFAAGFVWLRRMARIE 274 >gi|228942720|ref|ZP_04105248.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975831|ref|ZP_04136361.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982328|ref|ZP_04142604.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407] gi|228777433|gb|EEM25724.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407] gi|228783857|gb|EEM31906.1| Hypothetical membrane protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816931|gb|EEM63028.1| Hypothetical membrane protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 305 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 M KKR + + L+ + ++ A S A+ I+ P++ + + Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK+ Sbjct: 170 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 229 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +A ++S I + + + P G ++L + +I Sbjct: 230 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 284 >gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 298 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 69/168 (41%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT + A I+ V +G+PV +A+ + + V EF+ IE G+ Sbjct: 117 KRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVANGNYGVVSDEFKEAIEEIESGVPQE 176 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R +P Q + ++ + G +++ L+ ++ +L ++ K A + Sbjct: 177 DALDHLARRVPSQSLRRTIDIMLNAIKSGSDVAGTLSLINDMLIKKQQSDMKSYAGELTP 236 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A+++ S+ + F G + +++ F + Sbjct: 237 MSMAYMLISVVMPSLGMSVFIILGSLAHFNTVAIIYIIPPFLLMFQIF 284 >gi|326943832|gb|AEA19722.1| Hypothetical membrane protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 316 Score = 64.7 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 M KKR + + L+ + ++ A S A+ I+ P++ + + Sbjct: 121 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 180 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S+ ES ++ + + F ++ + S+ G + L ++ + +K KAK+ Sbjct: 181 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 240 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +A ++S I + + + P G ++L + +I Sbjct: 241 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 295 >gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] Length = 191 Score = 64.3 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-------PVRSEFRRVIETQHLGLSL 65 F N L ++ S++AG ++++ + + + + P+ + RR+I+ L ++L Sbjct: 46 EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + L+E F+ VI + GGN+ E L + L+ + + + +++ L Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVLLS 164 >gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436] Length = 293 Score = 64.3 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 65/156 (41%), Gaps = 6/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + + + K +A +++ + AG V A+ + S + S+ + Sbjct: 140 LTYRVNTFSKKLNSQVADAAELLALVISAGESVPGALNRVAKVSGPQMASQLESALTQIA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++S+++ + P ++ + + G +LSE L + ++ LR+ ++++ Sbjct: 200 QGTAVSKALKTLANKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLRE-ESLRN--- 255 Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154 L + ++ + F + +++ PG + + Sbjct: 256 LLESGGRKEIAMLIPVVFLILPVTVIFALYPGLIAL 291 >gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium evestigatum Z-7303] Length = 652 Score = 64.3 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR ++ + P + AG+ + DA+++ + +E ++ E + G Sbjct: 433 LRAKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQSKVGIIHTEIGKMKEDINWGT 492 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L++++ + + T I S+ +++ L + +K MK + S Sbjct: 493 NLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLNIAANDAEVQKQMKNQ---RS 549 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 E +II F +VY + +++ + + Sbjct: 550 TEMYVYVFIIYMAFFVYLFIVYILTVHFLSSMPST 584 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 15/163 (9%) Query: 20 LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYM 76 L + R GL + D + EF ++ G + ++ Sbjct: 142 LYAMTRG--GGLSLFDIFKSLSNHKHIYGTAAEEFGYIVRDMEFFGHDIITALQNAKLRT 199 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWI 132 P Q + GG+++ L N + R + + + E+ S ++ Sbjct: 200 PSQNFRELIDGLISILSSGGDITAYLKNKTEQYRSVAKTEQQTFLETLGILAESYVSVFV 259 Query: 133 IGSLPFC-VSTLVYFTSPG-----YMNVLINDPRGHMLLGVAA 169 + L + ++ +P Y+ + I P G M+ + Sbjct: 260 VAPLFLMTILVVLGLLNPTSILIMYLLIYIAVPFGTMVFLILL 302 >gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614] Length = 312 Score = 64.3 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 70/157 (44%), Gaps = 6/157 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++ R + L +FP +++ +V AG A+ +V +S + ++ RV+ G Sbjct: 160 VRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGGELSADLARVLAEIRTGEP 219 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + M L V+ F+ I+V + G L++ L + +R+ + + + Sbjct: 220 VATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQAADVRE----AGRRELIEA 275 Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNVLINDP 159 A+ +++ + F V + ++ PG + + + P Sbjct: 276 AARKEVFMMVPVVFLVLPITVLFAFWPGVVGLHLTTP 312 >gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407] gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407] Length = 314 Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 71/185 (38%), Gaps = 5/185 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60 + +R + + ++++V +A ++ + +P+ SE R+ + Sbjct: 125 FIKNRRLNMIEEQVGSFMNLVVERYKAQNDFPKSIKESLYDFKGQEPMYSEIRQTVLDIE 184 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE--ALANLSRILRDRKNMKAK 118 LG+ ++++ + R + + S + LG + L + + + MK+ Sbjct: 185 LGIPTTDAMDNLARRTGNKYLERLSNYYQIAMTLGTEDARENLLGEAFQQFEENRKMKST 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIM 177 ++ A+I+ + + + TS Y++ ++N G + + A M Sbjct: 245 LRKEIAGPVREAYIMVAAIPLLISYQIATSDSYVDFMLNTTPGKIGSTVICAIIMGSIWF 304 Query: 178 VMRLM 182 + + + Sbjct: 305 INKKI 309 >gi|21234166|ref|NP_639743.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|13620652|emb|CAC36691.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 330 Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 4/181 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + R + + L+ + AG+ + + + P+ + R + E G+ Sbjct: 105 AQARIERL-EALAQWLNHLAGVHTAGIGLPATIRASAKNAPSPIAASVRTLSERLRSGME 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123 ++ M + + G L++AL ++ + + ++A Sbjct: 164 AHDAFELFADEMADGVFDHVVLLFQSHAVYKGPGLADALEAMAVTIHQQAADARDIEADR 223 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + SA ++ + C+ L + + + P G ++L + +M++R + Sbjct: 224 AKVRKSARLVSIV-ICIVVLGCMLNEAW-SAWYQTPPGQVVLALLGGGFAWTLMMLRRIA 281 Query: 184 N 184 Sbjct: 282 R 282 >gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3] gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 308 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 5/145 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 I +R + P+A + S+RAG+ S+A+ + + EF R + Sbjct: 88 NFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 147 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++ V + S +I + + G +++ L + +R+ +K + + Sbjct: 148 GRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIKKERK 207 Query: 121 ALSMEAKA----SAWIIGSLPFCVS 141 A + S +G + Sbjct: 208 ASTGMQMMFFLTSGGFVGPFIVAIV 232 >gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 144 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 3/138 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISR 71 L + P LD+I + +GL ++ + + + F+R + LG+ S ++ Sbjct: 3 LQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRLGVISRRAALQD 62 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ F++ + + G L L++ ++ +RD + + + + + K Sbjct: 63 IADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKM--L 120 Query: 132 IIGSLPFCVSTLVYFTSP 149 I + + L+ P Sbjct: 121 IPMGVLIVPAMLISIMGP 138 >gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 647 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 76/171 (44%), Gaps = 3/171 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + L P L+ + + +G+P+ A+A+I + P++ E +++ G+SL Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ R + + E+S T+++ + GN++E L ++ + + ++ + Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVLMISAKDASNAELLRRE---RLSN 542 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 II F +VY + +++ L G ML GI Sbjct: 543 MFMYVIIIYISFFVFIGIVYIITTTFLSTLAESAAKVAESGGTGMTMLRGI 593 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 7/150 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61 I R +K P+A+ + R G+ + + + + V E R++ L Sbjct: 131 ISDRKSKIDRALPHAITFMYSLSRGGMNLIEIFRALSEYYEVYSEVSREAARILRDMEVL 190 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA---- 117 G L +++ V P + F + GG++++ L + + +R Sbjct: 191 GKDLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERARQDQKNFL 250 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + L E+ +A++ G L + V Sbjct: 251 EFLGLMAESYITAFVAGPLFLIIIQTVMVV 280 >gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8] Length = 322 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 65/151 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K + K FP+ L + R+G+P+ A+ ++ + + + G++ Sbjct: 98 VKTKIRKIDAHFPSLLGDLAHLRRSGMPLGAAMGLVAQGQYGVLTKPIKWIDSQMTWGVT 157 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++R + P + ++I S+ GG + E L ++ + K ++ K ++ + Sbjct: 158 FEDALARFAKRYPTPLIRRSISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKSETT 217 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A +++ + V ++ + M V+ Sbjct: 218 PYLAVSYLSYFVFVAVIMILCTSFLPMMEVM 248 >gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct] Length = 304 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 708 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 FP+ L+++ + + G+ + +++A++ S+ + E R + ++ Sbjct: 497 FPDTLNLLSSANQMGISLVESLALVSRWSTGALADELRALRNDIRWNHDAHAALMAFATR 556 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + ++S +I+ + G+LS L+ + R+R ++ K + +M + + +IG Sbjct: 557 LNVPQLSRVIRLIASGGRTSGDLSRVLSVAAEDTRNRYKLE-KSRRRAMGSYIAIVVIGY 615 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 F ++ Y+ L Sbjct: 616 --FVYLFVILMIGASYLGPL 633 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 7/180 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 K + R P+A+ + G+ + + + V EF + Sbjct: 156 KSRAEMRGRSIDILLPHAIVYMYALSHGGMSFLEVIRSVADAPDYGEVSREFEMIARDMD 215 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNM 115 L G L ++ P F + GG+++ L S RD + Sbjct: 216 LFGNDLFTALRNSRNLTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQED 275 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ E +A++ L V+ + + F + L LG+ +L+ Sbjct: 276 FIETLSMLSEVFVAAFVAAPLLLIVTLMVISFLGGDTLVQLYALNYLIFPLGMGLFLLLV 335 >gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] Length = 248 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 2/142 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69 + P L ++ +V AGL + AV + P+ RRV+ + GL++ E++ Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRRVLTLSEVGGLTVEEAL 89 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKA 128 R+ +P F+ +++ ++ G L E L +R + V + Sbjct: 90 WRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149 Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150 I+ L L+Y P Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171 >gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1] gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 303 Score = 63.6 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus paucihalophilus DX253] gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus paucihalophilus DX253] Length = 680 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 57/151 (37%), Gaps = 3/151 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + K + + L + + GL + ++V + SS + EF R+ G+ + Sbjct: 453 RSRHKVIRKLSDDLRKLSSANDTGLTLLESVKNVAETSSGKLADEFDRIHAKVEYGMGMK 512 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ +IS + ++ L ++ ++ ++ + + A Sbjct: 513 AALIEFNNRYHIPRLARTVKLISKAQEASSQITAVLTTAAQTSENQDDIARERR---SRA 569 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + II + ++ +++V+ N Sbjct: 570 RMQVVIIIMTYLTLLAVMAILKTQFLDVMAN 600 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 11/176 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63 R + P+A+ + GL + +A+A + V EF+ V++ + Sbjct: 144 RKREINMLLPDAISFMYALSIGGLNQLEILEAMAK-ADDTYGEVSREFQSVVQETEYFDI 202 Query: 64 SLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAK 118 +I + P E+S FF+ ++S+ GGN++ L R + + + + Sbjct: 203 DYRNAIRKRALETPSDELSQFFTDMLSI-INSGGNMTRFLDDKKDKHMRTAKQEQELTLE 261 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 L E + + L + ++ +L + L +L+ Sbjct: 262 TLELFGEMYMTLSLFPLLLIIILVIMSMLGKAQEMLLYGTVYALIPLTGVGFLVLV 317 >gi|302553075|ref|ZP_07305417.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302470693|gb|EFL33786.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 282 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG +A+ + V+ G + +++ R + + Sbjct: 115 VLAGEVRAGRQPGEALLRAARDCGG-LADAQATVLAAARFGGDVPGALATAARQPGAEGL 173 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L+ LR ++ ++ + A A+ +A ++ LP Sbjct: 174 RGLAACWRVAVDQGAGLAAGLDRLTAALRAERDQRSDLSAQLAGARTTAVMLAGLPALGL 233 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++VL++ G L A +G+ + ++ Sbjct: 234 LIGTALGADPLHVLLHTTAGLGCLMAGGALEGLGLWWVLRIVR 276 >gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145] gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145] Length = 264 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 1/141 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 + + A+ + P+ D++ + +GLP+ A+ + SS + +E V + G Sbjct: 112 RSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSKASSMGYLANEISYVGQQIRRGRD 171 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ + + + + +S + +++ Q G +L+EAL S LRD + A+ +A Sbjct: 172 LTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKKAQEA 231 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 K ++ ++ Sbjct: 232 PVKLLLPLLSCFFPVNFLVIL 252 >gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1] gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2] gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14] gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58] gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719] gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192] gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1] gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719] gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192] gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58] Length = 303 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +KH K R A D+ + +I AGL V + V+ + + E + Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ L+E + + R + + ++ V+ + GG+ L L ++ DR+ Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + AK S ++ L + ++ Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287 >gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative [Thermococcus sibiricus MM 739] gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative [Thermococcus sibiricus MM 739] Length = 308 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 2/145 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + K+ ++ P+A I S+RAG+ S+A+ + EF+R + G Sbjct: 85 WKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALEEASTARFGALTDEFKRTVSEIKRG 144 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ + + ST+I + + G +++ L ++ +R+ +K + +A Sbjct: 145 RSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVANDVREILRIKKERKA 204 Query: 122 LS-MEAKASAWIIGSLPFCVSTLVY 145 + M+A G L + +V Sbjct: 205 STGMQAMFFIIASGFLGPAILGIVS 229 >gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist] gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist] Length = 294 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 69/171 (40%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ ++ ++ +VRAG+ + +A+ + +R F + + + +++ Sbjct: 118 WPDIVENVISAVRAGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNFASAVANAKCA 177 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + LGG L + L NLS +R+ +A++ +A I Sbjct: 178 LADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWVVNAARIAV 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ + N G +++ + A I +M ++ Sbjct: 238 AAPWAVLAIMSTRAET--VSAYNSQAGVVVIILGALSCAIAYKIMMVVARI 286 >gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 672 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R + P+ LD + AG+ V ++ + + E R+ G ++ Sbjct: 451 KYRLRRLEQAVPDFLDRLASLNEAGISVVSSLDRVRDSDVGALDDEVNRIWRDIEWGATV 510 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 +S++R + V+ T+I+ + + L + R Sbjct: 511 EQSLNRFESRVKTPSVTRVVTLITNSMRASNEIGPVLRIAAEQAR 555 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 5/176 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64 R + P + R G+ D + + +E V+ L + Sbjct: 150 RQRQIDASLPRMVAFTYALTRGGMSFPDVLRTLSQNEDVFGEGAAEIGVVVRRMDLFNVD 209 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK--VQAL 122 L ++ + + P ++ + FS + Q G N+S L RD + K ++ L Sbjct: 210 LVTAVQDISQQTPSEQFAQFSENLVSVLQSGQNVSTFLREQYERYRDEAEEQQKEILELL 269 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A+ +I + + T++ L ++ AA +++ ++ Sbjct: 270 ATAAEVYVTVIVAGMLFLVTILLIIGLTVGETLFIMQAIAYVIIPAANLLILSYLL 325 >gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 290 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 5/152 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+K ++ DFPNA+ I V G+ + +A + S +P+ + R V++ + G+S Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ R +E+ FST I+ + G +L++ L + +L + K L Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLL----LNEKKQMVLQ 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KAS ++ + ++ ++ + Sbjct: 257 QGEKASNKLMFPIGLIFIGVLVMIMVPILSNM 288 >gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 284 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + L D+P L + + AG+P+ +A + + + E + + Sbjct: 131 LNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEGILYQEMKNTAMELY 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119 G+ +E+ ++ + FST++ Q G + E L ++S + K + K Sbjct: 191 NGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMSTEAWEEKKHEVKR 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + KAS ++ + + ++ + + N Sbjct: 251 KGE----KASNKLLLPIGLIFAGVLILI----IVPMFNS 281 >gi|297159256|gb|ADI08968.1| putative type II secretion system F protein [Streptomyces bingchenggensis BCW-1] Length = 303 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 3/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG V ++ + + V G ++E++ R R + + Sbjct: 132 VAGELRAGR---QPVEALLATPPGHIGERWGLVSAAARFGGDVAEALRRAARSPGAEGLI 188 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L ++ LR ++ + +++ A+A+A ++ LP Sbjct: 189 GVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRQSLRSRLAGARATAVVLVLLPVLGLL 248 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++VL++ P G L V G +I Sbjct: 249 MGTALGADPLHVLLHTPAGLACLLVGGLLEWAGFAWTSRVIR 290 >gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 351 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 56/161 (34%), Gaps = 26/161 (16%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +R G+ V A E +G+ E +++ E + ++ Sbjct: 63 LRCGMSVPQAWEQA---------------CEDLQVGVDAEEVLNQ-------PEFAQVAS 100 Query: 87 VIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 I V +++G L++AL + L + + ++ +A+ ++ +LP Sbjct: 101 SIRAAGKVSAEIGVGLADALEAIVGSLEEAEENAKSLEVAFASTQATVRLLAALPAVGLG 160 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + + G ++ + G + +R ++ Sbjct: 161 LAWLLGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLV 201 >gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] Length = 295 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 59/139 (42%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++ S+ +G V++A+ ++ + V EF +++ S Sbjct: 78 KIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFE 137 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +I + GG L+ L L++ L D N+K ++ + + Sbjct: 138 DAMTTITENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANG 197 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 198 LVVGLVILCGVIPATAGLI 216 >gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] Length = 248 Score = 62.8 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 2/142 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69 + P L ++ +V AGL + AV + P+ R V+ + GL++ E++ Sbjct: 30 RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEMGGLTVEEAL 89 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKA 128 R+ +P F+ +++ ++ G L E L +R + V + Sbjct: 90 WRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149 Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150 I+ L L+Y P Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171 >gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 680 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 56/150 (37%), Gaps = 3/150 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ +L + + G + ++V + S+ + EF V + G+SL Sbjct: 454 QRSKRAITGKLSESLRKLSSANDTGQTLLESVETVSETSTGKLAEEFEVVHAKVNYGMSL 513 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + ++ +IS + +++ L ++ ++ +++ + Sbjct: 514 RDALVEFNNKYAVPRLARTVKLISEAQEASSEITDVLTTAAQASENQDDIER---NRISQ 570 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II + ++ +++V+ Sbjct: 571 TRMQVAIIVMTYVTLLGVMAILQTQFIDVM 600 >gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049] gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049] Length = 678 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 60/150 (40%), Gaps = 3/150 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + L + + G+ + ++V V+ SS + EF + + G SL Sbjct: 454 QRSRKAIIGKLSENLRKLASANDTGMTLLESVKVVSETSSGKLSDEFETIHAKVNYGTSL 513 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + ++ +I+ + + + L+ ++ ++ +++ + ++ + Sbjct: 514 KDALREFNNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDIERERKSRT-- 571 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II + ++ +++V+ Sbjct: 572 -RMQTVIILMTYLTLLGVMALLKTQFLDVM 600 >gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 286 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 2/142 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +P+ +D + +VRAG + +AV + + R F R + + R+ Sbjct: 109 QWPDVVDTLASAVRAGASLPEAVCALAVRGPRSSRPAFARFAAAHRASGAFEPELRRLQD 168 Query: 75 YMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + Q+GG +L L LS LR+ + + ++ A ++A + Sbjct: 169 ELADPVFDRLAATLRMTRQVGGSDLGTTLRTLSGYLREDQRTRGELLARQSWTVSAARLA 228 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + P+ V L+ T PG + Sbjct: 229 VAAPWVVLALL-ATRPGTLEAF 249 >gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 356 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VIV + +R E R + G S +++ Sbjct: 204 DELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQTLL 263 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ R +++ T+++ + GG + E L +++ + + K + + K +A Sbjct: 264 RIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRMKDEIGRLTVKMTA 323 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ SL + L+ PG++ V+ Sbjct: 324 VMVVSLLPVL--LILTAGPGFLGVI 346 >gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20] Length = 232 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60 HLI R F ++FP L +++ + AG+P+ AVA + + + E V+ Sbjct: 39 HLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAEVEDDKYIARELSLVVRDMVV 98 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S +++ +P Q +V++ S++ L L + +K M+A Sbjct: 99 MGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLDAVLMARLDWMLRQKQMRAASL 158 Query: 121 ALSMEAKASAWIIGS--LPFCVSTLVYFTSP---GYMNVLINDPRGHMLLGVAAAFMLIG 175 S+ ++I + LP + + SP + + DP M+L LIG Sbjct: 159 VRSIAVLFEIYVIAAQLLPILLFIIALSLSPLGTLRIGGISLDPLTVMVLAGLIYSPLIG 218 Query: 176 IMV 178 ++ Sbjct: 219 LVF 221 >gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM 43017] gi|256587413|gb|ACU98546.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM 43017] Length = 282 Score = 62.4 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 5/174 (2%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMV 73 D + L +V +RAG AV + ++ P+ R + + G+ +E R Sbjct: 104 DLASLLRGVVTELRAGAHPVTAVENVAREAPRPLADRLRGLAASARFSGVPTAEPEVRAA 163 Query: 74 RYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++ +T ++ ++ G L++ + R + ++ A +A Sbjct: 164 CGPGMEHVDRIFGRLATSWALSARHGIPLADVFDAVHRDMETTARSARQLDARLAGPRAG 223 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A ++ LP L + VL+ G +L V AA ++ G+ M Sbjct: 224 AAVLAFLPVAGLVLGEAMGAAPIPVLMGTSVGSVLFVVGAALLVAGVAWTSSMT 277 >gi|313835133|gb|EFS72847.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314929111|gb|EFS92942.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970944|gb|EFT15042.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328905819|gb|EGG25595.1| LOW QUALITY PROTEIN: type II secretion system F domain protein [Propionibacterium sp. P08] Length = 293 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 2/159 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLVGPLTRVVARLDSRWDTRSALQGFADDLNSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAATMMAAERGGTGATTTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 V Y+ G +LL + L+G++ Sbjct: 231 VVLAGALILGREYLAP-YRTGVGQLLLCCYTSLYLVGLI 268 >gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 316 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 + R + + P +D++ GL + ++ ++ S +R E Sbjct: 153 LGQFAAARRERVAQELPLFIDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANR 212 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S+ R+ + + +++ + GG + E L S LR+ + + Sbjct: 213 QYSQGRTREHSLQRLATLHKNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEM 272 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + + K + ++ +L + ++ PG++ ++ Sbjct: 273 KDRIGKITVKMTGVMVTTLLPAL--IIVTAGPGFIAII 308 >gi|313764978|gb|EFS36342.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA1] gi|313815462|gb|EFS53176.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA1] gi|313829026|gb|EFS66740.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA2] gi|314916257|gb|EFS80088.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA4] gi|314917527|gb|EFS81358.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA1] gi|314921861|gb|EFS85692.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA3] gi|314930875|gb|EFS94706.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] gi|314955330|gb|EFS99735.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] gi|314959202|gb|EFT03304.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA1] gi|314969037|gb|EFT13135.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA1] gi|315099724|gb|EFT71700.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA2] gi|315102363|gb|EFT74339.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA1] gi|315109820|gb|EFT81796.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA2] gi|327334603|gb|EGE76314.1| membrane spanning protein [Propionibacterium acnes HL097PA1] gi|327454294|gb|EGF00949.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] gi|327456359|gb|EGF03014.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA2] gi|328756053|gb|EGF69669.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA1] gi|328758898|gb|EGF72514.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA2] Length = 293 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ +P+ RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPEPLIEPLTRVVARLDSRWDTRSALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMATERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|296268208|ref|YP_003650840.1| type II secretion system protein [Thermobispora bispora DSM 43833] gi|296090995|gb|ADG86947.1| type II secretion system protein [Thermobispora bispora DSM 43833] Length = 263 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + +A+A + + DP V+ G ++ ++ + + + Sbjct: 100 GEALVNAIAAV--EPPDPAA--LTPVVAAVRDGGDVAAALLSAAPEEGGEGLVRLAACWR 155 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V + +GG L+ + L+ LR+ + + +V A +A+A ++ +LP + Sbjct: 156 VSTSVGGGLAALVDRLAASLREAEAHRQEVAAQLAGPRATARMLAALPLLGLLMATALGV 215 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ P GH L + A G+ R + + Sbjct: 216 SPLPFLLGSPAGHACLLIGLALDAAGVWWTRRLAD 250 >gi|254389726|ref|ZP_05004951.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] gi|197703438|gb|EDY49250.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 7/170 (4%) Query: 18 NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 A++ VR + G+ + + + +R E + ++ + G ++ Sbjct: 113 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 172 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + V + ++ + + G LS+A+ L+ L+ + +V+A + + + Sbjct: 173 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 232 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + Y+ N G +LG A ++ + MR M Sbjct: 233 VTMFCLGIFGITALSG-TYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRM 280 >gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 345 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VIV + +R E R + G S +++ Sbjct: 193 DELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQTLL 252 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ R +++ T+++ + GG + E L +++ + + K + + K +A Sbjct: 253 RIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKMTA 312 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ SL + L+ PG++ V+ Sbjct: 313 VMVVSLLPVL--LILTAGPGFLGVI 335 >gi|326445375|ref|ZP_08220109.1| type II secretion system protein [Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 62.0 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 7/170 (4%) Query: 18 NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 A++ VR + G+ + + + +R E + ++ + G ++ Sbjct: 117 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 176 Query: 74 RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + V + ++ + + G LS+A+ L+ L+ + +V+A + + + Sbjct: 177 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 236 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + + Y+ N G +LG A ++ + MR M Sbjct: 237 VTMFCLGIFGITALSG-TYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRM 284 >gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073] gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073] Length = 316 Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 69/183 (37%), Gaps = 1/183 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ R K ++ A+ I V A+++ + P+ R+ G Sbjct: 134 RVQNRRNKIIEQLAAAVRIFAAEFGDTPQVPRALSITAQKVPAPLGDILRQADTDLAAGK 193 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ + +++ + + F ++ + + L+ + + + + K + Sbjct: 194 SIDDVCLYLMKELDFEYGRMFVQLLRLAWD-DAAVRPLFTRLAGRIANLQGLIYKNASGM 252 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + +L L+ P L+ +P G +L+ V +L+G+++ R++ Sbjct: 253 AYSRFMGMFVNALILPEFLLMRSVVPETGYFLVYNPLGRLLVVVCFLSILVGMILDRVLS 312 Query: 184 NFD 186 + Sbjct: 313 GVE 315 >gi|184200111|ref|YP_001854318.1| hypothetical protein KRH_04650 [Kocuria rhizophila DC2201] gi|183580341|dbj|BAG28812.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 254 Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSESISRMVR 74 A+ + + AG + A I ++DP RV + H +G+ +S ++ + R Sbjct: 66 AVRRLAALLHAGRAPATVFAEITPGTADPTARWITRVCQEVHAAALVGIPVSTTLGQFAR 125 Query: 75 YMPLQEVSFFSTVIS-----------VQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + G +L+ L+ ++ L R + +A ++ Sbjct: 126 RPAAVGDRVLGATARSVCAQLAACWEISERSGSSLARTLSGVAESLESRLDAQAARESAL 185 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + LP L ++ L+ G + L A + G + R ++ Sbjct: 186 AGPRVTVRTLSWLPVLALGLGVLMGTDPVSTLLTTVWGRIALAAGAGLSIAGRLWTRSLM 245 >gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] Length = 412 Score = 61.6 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 67/156 (42%), Gaps = 10/156 (6%) Query: 2 KHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + L+++R K + A+ + AG+ + DA+ + Q++D ++ F V Sbjct: 58 RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVATQTNDAKLKQIFLDVANGI 117 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G+S SE++ + E+ ++ + G+++ AL L+ IL + + + Sbjct: 118 NSGISFSEALKQYQN-----ELGSLVITMATLGEKTGDMAHALFTLASIL---EQINENI 169 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ ++ ++ + P + ++ Sbjct: 170 KKFKKAVRYPIIVLSAMAIAFVIVISYVVPKFKSIF 205 >gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 367 Score = 61.6 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ V+V + SE G + +S+S Sbjct: 217 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSSELDIAQRQFAAGRTREQSLS 276 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + M K + Sbjct: 277 RLASSFENEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 336 Query: 131 WIIGSLPFCVSTL 143 +I +L + + Sbjct: 337 VMILTLLPALMIV 349 >gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 297 Score = 61.6 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 2/164 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + +++ SV G V DA+ Q + +R+ +I S + ++ M + Sbjct: 110 VRLLIGSVSTGKSVPDAIRATRNQVAPVLRAPVDGLIARLDARWSTASALRAMADDLAHP 169 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + V ++ GG +AL L + R R ++ + + + + Sbjct: 170 DADAIIAALIVATRRGGTGTGDALRALGQHSRRRLQSLREIATERAKPRIVVRQVTLITV 229 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 V V +P Y+ + P G +L A L ++++R M Sbjct: 230 VVLVGVAVFNPDYVAPYL-TPTGQLLGAGLLAAYLGSLVMLRRM 272 >gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 295 Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + K+R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LAAVAKRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + +M + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG++ + Sbjct: 254 QEYISKLSAKMSMVMMVFL--FPALLIVLAGPGFIAI 288 >gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA1] gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes HL056PA1] gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA1] gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA2] gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA3] gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA1] gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA2] gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes HL020PA1] gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266] Length = 249 Score = 61.2 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S + + + P Q+ +S G +SE L+ + L+ K + + Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A A ++ LP + V G + Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27] gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27] Length = 294 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 68/171 (39%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ ++ ++ +VR G+ + +A+ + +R F + + + +++ Sbjct: 118 WPDIVENVISAVRVGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNFASAVANAKCA 177 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + + LGG L + L NLS +R+ +A++ +A I Sbjct: 178 LADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWVVNAARIAV 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + P+ V ++ + N G +++ + A I +M ++ Sbjct: 238 AAPWAVLAIMSTRAET--VSAYNSQAGVVVIILGALSCAIAYKIMMVVARI 286 >gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 295 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 17/193 (8%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL +++ S+ +G V DA+ ++ V F +++ LS Sbjct: 79 KIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLSFE 138 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +SI + + + +I + GG L+E L L++ L D +N+K ++ +++ Sbjct: 139 DSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTANG 198 Query: 127 KASAWII--GSLPFCVSTL-------------VYFTSPGYMNVLIND-PRGHMLLGVAAA 170 A II G +P + + +P + + + G + G+ A Sbjct: 199 LAVGLIIICGVIPATAGIIGGYLNAISQVAPNIAAVTPEQLAKCMENVQIGTGIFGILFA 258 Query: 171 FMLIGIMVMRLMI 183 + G+ V R++I Sbjct: 259 VPIFGLKVNRMII 271 >gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic archaeon RC-I] gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured methanogenic archaeon RC-I] Length = 683 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 57/139 (41%), Gaps = 8/139 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + + G+ ++ ++ +I + + E +++ + G +S Sbjct: 456 RERKIASEMPDFLKKLASTNETGMTLTQSINLIANSNFGTLSKEVQKIHKDLQWGTDVST 515 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R + + T+I+ S+ G++ + L + R + M+ + + Sbjct: 516 ALKRFANSLRTSSSTRVITLITKASESSGDIKDVLNIAANDARANELMRKE--------R 567 Query: 128 ASAWIIGSLPFCVSTLVYF 146 +I + +S LV+ Sbjct: 568 FDGMLIYVVIIFISFLVFL 586 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 13/179 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64 R ++ P+A+ + + G + + + + V E VI G Sbjct: 129 RKSRINKGLPSAVTFMYAMSKGGADIITILRSLYEAETTYGEVSREIGFVIRDMDYFGND 188 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQ 120 L ++ P + + + GG+++ L N R R + ++ Sbjct: 189 LRAALINCANQTPSDLLQDLLSNLLSVIDSGGDVTTYLNNKVEQYRMRIALDQKSFLEIL 248 Query: 121 ALSMEAKASAWIIGSL-PFCVSTLVYFTSPG-----YMNVLINDPRGHMLLGVAAAFML 173 L E+ + ++ G L +S+++ + G Y+ + P G ++ V + M Sbjct: 249 GLIAESYVTCFVAGPLFIIIMSSVMTIMNGGSPMILYIIIYAVLPLGSVIFIVMISMMT 307 >gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA1] gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA2] gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA1] gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA2] gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes HL092PA1] Length = 249 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S + + + P Q+ +S G +SE L+ + L+ K + + Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A A ++ LP + V G + Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 255 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A D++ +RAG PV +V + P+ V LG +E+ S + Sbjct: 117 LPLAADLLASVMRAGAPVDRSVLAVAEALDGPLAERLALVGRLLRLGAEPAEAWSTLAA- 175 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +P E + + + G L+ AL L+ LR + + + +A+ S ++ Sbjct: 176 VPGAE-RLIAAALR-SAASGATLAGALTRLADDLRADRATEVE-----AKARRSG-VLIV 227 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 LP + L F G M V+ Sbjct: 228 LPLGLCFLPAFILAGLMPVI 247 >gi|297627215|ref|YP_003688978.1| hypothetical protein PFREUD_20700 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922980|emb|CBL57562.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 265 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 61/176 (34%), Gaps = 5/176 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H ++ K + +A ++ +R G + A+AV + Q +G Sbjct: 83 HRAERSAIKRSQEVAHACRVMSAQLRIGQTPAQALAVAAEEC-----EVLAGCRAAQQVG 137 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ ++ + + G L+ A +S+ + ++A + A Sbjct: 138 ADVPRTLMAAGDLPGCSGLAALGRAWKLCERSGSPLAPAATRVSQTVDGDARLRADIAAE 197 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +A+ ++ +LP + + + + L G L A + G++ Sbjct: 198 LAVPRATGRLLTALPLLGIGMGFVSGGDPVAFLTTTMIGKACLVGAVVLVCAGLVW 253 >gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 633 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 66/155 (42%), Gaps = 4/155 (2%) Query: 5 IKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IKKR P L+ + + +G+P+ A+A+I + ++ E ++ + Sbjct: 413 IKKRQLNTALKLTPVFLNKLASANESGMPIHKAIAMIAKTETSALKKEIEKIKLDLDWKI 472 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL +++ R + + E++ T++ + GN++E L ++ + + ++ + Sbjct: 473 SLEDALIRFANRIRVFELTRTITLLVEALRSTGNVTEVLRISAKDASNAELLRRE---RL 529 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 II F +VY S +++VL Sbjct: 530 GNMFMYVIIIYISFFVFIGIVYIISTTFLSVLAES 564 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 13/183 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH 60 +I R +K P+A+ + R G+ + D I V EF +++ Sbjct: 127 FIISDRKSKINRLLPHAVMFMYSLSRGGMGIIDIFKSIAAYEDVYSEVSKEFAKIVRDIE 186 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK- 118 L L +++ + P + + + GG+++ L + +R + K Sbjct: 187 ILSKDLRTALTEAIENTPSENLKDLLHGLITVIDSGGDVTSYLEERAEFYLERARQEQKS 246 Query: 119 ---VQALSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAA 169 +L E+ +A++ G L + V Y + + P G + + Sbjct: 247 FLDFLSLMAESYITAFVAGPLFLIIIQTVMAVMGQGDELMLYSIIYLIIPIGSFMFAMVI 306 Query: 170 AFM 172 + Sbjct: 307 KLI 309 >gi|159040453|ref|YP_001539706.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157919288|gb|ABW00716.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 300 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 3/154 (1%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + A+ V + + ++ E R + G ++ + + Sbjct: 129 GQGLQAAITGTVATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVCDQVVAALI 188 Query: 90 VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + G L + L +++ + +++A + + + + + V + Sbjct: 189 LHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAVLAY-GLLN 247 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 Y+ P G +++ V ++ + +R M Sbjct: 248 TDYIRP-YGTPTGQLVMAVLGVAFVVLLAWVRAM 280 >gi|290958554|ref|YP_003489736.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260648080|emb|CBG71188.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 286 Score = 61.2 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Query: 18 NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 +A+ + +V RAG A++ S + V+ G + +++ Sbjct: 112 DAVLALCSAVAGEVRAGRQPGAALSRAARDSGG-LGDAGAAVLAAARFGGDVPNALALAA 170 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + + V G L+ L L LR ++ +A ++A A+++A ++ Sbjct: 171 RQPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEGALRAERDQRADLRAQLAGARSTAVML 230 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP L ++VL++ P G L V A G+ ++ Sbjct: 231 AGLPVLGLLLGSALGADPLHVLLHSPAGLGCLFVGAVLEGAGLWWALRIVR 281 >gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL097PA1] Length = 249 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S + + + P Q+ +S G +SE L+ + L+ K + + Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKR 212 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A A ++ LP + V G + Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245 >gi|291438159|ref|ZP_06577549.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291341054|gb|EFE68010.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 324 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG A+ V S + V+ G + E+++ + + + Sbjct: 158 LAGEVRAGRQPGAALLTAVRDSGG-LGDAQAAVLAAARFGGDVPEALAAAAQ-PGAEGLR 215 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L++ L L LR ++ +A ++A A+A+A ++ LP Sbjct: 216 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 275 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + +L++ P G L V +G+ ++ Sbjct: 276 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 317 >gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174] gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174] Length = 342 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 17/160 (10%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE----------FRRVI 56 KR + L D+P+ + ++AG+ V A I SSD +R+ Sbjct: 188 KRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKI---SSDYLRNCPKEGRYAYEAVTTTC 244 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 G++ E+ R + FST++ Q GG +++ L + D + Sbjct: 245 HEMDSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKR 304 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KA+V + K +I L ++ ++ P +++ Sbjct: 305 KARVMGETAATKLLVPMIMMLAVVMAIIMI---PAFLSFY 341 >gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771] Length = 145 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 52/128 (40%), Gaps = 3/128 (2%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +++ + AG+ + A + + ++ G L E+++ + + + Sbjct: 1 MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E + + +LG ++++ L S+ +RD + ++A+ +A ++ K + L Sbjct: 61 DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120 Query: 139 CVSTLVYF 146 +V Sbjct: 121 VSLIIVLV 128 >gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] Length = 290 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 1/142 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63 ++R + LD++V S+ G + A+ + R + T L + Sbjct: 140 AQRRRDELRYALSAVLDLVVISLAGGAGLEQALDDACADTHGWAAGRLNRAVATARLLRI 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ ++ + E+ + +S+ G + ++L + LR + + +A S Sbjct: 200 PPWQALGQLGEDTGVVELQELAATMSLAGTEGARIRDSLTIRAATLRAHQAAALEARANS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVY 145 + S ++ + L+Y Sbjct: 260 ATERMSMPVMLLAAAYMLFLLY 281 >gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon 107 str. F0167] Length = 284 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + I R + L D+P L + V AG+P+ +A + + + E R Sbjct: 131 LNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGLLYQEMRNTAMELS 190 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA-LANLSRILRDRKNMKAKV 119 G+ E ++ + FST++ Q G N L ++S + K + K Sbjct: 191 NGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSNEAWEEKKHEVKR 250 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + +K I+ + ++ P + ++ Sbjct: 251 KGEKASSKL---IMPIGLIFLGVMILIIVPMFASLRF 284 >gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 277 Score = 61.2 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271 >gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 344 Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESI 69 D+ P +D++ GL + ++ +IV + +R E + G S +++ Sbjct: 191 EDELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQTL 250 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ R + + T+++ + GG + E L + +++ + + K + + K + Sbjct: 251 LRIGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKMT 310 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 A ++ S+ + L+ PG++ V+ Sbjct: 311 AVMVVSMLPVL--LIITAGPGFLGVI 334 >gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6] gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus CMCP6] Length = 292 Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 4/129 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66 P LD++ V G+ + + + + + ++ + + ++ Sbjct: 144 RHISSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGIN 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +P E F + Q G ++ + L L+ +R M+ + + + A Sbjct: 203 KALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGA 262 Query: 127 KASAWIIGS 135 K S +I Sbjct: 263 KMSIPMIVF 271 >gi|328758435|gb|EGF72051.1| hypothetical protein HMPREF9563_00343 [Propionibacterium acnes HL020PA1] Length = 256 Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + M L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|295395523|ref|ZP_06805717.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971542|gb|EFG47423.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 277 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 5/169 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 +D V+ ++ G+ + A+ ++ + V R+V LG +++ + Sbjct: 106 VIDWAVQLLKVGIEPARAMTLVADLPDNEVVERVLRKVARAMELGEKPDQALRMYAGELG 165 Query: 78 LQEVSFF---STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 ++ ++V V Q G +E LA+ + RDR + + ++ ++ Sbjct: 166 DEDARILTGMASVWFVSEQAGAPAAEMLASYASTCRDRADAMRERDVALAGPISTVMVLS 225 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + ++ + P G + + ++ G + MR M+ Sbjct: 226 WLPIMSLGLAVLVGADLVELVTSVP-GALSICGGLVLLVAGRIWMRSML 273 >gi|254451819|ref|ZP_05065256.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter antarcticus 238] gi|198266225|gb|EDY90495.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter antarcticus 238] Length = 122 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 44/100 (44%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 + + EF G +++ M + ++EV+ F +IS + G ++S ++ Sbjct: 11 VNPAISEEFLMCQAEILAGRHREQALVDMAERIGVEEVNSFVALISQSMEYGTSISASMN 70 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + +RD + +KA+ +A + + S + + + + Sbjct: 71 AYAIEMRDAREIKAQEKANKLPVQMSGVMASMMLPALFLI 110 >gi|284989191|ref|YP_003407745.1| hypothetical protein Gobs_0593 [Geodermatophilus obscurus DSM 43160] gi|284062436|gb|ADB73374.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length = 264 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 20/180 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIE-------TQHLGLS 64 L AL + +R+G + +A V +D R + G Sbjct: 93 LAALVEALTGLGAELRSGRSLDEATRAAVAACADDDSGRALARAVRSPGDGAGEADDGGE 152 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ R + + ++ G +L+ + + LR R + ++++ + Sbjct: 153 LGRALGR------------VAAAARLSARTGCSLAAVVGAVEDDLRARSRHRLELRSATA 200 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ASA ++ LP + VL G +LL + G++ ++ Sbjct: 201 GSRASAALLAGLPVLGLVMGGGVGADPWRVLTTTGTGQLLLVAGVGLEVAGLVWSARLVR 260 >gi|239929828|ref|ZP_04686781.1| hypothetical protein SghaA1_16497 [Streptomyces ghanaensis ATCC 14672] Length = 290 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG A+ V S + V+ G + E+++ + + + Sbjct: 124 LAGEVRAGRQPGAALLTAVRDSGG-LGDAQAAVLAAARFGGDVPEALAAAAQ-PGAEGLR 181 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L++ L L LR ++ +A ++A A+A+A ++ LP Sbjct: 182 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 241 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + +L++ P G L V +G+ ++ Sbjct: 242 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 283 >gi|289428857|ref|ZP_06430537.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|289157858|gb|EFD06081.1| conserved hypothetical protein [Propionibacterium acnes J165] gi|313806748|gb|EFS45253.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2] gi|313817517|gb|EFS55231.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2] gi|313822021|gb|EFS59735.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1] gi|313824429|gb|EFS62143.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2] gi|313826450|gb|EFS64164.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1] gi|314926543|gb|EFS90374.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3] gi|314961392|gb|EFT05493.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2] gi|314980265|gb|EFT24359.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|314987404|gb|EFT31495.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2] gi|314989055|gb|EFT33146.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3] gi|315082690|gb|EFT54666.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2] gi|315086397|gb|EFT58373.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3] gi|315087884|gb|EFT59860.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|327333934|gb|EGE75651.1| hypothetical protein HMPREF9337_00443 [Propionibacterium acnes HL096PA3] gi|327445235|gb|EGE91889.1| hypothetical protein HMPREF9568_01461 [Propionibacterium acnes HL013PA2] gi|332674640|gb|AEE71456.1| hypothetical protein PAZ_c02530 [Propionibacterium acnes 266] Length = 256 Score = 60.9 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + M L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f] gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f] Length = 294 Score = 60.9 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 62/165 (37%), Gaps = 2/165 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + I + AG + A+A + +R+ + L +++ + +P Sbjct: 109 EQIREGLDAGQHLRAAIAASTDHPPAELADPLQRLAARLRSAMPLPDALWALRAEVPHPT 168 Query: 81 VSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + V + G G+L +A+ + R+ + AL + + ++ +L Sbjct: 169 LGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRAMTLLLALFTG 228 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 T++ P ++ + +G + L V +++ + + M Sbjct: 229 AITVLLVAWPNFLAP-YRNLQGQLALTVIGGGVVLAVRALAAMSR 272 >gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 333 Score = 60.9 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 +K R +D+ P +D++ GL + ++ V+ + SE Sbjct: 171 VKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 230 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 231 QFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 290 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 291 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 326 >gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1] gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 535 Score = 60.9 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 6/170 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + P+ LD + AG+ ++ V + E R G Sbjct: 303 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 362 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++R + VS + + GNL L + + ++ + Sbjct: 363 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNEL- 421 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ + F V + N P G + A + Sbjct: 422 ---LTYVVVIYVSFFVFIAIIVALDTIFIP--NIPTGAATQAGSGASSAV 466 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 22/132 (16%) Query: 36 AVAVIVGQSSDPVRSEFRRVIETQ------------------HLGLSLSESISRMVRYMP 77 A + +S P+ R + Q + G + ++ R+ P Sbjct: 6 AFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDIDNYGADIITALERVGSRTP 65 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KNMKAKVQALSMEAKASAWII 133 +++ F+ + Q G +L L + ++ ++ A EA + + Sbjct: 66 SDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQSQFLELLATLAEAYVTVLVA 125 Query: 134 GSLPFCVSTLVY 145 G L +V Sbjct: 126 GPLFLITILVVI 137 >gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M] gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 267 Score = 60.9 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+I+V +R G A V ++ PV + R V LG ++ + R L Sbjct: 97 ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156 Query: 79 QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + R+ AKV A A+ASA I+ LP Sbjct: 157 PSHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILAGLP 216 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L+ G LL V A G+ + + Sbjct: 217 VLGVVLGQLIGAQPLAFLLGGHLGGWLLVVGLALAAGGLWWSDRITD 263 >gi|289770834|ref|ZP_06530212.1| integral membrane protein [Streptomyces lividans TK24] gi|289701033|gb|EFD68462.1| integral membrane protein [Streptomyces lividans TK24] Length = 311 Score = 60.5 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%) Query: 6 KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++R AK +A+ + VRAG +A+ S+ + V+ Sbjct: 126 RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 182 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 183 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 242 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L +G+ + Sbjct: 243 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 302 Query: 182 MIN 184 ++ Sbjct: 303 IVR 305 >gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656] Length = 289 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 4/146 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR+ + L DF N + + AGL + DA A + + + E + ++ G+S Sbjct: 140 IKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGVS 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALS 123 +E+I + E+ F++ I + G L+ L S + N+K ++ Sbjct: 200 ETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTALLQEQSA---ETWNLKRQLVKRE 256 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSP 149 E +S +I + L+ P Sbjct: 257 GEKASSKLLIPMFLMFMGILIMVIVP 282 >gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 291 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 6/180 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + K AL S+R AG + A+ V ++ +R + + + + + Sbjct: 92 KQEKLAAAKIEALATWSESLRDTIAGAVGLEQAIPATVYAAAPVLREDLALLADRMRVRV 151 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQAL 122 L ++ + + + + + ++L G L + L L+ R +M+ +V A Sbjct: 152 PLPTALRQFADDLDDPTADLIVSALIMNARLRGPGLRQLLGALADTARSELDMRQRVSAS 211 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + SA I+ V + + ++ + +G ++L V A +G++ MR + Sbjct: 212 RAGTRRSAQIVVIFSIVVMLGLAVFNRSFVAP-YSSVQGQLVLVVVVALFAVGMLWMRRL 270 >gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091] gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae DSM 3091] Length = 277 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 L P L + ++AG+ + DA+ + + + EF+ + G + E+ Sbjct: 101 ILKVIPYVLRELSIELKAGIGLFDAIEEVSNGNYGQLSKEFKITLNEIKYGTNYIEAFEN 160 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + L + + ++ GGNL++ L L+ +K K + + + + Sbjct: 161 LSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLMILY 220 Query: 132 IIGSLPFCVSTLVYFTS 148 + ++ V + + Sbjct: 221 MFTTVVIPVILFIMIIA 237 >gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 292 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 4/129 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66 P LD++ V G+ + + + + + ++ + + ++ Sbjct: 144 RHISSRLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTVQRSKV-IGIN 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +P E F + Q G ++ + L L+ +R M+ + + + A Sbjct: 203 KALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGA 262 Query: 127 KASAWIIGS 135 K S +I Sbjct: 263 KMSIPMIVF 271 >gi|305680235|ref|ZP_07403043.1| type II secretion system F domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659766|gb|EFM49265.1| type II secretion system F domain protein [Corynebacterium matruchotii ATCC 14266] Length = 290 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L +IV ++AG + A+ + ++P +R E G S + + P Sbjct: 101 MLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGSAGAELEQ----SP 156 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +S + G L+ L N+ + + +++ +A A A+A ++ LP Sbjct: 157 ILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLALLP 216 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L + G ++L + GI+ +I Sbjct: 217 LLGMVMGHAIGVNVPAFLTSGGVGGLILIAGVSAECAGILWSDHIIQ 263 >gi|145596965|ref|YP_001161262.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145306302|gb|ABP56884.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 300 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 50/154 (32%), Gaps = 3/154 (1%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + A+ V + + ++ E R + G ++ + + Sbjct: 129 GQGLQAAITGTVATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVCDQVVAALI 188 Query: 90 VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + G L + L +++ + +++A + + + + + V + Sbjct: 189 LHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAVLAY-GLLN 247 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 Y+ P G ++ V ++ + +R M Sbjct: 248 TDYIRP-YGTPTGQFVMAVLGVAFVVLLAWVRAM 280 >gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 353 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+V + E G + +S+ Sbjct: 202 VDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSGELEIAQRQFAAGRTREQSL 261 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R+ +++ ++ + GG + E L LR+ + + + M K + Sbjct: 262 ARLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMT 321 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 322 GVMILTLLPALMIV 335 >gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA1] gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA3] Length = 249 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 13/153 (8%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S + + + P Q+ +S G +SE L+ + L+ K + + Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A A ++ LP V G + Sbjct: 213 ARKAGVDAIGPLVCCHLPAFSLVGVVPIIAGMV 245 >gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279] gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279] Length = 218 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYM 76 +DI+ + AGL A+ + S P+ R + GLS + + + R Sbjct: 80 EMVDIVRLGLSAGLSFDAALELYCDGRSGPLAVRLARAHVSWQSGLSTREDELRLVARET 139 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + F+ +S +LG L+E L R +R + + + K Sbjct: 140 GVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKL 191 >gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein [Limnobacter sp. MED105] gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein [Limnobacter sp. MED105] Length = 317 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PV-RSEFRRVIE 57 +K + + R A F + +D++ GL V ++ V+ Q D P+ RR Sbjct: 154 LKTVGEGREAAFERELVAVVDVMRLLQGVGLSVDQSIEVMTSQLYDLVPITGRMLRRSRA 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + RM E F V+ + GG + E L S L +++ A Sbjct: 214 QVKSGVPWIVMLKRMSSMYSSDEFKSFVQVLEQIEKFGGAVQEPLKQFSDRLVEKERANA 273 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + K + ++ ++ + + Sbjct: 274 KETMGKLTVKLTGVMVITMLPALLIM 299 >gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 332 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSIAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5] gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5] Length = 298 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++V S+ +G V +A+ ++ V F +V+ LS Sbjct: 81 KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + +I + GG L++ L L++ L D +N+K+++ +++ Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANG 200 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 201 LAVGLIILCGVIPATAGLI 219 >gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049] gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049] Length = 815 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 45/108 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R ++ D P+ L+ + AG+ V +++ + G + E R+ Sbjct: 467 VRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVRGSDIGVLTEEMHRIWADIR 526 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 +G ++ +++ R R + V+ T+++ G L + Sbjct: 527 MGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVFRIAATQ 574 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 3/150 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIET 58 +K+ R+ + + + R G+ SD + V+ + E + Sbjct: 157 LKNQADVRSRNIDEGMARTIAFMYALSRGGMSFSDVMRVLARNQEIYGDTAREVGVAVRE 216 Query: 59 QHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L G + ++ + R P ++ F +S Q G +L+ L ++ + Sbjct: 217 MDLFGRDMITALEHVSRRTPSEQFKTFIENLSSVLQSGQSLAPFLREQYERHQEEAAERQ 276 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + A A++ + + + Sbjct: 277 EDLLERLATVAEAYVTVFVAAVLFLMTILL 306 >gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro] gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro] Length = 660 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + +G+ +++++ +I + E +++ E G S S+ Sbjct: 445 RMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMGILSKELKKLKEDLSWGTSTSK 504 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + S +I ++ +L L+ ++ R+ ++MK + ++ +M Sbjct: 505 ALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLSITAKQARNDEDMKKE-RSSTMVVY 563 Query: 128 ASAWIIGSLPFCVSTLVYFTS 148 + F + T+ Sbjct: 564 VITIYVAFFVFLFIVYILATN 584 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLS 64 R A A+ + + G+ + D + S E V+ LG Sbjct: 128 RQASIDKSMLPAITYMYALTKGGMSIYDVFRSLSRYSYIFGATAEEISYVVRDMDYLGKD 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S+ P + F + + G ++E + N S + M + + Sbjct: 188 FITSLKIAKERTPSEIFKDFVDGLII-VSSSGTITEYVKNKSEQYQGLAEMANRNLLQRL 246 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A ++ + + +V + Sbjct: 247 DVLAEIYVTALVAGPLFVMVTLVVLQFFLP 276 >gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 337 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 187 DELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQSLQ 246 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 247 RLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKMTG 306 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 +I +L + L+ PG ++VL Sbjct: 307 VMIVTLLPAL--LIVTAGPGMISVL 329 >gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 671 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 60/149 (40%), Gaps = 3/149 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + K D + L + + G+ + +++ V+ SS + EFR + + G SL Sbjct: 448 RSRRKITDSLSDDLRKLSSANDTGMTLLESIRVVADTSSGRLAEEFRVMYAKVNYGTSLK 507 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ +IS + +++ L+ ++ ++ +++ ++ + Sbjct: 508 TALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDDIERNRKSRT--- 564 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II + ++ +++ + Sbjct: 565 RMQMVIIIMTYVTLLGVMALLKVEFLDTM 593 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 11/180 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62 R + +++ + ++ G L + +A+A + V EF+ ++ Sbjct: 142 RKREINVLLSDSVSFMY-ALSVGGLNQLEILEAMAR-ADDTYGEVSQEFQSIVLETEYFD 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LRDRKNMKA---K 118 +I P +E+S F T + GG++ + L + +R K + + Sbjct: 200 TDYRTAIRNQAMQTPSEELSQFLTDMLSIINSGGDMEQFLEDQKEKHMRTSKQEQETVLE 259 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L E + + L + ++ +L G + L A +L+ +V Sbjct: 260 TLELFGEMYMTLSLFPLLLIIIVVIMSMLGEAQDALLYGTVYGLIPLIGAGFLVLVSTVV 319 >gi|21221974|ref|NP_627753.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|4539573|emb|CAB38492.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 321 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 7/183 (3%) Query: 6 KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++R AK +A+ + VRAG +A+ S+ + V+ Sbjct: 136 RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 192 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 193 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 252 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L A +G+ + Sbjct: 253 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGALESLGVWWVTR 312 Query: 182 MIN 184 ++ Sbjct: 313 IVR 315 >gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 3_1_53] Length = 201 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 4/157 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++KKR + D P+ + I V AG+ + +A A + + E +R +E + Sbjct: 48 ISDVMKKRDMEISRDLPSIISKITLLVNAGMVLREAWAQVAQTGDTTLYKEMQRAVEDMN 107 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G+S ++ + +V F + + G +L L S+I K + Sbjct: 108 NGMSEVDAYMDFSQRCQSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQ 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 Q + +K +I V L+ P + N Sbjct: 168 QGETASSKM---LIPIGIMFVGILIMVIVPIFANFSF 201 >gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308378427|ref|ZP_07668749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308380757|ref|ZP_07669274.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|308406205|ref|ZP_07669540.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] gi|308328418|gb|EFP17269.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308352454|gb|EFP41305.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308360493|gb|EFP49344.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|308364119|gb|EFP52970.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] Length = 251 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 81 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 140 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 141 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 200 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 201 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 247 >gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 230 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 3/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG +A+ + S + + V G + E++ R R + ++ Sbjct: 61 VAGELRAGRQPGEALLSV---PSGDLGERWGLVSAAARFGGDVPEALRRAARQPGAEGLT 117 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L ++ LR + + ++A K + ++ LP Sbjct: 118 GVAACWQVAVDEGAGLAAGLDRVASALRAEREQREILRARLAGPKVTVAVLAVLPAFGLV 177 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++ L++ P G L G + +R + Sbjct: 178 MGAALGTEPLHQLLHTPVGLGCLLGGCLLEWAGFVWLRRSMR 219 >gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7] gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7] Length = 283 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 1/146 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59 +K + + F + P+ + + ++ AG+ +S A+ + ++ EF R + +T+ Sbjct: 130 LKQDLSMKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDGDIKKEFVRFLADTE 189 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +++ + + P + F +V+ + G +SE L + + D +K + Sbjct: 190 RNQDDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEE 249 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q E ++A G + ++ L+ Sbjct: 250 QGKKNEIVSTAISTGFIFIPITALLI 275 >gi|117929188|ref|YP_873739.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] gi|117649651|gb|ABK53753.1| putative integral membrane protein [Acidothermus cellulolyticus 11B] Length = 272 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 8/163 (4%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYM------PLQ 79 +R+G +DA+A G+ P + F + + G + V PL Sbjct: 98 LRSGRVPADALAAAAGEMHHPALARLFVAIADAARHG-DIDRVTELFVTPTAKIGGPPLA 156 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 +++ ++ + + G L+ + + ++ ++ +VQ +A+ ++G+LP Sbjct: 157 DLARYAPCWRIGVESGAGLARLVERTANAIQADVDLHQEVQTALAAPRATIRLLGALPIA 216 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 L P G L A A + G++ R + Sbjct: 217 GLLFGTVIGVASWQFLFRHPLGLACLSAAVALEVGGLLWCRRI 259 >gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099] gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC 43099] Length = 684 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/155 (9%), Positives = 55/155 (35%), Gaps = 3/155 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + + GL + ++ + ++ + EF + + G SL Sbjct: 460 RHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVADTTNGKLAREFELMHTKVNYGTSLK 519 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ + +I+ + +++ L + + +++ + ++ + Sbjct: 520 AALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERERKSRT--- 576 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + II V ++ +++ + G Sbjct: 577 RMQVVIIIMTFLTVLAVIAILKTQFIDTMAGLEAG 611 >gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 337 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 187 DELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQSLQ 246 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 247 RLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKMTG 306 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 +I +L + L+ PG ++VL Sbjct: 307 VMIVTLLPAL--LIVTAGPGMISVL 329 >gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1] gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 692 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 6/170 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + P+ LD + AG+ ++ V + E R G Sbjct: 460 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 519 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++R + VS + + GNL L + + ++ + Sbjct: 520 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNEL- 578 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ + F V + N P G + A + Sbjct: 579 ---LTYVVVIYVSFFVFIAIIVALDTIFIP--NIPTGAATQAGSGASSAV 623 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 53/151 (35%), Gaps = 7/151 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58 ++ +R + + + R+G+P+++ + ++ V + Sbjct: 144 RYAAGERARRIDASMERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDI 203 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KN 114 + G + ++ R+ P +++ F+ + Q G +L L + ++ Sbjct: 204 DNYGADIITALERVGSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQS 263 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ A EA + + G L +V Sbjct: 264 QFLELLATLAEAYVTVLVAGPLFLITILVVI 294 >gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 372 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 5/145 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+V + SE G + +S+ Sbjct: 221 VDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLASELEIAQGQFAAGRTREQSL 280 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 SR+ +++ ++ + GG + E L LR+ + + + M K + Sbjct: 281 SRLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMT 340 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNV 154 +I +L + ++ PG M+V Sbjct: 341 GVMILTLLPAL--MIVTAGPGVMSV 363 >gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] Length = 697 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 57/149 (38%), Gaps = 3/149 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + S GL + +++ + +S + EF + + G SL Sbjct: 462 RHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVSDTTSGKLAREFEMMHTKVNYGTSLK 521 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + ++ + +I+ + +S+ L +R + +++ + ++ + Sbjct: 522 QALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERERKSRT--- 578 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II V ++ +++ + Sbjct: 579 RMQVVIIIMTFMTVLAVIAILKTQFIDTM 607 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 63/177 (35%), Gaps = 7/177 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62 R + +++ + ++ G L + +A+A + V EF+ +++ Sbjct: 151 RRRQINMLLTDSVSFMY-ALSVGGLNQLEIIEAMAQ-ADDTYGEVAKEFQSIVKETEYFD 208 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +I + P E+S F T + GG++ L + + ++ Sbjct: 209 IDYRTAIRKQALETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQELTLE 268 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ SL + ++ + + +M + +G ++M Sbjct: 269 TLELFGEMYMTLSLFPLLLIIIMVVMQMIPQASVTNTMLYMTVYALIPLTGVGFLIM 325 >gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] Length = 90 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++E +S ++R+R ++ K+ AL+ + K WI+ S+P + ++ P M +++ Sbjct: 1 MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60 Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G++L+ V A ++GI+++R ++N D+ Sbjct: 61 HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90 >gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 274 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+++ KRT L P +DI V++G+ + ++++ + + +V Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + E L LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + I L + +V SP + ++ Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 271 >gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] Length = 264 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K +I +R L P +DI V++G+ + +++ + + ++ + Sbjct: 104 IKKIIARRVESILKSLPFFIDITAACVQSGMTIDSSLSYAARKFELINPDLSLIILKMAK 163 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + + E+ F + + G + + L LS+ +R+ + + Sbjct: 164 RAEIN-GLESAIKELHQCSTATEIKMFCSTLQYSISFGSTVYDQLIKLSQDIREMQLLVT 222 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + + + + +V SP + ++ Sbjct: 223 EEKISKLSTKLTLPLFIFI--LIPFVVLVISPSVLELI 258 >gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202] gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202] Length = 236 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 87 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 146 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S + + + P Q+ +S G +SE L+ + L+ K + + Sbjct: 147 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 199 Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152 A A ++ LP + V G + Sbjct: 200 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 232 >gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM 20098] gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM 20098] Length = 448 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++ ++ +LG + L ++S R + + +A+ ++ +LP L Sbjct: 114 LASACALSERLGCEVHRCLQSVSDSYRRECKARDLRKEAFAAPQATIRLMSALPLATVAL 173 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 F + L + P G L + + ++G++ +R + Sbjct: 174 GEFMGAHPITFLFSSPTGLACLVAGSVWYVLGLLWIRRL 212 >gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 256 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69 + P L ++ +V AG+ + +A V+ G P + FRRV+ + GL++ E++ Sbjct: 36 RLEGQIPQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEAL 95 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 R+ +P F+ +++ ++ G L E L +R + + ++ Sbjct: 96 WRVASELPSPNFRRFALIVAEGARSGARLGEVLGVAARSFAVVVDFRREL 145 >gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1] gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1] Length = 301 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + P L+ + S+ AG + DAV + S + +E RV+ + + GL E++ Sbjct: 168 LTAELPVVLEFLALSLSAGEGILDAVRRVSQVSGGELSNELARVVASVNTGLPFGETLGA 227 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + R + L + I G LSE L ++ R+ ++K + L + K Sbjct: 228 LARELELPPFNRCVDQILGALDRGTPLSEVLQAQAQDARE----ESKRELLELAGKKEVA 283 Query: 132 IIGSLPFCV 140 ++ L + Sbjct: 284 MLFPLVSGL 292 >gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304] gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 651 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 3/142 (2%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L + + +G+P+ A+ +I + P+R E ++ G+SLS+++ R + Sbjct: 437 PIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGISLSDALVRFANRL 496 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + E+S T+++ + GN++E L ++ + ++ + I+ Sbjct: 497 KIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRERMTNMF---MYVIIVYIA 553 Query: 137 PFCVSTLVYFTSPGYMNVLIND 158 F +VY S +++ L Sbjct: 554 FFVFIGIVYIISSTFLSTLAES 575 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 13/184 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61 I R +K P+A+ + + G+ + + + + V E R++ L Sbjct: 130 ISDRKSKINRILPHAIIFMYSLSKGGMSLVQILKALADNHEVYGEVSKEASRILWEVEGL 189 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA---- 117 G L +++ V P F + GG+++ + +R Sbjct: 190 GKDLRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFL 249 Query: 118 KVQALSMEAKASAWIIGSLPFCVS-TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAF 171 + L E +A++ G L + T++ + + P G + + Sbjct: 250 EFLGLMAETYITAFVAGPLFLIIIQTVMSVMGQTNEVAMFSIIYFVIPIGSFMFAMLIKL 309 Query: 172 MLIG 175 + G Sbjct: 310 LTPG 313 >gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 365 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 2/171 (1%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 K D A ++ S+R+G+P+ +A+ I +D EF +++E LG+ L E+I Sbjct: 186 KKVERDILFAARDMIISLRSGMPLFNAIVSISTGYAD-ASKEFAKIVERVQLGMPLEEAI 244 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + SV + G ++ AL + L + ++ + + A A Sbjct: 245 DQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQERYIELRRYGQRLNAIAM 304 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVM 179 +++ + + T L P + V F+ + ++M Sbjct: 305 FYMLFGVILPSMGIAVVTILTTFIALFTVTPILLYAVLVGIGFLQVVFLIM 355 >gi|313140673|ref|ZP_07802866.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313133183|gb|EFR50800.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 252 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 13/173 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPV-RSEFRRVIETQHL-GLSLSESISR 71 + + SVRAG +SD +A + G + P+ S +R++ Q + G S +++ Sbjct: 80 LSGVIAHMSSSVRAGGMISDVLADVDGSGFAGVPLTASRLKRLLMRQRMPGESAAQA--- 136 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 ++ + + ++ + G +L++ L + R + + ++ +A+A Sbjct: 137 --EHVAFE----LAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAA 190 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++G+LP L + VL +G+ L V A +G++ M M+ Sbjct: 191 LLGALPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 243 >gi|330465092|ref|YP_004402835.1| type ii secretion system f domain-containing protein [Verrucosispora maris AB-18-032] gi|328808063|gb|AEB42235.1| type ii secretion system f domain protein [Verrucosispora maris AB-18-032] Length = 301 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 3/154 (1%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + A+ VG + + ++ E R + G ++ + + Sbjct: 130 GQGLQQAIIGTVGTAPEEIQDEVRLLAARLQAGWLARSALLAFADEIGDPVCDQVVAALI 189 Query: 90 VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + G L + L +++ + +++A + + + + + + Sbjct: 190 LHLTDRGERLGDVLGSIASAAAAEVTTRREIEAKRTQPRFAVRFLTGMTLATIAY-GLFN 248 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 Y+ P G +++ + A + + +R M Sbjct: 249 AEYVQP-YGTPFGQLVMALLGAAFVGLLAWVRSM 281 >gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP 32953] gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953] Length = 277 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271 >gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 321 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 158 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 218 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 277 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 278 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 313 >gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 680 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 55/147 (37%), Gaps = 3/147 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 A + L + + G + +++ + SS + EF + H G+SL E+ Sbjct: 459 RAAITGKLSDNLRKLSSANDTGQTLLESIKTVSDTSSGKLADEFEVMHAKVHYGMSLKEA 518 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + ++ +I+ + ++E L ++ ++ +++ + + Sbjct: 519 LVEFNNKYHIPRLARTVKLITKAQEASSQITEVLTTAAQASENQDDIERE---RISRTRM 575 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 II + ++ +++V+ Sbjct: 576 QVAIILMTYVTLLAVMAILKTQFLDVM 602 >gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 264 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +I +RT L P +DI V++G+ + ++++ + + R+I+ Sbjct: 104 INKVIIRRTESVLKSLPFFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIK 163 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G ++ + L NLS+ +R+ + + Sbjct: 164 RAEIN-GLESAIKELHHSSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVT 222 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + L + +V SP + +L Sbjct: 223 EERISKLSAKLT--FPLFLFILIPFVVLVISPSVLEIL 258 >gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15843271|ref|NP_338308.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551] gi|31794828|ref|NP_857321.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121639571|ref|YP_979795.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663520|ref|YP_001285043.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|148824861|ref|YP_001289615.1| transmembrane protein [Mycobacterium tuberculosis F11] gi|167970803|ref|ZP_02553080.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|215424898|ref|ZP_03422817.1| transmembrane protein [Mycobacterium tuberculosis T92] gi|218755437|ref|ZP_03534233.1| transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|219559729|ref|ZP_03538805.1| transmembrane protein [Mycobacterium tuberculosis T17] gi|224992068|ref|YP_002646757.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800699|ref|YP_003033700.1| hypothetical protein TBMG_03698 [Mycobacterium tuberculosis KZN 1435] gi|254233154|ref|ZP_04926480.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C] gi|260184575|ref|ZP_05762049.1| hypothetical protein MtubCP_00757 [Mycobacterium tuberculosis CPHL_A] gi|260198698|ref|ZP_05766189.1| hypothetical protein MtubT4_00792 [Mycobacterium tuberculosis T46] gi|289441088|ref|ZP_06430832.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289445252|ref|ZP_06434996.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289555919|ref|ZP_06445129.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289571895|ref|ZP_06452122.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289748170|ref|ZP_06507548.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289763834|ref|ZP_06523212.1| conserved transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|294992922|ref|ZP_06798613.1| hypothetical protein Mtub2_00045 [Mycobacterium tuberculosis 210] gi|297636334|ref|ZP_06954114.1| hypothetical protein MtubK4_19510 [Mycobacterium tuberculosis KZN 4207] gi|297733327|ref|ZP_06962445.1| hypothetical protein MtubKR_19645 [Mycobacterium tuberculosis KZN R506] gi|306778013|ref|ZP_07416350.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|306786567|ref|ZP_07424889.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|306790932|ref|ZP_07429254.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|306791252|ref|ZP_07429554.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|306795319|ref|ZP_07433621.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|306801287|ref|ZP_07437955.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008] gi|306805499|ref|ZP_07442167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|306974130|ref|ZP_07486791.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|313660659|ref|ZP_07817539.1| hypothetical protein MtubKV_19645 [Mycobacterium tuberculosis KZN V2475] gi|2960082|emb|CAA17980.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13883629|gb|AAK48122.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551] gi|31620425|emb|CAD95868.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] gi|121495219|emb|CAL73705.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602947|gb|EAY61222.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C] gi|148507672|gb|ABQ75481.1| putative conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|148723388|gb|ABR08013.1| conserved transmembrane protein [Mycobacterium tuberculosis F11] gi|224775183|dbj|BAH27989.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253322202|gb|ACT26805.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435] gi|289414007|gb|EFD11247.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289418210|gb|EFD15411.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289440551|gb|EFD23044.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289545649|gb|EFD49297.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289688757|gb|EFD56186.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289711340|gb|EFD75356.1| conserved transmembrane protein [Mycobacterium tuberculosis GM 1503] gi|308213542|gb|EFO72941.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308328819|gb|EFP17670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308332686|gb|EFP21537.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|308340172|gb|EFP29023.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|308344146|gb|EFP32997.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|308347947|gb|EFP36798.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|308351901|gb|EFP40752.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008] gi|308356402|gb|EFP45253.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|323717517|gb|EGB26719.1| membrane protein [Mycobacterium tuberculosis CDC1551A] gi|326905493|gb|EGE52426.1| conserved membrane protein [Mycobacterium tuberculosis W-148] gi|328460428|gb|AEB05851.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207] Length = 266 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 96 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 156 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262 >gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638] Length = 272 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K++I R L P +DI V++G+ + +++ + + +V Sbjct: 115 VKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVTR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + E L LS+ +R+ + + Sbjct: 175 RAEIN-GLESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLVT 233 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + I L + ++ SP + +L Sbjct: 234 EEKISKLTAKLT--IPLFLFILIPFIILVISPSVLELL 269 >gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184] gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184] Length = 330 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAASRRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 QFAAGRTREQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 180 VDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSM 239 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ + ++ + GG + E L LR+ + + + + K + Sbjct: 240 QRLSSGFDNEDLRAIARLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMT 299 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + L+ PG++ V+ Sbjct: 300 GVMVLTLLPAL--LIVTAGPGFLAVM 323 >gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP 31758] Length = 277 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271 >gi|119025148|ref|YP_908993.1| hypothetical protein BAD_0130 [Bifidobacterium adolescentis ATCC 15703] gi|118764732|dbj|BAF38911.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 256 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 7/160 (4%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 SVR+G + A + P E R + + S+ +++ Sbjct: 98 SVRSGATLVQAFEEL---QGAPFAVPELTRF--RIDMAVRSRCSLQEQHKHVDQLGAE-L 151 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++ QLG +S L ++ L+ R+ + +A+ ++ +LP L Sbjct: 152 HAACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLG 211 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ D +G M LG A +G +R ++ Sbjct: 212 ECMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 251 >gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10] gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str. 91001] gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola] gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1] gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92] gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10] gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516] gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua] gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92] gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F] gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola] gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Nepal516] gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. India 195] gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis Pestoides A] gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038] gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003] gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 277 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271 >gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 332 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM 2782] Length = 296 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58 + + +KKR + +FP+ ++ + + AGL +S A I S E ++ + Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLDSKKVSAFHKEVKKTVAQ 196 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G+S +E+ + + E+S ++I S+ GG +L L S + + Sbjct: 197 LKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQNSKKGGYDLVMTLKLQSNESWEIRKNAV 256 Query: 118 KVQALSMEAKA 128 + K Sbjct: 257 RRLGEEASTKL 267 >gi|239981063|ref|ZP_04703587.1| hypothetical protein SalbJ_16622 [Streptomyces albus J1074] gi|291452929|ref|ZP_06592319.1| integral membrane protein [Streptomyces albus J1074] gi|291355878|gb|EFE82780.1| integral membrane protein [Streptomyces albus J1074] Length = 285 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + VR+G A+ VG++ +E V G ++ ++ + +S Sbjct: 119 LAQEVRSGRQPVAALLHAVGEARGLGGAE-AGVTAAARFGGDVAGALREAAGAPGAEGLS 177 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ + L+ LR ++ A + A A+++ ++ +LP Sbjct: 178 GLAACWEVAVDRGAGLASGVERLAAALRAERDQAADLAAQLAGARSTVLMLAALPLLGLV 237 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + + VL++ P G L + +A G+ ++ Sbjct: 238 LGWAMGADPLRVLLHTPAGLACLLMGSALESAGLWWALGIVR 279 >gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641] gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641] Length = 306 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLS 66 R + AL I+ +R+GL A+ + SE GL + + Sbjct: 157 RKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASFPTMLASELSGAHMAWMTGLTTRT 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + + I + G L++AL L+ R + + + Sbjct: 217 EALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKAPV 276 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + + +V Sbjct: 277 KMMIPVGTLILPSMLLMVL 295 >gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C] gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C] Length = 305 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 65/178 (36%), Gaps = 4/178 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R + + L+ + AG+ + + + P+ + R + E G+ Sbjct: 105 AEQRIERL-EAIGQWLNGLAGIHTAGISLVQTIRASARNAPAPIAANVRALDERLRSGMD 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + + V + + S + +G LS AL L+ + + +++ Sbjct: 164 SKQAFALFADELGDGVVDHVALLFQSHAANMGPGLSTALEALAVTIHQQAADARDIESDR 223 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + S+ I+ + C+ + + + + P G + L + + +R Sbjct: 224 AKIRKSSRIVSIV-ICIVFVGCMLNEAW-SAWYQSPAGQLALAILGGLFAWTLSWLRR 279 >gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380] Length = 265 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +K+++ KRT L P +DI V++G+ + A+ + + + ++ + Sbjct: 105 IKNILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKMSK 164 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + + E+ F + + G ++ + LA LS+ +R+ + + + Sbjct: 165 RAEIN-GLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVS 223 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + K + + + + +V SP + +L + Sbjct: 224 EEKVSKLSTKLTFPLFIFI--LIPFIVLVISPSVLELLTH 261 >gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 646 Score = 59.3 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 53/113 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ P+ L+ + R GL ++ A+ V+V + + E RR+ G S+ Sbjct: 420 RRKLKSIESSIPDFLERLSGINRVGLTIAGAINVLVKANLGLISYEIRRIKRDLEWGASV 479 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 ++++ R + ++ T+I+ S++ G++ E L S R + +K + Sbjct: 480 NDALIRFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKE 532 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL-GLS 64 RT K NA+ + R G + D + + V EFR+V+ G Sbjct: 124 RTTKINLSLHNAVSYMFAMRRGGAEMLDIFRSMSENAVVYGEVAIEFRQVLRDAEYFGHD 183 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + P +++ F + + GGN+SE L R+ ++ + ++ Sbjct: 184 LISALENLSMTTPSEKLKDFLEDLVSVTGSGGNISEYLEGRVRMYQEEARFEQLQFLSTL 243 Query: 125 EAKASAWIIGSL--PFCVSTLVYFT 147 + A A++ + P + ++ Sbjct: 244 QIVAEAYVTVFVAGPLFLVIIMVVM 268 >gi|254381326|ref|ZP_04996691.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340236|gb|EDX21202.1| integral membrane protein [Streptomyces sp. Mg1] Length = 305 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 68/175 (38%), Gaps = 3/175 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L+ + + +R G + +A+ + + + E +++ H+G ++++ Sbjct: 101 LEALGDWTQRLANVLRLGRGLDEALQISRKGCPEDIAGEVGDLVDRLHVGWRPTDALRHF 160 Query: 73 VRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L++AL +L+ + + + ++A + + + Sbjct: 161 GDALDDVTADKVVAALVLSAADRGPGLAQALDDLAESVHEEVARRRAIEADRAKPRTTMR 220 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + V+ + P Y +L +AA F+ + + +MR + + Sbjct: 221 WMTIITLGVAGAGFLI-PSYTAPYGTLLGQLVLGVLAAGFVGV-LALMRQIADVK 273 >gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110] Length = 319 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + R + + P +D++ GL + ++ ++ S + E Sbjct: 156 LGRIAAGRRERIARELPLFVDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANR 215 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + S+ R+ +++ +++ + GG + E L LR+R+ + Sbjct: 216 QYSQGRTREHSLHRLATLHGNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEM 275 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + + K + ++ +L + ++ PG++ + Sbjct: 276 KERIGKITVKMTGVMVSTLLPAL--VIVTAGPGFIAIF 311 >gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 284 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 12/175 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ A +I AG P+ ++A +S P++ R V Sbjct: 111 LNRVYKRARLLLKRQLRQARLLIALLTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIG 170 Query: 61 LGLS----------LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + E+ M + L E + F+ +++ ++ L + + S + Sbjct: 171 ASEDAKDAGMRVQTVVEAFMGMAERLHLPEATQFAQLLTQSARYNTPLVDMM-FTSLDIE 229 Query: 111 DR-KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +R ++ +A+++ + +K S L V ++ Y ++ + G L Sbjct: 230 ERIRDTEAELRYNNAISKISYISTLGLGIPVFGYLFLAVFSYALQILGNGFGISL 284 >gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2] gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 298 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++V S+ +G V +A+ ++ V F +++ LS Sbjct: 81 KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + +I + GG L++ L L++ L D +N+K+++ +++ Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANG 200 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 201 LAVGLIILCGVIPATAGLI 219 >gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004] Length = 193 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 33 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 92 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 93 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 151 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 152 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 187 >gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 627 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 65/156 (41%), Gaps = 5/156 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + +R K + P+ L + +GL + A+ ++ + + SE ++ + Sbjct: 404 LVEIRNRRVRKIEEHIPDFLKQLASLNESGLNIVSAIRILSTSNLGVLTSEIIKIRKDLE 463 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LS+++ R R + V+ ++++ + G + +AL + + +K +V+ Sbjct: 464 WGMLLSDALKRFERRIGSMTVTKVTSILLRAMEAAGTIKDALFTAATDAQLYLELKKRVR 523 Query: 121 ALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVL 155 ++ + F V ++ S +M + Sbjct: 524 NE----MFVYIVVIYMTFGVFLFTIFVLSNNFMQIF 555 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 6/181 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64 R + FP+ +++++ R G+ V + VI + S V EF ++ + Sbjct: 124 RRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEVSVTGEVGKEFAVIVNGVEMFHKD 183 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + P Q + F + G LSE L S+ L D + + S+ Sbjct: 184 LISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQDLFLNSL 243 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A ++ + + L+ F M +L + M L + + G+ + L+ + Sbjct: 244 GILAEVYVAALVVAPLFMLIIFV---VMGMLGSTTMHLMQLLIYLYMPIGGLAFIWLLSS 300 Query: 185 F 185 Sbjct: 301 M 301 >gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 317 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 5/144 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71 + P +D++ G+ + + VI + E + + G + S R Sbjct: 168 ELPLFVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGR 227 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M ++ ++++ + GG + E L LR+++ K K + K +A Sbjct: 228 MSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAV 287 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + ++ PG++ V+ Sbjct: 288 MVVTLLPAL--IIITAGPGFLAVI 309 >gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB] Length = 298 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++V S+ +G + +A+ ++ V S F +++ LS Sbjct: 81 KMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ + + + S +I + GG L+ L L++ L D +N+K+++ +++ Sbjct: 141 DSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISVTGNG 200 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 201 LAVGLVILCGVIPATAGLI 219 >gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 332 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57 ++ R + P +D++ GL + ++ V+ + E Sbjct: 169 VRRRATARRQSLGAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + Q + K + +I +L + L+ PG M VL Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324 >gi|327334808|gb|EGE76519.1| hypothetical protein HMPREF9344_00673 [Propionibacterium acnes HL097PA1] Length = 256 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRSLAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus metallidurans CH34] gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus metallidurans CH34] Length = 369 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ +IV + + E +R + G S +++ Sbjct: 217 DELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTLL 276 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ + +++ T+++ + GG + E L L+ + + K + + K + Sbjct: 277 RIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMTG 336 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ SL + L+ PG++ V+ Sbjct: 337 VMVVSLLPVL--LILTAGPGFLGVM 359 >gi|310830507|ref|YP_003965608.1| hypothetical protein PPSC2_p0147 [Paenibacillus polymyxa SC2] gi|309249974|gb|ADO59540.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 313 Score = 58.9 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 68/184 (36%), Gaps = 5/184 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL 61 +R + + ++++ S A+ + + +P+ +E R+ + +L Sbjct: 124 RKNRRVVMMEKQIGSFMHMVIKRYETTREFSKALELSTIEFKGEEPLYTELRKTVLDINL 183 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL--SEALANLSRILRDRKNMKAKV 119 G +++S+ + R + ++ FS + S +G + + L + + + K Sbjct: 184 GKPVTDSMDALARRTGNKYLARFSDYYKIASSIGTDEIRKKLLEQAYKQFEENRVNKQTT 243 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMV 178 + A+I+ + T+ Y++ + G + + + A FM + Sbjct: 244 KKELATVVREAYIMLGSIPMFAIYQVMTNDKYIDFMTETFLGKVGSVIIIAVFMGAVWFI 303 Query: 179 MRLM 182 + Sbjct: 304 NNKI 307 >gi|328759517|gb|EGF73126.1| membrane spanning protein [Propionibacterium acnes HL099PA1] Length = 288 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 5/173 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADKLDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + + + ++ L P G +L+ VA + ++ M M Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPLATPP-GQILVAVAVVMYVTALVQMYRMAR 275 >gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 270 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A P D++ + AG +A + + PV R LG E+ Sbjct: 123 ALIARQLPITADLLASCLSAGAGPREAAEAVGESVAGPVGERLARTAAVILLGGEPDEAW 182 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R L + + ++ S G +E ++ L+ +R + A +A + Sbjct: 183 RRFGE---LPGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLIT 239 Query: 130 AWI-IGSLPFCVSTLV 144 A + + LP ++ V Sbjct: 240 APVGLCFLPAFLAVGV 255 >gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens Pf-5] gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens Pf-5] Length = 294 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 63/154 (40%), Gaps = 5/154 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + + K+R + + ++ +G+ V A+ V+ ++ + E R ++ Sbjct: 134 LAYAAKRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILA 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L +++ + + E + ++ GG ++L L ++L DR+ + Sbjct: 194 RVDSGLELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + M AK S ++ L + L+ PG+ Sbjct: 254 QEYISKMSAKMSVVMMLFL--FPALLIVLAGPGF 285 >gi|256396008|ref|YP_003117572.1| integral membrane protein [Catenulispora acidiphila DSM 44928] gi|256362234|gb|ACU75731.1| putative integral membrane protein [Catenulispora acidiphila DSM 44928] Length = 290 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/165 (10%), Positives = 58/165 (35%), Gaps = 2/165 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +++ + + + AV + + + + ++++ + + Sbjct: 111 EMLRDVLSSAAGLEQAVLASTTVAPEAIAGPLAALGSDLRARRPFADAMRALAAQLGDAT 170 Query: 81 VSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + NL+E L L+ R + ++ +V A + + S I + Sbjct: 171 ADQVIVSLIHAQKFQAKNLAELLGELAAAARAQVSLAVRVHAERAKHRTSQRAITVIFTL 230 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ + P ++ + G M++ V A + +++++ Sbjct: 231 MALGLCVFYPKFLRP-YDTVGGQMVMAVVVAMFAGALCWIQIILR 274 >gi|289424514|ref|ZP_06426297.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|289155211|gb|EFD03893.1| conserved hypothetical protein [Propionibacterium acnes SK187] gi|313765313|gb|EFS36677.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1] gi|313793204|gb|EFS41271.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1] gi|313802707|gb|EFS43925.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2] gi|313814295|gb|EFS52009.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1] gi|313815408|gb|EFS53122.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1] gi|313828806|gb|EFS66520.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2] gi|314916035|gb|EFS79866.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4] gi|314917187|gb|EFS81018.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1] gi|314921686|gb|EFS85517.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3] gi|314930991|gb|EFS94822.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] gi|314955078|gb|EFS99484.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] gi|314959118|gb|EFT03220.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1] gi|314964616|gb|EFT08716.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1] gi|314969716|gb|EFT13814.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1] gi|315078729|gb|EFT50755.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2] gi|315099517|gb|EFT71493.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2] gi|315101976|gb|EFT73952.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1] gi|315110101|gb|EFT82077.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2] gi|327454502|gb|EGF01157.1| hypothetical protein HMPREF9581_00677 [Propionibacterium acnes HL087PA3] gi|327456571|gb|EGF03226.1| hypothetical protein HMPREF9586_00950 [Propionibacterium acnes HL083PA2] gi|327457153|gb|EGF03808.1| hypothetical protein HMPREF9584_00349 [Propionibacterium acnes HL092PA1] gi|328756266|gb|EGF69882.1| hypothetical protein HMPREF9579_00755 [Propionibacterium acnes HL087PA1] gi|328757047|gb|EGF70663.1| hypothetical protein HMPREF9588_01290 [Propionibacterium acnes HL025PA2] Length = 256 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|154486514|ref|ZP_02027921.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis L2-32] gi|154084377|gb|EDN83422.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis L2-32] Length = 260 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 5/159 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 SVR+G + A + Q + E R + + S+ +++ Sbjct: 102 SVRSGATLVQAFEEL--QGAPFAVPELTRF--RIDMAVRSRCSLQEQHKHVDQLGAE-LH 156 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ QLG +S L ++ L+ R+ + +A+ ++ +LP L Sbjct: 157 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 216 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ D +G M LG A +G +R ++ Sbjct: 217 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 255 >gi|50841724|ref|YP_054951.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202] gi|50839326|gb|AAT81993.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202] Length = 256 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus assembly [Yersinia enterocolitica subsp. palearctica Y11] Length = 274 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+++ KRT L P +DI V++G+ + ++++ + + +V Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + E L LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + I L + +V SP + ++ Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 271 >gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] Length = 267 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 4/151 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL--SL 65 RT L P +DI V++G+ + ++++ + +++ G L Sbjct: 114 RTESILKSLPFFIDITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMTKRGEINGL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +I + + +E+ F + + G + + L LS+ +R+ + + + + + Sbjct: 174 ESAIKELHQCTTAKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEERISKLS 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK + I L + +V SP + ++ Sbjct: 234 AKLT--IPLFLFILIPFIVLVISPSILEIIT 262 >gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC 13129] gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 248 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 4/174 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESIS 70 + +AL II +R GL DA+A + + + P+ + G S ++ ++ Sbjct: 74 QEALSSALGIIAGDLRCGLGTWDALARVAQEPTTHAPLAAACAAAARRARAGGSAADVLA 133 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + V + G +++ + L + DR + + +A A+A+A Sbjct: 134 DYSH--SIAGLQRVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAALQGAQATA 191 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP + + L+N+ G LL V A G++ + +I Sbjct: 192 IVLSLLPLFGLGMGIGLGAPVLAFLLNNAIGQTLLIVGTALQCAGLLWSQALIK 245 >gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 274 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+++ +RT L P +DI V++G+ + ++++ + + +V + Sbjct: 117 VKNIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTK 176 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + E L LS+ +R+ + + Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + I L + +V SPG + ++ Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFVVLVVSPGILELI 271 >gi|119715778|ref|YP_922743.1| integral membrane protein [Nocardioides sp. JS614] gi|119536439|gb|ABL81056.1| integral membrane protein [Nocardioides sp. JS614] Length = 299 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + ++ + + + A + A+ VG + +R+ R + + Sbjct: 88 RAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRV 147 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E+++R + +S+ Q G L L +L+ R M+ KV+ Sbjct: 148 PLPEALARFADDVDDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHE 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A I L + G++ + P G ++L + AA + + MR + Sbjct: 208 RRALRRQAQRIAFAVLGFVALQAVFARGWVEP-YSTPLGQLVLAILAAIFVGSFVRMRSL 266 Query: 183 INFDV 187 N +V Sbjct: 267 SNGEV 271 >gi|215413583|ref|ZP_03422251.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A] gi|298496925|gb|EFI32219.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A] Length = 266 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 96 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 156 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWPDRITD 262 >gi|295129801|ref|YP_003580464.1| hypothetical protein HMPREF0675_3278 [Propionibacterium acnes SK137] gi|291376757|gb|ADE00612.1| conserved hypothetical protein [Propionibacterium acnes SK137] gi|313772773|gb|EFS38739.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1] gi|313810913|gb|EFS48627.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1] gi|313831678|gb|EFS69392.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] gi|313834347|gb|EFS72061.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1] gi|313840369|gb|EFS78083.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1] gi|314974781|gb|EFT18876.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314977019|gb|EFT21114.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] gi|314985440|gb|EFT29532.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1] gi|315082166|gb|EFT54142.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] gi|315097274|gb|EFT69250.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|327331301|gb|EGE73040.1| hypothetical protein HMPREF9338_00673 [Propionibacterium acnes HL096PA2] gi|327447320|gb|EGE93974.1| hypothetical protein HMPREF9570_01603 [Propionibacterium acnes HL043PA1] gi|327450234|gb|EGE96888.1| hypothetical protein HMPREF9571_00214 [Propionibacterium acnes HL043PA2] gi|328761170|gb|EGF74713.1| hypothetical protein HMPREF9343_01124 [Propionibacterium acnes HL099PA1] Length = 256 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + Q +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174] gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174] Length = 289 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + R + L D P L + V +G+ + DA + E + Sbjct: 137 LQDKLTARRQEILMDLPQVLSKLTLLVNSGMVLRDAWKRTAITGERALYKEMQNTSLEID 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G+ +++ ++EV F+++I Q G L+ L ++S + + K + K Sbjct: 197 NGIMEADAYRNFADRCSVKEVRKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQ 256 Query: 120 QALSMEAKA 128 + ++ Sbjct: 257 KGEKANSRL 265 >gi|311896986|dbj|BAJ29394.1| hypothetical protein KSE_35900 [Kitasatospora setae KM-6054] Length = 360 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 66/171 (38%), Gaps = 4/171 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMV 73 + + +R G A+ ++ +++ + +E + G L ++ + Sbjct: 145 DLCTGLAAELRGGATPEQAMHTVLARAAPEWGRRLGAEPAARLAAGRYGADLPAALRLVA 204 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + V ++ G L++ L ++ LR + + ++ + + ++ Sbjct: 205 ELPGGEGAAAMAACWRVSTESGSGLADGLEQVAEALRAERALSEEIAGELAGPRTTVAVL 264 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP L ++VL++ P G + L V A ++GI+ ++ Sbjct: 265 AVLPAVGLGLGAALGAHPVHVLLHTPAGLLGLLVGAVLEVVGIVWTARIVR 315 >gi|238062113|ref|ZP_04606822.1| type II secretion system protein [Micromonospora sp. ATCC 39149] gi|237883924|gb|EEP72752.1| type II secretion system protein [Micromonospora sp. ATCC 39149] Length = 301 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 50/157 (31%), Gaps = 5/157 (3%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 G + A+ + + + + E R + G ++ + Sbjct: 128 STGQGLQQAILGTLATAPEEIEEEVRLLAARLQAGWLAKSALLAFADEIGDPVCDQVVAA 187 Query: 88 ISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + G L + L +++ + +++A + + + + + Sbjct: 188 LILHLSDRGERLGDVLGSIAGAAAAEVATRREIEAKRTQPRFAVRFLTGMTLLTLAY-GL 246 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIM-VMRLM 182 + Y+ P G +++ V +G++ +R M Sbjct: 247 VNTDYIRP-YGTPFGQLVMFV-LGSAFVGLLAWVRAM 281 >gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1] gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1] Length = 288 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 3/186 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R +P+ +D +V +VR+GL + D++ + RS F Sbjct: 97 ISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSLMTLSQTGPLVTRSAFAAFAARYR 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + S ++ + + + + ++GG L+ L +LS LR +++++ Sbjct: 157 ATGNFSIAVDELKVALADPVADRILETLRMSREVGGSELTNVLRSLSVYLRQEAAIRSEI 216 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A +A + + P+ V L+ T P N G L+ L+ +M Sbjct: 217 EARQSWVMNAARLGLAAPWVVLFLLT-TRPEA-AAAYNSASGVALIVAGLILSLVAYRIM 274 Query: 180 RLMINF 185 + Sbjct: 275 AGIGRL 280 >gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 264 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 5/149 (3%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66 +D+ P +D++ GL + ++ V+ + SE G + Sbjct: 110 QAVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTRE 169 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +S+ R+ +++ ++ + GG + E L LR+ + + + + Sbjct: 170 QSLQRLASGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTV 229 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + +I +L + L+ PG ++V+ Sbjct: 230 KMTGVMIVTLLPAL--LIVTAGPGMISVM 256 >gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972] gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972] Length = 296 Score = 58.6 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 ++ +R ++ A+ ++ + GL + + ++SD + + +I Sbjct: 136 IRMQANRRAKIIDEEMLTAVHMMAILWQVGLSLERLLKTYHQEASDLTPEMNKDIALIIA 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M +++S S+ GG L ++ +L+ +L +RK + Sbjct: 196 RIDAGQNREWVFRDMATLTLSTGFQDLLSMLSQGSETGGGLKKSFQSLADLLYERKRVAL 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + M K S ++ + + + P + ++ Sbjct: 256 QEKVTKMSGKISVTMMALM--FPALFIILGGPAALALM 291 >gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA1] gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA2] gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA1] gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA1] gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA1] gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA2] gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes HL086PA1] gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA4] gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA1] gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA3] gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA1] gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA2] gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA1] gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA3] gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA2] gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA2] gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA1] gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA2] gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL096PA2] gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL096PA3] gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA2] gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA1] gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA2] gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL099PA1] Length = 147 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 8 QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67 Query: 75 ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P Q+ +S G +SE L+ + L+ K + +A A Sbjct: 68 VEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIG 120 Query: 131 WIIGS-LPFCVSTLVYFTSPGYM 152 ++ LP + V G + Sbjct: 121 PLVCCHLPAFLLVGVVPIIAGMV 143 >gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 184 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYM 76 + Sbjct: 176 AARDFAELY 184 >gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 285 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 3/175 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L+ + +R G+ + A+ + D + + + + LG E++ Sbjct: 73 LEALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAF 132 Query: 73 VRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L++AL +L+ +R+ K ++A + + + Sbjct: 133 ADELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVR 192 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + + F P Y + G ++LG A + + +MR + F Sbjct: 193 WMTFI-TVGVVVAGFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 245 >gi|224283518|ref|ZP_03646840.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171] gi|310288221|ref|YP_003939480.1| conserved hypothetical membrane spanning protein [Bifidobacterium bifidum S17] gi|311065088|ref|YP_003971814.1| hypothetical protein BBPR_1760 [Bifidobacterium bifidum PRL2010] gi|309252158|gb|ADO53906.1| conserved hypothetical membrane spanning protein [Bifidobacterium bifidum S17] gi|310867408|gb|ADP36777.1| Conserved hypothetical protein, TadB-like protein [Bifidobacterium bifidum PRL2010] Length = 230 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 13/173 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPV-RSEFRRVIETQHL-GLSLSESISR 71 + + SVRAG +SD +A + G + P+ S +R++ Q + G S +++ Sbjct: 58 LSGVIAHMSSSVRAGGMISDVLADVDGSGFAGVPLTASRLKRLLMRQRMPGESAAQA--- 114 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 ++ + + ++ + G +L++ L + R + + ++ +A+A Sbjct: 115 --EHVAFE----LAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAA 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++G+LP L + VL +G+ L V A +G++ M M+ Sbjct: 169 LLGALPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 221 >gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 617 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 4/120 (3%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 +G+P+ A++++ + P+R E R++ GL LS + R + + +V+ T+ Sbjct: 426 ESGVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSRAFVRFANRIRVFDVTRVVTM 485 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 ++ + GNL+E L ++ + +K + + + II + F V + + Sbjct: 486 LNEAMKTTGNLTEVLVISAKEASRSELIKRERY----YSMMTYTIIIYVAFFVFIGITYI 541 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 13/178 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLG-LS 64 R +K +A+ + G + + V E R+++ G + Sbjct: 125 RKSKIDRMLHHAVAFMHALSIGGTDIYRIFKTLAEHQDVYGEVSREVSRIVKDVEYGGMD 184 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQ 120 L +++ V P + F + GG++ L R + ++ Sbjct: 185 LRSALTNAVELSPSENYKEFLHGLITVIDSGGDIRSYLEERVEYFFEKARQSQKAFLELL 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAAAFM 172 + E+ +A + L + +V Y + + P G L M Sbjct: 245 GMMAESYVTALVAAPLFLMIIEIVMLLMGEGNEYVLYAVIYLFIPIGSALFAGIVKMM 302 >gi|260202856|ref|ZP_05770347.1| hypothetical protein MtubK8_00867 [Mycobacterium tuberculosis K85] gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacterium tuberculosis K85] gi|289536735|gb|EFD41313.1| transmembrane protein [Mycobacterium tuberculosis K85] Length = 266 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 96 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 156 PAYWERLAVWWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262 >gi|329939412|ref|ZP_08288748.1| integral membrane protein [Streptomyces griseoaurantiacus M045] gi|329301641|gb|EGG45535.1| integral membrane protein [Streptomyces griseoaurantiacus M045] Length = 316 Score = 58.2 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG +A+ S + V+ G + +++ R + + Sbjct: 150 VLAGEVRAGRQPGEALRHAAQDSGG-LGGARAAVLAAARFGGDVPGALTEAARGPGAEGL 208 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L LR ++ +A ++A A+++A ++ LP Sbjct: 209 LGLAACWRVAVDRGAGLAAGLDRLEAALRAERDQRADLRAQLAGARSTAVMLAGLPVLGL 268 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++V+++ G M L A G+ ++ Sbjct: 269 LLGTALGADPLHVVLHTGPGLMCLLAGAVLEAAGLWWALRIVR 311 >gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394864|gb|AAS02734.1| hypothetical protein MAP_0417 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 267 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ALD++V +RAG A V G+++ PV R V LG ++ ++ R Sbjct: 97 ALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAASRSSAR 156 Query: 79 QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E + + G ++ + R + +R+ A+V + A+A+A I+ +LP Sbjct: 157 PEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALP 216 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V A G++ +++ Sbjct: 217 VLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263 >gi|160931310|ref|ZP_02078710.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753] gi|156869694|gb|EDO63066.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753] Length = 288 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 5/173 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR + A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQIAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I + + + ++ L P G +L+ VA +I ++ M M Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPLATPP-GQVLVAVAIVMYVIALVQMYRMAR 275 >gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Mycobacterium tuberculosis EAS054] gi|289696370|gb|EFD63799.1| conserved membrane protein [Mycobacterium tuberculosis EAS054] Length = 221 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 1/165 (0%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 53 ELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPA 112 Query: 81 V-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 113 YWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLL 172 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 173 GVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 217 >gi|289424230|ref|ZP_06426013.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289154927|gb|EFD03609.1| type II secretion system F domain protein [Propionibacterium acnes SK187] Length = 291 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 229 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 268 >gi|295129571|ref|YP_003580234.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|291376277|gb|ADE00132.1| type II secretion system F domain protein [Propionibacterium acnes SK137] Length = 291 Score = 58.2 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 229 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 268 >gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 252 Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 92 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 151 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 152 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 211 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG+M + Sbjct: 212 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 246 >gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6] gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6] Length = 298 Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++V S+ +G V +A+ ++ V + F +V+ LS Sbjct: 81 KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + +I + GG L++ L L++ L D +N+K+++ +++ Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANG 200 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 201 LAVGLIILCGVIPATAGLI 219 >gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. D5] Length = 410 Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 12/162 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFR 53 K ++ R + D+P + + AG+ V A + + E Sbjct: 250 KQVLADRKKQLAADYPQLISQFTLFLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMS 309 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDR 112 + G+S E R L F ++S + GG L+E L + + Sbjct: 310 YTMHEIQGGVSEGECYERFGSRCGLPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFED 369 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A+ K + L + +V P + ++ Sbjct: 370 RKKQARKLGEEAGTKLLGPMFLMLAVVLIIIVV---PAFFSI 408 >gi|126437755|ref|YP_001073446.1| type II secretion system protein [Mycobacterium sp. JLS] gi|126237555|gb|ABO00956.1| type II secretion system protein [Mycobacterium sp. JLS] Length = 262 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + +AL+++V +R G A G+ V R V LG ++ + Sbjct: 87 ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVADSLRAVAARARLGADVAAGLHDTA 146 Query: 74 RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R L + + G +++ + R + +R+ ++V A A+A+A + Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRVSAGMAGARATAAV 206 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + LP L +L+ G LL + G++ + Sbjct: 207 LAGLPVLGIGLGQMIGADPGRLLLGGGAGGWLLLIGVTLSCAGLLWSDRIT 257 >gi|313817685|gb|EFS55399.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] gi|314961705|gb|EFT05806.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA2] gi|315086655|gb|EFT58631.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA3] Length = 293 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|313792523|gb|EFS40609.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA1] gi|313803524|gb|EFS44706.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA2] gi|313806902|gb|EFS45400.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA2] gi|313814177|gb|EFS51891.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA1] gi|313821488|gb|EFS59202.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA1] gi|313824567|gb|EFS62281.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA2] gi|313826238|gb|EFS63952.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA1] gi|313839669|gb|EFS77383.1| type II secretion system F domain protein [Propionibacterium acnes HL086PA1] gi|314926290|gb|EFS90121.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA3] gi|314964235|gb|EFT08335.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA1] gi|314980211|gb|EFT24305.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|314987067|gb|EFT31159.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA2] gi|314990440|gb|EFT34531.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA3] gi|315078858|gb|EFT50876.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA2] gi|315083127|gb|EFT55103.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA2] gi|315088059|gb|EFT60035.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|327333718|gb|EGE75435.1| membrane spanning protein [Propionibacterium acnes HL096PA3] gi|327444423|gb|EGE91077.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA2] gi|327457369|gb|EGF04024.1| type II secretion system F domain protein [Propionibacterium acnes HL092PA1] Length = 293 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|313771160|gb|EFS37126.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313811814|gb|EFS49528.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA1] gi|313832350|gb|EFS70064.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|313832809|gb|EFS70523.1| type II secretion system F domain protein [Propionibacterium acnes HL056PA1] gi|314975242|gb|EFT19337.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] gi|314977657|gb|EFT21752.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] gi|314985158|gb|EFT29250.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA1] gi|315081601|gb|EFT53577.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] gi|315097118|gb|EFT69094.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|327332545|gb|EGE74280.1| membrane spanning protein [Propionibacterium acnes HL096PA2] gi|327446676|gb|EGE93330.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] gi|327448881|gb|EGE95535.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|328759744|gb|EGF73340.1| membrane spanning protein [Propionibacterium acnes HL099PA1] Length = 293 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|332674441|gb|AEE71257.1| type II secretion system protein [Propionibacterium acnes 266] Length = 273 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 91 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 150 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 151 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 210 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 211 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 250 >gi|328757930|gb|EGF71546.1| type II secretion system F domain protein [Propionibacterium acnes HL020PA1] Length = 293 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|314922727|gb|EFS86558.1| type II secretion system F domain protein [Propionibacterium acnes HL001PA1] gi|314965811|gb|EFT09910.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA2] gi|315094494|gb|EFT66470.1| type II secretion system F domain protein [Propionibacterium acnes HL060PA1] gi|315105215|gb|EFT77191.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA2] gi|327328988|gb|EGE70748.1| membrane spanning protein [Propionibacterium acnes HL103PA1] Length = 293 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 679 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + + G+ + ++V V+ S + EF + + G SL Sbjct: 456 RSRKTIIGSLSENLRKLASANDTGMTLLESVQVVSTTSGGKLSEEFEIMHAKVNYGTSLK 515 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + ++ +IS + + L+ ++ ++ ++ + Sbjct: 516 DALREFNNKYHVPRLARTVKLISEAQEASSQIQNVLSTAAQASENQDDIDRE---RIART 572 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II + ++ +++V+ Sbjct: 573 RMQVVIILMTYLTLLGVMALLKTQFLDVM 601 >gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 336 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 173 LRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ GG + E L LR+ + Sbjct: 233 QFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQFGDRLREARRAML 292 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + + + K + +I +L + + Sbjct: 293 RERIGRLAVKMTGVMIVTLLPALMIV 318 >gi|282853084|ref|ZP_06262421.1| type II secretion system F domain protein [Propionibacterium acnes J139] gi|282582537|gb|EFB87917.1| type II secretion system F domain protein [Propionibacterium acnes J139] Length = 291 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 229 VVLAGALILGREYLIP-YRTGVGQLLLCCYAGLYLAGLIAL 268 >gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z] gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z] Length = 625 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 57/154 (37%), Gaps = 7/154 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ + V+ + ++ A+ + + ++ + R + G LS Sbjct: 405 RRIDKVEGALPDFCRQLSSLVKYNMTLTHAIELTAQEGKSYIQEDIRILSRDLLWGEKLS 464 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R M V ++S +LS + + R+++K + + + Sbjct: 465 SALKRFADRMKNLSVDRLVILLSQTEHFTNDLSLTIDLQYHEAKARESLKRERK-----S 519 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPG-YMNVLIND 158 +++ F V V ++N+++ + Sbjct: 520 DMGVYVVIVFMAFAVFVFVQVIMSEVFLNIMMEN 553 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 12/189 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL- 61 ++ R + + G + +V I EFR+V+ Sbjct: 100 MRSRKRFIEASMYEMVSFMYALHHCGATLYASVHSIAKYADFYGDAAKEFRQVVSDMDFC 159 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +I R+ P ++ FF + +S + GN L + ++ + + Sbjct: 160 GYDQFTAIQRLADTTPSDKLRFFLSELSSTYRSIGNAEVFLHGKLQEMQKESEVAQRSYL 219 Query: 122 LSMEAKASAWI--------IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 S+ A A +I + V L+ + P + +++ + Sbjct: 220 SSLGAIAEMYITLFVAGPLFVVIVIMVIGLISGSDPMILAIVVYLMLPIGTVIFLLLLDA 279 Query: 174 IG-IMVMRL 181 +G +++ Sbjct: 280 LGQTYIIKR 288 >gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 289 Score = 57.8 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 71/181 (39%), Gaps = 4/181 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K R A+ + + + AG+ + A+ + + + + R + + S Sbjct: 96 AKARIARL-EALEEWTRSLSGVLVAGVGLEQALVSTLRSAPTVLEPQLRLLTARLNARWS 154 Query: 65 LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + + + + + G L+ LA+L+ + + +++A Sbjct: 155 TEAALRAFADDLDDATGDLVAANLILAARRRGAGLATVLASLADSVAADVRSRRQIEADR 214 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A+A + + V ++ F+ Y+ + P G ++L + A + ++ ++ + Sbjct: 215 AKPRATARWVTIISAGVLLVLTFSG-QYVQP-FSTPLGQVVLALLLAAYVATLVWLKRLS 272 Query: 184 N 184 N Sbjct: 273 N 273 >gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787] gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787] Length = 430 Score = 57.8 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFRRVI 56 K R + L D+P ++ + G+ + IV + E R Sbjct: 273 RKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMRYTC 332 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115 G++ +E+ R + + F +++ + G +++ L N S + + Sbjct: 333 NEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFENRKS 392 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +AK K A + G L + ++ P ++++ Sbjct: 393 RAKRLGEEAGTKLLAPMFGMLAIVLVIVIV---PAFLSM 428 >gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA2] Length = 147 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 8 QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67 Query: 75 ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P Q+ +S G +SE L+ + L+ K + +A A Sbjct: 68 VEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIG 120 Query: 131 WIIGS-LPFCVSTLVYFTSPGYM 152 ++ LP V G + Sbjct: 121 PLVCCHLPAFSLVGVVPIIAGMV 143 >gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 330 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ + ++ + GG + E L LR+ + Sbjct: 228 QFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RDRIGRLTVKMTGVMVVTLLPAL--LIVTAGPGLLAVM 323 >gi|314982954|gb|EFT27046.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA3] gi|315091258|gb|EFT63234.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA4] Length = 293 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLIP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes J139] gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes J139] Length = 249 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +R + P AL ++ ++ AGLP+ AV + P + RR+ + G+ Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 S + + + P Q+ +S G +SE L+ + L+ Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVNSGEGISELLSAHAAQLQ 202 >gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 330 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 +K R +D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VKRRAAARRQSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 HFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG + V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|118466209|ref|YP_879790.1| type II secretion system protein F [Mycobacterium avium 104] gi|118167496|gb|ABK68393.1| bacterial type II secretion system protein F domain [Mycobacterium avium 104] Length = 267 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ALD++V +RAG A V G+++ PV R V LG ++ ++ R Sbjct: 97 ALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAASRGSAR 156 Query: 79 QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E + + G ++ + R + +R+ A+V + A+A+A I+ +LP Sbjct: 157 PEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALP 216 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V A G++ +++ Sbjct: 217 VLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263 >gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ R D+ P +D++ GL + ++ V+ + SE Sbjct: 168 VQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGVAQR 227 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 228 QFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + ++ +L + L+ PG++ V+ Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAVM 323 >gi|50841533|ref|YP_054760.1| membrane spanning protein [Propionibacterium acnes KPA171202] gi|50839135|gb|AAT81802.1| membrane spanning protein [Propionibacterium acnes KPA171202] gi|315107454|gb|EFT79430.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA1] Length = 293 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4] gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4] Length = 298 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 LD++ + ++G+ V A+ + S + + + S + + + Sbjct: 159 FLDLLATATKSGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDIS-NNGFSIAGENLRKS 217 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + L EV F+ V+ + G +++AL LS+ +R+ ++ + + + AK +I Sbjct: 218 LDLPEVRDFTAVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMGIPLILF 277 Query: 136 LPFCVSTLVYFTSPGYMNVL 155 + F + +V +PG +N+L Sbjct: 278 IMFPI--IVEIIAPGVLNLL 295 >gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 267 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 116 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 175 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 176 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 235 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 236 GVMILTLLPALFIV 249 >gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 5/129 (3%) Query: 30 GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 G+ + + VI + E + + G + S +RM ++ ++ Sbjct: 183 GMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVYQSDNLANLTS 242 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +++ + GG + E L LR+++ K K + K + ++ +L + ++ Sbjct: 243 LMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTLLPAL--IIVT 300 Query: 147 TSPGYMNVL 155 PG++ V+ Sbjct: 301 AGPGFLAVM 309 >gi|289427386|ref|ZP_06429099.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|289159316|gb|EFD07507.1| type II secretion system F domain protein [Propionibacterium acnes J165] Length = 293 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++ S G V DA+ Q+ + + RV+ ++ + + Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170 Query: 80 EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + I + ++ GG + L L+ L++R +++ + + + + Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V Y+ G +LL A L G++ + Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270 >gi|225022081|ref|ZP_03711273.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii ATCC 33806] gi|224945202|gb|EEG26411.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii ATCC 33806] Length = 290 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 5/167 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L +IV ++AG + A+ + ++P +R E G S + + P Sbjct: 101 MLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGSAGAELEQ----SP 156 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +S + G L+ L N+ + + +++ +A A A+A ++ LP Sbjct: 157 ILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLALLP 216 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L G ++L + GI+ +I Sbjct: 217 LLGMVMGHAIGVNVPAFLTGGGVGGLILIAGVSAECAGILWSDHIIQ 263 >gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 205 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K+ + KRT L P +DI V++G+ + +++ + + +V + Sbjct: 45 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 104 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + Y P E+ F + + G + E L +LS+ +R+ + + Sbjct: 105 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 163 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + K + + L + ++ SP + +L Sbjct: 164 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 199 >gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 682 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 58/149 (38%), Gaps = 3/149 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 + + L + + G + ++V + SS + EF + + G+SL Sbjct: 456 RSRQAVVGKLSENLRKLSSANDTGQTLLESVKTVSDTSSGKLADEFEVMHAKVNYGMSLR 515 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + ++ +IS + +++ L+ ++ ++ +++ + ++ + Sbjct: 516 SALVEFNNKYHIPRLARTVKLISKAQEASSQITDVLSTAAQASENQDDIERERKSRT--- 572 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + II + ++ +++V+ Sbjct: 573 RMQVAIILMTYLTLLAVMAILKTQFLDVM 601 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 11/176 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62 R + P+A+ + ++ G L + +A+ + V EF+ +++ G Sbjct: 147 RKREINMLLPDAISFMY-ALSVGGLNQLEILEAMGR-AEDTYGEVAREFQSIVQETEYFG 204 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAK 118 +I P E+S F T + GGN+ + L R + + M + Sbjct: 205 TDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNMEQFLDDKKEKHLRTAKQEQEMTLE 264 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 L E + + L + ++ ++L G + L +L+ Sbjct: 265 TLELFGEMYMTLSLFPLLLIIILVIMSMLGQAQQSLLYATVYGLIPLTGVGFLVLV 320 >gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 204 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 44 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 103 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 104 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 163 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG+M + Sbjct: 164 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 198 >gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 319 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 3/175 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 L+ + +R G+ + A+ + D + + + + LG E++ Sbjct: 107 LEALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAF 166 Query: 73 VRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + + G L++AL +L+ +R+ K ++A + + + Sbjct: 167 ADELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVR 226 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + + F P Y + G ++LG A + + +MR + F Sbjct: 227 WMTFI-TVGVVVAGFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 279 >gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54] Length = 256 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 29 AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 GL + ++ V++ + + + E R E G + +S++R+ ++S Sbjct: 120 VGLSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 179 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 +I+ Q GG + E L LR+++ ++ K + K +A +I +L + + Sbjct: 180 RLIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPALLIV 237 >gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 716 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ ++ +FP+ L + + G+ + D++ ++ S + +E R + G+ Sbjct: 494 IMSRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAKSKSGHLGNEIRMIWADISWGM 553 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++S+ R + Q ++ T+I+ ++ G++ E L +R ++MK + +A+S Sbjct: 554 NVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMKRE-RAMS 612 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M I L F ++Y S ++ + Sbjct: 613 MMIYIVIIYISFLVFV--GVIYVISTTFLAEM 642 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 15/191 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59 K +R P A+ + + G+ + + ++ S V E +I Sbjct: 175 KFQASERKGDIDRQLPYAVTFMYALSKGGMNIIEVFRLLSRSGSTYGEVSKEINAIIREM 234 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KN 114 G + +IS + P + + GG++ + + + + Sbjct: 235 DYFGYDMKTAISNISERSPSDRFNELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEK 294 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + L E+ +A++ G L + + M ++ M+ + A + I Sbjct: 295 GFLETLGLLAESYVTAFVAGPLFIIIMGV--------MMAVMGSGSEVMVYAIIYAVLPI 346 Query: 175 GIMVMRLMINF 185 G ++ +MI+ Sbjct: 347 GSLMFVVMISI 357 >gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 330 Score = 57.4 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70 ++ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 181 NELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQ 240 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 241 RLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRALLRERIGRLTVKMTG 300 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + L+ PG + V+ Sbjct: 301 VMVLTLLPAL--LIVTAGPGMLAVM 323 >gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 275 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57 +K +I ++T L FP +D+ ++AG+ + +A+ + ++ + S +V+ Sbjct: 115 IKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDIASLIIQVVR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L ++ + + + E+ F + G ++ E L S +R+ + M++ Sbjct: 175 KAEV-HGLQNAMKTLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFSTDIREIQLMES 233 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + + + K + + + ++ S + + + DP Sbjct: 234 EEKISKLSVKLTLILFLF--ILIPFILLIISTTALELFLGDP 273 >gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris StLB046] Length = 391 Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 24 VRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +RAG+ + +A ++ Q +S P++ +V E G+ S+++ + + P Sbjct: 62 ATLIRAGVSLVEATNILAKQSTSKPLKKALEKVEEDVRAGIPFSDAVQKHPKVFP----E 117 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 F ++ + GN+ + L L+ + KVQ+ A ++ + V Sbjct: 118 LFVNMMR-SGEATGNIDDTLDRLANSYEKSFRLIKKVQSTLT---YPAMLLILIVVVVFF 173 Query: 143 LVYFTSPGYMNVL 155 ++ F P ++ Sbjct: 174 MLIFIVPTFVESF 186 >gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus bromii L2-63] Length = 291 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 4/149 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K I KR+ + L DF + + AG+ + +A + + + +E + + + Sbjct: 139 KKRILKRSDELLHDFSEVVSKLALLTNAGMILREAWQEVAFAGTSTIYTEMQTTVNEMNN 198 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120 G+S +++ + E+ F++ I G L+ L S+ + +K ++ Sbjct: 199 GVSEIDAMFNFGSRCIIPEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVW---QLKKQLV 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 E AS +I V L+ P Sbjct: 256 RREGEKAASKLLIPICVMFVGILIMIIVP 284 >gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 336 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 173 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LR+ + Sbjct: 233 QFAAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 292 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + + + K + +I +L + + Sbjct: 293 RERIGRLAVKMTGVMIVTLLPALMIV 318 >gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3] gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3] Length = 329 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 5/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ R ++ P +D++ GL + ++ VI + E Sbjct: 166 IRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQVISHDFTTMLPVLSWELGVAQR 225 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LRD + Sbjct: 226 QFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHGGAVQEPLRMFGDRLRDGRRALL 285 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + K + +I +L + L+ PG M V+ Sbjct: 286 RERIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVV 321 >gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99] gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length = 264 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 1/130 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+I+V +R G A V ++ PV + R V LG ++ + R L Sbjct: 97 ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156 Query: 79 Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + R+ AKV A A+ASA I+ LP Sbjct: 157 PAHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILAGLP 216 Query: 138 FCVSTLVYFT 147 L Sbjct: 217 VLGVVLGQLI 226 >gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288 >gi|282853287|ref|ZP_06262624.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|282582740|gb|EFB88120.1| conserved hypothetical protein [Propionibacterium acnes J139] gi|314965660|gb|EFT09759.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2] gi|314982824|gb|EFT26916.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3] gi|315091475|gb|EFT63451.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4] gi|315094229|gb|EFT66205.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1] gi|315104881|gb|EFT76857.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2] gi|327329208|gb|EGE70968.1| hypothetical protein HMPREF9341_00681 [Propionibacterium acnes HL103PA1] Length = 256 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 5/160 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAHAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + L G L + +G++ Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242 >gi|256786940|ref|ZP_05525371.1| integral membrane protein [Streptomyces lividans TK24] Length = 234 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%) Query: 6 KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++R AK +A+ + VRAG +A+ S+ + V+ Sbjct: 49 RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +++ + + + V G L+ L L LR ++ ++ ++A Sbjct: 106 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 165 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 A+A+A ++ LP L ++VL++ G L +G+ + Sbjct: 166 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 225 Query: 182 MIN 184 ++ Sbjct: 226 IVR 228 >gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 297 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 4/125 (3%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMVRYMPLQE 80 V AGL A+ P+ E +R +E Q + + + + + E Sbjct: 162 AVGVAAGLTPWAALKEAAQGGDGPLYREVKRALEEGEAQARSGPRTAVLGALAEELGVPE 221 Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S F+ ++ + G A+ + R +R+ + K + A ++K ++ + Sbjct: 222 FSSFAELVCQAIEYGAEGFVSAIEDAVRHMREVRRAKLEAAAQKAQSKMLVPLLVLVGAM 281 Query: 140 VSTLV 144 + L+ Sbjct: 282 MCFLL 286 >gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74] gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74] Length = 312 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 64/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R + Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALHDAR 217 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310 >gi|294630591|ref|ZP_06709151.1| integral membrane protein [Streptomyces sp. e14] gi|292833924|gb|EFF92273.1| integral membrane protein [Streptomyces sp. e14] Length = 283 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + VRAG +A+ S + V+ G + +++ R + + Sbjct: 118 LAGEVRAGRQPGEALLCAARDSGG-FGAAEAAVLAAARFGGDVPGALAAAARRPGAEGLR 176 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ L L LR ++ + ++A A+A+A ++ LP Sbjct: 177 GLAACWRVTVDQGAGLAAGLDRLEAALRADRDQRCDLRAQLAGARATAVMLAGLPVLGLL 236 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++VL++ G L V G+ ++ Sbjct: 237 LGTAMGADPLHVLLHTGAGLGCLVVGGVLEGAGLWWASGIVR 278 >gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4] Length = 268 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 117 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 176 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 177 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 236 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 237 GVMILTLLPALFIV 250 >gi|302864764|ref|YP_003833401.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501058|ref|YP_004079945.1| type ii secretion system f domain protein [Micromonospora sp. L5] gi|302567623|gb|ADL43825.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] gi|315407677|gb|ADU05794.1| Type II secretion system F domain protein [Micromonospora sp. L5] Length = 299 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 50/154 (32%), Gaps = 3/154 (1%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + A+ + + + ++ E R + G ++ + + Sbjct: 128 GQGLQQAIIGTIATAPEEIQEEVRTLAARLQAGWLARSALLAFADEIADPVADQVVAALI 187 Query: 90 VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + G L + L +++ + +V+A + + + + + + Sbjct: 188 LHLTDRGERLGDVLGSIATAASAEVATRREVEAKRTQPRFAVRFLTGMTLATLAY-GLVN 246 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 Y+ G +++ V A + ++ +R M Sbjct: 247 SDYIRP-YGTLTGQLVMAVLGAAFVGLLVWVRSM 279 >gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica DSM 5511] Length = 536 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 56/140 (40%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R P+ LD + AG+ + AV + G P+ +E RV G Sbjct: 310 HRRRIDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVRGSELGPLGAELDRVWADVQWGAD 369 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + +R+ R + + + T+++ GNL+ L +R + ++ + + + Sbjct: 370 LQTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMV 429 Query: 125 EAKASAWIIGSLPFCVSTLV 144 E ++ + + ++ Sbjct: 430 EYTIVVYVSYLVFLFIIAVL 449 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 28 RAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH-LGLSLSESISRMVRYMPLQEVSFF 84 R+G+ + V+ + EF + G+ + ++ M R P + F Sbjct: 23 RSGMAFPKVIRVVAAHEATYGEAAEEFDVAVRNMDTFGVDVVTALQTMGRRSPSPQFREF 82 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKN--MKAKVQALSMEAKASAWIIGSLPFCVST 142 S + Q G +L + L R ++ + + LS A+A ++ + P + T Sbjct: 83 SENLVSVLQSGHSLLDFLERQYRDYQEEAESHQERTLGLLSTLAEAYVTVLVAGPLFLIT 142 Query: 143 LVYFT 147 ++ Sbjct: 143 ILVVI 147 >gi|309810893|ref|ZP_07704694.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308435199|gb|EFP59030.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 232 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 7/170 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------SLSESISRMV 73 +D +V +RAG V+ A+ + + Q L L + + + Sbjct: 51 VDALVTVLRAGSAVTPALIMALDGVGATSAGGSATSAGWQRLRLEAVRDGDVVQVWRDLG 110 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + ++ G L++A+ +R +R R++ +A V + AKAS ++ Sbjct: 111 RLWRSAAFEEVAAAWQLSARHGCPLADAMEGAARSVRARRSHRACVDGATAGAKASTSVL 170 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L + + G + L A M +G R M Sbjct: 171 LGLPVLGVGLGMLLGVDMLGC-YSGFSGLVTLWPGIALMFVGARWSRRMT 219 >gi|167769282|ref|ZP_02441335.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM 17241] gi|167668250|gb|EDS12380.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM 17241] Length = 309 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 2/167 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67 + AL II + + AV + + PVRS F + L + Sbjct: 128 KKNIAAELETALSIITTAYLRNEDIQTAVEENIDYLNPPVRSVFVEFLTRIKLVDPDVDA 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M + + + G L L + L D + + +++ L E + Sbjct: 188 ALQDMGTKIDNAVFREWVAALLTCRHDRG-LKTILTPIVAKLSDMRIVNGELENLVFEPR 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + L L+Y+ + + +VL++ P G LL AA M I Sbjct: 247 KEFITMQVLVIGNIPLLYWLNQDWYDVLMHTPLGQALLAAIAAVMFI 293 >gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680] gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis MA-4680] Length = 309 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 4/185 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + ++R + + + +R G+ + A+ + D + + + + LG Sbjct: 98 QMAQERIGQL-EALSEWTQRLAGLLRLGMGLEQAMITSRQGAPDELAPQIVNLSDRLRLG 156 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + + + G L++AL +L+ +RD K ++A Sbjct: 157 WRPDGALRAFAEELNDVTADKVVAALILSVNDRGPGLAQALEDLAGTVRDEVAKKRAIEA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + + + + + + F P Y + G ++L + + +MR Sbjct: 217 DRAKPRTTVRWMTVI-TVGVVVAGFFVPSYTKP-YSTLLGQLVLAFLTVGFIGVLALMRQ 274 Query: 182 MINFD 186 + F Sbjct: 275 LGAFR 279 >gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M] gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M] Length = 346 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 73/193 (37%), Gaps = 20/193 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++I + +P+ L + SV +G+ + A+ + + R+++ Sbjct: 57 QYMIAREQKALESVYPSFLRDLAESVSSGISLIYALKLTANADYGALNKYLRKLVIWLSW 116 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-------LGGNLSEALANLSRILRDRKN 114 G+ +++ R +Y +FS I ++ GG++ + L L+ + Sbjct: 117 GIPFPKAMERFNKYF------YFSPAIRRANEILLEIYKSGGDIVKTLRLLAENIEKTSE 170 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAA 170 M + + K+ ++I + + + P + VL++ G + + Sbjct: 171 MYKDI---ISQVKSKVFVIYMIFLILVAIAVIIKPIFAEVLVSKIGGKGIDVSYFKFLSF 227 Query: 171 FMLIGIMVMRLMI 183 M+I + ++ Sbjct: 228 LMVISFAISSSIM 240 >gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703] Length = 203 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K+++ KRT L P +DI V++G+ + ++++ + + +V Sbjct: 46 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 105 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + E L LS+ +R+ + + Sbjct: 106 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 164 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + AK + I L + +V SP + ++ Sbjct: 165 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 200 >gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 267 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 116 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 175 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 176 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 235 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 236 GVMILTLLPALFIV 249 >gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288 >gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG+M + Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288 >gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 271 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 120 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 179 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 180 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 239 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 240 GVMILTLLPALFIV 253 >gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 272 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P D++ + AG DA + PV R LG SE+ R Sbjct: 130 QLPLVADLLAACLSAGAGPRDAAEAVGESLGGPVGDRLVRTAAEIRLGGEPSEAWGRFGE 189 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 + + + + G ++ ++ ++ +R + A +A +A + + Sbjct: 190 ---IPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITAPVGL 246 Query: 134 GSLPFCVSTLV 144 LP ++ V Sbjct: 247 CFLPAFLAVGV 257 >gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786] Length = 261 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 110 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 169 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 170 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 229 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 230 GVMIVTLLPALFIV 243 >gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147] Length = 234 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 83 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 142 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 143 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 202 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 203 GVMIVTLLPALFIV 216 >gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 383 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 26/194 (13%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR L + + AGLP+ A+ Q+ +PV F ++ +S Sbjct: 37 KRKKIKLAQLTVFTQQLAAMLEAGLPLVSALEAQEEQTENPV---FSIIVRNVRNEVSAG 93 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S S P + F +++ + GNL+E L S D + +V+ Sbjct: 94 RSFSDACSDYPNAFPNLFISMVE-AGEASGNLAEILDKTSVYFEDMVKLVRQVKGALT-- 150 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-----------------LGVAA 169 +IG V+ L+ P + + G L + Sbjct: 151 -YPVAVIGLAVILVNVLLVAVIPVFAEMF--TSFGQDLPKPTQMLIDLSAFLKSYIIYII 207 Query: 170 AFMLIGIMVMRLMI 183 +GI ++R I Sbjct: 208 IATGVGIWLLRKFI 221 >gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 270 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 119 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 178 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 179 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 238 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 239 GVMILTLLPALFIV 252 >gi|215432631|ref|ZP_03430550.1| transmembrane protein [Mycobacterium tuberculosis EAS054] Length = 167 Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV- 81 +V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 1 MVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 60 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 61 ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 120 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 121 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 163 >gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78] gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG] gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF] gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78] Length = 312 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R ++ Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 217 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310 >gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 332 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 5/147 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSES 68 + P +D++ GL + ++ V+V + E G + +S Sbjct: 180 ISAELPLLVDMLRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQS 239 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R+ +++ ++ + GG + E L LR+ + + Q + K Sbjct: 240 LQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKM 299 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +I +L + L+ PG M VL Sbjct: 300 TGVMIVTLLPAL--LIVTAGPGVMTVL 324 >gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein [Burkholderia xenovorans LB400] gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein [Burkholderia xenovorans LB400] Length = 337 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 3/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 ++ KR +D+ P +D++ GL + ++ V+V + E Sbjct: 174 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 233 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S++R+ +++ ++ + GG + E L LR+ + Sbjct: 234 QFTAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 293 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 + + + K + +I +L + + Sbjct: 294 RERIGRLAVKMTGVMIVTLLPALMIV 319 >gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] Length = 268 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 117 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 176 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 177 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 236 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 237 GVMILTLLPALFIV 250 >gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 266 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 115 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 174 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 175 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 234 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 235 GVMILTLLPALFIV 248 >gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium 6_1_63FAA] Length = 389 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 14/158 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58 + D+P+ + +V +RAG + A+ I + E R + Sbjct: 235 RKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHEKERSAYEEIVRTCKE 294 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G+ +E+ R + + S ++ + G NL E L + D + A Sbjct: 295 MQSGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 354 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KV+ K ++ + + L+ P + + L Sbjct: 355 KVRGEEASTKL---LLPMVLQLIVVLMILMIPAFFSFL 389 >gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49] Length = 211 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 ++ R D+ P +D++ GL + ++ V+ + SE Sbjct: 49 VQRRASSRRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 108 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ R+ +++ ++ + GG + E L LR+ + Sbjct: 109 QFVAGRTREQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSML 168 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + K + ++ +L + L+ PG++ V Sbjct: 169 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAV 203 >gi|302205373|gb|ADL09715.1| type II secretion system membrane protein [Corynebacterium pseudotuberculosis C231] Length = 251 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%) Query: 6 KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 K+R + ++ AL + +RAG+ S A+ + + ++ + Sbjct: 67 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 126 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S S + R + + + + + + G L+ L L + + Q Sbjct: 127 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 185 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 244 Query: 181 LMI 183 ++ Sbjct: 245 AIM 247 >gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 113 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 172 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 173 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 232 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 233 GVMILTLLPALFIV 246 >gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola SANAE] gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella paludicola SANAE] Length = 678 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 61/151 (40%), Gaps = 5/151 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P+ L + + G+ ++ ++A+I + + SE +++ G+ ++ Sbjct: 453 RRERKISAEMPDFLKKLASTNETGMTLTQSIALISNDNFGTISSEVKKINRNIQWGIDVN 512 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + T+I+ S+ G++ + L + M +++ + Sbjct: 513 TALKMFGNSLNTALSQRVITLITKASESSGDIRDVLNVAAND----AKMGERIRRERSDG 568 Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLI 156 I + FCV VY S ++ V+ Sbjct: 569 MLIYVAIIFITFCVFIYCVYTLSSSFIPVMY 599 >gi|283797116|ref|ZP_06346269.1| conserved hypothetical protein [Clostridium sp. M62/1] gi|291075533|gb|EFE12897.1| conserved hypothetical protein [Clostridium sp. M62/1] Length = 309 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91 + AV + + PV F+ + L + ++ M + + + +S Sbjct: 152 IVTAVEENIAYLNPPVSKVFQNFLTQIKLVNPNVEAALRGMQGRIDNEVFREWCDALSDC 211 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 +L L + L D +N+ A+++ L E + I+ L+Y + + Sbjct: 212 QHDR-SLKTTLTPIVAKLSDMRNVNAELEYLIAEPRKEFLIMVIFVIGNIPLMYMLNKDW 270 Query: 152 MNVLINDPRGHMLLGV--AAAFMLIGIMV 178 +VL++ P G ++L V A F+ G +V Sbjct: 271 YDVLMHTPLGQIILSVTAAVIFVSAGCVV 299 >gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 647 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 4/148 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R D+FP L+ + AG+ + DA+ ++ ++SE RR+ + G LS Sbjct: 432 RRIRSMEDEFPEFLNRLASINEAGILLIDAINMVAQTKIGVLQSEVRRMQKGLSWGQDLS 491 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + S T++ S+ ++ L ++ ++N++ + Sbjct: 492 SVFMEFESRVKTTMNSRIITLLVKASESTSDIIGVLHIAAKDAELQQNLRKERSTEMA-- 549 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 I + F V + + Y Sbjct: 550 --VYLFIVYISFAVFLFIIYVLTAYFIP 575 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 11/176 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GL 63 R + P+ + + ++G + V DA + S EF ++ G+ Sbjct: 122 RQSYIDQSLPHGVAYMYALTKSGGVTVHDAFRSLSEHSHVYGLAADEFGYIVRDMDYFGM 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKV 119 + +I + F I GG+L+ L + + ++ ++ Sbjct: 182 DVLSAIRNCSSTTSSTNLKAFLDGILFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEM 241 Query: 120 QALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + EA + +++G + + + F G M +L ++L+ V F L+ Sbjct: 242 LGVLAEAYVAVFVVGPIFMIIILVVFGFMGSGSMPILYT--LIYLLIPVGTLFYLV 295 >gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 273 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 122 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 181 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 182 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 241 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 242 GVMILTLLPALFIV 255 >gi|292490576|ref|YP_003526015.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291579171|gb|ADE13628.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 410 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A + ++ PVR R+ E G SL+E++ Sbjct: 80 LATLLRAGLPLDRAFSTLIEIAEEGPVREILTRLQEQVRGGASLAEAMESQGE-----TF 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GG L L L+ + K +K A++ A ++G V Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKN---AVTSALIYPAILVGVAGLSVI 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ F P L D G L + G ++ Sbjct: 192 ILLAFVVPQ-FQQLFED-AGKALPLATQIVIAAGDLL 226 >gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 285 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRTA + P + + V +G+ + DA +I S + R E G S + Sbjct: 138 KRTADCELELPEVVSTMAILVNSGMVLRDAWRMIGESSEGAIYKLMREAGENMQNGYSDA 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125 ++I R E+ F++ + + GG L LA S L K + L + Sbjct: 198 DAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESSELWSSKRQ----KTLQLG 253 Query: 126 AKASAWIIGSLPFC 139 KASA ++ + Sbjct: 254 EKASAKLLAPIMLV 267 >gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 678 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 52/147 (35%), Gaps = 3/147 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + L + + G+ + +++ ++ SS + EF + G +L ++ Sbjct: 457 RHSIIGKLSENLRKLSSANETGMTLLESLNIVARTSSGRLADEFSIMHRKVQYGTNLKQA 516 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + +S +IS + + + L+ ++ ++ ++ ++ + + Sbjct: 517 LREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDIDRDRKSRT---RM 573 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 II + ++ + + Sbjct: 574 QVVIIIMTFLTLLGVIAMLKVQFFETM 600 >gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 272 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 121 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 180 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 181 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 240 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 241 GVMILTLLPALFIV 254 >gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 285 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 52/145 (35%), Gaps = 3/145 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + D P + ++ ++ G + + S ++ R+ + + L Sbjct: 134 KRRQEEITRDLPQLISKMMIALETGKSFLTTIQRLEETSGPRMKKMLARLNANIRI-MKL 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ + + F+ + + G G + ++ LR + K S Sbjct: 193 TDAVDLFAAETDVPVMRDFAAAVKIGVNSGYGEAKKYFDSIKGDLRKLRLAALKEVTRSQ 252 Query: 125 EAKASA-WIIGSLPFCVSTLVYFTS 148 K +I+ +L + ++ F Sbjct: 253 PEKIKMLYILVALHAFAAVIIAFID 277 >gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 269 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 118 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 177 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 178 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 237 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 238 GVMILTLLPALFIV 251 >gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 274 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 123 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 182 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 183 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 242 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 243 GVMILTLLPALFIV 256 >gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH] Length = 278 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 127 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 186 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 187 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 246 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 247 GVMILTLLPALFIV 260 >gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus V24Sta] Length = 262 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 5/177 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60 HL+ R + F ++F L +++ + AG+P+ AV + + + E Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ +P V++ +++ + L + K ++A+ Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 S+ +++ + + + S + L G + L LIG++ Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQIGGLALDPLTLMALIGLV 243 >gi|158320934|ref|YP_001513441.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs] gi|158141133|gb|ABW19445.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs] Length = 281 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 4/151 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K R K + N D++ + G + + DP++ + + S Sbjct: 127 AKDRKNKIRLELCNIQDVMYFQNKIGTSEDIILTYAAEIAKDPLKEPLEYLAAAPKIKKS 186 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+ + + + E+ F + I Q Q G+++E S++++ K ++ K++ Sbjct: 187 VEDSLENLRKVSDVVELQSF-SFILQQRQETGSVAENHKAQSQMMKRNKRLRRKIKR--- 242 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + I+ SL ++ T P + L Sbjct: 243 QYKRTKLIVASLMLFTCYILLLTVPLFAEAL 273 >gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264] Length = 253 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 102 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 161 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 162 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 221 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 222 GVMILTLLPALFIV 235 >gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille] gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille] Length = 317 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 29 AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 G+ + ++ V+ + S + E + + G + +S+ R +++S + Sbjct: 180 VGMSIDQSLHVVENEFSTSLPVLGKELQIAAQQYQNGRTREQSLRRFSSLFENEDMSAVA 239 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +I + GG + + L S LR+++ + K + + K + ++ Sbjct: 240 RLIVQVDRYGGAVQQPLQQFSDRLREQRKLDMKEKVGKLTVKMTGVMV 287 >gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 294 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + + LD++ S+ G + +A+ S R ++ Sbjct: 140 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 199 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G + ++ R+ + ++E+ S+ +++ + G + E+LA+ + +R R+ + + Sbjct: 200 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 258 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + +I L C LV+ P M V Sbjct: 259 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 292 >gi|302329927|gb|ADL20121.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis 1002] gi|308275611|gb|ADO25510.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis I19] Length = 266 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%) Query: 6 KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 K+R + ++ AL + +RAG+ S A+ + + ++ + Sbjct: 82 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 141 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S S + R + + + + + + G L+ L L + + Q Sbjct: 142 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 199 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 200 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 259 Query: 181 LMI 183 ++ Sbjct: 260 AIM 262 >gi|218516408|ref|ZP_03513248.1| pilus component protein [Rhizobium etli 8C-3] Length = 121 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 42 GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101 G+ S P+ E ++ + ++ V + + + G +++A Sbjct: 7 GEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQA 66 Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASA-WIIGSLPFCVSTLV 144 L L++ RD + +A+ +A ++ K + I+ LP ++ ++ Sbjct: 67 LRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVIL 110 >gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 303 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 62/177 (35%), Gaps = 4/177 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59 + ++ R KF F + +R + + + ++ ++ E +++ Sbjct: 114 LDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMNEETDSKLKMELEMIVQEV 173 Query: 60 HLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +++ + V + I + G +LS+ N +R + D+ + Sbjct: 174 QSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCMNAARKINDKLSRARL 233 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + K+ I + + F P G ++ + ++IG Sbjct: 234 IKKKTARLKSVMLAIIGIITLTLVFILFFFPEAKECYSTT--GGKIILMFVLSIVIG 288 >gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184] Length = 262 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 5/177 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60 HL+ R + F ++F L +++ + AG+P+ AV + + + E Sbjct: 70 HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ +P V++ +++ + L + K ++A+ Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 S+ +++ + + + S + L G + L +LIG++ Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQVGGLALDPLTLMVLIGLV 243 >gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44] Length = 311 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 30 GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 G+ + + VI + E + + G + S RM ++ ++ Sbjct: 177 GMSLDQTLQVIGSDFGNVMPVLSREIKLANQQYSRGSTRERSFGRMSEVYQNDNLANLTS 236 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++ + GG + E L LR+++ K K + K +A ++ +L + ++ Sbjct: 237 LMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPAL--IIIT 294 Query: 147 TSPGYMNVL 155 PG++ V+ Sbjct: 295 AGPGFLAVI 303 >gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_00218 [Corynebacterium pseudotuberculosis FRC41] gi|300685089|gb|ADK28011.1| putative membrane protein [Corynebacterium pseudotuberculosis FRC41] Length = 256 Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%) Query: 6 KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 K+R + ++ AL + +RAG+ S A+ + + ++ + Sbjct: 72 KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 131 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S S + R + + + + + + G L+ L L + + Q Sbjct: 132 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A AKA+A+I+ +LPF L + L + G +LL + + +G + + Sbjct: 190 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 249 Query: 181 LMI 183 ++ Sbjct: 250 AIM 252 >gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 286 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ + KRT + P + + V +G+ + DA ++ G+ + + R E Sbjct: 133 MRQKLVKRTENCETELPEVVSTMAILVNSGMILRDAWNMVGGRGEGDIYALMRDASEDIR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119 G + SE+I++ R E+ F++ + G G L LA S L + K + Sbjct: 193 NGHADSEAIAKFGRATNSPEIIKFTSALMQSMGKGAGELPLFLARQSSDLWNEKKQRLLQ 252 Query: 120 QALSMEAKA 128 + AK Sbjct: 253 KGEQASAKL 261 >gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 236 Score = 55.9 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P + ++ +RAG V + + + + E V E LG + +E+ R Sbjct: 95 DLPVVIGLLASGIRAGATVPACLTAVSRATRGRLGEELAAVAEQLRLGAAPAEA----WR 150 Query: 75 YMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L E + ++ + G +++ L + LR + + + ++ Sbjct: 151 RPALPEPLVPVGRDLARAADTGAPVADLLDRHAVDLRRTLRARGTARLE----RLGVLVV 206 Query: 134 GSLPFCVSTLVYFT 147 L C Sbjct: 207 APLGLCFLPAFVLI 220 >gi|294813377|ref|ZP_06772020.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326441910|ref|ZP_08216644.1| type II secretion system F protein [Streptomyces clavuligerus ATCC 27064] gi|294325976|gb|EFG07619.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 295 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 1/162 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG+ A+ G + + + V G + ++ R ++ Sbjct: 124 VAAELRAGIQPGPALLSAAGATDA-LGTAGAPVGAAARFGGDVPRALREAAREPGADGLA 182 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ AL L LR ++ + +++A A+A+ ++ LP Sbjct: 183 GVAACWRVAVDGGAGLAAALDRLEEALRADRDQREELRAQLAGARATVGLLALLPVVALA 242 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + VL++ P G + L + A G+ ++ Sbjct: 243 MGWALGADPLRVLLHTPAGLLCLLLGGALEAAGLWWAARIVR 284 >gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264] gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 373 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 222 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 281 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 282 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 341 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 342 GVMILTLLPALFIV 355 >gi|318060836|ref|ZP_07979559.1| type II secretion system F protein [Streptomyces sp. SA3_actG] Length = 305 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG ++A+A V + ++ G + ++ + R + + Sbjct: 134 LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 192 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 193 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 252 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 253 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 295 >gi|313835752|gb|EFS73466.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314970122|gb|EFT14220.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] Length = 256 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 4 LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ A+ L + A ++ V G S A+ + G Q Sbjct: 70 RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 124 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+S+++ + + + + + + G L+ A +++ R ++A + Sbjct: 125 VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A+AS I+G LP + + L G L + G++ Sbjct: 185 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 242 >gi|300115459|ref|YP_003762034.1| type II secretion system F domain-containing protein [Nitrosococcus watsonii C-113] gi|299541396|gb|ADJ29713.1| Type II secretion system F domain protein [Nitrosococcus watsonii C-113] Length = 410 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A ++++ PVR ++ E G SL+E++ + Sbjct: 80 LATLLRAGLPLDRAFSILMEIAEEGPVRQLLSQLQEQVRGGSSLAEAME-----TQTETF 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GG L L L+ + K ++ A++ A ++G V Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALRN---AVTSALIYPAILVGVAGLSVI 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ F P L D G L + G ++ Sbjct: 192 ILLTFVVPQ-FQQLFED-AGKALPVATQIVIAAGNLL 226 >gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3 [Achromobacter xylosoxidans A8] gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3 [Achromobacter xylosoxidans A8] Length = 331 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 29 AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 GL + ++ V+V + + E R E G + +S++R+ ++S Sbjct: 195 VGLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 254 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 +I+ Q GG + E L LRD++ ++ K + K + +I +L + + Sbjct: 255 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPALLIV 312 >gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS] Length = 328 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + ++R + P +D++ GL V ++ V++ + E + E Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|312138011|ref|YP_004005347.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311887350|emb|CBH46661.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 231 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 1/165 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L+ ++ + G + A V + + R LG S + + + + Sbjct: 64 LEAVIGELGVGAHPAAACDVAAQECRGDASAALRTAAGRARLGGSAAGGLV-LPGSVVAD 122 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+S + SV G L+E L L+ R +A+ A A+A+A ++ LP Sbjct: 123 ELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGLPVL 182 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G LL +G+ +++ Sbjct: 183 GIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVD 227 >gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14] gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14] Length = 311 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + +K+R ++ P +D++ G + ++ + + D + E + Sbjct: 147 LSAWVKRRRRAVENELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPILGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ ++S +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSDVYGDDDLSSLVQLILQVHAHGGAVQEPLRQFSIRLREQRRNSL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K + + K + ++ +L + ++ G L+ +AA +G Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL---------------AGPALVALAATMSSMG 309 >gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 308 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KR LD++ S+ G + +A+ S R + + Sbjct: 156 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 214 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 215 TGISQWQALGQLGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 273 -GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 306 >gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1] Length = 268 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 3/130 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + P+ + LG S + RM Sbjct: 125 RQLPLAADLLTACLEAGAGPYKAAEAVGRSLGGPIGERLAQAAAELRLGGEPSAAWGRMG 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L + + G E+++ L+ R + +A + A+A + Sbjct: 185 A---LPGAHGLARALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLG 241 Query: 134 GSLPFCVSTL 143 + Sbjct: 242 ACYLPAFLLI 251 >gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50] gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50] Length = 434 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 3/150 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +KR + + +P+ +D++ + AGL V A + ++ S + E + G+ Sbjct: 287 QKRNQELMQAYPSFVDLLSLYMGAGLTVKGALLKIVTMTDSRILSEEINYTLNEIRSGIP 346 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E R+ + L T++S + G + L L+ +K ++ Sbjct: 347 ETEGYYRLGNRLELPVYLKMMTLLSQNIRKGTR--DILNMLAEEELSALQLKRELAKKKG 404 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E + + + ++ +P M Sbjct: 405 EEAGTRLLFPMILQLGVVMIIVIAPALMGF 434 >gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM 13280] gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM 13280] Length = 222 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYM 76 DI+ + AGL ++++ S + + + +G+ S E++ R+ + Sbjct: 84 EMTDIVRLGLSAGLSFDASLSLYCEGRSGELAQLMEKALFCWQVGVTSRDEALDRVAQDA 143 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 ++ + F+ +S +LG L+E L R +R + + K I Sbjct: 144 GVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVEREIERAPVKL--LIPTGT 201 Query: 137 PFCVSTLVYFTSP 149 + L+ P Sbjct: 202 LILPALLLSIVGP 214 >gi|314928425|gb|EFS92256.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] Length = 251 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 4 LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ A+ L + A ++ V G S A+ + G Q Sbjct: 65 RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 119 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+S+++ + + + + + + G L+ A +++ R ++A + Sbjct: 120 VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 179 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A+AS I+G LP + + L G L + G++ Sbjct: 180 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 237 >gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1] gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1] Length = 662 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 1/140 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P L + +GL +S+++ ++ + E +++ E G S S Sbjct: 444 RMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGILSKELKKLKEDLSWGTSTSR 503 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ + S + ++ +L L+ + ++ + +K + ++ M Sbjct: 504 ALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEERLKKE-RSSEMVVY 562 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + F V Sbjct: 563 VVTIYVSFFVFLFIVYVLAM 582 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 4/150 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLS 64 R A A+ + + G+ + D + + E ++ LG Sbjct: 128 RKACIDKSMLPAVTYMYALTKGGMSIYDVFRSLSRHTHIFGTSAEEISYIVRDMDYLGKD 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ P + F + + G ++ + N S +D M + ++ Sbjct: 188 FITALKEAKERTPSERFKDFVDGLIL-VSSSGTITGYIKNKSEQYQDMAEMANRNLLKTL 246 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A ++ + + + + Sbjct: 247 DVLAEVYVTVLVAGPLFIMTTLIVLQFFRP 276 >gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 279 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 52/138 (37%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +KF P +D +++ + +PV ++ I S V + + + G SL + Sbjct: 127 KSKFESQLPAVIDSMIQGLAIEMPVEQVISYIADTKSGVVTPFLKELRDMLFTGSSLESA 186 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + + + ++S +S+ + L + + R + +A +ME Sbjct: 187 LTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKANNMENTM 246 Query: 129 SAWIIGSLPFCVSTLVYF 146 I+ ++ + Sbjct: 247 ILPIMAGYVLPYLVIILY 264 >gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z] gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z] Length = 601 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 8/153 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ K P L I G+ + A+++I G + + SE + V + G Sbjct: 392 IRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMISGNKTGVLSSEIKIVTKELSYGA 451 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS ++ RM + L V +++ S++ + E L L MK+K Sbjct: 452 HLSNALVRMEERIGLVSVKRAISLLVKASEVTDYVREILTIAISDLEHYVKMKSK----- 506 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + + + +S +Y S MNV Sbjct: 507 ---RLNVSFVYLAVIYLSFGIYLYSAYQMNVAF 536 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64 R K D P A+ + ++ + + + + + V E ++ L G Sbjct: 100 RKNKIEQDLPFAITYMQ-ALSSTITLYEIFRSVYEAADLYGEVSRECGLIVRDVELFGED 158 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAKVQAL 122 L +I ++ P + +++ + GGN+ + S R+ R+ + A +Q L Sbjct: 159 LLTAIENTIKITPSENFRELLNDLALVYRSGGNMRNFFNSKSESYREIARQQLDALLQFL 218 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148 M A+ + P + ++ + Sbjct: 219 EMIAEVYVTAFVAGPIAIMIMLVAQN 244 >gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 66/153 (43%), Gaps = 5/153 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHL 61 K+R + + + + ++ +G+ V A+ V+ + + E R V+ Sbjct: 138 AKRRQKQVVLEISTFIPLLRILFESGMAVEQALRVLSSEGKELLPVLSDEIRVVLTRVDS 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L E + + + + E+S +++ GG ++L L +++ DR+ + + Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + AK S ++ L + L+ PG++ + Sbjct: 258 SKLSAKMSMVMMAFL--FPALLIVLAGPGFIAI 288 >gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA] gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA] Length = 312 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R D L+++ +R+GL A+ + Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215 Query: 61 LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LGL+ +++ + + + + G +L+E L + + R + + Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275 Query: 120 QALSMEAKA 128 + K Sbjct: 276 RVAKAPVKM 284 >gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] Length = 273 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++++ K+ L P +DI V++G+ + +++ + + + ++ + Sbjct: 113 IRNIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITK 172 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I +Y E+ F + + G + + L LS+ +R+ + + Sbjct: 173 RAEIN-GLENAIKEFQQYSTETEIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVT 231 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF-TSPGYMNVL 155 + + + +K + + F + V SP + +L Sbjct: 232 EEKNSKLSSKLT---LPLFVFILIPFVALVISPSVLELL 267 >gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 603 Score = 55.5 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 KF P L I G+ + A+ +I + SE + E +G S+S + Sbjct: 397 LKKFESQLPGFLREISDMKDMGMTLQSAIHIIAQSKIGVLTSEVKIASEEIKMGTSVSSA 456 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + ++ + L V +++ S++ +L E LA L MK + Sbjct: 457 LYKLEERIGLVSVKRAISLVIKASEITDHLREILAIAISDLEHYLRMKNE 506 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLS 64 R + D P A+ + ++ + + + V E +I G Sbjct: 100 RKTRIELDLPYAVTYMQ-ALSTTMTLFSIFKSVSDNEDLYGEVSKECGMIIRDVEYFGDD 158 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + P S +++ + GG++++ A+ S R+ + + +M Sbjct: 159 LLTAMRNVQESTPSPTFSELLNDLAMVFKTGGSMTDFFASKSAHYRETAMQELENTLKTM 218 Query: 125 EAKASAWIIGSL--PFCVSTLVYFTS 148 E A ++ + P + +V + Sbjct: 219 EIMAEIYVTAFVAGPIAIMIMVVAQN 244 >gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25] gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 298 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 K R + + ++ +G+ V ++ V+ ++ + E R ++ Sbjct: 141 AKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHLTHELRLILARVDS 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L E + + V + + E + ++ Q GG ++L L ++L DR+ + + Sbjct: 201 GLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQLLDDRRLTRLQEYI 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 M AK S ++ L + L+ P ++ + Sbjct: 261 SKMSAKMSVVMMVFL--FPALLIVLGGPAFIGI 291 >gi|328906757|gb|EGG26529.1| hypothetical protein PA08_1683 [Propionibacterium sp. P08] Length = 205 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 4 LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ A+ L + A ++ V G S A+ + G Q Sbjct: 19 RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 73 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S+S+++ + + + + + + G L+ A +++ R ++A + Sbjct: 74 VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 133 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A+AS I+G LP + + L G L + G++ Sbjct: 134 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 191 >gi|325675226|ref|ZP_08154911.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325553932|gb|EGD23609.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 224 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 1/165 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L+ ++ + G + A V + R LG S + + + + Sbjct: 57 LEAVIGELGVGAHPAAACDVAAQECRGDASVALRTAAGRARLGGSAAGGLV-LPGSVVAD 115 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+S + SV G L+E L L+ R +A+ A A+A+A ++ LP Sbjct: 116 ELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGLPVL 175 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G LL +G+ +++ Sbjct: 176 GIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVD 220 >gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344] gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei 1710b] gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC 10229] gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU] gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344] gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b] gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU] gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 336 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 185 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 244 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 245 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 304 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 305 GVMILTLLPALFIV 318 >gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4] gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4] Length = 231 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ +RAG+PV A+A + + + LG + + + + Sbjct: 94 LDLLAACLRAGMPVPTALAAVAPGAPPDTENALHATANLLALGSDAAPAWAPLRARPGFA 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + + ++ G L+ +L+R +RD ++A+ +A A + ++P Sbjct: 154 EL---AVAATRTARSGAALASTADDLARRVRDGLGVEAEERAER------AGVALAMPVG 204 Query: 140 VSTLVYFTSPGYMNVLIN 157 + L F + G + V++ Sbjct: 205 LCFLPAFFALGVLPVVLG 222 >gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20] gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 339 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 188 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 247 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 248 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 307 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 308 GVMILTLLPALFIV 321 >gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c] gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c] Length = 644 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 1/139 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ P LD + + GL ++ A++++V + + E +R+ G + S Sbjct: 424 RKLGGIESSIPEFLDRMAGINQVGLTMAQAISIMVNANLGVLGYEIKRIKRDMEWGANFS 483 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R R + ++ +I+ S++ G ++E L + R ++ K + M Sbjct: 484 EALMRFERRITTPIIARMVVLITKASEMSGQINEVLNIAASDAR-MSDVLKKERLGEMFI 542 Query: 127 KASAWIIGSLPFCVSTLVY 145 + + + F V Sbjct: 543 YTAIVYLSFMVFIFVVGVL 561 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 23/168 (13%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64 R+ K NA+ + + G + I S+ V EFR+++ GL Sbjct: 127 RSTKINLTLHNAVAYMYAMRKGGGELMVIFRSISDHSNIYGEVALEFRQIVRDADFFGLD 186 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +I R+ P ++ F + + GG+++ L+ + ++ + K Sbjct: 187 EVSAIRRLNLTTPSTKLKDFLQDLLSVIESGGDMATFLSTRVHLFQEEARFEQKQ----- 241 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + + Y+ + + P +++ V M Sbjct: 242 ---------------FLGFLSLVAESYVTLFVAGPLFLIIIMVVMGMM 274 >gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 330 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 29 AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 GL + ++ V++ + + + E R E G + +S++R+ ++S Sbjct: 194 VGLSIDQSMQVLIKEFAQVLPVLSYELRLASEGYVRGRTREQSLARLATGFDNDDLSAIC 253 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 +I+ Q GG + E L LRD++ ++ K + K + +I +L + + Sbjct: 254 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVAKTTVKMTGVMIVTLLPALLIV 311 >gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 300 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D P L+ I + R GL + AV V P+ + R G L + + + Sbjct: 157 DGLPGWLEDIALAARGGLNLRQAVEVANDVGEGPLIDDAREAFARVRAGQPLRQPLLELA 216 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 R P EV+ + G L++ L R++R Sbjct: 217 RLYPDPEVTVALRTLVEAETRGLPLAQTLEEQVRLMR 253 >gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 338 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 187 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 246 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 247 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 306 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 307 GVMILTLLPALFIV 320 >gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic archaeon RC-I] gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured methanogenic archaeon RC-I] Length = 652 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 3/157 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+ K P L + +GL ++ A+ ++ + + SE R++ G Sbjct: 425 LRSKKVRKMDAAVPEFLKRLASFNESGLTLTMAIKALLNSNMGVLNSEIRKIWTDIEWGA 484 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E++ R + + T+I+ S+ G++ E L ++ + + + L+ Sbjct: 485 DAKEALIRFEYRVNTASIRRVVTLITKASESTGDIKETL-FIAAADAAAIQSEREERFLN 543 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 M S I F ++Y S ++ V+ P Sbjct: 544 MLLYLSIIYISF--FVFLYILYTLSTVFLPVVPATPI 578 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 13/180 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64 R + P+A+ + G+ + D I + V EF+ V++ L G+ Sbjct: 134 RQSAIDQMLPHAVTFMHAMRSGGMSLLDIFRAINEHREIYGEVTLEFQAVVQGVELLGMD 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQ 120 L S+ P + F + + GG+L + L + + ++ Sbjct: 194 LITSLRHAATITPSDHLKNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLELL 253 Query: 121 ALSMEAKASAWIIGSL----PFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI 174 ++ E +A++ G L +V + G +++L I P G ++ M + Sbjct: 254 SMLAEVYVTAFVAGPLFLITILVSMGMVSSGNTGQIDLLVYIAIPLGSVMFIWLLIAMGL 313 >gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411] gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411] Length = 374 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + + +R K L + + +D I R V AG +AV + +R E Sbjct: 24 RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHELGVACVKVR 83 Query: 61 LGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG + + F + + G L+ + + +K Sbjct: 84 LGAAPGAGAAGAAPGSDAPSFLAHLFHI-WGISRRHGVGLATLARAHVTDIDAQLAHISK 142 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + A+ + ++ +LP + L + G + L+ + G +L V + G + Sbjct: 143 STSATAGARLTVTVLLALPVGAAALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202 >gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243] gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243] Length = 341 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 190 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 249 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 250 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 309 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 310 GVMILTLLPALFIV 323 >gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 340 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 309 GVMILTLLPALFIV 322 >gi|314932288|gb|EFS96119.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] Length = 288 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 336 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 185 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 244 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 245 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 304 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 305 GVMILTLLPALFIV 318 >gi|222530411|ref|YP_002574293.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] gi|222457258|gb|ACM61520.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] Length = 303 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 63/183 (34%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ + +F F + ++ + + + D +R E ++ Sbjct: 114 LDYMSTSKRFRFEQRFGEFTQNVAIMLKGTPNLMAVLFQAKEEEQDLRLRKEIETILSEV 173 Query: 60 HLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +L +++ VS + + + G ++S+ N SR + D+ + Sbjct: 174 QSGTTLEQALKNFKERNNFSNIVSTWVDSVIFANLSGASISDVCMNASRKINDKLSRARL 233 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + K+ I S+ +V F P + G ++L + ++ Sbjct: 234 IRKKTARLKSVMIAIVSIILITLGMVLFLFPEAKES-YSTAGGKIILAFVLSLVIASTYY 292 Query: 179 MRL 181 M Sbjct: 293 MLK 295 >gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 340 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 309 GVMILTLLPALFIV 322 >gi|313819747|gb|EFS57461.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] Length = 288 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50] gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 328 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + ++R + P +D++ GL V ++ V++ + E + E Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2] gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 292 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AK + DFP+ + I + A +P + AV+ V D + +R + L SL+E Sbjct: 144 RKAKLIADFPDFIRITEGYLTANVPFAKAVSECVKYVGDEWKPILQRFVVDCEL-KSLNE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + + E+ F ++ + + GG+ + + +R+ ++ + A+ + + Sbjct: 203 ALDGLKRDVDMFEIREFVALVKLTLEQGGDAKDGFTAQADKIRE---LQMDMIAIKIGKR 259 Query: 128 ASAWIIGSLPFCVSTLVYFTSPG 150 + II P + L+ F P Sbjct: 260 QTMGIILQGPLLLCNLMVFGLPT 282 >gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 340 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 309 GVMILTLLPALFIV 322 >gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 340 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69 +D+ P +D++ GL + ++ V+ + SE G + +S+ Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308 Query: 130 AWIIGSLPFCVSTL 143 +I +L + + Sbjct: 309 GVMILTLLPALFIV 322 >gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1] gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato Max13] gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato K40] gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1] gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 294 Score = 55.1 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHL 61 ++R K + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 138 AQRRQKKVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDS 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L E + + + + E+S +++ GG ++L L +++ DR+ + + Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + AK S ++ L + L+ PG++ + Sbjct: 258 SKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288 >gi|313773054|gb|EFS39020.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313831097|gb|EFS68811.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|314980646|gb|EFT24740.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|315090039|gb|EFT62015.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|315096612|gb|EFT68588.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|327330162|gb|EGE71912.1| membrane spanning protein [Propionibacterium acnes HL096PA3] gi|327333258|gb|EGE74979.1| membrane spanning protein [Propionibacterium acnes HL097PA1] gi|327443397|gb|EGE90051.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|327447489|gb|EGE94143.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] Length = 288 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|77166345|ref|YP_344870.1| general secretion pathway protein F [Nitrosococcus oceani ATCC 19707] gi|254435718|ref|ZP_05049225.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] gi|76884659|gb|ABA59340.1| General secretion pathway protein F [Nitrosococcus oceani ATCC 19707] gi|207088829|gb|EDZ66101.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] Length = 410 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A ++++ + D PVR ++ E G SL+E++ Sbjct: 80 LATLLRAGLPLDRAFSILMEIADDGPVRQLLSQLQEQVRGGSSLAEAMETQAE-----TF 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GG L L L+ + K +K A++ A ++G V Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKN---AVTSALIYPAILVGVAGLSVI 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ F P L D G L + G ++ Sbjct: 192 ILLTFVVPQ-FQQLFED-AGKALPVATQIVIAAGNLL 226 >gi|256826297|ref|YP_003150257.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] gi|256689690|gb|ACV07492.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547] Length = 264 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 2/164 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD + ++ AGLP + A+ ++ S P V+ G L S ++ Sbjct: 93 LDGLAAALSAGLPPAAALRLVAD--SGPAVPWLEPVLGAGEQGGLLGASWKQVAAGHQSV 150 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ ++ + G L+ A+A + +R ++ + Q+ + A AS +++ LP Sbjct: 151 ALEQVASAWALSERSGAALAPAVAMAAETVRRQRESRQTAQSAASGAMASMYMLSLLPLV 210 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + P G + A +++G + R ++ Sbjct: 211 GLAGAGALGWSPQELYLQQPLGLVSALAGVALLVVGWLASRRLV 254 >gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 307 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + +KR LD++ S+ G + +A+ S R + + Sbjct: 154 RDAAEKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWANQRIRNALSDARI 212 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S +++ + + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 213 TGVSQWQALGALGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELAEIE-- 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 271 -GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 304 >gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 304 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R F LD++ ++ G V +A+ R + Sbjct: 150 LRQEAAQRRRDFRHVVGAFLDLVAMNLAGGRGVPEALMTAAQVGDGWAMVRIREALANAR 209 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G + +++ R+ + + E+ + +++ + G + ++LA + +R R+ + + Sbjct: 210 IVGQTPWQALGRLGEEVNVAELRDLAAALTLVADDGAKIRQSLAARAASMRSRELSELE- 268 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + +I L FC LV+ P + +L+ Sbjct: 269 --GKAGERSQSMLIAQLLFCFGFLVFLGFPALIRILVT 304 >gi|158313207|ref|YP_001505715.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec] gi|158108612|gb|ABW10809.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec] Length = 287 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 3/160 (1%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG + A+ + RR++ + LSL +++ M +P + Sbjct: 109 GLDAGQHLRAAIVASTDHPPAELAGPLRRLVARLDV-LSLPDALWAMRAEVPHPALGPMI 167 Query: 86 TVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + V + G G+L +A+ R + AL + + ++ L ++++ Sbjct: 168 AALDVAYRRGAGDLPRLMASQVEATRQSVALLRDQHALRARHRRAMTLLLVLFTGSTSVL 227 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 T P ++ G ++L V +++ + + M Sbjct: 228 LVTWPAFLAP-YRTMSGQLVLAVIGGGVVLAVRALAAMSR 266 >gi|314974320|gb|EFT18416.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] Length = 288 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149] gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149] Length = 407 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRVIETQ 59 K R + D+P + + AG+P A I +++ V E + Sbjct: 253 KKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQIASVYRQQENTRYVYEEMVYTMREM 312 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118 G SE L F+ ++S + G L+E L + + + A+ Sbjct: 313 QRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRKGTKGLAELLQREAAGAFEERKAAAR 372 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + L + +V P ++ + Sbjct: 373 KLGEETSTRLLGPMFLMLGVVLMIIVV---PAFLTI 405 >gi|307325197|ref|ZP_07604400.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306889001|gb|EFN19984.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 303 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 59/166 (35%), Gaps = 2/166 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 +++ ++ A + AV + +R E ++ + G L ++ Sbjct: 117 EMLRDTLSAAAGLEQAVLATADIAPTALRRELSALVVSVRSGQPLPAALRTFADDADDPL 176 Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + ++ + L+ L L+ +R++ M+ ++ A + + ++ Sbjct: 177 ADVVVAALVMAAERQASQLAALLGELADSVREQVAMRQRIDAGRASIRTGVRVTVTVTLG 236 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++ + + Y++ N G ++L V A + + Sbjct: 237 MAVGLTVFNRPYLDP-FNTLTGQLVLAVVGALFAASFTWLSAIGRV 281 >gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473] gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473] Length = 268 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70 + P +D++ ++AG+ + A+ + F ++++ + + L +SI Sbjct: 122 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 180 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P E+ F + + G + E L LS ++ + + A+ + K + Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + +V SP + + + Sbjct: 241 PLFLFM--VIPFIVLILSPSILGFIYH 265 >gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2] gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2] Length = 261 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 2/148 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60 HL+ R + F ++F L +++ + AG+P+ AV + + + E Sbjct: 69 HLVSARRSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAEVEEDKYIARELALAAREMIV 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E+++ +P V+ +++ + L L K ++A+ Sbjct: 129 MGASQEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQSL 188 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148 S+ +++ ++ + + S Sbjct: 189 IRSLSLMFEIFVVAAMLLPLMVYIVALS 216 >gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.] Length = 391 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 8/155 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ + + +G+ + DA+ + + ++ E+ G SL +++ Sbjct: 62 LPDITRNLSMLLASGVQLMDALQSLSDEYPGFYGDLLNQIRESVSSGTSLHKALESYGYV 121 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P E + + G+L L ++ L + ++KAK+++ ++ + G Sbjct: 122 FP--EYY---INMVQAGETSGSLDMVLVKIADFLETQASIKAKIRSATV---YPLLMAGV 173 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + L F P + + L V Sbjct: 174 STLILFFLFSFVMPKIVRIFTETGGSLPFLTVVIV 208 >gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A] gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A] Length = 662 Score = 54.7 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 56/140 (40%), Gaps = 8/140 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R K + P+ L + +G+ +S+++ ++ + E +++ E G S S Sbjct: 444 RMRKIDERMPDLLRNLSSMNDSGILLSNSLKIMAESKMGILSKELKKLKEDLSWGNSTSR 503 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ + S + ++ ++ L+ + ++ + +K + + Sbjct: 504 ALMKLENNIRTATSSRVLHTLIKANESTSDIKNVLSITAEQVKSEERLKEE--------R 555 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 +S ++ + V+ V+ Sbjct: 556 SSEMVVYVVTIYVAFFVFLF 575 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 16/172 (9%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLSLSESISRM 72 P A+ + + G+ + D + + E ++ LG ++ Sbjct: 137 LP-AVTYMYALTKGGMSIYDVFRSLSSYTHIFGTSAEEISYIVRDMDYLGKDFITALKEA 195 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P + F + + GG ++E + N S ++ ++ + ++ A ++ Sbjct: 196 KERTPSERFKDFVDGLIL-VSSGGTITEYMKNKSEQYQEMADLANRNLLKRLDVLAEVYV 254 Query: 133 IGSL--PFCVS---TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + P + ++ F P +L ML+ V + +V+ Sbjct: 255 TAFVAGPLFIMTTLVVLQFLKPASAQILY------MLIYVIIPLATLLFIVL 300 >gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacterium efficiens YS-314] gi|259166372|gb|EEW50926.1| membrane protein [Corynebacterium efficiens YS-314] Length = 224 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 10/174 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSESI 69 L + + ++RAG P++DA+ + + + P G S + + Sbjct: 49 LAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVL 108 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 P ++ T+ V + G L L L L ++ + A +A+ Sbjct: 109 IDA----PTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQAT 164 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A I+ LP + + L G +LL G ++ ++ Sbjct: 165 AVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKIL 218 >gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3] gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3] Length = 448 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 27/161 (16%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 +FL DFP ALD+I +R+G + A + + + +E V + G ++ + Sbjct: 276 NRFLADFPLALDLIAACLRSGETIMSAARAVGAATGGVLGAELCSVGDALAAGATVGAAC 335 Query: 70 SRM----------------VRY----MPLQEVSFF---STVISVQSQLGGNLSEALANLS 106 R+ R P + + G L+ L L+ Sbjct: 336 ERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATLTRLA 395 Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 DR +A ++++ +A + L C Sbjct: 396 ----DRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLL 432 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----ETQHLGLSLSESISRMV 73 + L + AG P +A+ G + V + R + L +E ++ Sbjct: 79 DLLAAFAAELDAGAPQLEALRRAAGGIDELVAAPAGRSAWLPIDQLGAALDRTEEPGALL 138 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + V + +G L+ L+ + R ++ + ++S ++ Sbjct: 139 CRSEASSLRQLGVAYQVCAAVGARLAPVATMLAAVARADAVRAGELTSALAGPRSSGRLV 198 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP L + VL+ P G L V L+G+ +R + + Sbjct: 199 ASLPLAGIVLGSLAGAAPIAVLLGTPAGIGCLLVGGLADLVGVRWLRRLAD 249 >gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1] gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1] Length = 291 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 64/147 (43%), Gaps = 4/147 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 +++I + ++F P ++ ++ S++ G+ + +A + V+ E+ +++ Sbjct: 136 QNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALRGMDKTLVQREYAKMVAELK 195 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + R + +E F +I + G +S+ L + + D + + K Sbjct: 196 IYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDNQIVALKK 255 Query: 120 QALSMEAKASA--WIIGSLPFCVSTLV 144 +A S + +A ++ +P + ++ Sbjct: 256 KADSKKNLGTAINILLIFVPVILLLII 282 >gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 610 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 75/191 (39%), Gaps = 7/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60 + + R +K D P A+ + ++ + + V I + + V EF +V+ Sbjct: 104 MIARGRKSKIDLDLPYAVSYMQ-ALSTTMSPFEVVKRIYEEKAMFNEVSLEFGQVVRDVE 162 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L G L ++ + + P F + V + GG+++ L+ + ++ + + Sbjct: 163 LFGDDLITALHNLQKTTPSPLFRDFVNDLGVVYESGGDITAYLSAKTEFFHEQAKRELDL 222 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E A ++ + ++ ++ + G + + V +I I ++ Sbjct: 223 LLKTIEIMAEVYVSAFVAGPIALIIMIVAQGMTSAATMTWLVPFMYLVIPVGAIIMIWML 282 Query: 180 RLMI---NFDV 187 LM+ N +V Sbjct: 283 SLMLPPENLEV 293 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 8/134 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P L + + GL + DA+ I + SE V G ++ ++ RM Sbjct: 410 ENNIPEFLRELSDMIDIGLTLPDAIHRISNAKLGLLSSELAIVSRDVSTGAYVNSALVRM 469 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + V +++ S++ NL + ++++ +A+ I Sbjct: 470 EERIGVISVKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE--------RANTAI 521 Query: 133 IGSLPFCVSTLVYF 146 + + +S +Y Sbjct: 522 VYVMIIYLSFGIYL 535 >gi|314977796|gb|EFT21890.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] Length = 288 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes HL001PA1] gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA2] gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA3] gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA4] gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes HL060PA1] gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA2] gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain protein [Propionibacterium acnes HL103PA1] Length = 147 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 11/100 (11%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL ++ ++ AGLP+ AV + P + RR+ + G+ S + + + Sbjct: 8 QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67 Query: 75 ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 P Q+ +S G +SE L+ + L+ Sbjct: 68 VEVWRDPAQD-------VSRAVNSGEGISELLSAHAAQLQ 100 >gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length = 265 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A D++V +R G+ A ++ V + R V LG ++ + + R L Sbjct: 95 AFDVLVGELRVGIHPVQAFGTAADETDGAVAASMRAVAARARLGADVTGGLRAVARMSAL 154 Query: 79 QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + + +R+ A V + A+A+A I+ LP Sbjct: 155 PTHWERLAGYWQLASDHGLAIATLMRAAQSDIVERQRFSASVASGLAGARATANILSGLP 214 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+N G LL + A + G++ + + Sbjct: 215 LLGVLLGQLIGARPVSFLLNGHAGGWLLVIGVALVCAGLLWSDRITD 261 >gi|171060103|ref|YP_001792452.1| general secretion pathway protein F [Leptothrix cholodnii SP-6] gi|170777548|gb|ACB35687.1| general secretion pathway protein F [Leptothrix cholodnii SP-6] Length = 405 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AGLP+ A+ + ++ DP + E + + G + +++ R E Sbjct: 75 LAGLVGAGLPLERALTALGDEAEDPKQGELLAHLRAEVNAGSPFARALASAPR-----EF 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ L +R+ +K K+ ++ A + V Sbjct: 130 DDVYRAVVAAGEQSGQLGRVLDKLADDLEERQALKGKLIGATL---YPAIVSLVAIVIVV 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P V R L +A Sbjct: 187 FLVTYVVPQVAQVFAGGKRALPFLTMAML 215 >gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC 27560] Length = 478 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 15/163 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------S 50 +K +KKR + D+P L I+ AGL + ++ IV Q D + Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALAN-LSRI 108 E + G+S +I++ L + +I + G G LS AL N L+R Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNRA 434 Query: 109 LRDRKNM---KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 L +RKN + + + + +I +L + + + Sbjct: 435 LVERKNTALKRGSEISTKLLGPMTVMLIVALVILMVPALMSIN 477 >gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Corynebacterium efficiens YS-314] gi|23492135|dbj|BAC17109.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 281 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 10/174 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSESI 69 L + + ++RAG P++DA+ + + + P G S + + Sbjct: 106 LAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVL 165 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 P ++ T+ V + G L L L L ++ + A +A+ Sbjct: 166 IDA----PTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQAT 221 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A I+ LP + + L G +LL G ++ ++ Sbjct: 222 AVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKIL 275 >gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 294 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHL 61 ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 138 AQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDS 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL L E + + + + E+S +++ GG ++L L +++ DR+ + + Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + AK S ++ L + L+ PG++ + Sbjct: 258 SKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288 >gi|327325750|gb|EGE67545.1| membrane spanning protein [Propionibacterium acnes HL096PA2] gi|328760172|gb|EGF73747.1| membrane spanning protein [Propionibacterium acnes HL099PA1] Length = 288 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_APKG7N23] Length = 255 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 5/148 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K +R + D +P+ L + +RAG+ V A+ I + +D + R + Sbjct: 39 KKRKLERIKELEDTWPDVLADLSEELRAGMGVESALDSIANRRNDRMGLMLRDAVSDMRD 98 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ +S ++++V G+++ L N+S + ++ + A Sbjct: 99 N-GFGIAMKNFAAKSESAMISRIVSILNVALASSGSIATTLENISEEFWEIYMLRKERIA 157 Query: 122 LSMEAK----ASAWIIGSLPFCVSTLVY 145 + I+ L ++ Sbjct: 158 KTQGTANFILWGGSILCPLMLGAIVAIF 185 >gi|327456790|gb|EGF03445.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] Length = 288 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271 >gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 302 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KR LD++ S+ G + +A+ S R + + Sbjct: 150 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 208 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 209 TGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 267 -GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 300 >gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021] gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021] Length = 193 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ + + D P A D++V +RAG P++ A+ V V P+ V LG Sbjct: 41 RARRERDRVVADLPLAADLMVACLRAGQPITGAIDVTVEAVGGPLGERLAWVSGQLRLGA 100 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 + + + PL + + ++S + G +++ L LS Sbjct: 101 APESAWQALAAEPPLAPL---ARMMSRAALSGAPVADVLTRLSDD 142 >gi|284989266|ref|YP_003407820.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062511|gb|ADB73449.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 300 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 7/171 (4%) Query: 18 NALDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 AL VR + AG + + + P+++E + S ++ Sbjct: 106 EALQEWVRRTSDVLAAGGGLEQTLIRSAHTAPAPIQAEVATLAARLQARWPASRALLAFA 165 Query: 74 RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++L G L+ L L+ L + M+ KV+A + +A+A Sbjct: 166 DDLDDAAGDLVVAALLLGAELRGPGLARVLTELAGSLTEEVTMRRKVEADRAKPRANARW 225 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L + + + Y+ G M+L AA ++ ++ MR + Sbjct: 226 L-LLITVAAAGLAALNGDYLTP-YGTALGQMVLAAIAALIVGCLLWMRRLT 274 >gi|315081086|gb|EFT53062.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] Length = 288 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVTVAVVMYVIALVQMY 271 >gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 312 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R D L+++ +R+GL A+ + Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215 Query: 61 LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LGL+ +++ + + + + G +L+E L + + R + + Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275 Query: 120 QALSMEAKA 128 + K Sbjct: 276 RVAKAPVKM 284 >gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614] gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614] Length = 302 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 7/149 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR + D + LD++V S+ G +DA+ + + F + + Sbjct: 148 LRETAGKRREELCDALSDFLDLVVMSMEGGRSHADALPTVAQIGT---GWAFHTIYDAID 204 Query: 61 ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G++ E++ + + E+ +++ G ++ L ++ +RD + Sbjct: 205 NARPNGMTPWEALGEVGERFGVVELLDLRASLNLAQDEGTSIRNTLIARAQSMRDARLAD 264 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY 145 A +A ++ + ++ Sbjct: 265 AHARANKSTDAMRNNLMVMALVAAAYVIL 293 >gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24] gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24] gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24] Length = 306 Score = 54.3 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + KR LD++ S+ G + +A+ S R + + Sbjct: 154 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 212 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S +++ ++ + ++E+ S +++ + G + E+LA+ + +R R+ + + Sbjct: 213 TGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 270 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S K+ + ++ L C LV+ P M V Sbjct: 271 -GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 304 >gi|124268322|ref|YP_001022326.1| general secretory pathway protein F [Methylibium petroleiphilum PM1] gi|124261097|gb|ABM96091.1| general secretory pathway protein F [Methylibium petroleiphilum PM1] Length = 404 Score = 54.3 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 14/163 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AGLP+ A+ + ++ DP + E + + G + ++ R E Sbjct: 74 LAGLVSAGLPLERALTALTDEAEDPRQRELLAHLRAEVNAGSPFARALGNAPR-----EF 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ L +R+ +++K+ A A + V Sbjct: 129 DDVYRAVVGAGEQTGQLGLVLEKLADDLEERQELRSKLIG---AALYPAIVSLVAIVIVV 185 Query: 142 TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179 LV + P +V +L ++A G ++M Sbjct: 186 FLVTYVVPQVASVFAGGKRALPFLTSAMLAISAFLRSWGWLLM 228 >gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833] gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833] Length = 260 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P A+D++V +RAG PV AV V P+ V LG + + + Sbjct: 119 DLPFAIDLLVACLRAGQPVDRAVEVTADAIGGPLAERMSWVAVQLRLGADPGTAWAGLAD 178 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 P F+ + ++ G +++ L L Sbjct: 179 EPPAAP---FARTMIRAAKGGAPVADVLVRL 206 >gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC 27755] gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC 27755] Length = 397 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 12/159 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRVI 56 + R + D+P + + + AG+ V A IV ++ E + Sbjct: 240 KQARQKQMCLDYPEVISKLTLLLGAGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTC 299 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115 G+ +E + R QE F ++S + G L++ L + + + Sbjct: 300 RQMDGGVPEAECYEKFGRRCGTQEYMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKA 359 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +A+ K ++ LV P + V Sbjct: 360 RARRLGEEAGTKL---LLPMFLMLAEVLVIVVVPAFFTV 395 >gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri] Length = 277 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70 + P +D++ ++AG+ + A+ + F ++++ + + L +SI Sbjct: 131 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 189 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P E+ F + + G + E L LS ++ + + A+ + K + Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + + +V SP + + + Sbjct: 250 PLFLFM--VIPFIVLILSPSILGFIYH 274 >gi|318080885|ref|ZP_07988217.1| type II secretion system F protein [Streptomyces sp. SA3_actF] Length = 219 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG ++A+A V + ++ G + ++ + R + + Sbjct: 48 LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 106 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 107 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 166 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 167 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 209 >gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822] gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis] Length = 328 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 ++ + ++R + P +D++ GL V ++ V++ + E + E Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+SR+ + ++S +I + GG + + LA + +R+R+ ++ Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143 K + + K + ++ +L + + Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308 >gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_APKG7N23] Length = 191 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 76/188 (40%), Gaps = 9/188 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K R A + A+ I + +G+ V++A+ I + + FR++ G + Sbjct: 1 MKSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIADEDYGDLSVIFRQIFADTDSGRN 60 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---- 120 S+++ +R + + + + + N+ + L +++ R+ K + ++ Sbjct: 61 FSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAE--REAKERRMELDGFIE 118 Query: 121 --ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + E + I+ L ++ ++ G + + V +F++ G+ + Sbjct: 119 GLAGTAEFFIALSILLPLIVVIAAVISSIMEGA-GAIFGGGMTMPPICVPVSFLVTGLGL 177 Query: 179 MRLMINFD 186 L++N Sbjct: 178 AGLIVNTK 185 >gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 188 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D + +RAGLP++ A AV + +RS F R + LG ++ + + + Sbjct: 51 DTLAVCLRAGLPLATAAAVAAETAPPELRSSFTRAADLLALGADPDQAWAPVDA--DSVD 108 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + +IS S+ G L++++ + R R A+ +L +A I G L C Sbjct: 109 FAELAALISRASRAGSALADSVGGFADATRRR----AENASLEAAERAGVKISGPLGLCF 164 Query: 141 STLV 144 Sbjct: 165 LPAF 168 >gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288 >gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 652 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 50/107 (46%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 P+ L+ + R GL ++ A+ ++V + + E RR+ G + SE++ R Sbjct: 427 IQSMIPDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSEALMR 486 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + ++ T+I+ S++ G + E LA + + + +K + Sbjct: 487 FEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKE 533 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 13/185 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64 R+ K NA+ + R G + + + V EFR++ G Sbjct: 125 RSIKINLTLHNAVAYMYAMRRGGAELMSIFYALSENAPIYGEVALEFRQITRDVDYFGSD 184 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAKVQAL 122 + ++ + P ++ F + + GG+LSE LA+ R+ ++ R K + L Sbjct: 185 MLTAMRHLSSTTPSAKLKDFLEDLLSVIESGGDLSEFLASRVRLYQEEARFEQKQFLTLL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SM A++ + + P + ++ ++ L V A M IG + + Sbjct: 245 SMVAESYVTLFVAGPLFLIIIMVVMG------MMGGSAVLQLSLVVYAIMPIGSFI--FI 296 Query: 183 INFDV 187 + DV Sbjct: 297 LLIDV 301 >gi|313902412|ref|ZP_07835815.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467343|gb|EFR62854.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 300 Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+ I + R GL + ++ V P+ + R G L + + + + Sbjct: 159 LPGWLEDIALAARGGLSLRQSIEVANDVGEGPLVDDARDAFARIRAGQPLRQPLLELAQL 218 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 P EV+ + G L + L R++R Sbjct: 219 YPHPEVTVALRTLVEAEVRGLPLPQTLDEHVRLMR 253 >gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL B-59395] gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL B-59395] Length = 265 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 10/176 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLGLSLSES 68 AL ++ + G PV A V E R+ LG Sbjct: 90 RQLIAALAVMSAELSVGAPVVQACRAAAADLARIDHDGAVGPELARMAARAELGGDPG-- 147 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 V + +V + G + + LA L L R++ A+ +A +A Sbjct: 148 -PESATRAGP--VRRLARSWAVSLEYGLPVGDVLAALREDLVSRQDFAARTRAGLAGPRA 204 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A ++ LP L VL+ G +LL V A + G++ + + Sbjct: 205 TAVVLAGLPVVGLVLGQAMGAHPARVLLESRIGGVLLVVGTALSVAGVVWADRIAD 260 >gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus assembly [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E + + + + E+S +++ GG ++L L +++ DR+ + Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + AK S ++ L + L+ PG++ + Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288 >gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7] gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7] Length = 298 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66 + KF + P AL ++V S+ +G V +A+ ++ + + V+ LS Sbjct: 81 KMDKFDQNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + +I + GG L++ L L++ L D +N+K+++ +++ Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSVTANG 200 Query: 127 -KASAWIIGSLPFCVSTLV 144 I+ + + L+ Sbjct: 201 LAVGLIILCGVIPATAGLI 219 >gi|314956949|gb|EFT01079.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] Length = 227 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 43 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 102 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + S Sbjct: 103 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 162 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + + ++ L P G +L+ VA +I ++ M Sbjct: 163 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 210 >gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117] gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117] Length = 224 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 54/170 (31%), Gaps = 8/170 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFR--RVIETQHLGLSLSESISRMVR 74 + + +R+GL A+ + + + + + + +++ Sbjct: 51 VIRELSALLRSGLSFYPAIDALLDAEEEHGKIVGALKELQATHRLNNSAPRGDALDG--- 107 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 V + + ++ G +L++ L L+ L + + A KA+ ++ Sbjct: 108 -NQSPAVQRLHWCLELSARSGASLADVLERLAEDLENALVAQQAFDAAMAGPKATIKLLT 166 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP + + + + + + A + + + ++ Sbjct: 167 WLPLVGFGFGMLLGIDVLGTIASSWAAQLSVLIGAVLWIANRIWCQRLMR 216 >gi|269217518|ref|ZP_06161372.1| type II secretion system protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212453|gb|EEZ78793.1| type II secretion system protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 186 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 39/100 (39%) Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 V + G ++ L + + D A +A KASA ++ LP L Sbjct: 81 VAVCRLTRATGAPAADVLDACAAGITDAAESAAARRAALAGPKASARMLAWLPLLGLFLG 140 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ L++ G LL + AF +GI +R ++ Sbjct: 141 SLMGTDTLDFLLSAGLGRTLLALGLAFEALGIFWVRRLVR 180 >gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 635 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 8/179 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ IK+ K P + ++ AG + A + ++ P+ + E Sbjct: 405 LRKWIKE-DEKLSAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEARPPLSKYVKVFAEMLD 463 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S + + R P ++ + ++S + G +++ L +L L R N K + Sbjct: 464 RGISRDRAFQWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELM-RLNAFRKER 522 Query: 121 ALSMEAKASAWIIGSLPF-CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ +L F ++ + G L G A + +G + Sbjct: 523 DSVAKTYGGMMVLAALLFLGIAVAISAMLLGQFEKL-----GQATTAAAGSGRSLGFSI 576 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 1/144 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I R + ++ +AG+ + +AV +V + EF R+ Sbjct: 164 LKGKISSRREDIDFNLHTLYITLLGFAKAGISIMEAVKELVTMDLGEISKEFARIYYAVR 223 Query: 61 LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +L ++ + P +++ I + GG+L + L + + Sbjct: 224 YGNTTLKAAMLEVAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTE 283 Query: 120 QALSMEAKASAWIIGSLPFCVSTL 143 +E A ++ SL + Sbjct: 284 YLKKLEMIAEVYLTVSLAIPTMVV 307 >gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 213 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 1/167 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++VR +RAG A ++ ++ PV R V L ++ + R L Sbjct: 43 ALELVVRELRAGAHPVRAFSIAADETGGPVAVALRAVAARSLLVAEVTAGLLAATRSSAL 102 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 103 PAYWERLGVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 162 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L+ G LL V G++ + + Sbjct: 163 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 209 >gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1] gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1] Length = 330 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESIS 70 D+ P +D++ GL + ++ VI + E G + +S++ Sbjct: 180 DEMPLFVDMLRLLQGVGLSLDQSMQVITHDFTSMLPVLSWELGVAQRQFAAGRTREQSLA 239 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ +++ ++ + GG + E L LR+ + + + + K + Sbjct: 240 RLTTSFDNEDLRAIVRLLIQVDKHGGAVQEPLRLFGDRLREGRRATLRERIGRLTVKMTG 299 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 +I +L + L+ PG M V+ Sbjct: 300 VMIVTLLPAL--LIVTAGPGIMTVV 322 >gi|288931798|ref|YP_003435858.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288894046|gb|ADC65583.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 640 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 65/162 (40%), Gaps = 6/162 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K K + P + + +G+ + + + ++ + + EF + + LG Sbjct: 423 LKNKILRKAEEKLPEFFEELAMLNESGVSIFEGIKLVAKSEAGILSKEFEGISRSVELGE 482 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISV---QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +++S+S++V + F+ + + + ++ +A +SR + + + K++ Sbjct: 483 PITKSLSKLVVRIKSD---IFAKAVPIAVKALETSTSIKDAFITVSRYVDSELSFRKKLK 539 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + M A ++ + V+ L+ + + + G Sbjct: 540 SNLMPYVAIIYLTVLVFLFVAYLLISKFLVTFSGMSVNFMGI 581 >gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1] gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1] Length = 306 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 5/154 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLG 62 + R + D P A+D+ GL A+ + S R G Sbjct: 145 RRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRDLLGG 204 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + R+ + + ++ F+ + Q+G ++SE L + +R + + Sbjct: 205 MRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RREKSMA 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ A+ +I + + L + + L+ Sbjct: 262 FAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295 >gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 306 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 5/154 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLG 62 + R + D P A+D+ GL A+ + S R G Sbjct: 145 RRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRDLLGG 204 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + R+ + + ++ F+ + Q+G ++SE L + +R + + Sbjct: 205 MRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RREKSMA 261 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ A+ +I + + L + + L+ Sbjct: 262 FAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295 >gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599] gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 304 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K+ A+ + P I+ V AG+P+ AV + + E + + Sbjct: 149 LDRVDKRAKAEIREQVPIFFSIVQSLVEAGMPLQQAVKQTARRFDARLGRELASLEMGEK 208 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +++ + + ++ + ++ + G ++S+ L+ ++ +A Sbjct: 209 RHGNWRKALEELAFRWEVDSLTTIALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATH 268 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + ++I + + LV P ++ + Sbjct: 269 MNRLNIRLLPFVIMLMGLPLLFLV--MGPAFIGI 300 >gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A] gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 383 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 1/108 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESIS 70 + P AL + G D + + + + E +V+ LG + ++S Sbjct: 201 IQHEIPFALSYMSVLASGGSSPLDVIRRVAAEDYGEISRELSKVMYRIDALGEDGNTAMS 260 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +++ + + IS Q GG L L S+ L + + K Sbjct: 261 YLIQNTSSEHLRAVCIDISNAMQAGGGLQAYLELKSKELMEMRRQAQK 308 >gi|304405119|ref|ZP_07386779.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] gi|304345998|gb|EFM11832.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9] Length = 311 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 7/156 (4%) Query: 33 VSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 + A+ V + P+++ F ++ + S+ + ++F+ ++ V Sbjct: 154 IRHALQRTVEERRLPAPMQAVFEQLYRNLSVKGDDEASLRVFAAALGHVWGNYFANILRV 213 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 G +S++L L +R + + ++ +E + + + F + +P Sbjct: 214 ALSEGNPISDSLRELLTDMRRARRANEQERSKLLEIRIANFTPILFLFLFIGINLHYNPD 273 Query: 151 -YMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181 + DP+G L L + ++GI + R Sbjct: 274 SAYRYYVLDPKGRDLVLNSLVLIFGSFVMGIWLSRR 309 >gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM 14863] gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 273 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D P L + +G+ + A+ ++ P+ E R + +G ++ M Sbjct: 127 QRDLPYFLFTLAVLAESGMQLLPALDHYARNAAAPLGREVRSALAEIRMGQPPGMALLEM 186 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++++ + + G L+ AL + DR+ + Q +A Sbjct: 187 AQRLDVRDLTRAVGALVQTMEKGTEGLAAALRAQAAEAWDRR--RRLAQEAGAQASVKLL 244 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN 157 + L + L P L Sbjct: 245 VPLVLFVLPAVLAMAAGPAIYAFLTQ 270 >gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 256 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 1/130 (0%) Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G ++++ + V + V G LS L LRDR Sbjct: 1 MARAVSAGERPGDALALVSVRAG-PAVRTVAAAWQVAEAAGAALSPVLRGAGASLRDRAE 59 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +V+A +A++ ++ +LP + + + G LL Sbjct: 60 TAREVEAALSGPRATSRLMTALPLVGLLMAAGLGIDVLGAITGSLIGWGLLVAGVGLTFA 119 Query: 175 GIMVMRLMIN 184 G M ++ Sbjct: 120 GRAWMSRLVR 129 >gi|333025387|ref|ZP_08453451.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071] gi|332745239|gb|EGJ75680.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071] Length = 275 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG ++A+A V + ++ G + ++ + R + + Sbjct: 104 LLAGEVRAGSGPAEALAHTVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 162 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 163 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 222 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 223 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 265 >gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM 7109] gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109] Length = 386 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 31/203 (15%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----------VRSEF 52 +++R + D ++ R V AG V+DAV + + Sbjct: 31 RVQRRQLELFRDLADSC---AREVAAGARVADAVESAAADCEGDEADAEGDTGTRLGGQL 87 Query: 53 RRVIETQHLGLSLSESISRMVR------YMP-----------LQEVSFFSTVISVQSQLG 95 V LG + ++ Q+V F + + + G Sbjct: 88 ALVAAQVRLGALPTAALRDRGEVGSEGDRDGASTGNGSAELVAQDVEEFCELWELAERTG 147 Query: 96 GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ L + K A A+ + ++ ++P + +L Sbjct: 148 MSFAPLADSIVADLEAHSAQQEKTAAAMAGARLTEVLLLAMPVGAVGIGQSMGLDPGGIL 207 Query: 156 INDPRGHMLLGVAAAFMLIGIMV 178 G LL V A G++ Sbjct: 208 FGSVIGLGLLLVGAMLACTGVLW 230 >gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 253 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG PV +V + P+ RV LG +E+ S + +P E Sbjct: 126 MRAGAPVDRSVLAVAEALDGPLAERLARVGRLLRLGAEPAEAWSTLAA-VPGAE-RLVGA 183 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + G +L+ AL L+ LR + A+ + ++ I+ L C Sbjct: 184 ALR-SATSGASLAGALTRLADDLRADRTTAAE----ATAQRSGVLIVLPLGLCFLPAFIL 238 >gi|302520916|ref|ZP_07273258.1| integral membrane protein [Streptomyces sp. SPB78] gi|302429811|gb|EFL01627.1| integral membrane protein [Streptomyces sp. SPB78] Length = 255 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG ++A+A V + ++ G + ++ + R + + Sbjct: 84 LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQASRVPGAEGL 142 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L R L ++ +A + A A+A+A ++ +LP Sbjct: 143 VGLAACWHVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 202 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL G + L + + G+ ++ Sbjct: 203 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 245 >gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM 16841] gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM 16841] Length = 344 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KR +FP + + AG+ VS A + + E +RV+ Sbjct: 191 VNAVVSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEGTLYKEMKRVLVDFD 250 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S E+ S+ + + +T I G + L R L D ++ K Sbjct: 251 NNVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLF---RQLNDESWLEHKHN 307 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147 A M K + ++ ++ Sbjct: 308 ARRMGEKIQSKLLLPTMLMFGGIIILI 334 >gi|319791843|ref|YP_004153483.1| general secretion pathway protein f [Variovorax paradoxus EPS] gi|315594306|gb|ADU35372.1| general secretion pathway protein F [Variovorax paradoxus EPS] Length = 412 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 9/155 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ +P R+ + + G + ++S +E Sbjct: 82 LAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEVNAGSPFARALS-----AHSREF 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S T + + GNL L L+ L +R+ ++ K+ A A + V Sbjct: 137 SPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLVG---AALYPAIVTLVAIVIVI 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 LV + P V R L + G+ Sbjct: 194 FLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGV 228 >gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain protein [Blautia hansenii DSM 20583] Length = 402 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58 + D+P+ + +V +RAG + A+ I E R + Sbjct: 248 RKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHAKERSAYEEIVRTCKE 307 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117 G+ +E+ R + + S ++ + G NL E L + D + A Sbjct: 308 MQGGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 367 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 KV+ K ++ + + L+ P + + L Sbjct: 368 KVRGEEASTKL---LLPMVLQLIVVLMILMIPAFFSFL 402 >gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 F + LD++ S+ AG V +A+ S DP R ++ L G + Sbjct: 160 RRDFRHVVGSYLDLVAMSLSAGRGVPEALDAASSLSDDPAMLRIRDALDVARLRGDTPWA 219 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEA 126 ++ R+ + + E+ S +++ ++ G + E+L + +R R A+ + E+ Sbjct: 220 ALGRLGTQLRIDELRDLSAALALVAEDGAKIRESLGARASSMRRRDLSDAEGKAGENSES 279 Query: 127 KASAWIIGSLPFCVSTL 143 A ++ ++ F V + Sbjct: 280 MLVAQLVVAMGFIVFLV 296 >gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 304 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 + F LD++ ++ G + +A+ S +R + + + G+S Sbjct: 156 KRRDFRRVLGAYLDLVAMNLAGGRGLPEALMAAAEVSDGWALRRIRDALTDARVTGISQW 215 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S++ + + E+ +++ ++ G + E+LA + +R R+ + + + A Sbjct: 216 NALSQLGDALDVDELKDLGAALALVAEDGAKVRESLAARAETMRHRELSEIE---GAAGA 272 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K+ + ++ + C +V+ P V+ Sbjct: 273 KSQSMLVAQMLLCAGFMVFLLYPAMARVM 301 >gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 300 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 1/174 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I+ + P AL + +G D + I + + +EFR+V+ Sbjct: 108 LQNQIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIAREDYGQISNEFRKVLFRVD 167 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG + +++ +V+ P I+ GG L L S+ L + K Sbjct: 168 ILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGGLKSYLETKSKELMAIRRQTYKE 227 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 S+ ++ G + ++ G + + + H + ++ Sbjct: 228 FVESLAVFGEGYLGGVVMTITLAILGVVISGALGIQLGPFSAHDMFNYLIYLLI 281 >gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 53.2 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 2/153 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQH-L 61 +K R K L++ P+ + + +GL + + I ++ + + + R + L Sbjct: 115 RVKNRATKLLEEIPHFIGYMSTLATSGLSLEEIFKAIAKEETDEDIVKDARFITRNIEIL 174 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ ++ P S + SQ GG+L E +++ + K M + Sbjct: 175 GMDLITAVKDLINRTPPGPYSELLEGAIITSQSGGDLKEYFNATAKVQLEEKKMLLQKTT 234 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 S+ + A + I + F + ++ + G M+ Sbjct: 235 ESLGSVAEIYTILLIVFPLLAVIMLSIMGIMSP 267 >gi|89897406|ref|YP_520893.1| hypothetical protein DSY4660 [Desulfitobacterium hafniense Y51] gi|89336854|dbj|BAE86449.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 309 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 5/175 (2%) Query: 9 TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66 + AL II + +R+ + AV + + PVRS F + L L Sbjct: 128 KKNIAAELETALSIITTAYLRS-EDILTAVEESIQYLNPPVRSVFAGFLTQVKLVNPDLD 186 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + + I+ +L L + L D + + A+++ L E Sbjct: 187 KALHAMKPKIDNDVFHEWCDAIAACQHDR-SLKTILTPIVSKLSDMRIVNAELEYLVFEP 245 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180 + I+ L +++F + + + L++ G ++L V AA + I V+R Sbjct: 246 RKEFIIMALLVAGNVPIMFFLNKDWYHTLMHTAVGQIILAVCAAAIFISTAFVIR 300 >gi|282863648|ref|ZP_06272706.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282561349|gb|EFB66893.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 294 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +V +RAG A+ G+ + + S V+ G + E++ R + ++ Sbjct: 130 VVGELRAGREPGRALLTAGGEGA--LGSAEAAVLAAARFGGDVPEALRRASLVPGFEGLA 187 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + V G L+ LA + LR + + +++A A ++ ++ LP Sbjct: 188 GMAACWRVAVDGGAGLATGLARIEHALRAERRGREELRAQLAGAWSTVVVLALLPVVGLG 247 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + VL++ P G L + G+ ++ Sbjct: 248 LGAALGADPLRVLLHSPGGLACLVAGSLLEAAGLFWATRIVR 289 >gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 208 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + D P A+ ++ +R GL +AV + P+ +E R V LG + + Sbjct: 63 MVADLPIAIGLLAACLRGGLSWDEAVEAVCDAVGGPLGAELRAVAARVRLGADPAAAWLA 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 + + E++ + ++ G L+ AL L Sbjct: 123 LAQE---PELAPLARTVARAVDSGAALAPALTRL 153 >gi|118475095|ref|YP_892177.1| type II secretion system protein [Campylobacter fetus subsp. fetus 82-40] gi|118414321|gb|ABK82741.1| type II secretion system protein [Campylobacter fetus subsp. fetus 82-40] Length = 413 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + D++ ++ ++D ++ F V + + G+S++ES++ Sbjct: 79 IRQLSVMTNAGISIHDSIKEVIKSTTDKRLKLIFENVNDDLNAGMSITESLNLYSD---- 134 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E+ + + GN++E+L L+ IL++ + + K + + +I ++ Sbjct: 135 -ELGNVVIAMVRLGEESGNMAESLQKLAEILQEIWDNQRKFKK---AIRYPTLVICAIAI 190 Query: 139 CVSTLVYFTSPGYMNVL 155 L+ P + ++ Sbjct: 191 AFVLLMVLVVPTFRDIF 207 >gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii DSM 10542] gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii DSM 10542] Length = 416 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 19/172 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AGL + + ++ Q+ + P+ V GLSLS ++ + P Sbjct: 86 MATMVSAGLSLIRTLGILADQTENKPLAKVLGIVRSDVETGLSLSNALVKHPEAFPP--- 142 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 I + GG L ++L + + ++AKV++ +I + + Sbjct: 143 --IMVNIVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSAMTYPVVVLFIAIAAVIGML 200 Query: 142 TLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + P VL++ +L V ++GI R Sbjct: 201 LFIVPIFKDMFEGLGGELPAPTQFLVLLSSWMKWLLPLVLVVSAVVGIWWQR 252 >gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 [Rhodococcus erythropolis PR4] gi|226183109|dbj|BAH31213.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 262 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++++ + G + A +V + S V + FR LG S + + + + + Sbjct: 95 LEVLIAELSVGAHPAVASSVAGEECSGEVSAVFRSAGARARLGGSAAAAFA-VPDSCIER 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E S +V V Q G L+E L + + R+ + + +A A+A+A ++ LP Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + VL G +LL + A + G++ + Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257 >gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length = 374 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + + +R K L + + +D I R V AG +AV + +R + Sbjct: 24 RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHQLDVACVRVR 83 Query: 61 LGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG + + F + + G L+ + + +K Sbjct: 84 LGAAPGAGAAGAAPGSDAPSFLAHLFHI-WGISRRHGVGLATLARAHVTDIDAQLAHISK 142 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + A+ + ++ +LP L + G + L+ + G +L V + G + Sbjct: 143 STSATAGARLTVTVLLALPVGAVALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202 >gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC 43243] gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC 43243] Length = 444 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 15/165 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDP----VRS 50 + ++ R + D+ + + AG+ V A I V Sbjct: 281 RKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWEKIALDYNNKMKDMPKEKYHAVYE 340 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRIL 109 E + G+S + + + R ++E T++ + G LS L S Sbjct: 341 EMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTLLEQNVRKGTRGLSVLLEQESE-- 398 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + E + ++ + +V P M+ Sbjct: 399 -EAFEQRKNLAKQLGEEAGTKLLLPMILMLAVVMVIVMVPAMMSF 442 >gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus (Silurana) tropicalis] Length = 308 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 9/148 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ D + + + G S + ++++ R E Sbjct: 78 LAGLVASGLPLERALTALADEAEDERQHHLVAALRAEVNAGSSFARALTQHPR-----EF 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L +R+ ++AK+ A A + V Sbjct: 133 SDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIG---AALYPAIVTVVALVIVL 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 LV + P V R L VA Sbjct: 190 FLVGYVVPQVAGVFAGTKRALPWLTVAM 217 >gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4] Length = 408 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-------PVRSEFRR 54 K K+ + + D+P L V AG PV A V + PV E R Sbjct: 251 KEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQVVDAESKNTVLIHPVYREMRT 310 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113 + G + R + L F++++ GG +L L + Sbjct: 311 ALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVSTGGKDLRRLLE---EEMETAF 367 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ E ++ +I +V +P ++++ Sbjct: 368 RQRKELALRKGEEASTKLLIPMFLMLGVVMVMVVAPAFLSL 408 >gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus voltae A3] gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3] Length = 294 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62 L + + KF + P AL I+V S+ +G V +++ I+ V F ++I Sbjct: 73 LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +S+ + + + +I + GGNL+E+L L++ L D N+K ++ ++ Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSV 192 Query: 123 SMEAKASAWIIGSLPF 138 + + II + Sbjct: 193 ASNGLSVGIIILCIMI 208 >gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp. P08] Length = 147 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+R A P L ++ ++ AGLP+ AV + P + RR+ G+ Sbjct: 1 MKQRRAA---QLPETLLMLSSTMEAGLPLRAAVTTVAESLEGPCAEDLRRLASALAAGVP 57 Query: 65 LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 S++ + + P Q+ +S G +SE L+ + L+ Sbjct: 58 DSKAWNDLAAVTVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQ 100 >gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814] gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814] Length = 376 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--------QSSDPVRSEF 52 ++ ++R + ++D+P + + + AG+ V A I ++ V E Sbjct: 215 IRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRKITEGYMKEKEDENERYVYEEM 274 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRD 111 R+ G++ +E R LQ ++S + G LSE L S + Sbjct: 275 RQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQNLRKGTKGLSELLKLESIQAFE 334 Query: 112 RKNMKAKVQALSMEAKA 128 + +AK K Sbjct: 335 ERKARAKRLGEEAGTKL 351 >gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 615 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + + I+ R P L I G+ + A+ +I + + SE R V + Sbjct: 402 LSYEIRSRYVRNVEKQLPELLREISDMRDIGMTLQSAITMISSSKNSVLSSEIRIVSDEM 461 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SLS ++ RM + L V +++ S++ + E LA L MK+K Sbjct: 462 KYGSSLSGALVRMEERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSK 520 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64 R + D P A+ + ++ + + + D + V E ++ L G Sbjct: 114 RKNRIDMDLPYAITYMQ-ALSSTIVLYDIFRSVYEAEDLYGEVSRECGIIVRDVELFGED 172 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +V P + + + + GGNL+ S R+ + + + Sbjct: 173 LLSAMNYVVTITPSERFKELIGDLILVYRSGGNLTNFFNAKSESYREIARQELEALLQFL 232 Query: 125 EAKASAWIIGSL--PFCVSTLVYFTS 148 E A ++ + P + ++ + Sbjct: 233 EMIAEIYVTAFVAGPIAIIIMLVAQN 258 >gi|308271306|emb|CBX27914.1| hypothetical protein N47_G32380 [uncultured Desulfobacterium sp.] Length = 411 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 27/182 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ + A +++ + +R R+I G ++++ R+ P Sbjct: 82 MSTLLRSGMRIDKAFDILIHATEKQDLREVLLRIIADIKAGKGVAQAFDNTGRFGP---- 137 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + S+ G L EA N++R LR + +A+V+ A+++ + Sbjct: 138 --LVISMIHVSEAVGELREAFENIARYLRFQIQFRAEVRNAMS---YPAFLVFASGVTFF 192 Query: 142 TLVYFTSPGYMNVL----INDPRGHMLLGVAAAF-----------MLIGIMVMRLM--IN 184 + F P + ++ P L + + +++G +V+R + + Sbjct: 193 VIFQFIVPRFFSIFGPQGTRLPLPAKALYAISGWFNFTSIGIMAGLVVGFLVLRRLNPVK 252 Query: 185 FD 186 Sbjct: 253 IK 254 >gi|314972765|gb|EFT16862.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] Length = 288 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271 >gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain protein [Bryantella formatexigens DSM 14469] gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain protein [Bryantella formatexigens DSM 14469] Length = 490 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVR---SEFRR 54 + + R + L D+P+ L + + AGL + +A I + D VR E Sbjct: 333 QQAQEHRRRQMLMDYPDLLFKLSMLLNAGLTMQNAFFKIALEYRDRETPEVRFAYEEMLT 392 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRI-LRDR 112 G+ + S R + + T++S Q G L++ L + + +R Sbjct: 393 SYYEMQSGVPEARSYENFGRRCGVGSYNKLGTMLSANLQKGSQGLAKLLQEEAAFSMEER 452 Query: 113 KNMKAKV 119 M K+ Sbjct: 453 SQMARKL 459 >gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51] gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 309 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 3/150 (2%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91 + AV + + PV S F+ + L ++ ++ + + + + + Sbjct: 152 ILTAVEENLPYLNPPVLSVFKGFVSRVRLVDPNVTAALHDVKMRIDNAVFHEWCDAL-IS 210 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 Q +L L + L D + + +++ + E + I+ L L+YF + + Sbjct: 211 CQHDRSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMVVLVVGNIPLMYFLNQDW 270 Query: 152 MNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180 + L++ P G ++L + AA + + V++ Sbjct: 271 YHTLMHTPLGQIVLTICAAVIFVSTAFVIK 300 >gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium tuberculosis T85] gi|289715376|gb|EFD79388.1| predicted protein [Mycobacterium tuberculosis T85] Length = 241 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 1/155 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 86 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 145 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 146 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 205 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L ++ L+ G LL V Sbjct: 206 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLE 240 >gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 356 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 4/141 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ L ++ ++RAG+ ++ + + + + G + E++ Sbjct: 111 KIEKVLPDMLLLMAANLRAGMIPENSFISSMKPEFGKLNNLLNKAAIETQAGKTFPEALL 170 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQALSMEA 126 M + +IS + G L L NL+ L R +M+A+V++ S+ Sbjct: 171 EMNDLTSSEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKSYSLFI 230 Query: 127 KASAWIIGSLPFCVSTLVYFT 147 +A + G L + VS+ + Sbjct: 231 FIAATLAGPLLYGVSSFLIGI 251 >gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC 7942] gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC 7942] Length = 410 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ A+ ++ Q+ +P +R +++ GL+LS+S+ + + Sbjct: 77 LSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKV-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG L + L LS++L D ++ ++++ A I + ++ Sbjct: 132 DGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVIAILVFLGMT 191 Query: 142 TLVYFTSPGYMN 153 + T G Sbjct: 192 IFIIPTFAGIFE 203 >gi|314929716|gb|EFS93547.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] Length = 288 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271 >gi|25029119|ref|NP_739173.1| hypothetical protein CE2563 [Corynebacterium efficiens YS-314] gi|259505885|ref|ZP_05748787.1| bacterial type II secretion system protein F domain protein [Corynebacterium efficiens YS-314] gi|23494406|dbj|BAC19373.1| hypothetical protein [Corynebacterium efficiens YS-314] gi|259166559|gb|EEW51113.1| bacterial type II secretion system protein F domain protein [Corynebacterium efficiens YS-314] Length = 94 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + ++ F + G ++++ L + +R ++ +A+ +A + K Sbjct: 4 LDGLATRTTVPDLRRFVRAVVQADAYGISIADVLRTQADEMRLKRRQRAEEKAQKLPVKV 63 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A ++ + + +V P M+++ Sbjct: 64 LAPVMLCILPVLFIVV--MGPAAMSIV 88 >gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 262 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + P A D++ + AG +A + PV + R LG S + Sbjct: 114 RKEAARQLPLAADLMAACISAGASPREAAEAVGESLGGPVGAGLARTAAQLRLGAEPSPA 173 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G ++ ++ L+ LR + + + Sbjct: 174 WGCFGE---IPGAEPLARCLERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLI 230 Query: 129 SAWI-IGSLPFCVSTLV 144 +A + + LP ++ V Sbjct: 231 TAPVGLCFLPAFLAVGV 247 >gi|229494787|ref|ZP_04388543.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229318283|gb|EEN84148.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 262 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 1/164 (0%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++++ + G + A +V + V + FR LG S + + + + + Sbjct: 95 LEVLIAELSVGAHPAAASSVAGEECIGEVSAVFRSAGARARLGGSAAAAFA-VPDSCIER 153 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E S +V V Q G L+E L + + R+ + + +A A+A+A ++ LP Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + VL G +LL + A + G++ + Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257 >gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759] gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759] Length = 434 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 3/155 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 + K+R + + D+P +D ++ + AG+ + + ++ + E R + Sbjct: 282 LSKQEKERKQQLMIDYPELVDRLILYLGAGVTIRGSFVRMVQNDDESALMKELRYTLNEI 341 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+ E+ M + + +++S G + + ++ + + ++ Sbjct: 342 QAGIPEGEAYYNMGHRINIPVYMKLMSMLSQNVSKGTK--DIMIMMAGEEQAALQTRKEL 399 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 E + + + +V P M+ Sbjct: 400 ARKKGEEAGTRLLFPMIVLLGVVMVIVVLPAVMSF 434 >gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] Length = 194 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++++ K+ L+ P +DI V++G+ + A++ + + + ++ + Sbjct: 51 IRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYTAKKFILINPDLSLIVTKITK 110 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + L +I + E+ F + + G + + L L++ +R+ + + Sbjct: 111 RAEIN-GLESAIKEFQQLSTETEIKMFCSALQYSISFGSTVYDQLIKLAQDMREMQLLVT 169 Query: 118 KVQALSMEAKASA 130 + + + K ++ Sbjct: 170 EEKNSKLSTKLTS 182 >gi|76803231|ref|YP_331326.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76559096|emb|CAI50694.1| transmembrane protein (homolog 5 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 568 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGL 63 + RT F + P+AL ++ R V G+ V AVA + F Q L + Sbjct: 339 ARDRTDAFDESLPDALYLVGRRVSDGVSVERAVADAAEELDGVAGEVFTDAARRQRRLRV 398 Query: 64 SLSE-------SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + ++ + F + + G L E +L + R + Sbjct: 399 DIETAFRGSHGALEELTSRRAESAARLFGVAANAGAPAGRALIETADHLDELRRVETEAR 458 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLV 144 + ++ +A G L + + Sbjct: 459 RDLGQVTTTLSNTAAFFGPLVGGATVAL 486 >gi|313837838|gb|EFS75552.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] Length = 283 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271 >gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 217 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ LD++ +RAGLP+ A + + D RS R+ + LG S+ + + + Sbjct: 73 VEQLAFDLDLVAICLRAGLPIPRAFELAARATQD--RSGLGRLGRSLALG-SVDNAFAGV 129 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 P+ E +++ G L+ L+ L+ + Sbjct: 130 QD--PVGEHRTVVSLVEFSRSTGVALAPLLSGLASDM 164 >gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122] gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122] Length = 212 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 3/145 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69 + D + +RAGL A A+ + D + R G+ + +E++ Sbjct: 69 RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDDELAGVCRDAHRAWSTGVLTRAEAL 128 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + F+ + + G + L LSR + K++ +A Sbjct: 129 ASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSR--ESSGAYRTKIEERVAKAPIE 186 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNV 154 I + + L+ P +++ Sbjct: 187 MLIPTATLILPAMLIVILGPVLLDL 211 >gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC 6301] gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC 6301] Length = 410 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ A+ ++ Q+ +P +R +++ GL+LS+S+ + + Sbjct: 77 LSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKV-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG L + L LS++L D ++ +++ + + Sbjct: 132 DGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMK---SAMTYPMAVFVTAILVFL 188 Query: 142 TLVYFTSPGYMNVL 155 + F P + + Sbjct: 189 GMTIFIIPTFAGIF 202 >gi|258510584|ref|YP_003184018.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477310|gb|ACV57629.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 V AG V + + + P+++ F R + LS+++ + P S+ Sbjct: 119 VEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSVADWLRYTADTTPSNYWSYVCN 178 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + GG+L ++R L+ R+ + + + + A + +Y Sbjct: 179 GVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRKEATQLLLAMLVSPAALYL 234 Query: 147 TSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ L+ +P +L VA ++ R M Sbjct: 235 MFRRTLDNLMQAEPFTQVLFAVALVGYVVLFWFARRMAR 273 >gi|257793108|ref|YP_003186506.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479800|gb|ACV60117.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 V AG V + + + P+++ F R + LS+++ + P S+ Sbjct: 119 VEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSVADWLRYTADTTPSNYWSYVCN 178 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + GG+L ++R L+ R+ + + + + A + +Y Sbjct: 179 GVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRKEATQLLLAMLVSPAALYL 234 Query: 147 TSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ L+ +P +L +A ++ R M Sbjct: 235 MFRRTLDNLMQAEPFTQVLFAIALVGYVVLFWFARRMAR 273 >gi|228912546|ref|ZP_04076211.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL 200] gi|228847116|gb|EEM92105.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL 200] Length = 307 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 112 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 172 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 231 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + L+ S L G + L V Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPILIMLMSKEAYGFLAGSMMGKIALAV 282 >gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A] gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 667 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 60/151 (39%), Gaps = 4/151 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ + D P L + G+ ++DA+A+ + +RSE + + +L Sbjct: 455 RKIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGKLRSEIKCTVADIRWNSNLE 514 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R + T+I+ S+ G++ + ++ ++ +++ ++ Sbjct: 515 EALKRFEARIRTNMTRRSLTLIAKASESTGDIHKVISTVADD----ADIEKNLKKERSAE 570 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 I + FCV ++ + + ++ Sbjct: 571 MFIYVFIIFVTFCVFLVIVYVLAAFFLPALD 601 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 13/181 (7%) Query: 8 RTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61 R P+A L ++ R G+ + D + + S EF +I Sbjct: 154 RKRAINATMPHATAFLYVLQRG--GGMTIFDIMKSLSKHSHLYGTASHEFGNIIRDVEYF 211 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK--- 118 G L +++ P ++ + GG+++ L N + + + N + K Sbjct: 212 GKDLQDALWNAADRTPSEQFKDLVDGLISIVSGGGDITLYLKNKTDLYKSNANKEHKRFL 271 Query: 119 -VQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L E + +++G L + ++ G L G + G A + + + Sbjct: 272 DTLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGATNLYILVYGAIPFGTAIFLVFLDM 331 Query: 177 M 177 + Sbjct: 332 L 332 >gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens Pf0-1] Length = 296 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 5/154 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 + +R + + + ++ AG+ V A+ V+ + + E R V+ Sbjct: 136 LAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQALRVLSHEGQTLLPVLTQELRLVLA 195 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL L E +++ R + + E + ++ Q GG ++L L ++L DR+ + Sbjct: 196 RVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQGGGAMKSLLALKQLLDDRRLTRL 255 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + M AK S ++ L + L+ PG+ Sbjct: 256 QEYISKMSAKMSVVMMMFL--FPALLIVLAGPGF 287 >gi|328906785|gb|EGG26556.1| LOW QUALITY PROTEIN: type II secretion system F domain protein [Propionibacterium sp. P08] Length = 288 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%) Query: 16 FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ALD VR V A G + AV + ++ + +++ + E+ R Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + E +++ + S L ++ ++ R + +V+A + + + Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 I + + ++ ++ L P G +L+ A + ++ M Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271 >gi|251795114|ref|YP_003009845.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2] gi|247542740|gb|ACS99758.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2] Length = 311 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 75/190 (39%), Gaps = 9/190 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRS--VRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVI 56 ++ ++ +R + DF A+++ + V G V A+ V + P++S F ++ Sbjct: 120 LRAMLVQRQMQLQMDFLPAIELFYQCYLVTGGRQVRTALQRTVEERRLLGPMQSVFEQLY 179 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + S+ + +F ++ V G ++E+L L +R + Sbjct: 180 RNLSVRGDDEASLRIFSAALGHVWGDYFVNIMRVALAEGSPIAESLKELLGDMRKARRAN 239 Query: 117 AKVQALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--- 172 + + +E + + + + L F + V + + DP+G +L A + Sbjct: 240 EQERNKLLEIRIANFTPVLFLAFYIGINVRYNRENSYYYYLIDPQGRDMLLNAIVLIFAS 299 Query: 173 -LIGIMVMRL 181 L+G+ + R Sbjct: 300 FLMGLWLSRK 309 >gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 349 Score = 52.0 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 9/177 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + R PN + +G+ + +AV ++ G + R++ Sbjct: 124 LDFREQSRMRNLETALPNFFRDLAGMNDSGMTLPNAVHLVAGAEYGTLSPHIRKLDNEMS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E++ R + + +I+ S+ GG++SE L + +V Sbjct: 184 WGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTF-------EVV 236 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIG 175 L+ E + + I + T+ F ++ ++ G AA+ +G Sbjct: 237 NLAQERRNNMLIYVIIVIVSFTVFLFVIAVLVSSFLSTMATAGTAAQVTAASSKFMG 293 >gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 332 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 29 AGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 GL V +++VIV + + EF G + +S++R+ + +++ Sbjct: 195 VGLSVDQSLSVIVNDFTPVLPVLGHEFGVSTAVYARGRTREQSLARLSQGFDDDDLAAIC 254 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++ + GG + E L ++ +RD++ + K + + K + +I +L + + Sbjct: 255 RLLVQVDRHGGAVQEPLNRFAQRIRDKRRFELKEKIGRLTVKMTGVMIVTLLPALLIV 312 >gi|148241117|ref|YP_001226274.1| Type II secretory pathway, component PulF [Synechococcus sp. RCC307] gi|147849427|emb|CAK26921.1| Type II secretory pathway, component PulF [Synechococcus sp. RCC307] Length = 410 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 4/133 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + V AG+P+ ++ ++ Q P+ F+R ++ L ++ S+ +R P Q Sbjct: 79 MAALVSAGVPIVRSLEILAEQQKLPM---FKRALQRLSLDVNQGSSLGSALRRWP-QVFD 134 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 S + + GG L E L L+++L D ++ +++ I ++ ++ Sbjct: 135 ALSVAMVEAGEAGGVLEEVLKRLAKLLEDNAKLQNQIRGALGYPVTVLVIAIAVFLGMTI 194 Query: 143 LVYFTSPGYMNVL 155 + T G L Sbjct: 195 FLIPTFAGIFEDL 207 >gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis ANT/505] Length = 271 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60 +R + L +++ +RAG + + A+ V P+ E + + Sbjct: 109 RKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPLYKELKLFLFELS 168 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR--ILRDRKNMKAK 118 G + + + + + + ++ + S+LG L +A+ L+ + K Sbjct: 169 AGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEGLALKKNILLAKK 228 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V +M I+ P + + + + MNVL Sbjct: 229 VNKKAMHTTFP-IILICFPMFLVLVFFPAALQVMNVL 264 >gi|215447993|ref|ZP_03434745.1| transmembrane protein [Mycobacterium tuberculosis T85] Length = 217 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 1/155 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 AL+++V +RAG A ++ ++ PV R V LG ++ + R L Sbjct: 62 ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 121 Query: 79 QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + S G ++ + R + +R+ A+V A A+ASA I+ LP Sbjct: 122 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L ++ L+ G LL V Sbjct: 182 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLE 216 >gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1] gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1] Length = 591 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 10/179 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-----SDPVRSEFRRVIETQHLG 62 R +FP + V +GL A I S S + F ++ LG Sbjct: 97 RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKSAELSQRFILLVR--VLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + P + GG++++ L +R+L +K K+ A Sbjct: 155 RDPLTAFSMLAHRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIAD 214 Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178 + A++ + L T++YF + +++ P G L+ M+ G+++ Sbjct: 215 RLAGLLEAYLALVLLSMISLTVMYFVTVSFISAVPFGLSPIGLFLVLYVLIPMISGMII 273 >gi|258650977|ref|YP_003200133.1| Flp pilus assembly protein TadB-like protein [Nakamurella multipartita DSM 44233] gi|258554202|gb|ACV77144.1| Flp pilus assembly protein TadB-like protein [Nakamurella multipartita DSM 44233] Length = 270 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 ++F S+ + + G + ++ L D+ A + S +++ +LP Sbjct: 166 LAFLSSGWLLSRRHGVAFGRVVTAVADELSDQLAADQTRTAQLAGPRMSGYVMAALPLMG 225 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + VL+ P G++LL + A + G++ ++ Sbjct: 226 VVLGAGMGVDPVAVLLGSPLGNLLLVIGVALLCAGLLWSARIV 268 >gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 221 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLSESISRMVRYM 76 +DI+ + AGL A+ + + + + +G + +++ + Sbjct: 83 EMIDIVRLGLSAGLSFDAALELFCANRATSLARRMAQASLAWRIGSATRETALAGAATDL 142 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWI 132 + + F+ +S LG L+E LA SR +R + + K SA I Sbjct: 143 GARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLIPTSALI 202 Query: 133 IGS 135 + + Sbjct: 203 LPA 205 >gi|206972822|ref|ZP_03233744.1| membrane protein, putative [Bacillus cereus AH1134] gi|206731706|gb|EDZ48906.1| membrane protein, putative [Bacillus cereus AH1134] Length = 310 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGYLAGSMMGKIALAV 285 >gi|228950019|ref|ZP_04112207.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809666|gb|EEM56099.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 292 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 97 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 156 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 157 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 216 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 217 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSLMGKIALAV 267 >gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547] gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547] Length = 211 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +DD LD++ ++ +G V+DA+ ++ + +P+ R+V+ + G++ +++ + Sbjct: 69 VDDLAAVLDLMALALDSGCAVTDALELVADEVPEPLAGHLRQVVAARRWGVTGADAWKGL 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 + +++ G +E + + L Sbjct: 129 PSQWGP-----VAQALTLAQLAGAPPAETIRRAAADL 160 >gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 311 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 57/147 (38%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + +K+R + P +D++ G + ++ + + D + E + Sbjct: 147 LSSWVKRRRRAVDKELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ ++S +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLSSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 K + + K + ++ +L + ++ Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293 >gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM 14600] gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM 14600] Length = 464 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 13/161 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSE----FRRV 55 +K+R D+P+ + I + AG+ V +A+ I + E + Sbjct: 307 VKRRRENADRDYPSIISEIALYLSAGVTVKNALERISAAYEERRKQGQTGHEGYEALSLL 366 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114 + G+S ++ P S ++ Q G L+E + + Sbjct: 367 VRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNLQRGNRRLAELFEEEKQRAEEAGR 426 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ K + +I + L+ +P L Sbjct: 427 LRCKKLGDEASTRL---LIPMVGLLAVVLMILLAPALFMHL 464 >gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304] gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 614 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 68/180 (37%), Gaps = 7/180 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64 R K P+A+++++ + G+P+ + + + EF +++ + G Sbjct: 118 RRGKIDSSLPHAVNMMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIFGYD 177 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + P +++ F + GG++ E L S L + + ++ Sbjct: 178 MITAMKYVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETL 237 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A ++ + + L+ + ++ V A + +G +++ +I Sbjct: 238 QVYAEIYLALFIVAPLFFLIVLV----VFQMVGSGAMQTFKIVLFAMIPLGSLLLMWLIK 293 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + K + P + + AGL V +A+ + + E R++ G Sbjct: 400 KNRLLTKMEKELPEFMKQLASLNEAGLNVVEALRHLSESELGVLGREIRKIKREVEWGEL 459 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ ++ ++ + Q V+ T++ + ++ +AL S ++ +++ Sbjct: 460 ITSALEKIESRVRSQIVAKAITLLVKAIESTPSIRDALNTASMYSELEVEVRDRIK---- 515 Query: 125 EAKASAW-IIGSLPFCVSTLVYFTSPGYMNVLIND 158 A+ S + II L F V + M + Sbjct: 516 -AQMSMYTIIIYLAFAVFLYTAYILIQNMLTVFAS 549 >gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 247 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 8/146 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R L P LD+I + AG P+ A + + +P S R V +G S Sbjct: 98 RARREALLGQQPEVLDLIAAAQEAGSPLRRAAGEVAALAPEPSASVLREVDAHLRVGFSE 157 Query: 66 SESISRMVRYMPLQEVSFFSTV--ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +E+ + + + ST ++ ++ G +++ + + R+ +A + Sbjct: 158 AEAWQSLAD-----DPVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKART 212 Query: 124 MEAKASAWIIGS-LPFCVSTLVYFTS 148 + K+ ++ LP + V Sbjct: 213 VAVKSVGPMMACFLPAFILAGVVPIF 238 >gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 344 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 47/121 (38%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + I R K + I ++R+G+ + ++ + + + + Sbjct: 81 INYKIDDRKTKMEGMLSDYFQIASANLRSGIAMDRSLLLAARPEFKFFADDIKEMNRQIF 140 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + + + ++ + GG +++ L LS+ +R+++ M+ +V Sbjct: 141 SGQTMESGLKYLAGRYKSFTLDHAIRMMIEAQRYGGAMADLLDQLSKDIRNQQLMQKEVA 200 Query: 121 A 121 Sbjct: 201 G 201 >gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 545 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 73/186 (39%), Gaps = 10/186 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57 L +R + F + L I+ + G+ ++A + + + + + Sbjct: 62 LASRRARLYRLIFGHFLQIMSAELTGGMTFTNAFTGAIADLVLITGTRNRLMQQLCNASG 121 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L ++ + + +E + S+Q + GN++ + ++ D + +A Sbjct: 122 MLAAHLPAAQVLDELSNQSVCREAKPILKIFSLQLRNNGNMNNLCKFATTMVNDLNDTEA 181 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAAFML 173 ++ A S + A+I+ ++P+ +S ++ F++ Y G ++ L VA Sbjct: 182 QITADSNKQTVEAFIMAAMPYIMSAILQFSAGSYYAQASITTLGRVMKLASLFVAVTASA 241 Query: 174 IGIMVM 179 + ++ Sbjct: 242 LTFYIV 247 >gi|256389283|ref|YP_003110847.1| integral membrane protein [Catenulispora acidiphila DSM 44928] gi|256355509|gb|ACU69006.1| integral membrane protein [Catenulispora acidiphila DSM 44928] Length = 270 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 65/180 (36%), Gaps = 8/180 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R + + I + AG +A+ + + ++ G Sbjct: 93 VERRQTEII----ELCVTICSELHAGREAREALRDAAVGACPDLAV---HLVGPLGTGDD 145 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + + ++ + V + G ++ A+ LS LR + + ++ A Sbjct: 146 VVTVLRTAAGTPGREALAALAACWQVA-EGGAGMTAAIGELSDGLRAERAQRRELDAELA 204 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA ++ LP + + +L++ G L + AF+L G+M M + Sbjct: 205 GIRTSARLLAMLPVVGLIIGSGMGLSPIPMLLHTGVGETCLVLGIAFVLGGVMWMDRIAR 264 >gi|326943573|gb|AEA19466.1| membrane protein, putative [Bacillus thuringiensis serovar chinensis CT-43] Length = 310 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM 8271] gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM 8271] Length = 309 Score = 51.6 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 3/150 (2%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91 + AV + + PV S F+ + L ++ ++ + + + + + Sbjct: 152 ILTAVDENLPYLNPPVLSVFKGFVSRVRLVDPDVTAALHDLKDRIDNAVYVEWCDAL-IA 210 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 Q +L L + L D + + +++ + E + I+ L L+YF + + Sbjct: 211 CQHDRSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMQVLVVGNIPLMYFLNKDW 270 Query: 152 MNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180 + L++ P G ++L + AA + + V++ Sbjct: 271 YHTLMHTPLGQIILTICAAVIFVSTAFVIK 300 >gi|225871556|ref|YP_002752914.1| hypothetical protein BCA_A0067 [Bacillus cereus 03BB102] gi|225785496|gb|ACO25714.1| putative membrane protein [Bacillus cereus 03BB102] Length = 310 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037] gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037] Length = 300 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%) Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + V +V + +G L++ L + LR+ +++ V+ E A+A ++ LP L Sbjct: 74 AAVWAVATSVGAPLADTLREVGTSLREARDIADDVRVALAEPAATARLLAGLPLVGVPLG 133 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + VL DP G + L A +++ + R + Sbjct: 134 AVLGFDTVRVLTADPVGRLCLAAGLALVVMARVWSRRLAR 173 >gi|228925184|ref|ZP_04088294.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834523|gb|EEM80052.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 292 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 97 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 156 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 157 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 216 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 217 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 267 >gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] Length = 401 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 11/149 (7%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +RAG+PV +A ++ Q+ P++ +V E G++ S++ + + PL Sbjct: 72 ATLIRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPL---- 127 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVS 141 F ++ + GN+ + L L+ L + N+K K+Q A++ A S + F + Sbjct: 128 LFVNMMR-AGEATGNVDDTLDRLASTLEKQYNIKKKIQSAMTYPAILSLLTLVVGMFLMV 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 +V P +M+ L+ V Sbjct: 187 FIV----PTFMDAFKEMNLEMPLITVIVV 211 >gi|271962054|ref|YP_003336250.1| Flp pilus assembly protein TadB-like protein [Streptosporangium roseum DSM 43021] gi|270505229|gb|ACZ83507.1| Flp pilus assembly protein TadB-like protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 4/184 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 + KRTA + + + AG +A+A V + DPV R +I Sbjct: 47 RSRPSKRTAAWRIASIELCQGLAAELAAGRTAGEALARAVSTVEFPDPVA--LRPLIAAA 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + ++ + S + V G LS + ++ LR+ + + V Sbjct: 105 RDGGDVPAALLAAAPEQGGEAFSRLAACWKVSVTAGAGLSVLVDRVAGSLREAQAHRQDV 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A+A ++ LP + ++ L P G L + G+ Sbjct: 165 AAQLAGPRATARLLAGLPALGLLMAMGLGMRPLHFLFGSPAGVGCLALGLVLDGCGLWWT 224 Query: 180 RLMI 183 ++ Sbjct: 225 HRLV 228 >gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 261 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 7/183 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60 HL+ R + F ++F L +++ AG+P+ +A + ++ + EF V Sbjct: 69 HLVSARRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAEVEADKYIAREFALVTREVVV 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + +E++ +P Q +++ S++ + E L + K +KA+ Sbjct: 129 MGATPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQSL 188 Query: 121 ALSMEAKASAWIIGSL--PFCVSTLVYFTSP-GYMNV--LINDPRGHMLLGVAAAFMLIG 175 S+ +++ ++ P V+ L SP G + V DP + L L+G Sbjct: 189 VRSLALLFEIYVVAAMLLPILVAILALALSPLGALEVAGFALDPVTLIALTGLIYSPLVG 248 Query: 176 IMV 178 + Sbjct: 249 AVF 251 >gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium PHSC20C1] gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium PHSC20C1] Length = 305 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 8/182 (4%) Query: 9 TAKFLDDFPNALDI---IVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + P + + + AGL S A V G+S+D V + E G + Sbjct: 1 MKRARSQLPEVASVTQRLAVLLNAGLTPSSAWFHVARGRSADGVAALVALAGEE--PGGA 58 Query: 65 LSESISRMVRYMPL--QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + PL Q + + V Q+G L+ AL +R LR +++ +V Sbjct: 59 AERIVRAAEGLAPLDRQAWNSLAAAWFVAGQVGAPLAAALRTHARALRMLVHVQREVATA 118 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 A+A ++ +LP + VL++ P G L V A + + R + Sbjct: 119 LAAPVATARMVLALPAIGLVFGALLGFDTIGVLVSTPIGWGCLVVGGALIAAAVRWNRRL 178 Query: 183 IN 184 + Sbjct: 179 VR 180 >gi|222832288|gb|EEE70765.1| predicted protein [Populus trichocarpa] Length = 225 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+A + ++ DP + + + G + + ++++ R E Sbjct: 1 MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 55 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L R+ +++K+ A A + V Sbjct: 56 SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIG---AALYPAIVTLVAIVIVL 112 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P +V R L VA Sbjct: 113 FLVSYVVPQVASVFAGTKRALPWLTVAML 141 >gi|196048264|ref|ZP_03115441.1| membrane protein, putative [Bacillus cereus 03BB108] gi|196021001|gb|EDX59731.1| membrane protein, putative [Bacillus cereus 03BB108] Length = 310 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|190015191|ref|YP_001966619.1| conserved hypothetical protein [Bacillus cereus] gi|190015456|ref|YP_001966945.1| hypothetical protein pPER272_0074 [Bacillus cereus] gi|190015631|ref|YP_001967247.1| hypothetical protein BcAH187_pCER270_0104 [Bacillus cereus] gi|217956757|ref|YP_002335851.1| hypothetical protein BCAH187_C0115 [Bacillus cereus AH187] gi|218848445|ref|YP_002454971.1| hypothetical protein BCAH820_B0087 [Bacillus cereus AH820] gi|116584538|gb|ABK00655.1| putative membrane protein [Bacillus cereus] gi|116584867|gb|ABK00982.1| conserved hypothetical protein [Bacillus cereus] gi|116585137|gb|ABK01246.1| conserved hypothetical protein [Bacillus cereus] gi|217068585|gb|ACJ82833.1| putative membrane protein [Bacillus cereus AH187] gi|218540496|gb|ACK92892.1| membrane protein, putative [Bacillus cereus AH820] Length = 310 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|44004390|ref|NP_982058.1| membrane protein, putative [Bacillus cereus ATCC 10987] gi|42741456|gb|AAS44901.1| conserved membrane protein, putative [Bacillus cereus ATCC 10987] Length = 310 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2] gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2] Length = 415 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 AL + ++AG+ + DA+ I S+DP+ E F E G SLS+ + Y+ Sbjct: 77 ALRQLSVLIKAGISLKDALEDIGENSADPLIKEVFLNAAEAIDSGKSLSDVFAEYEEYLG 136 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S + + G+L+ A+ L++I + + K+ + + ++ Sbjct: 137 -----GLSLAMVRLGEKTGDLAMAIDYLAQIYENMYENRRKMIKAL---RYPIITLIAIV 188 Query: 138 FCVSTLVYFTSPGYMNVL 155 L+ P + + Sbjct: 189 VAFVFLILLVVPKFKAIF 206 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 7/97 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 L + +++G+P+ DA+ + G S+ V E + +I + G +L+E ++ Sbjct: 281 FLQTLSSLIKSGIPLLDALKISEGIVSNEVIKEKIKEIIRGINQGRNLAEMMNE------ 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + ++F + + + G L L ++ DR Sbjct: 335 TKLLNFIALRMISAGEESGELDSMLEKAAKYYEDRFQ 371 >gi|258511183|ref|YP_003184617.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477909|gb|ACV58228.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 293 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 7/174 (4%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSLSE 67 A F A+ I + ++RA + A + + D +++EF + +T L ++ + Sbjct: 118 ALFDAILREAMPIAITTLRATNRLEAAFEDVARIARDKRLKTEFDMLAKTWRGLRVTPEQ 177 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++E+ + ++ +L+E + ++ + K++A ++ + Sbjct: 178 ALMLAASRWEIEEIVQLAKATEEATKYHADLAELWLKYREQIERDEDKRRKLRAKTLAGR 237 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + I + + L Y YM P H+ V ML V+ Sbjct: 238 RNGLIYAGIVVSMFGLAYPRVQRYM-----TPLAHIGFWVVLLIMLTCTWVIWR 286 >gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 237 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 D P A D++ + AGLPV A+A + + P+ E V LG + + + + Sbjct: 97 EADLPVACDLLAVCLEAGLPVGGALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAWADV 156 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E++ V+ + G + AL +L+ R + + +A + +A W+ Sbjct: 157 P-----AELAVLGRVLVRAGESGSTVVPALRSLAGDAR----AEQRSRADAAVRRAGVWV 207 Query: 133 IGSLPFCVSTLVY 145 + L C Sbjct: 208 LAPLGVCFLPAFL 220 >gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas maltophilia K279a] gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas maltophilia K279a] Length = 311 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57 + +K+R ++ P +D++ G + ++ + + D + E + Sbjct: 147 LSSWVKRRRRAVDNELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + ++S+ R+ +++ +I GG + E L S LR+++ Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLTSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 K + + K + ++ +L + ++ Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293 >gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 307 Score = 51.2 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 6/177 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL- 61 L R P A++ I AG+ ++ ++ + E R + + Sbjct: 122 LAGDRRRNIDSTLPYAINYITAMSTAGITPAEVFRLLGNSEIYGESAVEARYITREIDVF 181 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LRDRKNMKA--- 117 G L +++ +Y P + F G NL+E N S +++ + + Sbjct: 182 GKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTFL 241 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + L E+ +A + G+L + + T + + + ++ + + +I Sbjct: 242 ETLGLISESYVTALVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVI 298 >gi|307328262|ref|ZP_07607440.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886096|gb|EFN17104.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 308 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 3/167 (1%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++ +RAG +A+ + +R + V G + +++ R+ R Sbjct: 132 DLCAVVAGELRAGRHPGEALLAV---DPGHLRERWGLVTAAARFGGEVPDALRRVARLPG 188 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + ++ + V G L+ L ++ LR ++ + + A AKA+A + LP Sbjct: 189 AEGLTGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRDSLDAKLAGAKATAAALAVLP 248 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L ++ L++ P G L V G++ M+ Sbjct: 249 VVGLVLGGLLGSNPLHELLHTPAGLSCLLVGGLLEWTGLVWTGRMVR 295 >gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR] gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR] Length = 303 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 3 HLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 ++KKR + + D P +D + S+ +G A+ + S + R+I Sbjct: 144 QMVKKRFKAWQNEVVKDIPELIDKMRISLASGKDYLSALKKVQENSGPRLSKIVERLIND 203 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA-LANLSRILRDRKNMKA 117 + ++++ + L + F + V ++G +E+ AN+ +RD + + Sbjct: 204 MQIMRP-TQALDEFAQAFGLPVMVKFVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSL 262 Query: 118 KVQALSMEAKA 128 + + K Sbjct: 263 EELTKNKPEKV 273 >gi|229020884|ref|ZP_04177583.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273] gi|229027756|ref|ZP_04183937.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272] gi|229035194|ref|ZP_04189130.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271] gi|228728086|gb|EEL79126.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271] gi|228733548|gb|EEL84351.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272] gi|228740416|gb|EEL90715.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273] Length = 307 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 112 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 172 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 231 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 282 >gi|208702094|ref|YP_002267400.1| hypothetical protein BCH308197_A0145 [Bacillus cereus H3081.97] gi|208657949|gb|ACI30319.1| membrane protein, putative [Bacillus cereus H3081.97] Length = 310 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR] gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR] Length = 290 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 16/176 (9%), Positives = 65/176 (36%), Gaps = 2/176 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ + P+ I++ + + A + +P+++ + ++ Sbjct: 99 VQRYKKRERMALMVAIPDFARILIARLVDHHSIVKAFEMTQKDCFEPMKTLAQEFVKDVG 158 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALANLSRILRDRKNMKAK 118 +G+ + ++ + + ++ + F+ + + Q G A+ + Sbjct: 159 VGIGVQLALENLKVKVSYRKFNTFTETLLLAHQEGYSTEALAAMKKAVESIESDIKAIEA 218 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +Q + + K + + + ++ F + N+ ++ G +L+ + ++ Sbjct: 219 LQITTRKKKRELFSVVIASWLFPVVLSFMNTDNTNIFLDTFSGKVLIFLYIISTMV 274 >gi|229194287|ref|ZP_04321126.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876] gi|228589186|gb|EEK47166.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876] Length = 292 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 2/169 (1%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + + KKR + D + + +++ + + + ++ E +V Sbjct: 99 LLYQRKKRYYLIVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLL 158 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAK 118 G ++ + +E+ FF ++ V + G N + L +++ +K A+ Sbjct: 159 EGGTTMHRAFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLAR 218 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 +++ +A+ + + + ++ S L G + L V Sbjct: 219 LRSSLSQAQRAFVQNCLIVIAMPIVIVLMSKEAYGFLAGSMMGKIALAV 267 >gi|182437112|ref|YP_001824831.1| hypothetical protein SGR_3319 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465628|dbj|BAG20148.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 307 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS---DP---------VRSEFRRVIETQHLGLSLSESIS 70 +V +RAG A+ + + DP + V+ G + ++ Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + L+ +S + V G L+ L L LR+ + + +++A A ++ Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL++ P G L V G+ ++ Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLACLAVGVFLEAAGLYWACRIVR 302 >gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2] gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 286 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 3/130 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVR 74 ++ + AGL + A V QS + R G ++ + Sbjct: 143 EFAQLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGE 202 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + ++ LGG +SE++ L +D + + K + + AK + ++ Sbjct: 203 GKQIPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMI 262 Query: 135 SLPFCVSTLV 144 + + +V Sbjct: 263 FMMPALFIIV 272 >gi|297529209|ref|YP_003670484.1| type II secretion system F domain protein [Geobacillus sp. C56-T3] gi|297252461|gb|ADI25907.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3] Length = 403 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L VRAG+ + D++ ++ Q+ P+ + ++ G LS + + R P Sbjct: 68 FLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANHPRIFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F ++ + G L E L L+ + K+ + A A I ++ Sbjct: 128 ----PLFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAIIATAVV 182 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T Sbjct: 183 IFLLVAVVPTFVEMFAEF 200 >gi|261418357|ref|YP_003252039.1| type II secretion system protein F [Geobacillus sp. Y412MC61] gi|319767684|ref|YP_004133185.1| type II secretion system F domain protein [Geobacillus sp. Y412MC52] gi|261374814|gb|ACX77557.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC61] gi|317112550|gb|ADU95042.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC52] Length = 403 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L VRAG+ + D++ ++ Q+ P+ + ++ G LS + + R P Sbjct: 68 FLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANHPRIFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F ++ + G L E L L+ + K+ + A A I ++ Sbjct: 128 ----PLFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAIIATAVV 182 Query: 138 FCVSTLVYFTSPGYMNVL 155 + V T Sbjct: 183 IFLLVAVVPTFVEMFAEF 200 >gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [Mycobacterium abscessus ATCC 19977] gi|169239542|emb|CAM60570.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus] Length = 258 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 4/160 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI-SRMVRYMPL 78 LD++V +R G A + + + F + LG+++ ++ + Sbjct: 92 LDVVVGELRVGAHPVRAFEIAAVELNGAAGEAFAAIAARARLGVNVDRALPRSVPARAQW 151 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + S+ + G +++ L L++R+ A+V A +A+A ++ LP Sbjct: 152 NRI---TRSWSLAQRHGLAVADLLDACRADLQERQQFTARVNAGLAGPRATAVVLTGLPV 208 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L ++VL G LL V G++ Sbjct: 209 AGIGLGQMIGARPLSVLCAGGVGGALLVVGVTLACAGLLW 248 >gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1] gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1] Length = 307 Score = 50.8 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65 R P A++ + AG+ + ++ E R + G L Sbjct: 126 RRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQSTIYGESAVEARYISRETDFFGKDL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR--ILRDRKNMKA--KVQA 121 +++ + + P + + F G NL+E N + L + + K+ + Sbjct: 186 LDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLG 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG-------YMNVLINDPRGHMLLGVAAAFML 173 L E+ +A + G L + V G Y+ + + P G M+ V + M Sbjct: 246 LIAESYVTAMVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVVLISSMT 304 >gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 450 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 55/141 (39%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+ T K + + L + +R GL AV + + R + G Sbjct: 126 LQKRSTRKKEELYTEFLFKLSELMRGGLDPVKAVKELAKTDLGVLTPHIRIASTSMTFGK 185 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S ES+ M + + + ++ ++ S GG++++ + S +R +++ + + Sbjct: 186 SFEESMKAMAQSLHSDLIRRYTMLVVQASYSGGSVADLILKASEDMRSIISIEREKEGNL 245 Query: 124 MEAKASAWIIGSLPFCVSTLV 144 + + ++ + ++ Sbjct: 246 HQYVMIFYFAQAIIIFIVYIL 266 >gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614] gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614] Length = 240 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P+ +D+ ++R G +D +A++ P V LGL + S + Sbjct: 100 DLPHVVDLFAATLRGGAAPADGIALVCTALPGPAADRLAGVAARLALGLDPGQVWSALAD 159 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 + ++ G + A+ L+ L + + +A ++ KA+ + + Sbjct: 160 ---DPHLGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALPLGL 216 Query: 134 GSLPFCVSTLV 144 LP V + Sbjct: 217 CLLPAFVLIGI 227 >gi|158333616|ref|YP_001514788.1| type II secretion system domain-containing protein/ pilin biogenesis protein PilC [Acaryochloris marina MBIC11017] gi|158303857|gb|ABW25474.1| type II secretion system domain protein/ pilin biogenesis protein PilC [Acaryochloris marina MBIC11017] Length = 406 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 13/159 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + K A F F V AG+ + + V+ Q +P ++ V Sbjct: 59 LQSITVKDKALFSRQF-------SALVNAGVALVRGLGVMSEQCKNPKLKKALLDVNAAV 111 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+SLS+++ + + GG L E L L+ +L D+ +K ++ Sbjct: 112 QQGVSLSDAM-----RGHPAAFDQLYVAMIQAGETGGVLDEVLNRLATLLEDQARLKNQI 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 ++ +I S+ + + G + L D Sbjct: 167 RSALAYPVVVGFIAVSIFLGMVIFLIPVFDGIFSQLGGD 205 >gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris 28-1] gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris 28-1] gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239] gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris FB024-16] Length = 386 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 44/104 (42%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + +V +++G L+E L ++ + + AK A + +A+A ++G LP Sbjct: 136 LRAMFIATAVSTEVGAPLAEILTRVADGIAAQLEAGAKRHAAQVGPRATARLLGVLPLAA 195 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + F + + ++ + V A M++G + MI Sbjct: 196 LVMASFIGVDVLGMALSGGLNTGIFVVGAVLMVVGNLWSHAMIR 239 >gi|311899776|dbj|BAJ32184.1| hypothetical protein KSE_64250 [Kitasatospora setae KM-6054] Length = 323 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 63/178 (35%), Gaps = 3/178 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + L+ + + G+ ++ A+ + + +E + + Sbjct: 106 RRIERLEALAEWTQRLADVLLLGVGLNQAIMTSRRTAPAALETEITDLAARLQSRWRPED 165 Query: 68 SISRMVRYM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + ++ G L+ ALA+++ +R+ + ++A + Sbjct: 166 ALRAFGDQVADSTADKVLAALVLRAGDSGPGLARALADMAESVREEVRQRRAIEADRSKH 225 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + + + V + F + GY G ++LG+ A + I MR + Sbjct: 226 RTTIRWMVGIILLVVVVGSF-NAGYTAP-YTTTIGQLVLGIVAVAFVAVIAWMRSLAR 281 >gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4] Length = 403 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 21/179 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + AG+ V DA ++ Q+ P+R V + G +S+++S+ + Sbjct: 67 FLRQFATLLEAGVTVVDATKILSEQTESKPLRKALIEVEKEIRDGNPISDALSQHKKIFE 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 F ++ + G+L E L L+ + K K+ + I + Sbjct: 127 ----PMFVNMMR-AGEATGSLDETLNMLAVHYEKQYQTKQKIVSALAYPAVVGLIAIGVV 181 Query: 138 FCVSTLVYFTSPGYMNVLIND---------------PRGHMLLGVAAAFMLIGIMVMRL 181 + V T G + D + L+ + IG + +R Sbjct: 182 IFLLVAVVPTFVGMFDDFGGDLPAITKFVIGSSEWMQKYWYLVVAFMILLAIGFVFLRQ 240 >gi|225351276|ref|ZP_03742299.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158732|gb|EEG71974.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 252 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 11/165 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR--RVIETQHLGLSLSESISRMVRYMPLQ 79 + SVR+G + A + G P + E R+ E ++ R Sbjct: 88 LRASVRSGATLVQAFEELGGT---PFATPELTRLRITMVIRSRCPPKEQCGQVERLSG-- 142 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + LG L ++ L+ ++ + KA+ ++ +LP Sbjct: 143 ELY---AACQLSLTLGCETGRCLQAVAESLKRQRLLDDLRTNAFAMPKATVKLLMALPLL 199 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L++ +G LG A G++ +R ++ Sbjct: 200 TVLLGEGMGAHSLAFLVSGVKGLACLGFALCCYTFGLIWIRALMR 244 >gi|220915777|ref|YP_002491081.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953631|gb|ACL64015.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 417 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 23/156 (14%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSE 67 F F +D AGLP+ A+ +I Q+ +P EFRRV+ T + G + ++ Sbjct: 83 FTRQFSVMID-------AGLPLVQALDIIATQADNP---EFRRVLSTVKVKVESGSTFAD 132 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + F ++ ++GG L L L + + + +V+ Sbjct: 133 ALGEHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMV 184 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A ++ V+ L+ F P + D G M Sbjct: 185 YPAIVLTVAVGVVAVLIAFVVPT-FEKMFKDFGGAM 219 >gi|229113406|ref|ZP_04242857.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15] gi|229164943|ref|ZP_04292758.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803] gi|228618527|gb|EEK75538.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803] gi|228670020|gb|EEL25412.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15] Length = 307 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 K L+ +R ++ +D + + +++ + + + ++ E +V Sbjct: 112 KFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 172 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGSNSVQVLLDIAEDFEKQKLYL 231 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S + G + L V Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFVAGSMMGKIALAV 282 >gi|326777722|ref|ZP_08236987.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658055|gb|EGE42901.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 307 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS---DP---------VRSEFRRVIETQHLGLSLSESIS 70 +V +RAG A+ + + DP + V+ G + ++ Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + L+ +S + V G L+ L L LR+ + + +++A A ++ Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL++ P G L V G+ ++ Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLTCLAVGVFLEAAGLYWACRIVR 302 >gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 301 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 4/151 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGL 63 K+ +F LD++ R+G V A+ + V V+ G Sbjct: 150 AKQARGQFRRALALYLDLVAVERRSGAGVRPAMEAAADVADSWVFRRLGEVLRRTQWSGQ 209 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++ +M + L E+ F+ ++ + + G + L S LR + A + Sbjct: 210 PPWDALEQMADELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSEDLTAANN 269 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + + I S V + +P + + Sbjct: 270 IGERMA---IPSSLLGVIFMALLIAPAVLRM 297 >gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont of Hydra magnipapillata] Length = 422 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AGLP+ A++ + ++ P R + + G L ++++ + E Sbjct: 92 LAGLVSAGLPLERALSSLAEEAETPAQRDVVATIRSEVNGGKPLGTALAQHPK-----EF 146 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L L L+ L +++N+ +K+ ++ + + + + Sbjct: 147 SDIYVAVVSAGEQSGQLGLVLERLADDLEEQQNLSSKLMGAALYPAIVSVVALVIVLFLL 206 Query: 142 TLV 144 V Sbjct: 207 AYV 209 >gi|152991304|ref|YP_001357026.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] gi|151423165|dbj|BAF70669.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2] Length = 412 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + + AGLP++ ++ V DP +++ F +++E G+SL S+ R R + Sbjct: 78 LDQLAIMLDAGLPLNFSLEETVKNEKDPMLKAIFTQILEDIESGMSLYASVERFKRQLGT 137 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +S F + + G L+E +A+LS+I ++ + + K + + + +II ++ Sbjct: 138 LSLSLF----RLGEETG-TLAEQIAHLSQIYQEILDNRRKFRKAT---RYPIFIIVAMSI 189 Query: 139 CVSTLVYFTSPGYMNVL 155 + + P + Sbjct: 190 AFAIVTILVIPQFEEFF 206 >gi|258510601|ref|YP_003184035.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477327|gb|ACV57646.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 288 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 14/165 (8%) Query: 26 SVRAGLPVSDA-------VAVIVGQSSDP-VRSEFRRVIETQH-LGLSLSESISRMVRYM 76 ++ GL V +A V I+ S DP +R EF + LG+ +++ Sbjct: 126 ALPLGLSVLEATEDVGLAVEDILRHSKDPVIRREFETIRARIAALGVPPEDALVEHAMQS 185 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + G N S ++ L+D+ ++ ++A + + A++ G+ Sbjct: 186 GVPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 Y + + L A + +GI M Sbjct: 246 GLFGLMAFYHAYAQSLIGFV-----PWALLAWAVLVGVGIYRMAK 285 >gi|188997645|ref|YP_001931896.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932712|gb|ACD67342.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 406 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 19/183 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 +D + + AG+ ++ A+ ++ Q +P ++ V + G+SLS+S+ + Sbjct: 67 EEDLAIFARQLGAMIGAGIGIAQALEILSEQMPNPTLKEALINVKDDVITGMSLSKSMQK 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P F +I+ + G L E L + ++ K+ + S A Sbjct: 127 HPKVFP----PFLINLIAAAEESG-KLDEILKRATIYYEKLAAIRRKIISASW---YPAA 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----------AFMLIGIMVMRL 181 ++ V L+ F P + + + LL +IG V+ + Sbjct: 179 VVIIATVIVLGLLTFVVPTFAEIYASFGGELPLLTQILINISNSLKENILYVIGFFVIFV 238 Query: 182 MIN 184 ++N Sbjct: 239 IMN 241 >gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 305 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ + AG + A+ +I +S P+R R V+ +G + R P Sbjct: 170 MLELVASMLDAGAGIGRALELIAKCASPPIRQSLRPVVAALAIGADWETA-WRTPTRQP- 227 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW-IIGSLP 137 EV ++ + G + L + R+R+ + E +A+A + +P Sbjct: 228 PEVVRLKDALAFAALTGAPSASILYAQAA--RERREQFR-----AAEKRAAALGVKLVVP 280 Query: 138 FCVSTLVYFTSPGYMNVLI 156 + +L F G + VLI Sbjct: 281 LGLCSLPAFICLGIVPVLI 299 >gi|260905508|ref|ZP_05913830.1| hypothetical protein BlinB_09270 [Brevibacterium linens BL2] Length = 225 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 13/170 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A++ ++ G+ +A + Q++ + LG +I+ +P Sbjct: 59 AVENCAHLLKVGMTPQAVMATLSRQNAQ-----LAPISRAISLGEEPGRAIATRGAELPG 113 Query: 79 QEVSFFS---TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 F+ +V +V + G ++ + +R R + + KA+ ++ Sbjct: 114 AAAEVFAGMSSVWTVSERSGAPAADMILRYARAQRSALDADRERHIAMAGPKATVRVLSW 173 Query: 136 LPFCV--STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP L+ P L + G + +G L+G MR M+ Sbjct: 174 LPLIGVGLGLLIGVKPA---ELFSGLPGQLSIGGGIVLYLLGRWWMRRMM 220 >gi|228912577|ref|ZP_04076239.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL 200] gi|228847046|gb|EEM92038.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL 200] Length = 307 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + + ++ E +V G ++ + +E+ Sbjct: 137 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNETFNFRELV 196 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 197 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 256 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ S L G + L V Sbjct: 257 IVIMLMSKEAYGFLAGSMMGKIALAV 282 >gi|229182302|ref|ZP_04309577.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W] gi|228601158|gb|EEK58704.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W] Length = 307 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + + ++ E +V G ++ + +E+ Sbjct: 137 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNETFNFRELV 196 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 197 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 256 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ S L G + L V Sbjct: 257 IVIMLMSKEAYGFLAGSMMGKIALAV 282 >gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] Length = 255 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + K R KF + P +D+ A +P+ D + + VR+ ++ Sbjct: 97 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 156 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++ R + + L E + + + + G L E L+ LS L + K Sbjct: 157 IMTKEKEVALKRFINEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIAR 215 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q SME K A + + V+ +Y Sbjct: 216 QDKSMEYKVLAAVFFLMASIVTLYIY 241 >gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus obeum A2-162] Length = 341 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 11/157 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQ 59 KR + L D+P+ + ++AG+ + + + Sbjct: 187 KRAEQLLMDYPSLIMKFTLLIQAGMTARKVFQKMSADYMRNRSKTGRYAYEAITIMCHEM 246 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAK 118 G++ E+ R + FST++ Q G +++ L + D + KA+ Sbjct: 247 DSGVAEMEAYRRFGERCGQMKYKTFSTILIQNLQKGSHRMADLLEKEALEAWDERKRKAR 306 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + K +I L ++ ++ P +++ Sbjct: 307 VLGETAATKLLVPMIMMLAVVMAIIMI---PAFLSFY 340 >gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619] gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619] Length = 295 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 5/150 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 ++R + + + ++ GL V A+ V+ + + E R+V++ Sbjct: 139 ARRRQQRIALEVSLMIPLLRILFETGLAVEQALRVLSQEGQALLPEISEELRQVLQRVDS 198 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+L + + R + + E ++ G ++L L +L DR+ + + + Sbjct: 199 GLALGPELEKSARVLAVDEFIDTCVILQQLLVQGSGAMKSLLALKDLLDDRRLTRMQERV 258 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 M AK SA ++ L + L+ PG+ Sbjct: 259 SKMSAKMSAVMMVFL--FPALLIVLAGPGF 286 >gi|297543559|ref|YP_003675861.1| hypothetical protein Tmath_0063 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841334|gb|ADH59850.1| hypothetical protein Tmath_0063 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 297 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 6/153 (3%) Query: 33 VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + +A+ S+P+RS +R V + +S+ E + M +E F + Sbjct: 144 IINALKSTTPYISEPLRSIIKRNVFLYEKTQMSVDECLENMAAEAGNKEFRKFINFAKMN 203 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS--P 149 ++ GGN ++AL L + + + + A + +I + L+ S P Sbjct: 204 AKYGGNFNKALTKLREQ---GEKIFSLESIKAANASVGSMVILVMIVINLLLMMNISADP 260 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + ++ N G + A ++ G+ +++ + Sbjct: 261 DIVYIVKNTITGQAIAISNAVSIVFGLYMIKNI 293 >gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis 1002] gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis I19] Length = 217 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%) Query: 20 LDIIVRSVRAGLPVSD-AVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMVR 74 LD+ V++GL S A AV + S P VRS + V +G+ + + Sbjct: 77 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 136 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L ++ TV + G L+EA L+R LR R LS+ A ++ Sbjct: 137 HPALGDL---VTVARASERSGATLAEACERLARQLRARA------SDLSLARAERAGVLI 187 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH 162 +LP V L F G V+I+ G Sbjct: 188 ALPLTVCFLPAFFLLGLAPVVISLGIGI 215 >gi|171741513|ref|ZP_02917320.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC 27678] gi|283455153|ref|YP_003359717.1| hypothetical protein BDP_0212 [Bifidobacterium dentium Bd1] gi|171277127|gb|EDT44788.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC 27678] gi|283101787|gb|ADB08893.1| hypothetical membrane-spanning protein, pilus assembly protein [Bifidobacterium dentium Bd1] Length = 270 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 11/165 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + SVR+G + A + G + + RS V E +M R Sbjct: 110 LQASVRSGATLVQAFEELGGYAFATPELTRSRIEMV---LRCRCPPEEQGGQMRRL--SA 164 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + LG S LA + L+ ++ ++ + +A+ ++ +LP Sbjct: 165 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLEDLHRNAFAMPQATVKLLMALPLL 221 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266 >gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4] gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 194 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 33/151 (21%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------------SLS 66 A D++ +RAGLPV+ A + + P+ RR + LG + Sbjct: 54 AFDLLAACLRAGLPVATAAQAVARSAPAPLSESLRRAADLLALGADAATAWEAAASDPAT 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES++RM R + G +L+ ++ L+ + + +V+ L+ + Sbjct: 114 ESLARMARR---------------SAASGSSLAGSMTELAA------DARTQVEHLASAS 152 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A ++ S P + L F G + V++ Sbjct: 153 AERAGVLISGPLGLCFLPAFICLGIIPVVVG 183 >gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 408 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%) Query: 75 YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + E + V +Q+G L+E L ++ + AK + KA+ Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A ++G LP + F +++ + + M+ G + MI Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262 >gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 306 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 64/151 (42%), Gaps = 4/151 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F + LD++ ++ G + +A+ + R+ + Sbjct: 152 LRQEAEERRRDFRHVVGSFLDLVAMNLAGGRGLPEALMTASTIGDHWAMARIRQALANAR 211 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L G++ ++++R+ + ++E+ ++ +++ G + +L + LR ++ + Sbjct: 212 LIGITPWDAMARLGDDLGVEELRDLASALALAGDEGAKIRASLLARAASLRRKELADVE- 270 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 ++ + ++ L C + +++ P Sbjct: 271 --GKAGERSQSMLVAQLVMCAAFMLFLGYPA 299 >gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii DSM 5219] Length = 641 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%) Query: 5 IKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IK+R +K + P L + AG+ +S A+ ++ + E +++ G Sbjct: 422 IKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVSRSKIGVLNIEIKKMASHLSWGG 481 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L E + + + + S T I S+ ++ L + + +K + S Sbjct: 482 NLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLNIAASEAEMQSQLKRE---RS 538 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 E +I+ +VY + ++ + Sbjct: 539 AEMTVYVFIVYVAFLVFLFIVYVLAAYFLPAV 570 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 13/153 (8%) Query: 30 GLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFST 86 G+ + D + Q EF +I G + ++ P ++ F Sbjct: 137 GMSLFDIFKSLSQQRHIYGVAADEFGYIIRDMEYFGYDMLTALKNANDNSPSEKYKNFLD 196 Query: 87 VISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQALSMEAKASAWIIGSL-PFCVS 141 + GG+++ L N S R + + A+ E + +++G + + Sbjct: 197 GMLSIVSSGGDVTSYLKNKSEEYRFLASREQKTFLETLAILAEVYITVFVVGPIFLITIL 256 Query: 142 TLVYFTSPGYMNVLIND-----PRGHMLLGVAA 169 ++ F ++VL P G +L V Sbjct: 257 IVLGFMGSNSLDVLYTLVYVLIPIGTVLFIVFL 289 >gi|217967264|ref|YP_002352770.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336363|gb|ACK42156.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 409 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F ++ AGL +S + ++ QS +R + + G SLSE+ + Sbjct: 75 FTRQFATMIN-------AGLSLSTCLNILSEQSESKALRQILKEIQRMVDEGSSLSEAFA 127 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + S + ++ G L E L L+ L ++ ++ K+++ Sbjct: 128 KFPNV-----FSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVL 182 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I F + T + G + Sbjct: 183 IIAIGAGFGMLTFLVPIFAGMFESM 207 >gi|91794691|ref|YP_564342.1| type II secretion system protein [Shewanella denitrificans OS217] gi|91716693|gb|ABE56619.1| type II secretion system protein [Shewanella denitrificans OS217] Length = 405 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + V E ++E G LS ++++ + Sbjct: 73 MYSLTRSGIPILRAIAGLSESTHSKVMKEALEDILEQLTAGRPLSSAMNQYPKVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F ++I V + G L + LS + + + +++ + +++G++ + Sbjct: 129 ALFVSMIHV-GENTGKLEDVFIQLSSYIEREQETRRRIK---SAMRYPMFVLGAIVIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + ++ Sbjct: 185 ILNIMVIPKFADMF 198 >gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 600 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 60/172 (34%), Gaps = 12/172 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64 R + D P AL + ++ + + + V E ++ + G Sbjct: 99 RKTRIDIDLPYALTYME-ALSTNVTLYSLFKSVFEAEDLYGEVSHECGMIVRDVEIFGED 157 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + + P + + +++ + GGNL E + S R+ + + M Sbjct: 158 LLTAMRNLQKITPSENFADLLNDLALVFRTGGNLKEFFNSRSDSYRELARQELEATLQIM 217 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 E A ++ + ++ ++ + + G LG M +G+ Sbjct: 218 EMIAEVYVTAFVAGPIALIIMLVA--------QNLSGRGQLGGIMPLMYVGL 261 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 K T + P L I G+ + A+ ++ + SE + G S Sbjct: 392 RKMYTRRVEAQMPEFLRDIADMKDLGMTLQTAIEMVSSSKLGLLSSELKIASREVKWGYS 451 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +S ++ RM + L V ++I S++ L + L L M++K Sbjct: 452 VSSALVRMEERIGLVSVKRAISLIVKASEITDQLRDILTIAISDLDHYLKMQSK 505 >gi|206901854|ref|YP_002250592.1| FimO [Dictyoglomus thermophilum H-6-12] gi|206740957|gb|ACI20015.1| FimO [Dictyoglomus thermophilum H-6-12] Length = 409 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F ++ AGL +S + ++ QS ++ + V G SLSE+ + Sbjct: 75 FTRQFATMIN-------AGLSLSTCLNILSEQSESKALKQILKEVQRMVDEGSSLSEAFA 127 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + S + ++ G L E L L+ L ++ ++ K+++ Sbjct: 128 KFPDV-----FSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVL 182 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I F + T + G + Sbjct: 183 IIAIGAGFGMLTFLVPIFAGMFESM 207 >gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425] gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425] Length = 406 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + + K A F F V AG+ + + V+ Q ++P ++ V Sbjct: 59 LSKITVKDRAIFSRQF-------AALVNAGVALVRGLGVMADQCTNPKMKKVLTSVNNDV 111 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS+++ + + + GG L + L LS++L D+ + ++ Sbjct: 112 QQGTTLSDAM-----RGHPEAFDNLYVAMIQAGETGGVLDDVLNRLSKLLEDQARLNNQI 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + + F + + G L Sbjct: 167 KSAMAYPVTVGGLAVLIFFGMIIFLIPVFSGIFKQL 202 >gi|218290610|ref|ZP_03494712.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus acidocaldarius LAA1] gi|218239394|gb|EED06591.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus acidocaldarius LAA1] Length = 278 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 5/177 (2%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 ++ D A+++ V AG V + + + P+++ F R + L++++ Sbjct: 101 MIRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLAVADW 160 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + P S+ + GG+L ++R L+ R+ + + + + Sbjct: 161 LRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRK 216 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A + +Y ++ L+ +P +L VA ++ R M Sbjct: 217 EATQLLLAMLVSPAALYLMFRRSLDNLMQAEPFMQVLFAVALVGYVVLFWFARRMAR 273 >gi|315657630|ref|ZP_07910512.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492102|gb|EFU81711.1| type II secretion system protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 408 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%) Query: 75 YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + E + V +Q+G L+E L ++ + AK + KA+ Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A ++G LP + F +++ + + M+ G + MI Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262 >gi|253576053|ref|ZP_04853386.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844628|gb|EES72643.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 288 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 5/179 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K R D P+ L + + + V A+ V + F + Sbjct: 98 LKVKRKIRQNVLFD-LPSNLRLFISKLTDFPNVQKALENAVLDMDGVTKPIFEKASNQLR 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALANLSRILRDRKNMKAK 118 +GL + M+ + ++++ F + + G ++L + + + Sbjct: 157 VGLPIDRVFEEMLSELKIRKMEDFLDKLRMAQMEGFHPQSLDSLKETVDEIGEDITQIQE 216 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIG 175 + + + + + + + + ++ F + G NV +N G + + AA IG Sbjct: 217 LDIEAKSKRKQLFTVIGMAWMMPVMMSFMNNGNANVFLNTLHGQIYIVSFAAATLFSIG 275 >gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A] gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 453 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 5/170 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + K++ K F + L + +R G+ V + ++ E + LG Sbjct: 136 MQKRKLRKQEVAFSDFLYKLSELMRGGIDPVKGVIALSRGELGAIKKEVQDCASFLVLGH 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL S++R+ + + V+ + +I + GGN+++ + S +R +++ + + Sbjct: 196 SLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLVFRTSEDMRAVISLEREKENNL 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ L + ++ + + LI G +LG + Sbjct: 256 KQY----AVVFYLAQGIMVMLVYILSTSLLPLIQ-GTGMAMLGGQGVSDI 300 >gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMVRY 75 + ++ +G+ V A+ V+ + D + E R V+ GL L E + + Sbjct: 152 FIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSGLELGEELRKTAAL 211 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + E+S +++ GG ++L L +++ DR+ + + + AK S ++ Sbjct: 212 LAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYISKLSAKMSVVMMVF 271 Query: 136 LPFCVSTLVYFTSPGYMNV 154 L + L+ PG+M + Sbjct: 272 L--FPALLIVLAGPGFMAI 288 >gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 297 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 50/134 (37%), Gaps = 1/134 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KR + + D++V S+ G V+ A+A + + R + Sbjct: 142 LRDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQAT 201 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L S ++ + E + + + + G + +LA ++ LR + + Sbjct: 202 LMRQSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEMDA 261 Query: 120 QALSMEAKASAWII 133 +A S + S +I Sbjct: 262 EAQSATERMSLPVI 275 >gi|299529575|ref|ZP_07043012.1| general secretion pathway protein F [Comamonas testosteroni S44] gi|298722438|gb|EFI63358.1| general secretion pathway protein F [Comamonas testosteroni S44] Length = 407 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+A + ++ D + + + + G S + ++ + R E Sbjct: 77 LSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR-----EF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L NL+ L R+ +++K+ S+ A + V Sbjct: 132 SDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASL---YPAIVTLVAIVIVI 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P V R L V Sbjct: 189 FLVSYVVPQVAGVFAGTKRALPFLTVVML 217 >gi|77454609|ref|YP_345477.1| hypothetical protein pREL1_0042 [Rhodococcus erythropolis PR4] gi|77019609|dbj|BAE45985.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 292 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 17/180 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A + S+RAG + + I + ++ E I + + Sbjct: 98 RRLAAMD----EWTRNLSSSMRAGSGIEHTI--ISTPIPETLKDEITAFINRLRNNVPPA 151 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQA 121 E+++R + + + Q G L+ L L+ + D R+ ++A ++ Sbjct: 152 EAVTRFASDLNDSVGDKICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKS 211 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 +AK I ++ F P ++L + + M+ Sbjct: 212 TRTQAKWVTIITIAVLAAAFAFTNFMEP------YRSGGMQIVLLILLTLFAADLYWMKQ 265 >gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM 13514] gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM 13514] Length = 261 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 5/182 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60 HL+ R + F ++ L +++ + AG+P+ AV + + + E Sbjct: 69 HLVSARRSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMIV 128 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++S +P +++ ++L + L L K +KA+ Sbjct: 129 MGSSPEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSL 188 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 SM +++ ++ + S + VL G + L +L+ ++ M Sbjct: 189 VRSMSLMFEIFVVVTILLPTLVYIVALSLSPLGVL---ELGGLALDPLTLMLLMSLIYMP 245 Query: 181 LM 182 +M Sbjct: 246 IM 247 >gi|229492886|ref|ZP_04386682.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229320160|gb|EEN85985.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 294 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 13/164 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + S+RAG + + I + ++ E I + +E+++R + Sbjct: 112 LSSSMRAGSGIEHTI--ISTPIPETLKDEITAFINRLRNNVPPAEAVTRFASDLNDSVGD 169 Query: 83 FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137 + + Q G L+ L L+ + D R+ ++A ++ +AK I ++ Sbjct: 170 KICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKSTRTQAKWVTIITIAVL 229 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 F P ++L + + M+ Sbjct: 230 AAAFAFTNFMEP------YRSGGMQIVLLILLTLFAADLYWMKQ 267 >gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus hellenicus DSM 12710] gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus hellenicus DSM 12710] Length = 591 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 10/179 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLG 62 R +FP + V +GL A I S + F ++ LG Sbjct: 97 RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKTAELSQRFILLVR--VLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S + + P + GG++++ L +R+L ++ K+ A Sbjct: 155 RDPLTAFSMLAQRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIAD 214 Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178 + A++ + L ++YF + +++ P L+ M+ G+++ Sbjct: 215 RLAGLLEAYLALVLLSLISLAVMYFVTVSFVSAVPFGLSPASLFLVLYILIPMISGMII 273 >gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 402 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 12/143 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P++ A+ + Q ++P +R+ V G S S+++S Sbjct: 72 LTSMLDAGIPLTRALFTLSKQIANPTLRNAVSDVARNVEGGQSFSDALSAHPGI-----F 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S ++ ++GG LSEAL+ LS L K+++ V++ S ++G V Sbjct: 127 STLFVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHVRSASF---YPIAVLGFAGVVVL 183 Query: 142 TLVYFTSPGYMNVLINDPRGHML 164 ++YF P +M P G +L Sbjct: 184 AMLYFLVPVFMQFF---PEGMVL 203 >gi|47568976|ref|ZP_00239667.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|208743461|ref|YP_002267912.1| membrane protein, putative, (pxo1-60) [Bacillus cereus] gi|301068121|ref|YP_003786892.1| membrane protein [Bacillus anthracis CI] gi|47554360|gb|EAL12720.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|300379211|gb|ADK08114.1| membrane protein, putative [Bacillus cereus biovar anthracis str. CI] Length = 310 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + + +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 587 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 8/148 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGL 63 ++ R D P+AL ++ R+V G V A+A V + L + Sbjct: 359 LRARVRAVEDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDEAVGVQRRLRV 418 Query: 64 SLSESIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM----K 116 + ES ++ P V+ +T++ + + G A+ +++ L + + Sbjct: 419 GVVESFRGEYGVLESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQLSALARLDAEAR 478 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++ +++ +A + G L + + Sbjct: 479 RELASVTETLSNTAAVFGPLVAGATVAL 506 >gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium pseudotuberculosis FRC41] gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium pseudotuberculosis FRC41] Length = 207 Score = 49.3 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%) Query: 20 LDIIVRSVRAGLPVSD-AVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMVR 74 LD+ V++GL S A AV + S P VRS + V +G+ + + Sbjct: 67 LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L ++ TV + G L+EA L+R LR R LS+ A ++ Sbjct: 127 HPALGDL---VTVARASERSGATLAEACERLARQLRARA------SDLSLARAERAGVLI 177 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH 162 +LP V L F G V+I+ G Sbjct: 178 ALPLTVCFLPAFFLLGLAPVVISLGIGI 205 >gi|182414900|ref|YP_001819966.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177842114|gb|ACB76366.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 439 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 9/143 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VRAG+P+ + V+ Q S P R + T G SLSE++++ R Sbjct: 107 LATLVRAGMPLVRGLEVLARQESGPRFREIVNDLAATIRAGESLSEALAQHPRV-----F 161 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + GG L L L+ L +KA++ ++ V+ Sbjct: 162 DRLYVSMARAGEAGGVLHVVLERLAAFLEKSARLKARIA---AAMTYPVIVLALAGGIVA 218 Query: 142 TLVYFTSPGYMNVLINDPRGHML 164 L+ F P + + +G L Sbjct: 219 ALMVFVVPRFEQIFSGLLKGQPL 241 >gi|314922439|gb|EFS86270.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1] Length = 236 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 5/153 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + V G S A+ + + +G S+S+++ R + Sbjct: 88 ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAHAVGGSVSDALIATSRQPGM 142 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + + G L+ A +++ R ++A + + A+AS I+G LP Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + L G L + Sbjct: 203 VGLLMGHVVGAHPTVFLTTTRLGRACLLGSTLL 235 >gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 232 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 4/141 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A+ + P ALD++V ++ AG A AV+ + P+ E R + + Sbjct: 82 RQRRQAEMVRLLPAALDLVVTALEAGRSPGGAFAVVADAAPAPLAEELRGLARRLEVAAD 141 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + + ++ + G + +A ++ LR + + ++ S+ Sbjct: 142 PLDVWDAL---VRDPTLAPVGRALRRSEVTGMPAARVVARVADDLRRTRRAEIAHRSRSV 198 Query: 125 EAKASAWI-IGSLPFCVSTLV 144 +A + + LP + Sbjct: 199 GVATAAPLGLCFLPAFFLVGI 219 >gi|10956307|ref|NP_052756.1| hypothetical protein pxo1_60 [Bacillus anthracis] gi|21392772|ref|NP_652851.1| hypothetical protein BXA0086 [Bacillus anthracis str. A2012] gi|47566407|ref|YP_016417.2| membrane protein [Bacillus anthracis str. 'Ames Ancestor'] gi|167636781|ref|ZP_02395064.1| membrane protein, putative [Bacillus anthracis str. A0442] gi|167642108|ref|ZP_02400330.1| membrane protein, putative [Bacillus anthracis str. A0193] gi|170689827|ref|ZP_02880997.1| membrane protein, putative [Bacillus anthracis str. A0465] gi|170709478|ref|ZP_02899878.1| membrane protein, putative [Bacillus anthracis str. A0389] gi|177656380|ref|ZP_02937273.1| membrane protein, putative [Bacillus anthracis str. A0174] gi|190569518|ref|ZP_03022379.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I] gi|229599847|ref|YP_002860776.1| hypothetical protein BAA_A0084 [Bacillus anthracis str. A0248] gi|254687777|ref|ZP_05151633.1| hypothetical protein BantC_28598 [Bacillus anthracis str. CNEVA-9066] gi|254739267|ref|ZP_05196969.1| hypothetical protein BantWNA_29281 [Bacillus anthracis str. Western North America USA6153] gi|254745063|ref|ZP_05202740.1| hypothetical protein BantKB_29365 [Bacillus anthracis str. Kruger B] gi|254762573|ref|ZP_05214413.1| hypothetical protein BantA9_29198 [Bacillus anthracis str. Australia 94] gi|4894276|gb|AAD32364.1| pXO1-60 [Bacillus anthracis] gi|20520159|gb|AAM26041.1| putative membrane protein [Bacillus anthracis str. A2012] gi|47552222|gb|AAT28827.2| membrane protein, putative [Bacillus anthracis str. 'Ames Ancestor'] gi|167509791|gb|EDR85215.1| membrane protein, putative [Bacillus anthracis str. A0193] gi|167527707|gb|EDR90546.1| membrane protein, putative [Bacillus anthracis str. A0442] gi|170125439|gb|EDS94366.1| membrane protein, putative [Bacillus anthracis str. A0389] gi|170666202|gb|EDT16995.1| membrane protein, putative [Bacillus anthracis str. A0465] gi|172079740|gb|EDT64857.1| membrane protein, putative [Bacillus anthracis str. A0174] gi|190559297|gb|EDV13321.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I] gi|229269466|gb|ACQ51102.1| putative membrane protein [Bacillus anthracis str. A0248] Length = 310 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + + +R ++ +D + + +++ + + + ++ E +V Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC 43063] gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 408 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%) Query: 75 YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + E + V +Q+G L+E L ++ + AK + KA+ Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A ++G LP + F +++ + + M+ G + MI Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWVFVIGLGLMVAGNLWSAAMIR 262 >gi|306823786|ref|ZP_07457160.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|304552784|gb|EFM40697.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] Length = 270 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 11/165 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + SVR+G + A + G + + RS V E +M R Sbjct: 110 LQASVRSGATLVQAFEELGGCAFATPELTRSRIEMV---LRCRCPPEEQGEQMRRL--SA 164 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + LG S LA + L+ ++ + + +A+ ++ +LP Sbjct: 165 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 221 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266 >gi|83591454|ref|YP_425206.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170] gi|83574368|gb|ABC20919.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170] Length = 411 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 9/153 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 L+ +R A + + R++ AG+P+ +A+ I +R RRV G Sbjct: 60 LVGRRGAIAERELQQLFLHLDRALGAGVPLLEALDDIGEVTGDGRLRMILRRVRGDLSQG 119 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+LS+++ R R + + V+ + G +L A L LR R+++ +++ Sbjct: 120 LALSDALGRHERALG----PMVAPVVRAGEESG-DLGGAFGPLVAHLRWREDLGRRLRKA 174 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++G++ L+ P + L Sbjct: 175 T---RYPLVVLGAIALLFVFLMAVVVPDLASFL 204 >gi|209522190|ref|ZP_03270831.1| general secretion pathway protein F [Burkholderia sp. H160] gi|209497381|gb|EDZ97595.1| general secretion pathway protein F [Burkholderia sp. H160] Length = 405 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 27/195 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALQQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------- 170 I + V+ L+ + P +NV + + L V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTVVMMALSGFVRHWW 225 Query: 171 -FMLIGIMVMRLMIN 184 MLIG++V+ ++ Sbjct: 226 WAMLIGVLVIAYLVR 240 >gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 641 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 58/149 (38%), Gaps = 3/149 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ P+ LD + G+ ++ ++AVI + + E R+ G + S Sbjct: 422 QKIRSLESMIPDFLDRMAGINEVGITLTQSIAVIARANMGVLGYEISRIHRDIEWGANFS 481 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ R + ++ T+I+ + + ++S L + R +N++ E Sbjct: 482 DALIRFEHRVRTALIARTVTLITRAATMSSSISSLLRIAANDARMSENLRR---DRFSEM 538 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ F ++ + ++ VL Sbjct: 539 FIYTAIVYLSFFVFIFVIGVITTQFLTVL 567 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 8/177 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61 K R K PNA+ + + G + + + S+ V EFR+ + Sbjct: 123 KKSRETKITIGLPNAVSYMYAMRKGGAEIITILRSLSEMSAIYGEVSLEFRQAVRDADFF 182 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-- 119 G + ++ + P +++ F + + GGNL++ L + IL++ + K Sbjct: 183 GYDIINALKHVSETTPSRKLRDFLQDLISTVESGGNLAQFLQDRVFILQEEAKFEQKQFL 242 Query: 120 --QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 L E + +I G L F + LV G +L G+ +L + AA ++ Sbjct: 243 QFLGLVAEIYVTIFIAGPL-FLIVILVVMGMMGSSAILELSLIGYAVLPIGAAIFIL 298 >gi|165873432|ref|ZP_02218031.1| membrane protein, putative [Bacillus anthracis str. A0488] gi|227811506|ref|YP_002811517.1| hypothetical protein BAMEG_A0081 [Bacillus anthracis str. CDC 684] gi|254756466|ref|ZP_05208495.1| hypothetical protein BantV_28727 [Bacillus anthracis str. Vollum] gi|164710807|gb|EDR16385.1| membrane protein, putative [Bacillus anthracis str. A0488] gi|227008037|gb|ACP17779.1| putative membrane protein [Bacillus anthracis str. CDC 684] Length = 310 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 + + +R ++ +D + + +++ + + + ++ E ++ Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKISL 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116 G ++ + +E+ FF ++ V + G N + L +++ +K Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 A++++ +A+ + + + ++ S L G + L V Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285 >gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 348 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 4/142 (2%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 AK P+ L ++ ++RAG+ ++ + + + G + SE++ Sbjct: 100 AKIEKVLPDMLLLMAANLRAGMIPENSFIASMKPEFGKLNYLLNKAAIETQAGKNFSEAL 159 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRD---RKNMKAKVQALSME 125 M + +IS + G L L NL S +LR+ R +M+A+V++ S+ Sbjct: 160 LEMNDMTNSEFFKDSVRIISEGIRSGAELHLILENLASNLLRNESIRNDMRAQVKSYSLF 219 Query: 126 AKASAWIIGSLPFCVSTLVYFT 147 +A + L + VS+ + Sbjct: 220 IFIAATLAAPLLYGVSSFLIGI 241 >gi|239814078|ref|YP_002942988.1| general secretion pathway protein F [Variovorax paradoxus S110] gi|239800655|gb|ACS17722.1| general secretion pathway protein F [Variovorax paradoxus S110] Length = 411 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 9/155 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ +P R+ + + G + +++ R E Sbjct: 81 LAGLVSSGLPLERALTALTDEAETEPQRNLVASLRAEVNAGSPFARALAAHPR-----EF 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S T + + GNL L L+ L +R+ ++ K+ A A + V Sbjct: 136 SPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIG---AALYPAIVTLVAIVIVI 192 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 LV + P V R L + + Sbjct: 193 FLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAAV 227 >gi|118431778|ref|NP_148457.2| hypothetical protein APE_2206.1 [Aeropyrum pernix K1] gi|116063100|dbj|BAA81218.2| hypothetical protein [Aeropyrum pernix K1] Length = 284 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 19/178 (10%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N L I + + GL ++ + + P+ RR+ + LG+SL +S+ R VR + Sbjct: 74 NFLRDIAETRKTGLSPEQSIISLSARDYGPLTKVVRRIATSLQLGMSLEDSVRRSVRRIK 133 Query: 78 ----LQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALSMEAKAS 129 L + F ISV GG E L L+R ++ + + + + + Sbjct: 134 DWASLSALRFLVDSISV----GGGSPEVLDALARYTYGLVSIQDEFRKRTRIYIIMPYLG 189 Query: 130 AWIIGSLPFCVSTL----VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A I+ + + + +PG ++ P +GV + IG+M+ M+ Sbjct: 190 AIIVAASTLVMLGYTIKTLQVVNPGGETSVVAVPEN---IGVVGLILAIGVMLNSWMM 244 >gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167] gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167] Length = 590 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 8/177 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67 F + L ++G ++ + + + + + G+ + Sbjct: 375 RRSLERAFSDFLRDFTELRKSGFTPEKIISTLADTRDYGALSRYLKDISKQIRYGIPIRV 434 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALS 123 +S + F+ ++ + GG E L +L+ ++R ++ A+++ L Sbjct: 435 VLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRINDDLLARLKPLR 494 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV---LINDPRGHMLLGVAAAFMLIGIM 177 A I+ + V S ++++ +N G L + ++G++ Sbjct: 495 FVPYIGAMILTLTLVIMVFTVVGLSSVFLHIPQYYVNYVVGSFALTIVVDSFVMGLV 551 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVIETQHLGLS 64 K + P + ++GL V+ A+ + ++ + E V++ + +G+ Sbjct: 115 QYKVDSELPFFAAYLAMISQSGLSVTSAIERLANIRLLEAIGKIARE--IVVKNKAIGMD 172 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA----NLSRILRDRKNMKAKVQ 120 +++ P + GG++ L + D+ A+ Sbjct: 173 PLTALTESALSTPSHLFQNLIMGYVTNVRTGGDILHYLEIRLNEIVNDTLDKIRRGAEFL 232 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + ME+ A +I + V L +P Sbjct: 233 STLMESYIGAGVILLIGLNVLYLAQAITPT 262 >gi|90412975|ref|ZP_01220973.1| putative MSHA biogenesis protein MshG [Photobacterium profundum 3TCK] gi|90325990|gb|EAS42429.1| putative MSHA biogenesis protein MshG [Photobacterium profundum 3TCK] Length = 406 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%) Query: 9 TAKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLG 62 F +D P AL I R + +AG+P+ A+ + +S P+ E V+ G Sbjct: 55 KQLFQNDIPLEALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMTDLTNG 114 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SLS ++ + R F ++I V + G L E+L L+ + +++ Sbjct: 115 HSLSAAMKQHRRVFS----DLFVSMIHV-GENTGRLDESLLQLAHYFEQEMETRRRIK-- 167 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++I ++ + L P + ++ Sbjct: 168 -SAMRYPLFVISAIMLAMVVLNIKVIPQFASMF 199 >gi|229065596|ref|ZP_04200826.1| hypothetical protein bcere0026_55990 [Bacillus cereus AH603] gi|228715665|gb|EEL67458.1| hypothetical protein bcere0026_55990 [Bacillus cereus AH603] Length = 174 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 1/146 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + D ++ E +V G ++ + +E+ Sbjct: 4 VANALQISNNAKRVLLQVKPMMHDSIQEEIEKVSLLLEGGTTMHRAFRGFNETFNFRELV 63 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 64 FFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 123 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ S L G + L V Sbjct: 124 IIIMLMSKEAYGFLAGSMMGKIALTV 149 >gi|218290592|ref|ZP_03494694.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus acidocaldarius LAA1] gi|218239376|gb|EED06573.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus acidocaldarius LAA1] Length = 286 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 14/165 (8%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRVIETQH-LGLSLSESISRMVRYM 76 ++ GL V +A + D +R EF + LGL +++ Sbjct: 126 ALPLGLSVLEATEDVGLAIEDILRHGKDPVIQREFEAIRARVKALGLPPEDALVEHASES 185 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + G N S ++ L+D+ ++ ++A + + A++ G+ Sbjct: 186 GIPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 Y + + L V A + +GI M Sbjct: 246 GLFGLMAFYHAYAQSLIGFV-----PWALLVWAVLVGVGIYRMAR 285 >gi|54310367|ref|YP_131387.1| putative MSHA biogenesis protein MshG [Photobacterium profundum SS9] gi|46914808|emb|CAG21585.1| putative MSHA biogenesis protein MshG [Photobacterium profundum SS9] Length = 407 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%) Query: 9 TAKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLG 62 F +D P AL I R + +AG+P+ A+ + +S P+ E V+ G Sbjct: 56 KQLFQNDIPLEALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMSDLTNG 115 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SLS ++ + R F ++I V + G L E+L L+ + +++ Sbjct: 116 HSLSAAMKQHRRVFS----DLFVSMIHV-GENTGRLDESLLQLAHYFEQEMETRRRIK-- 168 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++I ++ + L P + ++ Sbjct: 169 -SAMRYPLFVISAIMLAMVVLNIKVIPQFASMF 200 >gi|296394990|ref|YP_003659874.1| transmembrane protein [Segniliparus rotundus DSM 44985] gi|296182137|gb|ADG99043.1| putative transmembrane protein [Segniliparus rotundus DSM 44985] Length = 285 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 15/179 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIETQHLGLSLSESISR 71 AL +V +R G + A A + + V R V LG + + + R Sbjct: 103 ALMAVVDELRVGAHPAHAFASAAQEGALAATCGGREVARTMREVAARARLGGDVGQGLRR 162 Query: 72 MVRYMPLQEVSF-------FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + Q G +++ L ++ R + A Sbjct: 163 RAAAARSAGLGLGGAFWERLASCWELSHQEGVPIAQVLGSVRADAVQRVRFAERADAALA 222 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 A+A+A I+ LP L + VL +D G LL + F+ G+ R + Sbjct: 223 GARATAKILSGLPLLCVVLGQSLGAQPLRVLFSD-SGSFLLMIGCGFLCAGLAWSRRIT 280 >gi|264676753|ref|YP_003276659.1| general secretion pathway protein F [Comamonas testosteroni CNB-2] gi|262207265|gb|ACY31363.1| general secretion pathway protein F [Comamonas testosteroni CNB-2] Length = 407 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+A + ++ D + + + + G S + ++ + R E Sbjct: 77 LSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR-----EF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L NL+ L R+ +++K+ S+ A + V Sbjct: 132 SDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASL---YPAIVTLVAIVIVI 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P V R L V Sbjct: 189 FLVSYVVPQVAGVFAGTKRALPFLTVVML 217 >gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 417 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + V+AG+P+ + V+ QS + +R V G +LSE++ Sbjct: 78 RDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKTLRLTAASVAMAVEAGNTLSEALRAF 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P F T++ + GG L E L L+ L +++AKV+ I Sbjct: 138 PKIFP----ELFVTMVE-AGETGGALEEVLERLATQLEKDADIRAKVK---SAMSYPLVI 189 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + +S ++ F P + +L + Sbjct: 190 LAVALAAISIILIFVLPTFTEMLTS 214 >gi|104781449|ref|YP_607947.1| type II secretion pathway protein F (XcpS-2) [Pseudomonas entomophila L48] gi|95110436|emb|CAK15144.1| putative type II secretion pathway protein F (XcpS-2) [Pseudomonas entomophila L48] Length = 401 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 6/152 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + AGLP+ A+ + Q+ + V G+ L++++ Sbjct: 67 ATRQLASLLAAGLPLEAALGATLEQAERKHIAQVLGAVRADVRSGMRLADAL---AERP- 122 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L+ + L+ + +R ++ K+ + + + Sbjct: 123 -RDFPDIYRALVAAGEESGDLARVMERLADYIEERNTLRGKIMTAFIYPGVVGLVSVGIV 181 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + V D G L +AA Sbjct: 182 IFLLSYVVPQVVSAFTQARQDLPGLTLAMLAA 213 >gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L] gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L] Length = 405 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 15/146 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F V AG+ + + V+ Q S+P ++ + G +LS+++ Sbjct: 70 FSRQF-------AAMVNAGVAIVRCLGVLGEQCSNPKLKKALMNISAEVQQGTNLSDAMR 122 Query: 71 RMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + + ++GG L E L L+++L D ++ ++++ Sbjct: 123 K------HPDCFDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQNQIKSAMAYPSVV 176 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + ++ + G L Sbjct: 177 GFLALLVFLAMTMFLIPIFAGIFQDL 202 >gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] Length = 406 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 17/170 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 A F F V AG+ + + ++ Q ++P ++ + G SLS+ Sbjct: 68 RAVFSRQF-------AVMVNAGVAIVRCLGILSEQCANPKLKKSLTAISSEVQQGTSLSD 120 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + ++GG L E L L+++L D ++ +++ Sbjct: 121 AMREHP-----ACFDQLYVSMVQAGEVGGVLDEVLNRLAKLLEDMARLQNQIK---SAMT 172 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + G + F P + + G + A L G++ Sbjct: 173 YPLVVGGFAVLVFLGMTIFLIP-IFAGIFEEIGGTLPALTAFMLWLSGVL 221 >gi|326390768|ref|ZP_08212321.1| hypothetical protein TheetDRAFT_1561 [Thermoanaerobacter ethanolicus JW 200] gi|325993162|gb|EGD51601.1| hypothetical protein TheetDRAFT_1561 [Thermoanaerobacter ethanolicus JW 200] Length = 297 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 33 VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + +A+ S+P+RS +R V + +S+ E + M +E F + Sbjct: 144 IINALKSTTPYISEPLRSIIKRNVFLYEKTQMSVDECLENMAVEAGNREFRKFINFAKMN 203 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 ++ GGN ++AL L ++++ A + I+ + + + T P Sbjct: 204 AKYGGNFNKALMKLREQGEKLFSLESIKAANASVGSMVILIMIVINLLLMMNIS-TDPDI 262 Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + ++ N G + A ++ G+ +++ + Sbjct: 263 VYIVKNTITGQAIAISNAVSIIFGLYMIKNI 293 >gi|229825135|ref|ZP_04451204.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC 49176] gi|229790507|gb|EEP26621.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC 49176] Length = 404 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 6/156 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV--IVGQSSDPVRSEFRRVIETQ 59 K IK R + + + + V + AGL VS S+ + E R + Sbjct: 252 KKKIKDREEELKNGYTEFVGRFVILLGAGLSVSAIWKKLEAGFASNKSLSEEIRLTLWET 311 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAK 118 G + E+ + + + + F +VI+ +LG G L L S + +AK Sbjct: 312 ANGKTEREAYENFGKRIGGTQYAKFVSVINQSLKLGSGQLLARLEAESEAAMFERRNRAK 371 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 V + K ++ + V ++ P M V Sbjct: 372 VMGEVADTKL---LLPMMLQLVLIMLIIMVPALMAV 404 >gi|224368238|ref|YP_002602401.1| GspF1 [Desulfobacterium autotrophicum HRM2] gi|223690954|gb|ACN14237.1| GspF1 [Desulfobacterium autotrophicum HRM2] Length = 411 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 6/167 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + AG P+ AV+ +V Q+ P++ ++ + G S +E+++ Sbjct: 71 NAELAMVTRQLATLLSAGFPLISAVSSLVTQTRSKPLKKVLSKIKGSIEEGKSFAEALAM 130 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P S + + G L L L+ I R+ K K+QA A Sbjct: 131 ----YPSL-FSAIYINMIRAGESSGTLEIVLERLADITEKREETKKKIQAALAYPVLMAI 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + + + G L ++ + L Sbjct: 186 VGALVLLFLLAYIVPGIIAIFSDMNQTLPGPTLFLISVSSFLKRFWW 232 >gi|309802104|ref|ZP_07696214.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] gi|308221305|gb|EFO77607.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] Length = 249 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 11/165 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + SVR+G + A + G + + RS V E +M R Sbjct: 89 LQASVRSGATLVQAFEELGGCAFATPELTRSRIEMV---LRCRCPPEEQGEQMRRL--SA 143 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E+ + LG S LA + L+ ++ + + +A+ ++ +LP Sbjct: 144 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 200 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L D RG + LG A IG++ +R+++ Sbjct: 201 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 245 >gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 418 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 16/160 (10%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRRVI 56 KR + L D+ L ++ + AG+ + A + Q E Sbjct: 262 KRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWDKVAFDYQKLVDDGKQKPRYAYQEMYETS 321 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRILRDRKN 114 G+ + R LQ+ S+++ + G NL + L ++ RK+ Sbjct: 322 CQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLLEQNRKNGSKNLRDTLKVEMAEAFEQRKH 381 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ E + ++ +V P M Sbjct: 382 QARRL----GEEAGTKLLLPLFMMLSVVMVVIAVPALMEF 417 >gi|296141575|ref|YP_003648818.1| type II secretion system F domain protein [Tsukamurella paurometabola DSM 20162] gi|296029709|gb|ADG80479.1| Type II secretion system F domain protein [Tsukamurella paurometabola DSM 20162] Length = 269 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 3/166 (1%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D +V + G + A A + D VRS F + LG ++ + Sbjct: 93 VDAMVAELSVGAHPAAACATAGRDAEDSHVRSVFAEMAGRAELGGDVAAGLRLHA--SES 150 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ G + E LA++ LR R+ + + + A+A+A ++ +LP Sbjct: 151 TAWERLAAAWETGTRHGIGMGELLASVREDLRARERYERRAHSALAGARATAQVLAALPV 210 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L++ G +LL V G++ R + + Sbjct: 211 LGVAMGQLIGADPLGTLLSTGAGGVLLVVGVCLTCAGLLWSRSIAD 256 >gi|237786542|ref|YP_002907247.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM 44385] gi|237759454|gb|ACR18704.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM 44385] Length = 216 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 8/157 (5%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH-L 61 + + + A +I + AG AV + + V E R ++ L Sbjct: 30 QRQVIAQWAQASSMIASELLAGASPLVAVRHVADEMDGADDMEGQVARELRTMVNHCAWL 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +S + V + G L+E + + L+ + + + + +A Sbjct: 90 GAPCA-PLSTWSSEPEQVGRQAIARAWLVSHRTGVPLAEVMQATAADLQAKLHHQERTEA 148 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 +AS ++ LP + G ++ L+ Sbjct: 149 SLAGPRASTRVLMFLPLVGVAMGQSMGAGSIHFLLTT 185 >gi|258516391|ref|YP_003192613.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257780096|gb|ACV63990.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 403 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 59/153 (38%), Gaps = 6/153 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 +++ ++KR + + + AG+P++ + + QS +P + + Sbjct: 50 LRNALQKRGKVKIGQLSFFSRQLSAMLTAGIPLTRGLYTLSEQSENPVLARAAGEMAHAV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S S ++S + +I ++GG + E L LS L K ++ + Sbjct: 110 EGGMSFSAAMSAHQDIFS----KMYVDMIK-AGEVGGMMEEMLNRLSMQLEREKILRDNI 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 ++ + G + C+ + G++ Sbjct: 165 KSATFYPIIIIMFAGLVILCMMFFIVPIFEGFI 197 >gi|4139238|gb|AAD05175.1| general secretory pathway protein F [Burkholderia pseudomallei 1026b] Length = 405 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLAHYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|308051179|ref|YP_003914745.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307633369|gb|ADN77671.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 405 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ R+G+P+ A+A +V P+ + + ++E G LS ++++ R Sbjct: 73 MLSLTRSGIPLLQALAGLVESQRHPLMAAALKDIVEQLTAGRPLSAALNQHPRV-----F 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L +A LS L ++ + ++Q + ++G + V+ Sbjct: 128 NALYVAMVHVGENTGRLDQAFERLSDHLEQEQDTRRRIQ---SAMRYPLLVLGFIAIAVA 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 VLNILVIPKFAQMF 198 >gi|257793129|ref|YP_003186527.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479821|gb|ACV60138.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 287 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 14/166 (8%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRV-IETQHLGLSLSESISRMVRYM 76 ++ GL V +A + D +R EF + Q LGL +++ Sbjct: 126 ALPLGLSVLEATEDVGLAIEDILRHGKDPVIQREFEAIRARVQALGLPPEDALVEHAMQS 185 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + + G N S ++ L+D+ ++ ++A + + A++ G+ Sbjct: 186 GVPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 Y + + LL A + +G+ M + Sbjct: 246 GLFGLMAFYHAYAQSLIGFVP----WALLAWA-VLVGVGVYRMARL 286 >gi|238025714|ref|YP_002909945.1| general secretion pathway protein F [Burkholderia glumae BGR1] gi|237874908|gb|ACR27241.1| General secretion pathway protein F [Burkholderia glumae BGR1] Length = 405 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 20/179 (11%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLTAGLPLGEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV- 119 G SL+ +++ R E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLASALTEHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQRNALKQKIV 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A + + +G + F +S +V P +NV + L + M + V Sbjct: 169 LAFTYPGIVTLIALGIVTFLLSYVV----PQVVNVFASTK--QQLPFLTIVMMALSAFV 221 >gi|134281633|ref|ZP_01768341.1| general secretion pathway protein F [Burkholderia pseudomallei 305] gi|134247300|gb|EBA47386.1| general secretion pathway protein F [Burkholderia pseudomallei 305] Length = 405 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|15895250|ref|NP_348599.1| hypothetical protein CA_C1979 [Clostridium acetobutylicum ATCC 824] gi|15024960|gb|AAK79939.1|AE007702_6 Predicted membrane protein [Clostridium acetobutylicum ATCC 824] gi|325509396|gb|ADZ21032.1| membrane protein [Clostridium acetobutylicum EA 2018] Length = 317 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 65/164 (39%), Gaps = 4/164 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMV 73 N++ ++ S+++ V + + ++ ++++ ++ R + +G+ + ++ + Sbjct: 144 NSIMFLISSLKSNAAVKNNIVFMMEETTEKLKEPLRTYNNDFVRDIRVGMPMKKAFENYI 203 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + + S + + L ++R+ K K ++ A+ S I Sbjct: 204 NKVENIRLRNILKNLYICSLNNADYCKLLDKTRVVIRNYYEEKEKRKSKVKSAQISITAI 263 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + +L+N G +L+G +L I Sbjct: 264 AFATLIILNALSKVTDNFYALLMNTTTGQVLVGYLLCVILFSIY 307 >gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 625 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 70/177 (39%), Gaps = 9/177 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64 R + D P A+ + ++ + + + + I V EF ++ + G Sbjct: 101 RKSSIDLDLPYAITYMQ-ALSTTMTLYNVIRKIYEADDLFGEVGKEFGLIVRDVEVFGDD 159 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I + + P + + F + + S GG+++ L++ S R+ + + ++ Sbjct: 160 LYTAIRNLQKVTPSKNLEEFLNDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTI 219 Query: 125 EAKASAWIIGSL--PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 E A ++ + P + ++ + G + L L+ + A IG++ + Sbjct: 220 EVMAEVYVTAFVAGPITMIIIIVAQNLGGKSDLAGY---MPLIIIGLALGSIGMIYI 273 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L +V G+ + A+++I + E E G + ++ RM + Sbjct: 406 PEFLRQLVDMKDVGVTLQTAISLISNSKLGVLSQELVMTSEDIRRGATTINALVRMEDRI 465 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEAL 102 L V +++ S++ + + L Sbjct: 466 GLVSVKRAISLLVKASEVTDYIKDVL 491 >gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 272 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 5/154 (3%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R P A D++ + AG A + G PV + LG Sbjct: 120 RRLEALAARQIPLAADLLTACLAAGAGPRKAAEAVGGSLGGPVGERLAQTAAELRLGAEP 179 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + R+ L + + G E ++ L+ R + A +A Sbjct: 180 AHAWGRIGA---LPGAQGLARALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRADRTG 236 Query: 126 AKASAWIIGS-LPFCVSTLVYFTSPGYMNVLIND 158 +A + G LP + + G L+ D Sbjct: 237 VLVNAPLAGCFLPAFLLVGLAPVMIGLARGLMGD 270 >gi|330947086|gb|EGH47866.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330948094|gb|EGH48354.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 51 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 1 MPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 49 >gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia intestinalis M50/1] gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia intestinalis XB6B4] Length = 423 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 11/147 (7%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----------SSDPVRSEFRRVIETQ 59 A + + + +V + AG+ VS A + V E +R Sbjct: 269 ALLELQYADMVSNLVLLLGAGMTVSKAWNRLTENYMNERQKRTICRKEVYEEMQRTSFEI 328 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118 G+ + R F +++ + G L+ L + + + A+ Sbjct: 329 KNGMGEERAYERFGERCGGYRYRKFGNLLAQNLRKGSRGLTRLLEQEAEDAFEERKSMAR 388 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 K +I L + L + Sbjct: 389 KLGEEAGTKMLFPMILMLGAVMLILAF 415 >gi|312795078|ref|YP_004028000.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI 454] gi|312166853|emb|CBW73856.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI 454] Length = 414 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A + +R+GL + A+A++ + P++ F V+ G +LS ++ R R P Sbjct: 81 ATRHLAMLLRSGLSLQPALALVAQHAGMPLKPLFETVLRDITEGSTLSRALQRHDRVFPA 140 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+L LA L+ RDR + Sbjct: 141 AYWRLVELA-----EHTGSLDTILAQLADT-RDRVAAQR 173 >gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC 49239] gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 608 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 14/154 (9%) Query: 5 IKKRT------AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 + +R P+A+ +I V G+ V A+A + F R Sbjct: 337 VHRRRAVLSNVRAVERSLPDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRR 396 Query: 59 QH-LGLSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 L + + E+ +P V +++V + G + L L+ L + + Sbjct: 397 SDTLRVDVREAFLGRGGPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRE 456 Query: 115 M----KAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + ++ ++ +A + L + + Sbjct: 457 LENDARRQLATVTGTLTNTAAVFAPLVGGATVAL 490 >gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC 25986] gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC 25986] Length = 213 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 1/112 (0%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYM 76 +D++ + AGL A+ + + R +G+ + + + R + Sbjct: 75 EMIDVVRLGLSAGLSFDAALEIFCANRRSVLALRLERACMAWQVGVGTREDELLAAARDL 134 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++ + F+ + LG L+E LA SR +R + + K Sbjct: 135 DVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKL 186 >gi|330465239|ref|YP_004402982.1| hypothetical protein VAB18032_06290 [Verrucosispora maris AB-18-032] gi|328808210|gb|AEB42382.1| hypothetical protein VAB18032_06290 [Verrucosispora maris AB-18-032] Length = 422 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 37/201 (18%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++ R + + L + +RAGLPV + ++ VRS V Sbjct: 221 RVRARRERL-----DQLCALAADLRAGLPVP-----VAAEALGLVRSV-STVRRELAASA 269 Query: 64 SLSES------------------------ISRMVRYMPLQEV--SFFSTVISVQSQLGGN 97 + + +S + + + + + G Sbjct: 270 TGPTARAQRPDKPVLPDPVVPGNSTSTGDLSESAGRLAAPDRPGQLAQAAVRLADRTGAP 329 Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 L++ + + R A A + A+A+AW++ +LP L Y + VL++ Sbjct: 330 LADLIERIEADARSADRAVAAAAAQAAGARATAWLLAALPLGGIALGYGIGADPLQVLLH 389 Query: 158 DPRGHMLLGVAAAFMLIGIMV 178 P G A A ++G++ Sbjct: 390 TPIGGACAVTAIALQVVGLLW 410 >gi|212717044|ref|ZP_03325172.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM 16992] gi|212660032|gb|EEB20607.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM 16992] Length = 258 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 7/166 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR--RVIETQHLGLSLSESISRMVRYMPLQ 79 + SVR+G+ + A + G P + E R+ E + + ++ Sbjct: 88 LRASVRSGVTLVQAFEELGGT---PFATPELTRLRITMVIRSRCPRKEQFGQGGQSGQVE 144 Query: 80 EVSF-FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +S + LG L ++ L+ ++ + KA+ ++ +LP Sbjct: 145 RLSGELYAACRLSLTLGCETDRCLQAVAESLKRQRLLDDLRANAFAMPKATMKLLMALPL 204 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L++ +G LG A G++ +R ++ Sbjct: 205 LTVLLGEGMGVHSLVFLVSGVKGLACLGFALCCYTFGLIWIRALMR 250 >gi|224369331|ref|YP_002603495.1| PilC [Desulfobacterium autotrophicum HRM2] gi|223692048|gb|ACN15331.1| PilC [Desulfobacterium autotrophicum HRM2] Length = 402 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 20/176 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ + ++ Q + + +++ E+ G + +++++ Sbjct: 68 FSRQFSTMID-------AGLPLLQCLDILHAQQENVTFKKILKKIKESVESGETFADALA 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + F+ +++ + GG L L LS + +K +V+ + Sbjct: 121 KFPDIFN----ELFTNMVA-AGEAGGILDIILRRLSAYMEKMAKLKKQVKGAMTYPAITL 175 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179 + + + V + LL V +IG ++ Sbjct: 176 AVAVIVVGIILVFVIPVFAEMFADFGSTLPAPTLLVVFLSEFVINNILYIIGAFIV 231 >gi|189424714|ref|YP_001951891.1| type II secretion system protein [Geobacter lovleyi SZ] gi|189420973|gb|ACD95371.1| type II secretion system protein [Geobacter lovleyi SZ] Length = 404 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 29/181 (16%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D +GLP+ + ++ Q P + RV E+ G + +++++ Sbjct: 69 FTRQFATMID-------SGLPLVQCLDILSSQQEKPAFKEILLRVKESVESGSTFADALA 121 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + F + ++GG L L L+ + +K +++ Sbjct: 122 KHPKAFD----QLFVN-LVAAGEIGGILDTILNRLAAYIEKAMKLKKQIKG---AMVYPT 173 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLGVA------AAFMLIGIMV 178 I+ V ++ F P + D G ++G++ ++IG Sbjct: 174 TIMSIAVIVVGVILVFVIPT-FAKMFADFGGELPGPTKFVIGLSNFLLKYIIVIIIGCFA 232 Query: 179 M 179 + Sbjct: 233 I 233 >gi|53717648|ref|YP_106634.1| general secretory pathway protein F [Burkholderia pseudomallei K96243] gi|53723931|ref|YP_104302.1| general secretion pathway protein F [Burkholderia mallei ATCC 23344] gi|67641922|ref|ZP_00440687.1| general secretion pathway protein F [Burkholderia mallei GB8 horse 4] gi|76810282|ref|YP_331638.1| general secretion pathway protein F [Burkholderia pseudomallei 1710b] gi|121599922|ref|YP_994794.1| general secretion pathway protein F [Burkholderia mallei SAVP1] gi|124385216|ref|YP_001027863.1| general secretion pathway protein F [Burkholderia mallei NCTC 10229] gi|126449176|ref|YP_001082189.1| general secretion pathway protein F [Burkholderia mallei NCTC 10247] gi|126454081|ref|YP_001064294.1| general secretion pathway protein F [Burkholderia pseudomallei 1106a] gi|167000475|ref|ZP_02266289.1| general secretion pathway protein F [Burkholderia mallei PRL-20] gi|167736417|ref|ZP_02409191.1| general secretion pathway protein F [Burkholderia pseudomallei 14] gi|167813492|ref|ZP_02445172.1| general secretion pathway protein F [Burkholderia pseudomallei 91] gi|167822033|ref|ZP_02453504.1| general secretion pathway protein F [Burkholderia pseudomallei 9] gi|167892118|ref|ZP_02479520.1| general secretion pathway protein F [Burkholderia pseudomallei 7894] gi|167900629|ref|ZP_02487834.1| general secretion pathway protein F [Burkholderia pseudomallei NCTC 13177] gi|167908853|ref|ZP_02495944.1| general secretion pathway protein F [Burkholderia pseudomallei 112] gi|167921123|ref|ZP_02508214.1| general secretion pathway protein F [Burkholderia pseudomallei BCC215] gi|217423903|ref|ZP_03455403.1| general secretion pathway protein F [Burkholderia pseudomallei 576] gi|226193102|ref|ZP_03788712.1| general secretion pathway protein F [Burkholderia pseudomallei Pakistan 9] gi|237814401|ref|YP_002898852.1| general secretion pathway protein F [Burkholderia pseudomallei MSHR346] gi|242314746|ref|ZP_04813762.1| general secretion pathway protein F [Burkholderia pseudomallei 1106b] gi|254174966|ref|ZP_04881627.1| general secretion pathway protein F [Burkholderia mallei ATCC 10399] gi|254186540|ref|ZP_04893057.1| general secretion pathway protein F [Burkholderia pseudomallei Pasteur 52237] gi|254194735|ref|ZP_04901166.1| general secretion pathway protein F [Burkholderia pseudomallei S13] gi|254201376|ref|ZP_04907740.1| general secretion pathway protein F [Burkholderia mallei FMH] gi|254206718|ref|ZP_04913069.1| general secretion pathway protein F [Burkholderia mallei JHU] gi|254259573|ref|ZP_04950627.1| general secretion pathway protein F [Burkholderia pseudomallei 1710a] gi|254298656|ref|ZP_04966107.1| general secretion pathway protein F [Burkholderia pseudomallei 406e] gi|254357383|ref|ZP_04973657.1| general secretion pathway protein F [Burkholderia mallei 2002721280] gi|52208062|emb|CAH33992.1| general secretory pathway protein F [Burkholderia pseudomallei K96243] gi|52427354|gb|AAU47947.1| general secretion pathway protein F [Burkholderia mallei ATCC 23344] gi|76579735|gb|ABA49210.1| general secretion pathway protein F [Burkholderia pseudomallei 1710b] gi|121228732|gb|ABM51250.1| general secretion pathway protein F [Burkholderia mallei SAVP1] gi|124293236|gb|ABN02505.1| general secretion pathway protein F [Burkholderia mallei NCTC 10229] gi|126227723|gb|ABN91263.1| general secretion pathway protein F [Burkholderia pseudomallei 1106a] gi|126242046|gb|ABO05139.1| general secretion pathway protein F [Burkholderia mallei NCTC 10247] gi|147747270|gb|EDK54346.1| general secretion pathway protein F [Burkholderia mallei FMH] gi|147752260|gb|EDK59326.1| general secretion pathway protein F [Burkholderia mallei JHU] gi|148026447|gb|EDK84532.1| general secretion pathway protein F [Burkholderia mallei 2002721280] gi|157808490|gb|EDO85660.1| general secretion pathway protein F [Burkholderia pseudomallei 406e] gi|157934225|gb|EDO89895.1| general secretion pathway protein F [Burkholderia pseudomallei Pasteur 52237] gi|160696011|gb|EDP85981.1| general secretion pathway protein F [Burkholderia mallei ATCC 10399] gi|169651485|gb|EDS84178.1| general secretion pathway protein F [Burkholderia pseudomallei S13] gi|217392966|gb|EEC32988.1| general secretion pathway protein F [Burkholderia pseudomallei 576] gi|225934702|gb|EEH30679.1| general secretion pathway protein F [Burkholderia pseudomallei Pakistan 9] gi|237503308|gb|ACQ95626.1| general secretion pathway protein F [Burkholderia pseudomallei MSHR346] gi|238522937|gb|EEP86379.1| general secretion pathway protein F [Burkholderia mallei GB8 horse 4] gi|242137985|gb|EES24387.1| general secretion pathway protein F [Burkholderia pseudomallei 1106b] gi|243063664|gb|EES45850.1| general secretion pathway protein F [Burkholderia mallei PRL-20] gi|254218262|gb|EET07646.1| general secretion pathway protein F [Burkholderia pseudomallei 1710a] Length = 405 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|158314421|ref|YP_001506929.1| integral membrane protein [Frankia sp. EAN1pec] gi|158109826|gb|ABW12023.1| integral membrane protein [Frankia sp. EAN1pec] Length = 302 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 52/157 (33%), Gaps = 2/157 (1%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + A + A+ + +R E + + LS ++ + + Sbjct: 114 LAAAAGLEQAILATAATAPAAIRGEIALLAARINRRERLSPALRGLADDLDDPLADLVIG 173 Query: 87 VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + ++ LS L L+ R +M +++ + + ++ + + Sbjct: 174 ALILAAEHQARQLSGLLGQLAATARAHVDMLGRIEVGRARMRTTMRVVVVTSIVFAGGLV 233 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + ++ + G ++L A G + +R M Sbjct: 234 IFNRPFLAP-YSTAAGQLVLLAIGAIFAGGFVWLRRM 269 >gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans DSM 574] gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans DSM 574] Length = 260 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 68/178 (38%), Gaps = 9/178 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-- 62 ++R + + + + G ++ ++ + + +P+ SE ++ +H+ Sbjct: 78 REERIRQVREKAKDFVMAASGLYSTGQSDTEVISTMSKRLPEPLASELHEMVVQRHMNDQ 137 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILRDRKNMKAKVQ 120 +S + R+ + E + S +I +GG +++A L L +R R + + + Sbjct: 138 VSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVGGPVAKANGLMKLGAAIRMRSKLLLERK 197 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++E K ++ + + L G LL + AF + I + Sbjct: 198 KANLEPKIASMFVILVLGLGLMLDITIWRDLYQQ-----SGKFLLAIGLAFEIALIFI 250 >gi|170721363|ref|YP_001749051.1| general secretion pathway protein F [Pseudomonas putida W619] gi|169759366|gb|ACA72682.1| general secretion pathway protein F [Pseudomonas putida W619] Length = 399 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 11/159 (6%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG P+ A+ ++ P RV E GL LS+++ Sbjct: 68 QQLTTLLSAGQPLDRALGTVLKNVRRPAAKAVLERVREQVKAGLPLSQALEEHP-----G 122 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S F T + + GG L LA L+ L ++ +V + A+++ + Sbjct: 123 SFSPFYTSLVRAGEAGGVLEVTLAQLAGYLEQSHKLRGEVINALI---YPAFLVIGVVGS 179 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ L+ + P ++ + G + V A + +G V Sbjct: 180 LALLLAYVVPQFVPIF--QDLGVPIPLVTRAVLAMGEFV 216 >gi|330958320|gb|EGH58580.1| general secretion pathway protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 403 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 14/166 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A++ V Q+ + V G+ L+E+++ R ++ Sbjct: 73 MASLLGAGLPLDEALSATVEQAERKHIIQTLGEVRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L++ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIAAGEESGDLAQVMERLADYIEERNMLRGKILTAFIYPCVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVM 179 + V + D G L +AA L+GI+ M Sbjct: 188 SYVVPQVVSAFSQARQDLPGLTLAMLAASDFIRTWGLMCLVGIVAM 233 >gi|167843646|ref|ZP_02469154.1| general secretion pathway protein F [Burkholderia pseudomallei B7210] Length = 405 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|160901134|ref|YP_001566716.1| general secretion pathway protein F [Delftia acidovorans SPH-1] gi|160366718|gb|ABX38331.1| general secretion pathway protein F [Delftia acidovorans SPH-1] Length = 408 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+A + ++ DP + + + G + + ++++ R E Sbjct: 78 MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L R+ +++K+ A A + V Sbjct: 133 SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIG---AALYPAIVTLVAIVIVL 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P +V R L VA Sbjct: 190 FLVSYVVPQVASVFAGTKRALPWLTVAML 218 >gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1] gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1] Length = 649 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 50/112 (44%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + D P L + G+ ++DA+A+ + ++SE +R + +L Sbjct: 437 RRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKSEIKRTVADIRWNSNLV 496 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +++ R + ++I+ S+ G++ + ++ ++ KN+K + Sbjct: 497 DAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKE 548 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 8 RTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61 R P+A L ++ R G+ + D + + S EF ++ Sbjct: 136 RKRAINASMPHATAFLYVLQRG--GGMTIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYF 193 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +S+ P ++ + GG+++ L N + + + N + K Sbjct: 194 GKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDLYKSNANKEHKRFL 253 Query: 122 LSMEAKASAWIIGSL--PFCVSTLVYFTS 148 ++ A +I + P + ++ + Sbjct: 254 ETLGLLAEVYITVFVVGPLFLMVILVVMN 282 >gi|126441326|ref|YP_001057064.1| general secretion pathway protein F [Burkholderia pseudomallei 668] gi|254184075|ref|ZP_04890666.1| general secretion pathway protein F [Burkholderia pseudomallei 1655] gi|126220819|gb|ABN84325.1| general secretion pathway protein F [Burkholderia pseudomallei 668] gi|184214607|gb|EDU11650.1| general secretion pathway protein F [Burkholderia pseudomallei 1655] Length = 405 Score = 48.2 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|254445165|ref|ZP_05058641.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] gi|198259473|gb|EDY83781.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] Length = 390 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 7/137 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AGLP+ A+ + Q+ DPV FR +I +S + S P + Sbjct: 57 QQLASMLEAGLPLVSALDALQDQTEDPV---FRIIIREVKADVSQGNNFSAACAKFP-RA 112 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G L+E L ++ + KV+ +I V Sbjct: 113 FNNLFISMVEAGEASGGLAEILGKVAGYFEATTKLTKKVK---SAMTYPVAVIALAIMLV 169 Query: 141 STLVYFTSPGYMNVLIN 157 + L+ F P + ++ + Sbjct: 170 NVLLIFVVPTFADMFTD 186 >gi|134298672|ref|YP_001112168.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1] gi|134051372|gb|ABO49343.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1] Length = 289 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 5/174 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + KF F A+ + R + + +A + + PV F + E+ G Sbjct: 106 KRKKFRTLFTRAVSDMAVVARN-STILEGIAHVAENAKPPVSDIFSYISESIQKGEKDYL 164 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGG--NLSEALANLSRILRDRKNMKAKVQALSME 125 +I + + E+ + + + + LGG E L + + +++ + KV E Sbjct: 165 AIIKAAEVYNVPELLPLADSVRIIADLGGGKRAPEILTSAAEMVKHQNRFIDKVNIAVSE 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A I + + P ++ + MLL ++I + + Sbjct: 225 MLWDAAISMLILVACFAWLAL--PEDSVYRLSLSKHPMLLAAGFGSLIICWVFI 276 >gi|329848233|ref|ZP_08263261.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328843296|gb|EGF92865.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 403 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D L + +RAG + A+ V+ S +R V + G SL ++ ++ Sbjct: 70 DLEEFLRNLAVLLRAGADIRTALGVVGSDSHPQIRD----VSQKILGGASLDAALGHVIP 125 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWII 133 L + + G+++ L +++L R+ ++ ++ +ALS A + Sbjct: 126 -PGLTHLRGLIAA----GEARGDVASGLDGAAQVLTTRRKIRQQLFEALSYPVFVFATAL 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +L + +V +P +L + R + F+ G+ Sbjct: 181 AALSIILLVVVPAIAP----LLSDTGRDPPVYFAIIVFLSEGL 219 >gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 10/156 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60 K+ +F +D++ G V A+ F R+ E Sbjct: 148 AKRARLEFTRALGAYIDLVALERNNGSGVRQAMEAAAEVGD---SWVFTRLTEELARSRW 204 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ E++ + + L ++ F+ ++ + + G ++ L S+ +R + Sbjct: 205 SGVPPWEALRTLAEELGLPDLEDFADIMRLSGEEGASVYTNLRARSQAMRTAMLNDELTE 264 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 A ++ + S I + V + +P + ++ Sbjct: 265 ANAVGERMS---IPASLLGVVFMALLLAPSLLRMVY 297 >gi|16081952|ref|NP_394362.1| hypothetical protein Ta0903 [Thermoplasma acidophilum DSM 1728] gi|10640180|emb|CAC12032.1| hypothetical membrane protein [Thermoplasma acidophilum] Length = 238 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 10/160 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ + + GL + + +I + P++ E + + G ++ E S+ ++ Sbjct: 48 QVPSLVRDLSGYSSYGLSLYSVLRMIKNEDLGPIKEEVDKAMAMMKNGNTIEEV-SQYLQ 106 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +++ S V+ + G E L LS + +R V + E I Sbjct: 107 KNSSPDLALVSAVLK-NADNTGRAGETLQFLSTYMNERSTNHKNV-TQTSENYVGLVIGS 164 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 L F + +V ++ GH ++ +++ M++ Sbjct: 165 FLIFVLVMVV-------VDFYFLKSNGHAMVLLSSVIMMV 197 >gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] Length = 402 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 13/164 (7%) Query: 1 MKHLIKKRTAKFLDDFPNAL---DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVI 56 + KR K P+ L + + AG+P++ + + QS + + Sbjct: 51 LNLFKAKRKVK----LPDVLFFTRQLAAMLAAGIPLTRCLNTLSKQSENASLSDIASEMA 106 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G++LSE++ S + ++GG++ E L L+ L K ++ Sbjct: 107 RNVEAGMNLSEALKAYPEV-----FSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLR 161 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 +++ + + + T V G+ + P Sbjct: 162 DSIRSATFYPATVMAFALLVVLVMLTFVVPVFAGFFPAGMELPL 205 >gi|302530825|ref|ZP_07283167.1| predicted protein [Streptomyces sp. AA4] gi|302439720|gb|EFL11536.1| predicted protein [Streptomyces sp. AA4] Length = 155 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 14/163 (8%) Query: 23 IVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +RAG PV+ A + + E + L +L S + Sbjct: 1 MVSELRAGAHPVTA--AEAAADAVPELAGELHNLATAARLDGTLESS-----------AL 47 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ + G +++AL R + ++ A + SA ++ LP Sbjct: 48 PAVAQSWNLARRHGLPIADALEAARRDVDAEVAFIRRLHAKMAGPRMSAIVLTVLPVGCL 107 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + VL G L AA + G R + N Sbjct: 108 AMGQLIGANPLAVLTETLIGQAFLVAGAALLWAGTAWSRALTN 150 >gi|119715365|ref|YP_922330.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536026|gb|ABL80643.1| type II secretion system protein [Nocardioides sp. JS614] Length = 411 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 17/173 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K + + A F F +D AGL + A++++ Q +P +R R V + Sbjct: 67 KRIKPRDLAVFARQFATMID-------AGLTMLRALSIMAEQVENPELRKVLRAVKQDVE 119 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + + R P ++ + GG L A+ ++ +++K++ Sbjct: 120 AGHSLSSAFGKWPRVFPP-----LMISMAKAGEAGGFLDTAMRQIADNFEAEVKLRSKIK 174 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + ++ C++ L++ + D G + L ML Sbjct: 175 AALTYP--TVVFFLAIIMCIALLIFVV--PVFEKMFKDLGGELPLPTKILVML 223 >gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 368 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 9/143 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + PV R LG + + R+ Sbjct: 222 RQLPLAADLLSACIAAGAGPVLAAQAVGETLGGPVGEALARGAAEVRLGGEPAAAWHRLA 281 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + + ++ G L+ + L+ +A+ + A ++ Sbjct: 282 ---SVPGAAALARLLERADVSGLPLAAPVGRLAA------EARAEWTRAATARARRAAVM 332 Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156 S P + L F + G + V+I Sbjct: 333 VSAPVGLCFLPAFITVGVVPVVI 355 >gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena XCL-2] gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena XCL-2] Length = 404 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 33/186 (17%) Query: 20 LDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74 L ++ R + AG+P++DA+ + Q+ + + F + E G S +++++ Sbjct: 67 LSLMTRQIFTLLGAGMPMADALRSVANQAENKLMKRFATGIFEKVSEGHSYAQALTSSGF 126 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-----LSMEAKAS 129 +P + + + G +L E L+ ++ + ++ ++ K+++ M A Sbjct: 127 NLP----RDYVATVRAGEESG-HLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMVVMAV 181 Query: 130 AWIIGSLPFCVSTLVYFTS------PGYMNVLINDP------RGHMLLGVAAAFMLIGIM 177 A I+ + F V +V P L+N G +LLG IG++ Sbjct: 182 AIILFLMAFVVPKVVSVFDNMNQNLPPLTQGLLNTSDFLDQHWGWLLLG------SIGLI 235 Query: 178 VMRLMI 183 V+ M+ Sbjct: 236 VVYKML 241 >gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 474 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 38 AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMPLQE-VSFFSTVISVQSQLG 95 Q+ D + + + LG + ++ + R +E + + + G Sbjct: 136 ERAYRQTQDDIDELLDTLAREEQLGFAAGTTLGALNARRAHSRERIRELGLCLRMNETTG 195 Query: 96 GNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 L++ L + + + + + AL+ K + I+ LPF + + + Sbjct: 196 APLAQTLRAAAEHAEEHLDALLGRESALTGP-KTTGKILSWLPFIGLAMGWLMGTDPVGA 254 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L G + L+G ++ Sbjct: 255 LTGSLAGLLTGFFGITLALLGRRWTARLV 283 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 15/132 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESISRMVRY 75 L+++ +RAGL ++ A+ + + + + T + + Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDALEHITLTLTVSADWQAAWDG---- 391 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSMEAKASAWII 133 + + +++ G S L + + R +R+ + AK + ++ Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAER------ASAKLAVALV 445 Query: 134 GSLPFCVSTLVY 145 L C Sbjct: 446 LPLGLCSLPAFI 457 >gi|238062254|ref|ZP_04606963.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149] gi|237884065|gb|EEP72893.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149] Length = 245 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 9/129 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG V +V + P+ RV T LG E+ S + +P+ + Sbjct: 118 MRAGASVDRSVLAVADALGGPLADRLGRVGRTLLLGGGPQEAWSHL---LPVPGAERLAG 174 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 S G L+ AL L+ LR + + A A ++ LP + L F Sbjct: 175 AALRSSNSGAALAGALTRLADDLRADR------STAAEAAARRAGVLIVLPLGLCFLPAF 228 Query: 147 TSPGYMNVL 155 G + V+ Sbjct: 229 ILAGLVPVI 237 >gi|88854702|ref|ZP_01129368.1| type IV pilus biogenesis protein PilC [marine actinobacterium PHSC20C1] gi|88815863|gb|EAR25719.1| type IV pilus biogenesis protein PilC [marine actinobacterium PHSC20C1] Length = 413 Score = 48.2 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 11/156 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GL + A+ ++ Q+ + + + + G +LS++ ++ P Sbjct: 83 MSTMISSGLSLIRALVILSEQTENKTLAKALGEIRQDVETGGTLSDAFAKHGTVFPP--- 139 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG L +AL +++ ++ +++ ++ V Sbjct: 140 --IMIHLVRAGETGGFLDDALESIANNFEGEVKLRGTIKSALT---YPVVVLIMAIAAVV 194 Query: 142 TLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGI 176 ++ F P + D G LL +M G+ Sbjct: 195 GMLIFIVP-VFEEMFADLGGELPLLTQVLVWMSTGM 229 >gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649] gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649] Length = 302 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 10/163 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K+ A+F +D++ G A+ FRR+ E Sbjct: 146 VRDDAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAAGGD---SWVFRRLSEELA 202 Query: 61 ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 GL+ E++ + + L E+ + ++ + + G + L S +R Sbjct: 203 RTRWSGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNT 262 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 K +A + + S I V L +P + V+ P Sbjct: 263 EKAKANEIGERMS---IPMSLLGVIFLAILVAPALLRVMGGAP 302 >gi|167717374|ref|ZP_02400610.1| general secretion pathway protein F [Burkholderia pseudomallei DM98] Length = 352 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 8 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 61 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 115 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 116 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 168 >gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704] gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704] Length = 382 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 12/158 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-----SSDPVR---SEFRRVIE 57 +++ + + D+P ++ + + AG+ V A +V + R E ++ Sbjct: 226 EEKKRQMMLDYPEIVNKLALFLGAGMTVKRAWRKVVEDYERHKTDGNARHAYEEMKKACY 285 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMK 116 G+ +ES R +Q ++S + G L+ L S + + + Sbjct: 286 EMESGVMETESYENFGRRCNVQSYIRLGALLSQNLRKGTKGLTHLLRLESIQAFEERKAR 345 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 AK K ++ L+ P ++++ Sbjct: 346 AKRLGEEAGTKL---LLPMFLMLAIVLIIVIVPAFLSI 380 >gi|297201341|ref|ZP_06918738.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|197712796|gb|EDY56830.1| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 312 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 51/130 (39%) Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V+ G + +++ R + + + V G L+ L L LR ++ Sbjct: 178 VLAAARFGGDVPGALAAAARRPGAEGLLGLAACWRVAVDQGAGLAAGLDRLEGALRAERD 237 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +A ++A A+++ W++ +LP L ++VL++ G L V + Sbjct: 238 QRADLRAQLAGARSTVWMLAALPVLGLGLGAALGADPLHVLLHTGSGLGCLLVGGLLEGV 297 Query: 175 GIMVMRLMIN 184 G+ ++ Sbjct: 298 GMWWATRIVR 307 >gi|197121075|ref|YP_002133026.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196170924|gb|ACG71897.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 417 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ A+ +I Q+ R V G + ++++ Sbjct: 83 FTRQFSVMID-------AGLPLVQALDIIATQADNAEFRKVLSTVKVKVESGSTFADALG 135 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + F ++ ++GG L L L + + + +V+ A Sbjct: 136 EHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMVYPA 187 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ V+ L+ F P + D G M Sbjct: 188 IVLTVAVGVVAVLIAFVVPT-FEKMFKDFGGAM 219 >gi|239943092|ref|ZP_04695029.1| hypothetical protein SrosN15_19016 [Streptomyces roseosporus NRRL 15998] gi|239989550|ref|ZP_04710214.1| hypothetical protein SrosN1_19776 [Streptomyces roseosporus NRRL 11379] gi|291446568|ref|ZP_06585958.1| predicted protein [Streptomyces roseosporus NRRL 15998] gi|291349515|gb|EFE76419.1| predicted protein [Streptomyces roseosporus NRRL 15998] Length = 322 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 12/174 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQS---SDP---------VRSEFRRVIETQHLGLSLSESIS 70 + +RAG A+ + + P + V+ G + ++ Sbjct: 144 VAGELRAGREPGQALLAALREGLAEDGPATTTASGSRLGEAEAAVLAAARFGGDVPAALR 203 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + +S + V G L+ L L LR+ + + +++A A ++ Sbjct: 204 QAAEGPGMGGLSGMAACWRVAVDGGAGLAAGLERLEAALREDRRRREELRAQLAGAWSTV 263 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL++ P G L V + G+ R ++ Sbjct: 264 VVLALLPVAGLGLGAALGAEPLRVLLHTPGGLACLAVGSFLEAAGLCWARRIVR 317 >gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM 10642] gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM 10642] Length = 634 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + K P+ L + +GL + A+ V+ + E R++ + Sbjct: 409 LYEYRSYKLRKLEKHLPDFLRGLGSLNESGLNIVTAIKVLSATQLGVLTEEVRKIRKDIE 468 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVI 88 G ++E++ R + VS ++I Sbjct: 469 WGRLVTEALERFEDRVGSSLVSKVVSII 496 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 58/152 (38%), Gaps = 5/152 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59 + + R AK + +++ + G P+ + + + + V EF ++ Sbjct: 125 SFIARSRKAKIDATLYHVASLMLGMAKGGTPLLELFRTVAEERHVTGEVGKEFSIIVRNV 184 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKA 117 + G + SI + P Q++ F ++ + G +LSE L ++ + +R+ Sbjct: 185 TVFGKDIITSIKEVAATTPSQKLRDFLEDLAGVLEGGSSLSEFLEFKIAHLAEERERAYQ 244 Query: 118 -KVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + + + A+ ++ P + + Sbjct: 245 LYISSYEILAEIYVAMLIVAPLFSLIVFVVMN 276 >gi|229142566|ref|ZP_04271047.1| hypothetical protein bcere0013_56220 [Bacillus cereus BDRD-ST26] gi|228640860|gb|EEK97210.1| hypothetical protein bcere0013_56220 [Bacillus cereus BDRD-ST26] Length = 184 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + + ++ E +V G ++ + +E+ Sbjct: 14 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNETFNFRELV 73 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 74 FFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 133 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ S L G + L V Sbjct: 134 IVIMLMSKEAYGFLAGSMMGKIALAV 159 >gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 410 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 10/150 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + F ++AG+ + +A A++ QS P++ V G +LS +++ Sbjct: 70 NEQFVVFCRQFATMIKAGISIVEATAILAEQSESKPLKKTLAEVTAELRKGNTLSGAVAA 129 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R P F ++ + G ++ E L L+ + KV+ Sbjct: 130 YPRIFPS----IFVHMVRAGEEAG-SMEETLERLAVYFEKAHVTREKVK---SAMTYPLI 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + F + L+ F P + + G Sbjct: 182 VSVMAVFVIIFLLKFMIPR-FQAMFAELGG 210 >gi|228938211|ref|ZP_04100826.1| hypothetical protein bthur0008_8790 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971089|ref|ZP_04131722.1| hypothetical protein bthur0003_8710 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788612|gb|EEM36558.1| hypothetical protein bthur0003_8710 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821444|gb|EEM67454.1| hypothetical protein bthur0008_8790 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 184 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + + ++ E +V G ++ + +E+ Sbjct: 14 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNETFNFRELV 73 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 74 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 133 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ S L G + L V Sbjct: 134 IVIMLMSKEAYGFLAGSMMGKIALAV 159 >gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC 13032] gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032] Length = 258 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 7/184 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 75 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + L ++ + + G L + + + ++ + Sbjct: 134 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A +A+A I+ LP + + +L G LL + G ++ Sbjct: 190 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 249 Query: 181 LMIN 184 ++ Sbjct: 250 KILQ 253 >gi|119714035|ref|YP_919177.1| integral membrane protein [Nocardioides sp. JS614] gi|119525944|gb|ABL79314.1| integral membrane protein [Nocardioides sp. JS614] Length = 297 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 3/148 (2%) Query: 32 PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV- 90 + A+ + + +R R ++ L L +++ + + +S+ Sbjct: 115 GLEQALPATLDGAPALLRRPLRNLVNALDLRTPLPVALAHFADEVDDRGADKVVIALSLT 174 Query: 91 QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 Q G+L L L+ R M+ KV A + + + ++ L G Sbjct: 175 AQQRAGSLKRVLTTLASNTRAELEMRRKVLAERNGVRRQSNQVALGLLALAGLQAVFLRG 234 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + G M+L V AA +G++V Sbjct: 235 WVEP-YSTVYGQMVLAVLAAVY-VGLLV 260 >gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142] gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142] Length = 404 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 13/156 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ K A F F + AG+ + + V+ Q+++P ++ + Sbjct: 58 LNNVSVKDKAIFSRQF-------SVMINAGVAIVRCLGVLADQATNPKLKKALLAISAEV 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+SLSE++ + + + GG L E L L+++L D ++ ++ Sbjct: 111 QQGVSLSEALGKHEDC-----FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + + F ++ + G L Sbjct: 166 KSAMAYPVTVGILAVIVFFAMTIFLIPVFAGIFEDL 201 >gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614] Length = 300 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + KKR A+F LD++ S++AG S+A+ + + + I+ Sbjct: 146 LMDKAKKRRAEFRRTLSVYLDLVAMSMQAGRGHSEALPASAAIGTGWAFTHLQDAIDGAR 205 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 G + ++ ++ ++E++ + +++ ++ G + L + LR Sbjct: 206 FSGTTPWHALGQLGDRFGIRELTDLDSALTLANEDGAKVRATLVARAETLR 256 >gi|183602333|ref|ZP_02963700.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp. lactis HN019] gi|219682691|ref|YP_002469074.1| type II secretion system protein [Bifidobacterium animalis subsp. lactis AD011] gi|241190267|ref|YP_002967661.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195673|ref|YP_002969228.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218547|gb|EDT89191.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp. lactis HN019] gi|219620341|gb|ACL28498.1| type II secretion system protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248659|gb|ACS45599.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250227|gb|ACS47166.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793254|gb|ADG32789.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis V9] Length = 244 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 84 FSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + +V +LG + L + + LR R + A +M K++A ++ +LP V Sbjct: 141 VAVASAVSLELGCPAARCLEAVRAGYLRARLQDDLRANAFAMP-KSTARMLLALPAVVVF 199 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 L + +L +G +L + + G++ M+ ++ D Sbjct: 200 LGELLGADPLGMLFGSAQGRAMLCLGTICYVGGLLWMQRLLAAD 243 >gi|149917202|ref|ZP_01905702.1| type II secretion system protein [Plesiocystis pacifica SIR-1] gi|149822118|gb|EDM81511.1| type II secretion system protein [Plesiocystis pacifica SIR-1] Length = 382 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 7/164 (4%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 V AGLP+ + ++ Q+ +P ++ G SLSE++ + Sbjct: 52 STMVDAGLPLVQCLDMLSSQAENPRFGEMLGKIKAEVETGKSLSEAMGLYPKVFD-DLFR 110 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + GG L ++ L ++ +V+ + A + + + T Sbjct: 111 NLVAA----GEAGGILDLIFRRMATYLEKSAKLRRQVKGALVYPVAIIVVGLLVMVIMMT 166 Query: 143 LVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 V T L G + +A + + G ++ ++ Sbjct: 167 FVLPTFEDMFKDLGAGSLPGPTRIVLAISHFITGHFLLLTIVGI 210 >gi|329947749|ref|ZP_08294766.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon 170 str. F0386] gi|328523577|gb|EGF50673.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%) Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + LG L++ L ++ + + + +A +A + +A ++ LP L Sbjct: 21 VASCRLSTALGAPLADILEAVAGGVAESGHAEASRRAALAGPRTTARLLACLPVVGLGLG 80 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +L++ G + + M++G +V R +I Sbjct: 81 MLVGADPTALLLDGGLGSAVGVLGIVLMVVGHLVTRRLIR 120 >gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167] gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167] Length = 271 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 71/176 (40%), Gaps = 1/176 (0%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 +++ R KF L ++ + +G P+ + + + V EFRR++ + G Sbjct: 87 MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +I R + +P + + +++ + G++++ LA + R+ K + Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ +++ + + ++ S + + +P +LL IG + Sbjct: 207 ALSLMMEVYVVSAQLLPILLIILTISLAPLGSVPINPEALILLMFLIYVPAIGSVF 262 >gi|300779982|ref|ZP_07089838.1| membrane protein [Corynebacterium genitalium ATCC 33030] gi|300534092|gb|EFK55151.1| membrane protein [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 8/128 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 L +V ++RAG V++A A Q+ + SE RRV G S + ++ Sbjct: 64 LGHLVAALRAGSSVAEACARAAEQTADNAPADLASELRRVAAHTRSGGSGAAILAA---- 119 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 PL E+ + + ++LG +++ L + L + + A +A+A ++ Sbjct: 120 SPLPELRDVGVLWGLSAKLGIPVADLLGSARSRLDNAVRHRNATTAALAGPRATAVVLSV 179 Query: 136 LPFCVSTL 143 LP + Sbjct: 180 LPLAGILM 187 >gi|283783891|ref|YP_003363756.1| protein transport protein HofC [Citrobacter rodentium ICC168] gi|282947345|emb|CBG86890.1| protein transport protein HofC [Citrobacter rodentium ICC168] Length = 400 Score = 47.8 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +SD + ++ GQ D ++ + G LS ++++ Sbjct: 62 EVIQQLATLLQAGLTLSDGLWLLAGQHPDKQWQALLESLARELENGAPLSSALAQWPDIF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGS 135 P + + G L+ L L ++ + +++ +A + I+ Sbjct: 122 P---------PLYLAMIRTGELTGKLDVCCSELARQQKAQKQLRDKVAKALRYPTIILTM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVM 179 V +++F P + + N P ++ VA G +V+ Sbjct: 173 AVMVVLAMLHFVLPEFAAIYRTFNTPLPALTQWIIAVANGSARWGWLVI 221 >gi|86157052|ref|YP_463837.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773563|gb|ABC80400.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 417 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ A+ +I Q+ + R V G + ++++ Sbjct: 83 FTRQFSVMID-------AGLPLVQALDIIATQADNVEFRKVLSTVKVKVESGSTFADALG 135 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + F ++ ++GG L L L + + + +V+ A Sbjct: 136 EHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMVYPA 187 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ V L+ F P + D G M Sbjct: 188 IVLTVAVSVVGILIAFVVPT-FEKMFKDFGGAM 219 >gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 409 Score = 47.8 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R + + + AG+P+ A+ ++ Q+ +R V+E G +L+ Sbjct: 62 RKKVKIKELAVFCRQFATIIAAGIPILQALNILARQAESRRLRETITGVVEQLESGRTLA 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES+ R P + F ++I ++GG L +AL L+ +++ K++ Sbjct: 122 ESLKRYRDVFP----NIFISMIE-AGEVGGVLDKALTRLADHFEKEHDIREKIK---SAM 173 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 II V+ L+ F P ++ +L Sbjct: 174 TYPVLIICLAICAVTALLTFVLPKFIQML 202 >gi|332527682|ref|ZP_08403725.1| general secretion pathway protein F [Rubrivivax benzoatilyticus JA2] gi|332112082|gb|EGJ12058.1| general secretion pathway protein F [Rubrivivax benzoatilyticus JA2] Length = 405 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ D + E + + G + +++ R E Sbjct: 75 LAGLVGSGLPLERALTALADEAEDQRQRELLVHLRSEVNAGSPFARALATAPR-----EF 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L++ L DR+ ++AK+ + A + V+ Sbjct: 130 DEVYRAVVAAGEQSGALGAVLERLAQDLEDRQALRAKLLGAML---YPAIVSLIALVIVT 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 LV + P V N + LL V M I V Sbjct: 187 FLVTYVVPQVATVFSNTKQSLPLLTV--VMMAISDFV 221 >gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured verrucomicrobium HF0500_16O23] Length = 417 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 60/156 (38%), Gaps = 9/156 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59 ++ ++R L D N + ++AG+P++ A+ ++ S +S +++ Sbjct: 64 VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIPKSVCAQLLADV 123 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS S+ + P ++ + G++ E L L+ ++ K+ Sbjct: 124 REGRTLSVSMGKFPEIFPDMYLNMVK-----AGESSGSMVEVLKRLADHYERFAEVRQKI 178 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +++G + + + P +M + Sbjct: 179 ---ISALVYPVFVMGLGFLLIFVFMSYILPKFMTIF 211 >gi|228982961|ref|ZP_04143220.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407] gi|228777144|gb|EEM25452.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407] Length = 321 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 10/190 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLP-VSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K L + + P+A+D I+R + + + + +P+R + Sbjct: 132 IKMLAVDLMEQIEEQLPSAIDHIIR-ISSKYGDMKSIIYETARSCDNPLREILENISRKM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ--LGGNLSEALANLSRILRDRKNMKA 117 G + + ++ + + E L +L IL +K Sbjct: 191 ISG-DAETVLLQFGEEYDNVWINSLVFTLISYMEDASKTTTIENLRHLRNILEKENRLKK 249 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + A + I L L +P + G + + G + Sbjct: 250 SRVTDAKYSVAINYFIAVLASGAGLLNIVLNPKGREFFFSSFLGLICF-----LLGYGAV 304 Query: 178 VMRLMINFDV 187 + +M+N + Sbjct: 305 LGTIMLNIKM 314 >gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] Length = 272 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 7/184 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 89 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 147 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + L ++ + + G L + + + ++ + Sbjct: 148 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A +A+A I+ LP + + +L G LL + G ++ Sbjct: 204 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 263 Query: 181 LMIN 184 ++ Sbjct: 264 KILQ 267 >gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701] gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701] Length = 466 Score = 47.4 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +G+P+ + ++ Q P+ R V G+SL ++ R + Sbjct: 135 LSALVDSGVPIVRGLTLVAKQQKKPIFRQALEAVASDVSQGVSLGVAMRRWPKV-----F 189 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + +LGG L E L L+ +L ++ +++ I ++ ++ Sbjct: 190 DRITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYPVIVLLIAIAVFLGMT 249 Query: 142 TLVYFTSPGYMNVL 155 + T L Sbjct: 250 IFLIPTFADIFEQL 263 >gi|83721515|ref|YP_440569.1| general secretion pathway protein F [Burkholderia thailandensis E264] gi|167582886|ref|ZP_02375760.1| general secretion pathway protein F [Burkholderia thailandensis TXDOH] gi|167621026|ref|ZP_02389657.1| general secretion pathway protein F [Burkholderia thailandensis Bt4] gi|83655340|gb|ABC39403.1| general secretion pathway protein F [Burkholderia thailandensis E264] Length = 405 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + LL + M + V Sbjct: 169 LAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSDFV 221 >gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured Verrucomicrobiales bacterium HF4000_13K17] Length = 417 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 9/155 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQH 60 + ++R L D N + ++AG+P++ A+ ++ S +S +++ Sbjct: 65 RRFGQRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIPKSVCAQLLADVR 124 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +LS S+ + P ++ + G++ E L L+ ++ K+ Sbjct: 125 EGRTLSMSMGKFPEIFPDMYLNMVK-----AGESSGSMVEVLKRLADHYERFAEVRQKI- 178 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +++G + + + P +M + Sbjct: 179 --ISALVYPMFVMGLGFLLIFVFMSYILPKFMTIF 211 >gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316] gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316] Length = 486 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 10/133 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEFRRV 55 I+KR L D+P + +V + AG+ + + + + ++ E R Sbjct: 330 IEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLSENYVAKLKAGQEKSFAYEELLRT 389 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114 G S S++ Q+ + ST++S + G L L +R ++ + Sbjct: 390 TRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNLRKGNSELLRLLNEEARKSQEDRL 449 Query: 115 MKAKVQALSMEAK 127 +A+ K Sbjct: 450 DRARKAGEEAGTK 462 >gi|289177984|gb|ADC85230.1| hypothetical protein BIF_00599 [Bifidobacterium animalis subsp. lactis BB-12] Length = 264 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 84 FSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + +V +LG + L + + LR R + A +M K++A ++ +LP V Sbjct: 161 VAVASAVSLELGCPAARCLEAVRAGYLRARLQDDLRANAFAMP-KSTARMLLALPAVVVF 219 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 L + +L +G +L + + G++ M+ ++ D Sbjct: 220 LGELLGADPLGMLFGSAQGRAMLCLGTICYVGGLLWMQRLLAAD 263 >gi|295678177|ref|YP_003606701.1| general secretion pathway protein F [Burkholderia sp. CCGE1002] gi|295438020|gb|ADG17190.1| general secretion pathway protein F [Burkholderia sp. CCGE1002] Length = 405 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A++V+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALQQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221 >gi|121593088|ref|YP_984984.1| general secretion pathway protein F [Acidovorax sp. JS42] gi|222109858|ref|YP_002552122.1| general secretion pathway protein f [Acidovorax ebreus TPSY] gi|120605168|gb|ABM40908.1| general secretion pathway protein F [Acidovorax sp. JS42] gi|221729302|gb|ACM32122.1| general secretion pathway protein F [Acidovorax ebreus TPSY] Length = 409 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ D R + + G + + ++++ R E Sbjct: 79 LAGLVGSGLPLERALTALAEEADDERQRHLLAALRAEVNAGSTFARALAQHPR-----EF 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L+E L +L+ L R+ ++AK+ ++ I + + Sbjct: 134 SDIYCAVIGAGESSGGLAEVLDSLADDLEQRQALRAKLIGAALYPAIVTVIAIVIVLFLV 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V P +V R L VA Sbjct: 194 GYVV---PQVASVFAGTKRALPFLTVAML 219 >gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629] Length = 408 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 11/135 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRR 54 K+R + ++P + + + +G+ V A I ++ P E Sbjct: 249 QKERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLV 308 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRK 113 G++ ++ + + L +I G + E L S D + Sbjct: 309 TEREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDER 368 Query: 114 NMKAKVQALSMEAKA 128 + A K Sbjct: 369 RLLALKLGEEAGTKM 383 >gi|313681843|ref|YP_004059581.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM 16994] gi|313154703|gb|ADR33381.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM 16994] Length = 415 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 10/146 (6%) Query: 8 RTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 R K D+ A+ + AG+ + D++ I ++D +++ + E + G SL Sbjct: 65 RKKKLKQDNLIAAIRQLAVMANAGISIHDSLKEIAEATTDKTLQTVLGTMAEDINAGRSL 124 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+S E+ S + + GN++EAL L+ +L + ++ + Sbjct: 125 SQSAHNFHY-----ELGNLSLAMIELGEKTGNMAEALHKLADMLEE---IRRNIIKFKKA 176 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151 ++ ++ + L+ + P + Sbjct: 177 MAYPRNVMIAMAIAFTVLISYVVPQF 202 >gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 474 Score = 47.4 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 38 AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMPLQE-VSFFSTVISVQSQLG 95 Q+ D + + + LG + ++ + R +E + + + G Sbjct: 136 ERAYRQTQDDIDELLDTLAREEQLGFAAGTTLGALSARRAHSRERIRELGLCLRMNETTG 195 Query: 96 GNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 L++ L + + + + + AL+ K + I+ LPF + + + Sbjct: 196 APLAQTLRAAAEHAEEHLDALLGRESALTGP-KTTGKILSWLPFIGLAMGWLMGTDPVGA 254 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L G + L+G ++ Sbjct: 255 LTGSLAGLLTGFFGITLALLGRHWTARLV 283 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 15/132 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---LGLSLSESISRMVRY 75 L+++ +RAGL ++ A+ + + E R + + L L++S Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRA----LAHEERAISDAIEHITLTLTVSADWQAAWDG 391 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSMEAKASAWII 133 + + +++ G S L + + R +R+ + AK + ++ Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAER------ASAKLAVALV 445 Query: 134 GSLPFCVSTLVY 145 L C Sbjct: 446 LPLGLCSLPAFI 457 >gi|161523241|ref|YP_001578253.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|189348902|ref|YP_001944530.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|221202226|ref|ZP_03575261.1| general secretion pathway protein F [Burkholderia multivorans CGD2M] gi|221208713|ref|ZP_03581712.1| general secretion pathway protein F [Burkholderia multivorans CGD2] gi|221214338|ref|ZP_03587310.1| general secretion pathway protein F [Burkholderia multivorans CGD1] gi|160340670|gb|ABX13756.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|189332924|dbj|BAG41994.1| general secretion pathway protein F [Burkholderia multivorans ATCC 17616] gi|221165993|gb|EED98467.1| general secretion pathway protein F [Burkholderia multivorans CGD1] gi|221171345|gb|EEE03793.1| general secretion pathway protein F [Burkholderia multivorans CGD2] gi|221178020|gb|EEE10432.1| general secretion pathway protein F [Burkholderia multivorans CGD2M] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ QS D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++S+ R E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALSQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + LL + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSGFV 221 >gi|305664054|ref|YP_003860342.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] gi|304378623|gb|ADM28462.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] Length = 302 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 5/161 (3%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + + + V G + ++ P+ R +E +G ES Sbjct: 89 INMLRKQVLDFIPLTSSYVATGASLLTSLEESAKIIGRPLSDYVYRYVEFVKMGRDPVES 148 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + P ++ + I++ GG +SE L R R ++ +++ +E Sbjct: 149 FDECFKIFPS-DLRAILSSIAIAITSGGRVSEMLMYADRYSRQMARLE-ELRRNRIEGYK 206 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + + F +S +V + + G L+ + Sbjct: 207 AVIFLAIVAFIISAIVTLV---LLKTMTRIAIGTPLITGSI 244 >gi|323527883|ref|YP_004230036.1| general secretion pathway protein F [Burkholderia sp. CCGE1001] gi|323384885|gb|ADX56976.1| general secretion pathway protein F [Burkholderia sp. CCGE1001] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++S+ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALSQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221 >gi|282897952|ref|ZP_06305947.1| type II secretion system protein [Raphidiopsis brookii D9] gi|281197096|gb|EFA71997.1| type II secretion system protein [Raphidiopsis brookii D9] Length = 419 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 64/188 (34%), Gaps = 28/188 (14%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 A F F V +G+ + ++ +I Q +P ++ ++ G++LS+ Sbjct: 81 KAIFSRQF-------ATLVNSGVTIIKSLDIISPQCPNPKLKKALNQISTDIKTGINLSD 133 Query: 68 SISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + + ++GG L + L L+++L D ++ ++++ Sbjct: 134 SMKK------HPDCFDALYITMVQAGEVGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYP 187 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFML 173 ++ ++ + + + V ++ Sbjct: 188 IFVGCFAIAIALGMTIFIIPIFANVFKNMGVELPIITKILISFSQTLNSWGFLVIITLII 247 Query: 174 IGIMVMRL 181 +G+ ++ Sbjct: 248 MGLFTIKQ 255 >gi|186477816|ref|YP_001859286.1| general secretion pathway protein F [Burkholderia phymatum STM815] gi|184194275|gb|ACC72240.1| general secretion pathway protein F [Burkholderia phymatum STM815] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A++V+ QS D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++S+ + + + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALSQHPK-----DFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKII 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221 >gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus sp. ART55/1] Length = 443 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRS 50 ++ + KKR+ + + ++P +D + + AG+ V A A IV + + Sbjct: 282 IQGMEKKRSDELMSEYPELVDKLTLYLGAGVTVRGAFARIVKSGREDCAGTDQGGSVLTR 341 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E + G+S SE+ M + L +++S + G + L ++ + Sbjct: 342 ELIYTLNEIQAGVSESEAYYNMGHRINLPMYIKLMSLLSQNVKKGTR--DILIMMAGEEQ 399 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + + ++ E + ++ + +V P +N Sbjct: 400 NAMQTRKEMAKRKGEEAGTKLLLPMVVLLGVVMVIVMLPAIINF 443 >gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 274 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 4/151 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + K R KF + P +D+ A +P+ D + + VR+ ++ Sbjct: 116 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 175 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKA 117 + + R + L E + + + + G L E L+ LS L + Sbjct: 176 IMTREKEGCLKRFCNEVNLPEANILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIAR 234 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + +A+ + A+ + + + + YFT+ Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTN 265 >gi|254432709|ref|ZP_05046412.1| pili biogenesis protein [Cyanobium sp. PCC 7001] gi|197627162|gb|EDY39721.1| pili biogenesis protein [Cyanobium sp. PCC 7001] Length = 418 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ ++ ++ Q P+ + V + G+S +S+ R + Sbjct: 87 LAALVNAGVPIVRSIDLMASQQKMPLFKRALESVSLELNQGVSFGDSMRRWPKV-----F 141 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + GG L E+L L+++L ++ +++ + Sbjct: 142 DRLTIAMVEAGEAGGVLDESLRRLAKLLEANAKLQNQIKGAMA---YPLAVFTIAILVFL 198 Query: 142 TLVYFTSPGYMNVL 155 + F P + + Sbjct: 199 GMTIFIIPTFAKIF 212 >gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021] gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021] Length = 311 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 12/164 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-----FRRV 55 +K + F LD++ ++ G V +A+ + V S E R+ Sbjct: 149 IKRDAARMRRDFRHVVGAFLDLVAMNLAGGRGVPEALMMAVSVGSPGADDEGANWAMNRI 208 Query: 56 IETQH----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 E +G++ +++ ++ + + E+ S + + + G + +L + LR Sbjct: 209 REALGNARIVGITPWQALGQLGDEINVDELRDLSAALGLVADDGAKVRASLTARAATLRR 268 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 R+ + + ++ + ++ L C +++ + P M +L Sbjct: 269 RELAEVE---GQAGERSQSMLVAQLLLCAGFVIFLSFPAAMKML 309 >gi|170694277|ref|ZP_02885431.1| general secretion pathway protein F [Burkholderia graminis C4D1M] gi|170140700|gb|EDT08874.1| general secretion pathway protein F [Burkholderia graminis C4D1M] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221 >gi|330815001|ref|YP_004358706.1| General secretion pathway protein F [Burkholderia gladioli BSR3] gi|327367394|gb|AEA58750.1| General secretion pathway protein F [Burkholderia gladioli BSR3] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 27/195 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +++AV+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLTAGLPLGESLAVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ +++ R E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLASALAEHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------- 170 I + V+ L+ + P +NV + + L + Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSDFVRHWW 225 Query: 171 -FMLIGIMVMRLMIN 184 MLIG++V+ ++ Sbjct: 226 WAMLIGVVVLAWIVK 240 >gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus silvanus DSM 9946] gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM 9946] Length = 408 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 20/166 (12%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78 + + AGLP+ A+A++ Q+ + FR +I+ G S SE+++R + Sbjct: 74 LATMLSAGLPIVQALAILEKQTE---KKSFRAIIKDVRTEVEGGASFSEALARHPKL--- 127 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + GNL L LS L ++ K+++ + + Sbjct: 128 --FNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSALTYPTIVFVFAIGVTY 185 Query: 139 CVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179 + T + P + N+L + P L+ V+ GI ++ Sbjct: 186 FLLTGIV---PQFANILTSLNAQLPPLTRFLIAVSDFLKSSGIFLL 228 >gi|187925907|ref|YP_001897549.1| general secretion pathway protein F [Burkholderia phytofirmans PsJN] gi|187717101|gb|ACD18325.1| general secretion pathway protein F [Burkholderia phytofirmans PsJN] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 76/195 (38%), Gaps = 27/195 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMASIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAF----- 171 I + V+ L+ + P +NV + P +++ + F Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWW 225 Query: 172 --MLIGIMVMRLMIN 184 MLIG++V+ ++ Sbjct: 226 WAMLIGVIVLVYLVR 240 >gi|228969253|ref|ZP_04130131.1| hypothetical protein bthur0004_59740 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790446|gb|EEM38169.1| hypothetical protein bthur0004_59740 [Bacillus thuringiensis serovar sotto str. T04001] Length = 174 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 52/153 (33%), Gaps = 1/153 (0%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++ + + ++ E +V G ++ + +E+ Sbjct: 4 VANALQISNNAKRVLVQVKPMMHGSIQEEIEKVSLLLEGGTTIHRAFRGFNETFNFRELV 63 Query: 83 FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF ++ V + G N + L +++ +K A++++ +A+ + + + Sbjct: 64 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLAQAQRAFVQNCLIVIAMP 123 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ S L G + L + Sbjct: 124 IVIMMMSKEAYGFLAGSMMGKIALLANMIILFF 156 >gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656] gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656] Length = 408 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 11/135 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRR 54 K+R + ++P + + + +G+ V A I + D P E Sbjct: 249 QKERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLV 308 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRK 113 G++ ++ + + L +I G + E L S D + Sbjct: 309 TEREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDER 368 Query: 114 NMKAKVQALSMEAKA 128 + A K Sbjct: 369 RLLALKLGEEAGTKM 383 >gi|149174468|ref|ZP_01853094.1| General secretory pathway protein F [Planctomyces maris DSM 8797] gi|148846578|gb|EDL60915.1| General secretory pathway protein F [Planctomyces maris DSM 8797] Length = 401 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 16/155 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K + +K F + + V AG+PV+ A+ I Q +P + + ++ Sbjct: 58 KRVPRKEIIYFTNQ-------MAIMVDAGVPVATALEGISKQIENPVLAEILAHIQKSVE 110 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S +++ R V+ + S+ G + + L ++ + + +V+ Sbjct: 111 SGSDFSAALADFPRQFDRTYVN-----LIKASEASGTMPQMLNRIAAQAEEEQETIQQVK 165 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M A ++ L+ + P M + Sbjct: 166 GALM---YPAIMLVMCVGICIFLLTYVFPKLMPMF 197 >gi|91785779|ref|YP_560985.1| putative general secretory pathway protein F [Burkholderia xenovorans LB400] gi|91689733|gb|ABE32933.1| Putative general secretory pathway protein F [Burkholderia xenovorans LB400] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 76/195 (38%), Gaps = 27/195 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A++V+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAF----- 171 I + V+ L+ + P +NV + P +++ + F Sbjct: 169 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWW 225 Query: 172 --MLIGIMVMRLMIN 184 MLIG++V+ ++ Sbjct: 226 WAMLIGVVVLVYLVR 240 >gi|296157580|ref|ZP_06840415.1| general secretion pathway protein F [Burkholderia sp. Ch1-1] gi|295892352|gb|EFG72135.1| general secretion pathway protein F [Burkholderia sp. Ch1-1] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A++V+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTITMMALSGFV 221 >gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110] gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110] Length = 404 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 13/156 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ K A F F + AG+ + + V+ Q+++P ++ + Sbjct: 58 LNNVSVKDKAVFSRQF-------SVMINAGVAIVRCLGVLSEQATNPKLKKALSAISAEV 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+SLSE++ P + + GG L E L L+++L D ++ ++ Sbjct: 111 QQGISLSEAL----EKHPSC-FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + + F ++ + G L Sbjct: 166 KSAMAYPVTVGILAVIVFFAMTIFLIPVFAGIFEDL 201 >gi|121608600|ref|YP_996407.1| general secretion pathway protein F [Verminephrobacter eiseniae EF01-2] gi|121553240|gb|ABM57389.1| general secretion pathway protein F [Verminephrobacter eiseniae EF01-2] Length = 412 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 I V +GLP+ A+ + ++ D + + + G + ++++ R E Sbjct: 80 IAGLVSSGLPLERALTCLSQEADDERQRHLVAALRAEVNAGSMFARALAQHPR-----EF 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GNL+ L L+ L +R+ +KA++ ++ + G++ + Sbjct: 135 SDIYCAVISAGEHSGNLALVLERLADDLEERQALKAQLIGAALYPAIVTLVAGAIVLFLV 194 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V P +V + R LL A M + V Sbjct: 195 GYVV---PQVASVFVGTKRALPLLTQA--MMGLSAFV 226 >gi|114564899|ref|YP_752413.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] gi|114336192|gb|ABI73574.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] Length = 404 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + D ++ + E G LS ++++ Sbjct: 72 MYSLTRSGIPILRAIAGLSETTHSDRMKKALDDISEQLTSGRPLSSAMNQHPDIFDS--- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++I V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 -LFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPMFVLIAITIAMV 183 Query: 142 TLVYFTSPGYMNVL 155 L P + ++ Sbjct: 184 ILNIMVIPKFADMF 197 >gi|307731501|ref|YP_003908725.1| general secretion pathway protein F [Burkholderia sp. CCGE1003] gi|307586036|gb|ADN59434.1| general secretion pathway protein F [Burkholderia sp. CCGE1003] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+AV+ QS D +R + Sbjct: 61 RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ + E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALAQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + L + M + V Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221 >gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46] gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46] Length = 217 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 II + +G+P+S A+ ++ + R+ +G + + + Sbjct: 81 IIGACLSSGMPLSQAMEAAADGANPELAEPLRQCSARLAVGA--HSAWDSLAA---TPAL 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140 +T S+ G L++AL + + R + + A+ A + + + LP V Sbjct: 136 EPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFV 195 Query: 141 STLVYFTSPGYMNVLI 156 + T G + + Sbjct: 196 VLGLVPTIAGLADEMF 211 >gi|254251014|ref|ZP_04944332.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] gi|124893623|gb|EAY67503.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] Length = 405 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ QS D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMASIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + R +K K+ Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + LL + M + V Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSGFV 221 >gi|313683366|ref|YP_004061104.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM 16994] gi|313156226|gb|ADR34904.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM 16994] Length = 412 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 LD + + AG+P++ +A V + DP + + F V+ G SLS ++S+ + Sbjct: 77 FLDQLSVMLDAGMPINICLADTVDNTEDPMLHAIFSEVLSNIESGQSLSFALSKYQTQLG 136 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +S F + G L+ A+A LS I + + Q L + +II ++ Sbjct: 137 KLTLSMFELG-----EQTGTLNIAIAKLSTIF---QQIHNNRQMLKKATRYPLFIIIAMS 188 Query: 138 FCVSTLVYFTSPGYMNVL 155 ++ F P + Sbjct: 189 IAFIIVITFIVPQFQTFF 206 >gi|330810078|ref|YP_004354540.1| type II secretion system protein F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378186|gb|AEA69536.1| putative type II secretion system protein F [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 403 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 17/176 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ V Q+ + V G+ L+E+++ R Sbjct: 69 ATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALA--ARPRD 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E+ + + G+L++ + L+ + +R N++ K+ + + ++ Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGLVSVAIV 183 Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + V P ++ G +L G M Sbjct: 184 IFLLSYVVPQVVSAFSQARQDLPALTVAMLTASDFIRAWGWLCFGVLAGGFWSWRM 239 >gi|227327076|ref|ZP_03831100.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 401 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 17/180 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ +A+ ++ Q P R R V G S SE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCVLRDVRTHVAQGNSFSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P+ S + +L G L E L++ + ++ KV + + Sbjct: 118 YPHIFPVLYRSLIAVG-----ELTGKLDECCLQLAQQQEKQSRLQQKVIKAL---RYPCF 169 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH---MLLGVAAAFM---LIGIMVMRLMI 183 ++ ++ P + + + P LL +A IG++V+ +I Sbjct: 170 VLAIAIVVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLNLAGIITDYGFIGLLVLSGLI 229 >gi|330948965|gb|EGH49225.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 55 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ Sbjct: 2 HRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFL 55 >gi|167560917|ref|ZP_02353833.1| general secretion pathway protein F [Burkholderia oklahomensis EO147] gi|167571807|ref|ZP_02364681.1| general secretion pathway protein F [Burkholderia oklahomensis C6786] Length = 405 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A++V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ +++ R E+ + + G L L+ L+ + +R +K K+ Sbjct: 114 GGHSLAVALAEHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIV 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + LL + M + V Sbjct: 169 LAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSDFV 221 >gi|320324666|gb|EFW80740.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. B076] Length = 403 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ V Q+ + + G+ L+E+++ ++ Sbjct: 73 LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA-----ARSRDF 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L+ + L+ + +R ++ K+ + + ++ + Sbjct: 128 PDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|134096981|ref|YP_001102642.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|291006274|ref|ZP_06564247.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|133909604|emb|CAL99716.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] Length = 267 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 5/187 (2%) Query: 2 KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 +++ +R+ + + + ++V +RAG + A S+ + FR + Sbjct: 75 RYVRSRRSFRVGVERSAELSGGIRLLVAGLRAGAHPAVAAEGAAADSAPAISGVFRDLAS 134 Query: 58 TQHLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 LG + + L++ ++ + + G L++ L + R + R Sbjct: 135 AAKLGGDIPTVLDNGGHPAELRQPLARLGRAWRLAERHGVALADLLDAVRRDVDHRVAFI 194 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 +++ +A+A ++ LP L + VL G +L V A + G+ Sbjct: 195 RDLESKMAGPRATAAMLAGLPLLGLLLGEAVGAAPLAVLTGQAFGQAVLVVGVALLCAGL 254 Query: 177 MVMRLMI 183 + Sbjct: 255 FWTLRLT 261 >gi|289524034|ref|ZP_06440888.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502690|gb|EFD23854.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 406 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F LD AG+ + A+ ++ Q+ + F I + S+S Sbjct: 70 FFRQLATMLD-------AGITLGMALDMLAEQTEN---KRFAEAIREVKTMVDRGISLS- 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +E S I+ + GG L +L L+ L + ++ K+ + S A Sbjct: 119 -AAMATKREFSKLMVAIARAGEEGGVLESSLDRLATFLERQDELRKKIISAST---YPAV 174 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++G V LV P + ++ ++ Sbjct: 175 VMGFALMVVFILVTVIMPRFTSIFMD 200 >gi|121997134|ref|YP_001001921.1| type II secretion system protein [Halorhodospira halophila SL1] gi|121588539|gb|ABM61119.1| type II secretion system protein [Halorhodospira halophila SL1] Length = 406 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 65/180 (36%), Gaps = 19/180 (10%) Query: 9 TAKFLDDFPN---ALDIIV-------RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57 F+ LD +V +RAG+PV A+ + +++ + V + Sbjct: 52 LDAFIRQLSERAVTLDELVTFTRQFRALLRAGVPVVRALRGLGQNTANARLGRTLEEVAQ 111 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +L +++SR + P +I V + G L E+L ++ L + + Sbjct: 112 GLESGQTLFDAMSRHPKTFP----RLLLAMIRVGEESG-QLEESLERMAASLDQERTTRE 166 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +++ + +++ ++ + + F P + ++ + G + Sbjct: 167 RIK---AALRYPTFVMIAIIAALVVINLFVIPPFADLFDGMGTDLPAMTALLIGFSEGFV 223 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 50/134 (37%), Gaps = 13/134 (9%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +VR+G+P+ A+ + + + + R I G+ E + ++ L + Sbjct: 280 SMAVRSGVPLLQAMDSVAEATDN---AHIARGIRDLRTGIERGEGLYQVAERSGL--FTP 334 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + G +++ + ++ + ++ ++ K S++I + + L Sbjct: 335 LVLQMLAVGEETGQVADMMDQVAEFYE--REVEEDLK------KLSSYIEPFVIGFIGVL 386 Query: 144 VYFTSPGYMNVLIN 157 V + G + Sbjct: 387 VLILALGIFMPMWQ 400 >gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 204 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 3/127 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L++I + AG + A+ ++ +S R R V+ +G + P Sbjct: 68 MLELIGAMLDAGSGIGRALELVADSASPEYRHSLRPVVSALAIGADWETAWRSSEVRTP- 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137 E+ + + G S L + LR + A+ +A ++ + + + SLP Sbjct: 127 -ELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAAALGVRLVVPLGLCSLP 185 Query: 138 FCVSTLV 144 V V Sbjct: 186 AFVCLGV 192 >gi|32477705|ref|NP_870699.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH 1] gi|32448259|emb|CAD77776.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH 1] gi|327537902|gb|EGF24602.1| Type II secretion system F domain protein [Rhodopirellula baltica WH47] Length = 479 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 62/158 (39%), Gaps = 6/158 (3%) Query: 29 AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ ++ ++ Q +++ V + G +LSE++++ + + + Sbjct: 85 AGLPILRSLKILEGNQKPGKLKNALMDVCDEIEGGSTLSEAMAKCPKVFS----RLYVNM 140 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 I + GG L L L+ L +++K KV+ + + + + + T Sbjct: 141 IK-AGEAGGALETILNRLADFLESAESLKRKVKGALIYPVIVVLVATLILTFIMLFIVPT 199 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + D +L +A + + G + +++ Sbjct: 200 FEKMFDEFGLDLPAPTVLLIAMSNYIAGYWFLLILMPI 237 >gi|171913110|ref|ZP_02928580.1| type II secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 411 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 16/153 (10%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 L + + F ++ + +D GL + A+ V+ + P +R R+ E G Sbjct: 66 LKRAQLILFTEELADLMDG-------GLQLEQALRVMHERQESPVLRKVSGRIREQLREG 118 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + S+++ + ++ ++ G+L + L LS + +++++V Sbjct: 119 ATFSKALLQA-----SPSFDEMYCNLATAGEVSGSLPQILRRLSASITQMHDLQSRV--- 170 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A++ G+L + PG++++L Sbjct: 171 VAALVYPAFMFGALIMLLIVFSTVLLPGFVDML 203 >gi|299065324|emb|CBJ36493.1| General Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum CMR15] Length = 403 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+A + Q+ P E + G SLS ++S+ R + Sbjct: 73 LASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALSQHPR-----DF 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL L+ L+ + R + +K++ + ++ V Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ + P ++V N + L + ++ Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|225351275|ref|ZP_03742298.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158731|gb|EEG71973.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 174 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 16/144 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ + ++ + R E + G+S ++ Sbjct: 42 LPLVLEMLSVAIRQGSSIPRALIAVGDIAAGEFGAGLRSAGEQLNKGVSWDDAWPD---- 97 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWII 133 +++ + G + E L L +R ++ AK S ++ Sbjct: 98 --DGDLAVVRDAFASSWHSGASPVERLETAVEQLDWDERSQIEQ------AAAKLSVRLL 149 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157 LP + L F + G + +++ Sbjct: 150 --LPTGLCFLPAFVAVGIIPAVMS 171 >gi|41615061|ref|NP_963559.1| hypothetical protein NEQ268 [Nanoarchaeum equitans Kin4-M] gi|40068785|gb|AAR39120.1| NEQ268 [Nanoarchaeum equitans Kin4-M] Length = 293 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 11/190 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH- 60 I +R A + P A + G P A+ + + D +R E + ++E Sbjct: 107 RIPQRKASIEKNLPYATLYMATIANTGAP-PIAIFRFLSRMPDFGEIRQEAKDIVEMVDV 165 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMK 116 LG L ++ + +Y P ++ + + + GG+LSE L +S + LR + Sbjct: 166 LGQDLLRALDKKAKYSPSKQWAELLIGLKTILESGGDLSEYLYRMSDLYSRELRRKVQQF 225 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + +E + I+G + +L+ G + + +LLG+ + IG+ Sbjct: 226 GDLLMMVVEMYLTLVIVGGFFMIILSLIMGGMGGDIEAI--KVMHILLLGLVIPIVSIGL 283 Query: 177 -MVMRLMINF 185 +++ M+ Sbjct: 284 AFMIKSMLPI 293 >gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain protein [Butyrivibrio crossotus DSM 2876] gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain protein [Butyrivibrio crossotus DSM 2876] Length = 388 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQ 59 +KR + D+P + + + AG+ +A I P + Sbjct: 236 KEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSECLNRI 295 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118 G++ +++ + + +++ G + + + L + + + AK Sbjct: 296 SSGITETDAYMEFGKRCNVMCYIKLGNLLAQNISKGTDNIFQLLKEETEKAFEDRKALAK 355 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 K ++ L+ P +M+ Sbjct: 356 KLGEEAGTKL---LLPMTMMLSVVLIIIVIPAFMSF 388 >gi|312794851|ref|YP_004027773.1| general secretion pathway protein F [Burkholderia rhizoxinica HKI 454] gi|312166626|emb|CBW73629.1| General secretion pathway protein F [Burkholderia rhizoxinica HKI 454] Length = 405 Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 72/187 (38%), Gaps = 20/187 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A F + AGLP+ +A+AV+ Q+ + +R + Sbjct: 61 RKLSQREQALFTRQL-------ASLLIAGLPLDEALAVLTDQAEREYIRELIAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R + + + G L L+ L+ + R +++K+Q Sbjct: 114 GGQSLAGALAQHPR-----DFPDIYRALVSAGEHTGKLGLVLSRLADYIEQRNALRSKIQ 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI----GI 176 + + V+ L+ + P ++V + + LL V + G Sbjct: 169 LAFTYPAIVTLVAFGI---VTFLLSYVVPQVVSVFASTKQQLPLLTVMMMSLSSFVRHGW 225 Query: 177 MVMRLMI 183 + L++ Sbjct: 226 WAILLIV 232 >gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147] gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147] Length = 427 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + K+R K + ++AGLP+ A ++ S+ + + V + Sbjct: 73 LTKMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAMTNLLLDVKNS 132 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SL+ S S+ +Y F + + GG L L L+ + + +K K Sbjct: 133 VEQGNSLASSFSQHPKY-----FDKFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIKKK 187 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 V++ +I + ++ F P + Sbjct: 188 VKSALT---YPIAVIVVAIVLILVMMMFVLPSF 217 >gi|91787227|ref|YP_548179.1| general secretion pathway protein F [Polaromonas sp. JS666] gi|91696452|gb|ABE43281.1| General secretion pathway protein F [Polaromonas sp. JS666] Length = 410 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + ++ D + + + G S + ++S E Sbjct: 80 LAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHP-----GEF 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L L L+ L +R+ +KAK+ A A + V Sbjct: 135 SAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIG---AALYPAIVTLVAIVIVM 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P +V R L VA Sbjct: 192 FLVGYVVPQVASVFAGTKRALPFLTVAML 220 >gi|167646053|ref|YP_001683716.1| type II secretion system protein [Caulobacter sp. K31] gi|167348483|gb|ABZ71218.1| type II secretion system protein [Caulobacter sp. K31] Length = 402 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYM 76 NA+ + + AGL + A+AV V +++P +++ +V + G LS +++ Sbjct: 65 NAIGELAVLLGAGLSLDRALAVCVENATNPTLKAALAQVQKRVREGAPLSRAMTEAGGL- 123 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S + + + G LS AL+ L L + ++ Q +S A + Sbjct: 124 ----FSPMAAAMVEAGEADGRLSVALSRLGETLDRAEALR---QVVSSSMIYPAMLTVVT 176 Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160 + ++ F P + + + P Sbjct: 177 GGVILMMLLFVVPQFEGLFADSPT 200 >gi|328949685|ref|YP_004367020.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450009|gb|AEB10910.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] Length = 399 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 V AG+P++ A+ + +S P +R R V E G SL+++++ P + Sbjct: 67 ATLVAAGVPLTQALVTLAQESPSPALRQATREVRERIEAGESLADAMAHHPEVFP-PLMR 125 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + GG L LA L+ L + + K++ M Sbjct: 126 HLIAA----GEAGGALEVTLARLAEYLERAEELNQKIRTALM 163 >gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 562 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 45/105 (42%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L+ + +VR+G+ + A+ V + P+ +++ G ++E + R Sbjct: 363 PIFLNDLTMAVRSGMDIIRAMQVCAKTNYGPLTKIVKKMAIQMSWGRPVNEVFEDLERTE 422 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ + GG++ + L +++ MK ++ A Sbjct: 423 KSLIAKRIASILKECAVSGGDIKDILTSVTVHAYKLSEMKREISA 467 >gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107] gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107] Length = 357 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +++G+P++ + +I ++ + +R+ G LS S+ + + Sbjct: 20 FFRQLAVILQSGVPLAQGLILIAENMTNENLSQCVQRISSRLSAGEELSLSLRQYPKV-- 77 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + GG L + L ++ +L +R ++ ++ + + S+ Sbjct: 78 ---FEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGALVYPVIVMVLAVSVS 134 Query: 138 FCVSTLVYFTSPGYMNVL 155 + + + + Sbjct: 135 LALLIFIVPRFKAMFDGM 152 >gi|119773598|ref|YP_926338.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B] gi|119766098|gb|ABL98668.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B] Length = 406 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 55/149 (36%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66 R L++ + R+G+P+ A+A + + ++ + G LS Sbjct: 59 RRRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLS 118 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + F +++ V + G L + LS L + + +++ Sbjct: 119 SAMNHHPEVFD----ALFVSMVHV-GENTGKLEDVFLQLSGYLEREQETRRRIK---SAV 170 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ ++ + L P + ++ Sbjct: 171 RYPTFVLIAISLAMVILNIMVIPKFADMF 199 >gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 274 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + K+R F + P +D+ A +P+ D + + VR+ R+ Sbjct: 116 IHFAKKERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAESAQTKEVRNALTRLAAEY 175 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + R + L E + + + + G L E L+ LS L + K Sbjct: 176 VMTREKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-EILSTLSSSLFNTATAKIAR 234 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q +ME K A + V+ +Y Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMY 260 >gi|17547835|ref|NP_521237.1| general secretion pathway protein F [Ralstonia solanacearum GMI1000] gi|17430140|emb|CAD16825.1| probable general secretory pathway f transmembrane protein [Ralstonia solanacearum GMI1000] Length = 403 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+A + Q+ P E + G SLS ++++ R + Sbjct: 73 LASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALAQHPR-----DF 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL L+ L+ + R + +K++ + ++ V Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ + P ++V N + L + ++ Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4] gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4] Length = 248 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR ++ P L+ + + G+PV + + IV ++ + + G+ L Sbjct: 96 KKRLMA-DNELPAILETFISGLSVGMPVENIMRYIVENKKGYMKEIIQEALHKADAGIPL 154 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S S+ + ++ S+ L+E L L R + + + + +A ++ Sbjct: 155 SLSLEEAAEKSLNKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRINEKTAKASVLD 214 Query: 126 AKASAWIIGSLPFCVSTLVYFTSP 149 + ++ + F + +V+ P Sbjct: 215 NVIAIPVL--IGFFIPLIVFVIFP 236 >gi|149376646|ref|ZP_01894405.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] gi|149359019|gb|EDM47484.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] Length = 409 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R LD+ + +AG+P+ + + + P + V + G +++ Sbjct: 61 RKKITLDELIVFCRQMHALTKAGIPLIRTMRGLADTTRSPALSEVLDDVTDRLEAGSTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + P F +I V + G L +A LS IL ++ K +++ Sbjct: 121 TAMQAHPKVFP----DLFIAMIHV-GENTGQLDDAFKRLSEILELERDTKRRLKQ---AM 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ +L + + + P + V Sbjct: 173 RYPTFVVIALFGALMVVNFLVIPKFSAVF 201 >gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 409 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 6/152 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GL + A+A++V Q+ P+ +V +G + S ++ + P Sbjct: 79 LATMIDSGLSLLRALAILVEQTESKPLAKILSQVRNDVEVGTAFSTALGKHPETFP---- 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ ++GG L + L +++ ++AK+++ I + Sbjct: 135 PLMVNMVR-AGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVIAVLAVVGML 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L + G + + ML Sbjct: 194 LFIVPVFAEMFAGLGGELPGPTKFLMFLSGML 225 >gi|238853651|ref|ZP_04644019.1| type II secretory pathway/competence component [Lactobacillus gasseri 202-4] gi|282851508|ref|ZP_06260873.1| type II secretion system F domain protein [Lactobacillus gasseri 224-1] gi|238833689|gb|EEQ25958.1| type II secretory pathway/competence component [Lactobacillus gasseri 202-4] gi|282557476|gb|EFB63073.1| type II secretion system F domain protein [Lactobacillus gasseri 224-1] Length = 326 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S ++ + + G L + + + Sbjct: 14 FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 67 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS+ ++ Q + GNL L LS+++R + K++ A +IG Sbjct: 68 -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 119 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + F + +++LG ++IG + +I Sbjct: 120 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 166 >gi|303241409|ref|ZP_07327912.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302591018|gb|EFL60763.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 295 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 2/152 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++++ + + P + + +S++A V + + + + E I G Sbjct: 142 IVRQKREEIEYELPRFVSNLTQSLKATRDVPAILKSYQKSAGEKFKQEIEVTIADMKSGN 201 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++R+ + +S + + + G N L+ + + K K+ A+ Sbjct: 202 E-ETALTRLESRIGSAMLSDVVRGL-ISVKRGDNGVIYFEMLNHDFKQLEIQKLKLLAMK 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + L + + M L Sbjct: 260 QPGKIKKYSFMMLGCFLLIYLGILGYEIMRAL 291 >gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM 16294] gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 63/158 (39%), Gaps = 4/158 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57 ++ IK R + +D P +D+++ + G +++A+ + + + E + + Sbjct: 119 LQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGESVLGPDLLEESKKFK 178 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + S + + +V ++ + + + G + N ++ L+ + + Sbjct: 179 NEFITYSSDIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIFENQAQELKSMEMLNI 238 Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + +A +M + I LP ++ + + + + Sbjct: 239 EKKAATMNIGITFVMFIFILPAVIAMIAFPMAADALMP 276 >gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum DSM 5476] gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 2/144 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++++R + + P ++ I + +RA V + + + ++ E I G Sbjct: 176 IVQQRREEIEAELPRFVNTIEQELRASRDVLNILKSYQRNAGHAMKRELEITIADMASGN 235 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +++RM + +S + + + G N LS + + K K++A+ Sbjct: 236 E-ENALTRMESRIGSTMLSDVVRGL-ISVKRGDNGIMYFQMLSMTFKQLELQKLKLEAMK 293 Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147 K + L + + Sbjct: 294 QPGKMRKYSFMLLGCFLLMYLGVL 317 >gi|327398636|ref|YP_004339505.1| Type II secretion system F domain-containing protein [Hippea maritima DSM 10411] gi|327181265|gb|AEA33446.1| Type II secretion system F domain protein [Hippea maritima DSM 10411] Length = 401 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GLP+ +++ ++ Q+ + V + G SLS+++S + Sbjct: 70 LASMLSSGLPLDESLNIMAEQAETKKMGEVLYSVKQRVESGASLSQALSDHKDVFSPMYI 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL L LS ++ +K K++ + + + + Sbjct: 130 HMVN-----AGEQTGNLDGVLKRLSEMMEKHITLKRKIKGALIYPTMVTIVAVGVIALIM 184 Query: 142 TLVYFTSPGYMN 153 T V T + Sbjct: 185 TFVIPTFADMYS 196 >gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium SGP1] Length = 382 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 19/151 (12%) Query: 4 LIKKRTAKF--------LDDFPNAL--DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53 +K+R K + AL + +R+G+P+ A+ + S DP + Sbjct: 230 WMKRRGKKIAIPFMRGINEQLTLALVTSHLSTLLRSGIPLVQALRMAS--SMDPRARRWL 287 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 E G ++ E + ++GG LS+AL+N+S R+ Sbjct: 288 DCAEMVKAGHRFDRAL----ERTGFPE---EIVAVVRVGEMGGELSQALSNVSGQCREIA 340 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + + ME + S+ F V ++ Sbjct: 341 QSRMERLSTLMEPMMVLLLGVSVGFIVLAIL 371 >gi|288574999|ref|ZP_06393356.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570740|gb|EFC92297.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 418 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 14/165 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V+AG+ + ++ ++ Q+ + + + RV + G SLS+S+ R + P Sbjct: 85 FFRQLATMVKAGVSLGASLDILSEQTKNKILGNGIVRVKKMVDGGNSLSQSMGRQSVFPP 144 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + S I + GG+L +L ++ + + +K K+ A ++ Sbjct: 145 M------SISIIQAGEEGGSLDVSLERVADFMERQDALKKKI---VSAVTYPAVVMAFSL 195 Query: 138 FCVSTLVYFTSPGYMNVL----INDPRGHMLLGVAAAFMLIGIMV 178 F + L+ P + V I P + +M ++ Sbjct: 196 FVLYLLITVVMPKFATVFSNLNIELPWATRTMFSFGLWMASNWVI 240 >gi|261823000|ref|YP_003261106.1| type IV pilin biogenesis protein [Pectobacterium wasabiae WPP163] gi|261607013|gb|ACX89499.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 401 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 13/154 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ +A+ ++ Q P R R + G SLSE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCILRDIRTHVAQGNSLSEALHD 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 P+ S + G L+ L L ++ ++++Q ++A + Sbjct: 118 YPHIFPVLYRSLIAV---------GELTGKLDVCCLQLAQQQEKQSRLQQKVIKALRYPC 168 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162 +++ ++ P + + N P Sbjct: 169 FVLVIAMLVSMMMLTLVLPEFATLYSSFNTPLPW 202 >gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM 14365] Length = 412 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVI 56 + + K A F +RAG+P+++++ + Q +P + E R + Sbjct: 67 LGRVKKTEVAAFTRQL-------ATLLRAGIPLAESLGALFEQIENPKFQAIVGEVRTAV 119 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G SL++++ + R F +++ +L GNL E L L+ + ++ Sbjct: 120 NE---GSSLADALQKHPRVFD----ELFVSMVR-AGELAGNLDEVLERLAEFMESSAQLR 171 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +KVQ A I+ + + +++ Sbjct: 172 SKVQG----AMIYPVIMIVVGIAIMSILMV 197 >gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-2-3B'a(2-13)] Length = 408 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE-V 81 + AG+ + ++ ++ Q+ +P ++ R + G +LS+SI P + Sbjct: 77 AALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIR------PYPDAF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++GG L E L L+++L D ++ +++ + Sbjct: 131 DGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIK---SAMTYPVVVTILAVLIFL 187 Query: 142 TLVYFTSPGYMNVLINDPRG 161 +V F P + ND G Sbjct: 188 GMVLFILPT-FESIYNDLGG 206 >gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014 str. F0314] gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014 str. F0314] Length = 413 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 8/185 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K KKR + +D + ++AGLP+ A ++ S+P +++ Sbjct: 62 VKSTRKKRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNP---SMTQMLMQVR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + P + F + + GG L L L+ + +K KV+ Sbjct: 117 ADVEQGSALGKSFSKYP-KYFDRFYCNLVSAGETGGVLEGLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178 A + +L F + V + + + G +++ ++ F+ G ++ Sbjct: 176 TALTYPIAIMVVAVALIFVMMMFVLPAFGEVYSSMGAELPGLTQIVMSMSKFFVKYGWVM 235 Query: 179 MRLMI 183 + +I Sbjct: 236 IVAII 240 >gi|253689938|ref|YP_003019128.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756516|gb|ACT14592.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 401 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 13/154 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + + AGLP+ +A+ ++ Q P R R V G SLSE++ Sbjct: 58 REQLGELIKQLAALLHAGLPLLEALKLVSEQHERPGWRCVLRDVRTRVAQGNSLSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 P+ S + G L+ L L ++ ++++Q ++A + Sbjct: 118 YPHIFPVLYHSLIAV---------GELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYPC 168 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162 +++ ++ P + + + P Sbjct: 169 FVLAIAVLVSMMMLTLVLPEFATLYSSFDTPLPW 202 >gi|254424300|ref|ZP_05038018.1| Bacterial type II secretion system protein F domain [Synechococcus sp. PCC 7335] gi|196191789|gb|EDX86753.1| Bacterial type II secretion system protein F domain [Synechococcus sp. PCC 7335] Length = 406 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 64/178 (35%), Gaps = 14/178 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F V +G+ + + ++ Q +P ++ ++ G SLSES+ Sbjct: 70 FSRQF-------AALVSSGVALVRGIGILSDQCPNPKLKIALMQINSDVQQGTSLSESMR 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + ++GG L E L L+++L D ++ ++++ Sbjct: 123 KHPD-----SFDDLYVSMVQAGEVGGVLDEVLNRLAKLLEDLNRLQNQIKSAMAYPVTVG 177 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ ++ ++ + L P +L + + +V+ L+ V Sbjct: 178 FLAVAIFVGLTVFLLPIFAEIFVDLGAELPIFTRVLMGISKLLRTWYLVIGLIGIITV 235 >gi|295837424|ref|ZP_06824357.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826519|gb|EDY42992.2| integral membrane protein [Streptomyces sp. SPB74] Length = 305 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 1/163 (0%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ VRAG ++A+A V + ++ G + ++ R + + Sbjct: 134 LLAGEVRAGNRPAEALAHAVSAC-GELGHGRADILAAARFGGDVPAALRVAAREPGAEGL 192 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + V G L+ L L R L ++ +A ++A A+A+A ++ +LP Sbjct: 193 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLRAQLSGARATAALLAALPLLGL 252 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L +NVL G + L + +A G+ ++ Sbjct: 253 LLGSAVGAAPLNVLFGSVPGFVCLVLGSALEAAGVWWCLWLVR 295 >gi|225874660|ref|YP_002756119.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium capsulatum ATCC 51196] gi|225793983|gb|ACO34073.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium capsulatum ATCC 51196] Length = 398 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F V ++AGLP+ +V ++ +P ++ + V G S+S + Sbjct: 62 FNQQF-------VTLIKAGLPILSSVEMLAQSQKNPHFAAQLQNVAARVRTGESISSAFD 114 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P+ T + + GNL E L R + K+QA + Sbjct: 115 AQGGFPPIY------TTTLLAGERSGNLEEVLTRYLAFQRISLTFRKKLQASLIYPSMLI 168 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ L L+ F P + ++ D G L G+ A + G Sbjct: 169 VLVFGL---FIFLISFVVPRF--AMLYDQMGSKLPGITLALLAFG 208 >gi|312794257|ref|YP_004027180.1| type II secretion system f domain [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181397|gb|ADQ41567.1| Type II secretion system F domain [Caldicellulosiruptor kristjanssonii 177R1B] Length = 264 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 61/154 (39%), Gaps = 2/154 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +K +F D + ++ +++ + GL V + I + V + + Sbjct: 105 LSIRTRKFKKQFKQDLLDTIETMIQGFKCGLVVEQVLEYIAESQENLVTPFIKEINLRLL 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL E+ ++ E + +++S +++E L+ L+ + + + + + Sbjct: 165 AGQSLKEASLQVSSKTLSSEFERMCRIFNLRSVTISHIAETLSVLAENIYEEEKTEIETL 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A + + + +I + + L+ T P M Sbjct: 225 ADKLNVRFT--LIMLAGYVIPFLILVTYPLVMMF 256 >gi|187250990|ref|YP_001875472.1| type II secretion system subunit F [Elusimicrobium minutum Pei191] gi|186971150|gb|ACC98135.1| Type II secretion system subunit [Elusimicrobium minutum Pei191] Length = 412 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 61/158 (38%), Gaps = 9/158 (5%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + + + G+P+ A+ ++ +SDP + +++ + G S ++ + + Sbjct: 72 LAFFAEQLSTLISGGVPLVRAITLLGEHASDPNLGYVLQQIAKDIASGSSFYTALEKHPK 131 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++GG L+ L ++ ++ + +++K+ ++ + + I Sbjct: 132 -----TFDHIWLSLVQAGEVGGQLAGTLMQIAVYIKTQDAVRSKI--ITAVSYPAILFIM 184 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 S+ + +V+ P + + + A + Sbjct: 185 SVGVLIYFIVFIV-PTFATIFAESNMELPAITQAVLLI 221 >gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] Length = 208 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 11/139 (7%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ V VRAGL + A + + + +P + +++V LG+ + M P+ Sbjct: 74 IELFVACVRAGLSIQQATSAVSVVAEEPTVTYWKQVNSLLALGVEPERAWVHMQ---PVP 130 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPF 138 + + ++ + G ++ L LR S AKA A + SLP Sbjct: 131 GLQELARLVMMSEHSGAAIASGCQRLVDTLRAD-------ATSSAIAKAERAGVFISLPL 183 Query: 139 CVSTLVYFTSPGYMNVLIN 157 + L F G + V+I+ Sbjct: 184 ALCFLPAFIILGLVPVVIS 202 >gi|121603665|ref|YP_980994.1| general secretion pathway protein F [Polaromonas naphthalenivorans CJ2] gi|120592634|gb|ABM36073.1| general secretion pathway protein F [Polaromonas naphthalenivorans CJ2] Length = 412 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V +GLP+ A+ + +S + P R + + G + ++++ R E Sbjct: 82 IAGLVTSGLPLERALTALADESENIPQRHLVANLRAEVNGGTPFATALAQHPR-----EF 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GNL L L+ L + +KA++ A A + V Sbjct: 137 SNTYCAVVGAGEHSGNLGMVLERLADDLEQSQELKAQLVG---AALYPAIVTLVAIAIVM 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINF 185 L+ + P V R +L V + G +++ +I Sbjct: 194 FLLGYVVPQVAQVFAGSKRALPVLTVMMLGLAGFVRNQGWLILLTLITI 242 >gi|170768577|ref|ZP_02903030.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627] gi|170122681|gb|EDS91612.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627] Length = 400 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 61/185 (32%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+++A++V Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSESLALLVEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWAEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPVIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFMLIGI 176 V +++F P + + + G +L+ ++ Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIITLADFSSHWGWLLILFGFLLVVANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|153003541|ref|YP_001377866.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152027114|gb|ABS24882.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 419 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ A+ ++ QS +P + V G + ++++ Sbjct: 85 FTRQFSVMID-------AGLPLVQALDILATQSDNPAFKKVLTAVKVRVESGSTFADALG 137 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + F ++ ++GG L L L + + +K +V++ Sbjct: 138 EHPKAFD----DLFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLKRRVKS 183 >gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab] gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab] Length = 408 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE-V 81 + AG+ + ++ ++ Q+ +P ++ R + G +LS+SI P + Sbjct: 77 AALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIR------PYPDAF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++GG L E L L+++L D ++ +++ + Sbjct: 131 DGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIK---SAMTYPVVVTILAVLIFL 187 Query: 142 TLVYFTSPGYMNVLINDPRG 161 +V F P + ND G Sbjct: 188 GMVLFILPT-FESIYNDLGG 206 >gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 576 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 46/105 (43%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L+ + +VR+G+ + A+ V + P+ +++ G ++E + + R Sbjct: 378 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIIKKMAIQMSWGRPVNEVFADLERTE 437 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ + GG++ + L +++ MK ++ A Sbjct: 438 RSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKREISA 482 >gi|284176146|ref|YP_003406423.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511] gi|284017803|gb|ADB63750.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511] Length = 604 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 56/153 (36%), Gaps = 16/153 (10%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLS 66 + D +AL I+ R V G V AV + + + F R +G+ Sbjct: 380 REVEDHLTDALYIVGRQVSDGESVESAVDLAATRVPGETGAVFERAAGLQRRLQIGV--E 437 Query: 67 ESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + +P + ++++ S+ G A+ +++ L + ++A+ + Sbjct: 438 SAFLGPHGALEDVPSPRARGTAALLAIASKEGKPAGRAIVSMADHLEELSEVEAETKRNL 497 Query: 124 MEAKAS--------AWIIGSLPFCVSTLVYFTS 148 + + A ++ + ++ ++ + Sbjct: 498 AKVTGTLDATAAYFAPMVAGVTVGMAAMMASQN 530 >gi|262184094|ref|ZP_06043515.1| hypothetical protein CaurA7_08891 [Corynebacterium aurimucosum ATCC 700975] Length = 248 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 11/166 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I +RAG + A+ D +R+ G S + +++ Sbjct: 86 IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA------- 138 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 EV F+ ++++ + G L+ + L + + A +A+A I+ LP Sbjct: 139 PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACLPL 198 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L+ G +LL V A + G RL++ Sbjct: 199 AGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 244 >gi|4680733|gb|AAD27751.1| XcmS [Pseudomonas putida GB-1] Length = 395 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59 ++ + +R A F + + AGLP+ DA+ + ++ P R ++ Sbjct: 47 LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +ALA R R ++ + Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISY-RQRLDLVRQK 158 Query: 120 QALSM 124 + Sbjct: 159 LVGAS 163 >gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella australiensis 50-1 BON] gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis 50-1 BON] Length = 250 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 57/144 (39%), Gaps = 3/144 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R K ++ P ++++V+ + +PV + + I +R + I+ +LG+ L Sbjct: 97 KQRLMK-DNELPTVVNLLVQGLSVEMPVENILQYIADNKHGAMRDIIKGAIDNINLGIPL 155 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ + + +++ + L+ L ++ + + + + Sbjct: 156 EQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDVLSDMEEERL--NTKLSHVNM 213 Query: 126 AKASAWIIGSLPFCVSTLVYFTSP 149 + + + L + + +V P Sbjct: 214 LDNALFFVVFLGYFLPLIVMILMP 237 >gi|187930467|ref|YP_001900954.1| general secretion pathway protein F [Ralstonia pickettii 12J] gi|187727357|gb|ACD28522.1| general secretion pathway protein F [Ralstonia pickettii 12J] Length = 403 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVLGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ V L+ + P ++V N + L + ++ Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM 6242] gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides burtonii DSM 6242] Length = 306 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 12/178 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSL 65 R K P A++ + AG LPV A+ + + E + ++ LG +L Sbjct: 126 RKRKIEQMLPYAINYMSAMSGAGVLPVDLFRALSNNEIYGEMCVESKYLVRDLEVLGSNL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121 ++ + P + F GG L + R ++ + Sbjct: 186 VSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYIIDNRQKQKEFLETLG 245 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAAAFML 173 L E +A++ G L ++ + G Y+ V P G + V + Sbjct: 246 LLGETYVTAFVAGPLFLIITIAIVSLMGGADQVFLYILVYGLIPVGSAMFLVIITLIT 303 >gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091] gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091] Length = 410 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 79 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 V + + P ++ ++ F+ G MV+ Sbjct: 194 IFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVL 233 >gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801] gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802] gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801] gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802] Length = 404 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ K A F F + AG+ + + ++ Q+S+P ++ + Sbjct: 58 LSNVKVKDKAVFSRQF-------SVMINAGVAIVRCLGILSEQASNPKLKKALGAISAEV 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+SLSE++ + E+ + ++GG L E L LS++L D ++ ++ Sbjct: 111 QQGVSLSEAMGKHPE--CFDELY---VSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ + + F ++ + + D + + + GIM Sbjct: 166 KSAMAYPVTVGVLAVLVFFGMTIFLIPV----FAKIFEDLGAELPMLTQIMLNISGIMRS 221 Query: 180 RLMI 183 ++ Sbjct: 222 WKIL 225 >gi|150399788|ref|YP_001323555.1| hypothetical protein Mevan_1041 [Methanococcus vannielii SB] gi|150399793|ref|YP_001323560.1| hypothetical protein Mevan_1047 [Methanococcus vannielii SB] gi|150399798|ref|YP_001323565.1| hypothetical protein Mevan_1053 [Methanococcus vannielii SB] gi|150012491|gb|ABR54943.1| conserved hypothetical protein [Methanococcus vannielii SB] gi|150012496|gb|ABR54948.1| conserved hypothetical protein [Methanococcus vannielii SB] gi|150012501|gb|ABR54953.1| conserved hypothetical protein [Methanococcus vannielii SB] Length = 198 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66 + KF + P AL ++V S+ +G + +A+ ++ V S F +++ LS Sbjct: 81 KMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLSFE 140 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 +S+ + + + S +I + GG L+ L Sbjct: 141 DSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLN 177 >gi|219856774|ref|YP_002473896.1| hypothetical protein CKR_3431 [Clostridium kluyveri NBRC 12016] gi|219570498|dbj|BAH08482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 298 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 67/178 (37%), Gaps = 4/178 (2%) Query: 9 TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66 + AL I+ + +R+ + AV + + PV F+ + L + Sbjct: 117 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 175 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+I + + + + + +L L + L D + + +++ L E Sbjct: 176 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 234 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + I+ L+Y + + + L++ P G ++L ++AA + + + + Sbjct: 235 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 292 >gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens DSM 2228] Length = 414 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 13/148 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLSLSESI 69 + + N + + AG+P+ ++ +I QS+ ++ E +++ G +LS ++ Sbjct: 75 ISELANFAQRLSVLIAAGIPLVRSLTIIKNQSN--IKHEKEMLTQLLAKVEAGETLSSAL 132 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +Y P F +I + GG L E LA L R+R + +V+ Sbjct: 133 EEQPKYFP----KLFVHLIR-AGETGGVLDEVLAELVDYYRNRDKINKEVK---SALYYP 184 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 I+ V L+ F P +++L Sbjct: 185 ITIVLVAIVAVFILMGFVLPNILDMLTG 212 >gi|320326053|gb|EFW82110.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330218|gb|EFW86203.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880435|gb|EGH14584.1| type II secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 405 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 60/166 (36%), Gaps = 11/166 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L+ P + +V L V +I + +++ F Sbjct: 187 ILLIKVVPQFQSVFAGFGAELPMFTLMVIGLSEVIQQWWIAIVVAF 232 >gi|317123680|ref|YP_004097792.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587768|gb|ADU47065.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 266 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 8/170 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLSESISRMVRY 75 L+ + ++ AGL S AV + + R++ G ++ Sbjct: 81 LEGVAPALEAGLTPSVAVRLSGATLRSSIDPLTARLVAELTETSERGAHVAPVWRSWAGA 140 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +E+ F + + G L++A+ + + +V +A+ ++ Sbjct: 141 EGSEELRFVAAAWQLSEVTGAPLADAVRRAVASVHQARERARRVHVAVAGPRATVVVLTV 200 Query: 136 LPF--CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 LP + L P + + LG+ + +G R ++ Sbjct: 201 LPLTGPLFGLACGVPPTELYLASPLSSAAAALGLVLIW--VGRRWCRRLV 248 >gi|77459395|ref|YP_348902.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] gi|77383398|gb|ABA74911.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] Length = 403 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ V Q+ + V G+ L+E+++ R Sbjct: 69 ATRQLSSLLGASLPLEAALSATVEQAEKKHIAHTLSAVRADVRSGMRLAEALA--ARPRD 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E+ + + G+L++ + L+ + +R N++ K+ L+ + S+ Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNNLRGKI--LTAFIYPGVVGLVSIG 181 Query: 138 FCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + L Y PG ++N G A ++ G + Sbjct: 182 IVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWLCAGVMAGAFWSWRL 239 >gi|312880041|ref|ZP_07739841.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] gi|310783332|gb|EFQ23730.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] Length = 407 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + V AG+ V+ A+ ++ Q + + + F RV + G SL S+ R + P Sbjct: 74 AFRQMSTMVAAGITVAGALNILEDQIQNKALAAAFTRVGKGVAAGFSLGTSLRREAAFSP 133 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L + + GG L +L LS L ++ ++ KV Sbjct: 134 LM------VALIQAGEEGGVLDLSLQRLSDFLEKQEALRRKV 169 >gi|284802133|ref|YP_003413998.1| hypothetical protein LM5578_1888 [Listeria monocytogenes 08-5578] gi|284995275|ref|YP_003417043.1| hypothetical protein LM5923_1840 [Listeria monocytogenes 08-5923] gi|284057695|gb|ADB68636.1| hypothetical protein LM5578_1888 [Listeria monocytogenes 08-5578] gi|284060742|gb|ADB71681.1| hypothetical protein LM5923_1840 [Listeria monocytogenes 08-5923] Length = 309 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 2/153 (1%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + AV + + PV F+ I L + ++ + + + + + Sbjct: 152 ILTAVEENINYLNPPVHHVFQDFIMRIKLVNPDIEAALKALRTKIDNEVFHEWCDALCDC 211 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 Q +L L + L D + + A+++ L E + I+ L+YF + + Sbjct: 212 -QYDRSLKATLTPIVSKLSDMRIVNAELEYLVFEPRKEFIIMAIFVMGNVPLMYFLNKSW 270 Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L++ G ++L + AA + I + + Sbjct: 271 YDTLMHTSMGQIILTITAALIFISTAFVIKLTK 303 >gi|126696027|ref|YP_001090913.1| Type II secretory pathway component PulF-like protein [Prochlorococcus marinus str. MIT 9301] gi|126543070|gb|ABO17312.1| Type II secretory pathway component PulF-like protein [Prochlorococcus marinus str. MIT 9301] Length = 453 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 50/132 (37%), Gaps = 6/132 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R GLP+ +++ +I S + +R F+ + G ++SE + + Sbjct: 121 LSSMIRTGLPLLESLNIIADTSENISIRYSFKEIASGISKGSTMSEMLDKYPEV-----F 175 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L +++L +K ++++ A A + + F + Sbjct: 176 NEMYRALVSAGETAGLLPNTLDRQAKLLESLAKIKGQIKSALAYPSAIAILTVVIVFIMM 235 Query: 142 TLVYFTSPGYMN 153 V + Sbjct: 236 LFVIPIFVDIYD 247 >gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 407 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ + +++++ Q+ +P ++S + V G +LS ++ Sbjct: 70 FCRQFATMID-------AGLPLLNCLSILIDQTYNPKLKSAVQDVYRKVQEGETLSRALG 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P+ + +LGG L E L L+ + KV++ + A Sbjct: 123 NHPQVFPV-----IMVSMVEAGELGGVLDEVLNRLAVHFEKEHKLNEKVKSALV---YPA 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 +I V+ ++ F P +M + Sbjct: 175 VVIAMAALSVTFILTFVFPTFMTLF 199 >gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149] gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149] Length = 288 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 11/144 (7%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64 +F LD++ + A A+ F R+ E+ + S Sbjct: 145 RDEFRQAVCTYLDLVALQLSAAHGPVQALERAAAVCD---GWVFDRIRESLRIAQMQMHS 201 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120 + + + + + E+ ++ G + E L + + LRD+ +A+ Sbjct: 202 PWDELRELADRIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAV 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 ++ S + L F V + Sbjct: 262 TSRLDIPGSLLVFVLLGFAVYPFI 285 >gi|311110460|ref|ZP_07711857.1| competence protein [Lactobacillus gasseri MV-22] gi|311065614|gb|EFQ45954.1| competence protein [Lactobacillus gasseri MV-22] Length = 333 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S ++ + + G L + + + Sbjct: 21 FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 74 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS+ ++ Q + GNL L LS+++R + K++ A +IG Sbjct: 75 -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 126 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + F + +++LG ++IG + +I Sbjct: 127 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 173 >gi|153956470|ref|YP_001397235.1| hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555] gi|146349328|gb|EDK35864.1| Hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555] Length = 309 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 67/178 (37%), Gaps = 4/178 (2%) Query: 9 TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66 + AL I+ + +R+ + AV + + PV F+ + L + Sbjct: 128 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 186 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+I + + + + + +L L + L D + + +++ L E Sbjct: 187 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 245 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + I+ L+Y + + + L++ P G ++L ++AA + + + + Sbjct: 246 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 303 >gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810] Length = 361 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 5/164 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 ++ + + +G + A A + D E R + G + S +R + Sbjct: 46 VEQLATVISSGAGLRQAWAALGRSLPD---GELRDLARAAASGADPRRAASARLRRTEM- 101 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ ST ++V + G + L +L+ LRD + + +++A I+ LP Sbjct: 102 -IASLSTALAVCERTGAPTAGMLQHLADALRDLHDAAQARRTAFAGPRSTARILLILPLA 160 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L + +L+ G++L A +G MR ++ Sbjct: 161 GLGLGMLLGGDPLRLLLTSGAGNLLALTGLALTALGWWWMRRLV 204 >gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 275 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 ++ + K R KF + P +D+ A +P+ D + + S VR+ ++ Sbjct: 117 IQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQSAKSKEVRNAITKLAAEY 176 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + ++ + + L E + + + + G + L+ LS L + K Sbjct: 177 IMTREKEVALRKFANEVSLPEANVLAMALLQGDRTG-RTVDILSTLSSSLFNTAASKVAR 235 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145 Q SME K + I + V+ +Y Sbjct: 236 QDKSMEYKVLSAIFFLMASIVTLYIY 261 >gi|116629903|ref|YP_815075.1| Type II secretory pathway/competence component [Lactobacillus gasseri ATCC 33323] gi|116095485|gb|ABJ60637.1| Type II secretory pathway/competence component [Lactobacillus gasseri ATCC 33323] Length = 339 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S ++ + + G L + + + Sbjct: 27 FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 80 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS+ ++ Q + GNL L LS+++R + K++ A +IG Sbjct: 81 -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 132 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + F + +++LG ++IG + +I Sbjct: 133 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 179 >gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1] gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1] Length = 349 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 51/146 (34%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + PN + +G+ + A+ ++ + R++ G+ E Sbjct: 129 RVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSEGEYGALTPHIRKLDTEMSWGVPFVE 188 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I R + + +I+ S GG++SE L + + N+K + + M Sbjct: 189 AIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERKNGMMIYM 248 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153 + + V ++ T M Sbjct: 249 IIILMSFFVFLFVIGVLSGTFLTTMA 274 >gi|315106265|gb|EFT78241.1| conserved domain protein [Propionibacterium acnes HL030PA1] Length = 115 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + + G L+ A +++ R ++A + + A+AS I+G LP + Sbjct: 7 LAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPLVGLLM 66 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + L G L + +G++ Sbjct: 67 GHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 101 >gi|315501227|ref|YP_004080114.1| type ii secretion system f domain protein [Micromonospora sp. L5] gi|315407846|gb|ADU05963.1| Type II secretion system F domain protein [Micromonospora sp. L5] Length = 242 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 7/114 (6%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 V +V + P+ RV T LG S E+ + + + S Sbjct: 121 VDRSVLAVAEALGGPLADRLGRVGRTLRLGGSPGEAWAHLE---GVTGAEPVVAAAVRSS 177 Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 G L+ AL L+ LR ++ A+ + +A I+ L C Sbjct: 178 NSGAALARALTRLADDLRAERSTSAE----AAARRAGVLIVLPLGLCFLPAFIL 227 >gi|302864942|ref|YP_003833579.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302567801|gb|ADL44003.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] Length = 242 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 7/114 (6%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 V +V + P+ RV T LG S E+ + + + + S Sbjct: 121 VDRSVLAVAEALGGPLADRLGRVGRTLRLGGSPGEAWAHLE---GVTGAEPVAAAAVRSS 177 Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 G L+ AL L+ LR ++ A+ + +A I+ L C Sbjct: 178 NSGAALARALTRLADDLRAERSTSAE----AAARRAGVLIVLPLGLCFLPAFIL 227 >gi|323702226|ref|ZP_08113892.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans DSM 574] gi|323532716|gb|EGB22589.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans DSM 574] Length = 269 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 35 DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94 A + + +P + E ++ + E++ R++ V + + V Sbjct: 144 AAFKLSLEFIPEPFKGELSTALDRISRKAEVDEAMDRLIDRARHPLVDAICSRLKVSWDH 203 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 +LS +++ M A + AK++ + + ++ + L + P Y + Sbjct: 204 RFE-PTIFDDLSDQIKEINEMAAAKATV---AKSATYAVLAIIGLIGALFIYGFPAYKVL 259 Query: 155 L 155 + Sbjct: 260 M 260 >gi|241664635|ref|YP_002982995.1| general secretion pathway protein F [Ralstonia pickettii 12D] gi|240866662|gb|ACS64323.1| general secretion pathway protein F [Ralstonia pickettii 12D] Length = 403 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ V L+ + P ++V N + L + ++ Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|320328776|gb|EFW84775.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] gi|330881976|gb|EGH16125.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] Length = 403 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ V Q+ + + G+ L+E+++ R ++ Sbjct: 73 LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L+ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|227832052|ref|YP_002833759.1| hypothetical protein cauri_0222 [Corynebacterium aurimucosum ATCC 700975] gi|227453068|gb|ACP31821.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length = 249 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 11/166 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 I +RAG + A+ D +R+ G S + +++ Sbjct: 87 IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA------- 139 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 EV F+ ++++ + G L+ + L + + A +A+A I+ LP Sbjct: 140 PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACLPL 199 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + L+ G +LL V A + G RL++ Sbjct: 200 AGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 245 >gi|170728734|ref|YP_001762760.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169814081|gb|ACA88665.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 406 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS +++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNHHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLMAITLAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|257092074|ref|YP_003165715.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044598|gb|ACV33786.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 410 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 21/176 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG + +A+ S+ P + S R + G S S +++R Sbjct: 81 MQLMLRAGHTILEALEAAGRLSARPRLSSLLDRCAQRISAGSSFSAALAR-----ESSTF 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAWIIGSLPFCV 140 + ++ + G L L+ + R +++ ++ L+ A + IG + F V Sbjct: 136 PRLAVKLAEAGEASGELDAVFERLAVLTEKRADVRRQMMTALTYPAIVTLVSIGVISFLV 195 Query: 141 STLVYFTS----------PGYMNVLIN--DPRGHM--LLGVAAAFMLIGIMVMRLM 182 ++V + P ++ D G L +A +++G + +R + Sbjct: 196 GSVVPRFAVFLQARGKAVPWAARTMMEMADWLGRWGFTLVMALLGLVVGFIALRRL 251 >gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4] gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 194 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 LD++ +RAGLPVS A+ + + P+ RV + LG + S Sbjct: 55 LDLLGACLRAGLPVSAAITAMASTAPKPMADTLSRVADLLTLGADPDAAWSEAA 108 >gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei 6A8] gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8] Length = 224 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 13/179 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHL-GLSL 65 R P A++ I AG+ ++ ++ E R + + G L Sbjct: 43 RRRNIDATLPYAINYITSMSTAGITPAEIFRLLGDSPIYGESSVEARYIARELDIFGRDL 102 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121 +++ + P + F GGNL+E + R + + A Sbjct: 103 IDALRIVSSSTPSLRMKEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTLA 162 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG-------YMNVLINDPRGHMLLGVAAAFML 173 L E+ +A + G+L + + G Y+ + + P G M+ + + M Sbjct: 163 LISESYVTAMVAGTLFLIILQSIMSVLGGDSKPIFLYVVIYLMIPFGTMMFIIMISSMT 221 >gi|309780544|ref|ZP_07675291.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA] gi|308920699|gb|EFP66349.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA] Length = 403 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ +A+A + Q+ V + G SL Sbjct: 59 KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + + + GNL L+ L+ + R + +K++ Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ V L+ + P ++V N + L + ++ Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|294791162|ref|ZP_06756319.1| conserved hypothetical protein [Scardovia inopinata F0304] gi|294457633|gb|EFG25987.1| conserved hypothetical protein [Scardovia inopinata F0304] Length = 234 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 13/175 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSES 68 ++ + + +V +R G + A + G + + R+++ + Sbjct: 61 LEENMSDIIAELVSLIRNGSSLISACEEVGGCGFAVPEITEARLRQMLLQRSSSHPKE-- 118 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 V+ + Q S + + LG + L + + + ++ + ++ + Sbjct: 119 ----VKRISQQ----LSAACHLSTALGCGAASCLEAVEAEHKRNQGIEDRRRSALAVPRM 170 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + ++ LP + S VL P G + L +AA G+M +R +I Sbjct: 171 TLRVLLVLPILILLAGQMASSHTFTVLFTKPVGWICLLIAALLYGAGLMWIRSLI 225 >gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090] gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945] gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02] gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18] gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140] gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19] gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11] gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18] gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1] gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1] gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332] gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679] gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035] gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291] gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2] gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02] gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19] gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11] gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18] gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1] gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332] gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679] gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035] gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2] gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62] gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae] gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090] gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945] gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291] gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02] gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19] gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11] gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18] gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1] gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332] gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679] gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035] gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2] gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62] gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107] Length = 410 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 79 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 V + + P ++ ++ F+ G MV+ Sbjct: 194 IFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVL 233 >gi|302387444|ref|YP_003823266.1| hypothetical protein Closa_3110 [Clostridium saccharolyticum WM1] gi|302198072|gb|ADL05643.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 309 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 4/168 (2%) Query: 9 TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66 + AL I+ + +R+ + AV + + PV F+ + L + Sbjct: 128 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 186 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+I + + + + + +L L + L D + + +++ L E Sbjct: 187 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 245 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + I+ L+Y + + + L++ P G ++L ++AA + I Sbjct: 246 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFI 293 >gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 295 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 5/135 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + ++ GL V A+ V+ + + E R V++ GL+L + + R + Sbjct: 154 IPLLRILFETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLALGPELEKSARLL 213 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + E+ ++ G ++L L +L DR+ + + M AK SA ++ L Sbjct: 214 AVDELIDTCVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAVMMVFL 273 Query: 137 PFCVSTLVYFTSPGY 151 + L+ PG+ Sbjct: 274 --FPALLIVLAGPGF 286 >gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 189 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 LD++ +RAGLPVS A+ + + P+ RRV + LG + S Sbjct: 50 LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALGADPDAAWSEAA 103 >gi|226349291|ref|YP_002776405.1| hypothetical membrane protein [Rhodococcus opacus B4] gi|226245206|dbj|BAH55553.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 291 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + S++AG + + I + +R E I + ++I+R + Sbjct: 109 LSSSMKAGSGIEHTI--ISTPIPEALREEITAFISRLRNNVPPVDAITRFASDLNDSVGD 166 Query: 83 FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137 + + Q G L+ L L+ + D R+ +A ++ +AK I + Sbjct: 167 KICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWVTIIAITTL 226 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 F P ++L + + M+ Sbjct: 227 AAAFLFTNFMEP------YKSGGMQIVLLILLTLFAADLYWMKQ 264 >gi|89098959|ref|ZP_01171839.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911] gi|89086363|gb|EAR65484.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911] Length = 401 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 21/184 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L DF L +RAG+ V DA ++ Q+ ++ V + G SLS++ ++ Sbjct: 61 LQDFVIYLRQFATLLRAGVTVVDATGILSQQTESKALKKALAAVEQDLREGNSLSDAAAK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S F +I + GGN+ + L L+ + K K+ + A Sbjct: 121 HKKVF----TSMFVNMIK-AGEAGGNMDDTLERLAVHYEKQHFTKQKIISALAYPIAVGI 175 Query: 132 IIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRG----HMLLGVAAAFMLIGI 176 I ++ + V T P ++N L+ + + IG+ Sbjct: 176 IAVAVVIFLLVSVVPTFVEMFQDFGGELPAITQFVLNSSEFMQKYWWLVILMFVSVFIGV 235 Query: 177 MVMR 180 V+R Sbjct: 236 SVIR 239 >gi|149374906|ref|ZP_01892679.1| general secretion pathway protein F [Marinobacter algicola DG893] gi|149360795|gb|EDM49246.1| general secretion pathway protein F [Marinobacter algicola DG893] Length = 403 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 11/168 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A++ QSS P +RS + G SL++S+ R P Sbjct: 73 LATLIQSGIPIEQALSAAAQQSSKPRIRSMLIAIRAKVMEGYSLADSLGEFPRAFP---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + ++ + G+L L L+ R+ + K+Q ++ + + ++ + Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTEARQEARQKIQLAAIYPIILSVVAIAIVVFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINFDV 187 T V P + V + + L A A +G + L+I V Sbjct: 188 TYVV---PDIIEVFVKQGQELPALTAAMLAVSDFLGDYGIYLLILIVV 232 >gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM 2661] gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286 gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 595 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 46/105 (43%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L+ + +VR+G+ + A+ V + P+ +++ G ++E + + R Sbjct: 397 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAIQMSWGRPVNEVFADLERTE 456 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ + GG++ + L +++ MK ++ A Sbjct: 457 KSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISA 501 >gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685] gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685] Length = 410 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ ++P +E I G +LS + SR +Y Sbjct: 79 LATMMKAGLPLMQAFEIVARGHANPSMTEMLMEIRSEVEQGTTLSRAFSRYPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + ++GG L L L+ ++++ KV+ + + L F + Sbjct: 134 DRFYCNLVSAGEMGGVLESLLDKLAVYKEKTQSIRKKVKTALTYPISVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 V + + + ++ ++ F+ G +++ Sbjct: 194 IFVLPAFKEVYSNMGAELPALTQAVMDISEFFVAYGWIIL 233 >gi|330989444|gb|EGH87547.1| general secretion pathway protein GspF [Pseudomonas syringae pv. lachrymans str. M301315] Length = 403 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + +A+ V Q+ + + G+ L+E+++ R ++ Sbjct: 73 LASLLSAGLSLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L+ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|294139061|ref|YP_003555039.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12] gi|293325530|dbj|BAJ00261.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12] Length = 406 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + +R + E G LS +++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTAGRPLSSAMNHHQDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 ALFVSMVHV-GENTGKLEDAFMQLSGYIEREQETRRRIK---AAMRYPIFVLIAITIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + ++ Sbjct: 185 ILNIMVIPKFADMF 198 >gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5] gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC 27029] gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5] Length = 287 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 11/144 (7%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64 +F LD++ + A ++ F R+ E L S Sbjct: 144 RDEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAVCD---GWVFDRIREALRLAQLQMHS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120 + + + + + E+ ++ G + E L + + LRD+ +A+ Sbjct: 201 PWDELQELAERIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGV 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 ++ S + L F V + Sbjct: 261 TSKLDIPGSLLVFVLLGFAVYPFL 284 >gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 329 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 53/144 (36%), Gaps = 7/144 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R + PN + +G+ + A+ ++ + R++ + Sbjct: 107 LEGRRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLDQRISWNF 166 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++I ++ + +P+ V +++ S GG++ E L + A+ + Sbjct: 167 AFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKD-------SAEYVVMK 219 Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147 + K + +I + + F Sbjct: 220 TDRKNNMFIYVIIILASFAVFLFV 243 >gi|86742017|ref|YP_482417.1| hypothetical protein Francci3_3331 [Frankia sp. CcI3] gi|86568879|gb|ABD12688.1| hypothetical protein Francci3_3331 [Frankia sp. CcI3] Length = 301 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 3/159 (1%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + AG P+ AV + R+ L +++ + V + Sbjct: 133 LDAGQPLKAAVVASCQLPPSALAGPLGRLRVRLDQ-EPLPAALAGFRAEVNHPLVGSIAA 191 Query: 87 VISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 V+S+ + G G+L+ +A R R + + A + S ++ L V Sbjct: 192 VLSLTYRRGAGDLARLMAEQVESTRHRVAVLRDLHAARARYRRSMVLLLGLFAVSVVGVL 251 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 P + G +L + A + + + + + Sbjct: 252 AVWPAMLAP-YRTAWGQAVLIMIAGVVGLAVRTLLRLAR 289 >gi|213691074|ref|YP_002321660.1| hypothetical protein Blon_0153 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522535|gb|ACJ51282.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 217 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L+ + + +LG + L + R + M+ KA+ ++ +LP Sbjct: 107 LEAARGVTAAAVLSDELGCQVVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 166 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L G + LI PRG + L + G+ MR ++ Sbjct: 167 AVTVALGELLGAGPLAFLIGSPRGVVCLTLGGCCYAAGLAWMRALLK 213 >gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 463 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 14/198 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KKR + F L + +R GL +V + + R Sbjct: 142 LQKMAKKRKEEL---FTEFLFKLSEMMRGGLDPIKSVNELAKAEIGVLTPHIRIAANRMA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S ++ M R + ++ ++ ++ S GG +S+ + S +R +++ + + Sbjct: 199 YGDSFERAMKAMARSTGSELIARYTELVIEASYSGGGVSDLILKCSDDMRSILSIERQKE 258 Query: 121 ALSMEAKASAWIIGSLPFCVS------TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + + + L YFT G + L ++ +M +++ Sbjct: 259 GDLKQFVLIFYFAQIIIIFICYTLTNDLLPYFTDLGSTSFLGDNEIANMDFSTGFFHLIL 318 Query: 175 -----GIMVMRLMINFDV 187 G +++ + DV Sbjct: 319 INSFFGGLIIGKISEGDV 336 >gi|163751010|ref|ZP_02158242.1| MSHA biogenesis protein MshG [Shewanella benthica KT99] gi|161329300|gb|EDQ00298.1| MSHA biogenesis protein MshG [Shewanella benthica KT99] Length = 406 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + ++ +R + E G LS +++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTNSQRMRDALDDISEQLTAGRPLSSAMNHHQDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F +++ V + G L +A L+ + + + +++ + +++ ++ + Sbjct: 129 ALFVSMVHV-GENTGKLEDAFMQLAGYIEREQETRRRIK---AAMRYPTFVLIAITIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + ++ Sbjct: 185 ILNIMVIPKFADMF 198 >gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1] gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 196 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 31/137 (22%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------------SLSES 68 D++ +RAGLPV+ A + + P+ RR + LG +ES Sbjct: 58 DLLAACLRAGLPVATAAQAVSRTAPAPLSESLRRAADLLSLGADAATAWEAAASDPATES 117 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 ++RM R + G +L+ ++ L+ ++ + A + +A Sbjct: 118 LARMARR---------------SAASGSSLAGSMTELAAD----GRIQVEHLAAAAAERA 158 Query: 129 SAWIIGSLPFCVSTLVY 145 I G L C Sbjct: 159 GVLISGPLGLCFLPAFI 175 >gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456] gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456] Length = 621 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 4/146 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 I ++ K P + R GL ++ V+ + + + RR+ +G Sbjct: 383 MRIARKEKKINRSLPAFFRDLSEVRRTGLSPERSIIVLSERDYGELSNVIRRIAAALSMG 442 Query: 63 LSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L + + ++ + F I V + +S ++ +N+K + Sbjct: 443 LHVERAFRTAIKGYKSWILRVTMRFLVDAIDVGGGSPTTIDSLARFVSTLIELNENLKRR 502 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144 ++ + A I+ ++ Sbjct: 503 LKPFIIMPYFGAVIVAVASILTLAML 528 >gi|288918386|ref|ZP_06412739.1| type II secretion system protein [Frankia sp. EUN1f] gi|288350281|gb|EFC84505.1| type II secretion system protein [Frankia sp. EUN1f] Length = 492 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%) Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R++ + +T V G L+ L+ R ++ A ++S Sbjct: 147 RLLSRCDAGALRQLATAFRVCRLTGVRLAPVAVMLADAARSDAARADELAAALAGPRSSG 206 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP + ++VL P G + L + L G+ +R + + Sbjct: 207 RLVAGLPLLGVAMGILLGAAPVDVLTTSPVGTLCLAAGVSLDLAGLRWLRRISD 260 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +RAG A+ V+ + P E R + G E+ R+ Sbjct: 303 VSACLRAGATTQHALEVVGSATGGPAGVELRATGRSMRHGAPADEACRRL 352 >gi|330890301|gb|EGH22962.1| general secretion pathway protein GspF [Pseudomonas syringae pv. mori str. 301020] Length = 403 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ V Q+ + + G+ L+E+++ R ++ Sbjct: 73 LASLLSAGLPLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L+ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|110667162|ref|YP_656973.1| hypothetical protein HQ1189A [Haloquadratum walsbyi DSM 16790] gi|109624909|emb|CAJ51319.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790] Length = 611 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGL 63 ++K+ A +A +I R V AG V ++ + + F+ L + Sbjct: 361 VRKQVADIESGLADATAVIGRRVGAGEAVETSLTAAADATIGETSTVFKTAAGVQHRLRV 420 Query: 64 SLSESIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MK 116 + ++ + +P + +I V ++ G E L L+ LR + + Sbjct: 421 DIQQAFLGPYGALSDVPSDRARATAVLIGVAAREGRPAGETLQTLADHLRTVQQTESAAR 480 Query: 117 AKVQALSMEAKASAWIIGSL 136 ++ +++ +A + G L Sbjct: 481 RELASITGTLSHTAALFGPL 500 >gi|213970187|ref|ZP_03398318.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato T1] gi|301385925|ref|ZP_07234343.1| type II secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302063132|ref|ZP_07254673.1| type II secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302134158|ref|ZP_07260148.1| type II secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925068|gb|EEB58632.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato T1] Length = 405 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 61/166 (36%), Gaps = 11/166 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +RS + + G S + ++ + + Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRSLVNSLKQEVSAGNSFATALRQKPEHFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L+ P + +V L V + +I + +++ F Sbjct: 187 ILLIKVVPQFQSVFAGFGAELPMFTLMVISLSEVIQQWWIAIVVAF 232 >gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 287 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 3/136 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 + +FP LD+++ + +G+ + I + V ++ G+ + Sbjct: 135 IMAEFPFLLDLMLMMLESGVSLDQCFRSIARDEAIAVPHHARLIAMLVADLERGMRYDLA 194 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R + + + + G L+ AL R R+ M+A+ + + Sbjct: 195 LDRWAARVAVSGARELAALFRQALFQGVELAPALREFVREFTQRRVMRAREAMGGITVRM 254 Query: 129 SAWIIGSLPFCVSTLV 144 +I + ++ Sbjct: 255 VVLMILFFMPALFVVL 270 >gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus sp. SR1/5] Length = 151 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIETQHLGLS 64 L D+P + V+AGL A I E R G+S Sbjct: 1 MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123 +E+ R + ST++ Q G L++ L S + + KA+V + Sbjct: 61 EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120 Query: 124 MEAK 127 K Sbjct: 121 AATK 124 >gi|111026114|ref|YP_708397.1| hypothetical protein RHA1_ro10046 [Rhodococcus jostii RHA1] gi|110824957|gb|ABH00239.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 291 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + S++AG + + I + +R E I + ++I+R + Sbjct: 109 LSSSMKAGSGIEHTI--ISTPIPEALREEITAFISRLRNNVPPVDAITRFASDLNDSVGD 166 Query: 83 FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137 + + Q G L+ L L+ + D R+ +A ++ +AK I + Sbjct: 167 KICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWVTIIAITTL 226 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 F P ++L + + M+ Sbjct: 227 AAAFLFTNFMEP------YKSGGMQIVLLILLTLFAADLYWMKQ 264 >gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M6190] gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis ES14902] Length = 410 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 79 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177 V + G M+L +A F + G + Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244 >gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58] gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18] gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442] gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491] gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14] gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58] gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18] gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491] gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442] gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14] gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153] gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275] gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013] gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710] gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76] gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE 2594] gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis N1568] gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M13399] gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M0579] gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis CU385] gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240013] gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis H44/76] gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240149] gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis NZ-05/33] Length = 410 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 79 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177 V + G M+L +A F + G + Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244 >gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis 961-5945] Length = 402 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 71 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 126 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 185 Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177 V + G M+L +A F + G + Sbjct: 186 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 236 >gi|325964626|ref|YP_004242532.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans Sphe3] gi|323470713|gb|ADX74398.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans Sphe3] Length = 265 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 6/127 (4%) Query: 62 GLSLSESISR-MVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G +SE++ R + P ++ + + G L++ L + L + Sbjct: 129 GTPVSEAMRRALPSAFPRRDRECRIWAELAACFDIAEASGCPLADVLTRFAAQLEVEDDA 188 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A Q KA+ ++ LP L +++L+ P G L + G Sbjct: 189 DAARQTALAGPKATVSLLTWLPLMGLGLGIALGVDPLSILLGTPWGLAALAAGFGLTVAG 248 Query: 176 IMVMRLM 182 + + Sbjct: 249 RLWSARL 255 >gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae pv. mori str. 301020] Length = 401 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 11/173 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR + D + + AG P+ A+A+ QS P + S ++E G SL Sbjct: 56 KRKKISDAEVARFTDQLAILLEAGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++ + S F + + G L E L+ L+ L + M+ L Sbjct: 116 SVAMG-----AEHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMR---SDLISA 167 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A+++ + + L+ + P ++ + + L+ M +GI + Sbjct: 168 LIYPAFLVCGVFGSLVLLLTYVVPQFVPIFRDLNVPLPLITECI--MALGIFL 218 >gi|260771242|ref|ZP_05880169.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972] gi|260613839|gb|EEX39031.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972] Length = 408 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S +V + G +S+++ Sbjct: 77 LSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAM-----RTASPHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL+E L+ + ++AKV + + + + + Sbjct: 132 DALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVMLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|256397693|ref|YP_003119257.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256363919|gb|ACU77416.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 283 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 1/138 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMP 77 LD+ V ++ AG V A+ P R ++ L + + + + + Sbjct: 146 FLDVTVNALAAGTGVEQALGGASEIGDSPAFERLRHALDVAFLSRLPIHQVFAELGTTLG 205 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ + + + G + +LA + +R + + +A + + + I + Sbjct: 206 LAEITDLAASLQLAGAEGAKIRTSLAAKAEAIRAKILADEEAEAAATTERMTVPIALLMT 265 Query: 138 FCVSTLVYFTSPGYMNVL 155 + + Y ++ L Sbjct: 266 GFLVLIGYPAMASALSAL 283 >gi|315179152|gb|ADT86066.1| type IV pilin biogenesis protein PilC [Vibrio furnissii NCTC 11218] Length = 408 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S +V + G +S+++ Sbjct: 77 LSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAM-----RTASPHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL+E L+ + ++AKV + + + + + Sbjct: 132 DALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVMLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|257485210|ref|ZP_05639251.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010891|gb|EGH90947.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 403 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ V Q+ + + G+ L+E+++ R ++ Sbjct: 73 LASLLSAGLPLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L+ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|182413437|ref|YP_001818503.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177840651|gb|ACB74903.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 417 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61 L ++R P L+ + +G+ +AV ++ + +P +R+ + E Sbjct: 66 RLERRRNVARAQRLP-FLESLHDLTTSGMSAGEAVRLLSTRIKEPALRALCSALWERLSE 124 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS ++S V+ + + G+L+E L L L +++ ++ ++ Sbjct: 125 GAPLSRAMSDFPAVFDAATVN-----LIQAGEATGSLNETLDRLITHLNEQRELRRQL 177 >gi|75992384|dbj|BAE45050.1| putative integral membrane protein [Terrabacter sp. DBF63] Length = 300 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 66/154 (42%), Gaps = 14/154 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSE--FRRVIE 57 ++ K+R +F + L ++ R G V A++ + E F R+ E Sbjct: 147 VRDQAKERREEFAFATISYLRLVAIR-RLGHEGVVSAMSGAAR-----ISDEWMFTRIRE 200 Query: 58 TQH----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 T + +++ + + + E+ + + + + GG+++++L + + +RDR Sbjct: 201 TLQRAQWSNVPPWDALDELADDLQVPELHEIADITRL-TSSGGSITDSLMSRAASMRDRL 259 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 K +V+A SA + + +++L++ Sbjct: 260 LSKEQVRASDATTSLSAPLAVLIMLFMASLLFPM 293 >gi|227113971|ref|ZP_03827627.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 401 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + ++ + ++AGLP+ +A+ ++ Q P R R V G SLSE++ Sbjct: 58 REQLGESIKQLAALLQAGLPLLEALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALQE 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 P+ S + G L+ L L ++ ++++Q ++A + Sbjct: 118 YPHIFPVLYRSLIAV---------GELTGKLDACCLQLAQQQEKQSRLQQKVIKALRYPC 168 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162 +++ ++ P + + + P Sbjct: 169 FVLAIAMLVSMMMLTLVLPEFATLYSSFDTPLPW 202 >gi|317121506|ref|YP_004101509.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315591486|gb|ADU50782.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 408 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP+S + +V Q +R ++ G L E+++ Sbjct: 72 FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHAR----- 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + ++L G L E LA L+ R ++ K+++ A+++ Sbjct: 127 GAFNDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKIRSALA---YPAFVLLVAAA 183 Query: 139 CVSTLVYFTSPGYMNVL 155 V+ +V F P ++ + Sbjct: 184 VVAVMVTFIVPTFVGIF 200 >gi|114045980|ref|YP_736530.1| type II secretion system protein [Shewanella sp. MR-7] gi|113887422|gb|ABI41473.1| type II secretion system protein [Shewanella sp. MR-7] Length = 406 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis OX99.30304] gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis G2136] gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M01-240355] gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein [Neisseria meningitidis M04-240196] Length = 402 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 71 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 126 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 185 Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177 V + G M+L +A F + G + Sbjct: 186 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 236 >gi|118580924|ref|YP_902174.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503634|gb|ABL00117.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 405 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 63/186 (33%), Gaps = 32/186 (17%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D +GLP+ + ++ Q + + +V E+ G + +++++ Sbjct: 70 FTRQFATMID-------SGLPLVQCLEILSSQQENKTFKEILYKVKESVESGSTFADALA 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + F + ++GG L L L+ + +K +++ Sbjct: 123 KHPKAFD----QLFVN-LVAAGEVGGILDTILQRLAAYIEKAMKLKKQIKG---AMVYPL 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLG---------VAAAFMLIG 175 I+ V ++ F P + D G +++ + ++ G Sbjct: 175 TIMSIAVIVVGVILIFVIPT-FAKMFQDFGGDLPAPTKIVIALSNFLTRYIIVIIALIYG 233 Query: 176 IMVMRL 181 + + Sbjct: 234 LFWVFK 239 >gi|261415454|ref|YP_003249137.1| Type II secretion system F domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371910|gb|ACX74655.1| Type II secretion system F domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326068|gb|ADL25269.1| pilus assembly protein PilC [Fibrobacter succinogenes subsp. succinogenes S85] Length = 400 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 75/178 (42%), Gaps = 20/178 (11%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + AGLP+ + ++ Q +P +++ ++ ++ + G SL++++++ + Sbjct: 68 MFSSMCSAGLPMLQCLNILEAQCENPELKNVVHKLTQSINGGSSLADALAQHPKVFDSLY 127 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + GG L LA L+ L + + +K KV+ + + + Sbjct: 128 CNMVA-----AGEAGGILEGILARLAETLENNQRLKRKVKKALTYPIMVIIVGIVVVIAL 182 Query: 141 STLVYFTSPGYMNVL---INDPRGHMLLGVA------AAFMLIGIMVM----RLMINF 185 T V T L + P +++ ++ AFM IG++++ ++++ Sbjct: 183 MTFVVPTFAEQFAALDAELPAPT-QVVMNISDFIRNNGAFMFIGVIIIIFAYKMIMRI 239 >gi|291279501|ref|YP_003496336.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans SSM1] gi|290754203|dbj|BAI80580.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans SSM1] Length = 402 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + AGLP+ A+ +I Q+ R F + E G S S ++ + Sbjct: 65 ATRQLATMINAGLPIVRALDIISAQTPKKKFRKIFLEIKEDIEQGQSFSRALEKHKNIFG 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + GG L + L LS+ + ++K KV++ M + + Sbjct: 125 DLYINMVA-----AGEAGGLLDDILDRLSQYMEKAISLKRKVKSAMMYPSIVLIVAVLVV 179 Query: 138 FCVSTLVYFTSPGYMNVL 155 + + + Sbjct: 180 WGLMVFIIPKFKEMYEGF 197 >gi|253701603|ref|YP_003022792.1| type II secretion system protein [Geobacter sp. M21] gi|251776453|gb|ACT19034.1| type II secretion system protein [Geobacter sp. M21] Length = 401 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++ ++AGLP+ A+ I+ + + E GL+LS + + R P Sbjct: 72 LLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGLALSAAFEKFPRVFP----H 127 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + + G+L + + L+ + + K+ + +I +S Sbjct: 128 LYIASVR-AGERTGDLPQTIRRYIAFLKRTEGFRGKIIGALI---YPVILIAVAAVAISL 183 Query: 143 LVYFTSPGY 151 L+ + P + Sbjct: 184 LLIYVVPTF 192 >gi|46200147|ref|YP_005814.1| general secretion pathway protein F [Thermus thermophilus HB27] gi|46197775|gb|AAS82187.1| general secretion pathway protein F [Thermus thermophilus HB27] Length = 396 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 9/110 (8%) Query: 16 FPNALDII---VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71 P + + V AG+PV+ A+ + +S +P+ E R V E G +L++++ Sbjct: 55 LPELVLFMEEFATLVGAGVPVAQALHTLSLESRNPLLKEAARGVRERVEGGEALAQAMEH 114 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 P + +++GG L L + L +++ KV+ Sbjct: 115 YPEVFPP-----LVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRT 159 >gi|148264721|ref|YP_001231427.1| type II secretion system protein [Geobacter uraniireducens Rf4] gi|146398221|gb|ABQ26854.1| type II secretion system protein [Geobacter uraniireducens Rf4] Length = 405 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D +GLP+ + ++ GQ + + +V E+ G + ++++S Sbjct: 70 FTRQFATMID-------SGLPLVQCLDILAGQQENKTFKDILVKVKESVESGSTFADALS 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + V+ + + GG L L L+ + +K +V+ A Sbjct: 123 KHPKAFDQLYVNLVA-----AGEAGGILDTILNRLAAYIEKAMKLKKQVKG---AMVYPA 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 I+ V ++ F P + D G Sbjct: 175 TIMSIAVIVVGVILVFVIPT-FAKMFADFGG 204 >gi|56459482|ref|YP_154763.1| Type II secretory pathway [Idiomarina loihiensis L2TR] gi|56178492|gb|AAV81214.1| Type II secretory pathway [Idiomarina loihiensis L2TR] Length = 412 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ A+ + + + +R + V E G +LS ++S P Sbjct: 76 FCRQMYSLTQAGIPMLRAIEGLADTTQNKRLRKTLQDVHEQLERGRNLSSAMSHHRGVFP 135 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 I + G L E+ LS L ++ + +++ + ++++ +L Sbjct: 136 R-----LVIAIVHVGENTGQLEESFQQLSVYLEKEQDTRKRIK---AATRYPSFVLIALV 187 Query: 138 FCVSTLVYFTSPGYMNVL 155 + L F P + ++ Sbjct: 188 IAMFVLNIFVIPTFASMF 205 >gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 405 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 11/185 (5%) Query: 1 MKHLIKKRTAKFLD-----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRR 54 M IKKR + D + ++AG+P+ A ++ + +P V Sbjct: 48 MSTKIKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLND 107 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G SLS + + Y + + G L + L L+ + + Sbjct: 108 IRTDVETGTSLSVAFRKFPLY-----FDNLYCNLIEAGESAGILDQLLDRLAVYMEKTEA 162 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K+K+++ M + + + + V + D L+ +A + + + Sbjct: 163 IKSKIKSALMYPISVLIVAFVVTAVIMIFVVPAFKEVFSNFGADLPAPTLVVIAISEIFV 222 Query: 175 GIMVM 179 + Sbjct: 223 KYWWL 227 >gi|120600397|ref|YP_964971.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|146291671|ref|YP_001182095.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|120560490|gb|ABM26417.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|145563361|gb|ABP74296.1| type II secretion system protein [Shewanella putrefaciens CN-32] Length = 406 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPEVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAITIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|119719687|ref|YP_920182.1| type II secretion system protein [Thermofilum pendens Hrk 5] gi|119524807|gb|ABL78179.1| type II secretion system protein [Thermofilum pendens Hrk 5] Length = 284 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 4/145 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQH-LGLSL 65 R D P + +G+ + + ++ +S+ ++ E ++ GL Sbjct: 99 RRITIEKDLPFTASYMAALSSSGMGLERLLERAVLYESNKEIKREIALILRDIKAYGLDT 158 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALS 123 ++SR P + ++ + GN L++ S +L ++++ +S Sbjct: 159 LTALSRAALRSPSRSLAMLWLGLRETYITSGNFKSYLSHFSGVLLSEKTQSLRRVTNTIS 218 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148 M A+ ++ + P T++ Sbjct: 219 MMAEVYTTLMVAAPLMFVTMLVIMD 243 >gi|315227312|ref|ZP_07869099.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|315119762|gb|EFT82895.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 209 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 10/140 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--- 68 F L++++ S+ G + ++ + +PV F+ V E + G S +++ Sbjct: 61 FPAQL--VLEMLIVSISNGASIPRSLEAVGTVMKNPVGKAFKEVAEALYRGSSWADAWEL 118 Query: 69 -ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G + L L + + + + + +K Sbjct: 119 GRRGIGDERGREVFDVVDRALEPSWRHGLS---PLNRLETTIEEANRQQNR-RLDDAVSK 174 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 S I+ L C Sbjct: 175 LSVKILLPLGLCFLPAFIVV 194 >gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797] gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797] Length = 368 Score = 45.1 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 8 RTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 R K + + D ++ +RAG+P+ + + + ++ G SL Sbjct: 8 RMPKISIASLVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLALKIEEGSSLE 67 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+I +P +S + I + G L EAL+ + R R ++ ++ + Sbjct: 68 EAIQLGADKLPPSYISLLKSAIRM-----GKLPEALSAYTSFARSRMELRQEIGMALL-- 120 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ F + P + + Sbjct: 121 -YPGIVLVMAFFLSLFACFIIFPKLLVI 147 >gi|227822842|ref|YP_002826814.1| general secretion pathway protein F, GspF [Sinorhizobium fredii NGR234] gi|227341843|gb|ACP26061.1| general secretion pathway protein F, GspF [Sinorhizobium fredii NGR234] Length = 404 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 10/144 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG + A+ +V R E ++ G S S + + M P Sbjct: 78 LEAGFTIDAALKTVVDDREMAAGREELSNLVAAVMAGGSFSSAFAHMQNAPPE------V 131 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 T + + + G L + +A+L++ D+K +A+ + A+++ + F + +++ Sbjct: 132 TALLLSGEQAGRLEQVVASLAQSFEDQKARRAEAIETLL---YPAFLLAVMLFSIGVIMF 188 Query: 146 FTSPGYMNVLINDPRGHMLLGVAA 169 P V +L Sbjct: 189 VLVPAIEPVFEGAEHARPMLISVL 212 >gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 576 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 46/105 (43%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P L+ + +VR+G+ + A+ V + P+ +++ G ++E + + + Sbjct: 378 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAVQMSWGRPINEVFADLEKTE 437 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++++ + GG++ + L +++ MK ++ + Sbjct: 438 KSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKKEISS 482 >gi|120612796|ref|YP_972474.1| type II secretion system protein [Acidovorax citrulli AAC00-1] gi|120591260|gb|ABM34700.1| type II secretion system protein [Acidovorax citrulli AAC00-1] Length = 427 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 71/178 (39%), Gaps = 25/178 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ S P + + + V++ G LS ++++ Sbjct: 97 LSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFG---- 152 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ +I + G +S L L + ++ ++ V + ++ A ++G + Sbjct: 153 DFYINMIR-SGEASGQMSAVLERLVAHMERQRALRDSVISATI---YPAILLGVAVLSLI 208 Query: 142 TLVYFTSPGY----------------MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ F P + M + + L + A + +G++V R + Sbjct: 209 AMLGFVVPQFEKLFTDMGDALPLPTQMVMALGHAFTRYGLLIGIAALGLGLLVRRWVT 266 >gi|319424901|gb|ADV52975.1| MSHA biogenesis protein, MshG [Shewanella putrefaciens 200] Length = 406 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPEVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + ++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPILVLIAITIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|302387180|ref|YP_003823002.1| hypothetical protein Closa_2838 [Clostridium saccharolyticum WM1] gi|302197808|gb|ADL05379.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 309 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 3/150 (2%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + AV + + PV S F+ + + + + M + + + Sbjct: 152 ILTAVDENIDYLNPPVLSVFKGFLYRIKMIDPDIVTGLEEMRIQIENAVFQEWCDAMITC 211 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 Q NL L + L D + + +++ + E + + L L+YF + + Sbjct: 212 -QFDRNLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFITMQLLVVGNIPLLYFLNKDW 270 Query: 152 MNVLINDPRGHMLLGVAAAFMLI-GIMVMR 180 + L+ P+G ++L + A + I G V++ Sbjct: 271 YHALMYTPQGQIILTICFAAIFISGAFVIK 300 >gi|91228621|ref|ZP_01262538.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01] gi|91187804|gb|EAS74119.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01] Length = 407 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58 + H +K R F I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKARDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +S+++ + T + + GNL+E L+ + ++AK Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147 V A I ++ V+ V F Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188 >gi|311031469|ref|ZP_07709559.1| type II secretion system protein [Bacillus sp. m3-13] Length = 402 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 21/185 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L DF L +RAG+ V +A V+ Q+S ++ V E G LSE+ ++ Sbjct: 61 LRDFVIFLRQFSTLIRAGISVVEATNVLAQQTSSKALKRVLFDVEEEMKQGNPLSEAAAK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + F +I + G L + L L+ + + K+ + Sbjct: 121 HPKVFSS----MFINMIK-AGEASGALDDTLDRLATQFEKQNETRQKIVSALTYPLVLGV 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMN------------VLINDPR---GHMLLGVAAAFMLIGI 176 I + + V T + VL L + +IG+ Sbjct: 176 IAIGVVIFLLVGVVPTFVAMFSDFGADLPLITRFVLWASEWMQSFWWLFLLIVLAAVIGL 235 Query: 177 MVMRL 181 + M Sbjct: 236 VAMNK 240 >gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 416 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ + AG + A+ + D ++ V LG S + + Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVAQLGVVARLLLLGASWQRAWANAPARY--- 337 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 +F ++ Q G ++ L RD + + A + S+ I+ + C Sbjct: 338 --AFLGEALADGWQRGSSVIPTLIAT----RDAWIAQEQADAHQRAQRLSSMIVVPVGVC 391 Query: 140 VSTLVYFT 147 Sbjct: 392 YLPAFVLV 399 >gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806] gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 404 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 6/133 (4%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + AG+P+ + V+ QSS+P +R + + G LS+++++ + Sbjct: 74 SVMINAGVPIMRCLGVLGDQSSNPKMRKALQAISTDVQQGSPLSQAMAK-----HTECFD 128 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + GG L E L LS++L D +K ++++ A + + F ++ Sbjct: 129 ELYVSMIEAGETGGVLDEVLLRLSKLLEDMARLKNQIKSAMTYPVAVGILAIIVFFGMTI 188 Query: 143 LVYFTSPGYMNVL 155 + L Sbjct: 189 FLIPVFAKIFTDL 201 >gi|329900877|ref|ZP_08272626.1| General secretion pathway protein F / Type II secretory pathway, component PulF [Oxalobacteraceae bacterium IMCC9480] gi|327549350|gb|EGF33921.1| General secretion pathway protein F / Type II secretory pathway, component PulF [Oxalobacteraceae bacterium IMCC9480] Length = 406 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + A LP+ A + ++ Q+ +R + G SLS+++S R + Sbjct: 76 LASLLEASLPLEQAFSALLEQAERTYLRDLIASIRSEVMGGSSLSDALSHHPR-----DF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L++ L+ L+ + R + KV+ + ++ + Sbjct: 131 ADIYRALVASGEQIGQLAKVLSRLADYIERRNALVQKVKLAFTYPAIVTVVAFAIVIFLL 190 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 T V P ++V N + LL V Sbjct: 191 TYVV---PQIVSVFANTKQKLPLLTVLML 216 >gi|172058131|ref|YP_001814591.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] gi|171990652|gb|ACB61574.1| type II secretion system protein [Exiguobacterium sibiricum 255-15] Length = 395 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 6/174 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 ++ VR+G+ + A ++ Q+ P+ V + G+ S++I + Sbjct: 53 IEHLVMYARQFATLVRSGVSIVKATEILRKQTDSKPLERALVEVEDDLRSGIQFSQAIEK 112 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R F +++ + GNL EAL N+ L+ + +K KV + + + Sbjct: 113 HPRV-----FDTFFVSMAMAGEASGNLEEALDNIVTQLQKQYEIKRKVISALIYPAVVSI 167 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + V T + L ++ + VA + + + L+I F Sbjct: 168 VAIGVVVFLMLNVVPTFASIFDQLGSELPLITKIVVAVSDFFVAYWWVLLLIAF 221 >gi|24375595|ref|NP_719638.1| MSHA biogenesis protein MshG [Shewanella oneidensis MR-1] gi|24350490|gb|AAN57082.1|AE015842_2 MSHA biogenesis protein MshG [Shewanella oneidensis MR-1] Length = 406 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIGLAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|313679424|ref|YP_004057163.1| type II secretion system f domain [Oceanithermus profundus DSM 14977] gi|313152139|gb|ADR35990.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] Length = 399 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++ + AG+ + A+ + QS P +R ++V G L+E++ P Sbjct: 62 FMEQFATLIGAGVSLVQALHTLSLQSPHPTLRHAAQQVRSRVEGGAGLAEAMGEFPEAFP 121 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 V + +L G+L E L ++R L D ++ K+++ Sbjct: 122 PIVVRMVAAA-----ELSGSLEETLRRVARYLDDAFELQQKIRS 160 >gi|187930139|ref|YP_001900626.1| type II secretion system protein [Ralstonia pickettii 12J] gi|309783039|ref|ZP_07677758.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA] gi|187727029|gb|ACD28194.1| type II secretion system protein [Ralstonia pickettii 12J] gi|308918147|gb|EFP63825.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA] Length = 424 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ ++ +I ++P + Sbjct: 72 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 131 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 132 ESGSSMAQAFRRHPKY-----FDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 186 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + + + + V + G + D L +A + + + Sbjct: 187 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 245 >gi|331018826|gb|EGH98882.1| type II secretion system protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 405 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIGEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G A M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217 >gi|258544197|ref|ZP_05704431.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC 15826] gi|258520573|gb|EEV89432.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC 15826] Length = 405 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +RAG+PV A+ ++ P+ R + E G +L+E++ + + Sbjct: 74 MATMLRAGMPVLRALDLVGESIEKPLAMREMVFDLYERIQNGATLAEAMR--AHPLQFDD 131 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + T + + G L + N++ L + K KV+ A ++ Sbjct: 132 LY---TSLIAAGEDAGMLESTMDNIALNLEKGEATKKKVKKALT---YPAIVMVFAIIVT 185 Query: 141 STLVYFTSPGYMNVLIND 158 + L+ P + +++ Sbjct: 186 AILLINVVPVFAQFFLSN 203 >gi|254491934|ref|ZP_05105113.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxidans DMS010] gi|224463412|gb|EEF79682.1| Bacterial type II secretion system protein F domain [Methylophaga thiooxydans DMS010] Length = 402 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+++ + + Q S P + +++ G SLS ++ + P Sbjct: 76 MAFMLRAGLPLAECLQLAATQVSSPRLHLALKKMHRDIEAGQSLSSALGKHPDVFP---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + V + G L + L+ L + ++ ++ Sbjct: 132 -DITINLVVAGESTGELDLIMERLAVHLEKKSQLRKQM 168 >gi|71734826|ref|YP_273101.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555379|gb|AAZ34590.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 405 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRIASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G A M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPAFTLMVIGL 217 >gi|50122722|ref|YP_051889.1| type IV pilin biogenesis protein [Pectobacterium atrosepticum SCRI1043] gi|49613248|emb|CAG76699.1| protein transport protein [Pectobacterium atrosepticum SCRI1043] Length = 401 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 11/141 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + ++AGLP+ DA+ ++ Q P R R V G SLSE++ Sbjct: 58 REQLGELIKQLAALLQAGLPLLDALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALLY 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 P+ F V G L+ L L ++ ++++Q ++A + Sbjct: 118 YPHIFPVL-YRSFIAV--------GELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYPC 168 Query: 131 WIIGSLPFCVSTLVYFTSPGY 151 +++ ++ P + Sbjct: 169 FVLTIAIVVSMMMLILVLPEF 189 >gi|159039935|ref|YP_001539188.1| hypothetical protein Sare_4420 [Salinispora arenicola CNS-205] gi|157918770|gb|ABW00198.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length = 330 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 38/178 (21%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + LD + + +RAGLPV A + P E G +L + Sbjct: 186 RRRHLDQLCD----LAADLRAGLPVGQA-------APLPAGGE---------PGSTLLRA 225 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + G L+E L + R A A + A+A Sbjct: 226 ------------------AVRLADRTGAPLAELLDRIDADARAADRGLAAAAAQAAGARA 267 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +AW++ +LP L + + VL++ G L +A + G+ + Sbjct: 268 TAWLLAALPLGGIGLGFGIGVDPVAVLLHSTAGVACLLLAVVLQVAGLFWAERLTAIR 325 >gi|260893568|ref|YP_003239665.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865709|gb|ACX52815.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 409 Score = 44.7 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + AG+P+ ++ V+ Q+ + ++ V G SL+E+ +P +S Sbjct: 74 ATLLEAGVPLLTSLRVLERQTKNRQLKKCLAEVAAEVQKGRSLAEAFGHHREILPEIFLS 133 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L +AL L+ + ++ K++ + A + + Sbjct: 134 MVAVG-----ETSGTLDKALGRLAAYFERQADLTDKLKTATSYPLLVAGVALVTAIALLV 188 Query: 143 LVYFTSPGYMNVL 155 L+ + Sbjct: 189 LIVPIFADIFRQM 201 >gi|149198877|ref|ZP_01875919.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa HTCC2155] gi|149138075|gb|EDM26486.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa HTCC2155] Length = 414 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AGLP+ A+ + Q+ +R ++ ++ G S++++ + Sbjct: 82 LATLLGAGLPMVRAIRTLAKQAKKDVILRQILTQIADSIEGGNGFSDALASQPK-----S 136 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + + G + L L+ + + +K KV+ M + +I + + + Sbjct: 137 FNKLYVNMIRAGEASGAMEAVLNRLAEFMEKSEKLKRKVKGALMYPCSVLFIAVCITWGL 196 Query: 141 STLVYFTSPGYMNVLI 156 T + + L+ Sbjct: 197 MTFIVPKFKEIFDDLL 212 >gi|113869209|ref|YP_727698.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16] gi|113527985|emb|CAJ94330.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16] Length = 423 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 +K R K D + ++AG+P+ ++ +I +P + Sbjct: 70 LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S++ + R +Y + + GG L L LS + +K + Sbjct: 130 IEAGSSMAAAFRRHPKY-----FDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 +++ + A + ++ + V G + + LL +A Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAI 235 >gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM 43017] gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM 43017] Length = 212 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 4/140 (2%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D++ + AGLPV AV+ + ++ PV R LG S + + E Sbjct: 76 DLLGACLIAGLPVPTAVSTVADVATGPVAEVLRSTGNALALGASAESAWQHARNHPDTAE 135 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139 + + + G L+ L+ +R+ + + +A + + + LP Sbjct: 136 L---ARAACRTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLCFLPAF 192 Query: 140 VSTLVYFTSPGYMNVLINDP 159 + V G + L P Sbjct: 193 LCLGVIPVVLGLADHLTVTP 212 >gi|87309424|ref|ZP_01091559.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM 3645] gi|87287732|gb|EAQ79631.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM 3645] Length = 397 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 21 DIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + V G+ +S A+ + + ++ +++ + + G S ++ + ++ Sbjct: 66 NQLAVMVDTGINLSTAIESVSSQEKNEALKTLLVDIRRSVESGEDFSAALGKYPKH---- 121 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + + S+ G L E L ++ +R+ ++ KV+A A ++ Sbjct: 122 -FNKTYISLVKASEQTGMLGEMLERIAAYMRNEVEIRNKVRAALA---YPAVMVVLATAV 177 Query: 140 VSTLVYFTSPGY 151 L+ + P + Sbjct: 178 TIFLLTYVLPKF 189 >gi|86146570|ref|ZP_01064892.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222] gi|218708201|ref|YP_002415822.1| type II secretory pathway subunit EpsF [Vibrio splendidus LGP32] gi|85835627|gb|EAQ53763.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222] gi|218321220|emb|CAV17170.1| Type II secretory pathway, component EpsF [Vibrio splendidus LGP32] Length = 406 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 17/169 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V++G+P+ + + + QS P +R+ V G SL++S+S Sbjct: 75 ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLSDYPHIFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132 F +++ + G+L L L+ +R+ M++K V + S + Sbjct: 131 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAVTIVSFLL 189 Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +P V ++ P L+ G+ ++IG++V+ Sbjct: 190 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLLLIIGVIVL 238 >gi|207739025|ref|YP_002257418.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] gi|206592396|emb|CAQ59302.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] Length = 407 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 63 IKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 120 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 121 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 172 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 173 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 224 >gi|194290795|ref|YP_002006702.1| type IV pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193224630|emb|CAQ70641.1| type IV pilus ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 423 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 +K R K D + ++AG+P+ ++ +I +P + Sbjct: 70 LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S++ + R +Y + + GG L L LS + +K + Sbjct: 130 IEAGSSMAAAFRRHPKY-----FDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 +++ + A + ++ + V G + + LL +A Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAI 235 >gi|197117666|ref|YP_002138093.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem] gi|197087026|gb|ACH38297.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem] Length = 401 Score = 44.7 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 8/129 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++ ++AGLP+ A+ I+ + + E G++LS + + R P Sbjct: 72 LLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGMALSAAFEKFPRVFP----H 127 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + + G+L + + L+ + + KV + A ++ VS Sbjct: 128 LYIASVR-AGERTGDLPQTIRRYIAFLKRTEGFRGKVIGALI---YPAILVTVAAVAVSL 183 Query: 143 LVYFTSPGY 151 L+ + P + Sbjct: 184 LLIYVVPTF 192 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 11/134 (8%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73 + + +G+P+ +A+ + VG ++ V + G LS ++ M Sbjct: 266 ALAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGM- 324 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + MP + + + G+L E L+++S + ++ + L+ I+ Sbjct: 325 KLMPPLALRMLTVG-----ETTGSLEEMLSDISDYFEE--EIERDLHVLTTS--IEPAIM 375 Query: 134 GSLPFCVSTLVYFT 147 ++ + ++ Sbjct: 376 VAMGVVIGVIIVTM 389 >gi|308235609|ref|ZP_07666346.1| hypothetical protein GvagA14_05194 [Gardnerella vaginalis ATCC 14018] Length = 212 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 79 QEVSFFSTVIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +++ + + + S +G ++++ + +S K + + KA+ ++ Sbjct: 89 KDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVNDLSSEVFAMPKATIRLLT 148 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +LPF + ++ RG+ LLG+ F +IG++ + ++ Sbjct: 149 ALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGLLWVTWIMK 198 >gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum SK141] gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum SK141] Length = 198 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ + AGL V A + + + + V +G+ + M + L+ Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKSHAGLE 123 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + ++ + Q G ++ + LR A+ A + A + +LP Sbjct: 124 DL---AQLVIMSGQSGATIAAGCQRICTSLR------AEASAHATAQAERAGVFIALPLA 174 Query: 140 VSTLVYFT 147 V L F Sbjct: 175 VCFLPAFI 182 >gi|311113937|ref|YP_003985158.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC 14019] gi|310945431|gb|ADP38135.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC 14019] Length = 222 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 79 QEVSFFSTVIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +++ + + + S +G ++++ + +S K + + KA+ ++ Sbjct: 99 KDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVNDLSSEVFAMPKATIRLLT 158 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +LPF + ++ RG+ LLG+ F +IG++ + ++ Sbjct: 159 ALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGLLWVTWIMK 208 >gi|320457130|dbj|BAJ67751.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 165 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 39/107 (36%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L+ + + +LG + L + R + M+ KA+ ++ +LP Sbjct: 55 LEAARGVTAAAVLSDELGCQVVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 114 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L G + LI PRG + L + G+ MR ++ Sbjct: 115 AVTVALGELLGAGPLAFLIGSPRGVVCLTLGGCCYAAGLAWMRALLK 161 >gi|241763429|ref|ZP_04761483.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241367371|gb|EER61692.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 416 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 13/146 (8%) Query: 17 PNALDI---IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 P+ L I + +RAGL + +A+ V++ S P V + + +++ G LS ++S Sbjct: 77 PDVLAITSELAIMLRAGLALDNALRVLIDMSHKPSVAALMQGILDAVKGGTPLSRALSHH 136 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F+ ++ + G +S L L + ++ ++ V + ++ A + Sbjct: 137 RELFG----DFYINMVR-SGEASGQMSAVLDRLVEHMERQRALRDSVISATI---YPAIL 188 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND 158 + + ++ F P L D Sbjct: 189 LAVAVLSLIAMLGFVVPQ-FEKLFTD 213 >gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328] gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328] Length = 377 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 6/126 (4%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+ ++ ++V+ Q + ++ + G LS S+ + F ++ Sbjct: 50 AGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSSSMRKFPDVFD----QLFVSM 105 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 +S + GG L E L L+ ++ ++++++ + K +I ++ F ++T + T Sbjct: 106 VS-AGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFIAIAVFFGMATFLLPT 164 Query: 148 SPGYMN 153 G Sbjct: 165 FSGIFE 170 >gi|241664289|ref|YP_002982649.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240866316|gb|ACS63977.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 420 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 7/179 (3%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ ++ +I ++P + Sbjct: 68 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 127 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 128 ESGSSMAQAFRRHPKY-----FDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 182 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + + + + + V + G + D L +A + + + Sbjct: 183 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 241 >gi|117922092|ref|YP_871284.1| type II secretion system protein [Shewanella sp. ANA-3] gi|117614424|gb|ABK49878.1| type II secretion system protein [Shewanella sp. ANA-3] Length = 406 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|212717043|ref|ZP_03325171.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM 16992] gi|212660031|gb|EEB20606.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM 16992] Length = 175 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 12/142 (8%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ + ++ + R E + G+S ++ Sbjct: 43 LPLILEMLSVAIRQGSSIPRALIAVGDIAAGEFGAGLRSAGEQLNEGVSWDDAWPD---- 98 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +++ + G + E L L + + Q AK S ++ Sbjct: 99 --DGDLAVVRDAFASSWHSGASPVERLETAVEQL----DWDERAQIEQAAAKLSVRLL-- 150 Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157 LP + L F + G + +++ Sbjct: 151 LPTGLCFLPAFVAVGIIPSVMS 172 >gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205] gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205] Length = 288 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRY 75 LD++ + A ++ F R+ E+ L S + + + Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCD---GWVFDRIRESLRLAQLQMHSPWDELRDLADR 212 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQALSMEAKASAW 131 + + E+ ++ G + E L + + LRD+ +A+ ++ + Sbjct: 213 IGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGALL 272 Query: 132 IIGSLPFCVSTLV 144 + L F V Sbjct: 273 VFVLLGFGTYPFV 285 >gi|71734185|ref|YP_274397.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554738|gb|AAZ33949.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 403 Score = 44.3 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ V Q+ + + G+ L+E+++ R ++ Sbjct: 73 LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA--ARPRDFPDI 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L+ + L+ + +R ++ K+ + + ++ + Sbjct: 131 Y---RALIGAGEESGGLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + V + D G L +AA Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215 >gi|113971812|ref|YP_735605.1| type II secretion system protein [Shewanella sp. MR-4] gi|113886496|gb|ABI40548.1| type II secretion system protein [Shewanella sp. MR-4] Length = 406 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|83745828|ref|ZP_00942885.1| GspF-related protein [Ralstonia solanacearum UW551] gi|83727518|gb|EAP74639.1| GspF-related protein [Ralstonia solanacearum UW551] Length = 445 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 101 IKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 158 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 159 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 210 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 211 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 262 >gi|148976511|ref|ZP_01813207.1| type II secretory pathway, component EpsF [Vibrionales bacterium SWAT-3] gi|145964087|gb|EDK29344.1| type II secretory pathway, component EpsF [Vibrionales bacterium SWAT-3] Length = 407 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 17/169 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V++G+P+ + + + QS P +R+ V G SL++S++ Sbjct: 76 ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLADYPHIFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132 F +++ + G+L L L+ +R+ M++K V + S + Sbjct: 132 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAVTIVSFLL 190 Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +P V ++ P L+ G+ ++IG++V+ Sbjct: 191 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQDWGIQLLLLIIGVIVL 239 >gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system proteins TadC) [Natronomonas pharaonis DSM 2160] Length = 615 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 13/187 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIV-GQSSDPVRSEFRRVIET 58 ++ + R P A+ + R++ G + + + + +E RRV+ Sbjct: 120 LRWRVDARRTAIERTLPGAVRYL-RALADGSEGRREMLRRVAKQDAYGETSAELRRVLRK 178 Query: 59 QHLGLSLSESISRMVRYMPLQEVSF-FSTVISVQSQLGGN-LSEALANLSRIL---RDRK 113 L SL + + R P +E+ F + G + L L SR+L R R+ Sbjct: 179 AELTGSLDSGLRSVARETPSRELLSPFLLKFREHANQGSDALQGYLRMESRMLSHQRSRE 238 Query: 114 NMKA-KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGV--A 168 +A L E ++ +L + T++ +PG + +P LL A Sbjct: 239 RQRAGDYLELLAELFIVLLVLPALLVIIVTVMSVLAPGLSRPVPIPGEPTMRALLVYGSA 298 Query: 169 AAFMLIG 175 A +++G Sbjct: 299 AFVLVVG 305 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 11/149 (7%) Query: 8 RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ--- 59 R A+ + + + + V G P +AV + + P++++ + Sbjct: 386 RRARLDDAKDREIRDFVHAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLT 445 Query: 60 ---HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + E++ R V + +++ +G + L + + + Sbjct: 446 TGTRDGGTRREALDRFVERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQR 505 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY 145 K+++ A W L + V Sbjct: 506 KKLRSAMAVYVAVGWTTALLVVGIVVAVN 534 >gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC 39073] gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC 39073] Length = 402 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AGLP+ A+ V+ Q +P +R +++ G + ++ R Sbjct: 62 RRDLALFCRQLATMLGAGLPIMSALRVLQRQVENPSLRESIGVLLQDLESGEAFYRALGR 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASA 130 R P + +LGG L E L L+ L ++ KV++ L+ A S Sbjct: 122 QPRVYP----PIVIHTVE-AGELGGALDETLERLAGHLEREHEVEEKVKSALTYPAVVSL 176 Query: 131 WIIGSLPFCVSTLV 144 +G++ F ++ ++ Sbjct: 177 VAVGAVIFLLTYVL 190 >gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] Length = 401 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 72/195 (36%), Gaps = 19/195 (9%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61 L KR K + + ++AG+ + ++ +I + + ++ ++ + Sbjct: 50 LKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIRQ 108 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ LSE++ R P+ + ++ GNL + ++ + KV+ Sbjct: 109 GIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---------AAFM 172 + + ++ + + + + + +++ P ++L + Sbjct: 164 AMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMVSLPLPTVILLGLSGGIRKYWPFILL 223 Query: 173 LIGIMV--MRLMINF 185 ++ ++ +RL++ Sbjct: 224 ILAAVIFGIRLILRI 238 >gi|299537656|ref|ZP_07050947.1| hypothetical protein BFZC1_16629 [Lysinibacillus fusiformis ZC1] gi|298726908|gb|EFI67492.1| hypothetical protein BFZC1_16629 [Lysinibacillus fusiformis ZC1] Length = 235 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 3/144 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 FP L + + + V + V + + DP+ E ++I+ G + + Y Sbjct: 86 FPQFLQSFIALLPSSGNVYQTLKVALKYTPDPLDKELIKLIQKIENGNDRN-AYLEFADY 144 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + E +I S+ G L + L++ K + ++ K + I Sbjct: 145 IGSSEAYMVMNMIYQFSEQGVEKESIQELERYIQNLQENKVDELIQHKMNASDKFGLFPI 204 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157 F V YM + + Sbjct: 205 LISLFLVGGFAGVIFLHYMTNVTD 228 >gi|294787153|ref|ZP_06752406.1| putative bacterial type II secretion system protein F domain protein [Parascardovia denticolens F0305] gi|294484509|gb|EFG32144.1| putative bacterial type II secretion system protein F domain protein [Parascardovia denticolens F0305] Length = 177 Score = 44.3 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 10/140 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--- 68 F L++++ S+ G + ++ + +PV F+ V E + G S +++ Sbjct: 29 FPAQL--VLEMLIVSISNGASIPRSLEAVGTVMKNPVGKAFKEVAEALYRGSSWADAWEL 86 Query: 69 -ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + + + + G + L L + + + + + +K Sbjct: 87 GRRGIGDERGREVFDVVDRALEPSWRHGLS---PLNRLETTIEEANRQQNR-RLDDAVSK 142 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 S I+ L C Sbjct: 143 LSVKILLPLGLCFLPAFIVV 162 >gi|149174204|ref|ZP_01852832.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM 8797] gi|148847184|gb|EDL61519.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM 8797] Length = 420 Score = 44.3 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%) Query: 29 AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ ++ ++ P+++ VIE G +LSE+ M + Sbjct: 96 AGLPILRSLRILEAQAKPGPLKASLDGVIEDIESGNTLSEA---MAKQPKC--FDNLYVN 150 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + GG L L L+ +++K KVQ +I V ++Y+ Sbjct: 151 MVKAGEAGGALEVILQRLAEFKERAQSLKKKVQG---AMIYPVAVITVAGLIVGFIMYWI 207 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLI 174 P + + ++ G L G+ M I Sbjct: 208 IPKFKKIFLD--FGTELPGITLLLMSI 232 >gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 263 Score = 44.3 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 18/59 (30%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 P A D++ + AG A + PV R LG + R+ Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGGPVGEALARGAAEVRLGGEPDAAWQRLA 178 >gi|167033520|ref|YP_001668751.1| type II secretion system protein [Pseudomonas putida GB-1] gi|166860008|gb|ABY98415.1| type II secretion system protein [Pseudomonas putida GB-1] Length = 396 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59 ++ + +R A F + + AGLP+ DA+ + ++ P R ++ Sbjct: 47 LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +ALA R R ++ + Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISY-RQRLDLVRQK 158 Query: 120 QALSM 124 + Sbjct: 159 LVGAS 163 >gi|330987706|gb|EGH85809.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 405 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G A M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPAFTLMVIGL 217 >gi|322688313|ref|YP_004208047.1| hypothetical protein BLIF_0122 [Bifidobacterium longum subsp. infantis 157F] gi|320459649|dbj|BAJ70269.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 230 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L+ + + +LG L + R + M+ KA+ ++ +LP Sbjct: 120 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 179 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L+ PRG + L + G+ MR ++ Sbjct: 180 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 226 >gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1] gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1] Length = 438 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A+ V+V S P + + ++++ G S+++ R Sbjct: 108 LAVMLRAGLPLDRALKVMVSMSQRPSITALLDDLLDSVKSGKGFSQALQPHQRLFG---- 163 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ ++ + GG L E L+ L+ L + ++ V A ++ V Sbjct: 164 EFYINMVR-SGEAGGQLGEVLSRLAEHLERTRALRESV---VSALIYPAILVLVAAVSVF 219 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F P L ND Sbjct: 220 LMLAFVVPQ-FESLFND 235 >gi|325109102|ref|YP_004270170.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969370|gb|ADY60148.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 416 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 29 AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ ++ ++ QS P+++ VIE G +LSE+++R + + + + Sbjct: 92 AGLPILRSLRILESQSKPGPLKNSLIGVIEDVESGNTLSEAMTRQPKAFD----NLYCNM 147 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + GG L L L+ +++K KVQ ++ V ++YF Sbjct: 148 VK-AGEAGGALEVILQRLAEFKEKSQSLKRKVQG---AMIYPVSVLTVAGGIVGFIMYFI 203 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 P + + + G L V A + + +V+ Sbjct: 204 IPKFKEIFMG--FGIELPAVTVALITVSDLVV 233 >gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing bacterium SS3/4] Length = 346 Score = 43.9 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 13/178 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--- 61 +KKR + V +GL + + + ++ +D EF Sbjct: 1 MKKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQDDTD---REFCLACRKLGAFMT 57 Query: 62 -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ +++ P + + +++ G L A L+ + K++ Sbjct: 58 EGKTVGDAMEETG-RFPEP-----AIQMIRAAEMSGQLVRTTARLAVHYEKEHRTEGKIR 111 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + K ++ L V + T + + +L+G++ + Sbjct: 112 SAVLYPKILVLMMIFLMLFVFLEILPTLEPLLVDVTLPLLTRILMGISHFLYAYRYFL 169 >gi|325521658|gb|EGD00426.1| general secretion pathway protein F [Burkholderia sp. TJI49] Length = 245 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ QS D +R + Sbjct: 5 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEVL 57 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++S+ R E+ + + G L L+ L + R +K K+ Sbjct: 58 GGHSLANALSQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLPGYIEQRNALKQKIL 112 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 113 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTI--VMMALSEFV 165 >gi|313903191|ref|ZP_07836584.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313466502|gb|EFR62023.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 408 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + +RAGLP+S + +V Q +R ++ G L E+++ Sbjct: 72 FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHAR----- 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++L G L E LA L+ R ++ KV++ A+++ Sbjct: 127 GAFDDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKVRSALA---YPAFVLLVAAA 183 Query: 139 CVSTLVYFTSPGYMNVL 155 V+ +V F P ++ + Sbjct: 184 VVAVMVTFIVPTFVGIF 200 >gi|212633385|ref|YP_002309910.1| type II secretion system protein [Shewanella piezotolerans WP3] gi|212554869|gb|ACJ27323.1| Type II secretion system protein [Shewanella piezotolerans WP3] Length = 406 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNQHPDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F ++I V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 ALFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|170699039|ref|ZP_02890096.1| general secretion pathway protein F [Burkholderia ambifaria IOP40-10] gi|172059126|ref|YP_001806778.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6] gi|170136075|gb|EDT04346.1| general secretion pathway protein F [Burkholderia ambifaria IOP40-10] gi|171991643|gb|ACB62562.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6] Length = 405 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTV--VMMALSEFV 221 >gi|300690059|ref|YP_003751054.1| general Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum PSI07] gi|299077119|emb|CBJ49743.1| General Secretory Pathway protein F, type II secretion system [Ralstonia solanacearum PSI07] Length = 403 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+A + Q+ V + G SLS ++S+ R + Sbjct: 73 LASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSLSVALSQHPR-----DF 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL L+ L+ + R + +K++ + ++ V Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ + P ++V N + L + ++ Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIVMLWL 215 >gi|229590683|ref|YP_002872802.1| general secretion pathway protein F/S [Pseudomonas fluorescens SBW25] gi|229362549|emb|CAY49456.1| general secretion pathway protein F/S [Pseudomonas fluorescens SBW25] Length = 402 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 18/172 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 68 ATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLAEALA-----TR 122 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L++ + L+ + +R N+++K+ + + ++ Sbjct: 123 PRDFPAIYRALIAAGEESGDLAQVMERLADYIEERNNLRSKILTAFIYPGVVGLVSIAIV 182 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV------------AAAFMLIGIM 177 + + V + D G L + M G Sbjct: 183 IFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGVWCFGLMAAGFW 234 >gi|331701309|ref|YP_004398268.1| type II secretion system F domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128652|gb|AEB73205.1| Type II secretion system F domain protein [Lactobacillus buchneri NRRL B-30929] Length = 353 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 N D + + G ++ A+ I + + VI + G SES+ ++ Sbjct: 33 NFFDSLANLLSIGFSLTQALKFIAD-TDKQLSRGVNVVIGSLKSGREFSESVRPLIETQA 91 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + G LS+ L L+ R R K++A+ + I+G+L Sbjct: 92 YHQ-------LLIAEKHG-QLSDILNELANFDRLRLKQLKKIKAMLVYPLFLCLILGTLI 143 Query: 138 FCVSTLVY 145 + V Sbjct: 144 LMIRVYVL 151 >gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970] gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC 43768] gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640] gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970] gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC 43768] gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009] gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06] Length = 410 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 23/172 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ +P +E I G +LS + S +Y Sbjct: 79 LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRSNVEQGSTLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAVYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177 V + G M+L +A F + G + Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244 >gi|148272103|ref|YP_001221664.1| hypothetical protein CMM_0924 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830033|emb|CAN00961.1| conserved membrane protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 341 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + V + G L+ +L L+ L D ++ A++ + +P L Sbjct: 114 LAAGLEVADRTGAPLARSLDRLADSLVDIVRVRRDAGTALAGPVATSRTVLLMPGAGLLL 173 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + VL+ G + L V ++ + IG R ++ Sbjct: 174 AAGLGFDPLRVLVTTVPGLVCLVVGSSLVAIGWRWNRRLV 213 >gi|50841534|ref|YP_054761.1| membrane associated protein [Propionibacterium acnes KPA171202] gi|295129572|ref|YP_003580235.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|50839136|gb|AAT81803.1| membrane associated protein [Propionibacterium acnes KPA171202] gi|291376741|gb|ADE00596.1| type II secretion system F domain protein [Propionibacterium acnes SK137] gi|313771159|gb|EFS37125.1| type II secretion system F domain protein [Propionibacterium acnes HL074PA1] gi|313811815|gb|EFS49529.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA1] gi|313832351|gb|EFS70065.1| type II secretion system F domain protein [Propionibacterium acnes HL007PA1] gi|313832810|gb|EFS70524.1| type II secretion system F domain protein [Propionibacterium acnes HL056PA1] gi|314975243|gb|EFT19338.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA1] gi|314977658|gb|EFT21753.1| type II secretion system F domain protein [Propionibacterium acnes HL045PA1] gi|314985157|gb|EFT29249.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA1] gi|315081600|gb|EFT53576.1| type II secretion system F domain protein [Propionibacterium acnes HL078PA1] gi|315097117|gb|EFT69093.1| type II secretion system F domain protein [Propionibacterium acnes HL038PA1] gi|327332546|gb|EGE74281.1| membrane associated protein [Propionibacterium acnes HL096PA2] gi|327446675|gb|EGE93329.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA2] gi|327448882|gb|EGE95536.1| type II secretion system F domain protein [Propionibacterium acnes HL043PA1] gi|328759745|gb|EGF73341.1| membrane associated protein [Propionibacterium acnes HL099PA1] Length = 300 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|296120696|ref|YP_003628474.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013036|gb|ADG66275.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 406 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 12/164 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+ +S A+ + Q+ P ++ + E G S ++S R + V Sbjct: 77 LAVVVDAGVALSVALEGLASQAVSPALKQMLTTIEERVKSGDDFSTALSEFPRSFDARYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L+ L+ L+ + +VQ M +A ++ + C+ Sbjct: 137 NLVK-----AGEATGHLGPILSRLAEQLQQESETRQRVQGAMMYP--AAMLLMCVGACIF 189 Query: 142 TLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 L Y +P + I P +L + + G ++ Sbjct: 190 LLTYVFPKIAPMFAGRGIELPAATRILLTVSNSLT-GYWWAWIL 232 >gi|268679669|ref|YP_003304100.1| type II secretion system F domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617700|gb|ACZ12065.1| Type II secretion system F domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 413 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 70/156 (44%), Gaps = 11/156 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + +I+K+ + A+ + AG+ + D+V + + D +++ F+ + + Sbjct: 61 LGTVIRKKIK--ITSLIAAIRQLSVMTNAGISIHDSVKEVANATVDKTLKTIFQSINDDL 118 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + GLSL++S+ +V + + + GN++E+L L+ IL + + + K Sbjct: 119 NSGLSLTQSLMSYRE-----DVGDVTIAMVELGESTGNMAESLEKLAEILEEIEENRQKF 173 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + ++ ++ + L+ + P + ++ Sbjct: 174 KKAL---RYPTTVVIAIAIAFTILMVYVVPKFKDIF 206 >gi|194291073|ref|YP_002006980.1| general secretory pathway protein f, type II secretion system [Cupriavidus taiwanensis LMG 19424] gi|193224908|emb|CAQ70919.1| General Secretory Pathway protein F, type II secretion system [Cupriavidus taiwanensis LMG 19424] Length = 405 Score = 43.9 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 16/172 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L + A F + AGLP+ +A+ + Q+ P E I + + Sbjct: 61 RKLSTQEQALFTRQL-------ASLIVAGLPLDEALGALADQAERPYVHELLAGIRAEVM 113 Query: 62 GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S LS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSALSVALAQHPR-----DFPDIYRALVSAGEHSGHLGVVLERLAGYIESRNTLTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + ++ V L+ + P ++V N + L + ++ Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 217 >gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R] gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R] Length = 258 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 7/143 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60 H +RT + + L + ++RAG+ + DA+ + ++ + + Sbjct: 75 HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + L ++ + + G L + + + ++ + Sbjct: 134 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189 Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143 A +A+A I+ LP + Sbjct: 190 AALQGPQATAVILTVLPLAGLLM 212 >gi|330446777|ref|ZP_08310428.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490968|dbj|GAA04925.1| bacterial type II secretion system F domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 408 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 14/150 (9%) Query: 12 FLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 F P L I R + +AG+P+ A + ++ P +++ V + GL+L Sbjct: 60 FQAQLPLEILVIFCRQLYSLTKAGVPLLRAFKGLSQSANHPLLKTTLEEVTQDLTNGLAL 119 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S S+ + R F ++I V + G L + L L+ + +++ Sbjct: 120 SASMQQHPRVFS----RLFISMIHV-GENTGRLDQVLLQLANYYEQEMKTRRQIK---SA 171 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ ++ + L P + ++ Sbjct: 172 MRYPTFVLTAIVIAMGILNTKVIPQFASMF 201 >gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074] gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074] gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074] Length = 307 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78 LD++ S+ G + +A+ S R + + G S +++ + + + Sbjct: 172 LDLVSMSLAGGRGLPEALMAAAEVSDGWAAKRIRNALNDARITGHSQWQALGELGEELGI 231 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +E+ + +++ + G + E+LA+ + +R R+ + + + K+ + ++ L Sbjct: 232 EELKDLAASLALVADDGAKVRESLASRAETMRHREMAEIE---GAAGEKSQSMLVAQLLL 288 Query: 139 CVSTLVYFTSPGYMNVL 155 C LV+ P M V Sbjct: 289 CAGFLVFLIFPAAMRVF 305 >gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 198 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +++ + AGL V A + + + + V +G+ + M + L+ Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKGHAGLE 123 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + ++ + Q G ++ + LR A+ A + A + +LP Sbjct: 124 DL---AQLVIMSGQSGATIAAGCHRICTSLR------AEASAHATAQAERAGVFIALPLA 174 Query: 140 VSTLVYFT 147 V L F Sbjct: 175 VCFLPAFI 182 >gi|134298900|ref|YP_001112396.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134051600|gb|ABO49571.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 401 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 13/159 (8%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR K + + + AG+P++ + + Q+S+P + S V G+ Sbjct: 56 KRKVKLGE-LAFFSRQLAAMLTAGIPLTRCLYTLSEQTSNPILASCAGEVASKVESGIGF 114 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++S + ++ G+L+E L LS L K ++ ++A + Sbjct: 115 SEALSSHKAIFSTMYIEMVK-----AGEMSGSLNEILTRLSLQLEKDKLLRDSLKAATF- 168 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + ++ + +++F P ++ + P G L Sbjct: 169 --YPSIVLTFAGLVILAMMFFVVPIFIGMF---PPGMKL 202 >gi|254230334|ref|ZP_04923721.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25] gi|262393317|ref|YP_003285171.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25] gi|151937158|gb|EDN56029.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25] gi|262336911|gb|ACY50706.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25] Length = 407 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58 + H +K R F I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKGRDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +S+++ + T + + GNL+E L+ + ++AK Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147 V A I ++ V+ V F Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188 >gi|301165488|emb|CBW25059.1| pilus-assembly protein [Bacteriovorax marinus SJ] Length = 406 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 12/147 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D N + + AG+P+ A+ +I P ++ + + G +++E++ + Sbjct: 68 KDLANFTKQLSIMINAGVPILQALEIIFKSEKQPTLKKSVKNIARDVGEGQTIAEAMEK- 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + + GG L E L LS L ++ KA+V+ A +I Sbjct: 127 -----QKGFNKLYCNLVKAGEAGGILDEILEKLSVHLEKQEKTKAQVK----SAMMYPFI 177 Query: 133 IGSLPFCVS-TLVYFTSPGYMNVLIND 158 + + F V ++ F P ++ +L + Sbjct: 178 VTLVGFGVIWGMMVFVVPQFVGMLADT 204 >gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC 2396] gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC 2396] Length = 409 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 9/129 (6%) Query: 28 RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 RAG+P+ A+ + + + V G++L+ ++ R F + Sbjct: 82 RAGIPIIRAIRGLAESTRSETLAEVLDDVARRLEGGVNLATAMRAHPRTFN----ELFVS 137 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 +I V + G L E+ L + ++ + +V + ++ ++ + + +F Sbjct: 138 MILV-GENTGQLEESFRQLGENIELERDTRKRV---GQAVRYPIMVVVAITIALLVVNFF 193 Query: 147 TSPGYMNVL 155 P + V Sbjct: 194 VIPAFAGVF 202 >gi|23465097|ref|NP_695700.1| hypothetical protein BL0507 [Bifidobacterium longum NCC2705] gi|23325711|gb|AAN24336.1| hypothetical protein BL0507 [Bifidobacterium longum NCC2705] Length = 230 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L+ + + +LG L + R + M+ KA+ ++ +LP Sbjct: 120 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 179 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L+ PRG + L + G+ MR ++ Sbjct: 180 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 226 >gi|222056454|ref|YP_002538816.1| type II secretion system protein [Geobacter sp. FRC-32] gi|221565743|gb|ACM21715.1| type II secretion system protein [Geobacter sp. FRC-32] Length = 405 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F +D +GLP+ + ++ GQ + + +V E+ G + ++++S Sbjct: 70 FTRQFATMID-------SGLPLVQCLEILSGQQENKSFKEILIKVKESVESGSTFADALS 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + V+ + + GG L L L+ + +K +V+ Sbjct: 123 KHPKAFDQLYVNLVA-----AGEAGGILDTILNRLAAYIEKAMKLKKQVKG---AMVYPI 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 I+ V ++ F P + D G Sbjct: 175 TIMSIAVIVVGVILVFVIPT-FAKMFADFGG 204 >gi|313817686|gb|EFS55400.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA2] gi|314961706|gb|EFT05807.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA2] gi|315086656|gb|EFT58632.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA3] Length = 300 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|115350106|ref|YP_771945.1| general secretion pathway protein F [Burkholderia ambifaria AMMD] gi|115280094|gb|ABI85611.1| general secretion pathway protein F [Burkholderia ambifaria AMMD] Length = 405 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221 >gi|289626922|ref|ZP_06459876.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867360|gb|EGH02069.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 405 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +RS + + G S + ++ R Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + ++ G L A M+IG+ Sbjct: 187 ILLIKVVPQFQSIF--SSFGAEL--PAFTLMVIGL 217 >gi|224373171|ref|YP_002607543.1| msha biogenesis protein mshg [Nautilia profundicola AmH] gi|223589457|gb|ACM93193.1| msha biogenesis protein mshg [Nautilia profundicola AmH] Length = 414 Score = 43.9 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPL 78 + + ++AG+ + DA+ I + D + E F + E G SLS++ + Y+ Sbjct: 78 IRQLAVLIKAGISLKDALEDIANNTKDALIKEVFLKAAEAIDSGKSLSDTFAEYEEYLGG 137 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + ++ + Q G +L AL +L++I + + K+ + + ++ Sbjct: 138 ISL----AMVRLGEQTG-DLVMALESLAQIYENMYENRRKMVKAL---RYPVITLIAIAA 189 Query: 139 CVSTLVYFTSPGY 151 + L+ P + Sbjct: 190 AFTFLILVVVPKF 202 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 15/140 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + +++G+P+ DA+ + G + ++++ + +I+ + G S +E ++ Sbjct: 281 FLMTMASLLKSGIPLVDALKISEGIIENEVLKNKIKEIIKGINQGRSFAEMVAE------ 334 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 V+F + + + G L L + + DR + A I + Sbjct: 335 QNLVNFVALRMISAGEDSGELDSMLESAAGYYEDRFQ--------DIIDNMQASIEPIML 386 Query: 138 FCVSTLVYFTSPGYMNVLIN 157 + LV + G + + Sbjct: 387 TVIGGLVLLIALGIFLPMWD 406 >gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102] gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102] Length = 413 Score = 43.9 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 6/185 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R + +D + ++AGLP+ A ++ S+P +E ++ Sbjct: 62 VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + P + F + + GG L L L+ + +K KV+ Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + +L F + V + + G L + + + + + Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMNLSDLFVDYGWIM 235 Query: 181 LMINF 185 +++ Sbjct: 236 IILLI 240 >gi|330954319|gb|EGH54579.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 405 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G A M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217 >gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 336 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 RT PN + +G+ + +A+ + + +++ + Sbjct: 115 RTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIKKLDNEVSWNIPFIN 174 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I R + +I+ SQ GG++SE L + + +L+ E + Sbjct: 175 AIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAAND-------SYEFVSLATERR 227 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + I + + Sbjct: 228 NNMLIYIVIVLVSFLVFLLV 247 >gi|78064719|ref|YP_367488.1| general secretion pathway protein F [Burkholderia sp. 383] gi|77965464|gb|ABB06844.1| General secretion pathway protein F [Burkholderia sp. 383] Length = 405 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L + M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221 >gi|171318825|ref|ZP_02907962.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5] gi|171095966|gb|EDT40899.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5] Length = 405 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221 >gi|15799790|ref|NP_285802.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 EDL933] gi|15829364|ref|NP_308137.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. Sakai] gi|168752499|ref|ZP_02777521.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4113] gi|168755715|ref|ZP_02780722.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4401] gi|168764861|ref|ZP_02789868.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4501] gi|168770427|ref|ZP_02795434.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4486] gi|168776814|ref|ZP_02801821.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4196] gi|168781992|ref|ZP_02806999.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4076] gi|168789634|ref|ZP_02814641.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC869] gi|168801439|ref|ZP_02826446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC508] gi|195938213|ref|ZP_03083595.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. EC4024] gi|208808762|ref|ZP_03251099.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4206] gi|208812868|ref|ZP_03254197.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4045] gi|208820726|ref|ZP_03261046.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4042] gi|209397106|ref|YP_002268712.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4115] gi|217325515|ref|ZP_03441599.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. TW14588] gi|254791241|ref|YP_003076078.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. TW14359] gi|261226861|ref|ZP_05941142.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. FRIK2000] gi|261255265|ref|ZP_05947798.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. FRIK966] gi|291280931|ref|YP_003497749.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str. CB9615] gi|12512815|gb|AAG54410.1|AE005187_3 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake [Escherichia coli O157:H7 str. EDL933] gi|13359566|dbj|BAB33533.1| putative integral membrane protein HofC [Escherichia coli O157:H7 str. Sakai] gi|187767814|gb|EDU31658.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4196] gi|188013667|gb|EDU51789.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4113] gi|189000460|gb|EDU69446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4076] gi|189357065|gb|EDU75484.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4401] gi|189360687|gb|EDU79106.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4486] gi|189365208|gb|EDU83624.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4501] gi|189370836|gb|EDU89252.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC869] gi|189376381|gb|EDU94797.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC508] gi|208728563|gb|EDZ78164.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4206] gi|208734145|gb|EDZ82832.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4045] gi|208740849|gb|EDZ88531.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4042] gi|209158506|gb|ACI35939.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. EC4115] gi|209746384|gb|ACI71499.1| putative integral membrane protein HofC [Escherichia coli] gi|209746386|gb|ACI71500.1| putative integral membrane protein HofC [Escherichia coli] gi|209746388|gb|ACI71501.1| putative integral membrane protein HofC [Escherichia coli] gi|209746390|gb|ACI71502.1| putative integral membrane protein HofC [Escherichia coli] gi|209746392|gb|ACI71503.1| putative integral membrane protein HofC [Escherichia coli] gi|217321736|gb|EEC30160.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str. TW14588] gi|254590641|gb|ACT70002.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O157:H7 str. TW14359] gi|290760804|gb|ADD54765.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str. CB9615] gi|320190373|gb|EFW65023.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. EC1212] gi|320642143|gb|EFX11494.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. G5101] gi|320647506|gb|EFX16301.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. 493-89] gi|320652840|gb|EFX21078.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. H 2687] gi|320658229|gb|EFX25958.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663538|gb|EFX30822.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668850|gb|EFX35645.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str. LSU-61] gi|326345176|gb|EGD68919.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. 1125] gi|326346970|gb|EGD70704.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7 str. 1044] Length = 400 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R R ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P G +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKL 233 Query: 178 VMRL 181 +MR Sbjct: 234 LMRR 237 >gi|322418665|ref|YP_004197888.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320125052|gb|ADW12612.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 401 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 8/136 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++ ++AGLP+ A+ I+ + + + E G++LS + + R P Sbjct: 72 LLVLLKAGLPIIQALDTILESGTGKLNEILSAIREDIKGGMALSAAFEKYPRVFP----Q 127 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + I + G+L + + L+ + + K+ A +I +S Sbjct: 128 LYIASIR-AGERTGDLPQTIRRYIAFLKRTEGFRGKI---IAALFYPAILITVATLAISM 183 Query: 143 LVYFTSPGYMNVLIND 158 L+ + P + + Sbjct: 184 LLIYVVPTFSQIYAGS 199 >gi|269966287|ref|ZP_06180375.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B] gi|269829084|gb|EEZ83330.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B] Length = 407 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58 + H +K R F I + G+P+ A+ ++ ++S V Sbjct: 60 LSHRVKGRDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G +S+++ + T + + GNL+E L+ + ++AK Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147 V A I ++ V+ V F Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188 >gi|282899279|ref|ZP_06307250.1| type II secretion system protein [Cylindrospermopsis raciborskii CS-505] gi|281195848|gb|EFA70774.1| type II secretion system protein [Cylindrospermopsis raciborskii CS-505] Length = 419 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 54/149 (36%), Gaps = 15/149 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 A F F V +G+ + ++ +I Q +P ++ ++ G++LS+ Sbjct: 81 KAIFSRQF-------ATLVNSGVTIIKSLDIISLQCPNPKLKKALNQISTDIKTGINLSD 133 Query: 68 SISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 S+ + + + + GG L + L L+++L D ++ ++++ Sbjct: 134 SMKK------HPDCFDALYISMVQAGEAGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYP 187 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ ++ + + Sbjct: 188 IFVGCFAIAIALAMTIFIIPIFANVFKNM 216 >gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 287 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 3/136 (2%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68 + +FP LD+++ + +G+ + I + V ++ G+ ++ Sbjct: 135 IMAEFPFLLDLMLMMLESGISLDQCFRSIARDEAIAVPHHARLIAMLVADLDRGMRYEQA 194 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + R + + + + G L+ AL R R+ A+ + + Sbjct: 195 LDRWAARVAVNGAKELAALFRQALFQGVELAPALREFVREFTQRRVANAREAMGGITVRM 254 Query: 129 SAWIIGSLPFCVSTLV 144 +I + ++ Sbjct: 255 VVLMILFFMPALFVVL 270 >gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 410 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GL + A+A++ Q+ P+ +V +G++ S ++ + P Sbjct: 80 LATMIDSGLSLLRALAILSEQTESKPLAKVLAQVRSDVEVGVAFSTALGKHPTVFPP--- 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++GG L E L +++ ++ K+++ + + Sbjct: 137 --LMINMVKAGEVGGFLDETLVSVANNFEAEVKLRGKIKSAMTYPVVVFVVAILATTGML 194 Query: 142 TLVYFTSPGYMNVL 155 + G + L Sbjct: 195 LFIVPIFAGMFSSL 208 >gi|189440158|ref|YP_001955239.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A] gi|227545622|ref|ZP_03975671.1| Flp pilus assembly protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133503|ref|YP_004000842.1| tadb [Bifidobacterium longum subsp. longum BBMN68] gi|317483639|ref|ZP_07942615.1| tadB protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428593|gb|ACD98741.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A] gi|227213738|gb|EEI81577.1| Flp pilus assembly protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517621|emb|CBK71237.1| hypothetical protein BIL_18120 [Bifidobacterium longum subsp. longum F8] gi|311772746|gb|ADQ02234.1| TadB [Bifidobacterium longum subsp. longum BBMN68] gi|316914917|gb|EFV36363.1| tadB protein [Bifidobacterium sp. 12_1_47BFAA] Length = 218 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%) Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L+ + + +LG L + R + M+ KA+ ++ +LP Sbjct: 108 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 167 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + L+ PRG + L + G+ MR ++ Sbjct: 168 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 214 >gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289688021|gb|EFD55509.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length = 165 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%) Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G ++ + R + +R+ A+V A A+ASA I+ LP L ++ Sbjct: 72 GLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSF 131 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L+ G LL V G++ + + Sbjct: 132 LLTGRVGGWLLVVGLTLACAGLLWSDRITD 161 >gi|257484001|ref|ZP_05638042.1| type II secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 405 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G A M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217 >gi|298253207|ref|ZP_06976999.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1] gi|297532602|gb|EFH71488.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1] Length = 191 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + LG ++E + + +K + ++ KA+ ++ +LP Sbjct: 84 LSNTLGCAMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +LI G +LL + +G+ + M+ Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179 >gi|124027109|ref|YP_001012429.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456] gi|123977803|gb|ABM80084.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456] Length = 283 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 12/181 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHL 61 + R K F + + AG + + + + ++ E ++ Sbjct: 94 ARNRGQKLEARFLLFAQALATRLLAGAGLIETFERMYREDLRELKEFSIELEYIVSGIRA 153 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKAKVQ 120 G+ + + + P + +S ++ G L E + +S L ++ ++ Sbjct: 154 GIPVDRVLEEASKLTPSPSLHSLLAGLSAAARTGSGLREVVDAAISEYLSTQETEIDRLT 213 Query: 121 ---ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172 +E +A ++ + V L+ + + G + M Sbjct: 214 NSLGALLEFYMAAAVMLPVSIGVVGLLLVFQQVAGLSFDAILFLTTFIGIPVTVAVVVIM 273 Query: 173 L 173 Sbjct: 274 A 274 >gi|256832577|ref|YP_003161304.1| type II secretion system protein [Jonesia denitrificans DSM 20603] gi|256686108|gb|ACV09001.1| type II secretion system protein [Jonesia denitrificans DSM 20603] Length = 410 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 26/177 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + A+ ++ Q+ + ++ V G SLS ++++ + P Sbjct: 80 LATMINAGLSLLRALTILTEQTENKVLQGILGTVRSDVETGGSLSSALAKHPKVFP---- 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + GG L + L ++++ D +K K++ ++ + Sbjct: 136 PLMINMVR-AGETGGFLDKTLLSIAKNFEDEVKLKGKIK---SAMTYPVVVLVIAILASA 191 Query: 142 TLVYFTSPGYMNVLINDPRG----------------HMLLGVAAAFMLIGIMVMRLM 182 ++ F P + G M + + G + + Sbjct: 192 GMLIFIVP-VFAGMFATLGGELPFVTQILVTMSDFLKMAIWPILLLVFAGFIWWNRI 247 >gi|297243109|ref|ZP_06927047.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD] gi|296889320|gb|EFH28054.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD] Length = 191 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + LG ++E + + +K + ++ KA+ ++ +LP Sbjct: 84 LSNTLGCAMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +LI G +LL + +G+ + M+ Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179 >gi|326318814|ref|YP_004236486.1| Type II secretion system F domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375650|gb|ADX47919.1| Type II secretion system F domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 427 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 11/159 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ S P + + V++ G LS ++S+ Sbjct: 97 LSIMLRAGLALDNALRVLIDMSHKPSMAVLLQGVLDAVKGGTPLSRALSQHRDLFG---- 152 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ +I + G +S L L + ++ ++ V + ++ A ++G + Sbjct: 153 DFYINMIR-SGEASGQMSAVLERLVAHMERQRALRDSVISATI---YPAILLGVAVLSLI 208 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ F P L D G L M +G R Sbjct: 209 AMLGFVVPQ-FEKLFTD-MGDALPLPTQLVMALGHAFTR 245 >gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413] gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413] Length = 407 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80 + V AG+ + + V+ Q ++ ++ + G++LS+++ + + Sbjct: 76 LATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRK------HPDC 129 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + ++GG L E L L+++L D ++ ++++ + ++ + Sbjct: 130 FDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGILATAIFVGM 189 Query: 141 STLVYFTSPGYMNVL 155 + + L Sbjct: 190 TVFLIPIFAKIFVEL 204 >gi|296130610|ref|YP_003637860.1| hypothetical protein Cfla_2776 [Cellulomonas flavigena DSM 20109] gi|296022425|gb|ADG75661.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109] Length = 243 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 38/92 (41%) Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + G L++ L +L+ + ++++ +A+A ++ +LP + Sbjct: 147 ETGAPLADVLEHLADAVAADAEQAGELESALAGPRATARVLAALPVLGLLVGAGMGARPW 206 Query: 153 NVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +VL + G + ++ G + ++ ++ Sbjct: 207 DVLTDGGFGSAVAVTGVGLLVAGQVWVQALLR 238 >gi|261211521|ref|ZP_05925809.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341] gi|260839476|gb|EEX66102.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341] Length = 408 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASPHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DALYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|300813874|ref|ZP_07094179.1| type II secretion system F domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512061|gb|EFK39256.1| type II secretion system F domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 389 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 65/166 (39%), Gaps = 19/166 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +++G+ + +A+ ++ ++ R+ ++ + H G+SLS+++++ + + F Sbjct: 72 LKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKK------FTDFIV 125 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWIIGSLPFCVST 142 + + NL + L+ + + ++ + + SA ++ L V Sbjct: 126 SLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLMLNVIP 185 Query: 143 L---VYFTSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMVM 179 +Y + + ++ G + ++ F+ I + Sbjct: 186 TFADIYDQAGESLPLMTRLLIGFSKILRENFIIISFIFLAISFFFI 231 >gi|83746394|ref|ZP_00943446.1| GspF [Ralstonia solanacearum UW551] gi|207722786|ref|YP_002253221.1| general secretory pathway protein f [Ralstonia solanacearum MolK2] gi|207744655|ref|YP_002261047.1| general secretory pathway protein f [Ralstonia solanacearum IPO1609] gi|83726935|gb|EAP74061.1| GspF [Ralstonia solanacearum UW551] gi|206587970|emb|CAQ18551.1| general secretory pathway protein f [Ralstonia solanacearum MolK2] gi|206596062|emb|CAQ62989.1| general secretory pathway protein f [Ralstonia solanacearum IPO1609] Length = 403 Score = 43.5 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+A + Q+ V + G SLS ++++ R + Sbjct: 73 LASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSLSVALAQHPR-----DF 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL L+ L+ + R + +K++ + ++ V Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ + P ++V N + L + ++ Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215 >gi|157373688|ref|YP_001472288.1| type II secretion system protein [Shewanella sediminis HAW-EB3] gi|157316062|gb|ABV35160.1| type II secretion system protein [Shewanella sediminis HAW-EB3] Length = 406 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + +R + E G LS +++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTSGRPLSSAMNHHPDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F +++ V + G L +A L+ + + + +++ + +++ ++ + Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLAGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|282883324|ref|ZP_06291918.1| putative type II secretion system protein F [Peptoniphilus lacrimalis 315-B] gi|281296828|gb|EFA89330.1| putative type II secretion system protein F [Peptoniphilus lacrimalis 315-B] Length = 389 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 65/166 (39%), Gaps = 19/166 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +++G+ + +A+ ++ ++ R+ ++ + H G+SLS+++++ + + F Sbjct: 72 LKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKK------FTDFIV 125 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWIIGSLPFCVST 142 + + NL + L+ + + ++ + + SA ++ L V Sbjct: 126 SLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLMLNVIP 185 Query: 143 L---VYFTSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMVM 179 +Y + + ++ G + ++ F+ I + Sbjct: 186 TFADIYDQAGESLPLMTRLLIGFSKILRENFIIISFIFLAISFFFI 231 >gi|310765051|gb|ADP10001.1| type IV pilin biogenesis protein [Erwinia sp. Ejp617] Length = 399 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + ++ + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLTHLHQRISAGEPFSQALREWPDIFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + +I+ Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKAL---RYPLFIMAVAL 175 Query: 138 FCVSTLVYFTSPGYMNVL 155 ++ F P ++ + Sbjct: 176 LVSIGMLVFVLPEFVAIY 193 >gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 297 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 4/149 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS- 66 R + LD++ S+ AG V A+ + R+ + T + Sbjct: 149 RRKDMVRALSAFLDLVTLSLAAGGGVEAALKEASLVGDGWAFTALRKALATAEISRVAPW 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ + + + + +++ G + +L+ + LR +A+ +A + Sbjct: 209 QTLGQLGAELDVPALGELAASLALAGSEGAKVRASLSAKAATLRANGLAEAQGEANAASE 268 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + S ++ + ++ P +V+ Sbjct: 269 RMSLPVVVM---GLGFMLLIGYPAMAHVM 294 >gi|84495077|ref|ZP_00994196.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649] gi|84384570|gb|EAQ00450.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649] Length = 246 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 8/172 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL----GLSLSESISRM 72 + ++ + AGLP ++A + S R EF + E G + + + R+ Sbjct: 69 DFAELSAVGLDAGLPAAEAARLACDVGGSAATRPEFAVLGEQITAAQGRGSPIGQCLLRV 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 ++++F + S+ + G + A + +LR+R + L+ +AS W+ Sbjct: 129 AE--GDRDLAFLAAAWSLTDEFGVAAAPAARASAAVLRERAESDDRRMVLAAGPRASMWL 186 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + LP + + + + V G + R ++ Sbjct: 187 LTLLPLTGPLVALVLGLP-VGDVYGSTASLVAAVVGLVLTGCGWLWSRTVLR 237 >gi|302036148|ref|YP_003796470.1| type IV pilus biogenesis protein PilC [Candidatus Nitrospira defluvii] gi|300604212|emb|CBK40544.1| Type IV pilus biogenesis protein PilC [Candidatus Nitrospira defluvii] Length = 405 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 16/153 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F ++ AGLP+ + ++ QS + +R V + G + S+++ Sbjct: 68 FTRQFGTMIN-------AGLPLIQCLDILSTQSENKVLRETVGDVKNSVEAGSTFSDALK 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R + + ++GG L L L++ + +K +++ Sbjct: 121 RHPKV-----FDDLYVNMIHAGEVGGLLDTILTRLAKHIEKAMKLKGQIK---SAMVYPT 172 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 I+G +S L+ + P + + G + Sbjct: 173 AIVGVAVVIISVLMVWVIPVFAQMFTEMSGGKV 205 >gi|300309698|ref|YP_003773790.1| type II secretion system protein [Herbaspirillum seropedicae SmR1] gi|300072483|gb|ADJ61882.1| bacterial type II secretion system protein [Herbaspirillum seropedicae SmR1] Length = 415 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 13/124 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + K+ F ++AGLP+ A+ + + +D + + + Sbjct: 71 RRITDKQIVLFTRQL-------ATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVA 123 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL +++R + + F ++ ++ G L LA ++ ++ KV+ Sbjct: 124 RGDSLHAALARHPQRFD----ALFCQLVR-AAESAGVLDSMLARIASYREKSLALRGKVR 178 Query: 121 ALSM 124 A Sbjct: 179 AALA 182 >gi|224373390|ref|YP_002607762.1| msha biogenesis protein mshg [Nautilia profundicola AmH] gi|223589385|gb|ACM93121.1| msha biogenesis protein mshg [Nautilia profundicola AmH] Length = 405 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-----PVRSEFRRVIETQHLGLSLSESISRMV 73 L+ + + AGL A+ ++VG D +R F + GLSL+ + + Sbjct: 70 VLEQMYVMLDAGL----AIDMVVGNIKDTIKNKRLRQIFYSLENDIKAGLSLTSAFEKFE 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++I + + G +L+ A+ +LS IL + + + +++ + + +I+ Sbjct: 126 KELG----KLTVSMIKLGEETG-DLASAIKDLSVILHEILDNRKRLKKAT---RYPMFIV 177 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 ++ ++ F P + ++ Sbjct: 178 FAMSIAFVIVILFVIPPFKSIF 199 >gi|223365708|pdb|2VMA|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|223365709|pdb|2VMA|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G P+ + + + QS P +R+ V G +LS+S+ Sbjct: 21 LATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 F + ++ + G+L L L+ +R+ ++K+Q S Sbjct: 77 ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117 >gi|206561861|ref|YP_002232626.1| type II secretion system protein F [Burkholderia cenocepacia J2315] gi|198037903|emb|CAR53848.1| type II secretion system protein F [Burkholderia cenocepacia J2315] Length = 405 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221 >gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740] gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes] Length = 415 Score = 43.5 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 33/198 (16%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLG 62 + K K D P A + + AG+ + + +IV +++ ++ FR V+ + G Sbjct: 64 IRGKNRVKLEDMIP-AFRQMSLMLNAGISIHATIEDLIVFSANERLKLIFRDVLSGINSG 122 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 SLSE+ ++ S + + G+LS ALA L+ L + +++ + Sbjct: 123 KSLSEAFGAYQE-----DLGSLSLSLISLGEQTGSLSHALAMLAETLEE---IRSNMAKF 174 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY--------------MNVLINDP-----RGHM 163 + +IG++ L+ P + L+ G M Sbjct: 175 KKALRYPTMVIGAMAIAFVLLIVMVIPKFKAIFDSFNAELPLPTRFLLQTEHILSNYGWM 234 Query: 164 LLGVAAAFMLIGIMVMRL 181 +L ++ G+ ++ Sbjct: 235 ILAG----LITGVWWIKR 248 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 21/150 (14%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 FL + + ++AG+ + +A+ G + + +R +F V + G+ L+E+ Sbjct: 275 FLHAMNQYVSTLSLLLKAGISLEEALESGSGMTGNEHLREKFEGVSDAIRRGVGLTEAFR 334 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 E F G G+L + L + K++ ++ Sbjct: 335 ---------ETHLFEPTTLQMINTGEQSGDLDQMLGVAANYY--------KMRYDNIIDN 377 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 SA+I L ++ +V + G + + Sbjct: 378 LSAYIEPILTAFIAGMVLLLALGIFMPMWD 407 >gi|229589908|ref|YP_002872027.1| putative type II secretion system protein F [Pseudomonas fluorescens SBW25] gi|229361774|emb|CAY48656.1| putative type II secretion system protein F [Pseudomonas fluorescens SBW25] Length = 403 Score = 43.5 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 21/178 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ V Q+ + V G+ L+E+++ Sbjct: 69 ATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLAGVRADVRGGMRLAEALA-----AR 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ + + G+L++ + L+ + +R N++ K+ L+ + S+ Sbjct: 124 PRDFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKI--LTAFIYPGVVGLVSIG 181 Query: 138 FCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + L Y PG ++N G ++G + Sbjct: 182 IVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWLCFAGIVGGFWSWRL 239 >gi|255657468|ref|ZP_05402877.1| type IV pilus assembly protein [Clostridium difficile QCD-23m63] gi|296449063|ref|ZP_06890853.1| type IV pilus assembly protein [Clostridium difficile NAP08] gi|296879886|ref|ZP_06903859.1| type IV pilus assembly protein [Clostridium difficile NAP07] gi|296262156|gb|EFH08961.1| type IV pilus assembly protein [Clostridium difficile NAP08] gi|296429175|gb|EFH15049.1| type IV pilus assembly protein [Clostridium difficile NAP07] Length = 402 Score = 43.1 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 12/175 (6%) Query: 6 KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 +KR D + V +G+ + + +S++ +R E R++ +G Sbjct: 55 RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAEIKVGS 114 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++S+ P +++ + G L E L +++ +K K++ Sbjct: 115 TIADSMLSSKSKFP----KLLGAMVAT-GEATGKLDEVLKSMASFYASEHRVKQKLRN-- 167 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A ++ S + F P +N + G L + M G+ + Sbjct: 168 -AATYPLIVLISSFIMIFIFTAFMVPKMINSITT--VGATLPLITRIVMGFGMFM 219 >gi|121999149|ref|YP_001003936.1| general secretion pathway protein F [Halorhodospira halophila SL1] gi|121590554|gb|ABM63134.1| general secretion pathway protein F [Halorhodospira halophila SL1] Length = 410 Score = 43.1 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 11/153 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VR+GLP+ + + + Q+ ++S V G SL++++ P ++ Sbjct: 80 MATLVRSGLPLEEVLRTVSRQTERKRLKSVLLAVRTRVTEGHSLAQALGDFPHIFP--DI 137 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + G+L L L+ R+ M+ KVQ + + + Sbjct: 138 YRTSVA---AGEQSGHLEVVLERLAEYAEKRQQMRQKVQLALFYPILLTVMAILVTVALL 194 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 V P + V D G L + + + Sbjct: 195 GYVV---PEVIQVF--DNIGQDLPALTIGLIAV 222 >gi|162454530|ref|YP_001616897.1| hypothetical protein sce6250 [Sorangium cellulosum 'So ce 56'] gi|161165112|emb|CAN96417.1| pulF [Sorangium cellulosum 'So ce 56'] Length = 405 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 13/146 (8%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESI 69 KF+ F +D AGLP+ + ++ Q + + ++ + + T G + S+++ Sbjct: 66 KFIRQFATMID-------AGLPLVQCLEILSNQEPNKIFQAALKDIKNTVEQGATFSDAL 118 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R + F + ++GG L L L+ + R + +V+ A Sbjct: 119 RRHPKIFD----DLFVN-LVQAGEVGGILDSILNRLAIYIEKRVKLARQVRGALAYPIAV 173 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ + + + V + Sbjct: 174 IVIMVVVMVVLMSFVIPSFETMFAEF 199 >gi|157963576|ref|YP_001503610.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157848576|gb|ABV89075.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 406 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISEQLTSGRPLSSAMNQHPDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|126701135|ref|YP_001090032.1| type IV pilus assembly protein [Clostridium difficile 630] gi|254977136|ref|ZP_05273608.1| type IV pilus assembly protein [Clostridium difficile QCD-66c26] gi|255094465|ref|ZP_05323943.1| type IV pilus assembly protein [Clostridium difficile CIP 107932] gi|255102721|ref|ZP_05331698.1| type IV pilus assembly protein [Clostridium difficile QCD-63q42] gi|255308542|ref|ZP_05352713.1| type IV pilus assembly protein [Clostridium difficile ATCC 43255] gi|255316216|ref|ZP_05357799.1| type IV pilus assembly protein [Clostridium difficile QCD-76w55] gi|255518878|ref|ZP_05386554.1| type IV pilus assembly protein [Clostridium difficile QCD-97b34] gi|255652057|ref|ZP_05398959.1| type IV pilus assembly protein [Clostridium difficile QCD-37x79] gi|260685031|ref|YP_003216316.1| type IV pilus assembly protein [Clostridium difficile CD196] gi|260688689|ref|YP_003219823.1| type IV pilus assembly protein [Clostridium difficile R20291] gi|306521793|ref|ZP_07408140.1| type IV pilus assembly protein [Clostridium difficile QCD-32g58] gi|115252572|emb|CAJ70415.1| putative type IV pilus secretion protein [Clostridium difficile] gi|260211194|emb|CBA66676.1| type IV pilus assembly protein [Clostridium difficile CD196] gi|260214706|emb|CBE07364.1| type IV pilus assembly protein [Clostridium difficile R20291] Length = 402 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 12/175 (6%) Query: 6 KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 +KR D + V +G+ + + +S++ +R E R++ +G Sbjct: 55 RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAEIKVGS 114 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++++S+ P +++ + G L E L +++ +K K++ Sbjct: 115 TIADSMLSSKSKFP----KLLGAMVAT-GEATGKLDEVLKSMASFYASEHRVKQKLRN-- 167 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A ++ S + F P +N + G L + M G+ + Sbjct: 168 -AATYPLIVLISSFIMIFIFTTFMVPKMINSITT--VGATLPLITRIVMGFGMFM 219 >gi|269796609|ref|YP_003316064.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542] gi|269098794|gb|ACZ23230.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542] Length = 239 Score = 43.1 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 51/166 (30%), Gaps = 16/166 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + VR+G+P A A + G+ + + Sbjct: 81 VITQVAGLVRSGMPPDRAWAGVGVTVRPD--------------GIPTPADLLHLT--SDA 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + Q+G ++ L ++ L A+ +++A ++ LP Sbjct: 125 SQARAVVAACRLAQQVGAPIAPVLDSIVATLVAAAESAAERDTALASPRSTARLLLWLPA 184 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + G + +L+ + A + +G R ++ Sbjct: 185 AGAVVATVLGAGPVQLLLGGGPAVLAPVTGALLLAVGRWWTRRLVQ 230 >gi|311694494|gb|ADP97367.1| general secretion pathway protein F [marine bacterium HP15] Length = 403 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A++ QS P +RS + G +L++S+ R P Sbjct: 73 LATLIQSGIPIEQALSAAAQQSPKPRIRSMLIAIRAKVMEGYTLADSLGEFPRAFP---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + ++ + G+L L L+ +R+ + K+Q ++ + + ++ + Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTENRQEARQKIQLAAIYPIILSIVAIAIVVFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 T V P ++V + G L + A + + + Sbjct: 188 TYVV---PDIIDVFLKQ--GQELPTLTMAMLAVSEFL 219 >gi|254444010|ref|ZP_05057486.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] gi|198258318|gb|EDY82626.1| Bacterial type II secretion system protein F domain [Verrucomicrobiae bacterium DG1235] Length = 422 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 31/188 (16%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV----IETQHLGLSLSESISR 71 + ++AGL + ++ V+ Q + V FR + +E+ G + S++++ Sbjct: 81 LSEFTRKLATLLQAGLTLIRSLEVLKDQEKNVV---FRWIQNSLVESIQSGSTFSDALAN 137 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + E F ++ + G L +LA L+ L + MK++ L+ Sbjct: 138 FPK-----EFDFLYVNMARAGEASGMLEVSLARLATYLEKTERMKSR---LASAMTYPTV 189 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND----------------PRGHMLLGVAAAFMLIG 175 ++ V L+ F P + + I++ + +IG Sbjct: 190 VMILSSIIVMGLLVFVVPSFKQIFIDEIGEDKMPMLTVYVLMVSEFLVAYWYVVIGAVIG 249 Query: 176 IMVMRLMI 183 + V + ++ Sbjct: 250 LFVFKKLV 257 >gi|307720366|ref|YP_003891506.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978459|gb|ADN08494.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 412 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD I + AGLP++ +A V +D +++ F ++ G SL S + Sbjct: 78 LDQIAIMLDAGLPLNYVLAEAVKNQNDEMIKAIFTKINNDIEGGKSLYNSAITFKEQLGF 137 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +S F + G LSE++++L+ IL++ + + K Q + + II ++ Sbjct: 138 ITLSMFKLG-----EETGRLSESVSHLTSILQNIIDNRKKFQKAT---RYPLIIIFAMGI 189 Query: 139 CVSTLVYFTSPGYMNVL 155 S ++ F P + + Sbjct: 190 AFSVVIIFVVPQFKSFF 206 >gi|301058210|ref|ZP_07199260.1| putative type IV fimbrial assembly protein PilC [delta proteobacterium NaphS2] gi|300447712|gb|EFK11427.1| putative type IV fimbrial assembly protein PilC [delta proteobacterium NaphS2] Length = 402 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 17/148 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ + ++ Q + + ++V+ G SL+ES+ Sbjct: 68 FTRQFSTMID-------AGLPLVQGLTILTEQMENKTFKKILKQVVTDVEGGASLAESLQ 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + V+ + ++GG L L LS + + +K++++ A Sbjct: 121 KHPKVFDSLFVNLVA-----AGEVGGILDTILQRLSTHIEKAQKLKSRIKGAMT---YPA 172 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158 ++ VS ++ F P L D Sbjct: 173 IVVAIAILVVSVIMIFVIP-VFESLFRD 199 >gi|17388923|gb|AAF36471.2|AF127982_1 GspF [Burkholderia cenocepacia] Length = 405 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221 >gi|134294191|ref|YP_001117926.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] gi|134137348|gb|ABO53091.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] Length = 405 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + LL + M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSEFV 221 >gi|90580162|ref|ZP_01235969.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14] gi|90438464|gb|EAS63648.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14] Length = 408 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 12/151 (7%) Query: 10 AKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 A F P L I R + +AG+P+ A + +S P+ + +E L L+ Sbjct: 58 ALFQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPL---LKTTLEALTLDLT 114 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++S ++ P F ++I V + G L + L L+ N + +++ Sbjct: 115 NGRALSVAMQQHPRVFSRLFISMIHV-GENTGRLDQVLLQLANYYEQEMNTRRQIK---S 170 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ ++ + L P + ++ Sbjct: 171 AMRYPTFVLTAIVIAMGILNTKVIPQFASMF 201 >gi|289424130|ref|ZP_06425913.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|289154827|gb|EFD03509.1| type II secretion system F domain protein [Propionibacterium acnes SK187] gi|313792522|gb|EFS40608.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA1] gi|313803523|gb|EFS44705.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA2] gi|313814176|gb|EFS51890.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA1] gi|313839670|gb|EFS77384.1| type II secretion system F domain protein [Propionibacterium acnes HL086PA1] gi|315078859|gb|EFT50877.1| type II secretion system F domain protein [Propionibacterium acnes HL053PA2] gi|327457368|gb|EGF04023.1| type II secretion system F domain protein [Propionibacterium acnes HL092PA1] Length = 300 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 165 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 1 MKHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRR 54 M++ + +R + P LD++ +V AGLP A+ V + E RR Sbjct: 1 MRNRLTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTGAEETALRR 60 Query: 55 VIETQHLGLSLSESISRM---VRYMPLQEVSFFSTVISVQSQLGGN 97 V G S E+ + + + + ++ G Sbjct: 61 VAVQLSWGSSPEEAWRDLTGESERWDE-----LAEALLLSTRTGAP 101 >gi|323495863|ref|ZP_08100931.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM 21326] gi|323319079|gb|EGA72022.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM 21326] Length = 408 Score = 43.1 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++++ G LS+S+ Q Sbjct: 77 LATMLVTGVPLIQALKLVADNHRKAEMKSILAQIVKGVESGTPLSKSM-----RTASQHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL E ++ + ++AKV + ++ + Sbjct: 132 DSLYIDLVTSGEQSGNLPEVFERIATYREKSEQLRAKVIKALIYPSM---VMLTALSVTY 188 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 189 LMLTVVIPEFESMF 202 >gi|304315796|ref|YP_003850941.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777298|gb|ADL67857.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 297 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 10/155 (6%) Query: 33 VSDAVAVIVGQSSDPVRSEFRR---VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 + +A+ S+P++S R + E + + E + M E F Sbjct: 144 IINALKSTAPYISNPLKSIIERNVFLFEKTQMNV--LECLDNMASEAGNNEFRKFINFAK 201 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS- 148 + + GGN ++A+A L +++A S A +++I + L+ S Sbjct: 202 MSVKYGGNFNKAIAKLKDQGEKLYSLEA---IKSANASVGSFVILLMIVINLLLMVNISS 258 Query: 149 -PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 P ++++ + G ++ A ++ G+ +++ + Sbjct: 259 DPDIVDIIKSTVTGQVIAVSNAVSIIFGLYMIKNI 293 >gi|317968405|ref|ZP_07969795.1| type IV pilus assembly protein PilC [Synechococcus sp. CB0205] Length = 413 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ ++ ++ Q P+ + V + G SL ++ R Sbjct: 82 LAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRSWPRV-----F 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + GG L E+L L+++L ++ +++ ++ Sbjct: 137 DKLTIAMVEAGEAGGVLDESLRRLAKLLEGNARLQNQIKGAMG---YPVAVLAIAILVFL 193 Query: 142 TLVYFTSPGYMNVL 155 + F P + + Sbjct: 194 GMTIFLIPTFAGIF 207 >gi|314964234|gb|EFT08334.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA1] Length = 196 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 40 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 99 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 100 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 158 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 159 VEAQTASESLTIWMV--IPVLVLGLVLITPP 187 >gi|126176022|ref|YP_001052171.1| type II secretion system protein [Shewanella baltica OS155] gi|125999227|gb|ABN63302.1| type II secretion system protein [Shewanella baltica OS155] Length = 406 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLIAIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured verrucomicrobium HF0070_15G23] Length = 414 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSD--PVRSEFRRVIETQHLGLSLSESI 69 L D N + ++AG+P++ A+ ++ +S P+ S ++ G +LS ++ Sbjct: 73 LQDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVSV--SLLGDVKEGKNLSRAM 130 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 P ++ + GG+L E L L+ ++ KV Sbjct: 131 KSHAEVFPAMYINMV-----RAGESGGSLVEVLERLADHYERFAEVRQKV---ISALVYP 182 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155 A++IG + + + P +M + Sbjct: 183 AFVIGLGFILIFVFMSYILPKFMKIF 208 >gi|158320935|ref|YP_001513442.1| hypothetical protein Clos_1906 [Alkaliphilus oremlandii OhILAs] gi|158141134|gb|ABW19446.1| hypothetical protein Clos_1906 [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 47/135 (34%), Gaps = 2/135 (1%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 + D + S+P+RS ++ ++ + + + + + E+ F + + Sbjct: 136 IFDCFSKTSAYVSEPLRSYIDIMVHEHKYKINPVQCLENLKDKLEISELKLFIENLKICY 195 Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 GGN+ + + + + + + + + L + + + + Y Sbjct: 196 IHGGNIIGLIDAFIEEISQQNDDEDEENTEDSILNMGLYFL--LMLNFTVIYFLINSSYR 253 Query: 153 NVLINDPRGHMLLGV 167 ++ G ++ + Sbjct: 254 YSILEPVWGQIVFAL 268 >gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1] gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1] Length = 296 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 13/179 (7%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65 R P A++ + AG+ ++ + E R +I + G L Sbjct: 115 RRRDIETTLPYAINYLAAMSTAGITPAEVFRQLGNSTIYGESSVEARYIILEVDVFGRDL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121 E++ + P + F G N+S+ + R + A Sbjct: 175 IEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLA 234 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-------NDPRGHMLLGVAAAFML 173 L E+ +A + G+L + + G L P G ++ V M Sbjct: 235 LIAESYVTALVAGTLFMILIQSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLIDSMT 293 >gi|107021572|ref|YP_619899.1| general secretion pathway protein F [Burkholderia cenocepacia AU 1054] gi|116688084|ref|YP_833707.1| general secretion pathway protein F [Burkholderia cenocepacia HI2424] gi|170731434|ref|YP_001763381.1| general secretion pathway protein F [Burkholderia cenocepacia MC0-3] gi|254246657|ref|ZP_04939978.1| General secretion pathway protein F [Burkholderia cenocepacia PC184] gi|11559477|dbj|BAB18790.1| GspF [Burkholderia cepacia] gi|105891761|gb|ABF74926.1| General secretion pathway protein F [Burkholderia cenocepacia AU 1054] gi|116646173|gb|ABK06814.1| general secretion pathway protein F [Burkholderia cenocepacia HI2424] gi|124871433|gb|EAY63149.1| General secretion pathway protein F [Burkholderia cenocepacia PC184] gi|169814676|gb|ACA89259.1| general secretion pathway protein F [Burkholderia cenocepacia MC0-3] Length = 405 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +A+ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++ + R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221 >gi|256821932|ref|YP_003145895.1| type II secretion system protein [Kangiella koreensis DSM 16069] gi|256795471|gb|ACV26127.1| type II secretion system protein [Kangiella koreensis DSM 16069] Length = 414 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 9/155 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + +I +P V+ + G ++S+ +Y Sbjct: 80 FLRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHPKY-- 137 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L + L ++ + +K+K+++ M A +I Sbjct: 138 ---FDDLVCDLIHAGEQSGTLEQMLDRIATYKEKTEALKSKIKSAMM---YPAAVITVSL 191 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 + L+ + P + ++ N L M Sbjct: 192 AVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSM 226 >gi|223365710|pdb|2VMB|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|223365711|pdb|2VMB|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 21 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 F ++++ + G+L L L+ +R+ M++K+Q S Sbjct: 77 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117 >gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 291 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 25 RSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + AGL + + +I Q + + R G ++++ + + + Sbjct: 155 MLMEAGLSLERVLRIIGVQGRPLLPILIARIDRFNRLMKSGAERTQALDELGENKRIPVL 214 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ SQLG +S +L + ++ + + + + + AK + ++ + + Sbjct: 215 RSYVVLMKQSSQLGAGVSHSLDQIIDEAQNVERNRIREETNRIGAKMTVIMMAFMLPALF 274 Query: 142 TLV 144 L+ Sbjct: 275 ILI 277 >gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I] gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I] Length = 311 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 3/141 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSL 65 +R + + P L + +VR+G+ V+ A I + + RR+ + LGL L Sbjct: 72 RRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLLGLDL 131 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I ++R +P + +F I + GG E L S + R + + + + +++ Sbjct: 132 LDAIRLVIRELPKETRKYF-YFIEEAYESGGRAMEVLDKASELARRIREFELE-REKTLK 189 Query: 126 AKASAWIIGSLPFCVSTLVYF 146 + + L F + + + Sbjct: 190 NQGFIILFSVLIFVATAAILY 210 >gi|73542915|ref|YP_297435.1| general secretion pathway protein F [Ralstonia eutropha JMP134] gi|72120328|gb|AAZ62591.1| General secretion pathway protein F [Ralstonia eutropha JMP134] Length = 405 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60 + L + A F + +GLP+ +A+ + Q+ P E + Sbjct: 61 RRLSTQEQALFTRQL-------ASLIVSGLPLDEALGALADQAERPYVHELLAGIRAEVM 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNALTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ V L+ + P ++V N L + + + V Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTK--QKLPTLTIVMLALSDFV 221 >gi|303241413|ref|ZP_07327916.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302591022|gb|EFL60767.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 309 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 2/177 (1%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67 + + AL II S + AV +G + P+ + F+ + ++ +++ + Sbjct: 128 KKQVNAELETALSIITSSYFRNESIITAVQENIGYINPPISNAFKAFLTQANMINVNVKQ 187 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ M + S + + + Q L L + L D + + A++ L E Sbjct: 188 ALNDMKSKLNHHVFSEWVDAM-IACQEDKTLKTTLTPIISKLSDVRIVSAELDYLMYEPL 246 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L L+YF + + VL++ G +L V + + + + + Sbjct: 247 KEFITMALLLVLNIPLIYFLNKDWFRVLVDTVLGKGILAVCTLAIFVSLAAVIRITR 303 >gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662] gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662] Length = 401 Score = 43.1 bits (101), Expect = 0.018, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 71/195 (36%), Gaps = 19/195 (9%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61 L KR K + + ++AG+ + ++ +I + + ++ ++ + Sbjct: 50 LKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIRQ 108 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ LSE++ R P+ + ++ GNL + ++ + KV+ Sbjct: 109 GIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---------AAFM 172 + + ++ + + + + + + + P ++L + Sbjct: 164 AMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMESLPLPTVILLGLSGGIRKYWPFILL 223 Query: 173 LIGIMV--MRLMINF 185 ++ ++ +RL++ Sbjct: 224 ILAAVIFGIRLILRI 238 >gi|313824568|gb|EFS62282.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA2] Length = 300 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|319789966|ref|YP_004151599.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] gi|317114468|gb|ADU96958.1| Type II secretion system F domain protein [Thermovibrio ammonificans HB-1] Length = 404 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 31/181 (17%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPLQEVS 82 + AG+P+ A+ +I Q + R+++E G S +ISR Sbjct: 78 IHAGIPLVQALRIIKEQLPN---RRLRQIVEEIASFIEEGGKFSTAISRYRDIFG----D 130 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + +++ + G L E L L+ L + ++ KV++ + + + Sbjct: 131 LYISMVRAAEEAG-TLEETLKRLADYLEKVEKLRGKVKSALFYPVFVFIVAMLIVTGILV 189 Query: 143 LVYFTSPGYMNVL-----------------INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 V T + + D G ++L + +IG + +R + F Sbjct: 190 FVIPTFEQLYADMGGELPALTQMVIKVSNWVRDYAGWIVLFIVVF--IIGFVQLRRLEKF 247 Query: 186 D 186 Sbjct: 248 R 248 >gi|225570080|ref|ZP_03779105.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM 15053] gi|225161550|gb|EEG74169.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM 15053] Length = 394 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFRRVIE 57 K++ + L D+P ++ + AG+ V + IV E + + Sbjct: 238 KEKRLQMLQDYPELVNKFTLFLGAGMTVRNTWRKIVRDYEKQTEEWGVRYAYEEMKVTLN 297 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMK 116 G++ +ES R R+ +QE F ++S + G +L L + + + + Sbjct: 298 EMQSGITEAESYERFGRHCKVQEYVKFGALLSQNLRKGTKDLVHLLRMDAVQAFEERKTR 357 Query: 117 AKVQALSMEAKASAWIIGSLPFCVST 142 A+ K LP + Sbjct: 358 ARRLGEEAGTKL------LLPMFLML 377 >gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1] Length = 415 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V AG+ + DA+ ++ Q + + V + G+S+SE++S+ P Sbjct: 80 FCRQLGAMVNAGVGIIDALDIVAEQMPNKKLAEAVAEVAKEVSEGMSMSEAMSKRANIFP 139 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +++V + G L AL S +K+K++ A +++ Sbjct: 140 ----ELVVNLVAVGEETG-ELDRALLRASEYYEKLAMIKSKIK---SAAFYPVFVLVIAT 191 Query: 138 FCVSTLVYFTSPGY 151 V+ ++YF P + Sbjct: 192 VIVTGILYFLVPTF 205 >gi|15895249|ref|NP_348598.1| hypothetical protein CA_C1978 [Clostridium acetobutylicum ATCC 824] gi|15024959|gb|AAK79938.1|AE007702_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824] gi|325509395|gb|ADZ21031.1| membrane protein [Clostridium acetobutylicum EA 2018] Length = 279 Score = 43.1 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIET 58 + +L K K D + D+I AG+ + A+ + S ++ R+ Sbjct: 119 LNYLSNKDDKNKIRLDLADVYDLITIQTIAGVSIGHALLEVNTVCKSKRLKKSLIRLAAK 178 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 +L ++ +++ + + E+ F VI G + EAL + S L Sbjct: 179 INLSKNIEKALDEFNQEYDMHEIDAFVAVIKESITSGVS-EEALDDQSSAL 228 >gi|206900573|ref|YP_002250891.1| general secretion pathway protein F [Dictyoglomus thermophilum H-6-12] gi|206739676|gb|ACI18734.1| general secretion pathway protein F [Dictyoglomus thermophilum H-6-12] Length = 400 Score = 43.1 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 16 FPNALD---IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 P + +R+G+ +++ ++ + Q+ + R V + GLSLSE++SR Sbjct: 60 LPELVLFTSQFATLLRSGIILTECLSTLATQTDNAYFRDVLFDVRKNVDAGLSLSEALSR 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P F +++ ++ G+L L LS+ + ++ K+++ + Sbjct: 120 YQNVFP----KIFISLVR-AGEVTGSLDVMLDKLSKYFDLQHELREKIKSATT---YPLI 171 Query: 132 IIGSLPFCVSTLVYFTSPGY 151 + + V ++ F P + Sbjct: 172 VTIAAIIVVIFMLTFVIPTF 191 >gi|325275692|ref|ZP_08141581.1| general secretion pathway protein F [Pseudomonas sp. TJI-51] gi|324099178|gb|EGB97135.1| general secretion pathway protein F [Pseudomonas sp. TJI-51] Length = 401 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 16/152 (10%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66 R + ++AGLP+++A+ + Q + R R V E G +L+ Sbjct: 63 RRSLLTRQL-------ATLLQAGLPLTEALQAVAEQGTRRQERQVLRGVAERVAEGHALA 115 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ R P+ + + + G L++ L L+ D + ++ KVQ Sbjct: 116 QALAHYPRAFPVIYRATVAAA-----ERSGRLADVLERLAAHGEDEQALRQKVQL---AM 167 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 ++ V L+ + P + D Sbjct: 168 VYPVILLAVSLLVVGFLLGYVVPDVVQAFSRD 199 >gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272] gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272] Length = 304 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63 K+R F LD++ ++ G V +A++ G S R +E+ L G+ Sbjct: 154 AKERRRDFRHVVSAFLDLVSMNLAGGRGVPEALSAAAGLSDGWAMVRLRDAMESARLQGV 213 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ + M ++E+S + +++ ++ G + ++LA + +R R+ A+ +A Sbjct: 214 TPWAALGDLGDEMAVKELSDLAAALALVAEDGAKVRQSLAARAASMRQRELTDAEGRAEQ 273 Query: 124 MEAKA 128 Sbjct: 274 QSQSM 278 >gi|145596549|ref|YP_001160846.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440] gi|145305886|gb|ABP56468.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440] Length = 331 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 4/133 (3%) Query: 55 VIETQHLGLSLSESIS-RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + GLS+ +S + + + + + + G L++ L + R Sbjct: 197 LAADLRAGLSVGQSTALSAAGRSGSTLIR---SAVRLADRTGAPLADLLERIDVDARAAD 253 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A A + A+A+AW++ +LP L Y + VL++ G +A + Sbjct: 254 RGRATAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHSAVGGSCAVLAVMLQV 313 Query: 174 IGIMVMRLMINFD 186 G+ + Sbjct: 314 AGLFWAERLTAIR 326 >gi|84386331|ref|ZP_00989359.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01] gi|84378755|gb|EAP95610.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01] Length = 406 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 17/169 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V++G+P+ + + + QS P +R+ V G SL++S+S Sbjct: 75 ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLSDYPHIFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132 F +++ + G+L L L+ +R+ M++K V + S + Sbjct: 131 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPIVLVVFAVTIVSFLL 189 Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +P V ++ P L+ G+ + IG++V+ Sbjct: 190 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLVLTIGVIVL 238 >gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407] gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407] Length = 274 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 59/149 (39%), Gaps = 10/149 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65 K L FP+ + I + A + + AV + D P+ EF + S+ Sbjct: 127 KEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEFIVNCDI----HSV 182 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I ++ + + V +++ + + G ++ E+ +R+ M+ + + Sbjct: 183 EKAIDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFERQIDKVRE---MQLEAIMNRIA 239 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ P ++ + F P + ++ Sbjct: 240 KRQLLAMVLQGPLLLTLIGAFGLPTFYSM 268 >gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis] Length = 410 Score = 42.8 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ A ++ +P +E I G SLS + S +Y Sbjct: 79 LSTMINAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + ++ KV+ + + L F + Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193 Query: 142 TLVYFTSPGYMNVL 155 V + Sbjct: 194 IFVLPAFKEVYANM 207 >gi|281357007|ref|ZP_06243497.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316565|gb|EFB00589.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 419 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 10/155 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ ++ + Q+ +P V+ + ET G + +E++++ R + Sbjct: 86 LAILLSAGLPLIRSLHTLERQAKNPAVKIVLSKTAETVEGGATFAEALAQHPRSFDKLYL 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G + L L+ + + KV+ ++ V Sbjct: 146 NMV-----RAGEASGAMEIILDRLASFMEKAARISGKVK---SAMIYPCVVLTIALLAVV 197 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ F P + + G +++GI Sbjct: 198 GLMIFIVPN-FQKIFTELLGPNEPLPDITLLVMGI 231 >gi|94265745|ref|ZP_01289481.1| type II secretion system protein [delta proteobacterium MLMS-1] gi|93453720|gb|EAT04098.1| type II secretion system protein [delta proteobacterium MLMS-1] Length = 402 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F +D AGLP+ ++ ++ Q +P + R V G + ++++ Sbjct: 68 FTRQLSTMID-------AGLPLVQSLQILGEQQENPTFKKVLRAVRSEVETGSTFADALK 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + ++GG L A L+ + + +K KV+ S Sbjct: 121 KHPHI-----FDNLYCNMMEAGEVGGILDTICARLATFMEKAQALKKKVKGAMTYPIISL 175 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I + + V Sbjct: 176 CIALIVLAVMLIFVVPVFEEMFADF 200 >gi|289427557|ref|ZP_06429270.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|289159487|gb|EFD07678.1| type II secretion system F domain protein [Propionibacterium acnes J165] gi|313806903|gb|EFS45401.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA2] gi|313821487|gb|EFS59201.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA1] gi|313826239|gb|EFS63953.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA1] gi|314926289|gb|EFS90120.1| type II secretion system F domain protein [Propionibacterium acnes HL036PA3] gi|314980210|gb|EFT24304.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA2] gi|314987066|gb|EFT31158.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA2] gi|314990441|gb|EFT34532.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA3] gi|315083128|gb|EFT55104.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA2] gi|315088060|gb|EFT60036.1| type II secretion system F domain protein [Propionibacterium acnes HL072PA1] gi|327333719|gb|EGE75436.1| membrane associated protein [Propionibacterium acnes HL096PA3] gi|327444422|gb|EGE91076.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA2] gi|328757929|gb|EGF71545.1| type II secretion system F domain protein [Propionibacterium acnes HL020PA1] gi|332674442|gb|AEE71258.1| type II secretion system protein [Propionibacterium acnes 266] Length = 300 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|261250569|ref|ZP_05943144.1| general secretion pathway protein F [Vibrio orientalis CIP 102891] gi|260939138|gb|EEX95125.1| general secretion pathway protein F [Vibrio orientalis CIP 102891] Length = 408 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 77 LSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHIFD---- 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++S + G+L L L+ +R+ +++K+Q +A ++ C+ Sbjct: 133 ELFRSMVS-AGEKSGHLDSVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVCIV 187 Query: 142 TLVY 145 + Sbjct: 188 AFLL 191 >gi|153822239|ref|ZP_01974906.1| type IV pilus assembly protein TapC [Vibrio cholerae B33] gi|126520249|gb|EAZ77472.1| type IV pilus assembly protein TapC [Vibrio cholerae B33] Length = 364 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|257051104|ref|YP_003128937.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] gi|256689867|gb|ACV10204.1| type II secretion system protein [Halorhabdus utahensis DSM 12940] Length = 568 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 12/183 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSE 67 + +AL + R V G V A+ Q + Q L LS+ + Sbjct: 345 IRDVESNLTDALYLTGRLVDDGKSVETAIQRAGDQVPAATGELLEQAAGLQRRLHLSVHD 404 Query: 68 SIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK----NMKAKVQ 120 + +V +P V ++++ ++ G A+ +++ L + + + ++ Sbjct: 405 AFLGEYGVVSDVPSPRVRATVELLAIAAEQGAPAGRAIVSMADHLDELRDVEARTRRQLS 464 Query: 121 ALSMEAKASAWIIGSLP----FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ +A G + ++ + + P + L + A + + Sbjct: 465 TITETIDHTATFFGPMVAGATVGLAGGLSGDGTTAIEGATTLPTDQLGLVIGAYVVSLSF 524 Query: 177 MVM 179 +++ Sbjct: 525 ILV 527 >gi|171059294|ref|YP_001791643.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170776739|gb|ACB34878.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 382 Score = 42.8 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 59/136 (43%), Gaps = 15/136 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +R+GL + +A+ + + + +R++E G +LS ++ + Sbjct: 51 LALMLRSGLSLIEALRTVAERQHGSAATAMQRLLEALSQGETLSTALQSSGQ-------- 102 Query: 83 FFSTVISV---QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 FST + S+L G+L+++L ++ + +++++ + + +I Sbjct: 103 -FSTAMLACVKASELTGDLADSLGRFAQNATRMRQLRSRLVSACV---YPGLLITVASLV 158 Query: 140 VSTLVYFTSPGYMNVL 155 V L+ + P + VL Sbjct: 159 VLFLLIYVVPRFAMVL 174 >gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg] gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg] Length = 485 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVR-------- 49 + +++ + L D+P + + AG+ A IV + Sbjct: 307 REREQQKQEQLLLDYPEIMMKYTLLLSAGMTTYGAWERIVKDYNTRRERELGGTRRNKKK 366 Query: 50 --------------SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 E LG+S S + R R L FST+I + G Sbjct: 367 LSKSKSMKSMRYAYEEMIITKNEIDLGVSESVAYERFGRRCKLLSYLRFSTIIVQNMKKG 426 Query: 96 GN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + L S + K QA + +AS ++ + + ++ M Sbjct: 427 NKGMIPMLEAESVQ----ALLDRKEQAKRLGERASTKMLMPMMGMLCIVIAILMVPAMMS 482 Query: 155 L 155 + Sbjct: 483 M 483 >gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 628 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 4/173 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + + ++ K + P+ + AGL V + + V+ + E + Sbjct: 409 LVEIKERVMRKTEERIPDVFSELAMLNEAGLTVLEGLRVLSQTEMGLLTREIAVMRREIE 468 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + + R+ + +S V+ + + +A ++R K +++ Sbjct: 469 WGVLIPRAFIRLGIRVKSDILSKIVPVVVKALETAPTIKDAFNVVARYADTEVAFKKRMR 528 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + ++ II T Y + + G + G A +F + Sbjct: 529 SSTL---LYVIIIYMCIVVFLTTTYMIITSFFKPFVG-LSGVSVGGYALSFDV 577 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60 L K+R + P+A+ ++ G+P+ + + + + EF ++E Sbjct: 127 FLAKRRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVAESKHIFGELSREFMIIVEMVD 186 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 + ++ + + + P ++S F + + GG LSE L Sbjct: 187 VFKRNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLRR 231 >gi|240136824|ref|YP_002961291.1| Type II secretion system protein [Methylobacterium extorquens AM1] gi|240006788|gb|ACS38014.1| Type II secretion system protein [Methylobacterium extorquens AM1] Length = 404 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 20/178 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L V AGL V A+ ++ Q+S ++ ++E G SLS +++ + P Sbjct: 71 FLREFGTLVGAGLTVDRALRLVERQASAALKPVLADILERVVAGASLSRAMAAHPQAFP- 129 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLP 137 ++ I + G L L +L+ + R ++ + A+ A +G+L Sbjct: 130 PDM----VDIVRAGEATGTLVAVLGSLTGSIERRDAVRRHLTSAMIYPALLVLMAVGTLV 185 Query: 138 FCVSTLVYFTSPGY------------MNVLINDPRG--HMLLGVAAAFMLIGIMVMRL 181 V LV +P + + + D G L AA +++G++ Sbjct: 186 MIVVVLVPALAPLFEGSGRAPPLTIRVAAALGDWVGAFWPWLLGGAAVIVLGLVRSWR 243 >gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996] gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996] Length = 413 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 18/192 (9%) Query: 1 MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 +K K+R + F ++AGLP+ A ++ S+P +E + Sbjct: 62 VKATKKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + ++ + P + F + + GG L L L+ + + Sbjct: 112 LMQVRADVEQGSALGKSFAKYP-KYFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAI 170 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFML 173 K KV+ + + +L F + V + + G +++ ++ F+ Sbjct: 171 KKKVKTALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTQIVMDISKIFVE 230 Query: 174 IGIMVMRLMINF 185 G +++ ++I F Sbjct: 231 YGWLMIVMVIAF 242 >gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC BAA-835] gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC BAA-835] Length = 422 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 13/134 (9%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F +D AGLP+ ++ V+ Q ++P +R + ++ G + SE+++ Sbjct: 82 FTRQLATLID-------AGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGSTFSEALA 134 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + R F ++ +LGG L L L+ + +K+KV + + Sbjct: 135 QHPRIFD----RLFVNMVK-AGELGGVLEVVLNRLAEYQEKAQKLKSKVISAMVYPSIVL 189 Query: 131 WIIGSLPFCVSTLV 144 +I + + ++ Sbjct: 190 FIAVGIVIFLMLVI 203 >gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain protein [Actinomyces odontolyticus F0309] Length = 425 Score = 42.8 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 14/172 (8%) Query: 23 IVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + +RAG P S A + V S V E+ R + Sbjct: 111 VATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSLRRAERAPGV 170 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + LG L++ L + + D + ++ + + SA Sbjct: 171 AASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVAAAGPLMSAR 227 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ +LP + G M V G+ R ++ Sbjct: 228 VLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRIL 279 >gi|318042985|ref|ZP_07974941.1| pili biogenesis protein [Synechococcus sp. CB0101] Length = 430 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ ++ ++ Q P+ + V + G SL ++ R + Sbjct: 99 LAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRRWPKV-----F 153 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + GG L E+L L+++L ++ +++ A I + ++ Sbjct: 154 DKLTIAMVEAGEAGGVLDESLRRLAKLLEGNAKLQNQIKGAMGYPVAVLVIAVLVFLGMT 213 Query: 142 TLVYFTSPGYMNVL 155 + T G L Sbjct: 214 IFLIPTFAGIFEDL 227 >gi|237741036|ref|ZP_04571517.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13] gi|229431080|gb|EEO41292.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13] Length = 346 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + +++ + G S+ ES R + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVNGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPDFITIFEENQVELPLITKILLFI 157 >gi|328950485|ref|YP_004367820.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450809|gb|AEB11710.1| Type II secretion system F domain protein [Marinithermus hydrothermalis DSM 14884] Length = 406 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 10/136 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ A+A++ Q+ + + + + G S+++ + Sbjct: 74 LATMLSAGLPIVQALAILERQAENKKFKGILKEIRTDVEGGEPFSDALKKHSA------F 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L L+ L ++ K++ A ++ Sbjct: 128 TRLYINLVRAGETSGTLDLVLERLATFLEKELELRGKIR---SAMTYPAIVLVFAIGVTY 184 Query: 142 TLVYFTSPGYMNVLIN 157 L+ P + +L + Sbjct: 185 FLLAGIVPQFAQILTD 200 >gi|302388991|ref|YP_003824812.1| hypothetical protein Toce_0410 [Thermosediminibacter oceani DSM 16646] gi|302199619|gb|ADL07189.1| hypothetical protein Toce_0410 [Thermosediminibacter oceani DSM 16646] Length = 300 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 64/152 (42%), Gaps = 4/152 (2%) Query: 33 VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + +A+ S+P+RS +R V + S++E + + + +E F + Sbjct: 147 IINALKSTAAYVSEPLRSFLKRNVFLFEKTQRSIAECLDNIAFEVGDKEFRKFINFAKMN 206 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS-PG 150 ++ GGN +AL L +++A A + S I+ + + ++ ++ P Sbjct: 207 AKYGGNFGKALTKLREQAEKLHSLEAIESANAFVG--SLVILFMIVINLVLMLNVSNDPE 264 Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + N G + AA ++ G+ +++ + Sbjct: 265 VALAIRNTVTGQAIAISNAAAIIFGLYMIKNI 296 >gi|256846649|ref|ZP_05552105.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2] gi|294784358|ref|ZP_06749649.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27] gi|256717869|gb|EEU31426.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2] gi|294487930|gb|EFG35285.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27] Length = 346 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + +++ + G S+ ES R + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPDFITIFEENQVELPLITKILLFI 157 >gi|158522859|ref|YP_001530729.1| type II secretion system protein [Desulfococcus oleovorans Hxd3] gi|158511685|gb|ABW68652.1| type II secretion system protein [Desulfococcus oleovorans Hxd3] Length = 403 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 13/111 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ + ++ Q +P R + + ++ G +L++++ Sbjct: 68 FARQFSTMID-------AGLPIVQCLDILFSQEDNPTFRKILKSIKDSVEGGQTLADAMK 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + F +I+ + GG L L LS + +K +V+ Sbjct: 121 PFPDQFD----NLFVNMIA-AGEAGGILDVILKRLSAYMEKAAKLKRQVKG 166 >gi|120554274|ref|YP_958625.1| general secretion pathway protein F [Marinobacter aquaeolei VT8] gi|120324123|gb|ABM18438.1| general secretion pathway protein F [Marinobacter aquaeolei VT8] Length = 403 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 11/158 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+PV A++ QS+ P +RS + G +L++S + P Sbjct: 73 LATLIQSGIPVEQALSAAAQQSTKPRIRSMLIAIRAKVMEGYTLADSFGEFPKAFP---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + ++ + G+L L L+ R+ + K+Q ++ + + ++ + Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTESRQEARQKIQLAAIYPIILSVVAIAIVVFLL 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIM 177 T V P + V + + L VA +G Sbjct: 188 TYVV---PDIIEVFLKQGQELPGLTVAMLSVSEFLGSF 222 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ +A+ + S D +R E R G SL S+ + + P+ + Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDYLRQELREAARKVSEGGSLHRSLDQTGYFPPMM-L 334 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + G L L +R+ Q ++++K +A + P + Sbjct: 335 HMIASG-----EASGELDSMLERTARM-----------QENTLQSKIAAIVGLFEPMMLL 378 Query: 142 TL 143 + Sbjct: 379 FM 380 >gi|134293926|ref|YP_001117662.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] gi|134137083|gb|ABO58197.1| general secretion pathway protein F [Burkholderia vietnamiensis G4] Length = 405 Score = 42.8 bits (100), Expect = 0.023, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ ++++V+ Q+ + VR + Sbjct: 61 RKLSQREQAIITRQL-------ASLLVAGLPLDESLSVLSEQAEREYVRELMASIRAEVV 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++++ R + + + G L LA L+ + +K K+ Sbjct: 114 GGHSFANALTQHPR-----DFPDIYRALVAAGEHTGKLGVVLARLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P NV + L + M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVANVFTSTK--QQLPTLTVVMMALSGFV 221 >gi|332139659|ref|YP_004425397.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] gi|327549681|gb|AEA96399.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii str. 'Deep ecotype'] Length = 411 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 54/164 (32%), Gaps = 6/164 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A+ + S + + + + G SLS ++ + + Sbjct: 79 MYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSAMVKYEKV-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + V + G L + L+ + + ++Q+ + F ++ Sbjct: 134 TRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIQSALRYPTFVLIALAIAMFILN 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 V + + + + + + L++ Sbjct: 194 LFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLILIVLI 237 >gi|282853085|ref|ZP_06262422.1| type II secretion system F domain protein [Propionibacterium acnes J139] gi|282582538|gb|EFB87918.1| type II secretion system F domain protein [Propionibacterium acnes J139] gi|314922728|gb|EFS86559.1| type II secretion system F domain protein [Propionibacterium acnes HL001PA1] gi|314965812|gb|EFT09911.1| type II secretion system F domain protein [Propionibacterium acnes HL082PA2] gi|314982955|gb|EFT27047.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA3] gi|315091259|gb|EFT63235.1| type II secretion system F domain protein [Propionibacterium acnes HL110PA4] gi|315094495|gb|EFT66471.1| type II secretion system F domain protein [Propionibacterium acnes HL060PA1] gi|315105216|gb|EFT77192.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA2] gi|327328989|gb|EGE70749.1| membrane associated protein [Propionibacterium acnes HL103PA1] Length = 300 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D A+ + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V+A + + W++ +P V LV T P Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|259907451|ref|YP_002647807.1| type IV pilin biogenesis protein [Erwinia pyrifoliae Ep1/96] gi|224963073|emb|CAX54556.1| Putative outer membrane protein export (MTB) system [Erwinia pyrifoliae Ep1/96] gi|283477284|emb|CAY73200.1| Type IV pilus assembly protein tapC [Erwinia pyrifoliae DSM 12163] Length = 399 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + ++ + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDIFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + +I+ Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKAL---RYPLFIMAVAL 175 Query: 138 FCVSTLVYFTSPGYMNVL 155 ++ F P ++ + Sbjct: 176 LVSIGMLVFVLPEFVAIY 193 >gi|73542645|ref|YP_297165.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72120058|gb|AAZ62321.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 424 Score = 42.8 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ ++ +I ++P + G S++ + R RY Sbjct: 94 LSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAAAFRRHPRY-----F 148 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG L L LS + +K+++++ + A + ++ + Sbjct: 149 DTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLTVAFAVTVILM 208 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V G + + L+ +A + + + Sbjct: 209 LFVIPAFKGVFSSFGANLPAPTLVVIAISDFFVAYWYI 246 >gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus petrolearius DSM 11571] Length = 324 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 5/174 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ I + + P AL + +G D + + ++ + EF +V+ Sbjct: 132 LQNQISNKKMDIERNLPYALAFMSILASSGTTPLDILKSVANENYGHISREFSKVLFRVE 191 Query: 61 -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG +++ +V P IS GG LS L S+ L + + K Sbjct: 192 ILGEDAVTAMNALVSNTPSDPFRDICIDISNLIYGGGGLSGYLNAKSKELMNIRRQTDKE 251 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM----NVLINDPRGHMLLGVAA 169 S+ ++ G + ++ G + L D +L+ VA Sbjct: 252 FVESLGVFGEGYLGGVIMVLTLAILGIVITGALGIQIGPLKTDEMFFVLIYVAV 305 >gi|225848333|ref|YP_002728496.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644500|gb|ACN99550.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 408 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESIS 70 F ++ AG+ ++ A+ ++ Q +P E +V + G+SLS++++ Sbjct: 75 FTRQLGAMIN-------AGIGITQALEILAQQMPNPTLQEAINKVRDDVVTGMSLSKTMA 127 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P F ++ + G L E L + +K K+++ S A Sbjct: 128 KHPNVFP----PFLVNLVDAAEESG-KLDETLKRATVYYEKLAAIKGKIKSASWYPTAVL 182 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I + + T V T + + Sbjct: 183 VIATLIVLGLLTFVVPTFAEIYSSM 207 >gi|313835132|gb|EFS72846.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314929110|gb|EFS92941.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970945|gb|EFT15043.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328905820|gb|EGG25596.1| LOW QUALITY PROTEIN: type II secretion system F domain protein [Propionibacterium sp. P08] Length = 300 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78 +D++ + A A+ S PV + R +E L S + + + L Sbjct: 164 VDLVTLARLANQSAPRALVEAAQISDHPVLARIRTTLERSRLEQQSPWAGLDGLSEELGL 223 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E++ V+ + Q G +L+ AL +RD + KV+A + + W++ +P Sbjct: 224 PELAELVEVLRLDDQ-GASLAGALRARVNEMRDAHLNREKVEAQTTSESLTIWMV--IPV 280 Query: 139 CVSTLVYFTSP 149 V LV T P Sbjct: 281 LVLGLVLITPP 291 >gi|300697013|ref|YP_003747674.1| type II secretion system protein F (gspF) [Ralstonia solanacearum CFBP2957] gi|299073737|emb|CBJ53258.1| putative type II secretion system protein F (gspF) [Ralstonia solanacearum CFBP2957] Length = 399 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 55 LKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 112 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 113 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 164 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 165 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 216 >gi|293408196|ref|ZP_06652036.1| hypothetical protein ECEG_03130 [Escherichia coli B354] gi|291472447|gb|EFF14929.1| hypothetical protein ECEG_03130 [Escherichia coli B354] Length = 400 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P G +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233 Query: 178 VMRL 181 +MR Sbjct: 234 LMRR 237 >gi|222447018|pdb|3C1Q|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae gi|222447019|pdb|3C1Q|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains Of Epsf From The Type 2 Secretion System Of Vibrio Cholerae Length = 123 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G P+ + + + QS P +R+ V G +LS+S+ Sbjct: 21 LATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 F + ++ + G+L L L+ +R+ ++K+Q S Sbjct: 77 ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117 >gi|229514051|ref|ZP_04403513.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21] gi|254291779|ref|ZP_04962564.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226] gi|150422291|gb|EDN14253.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226] gi|229349232|gb|EEO14189.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21] Length = 408 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|153802801|ref|ZP_01957387.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3] gi|124121666|gb|EAY40409.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3] Length = 408 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|153214072|ref|ZP_01949206.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587] gi|153830647|ref|ZP_01983314.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39] gi|229527031|ref|ZP_04416426.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)] gi|124115498|gb|EAY34318.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587] gi|148873856|gb|EDL71991.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39] gi|229335428|gb|EEO00910.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)] Length = 408 Score = 42.8 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 403 Score = 42.8 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 16/148 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67 A F F +D AG+ + A+ ++ Q+ +P +R R V E G+SLS Sbjct: 67 LALFCRQFATMID-------AGVSLVRALDILGDQTGNPKLREAIRSVQEHVEGGVSLSN 119 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ P F +++ + GG L E L ++ MK ++ + Sbjct: 120 ALEEEDHVFP----RLFISMVE-AGETGGILDEVLLEMADHFEKENEMKQQI---TSALA 171 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A I V LV P ++++ Sbjct: 172 YPAVITLVAVGVVVFLVTVILPTFVDIF 199 >gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424] gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424] Length = 404 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ K A F F + AG+ + + V+ QS + ++ + Sbjct: 58 LSNITVKDKAVFSRQF-------SVMINAGVAIVRCLGVLSDQSGNKKLKKALASISADV 110 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS+++ + + + GG L E L L+++L D ++ ++ Sbjct: 111 QQGSPLSDAMGKHPDC-----FDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQI 165 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ A + + F ++ + L Sbjct: 166 KSAMAYPVAVGMLAVIVFFAMTIFLIPVFAKIFQDL 201 >gi|70730126|ref|YP_259865.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5] gi|68344425|gb|AAY92031.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5] Length = 403 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 6/127 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ V Q+ + V G+ L+E+++ R Sbjct: 69 ATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALA--ARPRD 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E+ + + G+L++ + L+ + +R ++ K+ + + + Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIGIV 183 Query: 138 FCVSTLV 144 + + V Sbjct: 184 IFLLSYV 190 >gi|254226637|ref|ZP_04920217.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51] gi|297581049|ref|ZP_06942974.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385] gi|125620856|gb|EAZ49210.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51] gi|297534875|gb|EFH73711.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385] Length = 408 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|15642422|ref|NP_232055.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587632|ref|ZP_01677396.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80] gi|121729936|ref|ZP_01682358.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52] gi|147673666|ref|YP_001217925.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|153818412|ref|ZP_01971079.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457] gi|153827241|ref|ZP_01979908.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2] gi|227082546|ref|YP_002811097.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2] gi|229507515|ref|ZP_04397020.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286] gi|229512289|ref|ZP_04401768.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33] gi|229519425|ref|ZP_04408868.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9] gi|229607021|ref|YP_002877669.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236] gi|254849548|ref|ZP_05238898.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10] gi|255746904|ref|ZP_05420849.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101] gi|262161553|ref|ZP_06030663.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1] gi|262168404|ref|ZP_06036101.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27] gi|262190164|ref|ZP_06048446.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93] gi|298500217|ref|ZP_07010022.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757] gi|20178038|sp|Q9X4G9|PILC_VIBCH RecName: Full=Type IV pilin assembly protein pilC; AltName: Full=Type IV-A pilus assembly protein pilC gi|4455003|gb|AAD21031.1| type IV-A pilus assembly protein PilC [Vibrio cholerae] gi|9657000|gb|AAF95568.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548142|gb|EAX58215.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80] gi|121628324|gb|EAX60831.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52] gi|126511045|gb|EAZ73639.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457] gi|146315549|gb|ABQ20088.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|149738855|gb|EDM53191.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2] gi|227010434|gb|ACP06646.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2] gi|227014317|gb|ACP10527.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395] gi|229344114|gb|EEO09089.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9] gi|229352254|gb|EEO17195.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33] gi|229355020|gb|EEO19941.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286] gi|229369676|gb|ACQ60099.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236] gi|254845253|gb|EET23667.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10] gi|255735306|gb|EET90706.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101] gi|262023296|gb|EEY42000.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27] gi|262028864|gb|EEY47518.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1] gi|262033955|gb|EEY52413.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93] gi|297540910|gb|EFH76964.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757] Length = 408 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|301026087|ref|ZP_07189562.1| type II secretion system F domain protein [Escherichia coli MS 69-1] gi|300395658|gb|EFJ79196.1| type II secretion system F domain protein [Escherichia coli MS 69-1] Length = 400 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P G +L+ + + Sbjct: 174 IIVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233 Query: 178 VMRL 181 ++R Sbjct: 234 LIRR 237 >gi|326318665|ref|YP_004236337.1| general secretion pathway protein F [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375501|gb|ADX47770.1| general secretion pathway protein F [Acidovorax avenae subsp. avenae ATCC 19860] Length = 411 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + +S D + + + G + + +++ R E Sbjct: 81 LAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR-----EF 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L +R+ +KAK+ S+ I + + Sbjct: 136 SSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAIVIVLFLV 195 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V P V R L VA Sbjct: 196 GYVV---PQVAAVFAGSKRALPFLTVAM 220 >gi|120612613|ref|YP_972291.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1] gi|120591077|gb|ABM34517.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1] Length = 411 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V +GLP+ A+ + +S D + + + G + + +++ R E Sbjct: 81 LAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR-----EF 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ L +R+ +KAK+ S+ I + + Sbjct: 136 SSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAIVIVLFLV 195 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169 V P V R L VA Sbjct: 196 GYVV---PQVAAVFAGSKRALPFLTVAM 220 >gi|19705384|ref|NP_602879.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713371|gb|AAL94178.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 346 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + +++ + G S+ ES + + Sbjct: 15 LSIMLKSGLTFTTAIEIILREEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + II V+ Sbjct: 75 YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVIISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|330890704|gb|EGH23365.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. mori str. 301020] Length = 406 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A +I + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + +V N L V A ++ + Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226 >gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] Length = 402 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 22/158 (13%) Query: 1 MKHLIKKRTAKFLDDFP------------NALDIIVRSVRAGLPVSDAVAVIVGQSSDP- 47 ++ K+ KF P + + ++AG+P+ DA+ + Sbjct: 239 LEKRKKREFDKFKLRLPVFGKLFLYIELNRFFETLSSLLKAGIPIVDAMISATHTVKNEY 298 Query: 48 VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 ++ + G SL+ S+ ++E+ + + + G L+E L+ +S+ Sbjct: 299 LKERLLLINNELKKGKSLATLFSK-----EIKELPTVALQLIKAGEQSGRLAELLSKVSK 353 Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 LR+ + ++ ++ + I+ + V +V+ Sbjct: 354 FLRN----EVEIYTKNLTSMLEPAIMIIIGLIVGFIVF 387 Score = 41.6 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 9/136 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71 + + + + AG+P+ +A+ + + + F +++ G SLSES+ Sbjct: 63 VQELAVFFRTLATLLDAGIPLIEAIESLSENFKEDRKKIFMTKIVNNLREGKSLSESLKI 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + GG L ++L ++ IL R+ +K+ + + Sbjct: 123 AGIKDP------VIVSFVSSGEKGGTLVQSLEIIASILEKREELKSTIINALIYPVV--L 174 Query: 132 IIGSLPFCVSTLVYFT 147 ++ ++ V ++ Sbjct: 175 LVVAIGVVVFMMLSVI 190 >gi|148651967|ref|YP_001279060.1| type II secretion system protein [Psychrobacter sp. PRwf-1] gi|148571051|gb|ABQ93110.1| type II secretion system protein [Psychrobacter sp. PRwf-1] Length = 410 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 7/151 (4%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64 +R K D + + +AG+P+ A +I P ++ RV + G+S Sbjct: 62 RRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQALDKPSMKQLVLRVKQQLETGMS 121 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +S+ ++ + ++ G L L ++ + + +K K++ Sbjct: 122 LEDSL-----RAHPKQFDDLFCALVSAAEHSGTLDTLLERIADYKENNELLKIKLKKAIK 176 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + + + V + + Sbjct: 177 YPLAVMLVAMIVSIILLLKVVPVFADLYDSM 207 >gi|283782634|ref|YP_003373388.1| hypothetical protein HMPREF0424_0121 [Gardnerella vaginalis 409-05] gi|283441234|gb|ADB13700.1| conserved domain protein [Gardnerella vaginalis 409-05] Length = 191 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 37/96 (38%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + LG ++E + + +K + ++ KA+ ++ +LP Sbjct: 84 LSNTLGCVMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +LI G +LL + +G+ + M+ Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179 >gi|167625754|ref|YP_001676048.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167355776|gb|ABZ78389.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 406 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + G LS ++++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQHPDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F +++ V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27] gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27] Length = 398 Score = 42.4 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F + AGLP+ A+ ++ QS + + + R+V+ G ++++++ Sbjct: 64 FTRQF-------STMINAGLPLVQALDILAKQSENKALSAVVRQVVFDVESGNTVADAMR 116 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + S T + + GG L L L+ + + KV+ Sbjct: 117 KHPK-----AFSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKG---AMIYPT 168 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ CV L++ P + N+ Sbjct: 169 VIMCVAGLCVVILLWKVIPVFANMF 193 >gi|296118088|ref|ZP_06836670.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] gi|295968974|gb|EFG82217.1| membrane protein [Corynebacterium ammoniagenes DSM 20306] Length = 264 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 12/190 (6%) Query: 1 MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 + + KR + D L + +RAG A+ + + Sbjct: 75 LTQMHDKRVNLRAEDAIAQLLGTMTADLRAGATFPAALKRGADELAVSATVSMDIKAAIA 134 Query: 60 HL------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G S+S +S +++ + S+ + G LS + RK Sbjct: 135 TAAVIAHRGGSISTVLS-----TSHPQLTNLGALCSLNEKHGIPLSNVFEQAHNQIESRK 189 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +A +A +A+A ++ LP + L G +LL V A Sbjct: 190 RHRAATKASLQGPQATAIVLTLLPLAGIFMGTIMGANPAGFLFGGGLGGLLLVVGVALAC 249 Query: 174 IGIMVMRLMI 183 G + R++I Sbjct: 250 AGFIWSRMLI 259 >gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256] gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256] Length = 413 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 18/192 (9%) Query: 1 MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 +K K+R + F ++AGLP+ A ++ S+P +E + Sbjct: 62 VKATKKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + ++ + P + F + + GG L L L+ + + Sbjct: 112 LMQVRADVEQGSALGKSFAKYP-KYFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAI 170 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFML 173 K KV+ + + +L F + V + + G +++ ++ F+ Sbjct: 171 KKKVKTALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTKIVMDISKIFVE 230 Query: 174 IGIMVMRLMINF 185 G +++ ++I Sbjct: 231 YGWLMIVIVIAI 242 >gi|134298674|ref|YP_001112170.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1] gi|134051374|gb|ABO49345.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1] Length = 290 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 1/140 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K K + N + + V GL + + + S R ++ LG Sbjct: 135 AQKARDKINTELINLIYSMDLGVSNGLD-EKLLIQWAAEGKGLLASMLRESLKEVDLGGE 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 R+ + + +I + G ++S++L +L+R R R++ + Sbjct: 194 EYLIFYRLAEDYNVPDAEEVGMLIKHAEKNGVDISQSLYDLARDFRYRRDSDLDKNIGKV 253 Query: 125 EAKASAWIIGSLPFCVSTLV 144 + +++ + L+ Sbjct: 254 KLTIGVYVVLAYMVMTFALI 273 >gi|90416350|ref|ZP_01224282.1| pilin secretion/fimbrial assembly system protein, PilC [marine gamma proteobacterium HTCC2207] gi|90332075|gb|EAS47289.1| pilin secretion/fimbrial assembly system protein, PilC [marine gamma proteobacterium HTCC2207] Length = 404 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +P ++ + G S ++ R RY Sbjct: 74 LATMMKAGVPLVQSFDIVADGFDNPTMQALIHQIRDDVAAGGSFPNALRRSPRYFD---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ + G L L ++ + +KAK++ A + + + Sbjct: 130 DLFCSLVD-SGETAGALETMLDRVATYKEKTEQLKAKIKKALTYPIAVLVVAMVVTAILL 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V + D L + + M+ ++ Sbjct: 189 IKVVPVFAETFSSFGADLPAFTLFVLGLSEMMQEYWLI 226 >gi|315107453|gb|EFT79429.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA1] Length = 300 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78 +D++ + A A+ S PV + R +E L S + + + L Sbjct: 164 VDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERSRLEQQSPWAGLDELSDELDL 223 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E++ V+ + Q G +L+ AL +RD + KV+A + + W++ +P Sbjct: 224 PELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMV--IPV 280 Query: 139 CVSTLVYFTSP 149 V LV T P Sbjct: 281 LVLGLVLITPP 291 >gi|89075292|ref|ZP_01161719.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34] gi|89048973|gb|EAR54541.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34] Length = 408 Score = 42.4 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 12/149 (8%) Query: 12 FLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 F P L I R + +AG+P+ A + +S P+ + +E L L+ Sbjct: 60 FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPL---LKTTLEALTLDLTNG 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S ++ P F ++I V + G L + L L+ N + +++ Sbjct: 117 RALSVAMQQHPRVFSRLFISLIHV-GENTGRLDQVLLQLANYYEQEVNTRRQIK---SAM 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ ++ + L P + ++ Sbjct: 173 RYPTFVLTAIVIAMGILNTKVIPQFASMF 201 >gi|182412504|ref|YP_001817570.1| type II secretion system protein [Opitutus terrae PB90-1] gi|177839718|gb|ACB73970.1| type II secretion system protein [Opitutus terrae PB90-1] Length = 407 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AGLP+ + + Q+ DP FR +I +S S S V+ P Sbjct: 72 QQLASLLIAGLPLVQCLEALQDQTEDP---CFRIIIRDVRADISSGNSFSSSVKKFPNAF 128 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S F +++ + G L+E L ++ + KV+ +IG V Sbjct: 129 NSLFVSMVE-AGEASGGLAEILGKVASYFESTVRLTKKVK---SAMTYPIAVIGLAVALV 184 Query: 141 STLVYFTSPGYMNVL 155 + L+ F P + ++ Sbjct: 185 NVLLIFVIPVFASMF 199 >gi|217971718|ref|YP_002356469.1| type II secretion system protein [Shewanella baltica OS223] gi|217496853|gb|ACK45046.1| type II secretion system protein [Shewanella baltica OS223] Length = 406 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ S+ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLISIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|291286430|ref|YP_003503246.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883590|gb|ADD67290.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 397 Score = 42.4 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 P+ + + +G+P++ A+ V D ++ + E G S+++ Sbjct: 61 KALPDIFFQLSILISSGIPLTRALKVTADTVKDTKMKRSLLDMEEKVSSGKRFSDAMKPY 120 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + +I ++G LS L ++SR +R+ K+ + + + Sbjct: 121 EKIY----TELYIHLIRTSEKVG-RLSSVLLDISRFEEERRKTGEKI---TSAMMYPSVV 172 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + V ++ F P ++ Sbjct: 173 MMLGLGVVGFMLTFVVPKLESIF 195 >gi|328474168|gb|EGF44973.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 10329] Length = 407 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 76 ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNL+E L+ + ++AKV A I ++ V+ Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182 Query: 142 TLVYFT 147 V F Sbjct: 183 LGVSFI 188 >gi|229521254|ref|ZP_04410674.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80] gi|229341786|gb|EEO06788.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80] Length = 408 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|260774761|ref|ZP_05883664.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC BAA-450] gi|260609323|gb|EEX35475.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC BAA-450] Length = 407 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 76 LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHIFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++S + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 132 DLFRSMVS-AGEKSGHLDAVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 186 Query: 142 TLVY 145 + Sbjct: 187 AFLL 190 >gi|319761504|ref|YP_004125441.1| general secretion pathway protein f [Alicycliphilus denitrificans BC] gi|330823373|ref|YP_004386676.1| general secretion pathway protein F [Alicycliphilus denitrificans K601] gi|317116065|gb|ADU98553.1| general secretion pathway protein F [Alicycliphilus denitrificans BC] gi|329308745|gb|AEB83160.1| general secretion pathway protein F [Alicycliphilus denitrificans K601] Length = 409 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V AGLP+ A+ + ++ D + + + G + + ++++ R E Sbjct: 79 LAGLVGAGLPLERALTALADEADDERQRHLVAALRAEVNAGSTFARALAQHPR-----EF 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L + L +L+ L R+ ++AK+ A A + V Sbjct: 134 SDIYCAVIGAGEGSGGLGQVLESLADDLEARQQLRAKLIG---AALYPAIVTLVAIVIVL 190 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P +V R LL V Sbjct: 191 FLVGYVVPQVASVFAGSKRALPLLTVLML 219 >gi|152999038|ref|YP_001364719.1| type II secretion system protein [Shewanella baltica OS185] gi|160873631|ref|YP_001552947.1| type II secretion system protein [Shewanella baltica OS195] gi|304411543|ref|ZP_07393156.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|307306681|ref|ZP_07586423.1| Type II secretion system F domain protein [Shewanella baltica BA175] gi|151363656|gb|ABS06656.1| type II secretion system protein [Shewanella baltica OS185] gi|160859153|gb|ABX47687.1| type II secretion system protein [Shewanella baltica OS195] gi|304350070|gb|EFM14475.1| Type II secretion system F domain protein [Shewanella baltica OS183] gi|306910649|gb|EFN41078.1| Type II secretion system F domain protein [Shewanella baltica BA175] gi|315265860|gb|ADT92713.1| Type II secretion system F domain [Shewanella baltica OS678] Length = 406 Score = 42.4 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + + ++ + E G LS S+++ Sbjct: 73 MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ V + G L +A LS + + + +++ + +++ S+ + Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLISIALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 185 ILNIMVIPKFAEMF 198 >gi|207724220|ref|YP_002254617.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] gi|206589433|emb|CAQ36394.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] Length = 399 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K R K + +RAGL VS+A+ + + P +RR+ + GL Sbjct: 55 LKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 112 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 113 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 164 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 165 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 216 >gi|149177766|ref|ZP_01856366.1| probable type IV pilus assembly protein TapC [Planctomyces maris DSM 8797] gi|148843416|gb|EDL57779.1| probable type IV pilus assembly protein TapC [Planctomyces maris DSM 8797] Length = 370 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ L + + +G P+ A + + +P + + F ++E H G S+ Sbjct: 237 PDVLRFLHITTESGRPLLGAFETLSHTTKNPYLSARFNAILEDVHKGNDCWTSLHDYSLL 296 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + + +Q GNLS AL +++ + R N + + +E + Sbjct: 297 TPSE------VRLLQSAQRAGNLSWALKAIAKGIERRINYRLALIREYLEPAFILSVGCL 350 Query: 136 LPFCVSTLVY 145 + V L Sbjct: 351 VGIFVIGLFL 360 >gi|92114297|ref|YP_574225.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91797387|gb|ABE59526.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 410 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 8/126 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG+P+ A +V+ P ++ G S SE++++ ++ Sbjct: 80 MATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALAQHPQHFD---- 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G+L L ++ +++A+V+ +A ++ + Sbjct: 136 RMFVNMVE-AGEQSGSLDRMLERVASYKEKIDSLRARVRKALYYP--AAVVLVGMGVTAL 192 Query: 142 TLVYFT 147 LV Sbjct: 193 LLVKVV 198 >gi|299065626|emb|CBJ36798.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CMR15] Length = 421 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 5/169 (2%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K R K + D + ++AG+P+ +V +I ++P F +++ Sbjct: 69 KRRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANP---NFTQLLTEIR 125 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + S+++ R P Q + + GG L L LS + +KA+++ Sbjct: 126 VDIESGSSMAQAFRRHP-QHFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + + + + + + V G L+ + Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGI 233 >gi|17229934|ref|NP_486482.1| pilin biogenesis protein [Nostoc sp. PCC 7120] gi|17131534|dbj|BAB74141.1| pilin biogenesis protein [Nostoc sp. PCC 7120] Length = 407 Score = 42.4 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+ + + V+ Q ++ ++ + G++LS+++ Sbjct: 76 LATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAM-----RKHPGCF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++GG L E L L+++L D ++ ++++ + + ++ Sbjct: 131 DGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSALAYPVVVGILATGIFVGMT 190 Query: 142 TLVYFTSPGYMNVL 155 + L Sbjct: 191 VFLIPIFAKIFVEL 204 >gi|229524410|ref|ZP_04413815.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis VL426] gi|229337991|gb|EEO03008.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis VL426] Length = 408 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|239996354|ref|ZP_04716878.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Alteromonas macleodii ATCC 27126] Length = 411 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 55/162 (33%), Gaps = 6/162 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A+ + S + + + + G SLS S+++ + Sbjct: 79 MYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSSMAKYEKV-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + V + G L + L+ + + ++++ + F ++ Sbjct: 134 TRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIKSALRYPTFVLIALAIAMFILN 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 V + + + + + + +++ Sbjct: 194 LFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIIV 235 >gi|160896747|ref|YP_001562329.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160362331|gb|ABX33944.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 405 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V+V S +++ + V+++ G+ LS+++ + Sbjct: 75 LAIMMRAGLSLDNALKVLVEMSHKVQMQAMLQSVLDSVKAGMPLSQALGKHHDLFG---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ ++ + G +S L L + ++ ++ V + ++ A ++G + Sbjct: 131 DFYINMVR-SGEASGQMSGVLNRLVEHMARQRALRDSVVSATI---YPAILLGVAVLSLV 186 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F P L ND Sbjct: 187 AMLGFVVPQ-FEQLFND 202 >gi|310823682|ref|YP_003956040.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] gi|309396754|gb|ADO74213.1| Type IV pilin [Stigmatella aurantiaca DW4/3-1] Length = 413 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 21/140 (15%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSE 67 F F +D AGLP+ + ++ Q +P F++V+ G + ++ Sbjct: 79 FTRQFATMID-------AGLPLVQCLDILGSQMENPA---FKKVVFAIKGKVEQGSTFAD 128 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + F + ++GG L L L+ + +K KV+ S Sbjct: 129 ALKDHPKVFD----ELFVQ-LCAAGEVGGILDTILNRLAAYREKAEKLKGKVK--SAMTY 181 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 S I ++ L+ T Sbjct: 182 PSVVICVAIGVTALLLLKVT 201 >gi|262166465|ref|ZP_06034202.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223] gi|262026181|gb|EEY44849.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223] Length = 408 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|124027108|ref|YP_001012428.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456] gi|123977802|gb|ABM80083.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456] Length = 297 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 F + L I+ + A +DA+ P S R+ L + Sbjct: 86 LRMFEEQLIEFLLILPGMLAASPSTADALLRTARMLRPPFNSYVERMARIYASTGDLERA 145 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + P + V + + ++ GG++ L+ ++ + + EA+ Sbjct: 146 FNEAFTAAPSK-VRILARSVVTAAKTGGHIHIVLSKVAAYADASRRL-----VGLAEARL 199 Query: 129 SAWIIGS 135 S + + + Sbjct: 200 SEYKMIA 206 >gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114] gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114] Length = 413 Score = 42.4 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R + +D + ++AGLP+ A ++ S+P +E ++ Sbjct: 62 VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + P + F + + GG L L L+ + +K KV+ Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + +L F + V + Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANM 210 >gi|85712757|ref|ZP_01043801.1| Type II secretory pathway [Idiomarina baltica OS145] gi|85693397|gb|EAQ31351.1| Type II secretory pathway [Idiomarina baltica OS145] Length = 417 Score = 42.4 bits (99), Expect = 0.033, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 9/144 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 LD + AG+P+ A+ + + + + R V G +LS +++ Sbjct: 74 LDQLIIFCRQMYSLTNAGIPILRAIEGLADTTQNKRLERALRDVHSQLERGRTLSAGMAQ 133 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + S I + G L E+ L+ L ++ + +++ + + Sbjct: 134 HPKV-----FSRLIVAIVHVGENTGQLEESFEQLALYLEKEQDTRKRIK---AATRYPTF 185 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 ++ +L + L F P + N+ Sbjct: 186 VMIALVVALFVLNIFVIPTFANMF 209 >gi|228969172|ref|ZP_04130068.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790518|gb|EEM38223.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 225 Score = 42.4 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 1/116 (0%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 M KKR + + L+ + ++ A S A+ I+ P++ + + Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S+ ES + ++ + + F ++ + S+ G + L ++ + +K++ Sbjct: 170 LEGTSIKESFAPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKDI 225 >gi|15606135|ref|NP_213512.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5] gi|2983312|gb|AAC06902.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5] Length = 408 Score = 42.4 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+ + +A+ ++ Q + +R + G S+ +++++ P Sbjct: 76 LSVLVGAGVSIVEAIELVAEQMQNKKLRKALMETAKDIEEGSSIHDALAKRKNIFP---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ V + G L L + +K K+++ S ++ + + Sbjct: 132 EFLINLVEVGEETG-ELDLVLRRAAEYYEKIAFIKGKIKSASFYPTFVMIFATAIVWFIL 190 Query: 142 TLVYFTSPGYMNVL 155 T V L Sbjct: 191 TFVVPKFAEIYKSL 204 >gi|28899299|ref|NP_798904.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD 2210633] gi|260363755|ref|ZP_05776530.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030] gi|260879009|ref|ZP_05891364.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AN-5034] gi|260896384|ref|ZP_05904880.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus Peru-466] gi|260900209|ref|ZP_05908604.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ4037] gi|28807523|dbj|BAC60788.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD 2210633] gi|308089112|gb|EFO38807.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus Peru-466] gi|308089566|gb|EFO39261.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AN-5034] gi|308110214|gb|EFO47754.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ4037] gi|308111151|gb|EFO48691.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030] Length = 407 Score = 42.4 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 76 ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNL+E L+ + ++AKV A I ++ V+ Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182 Query: 142 TLVYFT 147 V F Sbjct: 183 LGVSFI 188 >gi|238062253|ref|ZP_04606962.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149] gi|237884064|gb|EEP72892.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149] Length = 312 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 12/165 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMP 77 ALDI AG V+ + G+ R G S + + ++ R Sbjct: 150 ALDIGRSGASAGPDVASTAPGLPGEDPPRSARGIGRQPVGLAAGASDAPDRLRQLAR--- 206 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G L+E L + R A A + A+A+AW++ +LP Sbjct: 207 --------AAVRLADRTGAPLAELLERIEADARAADRGLAAAAAQAAGARATAWLLAALP 258 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 L Y + VL++ P G A +G++ + Sbjct: 259 LGGIGLGYGVGVDPVAVLLHTPVGGGCAVAAVVLQFVGLLWTERL 303 >gi|218687980|ref|YP_002396192.1| type IV pilin biogenesis protein [Escherichia coli ED1a] gi|218425544|emb|CAR06327.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli ED1a] Length = 400 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLIDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 406 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 35/190 (18%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS---RMVR 74 + I V +GL + A+ V+ Q + P R ++ G LS+++ M R Sbjct: 71 FCEQIGTMVGSGLNIEQALQVVSRQKGNRPSARMARHLLPRIQAGGPLSDALDIEVGMPR 130 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Y+P + ++ GG L+E L R L+ + + +A++ ++ Sbjct: 131 YLPS---------MIRAAESGGRLAEGLETAGRYLQRQASTRAEIANALT---YPVIVLV 178 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHMLLGVAAAFMLIG 175 ++ + ++ PG+ + + L A + IG Sbjct: 179 TVMIALLIVLTVVIPGFEPIFAGEEHRLPGMTRFVLWLSDLAVNHAITSLLWMGAILAIG 238 Query: 176 IMVMRLMINF 185 ++ R + F Sbjct: 239 FLLYRRSVRF 248 >gi|17547545|ref|NP_520947.1| fimbrial assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17429849|emb|CAD16533.1| probable fimbrial assembly transmembrane protein [Ralstonia solanacearum GMI1000] Length = 421 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 10/181 (5%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 K R K + D + ++AG+P+ +V +I ++P F +++ Sbjct: 69 KRRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANP---NFTQLLTEIR 125 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + S+++ R P Q + + GG L L LS + +KA+++ Sbjct: 126 VDIESGSSMAQAFRRHP-QHFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ L+ F P + NV + G L M I ++ Sbjct: 185 ---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFAS--FGATLPAPTLVVMGISDFFVK 239 Query: 181 L 181 Sbjct: 240 W 240 >gi|327484917|gb|AEA79324.1| Type IV fimbrial assembly protein PilC [Vibrio cholerae LMA3894-4] Length = 408 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILTQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|296328361|ref|ZP_06870888.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154540|gb|EFG95330.1| general secretion pathway protein F [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 346 Score = 42.0 bits (98), Expect = 0.034, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + + + +++ + G S+ ES + + Sbjct: 15 LAIMLKSGLTFTTAIEIILREEKEKNFKEVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans Sphe3] gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans Sphe3] Length = 204 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ + AG + A+ ++ G +SD R V+ +G + +P Sbjct: 69 MLELVAAMLDAGSSIGRALELVSGSASDRYCRALRPVVSALAIGADWETAWRSSAVRLP- 127 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137 EV + + G S L + LR + A+ +A S+ K + + SLP Sbjct: 128 -EVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLCSLP 186 Query: 138 FCVSTLV 144 + V Sbjct: 187 AFICLGV 193 >gi|167584996|ref|ZP_02377384.1| general secretion pathway protein F [Burkholderia ubonensis Bu] Length = 405 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ +++ V+ Q+ D +R + Sbjct: 61 RKLSQREQAILTRQL-------ASLLIAGLPLDESLGVLTEQAERDYIRELMAAIRAEVL 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL+ ++++ R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSLANALAQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + V+ L+ + P +NV + + +L V M + V Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSDFV 221 >gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703] gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703] Length = 413 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R + +D + ++AGLP+ A ++ S+P +E ++ Sbjct: 62 VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + ++ + P + F + + GG L L L+ + +K KV+ Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + +L F + V + Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANM 210 >gi|153838722|ref|ZP_01991389.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ3810] gi|149747882|gb|EDM58760.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus AQ3810] Length = 407 Score = 42.0 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 76 ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNL+E L+ + ++AKV A I ++ V+ Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182 Query: 142 TLVYFT 147 V F Sbjct: 183 LGVSFI 188 >gi|28868145|ref|NP_790764.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato str. DC3000] gi|28851382|gb|AAO54459.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato str. DC3000] Length = 405 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ R Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRTLVDSLKQEVSAGNSFATALRRKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + ++ + A M+IG+ Sbjct: 187 ILLIKVVPQFQSIFASFGADLP----AFTLMVIGL 217 >gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium 2_1_46FAA] Length = 403 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 11/146 (7%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-------VIETQHLGLSLSESI 69 P + + + +G+ + +A I+ + + E R + G++ SES Sbjct: 259 PEIISQLSLLIGSGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMTESESY 318 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKA 128 R + + T +S + G L+E L ++ + + +AK K Sbjct: 319 ERFGKRCGISSYMKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEKAGTKL 378 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 ++ + LV P ++++ Sbjct: 379 ---LLPMSMMLIVVLVIVIVPAFLSI 401 >gi|262404737|ref|ZP_06081292.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586] gi|262349769|gb|EEY98907.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586] Length = 408 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi DSM 13479] gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi DSM 13479] Length = 415 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 9/141 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + + + +G+P++ A+ +I V +S ++ + ++ G+ LS+++ Sbjct: 79 LARFMSEMAVMLNSGIPLAQALNLISVRESRKDLKEIYGKLYHMILHGMDLSQAME---- 134 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 M + + GG+L++A ++ + KV A++ Sbjct: 135 -MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFEKEDETRKKV---GTAMIYPAFLFL 190 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 ++ V L P + + Sbjct: 191 TVAVVVILLFTTVLPSFFELF 211 >gi|116619189|ref|YP_821345.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116222351|gb|ABJ81060.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 402 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 14/145 (9%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F V +RAGLP+ A+ ++ + +DP + + V + G LS++ Sbjct: 69 FNQQF-------VTLIRAGLPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAF- 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R+ P + T + + G+L+E L + +K KV M Sbjct: 121 RLQGIFP----KMYVTSVM-AGEKSGSLTEVLDRYVTYQKMSLAVKKKVMVSLMYPAVLI 175 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ L + T V T N + Sbjct: 176 VLVALLMVFLVTYVVPTFANLYNSM 200 >gi|299139220|ref|ZP_07032396.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX8] gi|298598900|gb|EFI55062.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX8] Length = 396 Score = 42.0 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 12/150 (8%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAGLP+ ++ ++ + + +++ V G S+S + Sbjct: 72 IRAGLPILSSLDLLAKRQKEESFQAQLEDVTSRIKTGESISSAFE------AQGSFPLVY 125 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 T + + GNL E L R + K++ A++I + L+ Sbjct: 126 TTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLK---ASLIYPAFLIVMVIGLFIFLIT 182 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 F P + + D G L + + +G Sbjct: 183 FVVPRFAQLY--DQLGTKLPALTLFMLALG 210 >gi|323494569|ref|ZP_08099673.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546] gi|323311172|gb|EGA64332.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546] Length = 408 Score = 42.0 bits (98), Expect = 0.038, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 77 LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADYPHVFD---- 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 F +++S + G+L L L+ +R+ M++K+ QAL + +G + F + Sbjct: 133 DLFRSMVS-AGEKSGHLDSVLERLADYAENRQKMRSKLQQALIYPVVLVVFAVGIVAFLL 191 Query: 141 STLV 144 + +V Sbjct: 192 AAVV 195 >gi|266619933|ref|ZP_06112868.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288868471|gb|EFD00770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 310 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 77/179 (43%), Gaps = 6/179 (3%) Query: 9 TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66 ++ A+ II S +R + ++ + ++PV++ F + L + + Sbjct: 126 KKHLNEELETAISIITTSYLRT-EDIIRSIQENLPYINEPVKANFEAFVYEARLINANTT 184 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +I+ + +P + + ++ +Q Q ++ L +++ D + ++++++A+ Sbjct: 185 SAINSLKMKIPNRVFHEWCNIL-IQCQSDRSMKNTLPTIAQKFSDVRIVQSELEAMMQGP 243 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN-VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + A + L L+YF + + + +L P G + L + A +L + + + Sbjct: 244 RREAITMMFLVIANIPLLYFLNKDWFHTLLFTTP-GKIALAICGAIILFSLTQIMKLSK 301 >gi|119486410|ref|ZP_01620468.1| type II secretion system protein [Lyngbya sp. PCC 8106] gi|119456312|gb|EAW37443.1| type II secretion system protein [Lyngbya sp. PCC 8106] Length = 376 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AG+ ++ ++V+ Q + + +R + T + ++S +R P + Sbjct: 49 AGIAMARCLSVLSEQCDN---ARLKRALTTIRADVEEGNALSESMRKFP-DVFDMLFISM 104 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 ++GG L E L L+ ++ ++++++ K +I ++ F ++ + T Sbjct: 105 VSAGEVGGVLDEVLERLAVMMEKNHKTESEIKSAMSYPKTVLFIALAVFFAMTIFLLPTF 164 Query: 149 PGYMN 153 G Sbjct: 165 AGIFE 169 >gi|302189197|ref|ZP_07265870.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. syringae 642] Length = 405 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 11/164 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A +I + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 L+ P + +V N L V A ++ + ++I Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVI 230 >gi|260220289|emb|CBA27679.1| Type IV pilus assembly protein tapC [Curvibacter putative symbiont of Hydra magnipapillata] Length = 405 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ + +P V + G SLS + + PL Sbjct: 75 LATMMKAGVPLLQAFDIVGRGNPNPSVTKLLSDIRSDVETGTSLSAAFRK----YPLY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L + L L+ + + +K+K+++ M + + + + Sbjct: 130 DNLYCNLVEAGESAGILDQLLDRLAVYMEKTEAIKSKIKSALMYPISVLVVAFVVVSVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V + + L +A + + I + Sbjct: 190 IFVIPSFKQVFTSFGGELPAPTLFVIALSEVFIEYWWL 227 >gi|149177813|ref|ZP_01856412.1| general secretion pathway protein F-putative pilus protein [Planctomyces maris DSM 8797] gi|148843303|gb|EDL57667.1| general secretion pathway protein F-putative pilus protein [Planctomyces maris DSM 8797] Length = 345 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 11/164 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + +G+ + + + + D ++ ++ G ++ ++ + Y P Sbjct: 22 LESGVSIVKSFQLAGKKLGDHRLQQSVNDIVMELKSGNDVTSALQKQGNYYP----ELMV 77 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +ISV Q GG L E L L+ + M+ + + + + ++ Sbjct: 78 NMISVAEQSGG-LPEVLKALAEHYDNLVQMRKNFLRMIAWPVFQFVVALLVIALMILILG 136 Query: 146 FTSPG--YMNVL---INDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + G ++VL ++ P G M+ L + V+ +++ Sbjct: 137 LIAQGGAAIDVLGLGLSGPSGAMIWLTCTFGSLFALYVLYQILD 180 >gi|254302343|ref|ZP_04969701.1| MTB family outer membrane protein secretion main terminal branch protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322535|gb|EDK87785.1| MTB family outer membrane protein secretion main terminal branch protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 346 Score = 42.0 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + +++ + G S+ ES + + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKDVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|188586347|ref|YP_001917892.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351034|gb|ACB85304.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 403 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 35/195 (17%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 K F F VR G+PV +++ + Q + + VI++ + G SL Sbjct: 65 KELMLFTSQF-------STMVRCGIPVIESLDLQTQQLGNKNLTRGLTIVIKSLNSGKSL 117 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ S P + T + + G L E L L+ + K++ Sbjct: 118 REAFSDASETFP-----WLITEMVGAGEESGRLDEILDRLALHYEQEYTLSQKLK---SA 169 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLG 166 +I V L+ P ++N+ ++ Sbjct: 170 ISYPILLIILAMVVVYILLTVIFPQFINLFEAQGAELPFITRMIFDSGIWMTENFSLIFV 229 Query: 167 VAAAFMLIGIMVMRL 181 +A M + + + R Sbjct: 230 LAILLMFLCVYIFRR 244 >gi|323489975|ref|ZP_08095196.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2] gi|323396271|gb|EGA89096.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2] Length = 403 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 D F L +RAG+ + D+V ++ Q P++ + E G SLS S+++ Sbjct: 61 RDQFIMFLRQFSTLMRAGVTIVDSVHILSQQVESKPLQRALAEIAEELRKGNSLSNSLAK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + +L GN+ E+L +L+ + KV + Sbjct: 121 YPKI-----FEPLTINLVKAGELAGNIDESLDSLATHYDKAYQTRQKVISAMSYP----V 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++G L V + + + + G + L Sbjct: 172 VVGILAIGVVIFLLSSIVPMFADMFSGFGGELPLITQFVM 211 >gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas fluorescens SBW25] gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas fluorescens SBW25] Length = 400 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 11/165 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS+++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L + L LS L + ++ +V + A+++ Sbjct: 123 DQ-----FSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ L+ + P ++ + + G + + + +G + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217 >gi|225420076|ref|ZP_03762379.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme DSM 15981] gi|225041332|gb|EEG51578.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme DSM 15981] Length = 397 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 D P + + AG+PVS A++V + D + R+ ET G +LSE+++ M Sbjct: 60 DAIPPFCRQMSTMLGAGVPVSRALSVCGSSTRDRSLGRILARLNETVQKGRTLSEAMAEM 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P V + +L G+L +A ++ ++ K++ A + Sbjct: 120 NGIFPGLLVHMAAMG-----ELNGSLDRVMAKMADHYSREAKLRKKIR---SAMTYPAIL 171 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + + ++ P + ++L Sbjct: 172 LVVTLAATAFMLTAVLPRFASLLSGTEL 199 >gi|110804168|ref|YP_687688.1| type IV pilin biogenesis protein [Shigella flexneri 5 str. 8401] gi|110613716|gb|ABF02383.1| Protein transport protein hofC [Shigella flexneri 5 str. 8401] Length = 400 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K+ + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|24111551|ref|NP_706061.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 301] gi|30061673|ref|NP_835844.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 2457T] gi|24050311|gb|AAN41768.1| putative integral membrane protein [Shigella flexneri 2a str. 301] gi|30039915|gb|AAP15649.1| putative integral membrane protein [Shigella flexneri 2a str. 2457T] gi|281599468|gb|ADA72452.1| putative integral membrane protein [Shigella flexneri 2002017] gi|313646513|gb|EFS10974.1| bacterial type II secretion system F domain protein [Shigella flexneri 2a str. 2457T] gi|332762106|gb|EGJ92375.1| bacterial type II secretion system protein F domain protein [Shigella flexneri 4343-70] gi|332762314|gb|EGJ92581.1| bacterial type II secretion system protein F domain protein [Shigella flexneri 2747-71] gi|332764951|gb|EGJ95179.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-671] gi|332768894|gb|EGJ99073.1| bacterial type II secretion system F domain protein [Shigella flexneri 2930-71] gi|333009150|gb|EGK28606.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-218] gi|333010600|gb|EGK30033.1| bacterial type II secretion system protein F domain protein [Shigella flexneri VA-6] gi|333022364|gb|EGK41602.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-304] Length = 400 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K+ + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032] gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032] Length = 287 Score = 42.0 bits (98), Expect = 0.040, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 11/144 (7%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64 +F LD++ + A ++ F R+ E + S Sbjct: 144 REEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAICD---GWVFERISEALRMAQMQMHS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120 + + + + + E+ ++ G + E L + + LRD+ +A+ Sbjct: 201 PWDELRDLADRIGIPELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGV 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 ++ + + L F + + Sbjct: 261 TSRLDIPGALLVFVLLGFAIYPFL 284 >gi|191166327|ref|ZP_03028159.1| type IV pilus assembly protein PilC [Escherichia coli B7A] gi|293476765|ref|ZP_06665173.1| protein transporter HofC [Escherichia coli B088] gi|300816142|ref|ZP_07096365.1| type II secretion system F domain protein [Escherichia coli MS 107-1] gi|309796094|ref|ZP_07690506.1| type II secretion system F domain protein [Escherichia coli MS 145-7] gi|190903578|gb|EDV63295.1| type IV pilus assembly protein PilC [Escherichia coli B7A] gi|291321218|gb|EFE60660.1| protein transporter HofC [Escherichia coli B088] gi|300531349|gb|EFK52411.1| type II secretion system F domain protein [Escherichia coli MS 107-1] gi|308120336|gb|EFO57598.1| type II secretion system F domain protein [Escherichia coli MS 145-7] gi|320200377|gb|EFW74963.1| Type IV fimbrial assembly protein PilC [Escherichia coli EC4100B] gi|323171268|gb|EFZ56916.1| bacterial type II secretion system protein F domain protein [Escherichia coli LT-68] Length = 400 Score = 42.0 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTEKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|322371097|ref|ZP_08045649.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] gi|320549087|gb|EFW90749.1| type II secretion system protein [Haladaptatus paucihalophilus DX253] Length = 570 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 10/150 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQH 60 L++ R D +AL ++ R V+ GL V A+ + + F R+ Sbjct: 345 LVRNRVRAVEADLTDALYLVGRRVKEGLAVETAIVAAADEIGGETGAVFERATRIQRQLR 404 Query: 61 LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKN 114 +G+ + +P ++++ + G A+ ++ L D + Sbjct: 405 MGV-RESFLGDYGALSTVPSPRARSAVALLALAADEGRPAGGAVLAMADHLDDLQSVERE 463 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + ++ ++ + +A I G L + + Sbjct: 464 ARRELSQVTETLRHTAAIFGPLVSGATVAL 493 >gi|149190627|ref|ZP_01868895.1| general secretion pathway protein F [Vibrio shilonii AK1] gi|148835510|gb|EDL52479.1| general secretion pathway protein F [Vibrio shilonii AK1] Length = 409 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +RS + G +LS+S++ Sbjct: 78 LSTLVQSGMPLEECLKAVSEQSEKPRIRSMLAAIRSKVTEGYTLSDSLAEYPHIFD---- 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ +++K+Q +A ++ + Sbjct: 134 ELFRSMVA-AGEKSGHLDSILERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVAIV 188 Query: 142 TLVY 145 + Sbjct: 189 AFLL 192 >gi|148656328|ref|YP_001276533.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1] gi|148568438|gb|ABQ90583.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1] Length = 316 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ A+ P + + VRAG + A+ ++ P+++E+ +E LG Sbjct: 124 QRYIARIDAALPAFVGRLEAQVRAGSGLQPAIEKVIADMPASPLKAEWSWFLE--RLGQP 181 Query: 65 L--------SESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNM 115 + + + + P + + F + + + + L + + ++ Sbjct: 182 IANGFLATAATVCAALRAQTPSRRHATFLSHLEIAIEQPHAALVQRIRAAYEAMQASDRR 241 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAAAFM 172 + + + + + + + ++ ++ G + +L + + Sbjct: 242 ASMLATELSQMRNTGIALFLINVGITLYLFVVQNERFLTAYRSEPGLIVGAVLALVVSLP 301 Query: 173 LIGIMVM 179 L+G ++ Sbjct: 302 LVGGYLL 308 >gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str. Bath] gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str. Bath] Length = 364 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 11/157 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHL 61 L ++R ++ ++AGLP+ A+ V+ + + V RVIE Sbjct: 14 LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRALFVLEDLTREDVALNGMIGRVIELVKG 73 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G LS ++ R S F + + GG L + L LS L K ++ V Sbjct: 74 GSQLSAALER-----QEGVFSRFYLNLIRAGEAGGALEDVLERLSDYLERSKELRDTV-- 126 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 S A ++ + L+ F P + Sbjct: 127 -STAMIYPAILLTMSVGSLLLLLTFVVPQ-FEEMFET 161 >gi|83943491|ref|ZP_00955950.1| general secretion pathway protein F [Sulfitobacter sp. EE-36] gi|83845723|gb|EAP83601.1| general secretion pathway protein F [Sulfitobacter sp. EE-36] Length = 405 Score = 42.0 bits (98), Expect = 0.042, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 26/184 (14%) Query: 19 ALDIIVRSVR----AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 AL ++ R + +G+ V A+ + Q + P V S + + G S ++++ Sbjct: 67 ALTLLTRQLATLIGSGIGVEQALKTVADQQNKPAVTSLLLNLRASVLDGRSFAQALGEYP 126 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + S + G L + + +LS + R + VQ + A + Sbjct: 127 HVFG--DFYRASVA---AGETSGQLGQVMEHLSGFVETRAKNRQTVQLALLYPAILAVVS 181 Query: 134 GSLPFCVSTLV------YFTSPGYMNVLIN----------DPRGHMLLGVAAAFMLIGIM 177 ++ + T V FTS G + + G +LGV AA +L G Sbjct: 182 LAVIVALLTFVVPDIVRVFTSRGAELPFLTRSLITVSDFINAWGIAMLGVLAAVILGGAS 241 Query: 178 VMRL 181 ++R Sbjct: 242 LLRQ 245 >gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral taxon 078 str. F0262] gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral taxon 078 str. F0262] Length = 483 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 20/128 (15%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-------QSSDP---VRS 50 ++ KKR L D+ + + ++ + AGL + +A I + + Sbjct: 319 LRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEALPREGPGEERALSG 378 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E R ++ +S SE+ R + L+ + +I + + G SR LR Sbjct: 379 ELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNG----------SRNLR 428 Query: 111 DRKNMKAK 118 + ++ + Sbjct: 429 EALKLEME 436 >gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 203 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 5/143 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D++ + G+ A+ ++V D + + V LG S ++ + + Sbjct: 62 LPLACDLLAACLETGVTSRRALELVVEALGRDSLNTPLPAVSSALRLGASAVQAWAEVPA 121 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133 + E + G L+ L L+ R A + + + + Sbjct: 122 ELGWTE---VARAFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMALPLGV 178 Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156 LP + V G+ + L Sbjct: 179 CFLPAFLLVGVLPVIFGFAHSLW 201 >gi|311693308|gb|ADP96181.1| type II secretion system protein [marine bacterium HP15] Length = 409 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R LD+ + +AG+P+ + + + P + V G +++ Sbjct: 61 RKKVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDVTTRLEGGTTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + F +I V G L +A LS IL ++ K +++ Sbjct: 121 TAMQAHPKVFS----ELFIAMIHVGENTGM-LDDAFRRLSEILELERDTKRRLKQ---AM 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++I +L + + + P + +V Sbjct: 173 RYPMFVIIALLSALMIVNFLVIPKFASVF 201 >gi|258593743|emb|CBE70084.1| Type 4 fimbrial assembly protein pilC [NC10 bacterium 'Dutch sediment'] Length = 404 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 23/191 (12%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K A F +D AGLP+ + + Q + F+ ++ Sbjct: 59 KKVKDKDLAVFTRQLATMID-------AGLPLVQCLDTLASQQPN---KGFKNILAEIRE 108 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + ++ P ++ ++ + GG L L L+ + ++ KV+ Sbjct: 109 DVEGGSTFTTALKRHPTVFTPLYANMVE-AGEAGGMLDTILNRLAVYIEKATTLRRKVKG 167 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN------------VLINDPRGHMLLGVAA 169 + + ++ + V G+ V+ + Sbjct: 168 ALIYPSTIVVVAIAVVVFLLIFVIPVFAGFFEGSGVELPLPTQIVMTLSRLVRTYILACL 227 Query: 170 AFMLIGIMVMR 180 F++ G++ +R Sbjct: 228 GFLIAGVVGIR 238 >gi|300790608|ref|YP_003770899.1| type II secretion system protein [Amycolatopsis mediterranei U32] gi|299800122|gb|ADJ50497.1| type II secretion system protein [Amycolatopsis mediterranei U32] Length = 252 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + G +++ L R +++A +ASA ++ LP L Sbjct: 153 LAKRHGLPMADVLDAARRDAEAGLAFGRRMRAKLAGPRASAAVLTGLPVLCVLLGQAMGA 212 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ++VL G +LL + G R + Sbjct: 213 APLSVLTGSTPGQVLLVAGCVLLWAGTAWCRAL 245 >gi|257389095|ref|YP_003178868.1| hypothetical protein Hmuk_3056 [Halomicrobium mukohataei DSM 12286] gi|257171402|gb|ACV49161.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286] Length = 564 Score = 42.0 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 19/182 (10%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSES 68 P+AL +I R V G AV + + V + LG+ L + Sbjct: 346 EAVEAGLPDALSLIGRRVTRGTATERAVEDVATAVPGATGTVLAEVAGRQRRLGVDLRTA 405 Query: 69 ISRMVRY-----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--------DRKNM 115 + +P + ++++++ ++ G +AL ++ L+ +R+ + Sbjct: 406 F--VGERGALATVPSERAESAASLLALSAREGRPAGDALLAMADHLQTIDEAEQANRRAV 463 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFM 172 LS A A ++G +S + P +V D G +L +A Sbjct: 464 AQVTNTLSNTAAVFAPLVGGATVALSAAMGSAGPLGGSVATADLGLAVGWYVLVLAIVLT 523 Query: 173 LI 174 + Sbjct: 524 TL 525 >gi|333011492|gb|EGK30906.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-272] gi|333021737|gb|EGK40986.1| bacterial type II secretion system protein F domain protein [Shigella flexneri K-227] Length = 400 Score = 41.6 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K+ + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|239817190|ref|YP_002946100.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803767|gb|ACS20834.1| type II secretion system protein [Variovorax paradoxus S110] Length = 409 Score = 41.6 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 55/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +++P V + G SLS + + +Y Sbjct: 79 LATMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L + L L+ + + +K+K+++ M + + + + Sbjct: 134 DNLYCNLVEAGEAAGILEDLLDRLATYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIM 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L +A + + + Sbjct: 194 IFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWL 231 >gi|134298809|ref|YP_001112305.1| hypothetical protein Dred_0945 [Desulfotomaculum reducens MI-1] gi|134051509|gb|ABO49480.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1] Length = 261 Score = 41.6 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 7/183 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ETQHLGLS 64 ++ K D N + AGL + I +P SEF+ + S Sbjct: 80 RKLKKHRDQAKNFITSAGGLYGAGLETPQVLKAIAQSFPEPFASEFQSISARRELDPTTS 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + + + L E+ + + A A S+ L ++ ++ + Sbjct: 140 VPKMLMELADKYNLPEMKA--EAAVIAAASTAGGPAAAARGSKRLGKALRLRDELIQERI 197 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM-RLMI 183 +A I + + D G + + + + +G+ ++ R + Sbjct: 198 QATYEPKIASIFVITIIGVGLLLDATAFREYFKD-GGQLAMSFS-CLIFVGLTLITRRAL 255 Query: 184 NFD 186 D Sbjct: 256 KVD 258 >gi|258510316|ref|YP_003183750.1| Type II secretion system F domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477042|gb|ACV57361.1| Type II secretion system F domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 412 Score = 41.6 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +DF VRAG+P+ A+ V+ Q P++ V G +L ES++ Sbjct: 68 EDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVAEVAAKVEGGTALWESLAEY 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P F ++ + G+L E L + +R + + + + A + Sbjct: 128 PKVFP----PMFVQMVR-AGEASGSLEEVLESTARF---EEGQRETISKIKSALMYPALV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 L+ P +++V Sbjct: 180 SVMSVLVAGFLMINVIPSFVSVF 202 >gi|262170629|ref|ZP_06038307.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451] gi|261891705|gb|EEY37691.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451] Length = 408 Score = 41.6 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ + G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASTHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|320179666|gb|EFW54615.1| Type IV fimbrial assembly protein PilC [Shigella boydii ATCC 9905] gi|332095395|gb|EGJ00418.1| bacterial type II secretion system protein F domain protein [Shigella boydii 5216-82] Length = 400 Score = 41.6 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|258405228|ref|YP_003197970.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797455|gb|ACV68392.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 401 Score = 41.6 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 F F +D +G+P+ A+ V+ Q+ D +R + V G SL E++ Sbjct: 66 FSRQFATMID-------SGVPILQALQVMCEQTENDKLRRKLYEVRNDIEGGSSLYEALR 118 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + T + + GG L L L+ + N+K+KV+ Sbjct: 119 KHPDV-----FDDLYTNMVNAGETGGVLDVILDRLATYIEKAANLKSKVR---AALIYPG 170 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + ++ ++ F P L ND Sbjct: 171 VVSFVAVAVIAIILIFVIPT-FEQLFND 197 >gi|120553690|ref|YP_958041.1| type II secretion system protein [Marinobacter aquaeolei VT8] gi|120323539|gb|ABM17854.1| type II secretion system protein [Marinobacter aquaeolei VT8] Length = 409 Score = 41.6 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 9/149 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R A LD+ + +AG+P+ + + + P + + G +++ Sbjct: 61 RKAVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDITNRLEGGTTMA 120 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + F +I V G L ++ LS IL ++ K +V+ Sbjct: 121 TAMQAHPKVFS----ELFIAMIHVGENTGM-LDDSFKRLSEILELERDTKRRVKQAL--- 172 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + +++ +L + + + P + +V Sbjct: 173 RYPTFVVIALLAALMVVNFLVIPRFASVF 201 >gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str. Paraca] gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39] Length = 377 Score = 41.6 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AG+ ++ ++V+ Q + ++ +R I T + E +S +R P F +++ Sbjct: 50 AGISMARCLSVLGEQCEN---AKLKRAINTLRADVEEGEELSLSMRKFPDVFDQLFVSMV 106 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 + GG L E L L+ ++ ++++++ + K +I ++ F ++T + T Sbjct: 107 W-AGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFIAIAVFFGMATFLLPTF 165 Query: 149 PGYMN 153 G Sbjct: 166 SGIFE 170 >gi|55378590|ref|YP_136440.1| hypothetical protein rrnAC1849 [Haloarcula marismortui ATCC 43049] gi|55231315|gb|AAV46734.1| unknown [Haloarcula marismortui ATCC 43049] Length = 360 Score = 41.6 bits (97), Expect = 0.047, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGL 63 ++ R PNAL + R + G V A+ V ++ P + + +HLG Sbjct: 138 VRGRITDIEAGLPNALSAVGRRLDRGQSVEAALVEAVDETPKPTSAVIKAAAARQEHLGT 197 Query: 64 SLSESI 69 S+ + Sbjct: 198 SVEGAF 203 >gi|330966320|gb|EGH66580.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 405 Score = 41.6 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A +I + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + +V N L V A ++ + Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226 >gi|291303313|ref|YP_003514591.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM 44728] gi|290572533|gb|ADD45498.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 41.6 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%) Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + G S L L+ LR + + + ASA ++ +LP L Sbjct: 136 ATVHITETAGAPTSRLLDQLAEDLRAEARIATTLTTNTAGILASARLLAALPVAGLALGQ 195 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L++ P G VA L G+ R ++ Sbjct: 196 ALGTRPLETLLHTPVGAGCAAVAVTLQLAGLAWSRRIL 233 >gi|324112483|gb|EGC06460.1| type II secretion system protein F [Escherichia fergusonii B253] gi|325496039|gb|EGC93898.1| type IV pilin biogenesis protein [Escherichia fergusonii ECD227] Length = 400 Score = 41.6 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 21/187 (11%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL 61 H +R+A+ + ++AGL +S+ +A++ GQ + ++ + + Sbjct: 54 HWSSRRSAEVIHQL-------ATLLKAGLTLSEGLALLAGQHPSEQWQALLQTLAHELEQ 106 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +LS ++++ P + +L G L E L+R + + + KV+ Sbjct: 107 GNALSRALTQWSEVFPP-----LYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKK 161 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI---GI 176 + I+ V +++F P + + N P + GV A I G Sbjct: 162 AL---RYPLIILTLAIVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGG 218 Query: 177 MVMRLMI 183 ++M L++ Sbjct: 219 LIMALIV 225 >gi|148547559|ref|YP_001267661.1| type II secretion system protein [Pseudomonas putida F1] gi|148511617|gb|ABQ78477.1| type II secretion system protein [Pseudomonas putida F1] Length = 396 Score = 41.6 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + +R A F + + AGLP+ DA+ + +S R ++ Sbjct: 47 LRSMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL R R ++ + Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 158 Query: 120 QALSM 124 + Sbjct: 159 LVGAS 163 >gi|237743190|ref|ZP_04573671.1| general secretion pathway protein F [Fusobacterium sp. 7_1] gi|229433486|gb|EEO43698.1| general secretion pathway protein F [Fusobacterium sp. 7_1] Length = 346 Score = 41.6 bits (97), Expect = 0.049, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + R++ + G S+ ES + + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGKSIFESFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++SR L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSITERLEDISRSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|298485508|ref|ZP_07003591.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159972|gb|EFI01010.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 405 Score = 41.6 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A +I + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + +V N L V A ++ + Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226 >gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme DSM 15981] gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme DSM 15981] Length = 416 Score = 41.6 bits (97), Expect = 0.050, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SEFRR 54 K+R + L D+P + ++ + AG+ V A I G D + E Sbjct: 258 AKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEMYE 317 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113 G+ ++ R L +++ + G N+ E L + + Sbjct: 318 TCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLR---AEMTEAF 374 Query: 114 NMKA 117 ++ Sbjct: 375 ELRK 378 >gi|330973678|gb|EGH73744.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 405 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIIGEGAENPNMRALVSSLKQEVSAGNSFAMALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G M+IG+ Sbjct: 187 ILLIEVVPQFQSVF----AGFGAELPTFTLMVIGL 217 >gi|313679704|ref|YP_004057443.1| type II secretion system f domain [Oceanithermus profundus DSM 14977] gi|313152419|gb|ADR36270.1| Type II secretion system F domain [Oceanithermus profundus DSM 14977] Length = 406 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78 + + AGLP+ A+A++ Q+ + F+++++ G S S+++++ Sbjct: 74 LATMLSAGLPIVQAIAILERQTEN---KAFQKLLKEIRTDVEGGSSFSDALTK------H 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + S + + G L L L+ L ++ K++ ++ Sbjct: 125 KVFSRLYVNLVRAGETSGTLDGVLDRLATFLEKDLELRGKIK---SAMTYPVIVLVFALL 181 Query: 139 CVSTLVYFTSPGYMNVLIN 157 L+ P + +L + Sbjct: 182 VTYFLLTGIVPQFAQILTD 200 >gi|289650993|ref|ZP_06482336.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. aesculi str. 2250] Length = 177 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +RS + + G S + ++ R Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F ++ + G L L ++ + +KAK++ Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK 169 >gi|331681489|ref|ZP_08382126.1| protein transport protein HofC [Escherichia coli H299] gi|331081710|gb|EGI52871.1| protein transport protein HofC [Escherichia coli H299] Length = 400 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P G +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233 Query: 178 VMRL 181 +MR Sbjct: 234 LMRR 237 >gi|296453318|ref|YP_003660461.1| hypothetical protein BLJ_0137 [Bifidobacterium longum subsp. longum JDM301] gi|296182749|gb|ADG99630.1| hypothetical protein BLJ_0137 [Bifidobacterium longum subsp. longum JDM301] Length = 218 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + +LG L + R + M+ KA+ ++ +LP L Sbjct: 120 LSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALPAVTVALGELLGA 179 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L+ PRG + L + G+ MR ++ Sbjct: 180 RPLAFLLGSPRGVVCLTLGGCCYAAGLAWMRALLK 214 >gi|221068971|ref|ZP_03545076.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220713994|gb|EED69362.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 405 Score = 41.6 bits (97), Expect = 0.051, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +++P V + G SLS + + Y Sbjct: 75 LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 DSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D LL + + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYWWL 227 >gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv. glycinea str. race 4] Length = 229 Score = 41.6 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 11/165 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ L+ + P ++ + + G + + + +G + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217 >gi|299529715|ref|ZP_07043152.1| type II secretion system protein [Comamonas testosteroni S44] gi|298722578|gb|EFI63498.1| type II secretion system protein [Comamonas testosteroni S44] Length = 405 Score = 41.6 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +++P V + G SLS + + Y Sbjct: 75 LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 NSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D LL + + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYWWL 227 >gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium 1_7_47_FAA] gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium 1_7_47FAA] Length = 403 Score = 41.6 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 P + + AG+P+S A+AV + D P+R R+ E+ H G +L E++ M Sbjct: 68 LPPLCRQLSAMLAAGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPG 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + +I + G L L ++ + M KV+ ++G Sbjct: 128 VFP----NLLVYMIQT-GESSGKLDVMLGTMAEYYDREEEMNGKVR---AAMTYPVILLG 179 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ P + +++ LL +G+ Sbjct: 180 VTIMSSVFMLTTVLPQFASMMKEQEL--PLLTRVLMSASLGL 219 >gi|313673605|ref|YP_004051716.1| type ii secretion system f domain [Calditerrivibrio nitroreducens DSM 19672] gi|312940361|gb|ADR19553.1| Type II secretion system F domain [Calditerrivibrio nitroreducens DSM 19672] Length = 403 Score = 41.6 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ A+ +I Q+S VR F + G S + + Sbjct: 69 LSTMISAGLPIMKALDIIASQASKKSVREMFEDIKSQIEQGAPFSRGLEKYRNVFG---- 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ + GG L L L+ + ++K KV+A M + + + + Sbjct: 125 DLYINMVR-AGEAGGLLDNVLDRLAGYMEKAISLKRKVKAAMMYPSIVLTVAVVVVWGLM 183 Query: 142 TLVYFTSPGYMNVL 155 + Sbjct: 184 VFIIPKFKEMYEGF 197 >gi|312882864|ref|ZP_07742596.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC BAA-2122] gi|309369383|gb|EFP96903.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC BAA-2122] Length = 408 Score = 41.6 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 77 LSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHVFD---- 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 133 ELFRSMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLQ----QAMIYPIVLVVFAVGIV 187 Query: 142 TLVY 145 + Sbjct: 188 AFLL 191 >gi|170780637|ref|YP_001708969.1| putative integral membrane protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155205|emb|CAQ00306.1| putative integral membrane protein [Clavibacter michiganensis subsp. sepedonicus] Length = 333 Score = 41.6 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + V + G L+ +L L+ L D ++ A++ + +P L Sbjct: 106 LAAGLEVADRTGAPLARSLDRLAVSLVDIARVRRDAGTALAGPVATSRTVLLMPGAGLLL 165 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + VL+ G LGV ++ + IG R ++ Sbjct: 166 AAGLGFDPLRVLVTTLPGLACLGVGSSLVAIGWRWNRDLVR 206 >gi|119952476|ref|YP_949890.1| hypothetical protein AAur_pTC10016 [Arthrobacter aurescens TC1] gi|119951606|gb|ABM10516.1| putative Membrane protein [Arthrobacter aurescens TC1] Length = 317 Score = 41.6 bits (97), Expect = 0.053, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 16/162 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ K +F+ LD++ S+ AG ++A+ +D V + +T+ Sbjct: 146 LRTQAAKVRGQFVWGLSIYLDLVAMSMEAGKGHAEALPAAAKMGADRVGEGRGLLSDTRV 205 Query: 61 LG-------------LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 G ++ E++ R+ ++E+ + I + + G + +L + Sbjct: 206 FGEIRSAIQRAPEKAITAWEALGRLGERYGIRELISLRSSIELANDEGSRVKASLIARAE 265 Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 +R + A +A + + + + +Y +P Sbjct: 266 TMRSARLAGALERANNATESMRQLTMVA---AILAGIYIAAP 304 >gi|84393982|ref|ZP_00992721.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01] gi|84375376|gb|EAP92284.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01] Length = 409 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S + + G +S+++ + Sbjct: 78 LATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAM-----RTASRHF 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + +L GNL++ L+ + +K+KV + A ++ Sbjct: 133 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALI---YPAMVVAVALTVSY 189 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 190 LMLTMVIPEFESMF 203 >gi|314917528|gb|EFS81359.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA1] Length = 300 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D + + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 +A + + W++ +P V LV T P Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|309790163|ref|ZP_07684735.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6] gi|308227748|gb|EFO81404.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6] Length = 309 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 17/195 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + + D A+ + +++G A+ I+ P+R E+ ++ Q Sbjct: 112 LAYAKARYIHALDRDLTTAVGRLSALLKSGSGFRSAIERIIRDMPTCPLRDEWAFLLTRQ 171 Query: 60 HLGL------SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----IL 109 L + + ++ + + + +SV G + LA + Sbjct: 172 GANLATGSIATPQQVVAALSLQTLSPRHATLLSHLSVAV---GQPQDVLARRCEAAYSAI 228 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LG 166 +D + + + + S +G ++ + T + + P G ++ + Sbjct: 229 QDSDRRREEAATELAQMRYSGIAVGLAGVLMAIYLTATQWERVLIAYQTPLGIIVGILVI 288 Query: 167 VAAAFMLIGIMVMRL 181 A +IG V+ Sbjct: 289 SALLLPIIGGFVLAR 303 >gi|297623007|ref|YP_003704441.1| Type II secretion system F domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164187|gb|ADI13898.1| Type II secretion system F domain protein [Truepera radiovictrix DSM 17093] Length = 409 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 13/168 (7%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70 F F ++ AGLPV ++A++ Q+ D ++ +R+ E G LSE+++ Sbjct: 73 FSRQFATVIN-------AGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALA 125 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + GNL L ++ + ++ K+++ Sbjct: 126 KHPKLFGR-----LYVYLVRAGEASGNLDSILERIALYQEKQAALRGKLRSALTYPTVVL 180 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 I + + + T + G + L + + +A + L G Sbjct: 181 LIALGVTYFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWW 228 >gi|108763511|ref|YP_633923.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622] gi|46560496|gb|AAT00616.1| type IV pilin [Myxococcus xanthus] gi|108467391|gb|ABF92576.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622] Length = 417 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 17/148 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGLP+ + ++ Q +P + + G + ++++ Sbjct: 83 FTRQFATMID-------AGLPLVQCLDILASQMDNPSFKKVLFAIKSKVEQGSTFADALK 135 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + E+ + ++GG L L L+ + +K+KV++ Sbjct: 136 EHPKVFD--ELY---VQLCAAGEVGGILDAILNRLAAYREKNEKLKSKVKSAMTYP---- 186 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158 I+ + V+ ++ + D Sbjct: 187 IIVILVAIGVTAVLLLKVTPVFEKMFAD 214 >gi|94312040|ref|YP_585250.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93355892|gb|ABF09981.1| Type IV pilus assembly protein PilC [Cupriavidus metallidurans CH34] Length = 421 Score = 41.6 bits (97), Expect = 0.054, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ ++ +I ++P + G S++ + R +Y Sbjct: 91 LSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRRHPQY-----F 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG L L LS + +K ++++ + A + ++ + Sbjct: 146 DTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQIKSAMIYPIAVLTVAFAVTVILM 205 Query: 142 TLVYFTSPGYMNVL 155 V G + Sbjct: 206 LFVIPAFKGVFSSF 219 >gi|300905515|ref|ZP_07123278.1| type II secretion system F domain protein [Escherichia coli MS 84-1] gi|301303794|ref|ZP_07209914.1| type II secretion system F domain protein [Escherichia coli MS 124-1] gi|300402624|gb|EFJ86162.1| type II secretion system F domain protein [Escherichia coli MS 84-1] gi|300840921|gb|EFK68681.1| type II secretion system F domain protein [Escherichia coli MS 124-1] gi|315254904|gb|EFU34872.1| type II secretion system F domain protein [Escherichia coli MS 85-1] Length = 400 Score = 41.6 bits (97), Expect = 0.055, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAILHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|332526519|ref|ZP_08402631.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2] gi|332110787|gb|EGJ10964.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2] Length = 410 Score = 41.6 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 13/177 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + + +K A F ++AG+P+ A ++ +S+P + + Sbjct: 66 RSIKQKDIAIFTRQL-------ATMMKAGVPLLQAFDIVARGASNPRMTKLLNDIRSDVE 118 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS + Q + + GG L L L+ +K K++ Sbjct: 119 TGTSLSAAF-----RKHPQHFDSLYCNLIEAGEAGGILEALLERLAIYQEKTMALKQKIK 173 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + M A + + + V D L +A + + Sbjct: 174 SALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIALSEFFVNWW 230 >gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] Length = 596 Score = 41.6 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 2/145 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL- 61 +I R + P + + R G + + + + +R E +R++ + Sbjct: 117 MISNRKNSVESELPFFMAYVSTMARGGYSLEKLIERVSQLKIFSGIRLEAQRIVTHMKMF 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ R+ P + + GG++ L +R + + + + + Sbjct: 177 GEDPITALDRVAMNHPSTRFRDVMLGYTTTLRSGGDVVHYLETRTREVFESRMNEIRALF 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF 146 + + + + + ++ ++F Sbjct: 237 GRLASYLEVYTVFGVIMAIAVFIFF 261 >gi|257868320|ref|ZP_05647973.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257802434|gb|EEV31306.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] Length = 278 Score = 41.6 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 17/157 (10%) Query: 32 PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTVI 88 V ++ ++V + + E ++I ++G + + ++ FF + Sbjct: 96 TVDQSLQLVVKRLDGELARELTQLIAALNVGSDPQRVSALLKELGERY-SADL-FFGQYL 153 Query: 89 SVQSQL----GGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 Q + G E L ++ +++L + +L K L + Sbjct: 154 D-QLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGVKIMTIAFLLLILLM 212 Query: 141 STLVYFTS---PGYMNVLINDPRGHMLLGVAAAFMLI 174 Y + Y+ + G+ + + + I Sbjct: 213 HGASYMMNGNLDQYIQGFSHHIIGYAVATICSVSFFI 249 >gi|300786332|ref|YP_003766623.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei U32] gi|299795846|gb|ADJ46221.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei U32] Length = 401 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 22/171 (12%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 VRAGLP+ DAV ++ ++++ V R V + G LS+ + R + P F Sbjct: 74 VRAGLPLIDAVRILGEEAANSSVARMLRSVEQGLRGGDRLSDCVDRHPKIFPE-----FY 128 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 I ++L G L L L+ L + K++A + A + ++T V Sbjct: 129 REILRSAELTGQLDVVLDQLADYLERDLEARRKIKAALIYPAMIAVMSVVTVVVLATFVL 188 Query: 146 FTSPGYMNVL-------------INDPRG---HMLLGVAAAFMLIGIMVMR 180 + L I D G LL A + + +R Sbjct: 189 PRFKSFFASLNAKLPLPTRMLLAITDFLGAWWWALLAGLVALIALYSFAVR 239 >gi|264676897|ref|YP_003276803.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262207409|gb|ACY31507.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 405 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +++P V + G SLS + + Y Sbjct: 75 LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 NSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D LL + + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYWWL 227 >gi|226939982|ref|YP_002795055.1| type II secretion system protein [Laribacter hongkongensis HLHK9] gi|226714908|gb|ACO74046.1| Bacterial type II secretion system protein [Laribacter hongkongensis HLHK9] Length = 401 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 70/158 (44%), Gaps = 14/158 (8%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAG+P+ + +A + +S P+ R ++ G LSE+++ V+ + Sbjct: 73 LRAGVPLLEGLADLRDSASSPLFREILAMLVLDIEGGKRLSEALAEHPSVFDSVFVNLVA 132 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 T + G L + LA L+ L+ + + A+ + + + A++ L + L+ Sbjct: 133 TG-----ETTGALPDVLARLADQLKWQDELIAQTRKILL---YPAFVGTMLLLVIIFLMT 184 Query: 146 FTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMV 178 + P ++ + + + +LL V+ F+ G ++ Sbjct: 185 YLVPQLVDFIRDIQKELPLQTRILLAVSDVFVHFGWLM 222 >gi|218703363|ref|YP_002410882.1| type IV pilin biogenesis protein [Escherichia coli UMN026] gi|293403176|ref|ZP_06647273.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412] gi|298378708|ref|ZP_06988592.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302] gi|300900864|ref|ZP_07119002.1| type II secretion system F domain protein [Escherichia coli MS 198-1] gi|218430460|emb|CAR11326.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli UMN026] gi|284919883|emb|CBG32938.1| protein transport protein HofC [Escherichia coli 042] gi|291430091|gb|EFF03105.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412] gi|298281042|gb|EFI22543.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302] gi|300355665|gb|EFJ71535.1| type II secretion system F domain protein [Escherichia coli MS 198-1] Length = 400 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|171912199|ref|ZP_02927669.1| type II secretory pathway component [Verrucomicrobium spinosum DSM 4136] Length = 424 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 26/175 (14%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F ++ + L AGL + A+ + ++ ++ R+ E G S ++S Sbjct: 88 QFTEELSDLL-------GAGLQLEPALHSLENRNKSSLQVLAGRLREKVRDGTPFSAALS 140 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ + + GG+L+ L +R + ++AKV ++A Sbjct: 141 QVC-----ASFGDLYCNLVAAGEAGGSLAAILRRQARYMNQMAALRAKV--------SNA 187 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV----LINDPRGHMLLGVAAAFMLIGIMVMRL 181 I + + F GY+ LI G L V A +ML G + ++ Sbjct: 188 LIYPAFIIASGIALAFVFSGYLLPKLTVLIKHTSGD--LPVFAKWMLAGNLALKQ 240 >gi|56476087|ref|YP_157676.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56312130|emb|CAI06775.1| Bacterial type II secretion system protein [Aromatoleum aromaticum EbN1] Length = 392 Score = 41.2 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ +RAG+P+++A++ + + VR+ ++ G SLS ++ P Sbjct: 63 MLALLRAGIPLAEAISALAEGEGRRAVRAVLLKLQGALREGRSLSNALESASEAFPS--- 119 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + ++ +L AL + + ++ K+ SA I L V Sbjct: 120 --FYIAMVRAAERTSDLDLALERYIAYQQQVETLRGKL--------VSAAIYPVLLLAVG 169 Query: 142 TLVYFTSPGYMNVLIND 158 LV GY+ + Sbjct: 170 GLVVLFLLGYVVPRFSH 186 >gi|288553597|ref|YP_003425532.1| competence or secretion-like protein [Bacillus pseudofirmus OF4] gi|288544757|gb|ADC48640.1| competence or secretion-like protein [Bacillus pseudofirmus OF4] Length = 402 Score = 41.2 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 6/137 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L ++AG+ V DA ++ Q+S +++ V + G S++ + P Sbjct: 69 LRQFATLLKAGISVVDATVILREQTSSKKLKAALHDVEDELRAGNPFSQAAENQKKVFP- 127 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F ++ +LGGNL + L L+ + K KV + ++ + Sbjct: 128 ---PLFVN-MAKAGELGGNLDDILERLASYYEKQHKTKQKVMSAMSYPIVVGFVAIIIVI 183 Query: 139 CVSTLVYFTSPGYMNVL 155 + + V T Sbjct: 184 FLLSYVVPTFADMFASF 200 >gi|237801182|ref|ZP_04589643.1| general secretion pathway protein F [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024039|gb|EGI04096.1| general secretion pathway protein F [Pseudomonas syringae pv. oryzae str. 1_6] Length = 228 Score = 41.2 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|163782961|ref|ZP_02177956.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1] gi|159881641|gb|EDP75150.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1] Length = 397 Score = 41.2 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 ++ L + + AG+ ++ A+ ++ Q+ D V S + + G LS + Sbjct: 62 EEELSFVLLQLSVLIEAGISLARALELVASQTEDERVASALLEIKGSVERGEPLSSAF-- 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R L F + + ++ G NL A + L +MK+++ + Sbjct: 120 --RRSGL--FPEFLSEMLTAAETGENLERIFAIAGKHLETVADMKSRIVGAIT---YPSV 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 +IG F + + F P VL Sbjct: 173 VIGFSIFALFVAIKFVVPKIAKVL 196 >gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1] gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1] Length = 404 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 17/171 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VRAG+P+ A+ + QS P V S V G SL +++ + P ++ Sbjct: 74 LATLVRAGIPIEGALRAVSKQSEKPKVASIMLAVRSRVVEGHSLESALAEFPQAFP--DL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-----LSMEAKASAWIIGSL 136 + + G+L L LS R + +Q + + A A ++G L Sbjct: 132 YRATIG---AGEHSGHLDLVLEQLSDYTESRHRTQRTIQGAMIYPIVLTAFAVLIVVGML 188 Query: 137 PFCVSTLVYFTS------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 F V +V P VLI A ++ + + Sbjct: 189 MFVVPKIVTVFESSGQQLPAMTQVLIGTSAFLQHWWWALLLVIGLFVWLWR 239 >gi|262402016|ref|ZP_06078581.1| general secretion pathway protein F [Vibrio sp. RC586] gi|262351988|gb|EEZ01119.1| general secretion pathway protein F [Vibrio sp. RC586] Length = 406 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 19/179 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---------ALSMEAKASAWI 132 F ++++ + G+L L L+ +R+ M++K+Q + + + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLL 189 Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +P V V P L++ D H + + + ML+ +V L+ D+ Sbjct: 190 AAVVPKIVGQFVQIGQALPASTQFLLDASDFLQHWGIWLLISLMLLIYLVRWLLTKPDI 248 >gi|127511327|ref|YP_001092524.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636622|gb|ABO22265.1| type II secretion system protein [Shewanella loihica PV-4] Length = 405 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + R+G+P+ A+A + S ++ + E G LS +++ Sbjct: 73 MYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSAMNHHPDVFD---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F ++I V + G L +A LS + + + +++ + +++ ++ + Sbjct: 129 ALFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLMAVALAMV 184 Query: 142 TLVYFTSPGYMNVL 155 L P + ++ Sbjct: 185 VLNIMVIPKFADLF 198 >gi|312958905|ref|ZP_07773424.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6] gi|311286675|gb|EFQ65237.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6] Length = 402 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 16/168 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A +I PVR + + + G SL+E++ + RY Sbjct: 72 LATLLKAGIPLLQAFDIIGEGFDNAPVRDLAQGLKQQIAAGSSLAEALHKHPRY-----F 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +KA+++ A + G + + Sbjct: 127 DDLYCNLVAAGEQAGALETLLERVAVHREKSEQLKARIKKAMTYPIAVLVVAGLVTGVLL 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVA----------AAFMLIGIMVM 179 V + G L +A A + +G VM Sbjct: 187 VHVVPQFQSLFAGVDGQLPGFTLQVIALSEFMQRAWWAVMLGLGAGVM 234 >gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC BAA-613] gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC BAA-613] Length = 426 Score = 41.2 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRSE 51 ++ ++R + D+P L + + AG+ + A I + V E Sbjct: 265 QNRTEERKRQLALDYPEVLSRLTIFLGAGMSIRTAWDKIALEYKMMVEQGRRRKRYVYEE 324 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LR 110 G+ ++ R LQ ++ + G S+ L NL R + Sbjct: 325 MYETSCQMKGGVPEGKAFEEFGRRCGLQSYMKLGGLLEQNRKNG---SKNLRNLLRTEMT 381 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 D + E + ++ +V P M Sbjct: 382 DAFEQRKHQARRLGEEAGTKLLLPLFILLSVVMVMIAVPALMEF 425 >gi|262166739|ref|ZP_06034476.1| general secretion pathway protein F [Vibrio mimicus VM223] gi|262026455|gb|EEY45123.1| general secretion pathway protein F [Vibrio mimicus VM223] Length = 406 Score = 41.2 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|291279694|ref|YP_003496529.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] gi|290754396|dbj|BAI80773.1| general secretion pathway protein F [Deferribacter desulfuricans SSM1] Length = 402 Score = 41.2 bits (96), Expect = 0.062, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ + +++G+P+S+++ + Q ++ V+S + G+ LS ++ Sbjct: 68 LPDVFFQLAMLLKSGIPLSESLKITGNQVNNKKVKSILLALSAKVSEGIKLSVAMQEFND 127 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 Y ++ + G L+E N++R +++ K++ ++ Sbjct: 128 YFS----DVLINLVRTSEETG-RLAETFENVARYEEEKRKSMDKIKV---AMIYPMIVLS 179 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 V L+ + P N+ Sbjct: 180 IGMGVVGFLLSYVVPKMKNIF 200 >gi|313498630|gb|ADR59996.1| Type II secretion system protein [Pseudomonas putida BIRD-1] Length = 396 Score = 41.2 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + +R A F + + AGLP+ DA+ + +S R ++ Sbjct: 47 LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL R R ++ + Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 158 Query: 120 QALSM 124 + Sbjct: 159 LVGAS 163 >gi|260495328|ref|ZP_05815455.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33] gi|260197106|gb|EEW94626.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33] Length = 346 Score = 41.2 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + R++ + G S+ ES + + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGKSIFESFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L + K+ + + +I V+ Sbjct: 75 YMLKIG-----EVSGSITERLEDISKSLEFDLTNQKKLGGILV---YPIVVISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|331004876|ref|ZP_08328293.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989] gi|330421330|gb|EGG95579.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989] Length = 408 Score = 41.2 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 9/150 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSL 65 KR ++ + +AGLP+ + + V SS P++ V G+SL Sbjct: 62 KRKKVSDEELVMFCRQMYTINKAGLPLMQGLESLSVSISSGPLQECLIDVTHRLETGVSL 121 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++ + F +I + + G L A + + K ++ Sbjct: 122 SSAMGYHRHIFN----NLFLGMIKIGEETG-KLDNIFAQMGVYISRDIETKKSIK---SA 173 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++++ ++ + + P + ++ Sbjct: 174 LRYPSFVLSAMVVALFVVNLMVIPAFADMF 203 >gi|170739450|ref|YP_001768105.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168193724|gb|ACA15671.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 404 Score = 41.2 bits (96), Expect = 0.064, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + AGL V A+ ++ QS +R V++ G SLS +++ + P + V Sbjct: 79 LGAGLTVDRALRLVERQSPGALRPVLADVLQRVLAGASLSRAMAAHPQAFPREMVDGL-- 136 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + G L E +A L+ L R ++ + A ++ + +V Sbjct: 137 ---RAGEATGTLGEVVATLTASLERRDAVRRHL----ASAMIYPALLILMGLGTLGMVIG 189 Query: 147 TSPGYMNVLIN 157 + L Sbjct: 190 VLVPALLPLFE 200 >gi|161504730|ref|YP_001571842.1| type IV pilin biogenesis protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866077|gb|ABX22700.1| hypothetical protein SARI_02853 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 400 Score = 41.2 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 28/178 (15%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAA 170 I+ V +++F P + + G ++L +A Sbjct: 169 IMTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILLLAVI 226 >gi|261211293|ref|ZP_05925582.1| general secretion pathway protein F [Vibrio sp. RC341] gi|260839794|gb|EEX66405.1| general secretion pathway protein F [Vibrio sp. RC341] Length = 406 Score = 41.2 bits (96), Expect = 0.065, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 14/171 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 F ++++ + G+L L L+ +R+ M++K+ QA+ + +G + F + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLL 189 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA-------AAFMLIGIMVMRLMIN 184 + +V ++ + P L A ++LIG M++ ++ Sbjct: 190 AAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGIWLLIGFMLLIYLVR 240 >gi|300702980|ref|YP_003744582.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299070643|emb|CBJ41938.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 421 Score = 41.2 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++P + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ F P + NV Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216 >gi|258620395|ref|ZP_05715433.1| General secretion pathway protein F [Vibrio mimicus VM573] gi|258587274|gb|EEW11985.1| General secretion pathway protein F [Vibrio mimicus VM573] Length = 406 Score = 41.2 bits (96), Expect = 0.066, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|258624629|ref|ZP_05719565.1| General secretion pathway protein F [Vibrio mimicus VM603] gi|258583093|gb|EEW07906.1| General secretion pathway protein F [Vibrio mimicus VM603] Length = 406 Score = 41.2 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|296120678|ref|YP_003628456.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013018|gb|ADG66257.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 419 Score = 41.2 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 9/124 (7%) Query: 29 AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ ++ ++ V +++ VIE G +LSE++ + + Sbjct: 95 AGLPILRSLRILEVQAKPGALKNSLMGVIEDIESGSTLSEAMGKQPK-----AFDNLYVN 149 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + GG L L L+ ++++K KVQ A +I V ++Y+ Sbjct: 150 MVRAGEAGGALEVILQRLAEFKERQQSLKRKVQG---AMIYPAAVITVATLIVGFIMYWI 206 Query: 148 SPGY 151 P + Sbjct: 207 IPKF 210 >gi|115376269|ref|ZP_01463509.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] gi|115366694|gb|EAU65689.1| type IV pilin [Stigmatella aurantiaca DW4/3-1] Length = 380 Score = 41.2 bits (96), Expect = 0.067, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 21/140 (15%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSE 67 F F +D AGLP+ + ++ Q +P F++V+ G + ++ Sbjct: 46 FTRQFATMID-------AGLPLVQCLDILGSQMENPA---FKKVVFAIKGKVEQGSTFAD 95 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + F + ++GG L L L+ + +K KV+ S Sbjct: 96 ALKDHPKVFD----ELFVQ-LCAAGEVGGILDTILNRLAAYREKAEKLKGKVK--SAMTY 148 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 S I ++ L+ T Sbjct: 149 PSVVICVAIGVTALLLLKVT 168 >gi|297529397|ref|YP_003670672.1| type II secretion system F domain protein [Geobacillus sp. C56-T3] gi|297252649|gb|ADI26095.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3] Length = 342 Score = 41.2 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 14/151 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81 + R + G P+ A+ + Q+ R E R ++ GL L ++ + M + + Sbjct: 18 LGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALSVDRMAVN-L 76 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF+ + G+L +A L + +++ S + +++ L + Sbjct: 77 LFFA-------ERHGDLPRGMAETGETLAQKARFHEQLRRFS---RYPMFLLSLLIIMLV 126 Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170 + ++ P + + RGH +A Sbjct: 127 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVI 157 >gi|258620853|ref|ZP_05715887.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573] gi|258586241|gb|EEW10956.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573] Length = 408 Score = 41.2 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASSHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|258625145|ref|ZP_05720062.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603] gi|258582596|gb|EEW07428.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603] Length = 408 Score = 41.2 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ ++ G LS+++ Sbjct: 77 LATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASSHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ GNL E L+ + ++AKV + + + + + Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191 Query: 142 TLVY 145 T+V Sbjct: 192 TMVI 195 >gi|262170338|ref|ZP_06038016.1| general secretion pathway protein F [Vibrio mimicus MB-451] gi|261891414|gb|EEY37400.1| general secretion pathway protein F [Vibrio mimicus MB-451] Length = 406 Score = 41.2 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|327454295|gb|EGF00950.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA3] gi|328756054|gb|EGF69670.1| type II secretion system F domain protein [Propionibacterium acnes HL087PA1] Length = 300 Score = 41.2 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D + + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 +A + + W++ +P V LV T P Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|313764977|gb|EFS36341.1| type II secretion system F domain protein [Propionibacterium acnes HL013PA1] gi|313815463|gb|EFS53177.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA1] gi|313829027|gb|EFS66741.1| type II secretion system F domain protein [Propionibacterium acnes HL063PA2] gi|314916258|gb|EFS80089.1| type II secretion system F domain protein [Propionibacterium acnes HL005PA4] gi|314921862|gb|EFS85693.1| type II secretion system F domain protein [Propionibacterium acnes HL050PA3] gi|314930874|gb|EFS94705.1| type II secretion system F domain protein [Propionibacterium acnes HL067PA1] gi|314955331|gb|EFS99736.1| type II secretion system F domain protein [Propionibacterium acnes HL027PA1] gi|314959203|gb|EFT03305.1| type II secretion system F domain protein [Propionibacterium acnes HL002PA1] gi|314969036|gb|EFT13134.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA1] gi|315099723|gb|EFT71699.1| type II secretion system F domain protein [Propionibacterium acnes HL059PA2] gi|315102364|gb|EFT74340.1| type II secretion system F domain protein [Propionibacterium acnes HL046PA1] gi|315109819|gb|EFT81795.1| type II secretion system F domain protein [Propionibacterium acnes HL030PA2] gi|327334604|gb|EGE76315.1| membrane associated protein [Propionibacterium acnes HL097PA1] gi|327456360|gb|EGF03015.1| type II secretion system F domain protein [Propionibacterium acnes HL083PA2] gi|328758899|gb|EGF72515.1| type II secretion system F domain protein [Propionibacterium acnes HL025PA2] Length = 300 Score = 41.2 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 I+ R+ D + + V V A A+ S PV + R +E Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L S + + + L E++ V+ + Q G +L+ AL +RD + K Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 +A + + W++ +P V LV T P Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291 >gi|297572242|ref|YP_003698016.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM 20595] gi|296932589|gb|ADH93397.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM 20595] Length = 223 Score = 41.2 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 33/98 (33%) Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 V + + G +++ L + + D + + SA+++ +LP Sbjct: 116 VVCRMSAGTGAPVADVLDTCASGITDAGEAASARDIALAGPQTSAFMLAALPGVGIGFGT 175 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + G +L + + GI + ++ Sbjct: 176 MLGANPLGFFFSSIIGAGVLILGLSAEFAGIWWVWRLV 213 >gi|227505650|ref|ZP_03935699.1| type II secretion system protein [Corynebacterium striatum ATCC 6940] gi|227197803|gb|EEI77851.1| type II secretion system protein [Corynebacterium striatum ATCC 6940] Length = 257 Score = 41.2 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 9/189 (4%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRV 55 ++ + + R A+ + L + +RAG + A+ + + VR + Sbjct: 69 IRDVNQARQARRGREHLATFLGTVAADLRAGATTAGALQRGVNSVPAECPAAVRLPLQTA 128 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G + + V VI + + G L+ + L + Sbjct: 129 AGMAAHGGHIHAPLVEAAD----PAVVRLGHVIRMSTAHGVALANLIEQAQAQLDAARRH 184 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ +A+A I+ LP + ++ L+ G +LL V A G Sbjct: 185 AKSTESSLQGPQATALILACLPLAGIAMGGAMGADSLSFLLGGGLGGLLLDVGVALACAG 244 Query: 176 IMVMRLMIN 184 R ++ Sbjct: 245 FAWSRYILR 253 >gi|293380456|ref|ZP_06626523.1| type II secretion system F domain protein [Lactobacillus crispatus 214-1] gi|290922963|gb|EFD99898.1| type II secretion system F domain protein [Lactobacillus crispatus 214-1] Length = 333 Score = 41.2 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 22/190 (11%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 MK++ + K + LD + S+ G + +++ ++ R R+ Sbjct: 1 MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASR 58 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115 G S S + ++ FS Q GNL E L +L+ + R ++ Sbjct: 59 MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K++ E + + + + F S + + +D G M++ +L+G Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163 Query: 176 IMVMRLMINF 185 + ++ Sbjct: 164 LYFFAKIVTL 173 >gi|307151679|ref|YP_003887063.1| type II secretion system F domain-containing protein [Cyanothece sp. PCC 7822] gi|306981907|gb|ADN13788.1| Type II secretion system F domain protein [Cyanothece sp. PCC 7822] Length = 404 Score = 41.2 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 15/157 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + ++ K A F F + AG+ + + V+ Q + ++ + Sbjct: 58 LNNITIKDKAVFSRQF-------SVMINAGVAIVRCLGVLSDQCGNKKLKKALAGISSEV 110 Query: 60 HLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LSE++++ + + + GG L E LA L+++L D +K + Sbjct: 111 QQGSPLSEAMAK------YPDCFDQLYVSMVEAGETGGVLDEVLARLAKLLEDMARLKNQ 164 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 +++ A + + F ++ + L Sbjct: 165 IKSAMAYPVAVGILAVIVFFAMTVFLIPVFAKIFLDL 201 >gi|87310223|ref|ZP_01092354.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM 3645] gi|87286972|gb|EAQ78875.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM 3645] Length = 401 Score = 41.2 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 59/136 (43%), Gaps = 10/136 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+P+ ++ V+ Q+S+ ++ ++ G SL E++ R + Sbjct: 70 LSSLIRSGVPLMRSLKVLREQASNVALQEILDDIVSRVEEGASLDEAMRRHPK-----AF 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S +T + GG L +AL +++ D++++K + +M A A +G + V Sbjct: 125 SEMATNMVRAGAEGGFLEDALDRVAKFTEDQEDLKGR----TMSALAYPVFLGVVGSFVL 180 Query: 142 TLVYFTSPGYMNVLIN 157 + + L Sbjct: 181 GFLLLVFVPQFDELFG 196 >gi|152966970|ref|YP_001362754.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151361487|gb|ABS04490.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 417 Score = 41.2 bits (96), Expect = 0.071, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 14/151 (9%) Query: 20 LDIIVR----SVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 L ++ R V +GL + A++++ Q+ + + V G SLS ++++ R Sbjct: 80 LALMSRQFATMVSSGLSLIRALSILAEQAESKKLAATLGEVRAEVETGASLSTTLAKHDR 139 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P +I ++GG L + L ++ +KAKV+ + Sbjct: 140 IFP----PLMINMIR-AGEVGGFLDQVLVQIADNFESEVKLKAKVK---SAMTYPVVVFI 191 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 V ++ F P + +D G + L Sbjct: 192 IAILAVVGMLLFIVP-VFTQMFSDLGGKLPL 221 >gi|330960771|gb|EGH61031.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 405 Score = 41.2 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 11/168 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A +I + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIK--KAMTYPTAVLIVAFIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 L+ P + +V N L V A ++ + +++ F V Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVVLFFV 234 >gi|95931257|ref|ZP_01313976.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM 684] gi|95132693|gb|EAT14373.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM 684] Length = 404 Score = 41.2 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +AG+P+ +A+ +V Q +P ++ +V E G SL ++++ R P Sbjct: 79 QAGVPLDEALQSVVEQVENPAQARLYTQVREEVRQGSSLFQALAEQGRSFPDLYQRMVEV 138 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAWIIGSLPFCVSTLV 144 + G L + L L+ L ++ ++ V AL+ + +G L F +S +V Sbjct: 139 G-----ENSGTLDQVLLRLADFLEEQARLRSRTVSALAYPVLMAIVGVGVLLFLLSFVV 192 >gi|260771971|ref|ZP_05880888.1| general secretion pathway protein F [Vibrio metschnikovii CIP 69.14] gi|260612838|gb|EEX38040.1| general secretion pathway protein F [Vibrio metschnikovii CIP 69.14] Length = 406 Score = 41.2 bits (96), Expect = 0.072, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 75 LSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRAKVTEGYTLADSLADYPHIFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 F ++++ + G+L L L+ +R+ M++K+ QAL + +G + F + Sbjct: 131 DLFRSMVA-AGEKSGHLDAILERLADYAENRQKMRSKLMQALLYPIVLVVFAVGIVAFLL 189 Query: 141 STLV 144 + +V Sbjct: 190 AAVV 193 >gi|71908835|ref|YP_286422.1| type II secretion system protein [Dechloromonas aromatica RCB] gi|71848456|gb|AAZ47952.1| type II secretion system protein [Dechloromonas aromatica RCB] Length = 394 Score = 41.2 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 8/140 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLS 64 K R+ KF P ++ + AGL V + + + Q SE ++ G S Sbjct: 50 KSRSGKF--QLPLFTRQLLSLLEAGLNVVEGLETLAEQDQGSGSSEVLNGLLTALRQGQS 107 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS ++ R P + + + G ++ E+L + +K K+ + ++ Sbjct: 108 LSTALQRFPEVFP----ELYVATVKASERTG-DMPESLRRYLTFDEKLRELKKKLVSAAI 162 Query: 125 EAKASAWIIGSLPFCVSTLV 144 + + F + V Sbjct: 163 YPLLLLAVGLLVTFFLLGFV 182 >gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain [Aciduliprofundum boonei T469] gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei T469] Length = 332 Score = 41.2 bits (96), Expect = 0.074, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 2/144 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHL-G 62 KKR P A++ I A + V+ + + + E + L G Sbjct: 143 AKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELSTRKEYGEIAKEAEWITRDTELLG 202 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +I R P + F + + GG L + S K + K Sbjct: 203 KDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYEKEKRLMLKKNME 262 Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146 S+ A ++ + F + +V Sbjct: 263 SLGLFAEIYVTVGVAFPLFLVVII 286 >gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440] gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440] Length = 288 Score = 41.2 bits (96), Expect = 0.075, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 13/136 (9%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRY 75 LD++ + A ++ F R+ E+ L S + + + Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCD---GWVFDRIRESLRLAQLQMHSPWDELRELADQ 212 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + E+ ++ G + E L + + LRD+ +A + + Sbjct: 213 IGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLD------ 266 Query: 136 LPFCVSTLVYFTSPGY 151 +P + V Y Sbjct: 267 IPGALLVFVLLGFATY 282 >gi|218557044|ref|YP_002389957.1| type IV pilin biogenesis protein [Escherichia coli S88] gi|218363813|emb|CAR01473.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli S88] Length = 400 Score = 40.8 bits (95), Expect = 0.075, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|253689233|ref|YP_003018423.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755811|gb|ACT13887.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 408 Score = 40.8 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + V G SL++++ Sbjct: 77 LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L E L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGETSGHLDEVLNRLADYTEQRQQMRSRIQ 170 >gi|261417704|ref|YP_003251386.1| type II secretion system protein F [Geobacillus sp. Y412MC61] gi|319767487|ref|YP_004132988.1| type II secretion system F domain protein [Geobacillus sp. Y412MC52] gi|261374161|gb|ACX76904.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC61] gi|317112353|gb|ADU94845.1| Type II secretion system F domain protein [Geobacillus sp. Y412MC52] Length = 342 Score = 40.8 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 14/151 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81 + R + G P+ A+ + Q+ R E R ++ GL L ++ + M + + Sbjct: 18 LGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALSVDRMAVN-L 76 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF+ + G+L +A L + +++ S + +++ L + Sbjct: 77 LFFA-------ERHGDLPRGMAETGETLAQKARFHEQLRRFS---RYPMFLLSLLIIMLV 126 Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170 + ++ P + + RGH +A Sbjct: 127 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 157 >gi|220927574|ref|YP_002504483.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10] gi|219997902|gb|ACL74503.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10] Length = 319 Score = 40.8 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ IK+R P +D S + + A+ S+ + RV ++ Sbjct: 148 LKYSIKQRI-------PAFIDSFRSSFVSHNRIKPALQECCSNSNKHLGRIMLRVSDS-- 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L++S+ + + + F T++ + GG L L L++ + N++ K Sbjct: 199 --SDLNDSLRAVRDRISDTWFNIFVTLLVNYRENGGELINQLYKLNKTITRYNNIEKKKN 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V L+ M + N + + + + LI + ++ Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGTNMRLYYNTAQASGKIAIYSISALIVVRIL 316 Query: 180 RLM 182 R + Sbjct: 317 RRL 319 >gi|78223072|ref|YP_384819.1| type II secretion system protein [Geobacter metallireducens GS-15] gi|78194327|gb|ABB32094.1| type II secretion system protein [Geobacter metallireducens GS-15] Length = 402 Score = 40.8 bits (95), Expect = 0.077, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++AGLP+ A+ I+ + + + V E G++LS+++ + + P Sbjct: 72 LLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFP---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G+L + L+ + ++ + + ++ ++ Sbjct: 128 HLYVASVR-AGERTGDLPLTIRRYIAFLKRVEEVRKR---FVSALVYPSILVTVATIAIA 183 Query: 142 TLVYFTSPGY 151 L+ + P + Sbjct: 184 FLLVYVVPTF 193 >gi|269959417|ref|ZP_06173800.1| General secretion pathway protein F [Vibrio harveyi 1DA3] gi|269835854|gb|EEZ89930.1| General secretion pathway protein F [Vibrio harveyi 1DA3] Length = 406 Score = 40.8 bits (95), Expect = 0.077, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 11/137 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S+ + Sbjct: 75 LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFDELYL 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ + +R+ M++K+ ++A ++ + Sbjct: 135 SMVA-----AGEKSGHLDTVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185 Query: 142 -TLVYFTSPGYMNVLIN 157 L+ P + +I Sbjct: 186 SLLLSSVVPKIIEPIIQ 202 >gi|331661478|ref|ZP_08362402.1| protein transport protein HofC [Escherichia coli TA143] gi|331061393|gb|EGI33356.1| protein transport protein HofC [Escherichia coli TA143] Length = 400 Score = 40.8 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 28/183 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P G +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLASFSGEWGWLLVLFGFLLAIANKL 233 Query: 178 VMR 180 +MR Sbjct: 234 LMR 236 >gi|283781405|ref|YP_003372160.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283439858|gb|ADB18300.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 398 Score = 40.8 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 11/158 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V G+ +S A+ I P ++ + G S +++R ++ Sbjct: 69 LAVMVETGITLSTALDSIASHEQHPTLKRVLLDLKRHVESGDDFSSALARHPQHFD---- 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++I Q G E L ++ LR + + KV A + ++ + Sbjct: 125 RTYVSLIRASEQTGTT-GEMLDTVALYLRSQLETRQKVMAALAYPAVMLAVAVAVTIFLL 183 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 T + L +G L + A M + +++ Sbjct: 184 TYILPK----FEPLF-SRKGVKLPSITVAMMTMSDLMI 216 >gi|78224556|ref|YP_386303.1| general secretion pathway protein F [Geobacter metallireducens GS-15] gi|78195811|gb|ABB33578.1| General secretion pathway protein F [Geobacter metallireducens GS-15] Length = 403 Score = 40.8 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 15/152 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V + +P+ +AV + + ++ R+ E G SL++++ E Sbjct: 73 LATLVGSQVPIFEAVTTLGEQEEPGELKKALGRIRERLAEGASLAKAL--------SLEP 124 Query: 82 SFFS---TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 FS + + G+L L L+ L +++ +++KV + +I Sbjct: 125 GLFSESYVAMVAAGEASGSLETVLEKLALFLEEQRAIRSKV---TASLAYPLLMIVVGGG 181 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + L+ F P + + ++ L+ +A Sbjct: 182 VMLFLLTFVIPKIVTIFEDNKAALPLITIALI 213 >gi|91776494|ref|YP_546250.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91710481|gb|ABE50409.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 402 Score = 40.8 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ S+P V + G SLS++ + PL Sbjct: 72 LATMMKAGVPLLQAFDIVGKGHSNPAVSKLLGDIKADVETGSSLSQAFRK----YPLYFD 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F ++ + G L L L+ +K K+++ + + + + Sbjct: 128 NLFCNLVG-AGEQAGILDSLLDRLATYKEKILAIKGKIKSALFYPISIIVVAFVITAVIM 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + D ++ +A + + Sbjct: 187 IFVIPAFKELFSSFGADLPAPTVMVMAISDFFVDYWW 223 >gi|116671913|ref|YP_832846.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24] gi|116612022|gb|ABK04746.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24] Length = 276 Score = 40.8 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + + G L++ L L+ L + +A Q KA+ ++ LP L Sbjct: 170 LAACFDIAAASGCPLADVLTRLAAQLEAEDDAEAARQTALAGPKATVTLLTWLPLLGLGL 229 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +++L+ P G L + G + ++ Sbjct: 230 GVALGVDPLSILLGTPFGMAALAAGVGLTVAGRIWSARLVR 270 >gi|300690359|ref|YP_003751354.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum PSI07] gi|299077419|emb|CBJ50045.1| type IV pilus assembly transmembrane protein [Ralstonia solanacearum PSI07] Length = 421 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 7/170 (4%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++P + Sbjct: 69 KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSLYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 ++ + + + + + V G L+ + Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGI 233 >gi|218547561|ref|YP_002381352.1| type IV pilin biogenesis protein [Escherichia fergusonii ATCC 35469] gi|218355102|emb|CAQ87709.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia fergusonii ATCC 35469] Length = 411 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 74/187 (39%), Gaps = 21/187 (11%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61 H +R+A+ + ++AGL +S+ +A++ GQ ++ + + Sbjct: 65 HWSSRRSAEVIHQL-------ATLLKAGLTLSEGLALLAGQHPSKQWQALLQTLAHELEQ 117 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +LS ++++ P + +L G L E L+R + + + KV+ Sbjct: 118 GNALSRALTQWSEVFPP-----LYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKK 172 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI---GI 176 + I+ V +++F P + + N P + GV A I G Sbjct: 173 AL---RYPLIILTLAIVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGG 229 Query: 177 MVMRLMI 183 ++M L++ Sbjct: 230 LIMALIV 236 >gi|82703025|ref|YP_412591.1| general secretion pathway protein F [Nitrosospira multiformis ATCC 25196] gi|82411090|gb|ABB75199.1| General secretion pathway protein F [Nitrosospira multiformis ATCC 25196] Length = 401 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query: 17 PNALDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71 P L+++ R + AGL V ++A ++ + +P+ E V GLSLS ++ Sbjct: 61 PEELNLLTRQMATLLTAGLTVEQSLAALIESAEEPMTREVLGGVKTEVIAGLSLSAALGS 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 R P F + + G L L +L+ L R+ +K K Sbjct: 121 YSRSFP-----DFYRALVHGGEESGTLPLVLRHLAEYLDARQTLKQK 162 >gi|78061921|ref|YP_371829.1| general secretion pathway protein F [Burkholderia sp. 383] gi|77969806|gb|ABB11185.1| General secretion pathway protein F [Burkholderia sp. 383] Length = 405 Score = 40.8 bits (95), Expect = 0.081, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L ++ A + AGLP+ ++++V+ Q+ D VR + Sbjct: 61 RKLSQREQAIITRQL-------ASLLVAGLPLDESLSVLSEQAERDYVRELMASIRAEVV 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + ++S+ R E+ + + G L L+ L+ + +K K+ Sbjct: 114 GGHSFANALSQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144 I + + + V Sbjct: 169 LAFTYPGIVTLIAFGIVTFLLSYV 192 >gi|160941846|ref|ZP_02089173.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC BAA-613] gi|158435343|gb|EDP13110.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC BAA-613] Length = 290 Score = 40.8 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 4/148 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K++ + + P + I + +++ V + +SD +R+E + G Sbjct: 137 RLKEKRDRVEQELPRFVATIEQDLKSSRDVLSILENFKKNTSDTLRAELDILTADMRSG- 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R M +S + + G + + LS + + + K +A Sbjct: 196 SYEAALTRFEARMNSPMLSDVVRGL-IGVLRGDDSAAYFQLLSHDFKQLEMQRLKKEAQK 254 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + K I L + Y GY Sbjct: 255 IPPKI--RIFSFLMLLCFLMTYLAIIGY 280 >gi|83749807|ref|ZP_00946779.1| PilC [Ralstonia solanacearum UW551] gi|207744384|ref|YP_002260776.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609] gi|83723518|gb|EAP70724.1| PilC [Ralstonia solanacearum UW551] gi|206595789|emb|CAQ62716.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609] Length = 421 Score = 40.8 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++P + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ F P + NV Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216 >gi|207721487|ref|YP_002251927.1| fimbrial assembly protein [Ralstonia solanacearum MolK2] gi|206586647|emb|CAQ17233.1| fimbrial assembly protein [Ralstonia solanacearum MolK2] Length = 421 Score = 40.8 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 K R K D + ++AG+P+ +V +I ++P + Sbjct: 69 KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S++++ R +Y + + GG L L LS + +KA++ Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ F P + NV Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216 >gi|163802238|ref|ZP_02196133.1| general secretion pathway protein F [Vibrio sp. AND4] gi|159174043|gb|EDP58853.1| general secretion pathway protein F [Vibrio sp. AND4] Length = 406 Score = 40.8 bits (95), Expect = 0.084, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L +S+ + Sbjct: 75 LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLGDSLGDYPHVFDELYL 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ + +R+ M++K+ ++A ++ + Sbjct: 135 SMVA-----AGEKSGHLDAVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 TL+ Sbjct: 186 TLLL 189 >gi|104783622|ref|YP_610120.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48] gi|95112609|emb|CAK17337.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48] Length = 402 Score = 40.8 bits (95), Expect = 0.085, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75 P + + AG+P+ A V+ + D + R+ + GL L+E++ R + Sbjct: 66 PGFSRQLATLLTAGVPLLQAFEVMARSTVDSGMAVLLARLKQDVAAGLGLAEALQRHPAW 125 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + ++ V Q G L L ++ +L R+ ++ KV+ Sbjct: 126 FD----ALYCNLVRVGEQSG-TLDRQLEQMAGMLEKRQALRQKVRK 166 >gi|90414687|ref|ZP_01222658.1| putative general secretion pathway protein F [Photobacterium profundum 3TCK] gi|90324229|gb|EAS40804.1| putative general secretion pathway protein F [Photobacterium profundum 3TCK] Length = 410 Score = 40.8 bits (95), Expect = 0.085, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ + + + Q+ P +R+ V G +LS+S++ Sbjct: 79 LATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLSDSMAEYPHI-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K+Q + + ++ V+ Sbjct: 134 DQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYPTMLTLVAVAV---VA 190 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P ++ + G L + + V Sbjct: 191 FLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225 >gi|292489326|ref|YP_003532213.1| type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430] gi|292898450|ref|YP_003537819.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291198298|emb|CBJ45404.1| protein transport protein [Erwinia amylovora ATCC 49946] gi|291554760|emb|CBA22553.1| Type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430] gi|312173491|emb|CBX81745.1| Type IV pilus assembly protein tapC [Erwinia amylovora ATCC BAA-2158] Length = 399 Score = 40.8 bits (95), Expect = 0.086, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + ++AG+P+ + ++ + ++ + + G S+++ P Sbjct: 64 FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDVFP 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + +L G L E L+ ++ ++ KVQ + I+ Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQDKQQLLRQKVQKAL---RYPLVIMAVAL 175 Query: 138 FCVSTLVYFTSPGYMNVL 155 ++ F P ++ + Sbjct: 176 LVSIGMLVFVLPEFVAIY 193 >gi|303239931|ref|ZP_07326454.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302592641|gb|EFL62366.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 404 Score = 40.8 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%) Query: 29 AGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+ + ++ ++ Q+ + + + +V E G+SLSE++ + E Sbjct: 78 AGVTIIGSLDLLRRQTENRKLANILSKVYEDVQKGMSLSEAMK-----VHKSEFPTIVIS 132 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + ++ GNL L L+ L +K K++ + KA I G V ++ F Sbjct: 133 MIEIGEISGNLDTVLDRLATYLEKDNKVKQKIKTSMVYPKA---IGGIAIVAVIFMMIFV 189 Query: 148 SPGYMNVL 155 P ++ + Sbjct: 190 VPNFITMF 197 >gi|88799609|ref|ZP_01115185.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] gi|88777694|gb|EAR08893.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] Length = 410 Score = 40.8 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 13/180 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60 + +KR +DD + R+G+P+ A+ + + PV SE R V + Sbjct: 61 RIFARKRVN--IDDLIMFSRQMYALTRSGIPLIRAINGLADATRSPVLSEVLREVTRSLT 118 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L+ S R F ++ + + G L A L L K+ + K+ Sbjct: 119 QGTNLANSFRAHPRVFG----DLFVAMVRM-GESTGRLDSAFKQLIDHLELEKDTRKKIA 173 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + + + + + + + + P + N+ G L + ++R Sbjct: 174 SAT---RYPIIVTVFIFVALFVVNLWVVPEFSNIF--SKLGADLPLPTVILITTSNFMLR 228 >gi|113869483|ref|YP_727972.1| general secretion pathway protein F [Ralstonia eutropha H16] gi|113528259|emb|CAJ94604.1| general secretion pathway protein F [Ralstonia eutropha H16] Length = 405 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 16/170 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 + L + A F + AGLP+ +A+ + Q+ V + Sbjct: 61 RKLSTQEQALFTRQL-------ASLIVAGLPLDEALGALADQAERAYVHELLAGIRAEVM 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS ++++ R + + + G+L L L+ + R + +K++ Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNTLTSKIR 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 + ++ V L+ + P ++V N + +L + Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPMLTIIML 215 >gi|91209168|ref|YP_539154.1| type IV pilin biogenesis protein [Escherichia coli UTI89] gi|117622389|ref|YP_851302.1| type IV pilin biogenesis protein [Escherichia coli APEC O1] gi|237704253|ref|ZP_04534734.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA] gi|91070742|gb|ABE05623.1| protein transport protein HofC [Escherichia coli UTI89] gi|115511513|gb|ABI99587.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli APEC O1] gi|226902165|gb|EEH88424.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA] gi|294490593|gb|ADE89349.1| type IV pilus assembly protein PilC [Escherichia coli IHE3034] gi|307629677|gb|ADN73981.1| type IV pilin biogenesis protein [Escherichia coli UM146] gi|315285150|gb|EFU44595.1| type II secretion system F domain protein [Escherichia coli MS 110-3] gi|323950900|gb|EGB46777.1| type II secretion system protein F [Escherichia coli H252] gi|323955302|gb|EGB51075.1| type II secretion system protein F [Escherichia coli H263] Length = 400 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514] gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514] Length = 403 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70 F LD AGL + ++ + Q+++ V R + V G S SE++ Sbjct: 66 FTRQLATMLD-------AGLAMVQSLQALAEQTTNKVMRDVIKDVTARVEAGDSFSEALV 118 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + + GG LSE LA L+ L + ++ KV++ M Sbjct: 119 KHPKV-----FNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSAMMYPTVVT 173 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 + S+ + V Sbjct: 174 CVAISITIFLMVKVVPVFGEIFESF 198 >gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649] gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649] Length = 204 Score = 40.8 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 11/140 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 +AL + ++R+GL +A+ + V + R V G + S + + Sbjct: 67 DALVLCALALRSGLGPIEALEAVADHVGGAVARQLRVVASAHRWGQDAATSWAHVGEAWR 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +++ Q G + +L + M+ + + A A ++ LP Sbjct: 127 PAALAW-----QAAEQSGAAPAGV------VLAAAERMRREEASRVEAAVQRAGVLLVLP 175 Query: 138 FCVSTLVYFTSPGYMNVLIN 157 L F + V+++ Sbjct: 176 LGACFLPGFVGTTVVPVVLH 195 >gi|218290591|ref|ZP_03494693.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus acidocaldarius LAA1] gi|218239375|gb|EED06572.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus acidocaldarius LAA1] Length = 268 Score = 40.8 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 7 KRTAKFLDDFPNAL----DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ +F DD L ++V G+ D + ++V + +R R + Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMVSLYERGIAPEDMLPLLVSATDGALRQLLERAYQRMQTT 167 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119 +L+++++ M + L E+ ++V + G +L L ++ R + N++ + Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLQQMAVDERAQFLFNLEKRA 227 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + M A +LP + + Sbjct: 228 ERKKMSVLIEAIAFIALPTIFLVGILILMRAW 259 >gi|119897093|ref|YP_932306.1| general secretion pathway protein F [Azoarcus sp. BH72] gi|119669506|emb|CAL93419.1| general secretion pathway protein F [Azoarcus sp. BH72] Length = 401 Score = 40.8 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 8/142 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG+P+ +A+ + ++ P + + G +LS++ Sbjct: 61 RELGAFCAQLAHLLEAGIPLVEALRDLGEGNATPAARPWDDIATALEGGDTLSDAC---A 117 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L + F S + + G L L +L+ L + A ++ +S+ A+++ Sbjct: 118 ARADLFDEVFVS--LLRAGEQAGRLPAVLHHLAATLERSAQVAAHLRRMSI---YPAFVL 172 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 L T + F P ++ Sbjct: 173 AVLAVAAGTALVFVVPQLSSLF 194 >gi|51246634|ref|YP_066518.1| type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila LSv54] gi|50877671|emb|CAG37511.1| probable type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila LSv54] Length = 401 Score = 40.8 bits (95), Expect = 0.089, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AGLP+ + ++ Q +P + ++ G +L++S+ + + Sbjct: 71 MLSTMIDAGLPLVQGIEILEQQQENPTFKKAIGKIKGDVESGTTLADSMRKHPKIFD--- 127 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F+ +I + GG L L L+ + +K K++ Sbjct: 128 -KLFTNMIE-AGETGGILDTILQRLAAFMEKSMALKKKIKG 166 >gi|119472644|ref|ZP_01614635.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium TW-7] gi|119444848|gb|EAW26149.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium TW-7] Length = 409 Score = 40.8 bits (95), Expect = 0.091, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 11/166 (6%) Query: 23 IVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ A+ +I G ++ V + + G LS+++ + RY Sbjct: 79 IATMLMAGVPLIQAIEMIGTGSTNKSVGKLMETIGDEVKAGQPLSQALRKHPRY-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L + ++ + +K+K++ ++ S Sbjct: 134 DDLYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKK---AMFYPISVLVIAGIVTS 190 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L+ F P + ++ L V + ++I Sbjct: 191 ILLIFVVPQFQDIFSGFGAELPAFTLFVIGISEFMQAYWWMILIAI 236 >gi|26990137|ref|NP_745562.1| type II secretion system protein [Pseudomonas putida KT2440] gi|24985071|gb|AAN69026.1|AE016534_9 type II secretion pathway protein XcpS [Pseudomonas putida KT2440] Length = 403 Score = 40.8 bits (95), Expect = 0.091, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ + +R A F + + AGLP+ DA+ + +S R ++ Sbjct: 54 LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 111 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS+++ + R P + S+ G L +AL R R ++ + Sbjct: 112 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 165 Query: 120 QALSM 124 + Sbjct: 166 LVGAS 170 >gi|148979562|ref|ZP_01815593.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium SWAT-3] gi|145961746|gb|EDK27042.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium SWAT-3] Length = 409 Score = 40.8 bits (95), Expect = 0.092, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S + + G +S+++ + Sbjct: 78 LATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAM-----RTASRHF 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + +L GNL++ L+ + +K+KV + A ++ Sbjct: 133 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALI---YPAMVVTVALTVSY 189 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 190 LMLTMVIPEFESMF 203 >gi|302535289|ref|ZP_07287631.1| predicted protein [Streptomyces sp. C] gi|302444184|gb|EFL16000.1| predicted protein [Streptomyces sp. C] Length = 306 Score = 40.8 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 1/155 (0%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G ++ A+ P +E V+ G ++ ++ + R + ++ + Sbjct: 149 GRALTVAIRRTAAGPGGPGAAETG-VLAAAAFGGDVAGALHQAAREPGARGLAGMAACWR 207 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V G L+ L L LR ++ + ++A A+++ ++ LP + Sbjct: 208 VSVDGGAGLAAGLDRLEGALRAERDREESLRAQLAGARSTTVVLALLPLVGLLMGTALGA 267 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + VL++ P G L +G++ R ++ Sbjct: 268 DPLRVLLHSPVGWGCLLAGGLLETLGLLWCRRIVR 302 >gi|229521805|ref|ZP_04411223.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80] gi|229341399|gb|EEO06403.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80] gi|327485200|gb|AEA79607.1| General secretion pathway protein F [Vibrio cholerae LMA3894-4] Length = 406 Score = 40.8 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|330900576|gb|EGH31995.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 231 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium sticklandii DSM 519] gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium sticklandii] Length = 405 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 9/133 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+S+A+ V+ Q+ + +R + V GL LS+++ + + P + Sbjct: 79 LNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKHKKVFP----NLLI 134 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 T++ ++ GNL LA +S + +K++ A + + V L+ Sbjct: 135 TMVE-AGEMTGNLDNVLAKMSEHYEKENKINSKIKG---AMVYPAILSVAAVGVVIFLLT 190 Query: 146 FTSPGYMNVLIND 158 F P + + + Sbjct: 191 FIMPTFTEMFTSS 203 >gi|257485376|ref|ZP_05639417.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|218288158|ref|ZP_03492457.1| type II secretion system protein [Alicyclobacillus acidocaldarius LAA1] gi|218241517|gb|EED08690.1| type II secretion system protein [Alicyclobacillus acidocaldarius LAA1] Length = 412 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 +DF VRAG+P+ A+ V+ Q P++ V G +L ES++ Sbjct: 68 EDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVGEVAAKVEGGTALWESLAEY 127 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P F ++ + G+L E L + +R + + V + A + Sbjct: 128 PKVFP----PMFVQMVR-AGEASGSLEEVLESTARF---EEGQRETVSKIKSALMYPALV 179 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 L+ P +++V Sbjct: 180 SLMSVLVAGFLMINVIPSFVSVF 202 >gi|156972925|ref|YP_001443832.1| general secretion pathway protein F [Vibrio harveyi ATCC BAA-1116] gi|156524519|gb|ABU69605.1| hypothetical protein VIBHAR_00603 [Vibrio harveyi ATCC BAA-1116] Length = 406 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S+ + Sbjct: 75 LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFDELYL 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G+L L L+ + +R+ M++K+ ++A ++ + Sbjct: 135 SMVA-----AGEKSGHLDTVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 +L+ Sbjct: 186 SLLL 189 >gi|26246040|ref|NP_752079.1| type IV pilin biogenesis protein [Escherichia coli CFT073] gi|227884991|ref|ZP_04002796.1| type IV pilin biogenesis protein [Escherichia coli 83972] gi|300938499|ref|ZP_07153239.1| type II secretion system F domain protein [Escherichia coli MS 21-1] gi|300993822|ref|ZP_07180562.1| type II secretion system F domain protein [Escherichia coli MS 45-1] gi|301050002|ref|ZP_07196918.1| type II secretion system F domain protein [Escherichia coli MS 185-1] gi|26106437|gb|AAN78623.1|AE016755_123 Protein transport protein hofC [Escherichia coli CFT073] gi|227838129|gb|EEJ48595.1| type IV pilin biogenesis protein [Escherichia coli 83972] gi|300298275|gb|EFJ54660.1| type II secretion system F domain protein [Escherichia coli MS 185-1] gi|300406462|gb|EFJ90000.1| type II secretion system F domain protein [Escherichia coli MS 45-1] gi|300456568|gb|EFK20061.1| type II secretion system F domain protein [Escherichia coli MS 21-1] gi|307551950|gb|ADN44725.1| protein transport protein HofC [Escherichia coli ABU 83972] gi|315294670|gb|EFU54017.1| type II secretion system F domain protein [Escherichia coli MS 153-1] gi|323190214|gb|EFZ75490.1| bacterial type II secretion system protein F domain protein [Escherichia coli RN587/1] Length = 400 Score = 40.8 bits (95), Expect = 0.095, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|229513659|ref|ZP_04403123.1| general secretion pathway protein F [Vibrio cholerae TMA 21] gi|229349536|gb|EEO14492.1| general secretion pathway protein F [Vibrio cholerae TMA 21] Length = 406 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|85858125|ref|YP_460328.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] gi|85721216|gb|ABC76159.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] Length = 403 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 6/144 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71 I + +GLP+ + ++ +++ + E G SL++++ + Sbjct: 62 EKQIVVFARIFSTMINSGLPLIQCLDLLAQQETNKTFAKAITAIKEDIEGGSSLTDALKK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 F +I+ + GG L L LS + +K KV+ + Sbjct: 122 YPEIFD----ELFVNLIA-AGESGGILDVILGRLSTYMEKAMKLKRKVKGALTYPISVLV 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 I + + V + Sbjct: 177 ISIGVVTLLLLKVIPVFQKLFADM 200 >gi|121586625|ref|ZP_01676410.1| general secretion pathway protein F [Vibrio cholerae 2740-80] gi|153212531|ref|ZP_01948278.1| general secretion pathway protein F [Vibrio cholerae 1587] gi|153802195|ref|ZP_01956781.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|153802931|ref|ZP_01957517.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|153825519|ref|ZP_01978186.1| general secretion pathway protein F [Vibrio cholerae MZO-2] gi|153828358|ref|ZP_01981025.1| general secretion pathway protein F [Vibrio cholerae 623-39] gi|229527343|ref|ZP_04416735.1| general secretion pathway protein F [Vibrio cholerae 12129(1)] gi|254225448|ref|ZP_04919059.1| general secretion pathway protein F [Vibrio cholerae V51] gi|254285926|ref|ZP_04960888.1| general secretion pathway protein F [Vibrio cholerae AM-19226] gi|297581571|ref|ZP_06943494.1| general secretion pathway protein F [Vibrio cholerae RC385] gi|121549184|gb|EAX59217.1| general secretion pathway protein F [Vibrio cholerae 2740-80] gi|124116402|gb|EAY35222.1| general secretion pathway protein F [Vibrio cholerae 1587] gi|124121544|gb|EAY40287.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|124122269|gb|EAY41012.1| general secretion pathway protein F [Vibrio cholerae MZO-3] gi|125622082|gb|EAZ50405.1| general secretion pathway protein F [Vibrio cholerae V51] gi|148876188|gb|EDL74323.1| general secretion pathway protein F [Vibrio cholerae 623-39] gi|149740804|gb|EDM54895.1| general secretion pathway protein F [Vibrio cholerae MZO-2] gi|150424108|gb|EDN16047.1| general secretion pathway protein F [Vibrio cholerae AM-19226] gi|229334975|gb|EEO00460.1| general secretion pathway protein F [Vibrio cholerae 12129(1)] gi|297534409|gb|EFH73247.1| general secretion pathway protein F [Vibrio cholerae RC385] Length = 406 Score = 40.8 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|15642725|ref|NP_232358.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726690|ref|ZP_01679915.1| general secretion pathway protein F [Vibrio cholerae V52] gi|147675103|ref|YP_001218219.1| general secretion pathway protein F [Vibrio cholerae O395] gi|153817446|ref|ZP_01970113.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457] gi|153821264|ref|ZP_01973931.1| general secretion pathway protein F [Vibrio cholerae B33] gi|227082845|ref|YP_002811396.1| general secretion pathway protein F [Vibrio cholerae M66-2] gi|229507221|ref|ZP_04396726.1| general secretion pathway protein F [Vibrio cholerae BX 330286] gi|229509858|ref|ZP_04399339.1| general secretion pathway protein F [Vibrio cholerae B33] gi|229516979|ref|ZP_04406425.1| general secretion pathway protein F [Vibrio cholerae RC9] gi|229606727|ref|YP_002877375.1| general secretion pathway protein F [Vibrio cholerae MJ-1236] gi|254851268|ref|ZP_05240618.1| general secretion pathway protein F [Vibrio cholerae MO10] gi|255744311|ref|ZP_05418263.1| general secretion pathway protein F [Vibrio cholera CIRS 101] gi|262158579|ref|ZP_06029694.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1] gi|262170028|ref|ZP_06037717.1| general secretion pathway protein F [Vibrio cholerae RC27] gi|298500454|ref|ZP_07010258.1| general secretion pathway protein F [Vibrio cholerae MAK 757] gi|1170056|sp|P45780|GSPF_VIBCH RecName: Full=General secretion pathway protein F; AltName: Full=Cholera toxin secretion protein epsF gi|609627|gb|AAA58787.1| EpsF [Vibrio cholerae] gi|9657329|gb|AAF95871.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630851|gb|EAX63233.1| general secretion pathway protein F [Vibrio cholerae V52] gi|126512032|gb|EAZ74626.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457] gi|126521196|gb|EAZ78419.1| general secretion pathway protein F [Vibrio cholerae B33] gi|146316986|gb|ABQ21525.1| general secretion pathway protein F [Vibrio cholerae O395] gi|227010733|gb|ACP06945.1| general secretion pathway protein F [Vibrio cholerae M66-2] gi|227014617|gb|ACP10827.1| general secretion pathway protein F [Vibrio cholerae O395] gi|229346042|gb|EEO11014.1| general secretion pathway protein F [Vibrio cholerae RC9] gi|229353332|gb|EEO18271.1| general secretion pathway protein F [Vibrio cholerae B33] gi|229354726|gb|EEO19647.1| general secretion pathway protein F [Vibrio cholerae BX 330286] gi|229369382|gb|ACQ59805.1| general secretion pathway protein F [Vibrio cholerae MJ-1236] gi|254846973|gb|EET25387.1| general secretion pathway protein F [Vibrio cholerae MO10] gi|255737836|gb|EET93229.1| general secretion pathway protein F [Vibrio cholera CIRS 101] gi|262021436|gb|EEY40148.1| general secretion pathway protein F [Vibrio cholerae RC27] gi|262029740|gb|EEY48389.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1] gi|297540623|gb|EFH76680.1| general secretion pathway protein F [Vibrio cholerae MAK 757] Length = 406 Score = 40.8 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|291529647|emb|CBK95233.1| Bacterial type II secretion system protein F domain [Eubacterium rectale M104/1] Length = 288 Score = 40.8 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+L +S+ +++ + ++ + G ++ L ++S+ + D ++ + + + Sbjct: 192 LTLEDSVELFNARFNNEQIDNLTVILRQSLRTG-QIANMLDDVSKQIEDINKLRTEQEKI 250 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 M+ + I + ++Y T + +L Sbjct: 251 KMQRQTKMMNIAFFVGISALIIYITGYQLVELL 283 >gi|108804005|ref|YP_643942.1| type II secretion system protein [Rubrobacter xylanophilus DSM 9941] gi|108765248|gb|ABG04130.1| type II secretion system protein [Rubrobacter xylanophilus DSM 9941] Length = 403 Score = 40.8 bits (95), Expect = 0.098, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 10/150 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ A+ ++ Q+++ +R +V G++LSE++ R Sbjct: 71 LSTMINAGLPIVRALHILEEQTANKKLRDVIVKVRSDVEAGMALSEALERHPEVFG---- 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ ++GG L L ++ L + ++ K+++ + Sbjct: 127 RLYVEMVR-AGEVGGVLDRVLLRVASQLEKDQELRRKIKSALAYPAVVLVAAVLAAAFML 185 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + + D G + L A Sbjct: 186 IFIVPI----FARMFEDLGGTLPLPTRIAM 211 >gi|260775491|ref|ZP_05884388.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC BAA-450] gi|260608672|gb|EEX34837.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC BAA-450] Length = 378 Score = 40.4 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 17/157 (10%) Query: 1 MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58 MKH IK +F + + +GL ++ ++ +I + ++S + + Sbjct: 31 MKHRIKASDITRFTRQW-------STMLMSGLNITTSLKLIAKNTHCAEMKSVLWLIQQQ 83 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G S+S+S+ + RY + ++ V Q G LSE+L ++ + +KAK Sbjct: 84 LQSGQSVSQSLKQSSRYFDC----LYLDIVRVGEQTG-RLSESLERIASYREKSEQLKAK 138 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V L S ++ +L L P + ++ Sbjct: 139 V--LRAAIYPSIVVMTALIVAFLMLTQVI-PEFESMF 172 >gi|256027601|ref|ZP_05441435.1| general secretion pathway protein F [Fusobacterium sp. D11] gi|289765560|ref|ZP_06524938.1| general secretion pathway protein F [Fusobacterium sp. D11] gi|289717115|gb|EFD81127.1| general secretion pathway protein F [Fusobacterium sp. D11] Length = 346 Score = 40.4 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + + + +++ + G S+ E+ + + Sbjct: 15 LAIMLKSGLTFTAAIEIILREEKEKNFKEVLKKIHKNLIAGKSIFETFKNFDKIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++SR L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSITERLEDISRSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|121593228|ref|YP_985124.1| type II secretion system protein [Acidovorax sp. JS42] gi|120605308|gb|ABM41048.1| type II secretion system protein [Acidovorax sp. JS42] Length = 405 Score = 40.4 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ +++P V + G SL+ + + P+ Sbjct: 75 MATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRK----YPMY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPISVIIVAFVVVTIIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L +A + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWL 227 >gi|34762869|ref|ZP_00143853.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887477|gb|EAA24563.1| General secretion pathway protein F [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 346 Score = 40.4 bits (94), Expect = 0.099, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + D + +++ + G S+ ES R + Sbjct: 15 LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ G+++E L ++S+ L ++ + + + +I V+ Sbjct: 75 YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFTIVT 126 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ F P ++ + + L+ F+ Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157 >gi|319795465|ref|YP_004157105.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315597928|gb|ADU38994.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 410 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ ++ V + G SLS + + +Y Sbjct: 80 LATMMKAGVPLLQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKY-----F 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L + L L+ + + +K+K+++ M + + + + Sbjct: 135 DNLYCNLVEAGEAAGILEDLLDRLATYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIM 194 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L +A + + + Sbjct: 195 IFVIPVFKEVFTSFGADLPAPTLFVMAMSEFFVSYWWL 232 >gi|291612967|ref|YP_003523124.1| general secretion pathway protein F [Sideroxydans lithotrophicus ES-1] gi|291583079|gb|ADE10737.1| general secretion pathway protein F [Sideroxydans lithotrophicus ES-1] Length = 407 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + AGLP+ A+AV++ Q +P +R + G +L+ ++ + Sbjct: 73 MLRQFATLLEAGLPLEQALAVLIEQGDNPAMRQVLATMRSEVLAGNTLARAMEK--HRDT 130 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 E+ + + G L+ + L+ ++ ++ K+ Sbjct: 131 FPEIH---RALINAGEESGELATVMDRLATYSEGQQALQQKI 169 >gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM 45100] Length = 377 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 10/191 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ +R + +F + + R +AG DAV D + + +++ Sbjct: 26 LRDKRTRRKIELEREF---IGAVSRESQAGARPEDAVLAAAQFVDDEAIANGALQLVARY 82 Query: 60 HLGLSLS-ESISRMVR-----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 L + + + + + +F + + ++ G LS + + Sbjct: 83 RLSIQGDKDVAADAGEGAEHGSSTQRNLGYFCQLWGIATERGIPLSVLAEAYACDIDAAL 142 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + K ++ A+ + ++ +LP L G + +P G +L+ V + Sbjct: 143 ERREKYESAMAGARLTVTVLLALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGC 202 Query: 174 IGIMVMRLMIN 184 G+ + Sbjct: 203 AGVQWTEFLTR 213 >gi|283851908|ref|ZP_06369184.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572632|gb|EFC20616.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 405 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GL +S ++A++ QS R + E G + SE+++ R E Sbjct: 75 LASLLGSGLTLSRSLALLARQSEAKRARGVIDALGEKLRSGATFSEALAAFPR-----EF 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG + EA L+ I + + AK + A++ ++ V Sbjct: 130 DALYVAMIRAGEAGGRMEEAAERLAGIREASEEIAAKFK---SALIYPAFMFLAMSGAVI 186 Query: 142 TLVYFTSPGY 151 LV F P + Sbjct: 187 VLVTFVVPRF 196 >gi|298528955|ref|ZP_07016358.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510391|gb|EFI34294.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 401 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 17/151 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F F + AG+P+ A+ V+ Q+ + +R + V G SL +S+ Sbjct: 67 FSRQF-------ATLINAGVPILQALQVMCDQTENKILRRKLYEVKNDIEGGSSLYDSLK 119 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + T + + GG L L L+R + +KA+V+ Sbjct: 120 KHPDV-----FDDLYTNMVDAGEAGGVLDLVLDRLARYIEKAARLKARVK---SALIYPG 171 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 II ++ ++ F P + D G Sbjct: 172 VIITVAVAVIAIILIFVIPT-FEDMFADFGG 201 >gi|138896194|ref|YP_001126647.1| PilC II secretion system protein [Geobacillus thermodenitrificans NG80-2] gi|134267707|gb|ABO67902.1| PilC, bacterial type II secretion system protein [Geobacillus thermodenitrificans NG80-2] Length = 403 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L VRAG+ + D+V ++ Q+ + + ++ G LS + +R R P Sbjct: 68 FLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA------- 130 F ++ + G L E L L+ + K+ + A A Sbjct: 128 S----LFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAIIATAVV 182 Query: 131 --WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ +P V F + P ++ A +++G+ V+ Sbjct: 183 IFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVL 235 >gi|83592054|ref|YP_425806.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC 11170] gi|83574968|gb|ABC21519.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC 11170] Length = 346 Score = 40.4 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 Q+ ++ ++ +L ++L + +LRDR +A+ + K + LP Sbjct: 241 QDREILGAALATFTRYVEDL-DSLREQAALLRDRIQQRAQQRINRSIYKMTLLAGIFLPL 299 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 T + + G M P G +L + IG + Sbjct: 300 TFFTGLLGVNLGGMPGA-QSPFGFWILVGLLVALAIGEFL 338 >gi|320197443|gb|EFW72057.1| Type IV fimbrial assembly protein PilC [Escherichia coli WV_060327] Length = 400 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|229524709|ref|ZP_04414114.1| general secretion pathway protein F [Vibrio cholerae bv. albensis VL426] gi|229338290|gb|EEO03307.1| general secretion pathway protein F [Vibrio cholerae bv. albensis VL426] Length = 406 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 75 LSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 + Sbjct: 186 AFLL 189 >gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1] gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2] gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1] gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2] Length = 399 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + +A+ ++ Q+ FR+VI L + +S++ R + Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQTV--FSKRFRKVILEIALSVETGDSLAEAFRKTGV 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GG L L + K ++ +V++ +++ Sbjct: 123 --FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMA---YPLFVLFFAVV 177 Query: 139 CVSTLVYFTSPGYMNVL 155 V + ++ P + Sbjct: 178 IVLVISFYILPNLVRAF 194 >gi|222109982|ref|YP_002552246.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221729426|gb|ACM32246.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 405 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ +++P V + G SL+ + + P+ Sbjct: 75 MATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRK----YPMY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPISVIIVAFVVVTIIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L +A + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWL 227 >gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila RKU-10] gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila RKU-10] Length = 399 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + +A+ ++ Q+ FR+VI L + +S++ R + Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQTV--FSKRFRKVILEIALSVETGDSLAEAFRKTGV 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GG L L + K ++ +V++ +++ Sbjct: 123 --FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMA---YPLFVLFFAVV 177 Query: 139 CVSTLVYFTSPGYMNVL 155 V + ++ P + Sbjct: 178 IVLVISFYILPNLVRAF 194 >gi|166363152|ref|YP_001655425.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843] gi|166085525|dbj|BAG00233.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843] Length = 404 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + AG+ + + V+ Q + ++ + + G LSE++++ E+ Sbjct: 74 SVMINAGVAIVRCLGVLGDQCGNLKMKKALQAISAEVQQGTPLSEAMAKHPE--CFDELY 131 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + GG L E L LS++L D +K ++++ A + + F ++ Sbjct: 132 ---VSMVEAGETGGVLDEVLNRLSKLLEDMARLKNQIKSAMTYPVAVGILAVIVFFGMTI 188 Query: 143 LVYFTSPGYMNVL 155 + L Sbjct: 189 FLIPVFAKIFTDL 201 >gi|254785262|ref|YP_003072690.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901] gi|237684077|gb|ACR11341.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901] Length = 409 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +AG+P++ + + R V E G+SLS ++ + + F Sbjct: 80 TKAGIPLTRGIRGLAASVRHEHFREVLNDVAEKLETGMSLSRAMRQHPKVFDS----LFV 135 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++I+V + G L E + L + + +V+ + ++++ +L + Sbjct: 136 SMINV-GESSGKLDEIFRQIGFYLERDEETRKRVK---SAMRYPSFVVVALVIAFVVINI 191 Query: 146 FTSPGYMNVL 155 + P + + Sbjct: 192 YVIPPFAKMF 201 >gi|196250150|ref|ZP_03148844.1| type II secretion system protein [Geobacillus sp. G11MC16] gi|196210334|gb|EDY05099.1| type II secretion system protein [Geobacillus sp. G11MC16] Length = 403 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L VRAG+ + D+V ++ Q+ + + ++ G LS + +R R P Sbjct: 68 FLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA------- 130 F ++ + G L E L L+ + K+ + A A Sbjct: 128 S----LFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAIIATAVV 182 Query: 131 --WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ +P V F + P ++ A +++G+ V+ Sbjct: 183 IFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVL 235 >gi|83858598|ref|ZP_00952120.1| General secretion pathway protein F [Oceanicaulis alexandrii HTCC2633] gi|83853421|gb|EAP91273.1| General secretion pathway protein F [Oceanicaulis alexandrii HTCC2633] Length = 399 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 11/164 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 ++ L R + + +D + +AG+P+ A+ V+ G++ P V R + + Sbjct: 49 LRFLDSARPGRLE--LADFMDDLAALHKAGVPLRRALDVLSGEAVTPRVARLARLMADRL 106 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G LS + + + ++ +L G L L +++LR + ++ Sbjct: 107 DAGAELSAA-----ARVDDANDIQLAAELAKAGELSGELELTLRAGAKVLRSQAEFVKRL 161 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 ++ ++++ F V L P +L G Sbjct: 162 RSAMA---YPSFLLVLSLFAVIALSLVAGPALEPLLAETTNGKA 202 >gi|326331491|ref|ZP_08197781.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] gi|325950747|gb|EGD42797.1| putative integral membrane protein [Nocardioidaceae bacterium Broad-1] Length = 300 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 10/158 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60 KK +F ++++ G V ++ + F R+ E Sbjct: 149 AKKARLEFTRALGAYIEMVALERNTGSGVRQSMEAAANVCT---SWVFTRLSEELTRSRW 205 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL +++ + + L E+ F+ ++ + + G ++ L S +R + Sbjct: 206 SGLPPWDALHALGVELGLPELDDFADIMRLSGEEGASVYATLRARSNAMRTAMLNDELTE 265 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A + + S I S V + +P + +++ Sbjct: 266 ANATGERMS---IPSSLLGVVFMGLLLAPALLRMVMPT 300 >gi|323935156|gb|EGB31523.1| bacterial type II secretion system protein F containing protein [Escherichia coli E1520] Length = 400 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCVELARQQKAQHQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|110640317|ref|YP_668045.1| type IV pilin biogenesis protein [Escherichia coli 536] gi|215485270|ref|YP_002327701.1| type IV pilin biogenesis protein [Escherichia coli O127:H6 str. E2348/69] gi|300984526|ref|ZP_07177018.1| type II secretion system F domain protein [Escherichia coli MS 200-1] gi|312966234|ref|ZP_07780460.1| bacterial type II secretion system F domain protein [Escherichia coli 2362-75] gi|331645215|ref|ZP_08346326.1| protein transport protein HofC [Escherichia coli M605] gi|331661150|ref|ZP_08362082.1| protein transport protein HofC [Escherichia coli TA206] gi|110341909|gb|ABG68146.1| bacterial type II secretion system protein F [Escherichia coli 536] gi|215263342|emb|CAS07657.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli O127:H6 str. E2348/69] gi|281177324|dbj|BAI53654.1| conserved hypothetical protein [Escherichia coli SE15] gi|300306695|gb|EFJ61215.1| type II secretion system F domain protein [Escherichia coli MS 200-1] gi|312289477|gb|EFR17371.1| bacterial type II secretion system F domain protein [Escherichia coli 2362-75] gi|315299995|gb|EFU59233.1| type II secretion system F domain protein [Escherichia coli MS 16-3] gi|324012267|gb|EGB81486.1| type II secretion system F domain protein [Escherichia coli MS 60-1] gi|330909949|gb|EGH38459.1| type 4 fimbrial assembly protein PilC [Escherichia coli AA86] gi|331045972|gb|EGI18091.1| protein transport protein HofC [Escherichia coli M605] gi|331052192|gb|EGI24231.1| protein transport protein HofC [Escherichia coli TA206] Length = 400 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|116747569|ref|YP_844256.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116696633|gb|ABK15821.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 405 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 14/158 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F+ F +D AGLP+ + ++ Q + S F+R+I+ + ++S Sbjct: 68 FVRQFSTMID-------AGLPLVQCLEILQEQQEN---STFKRIIKKVKKDVEEGATLSD 117 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +R P + + ++GG L L L+ + +K +V+ A Sbjct: 118 AIRKHP-KVFDNLFVNLVAAGEVGGILDVILNRLAAYIEKVAKLKRRVKGAMT---YPAI 173 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 ++ V+ ++ + P + + + +A Sbjct: 174 VVTIALLVVAVILIYVIPVFAGLFREAGAKLPAMTLAV 211 >gi|303244718|ref|ZP_07331049.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484932|gb|EFL47865.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 384 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 6/170 (3%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77 + ++ S+ +G+ + +A+ I EF+ +I G S ES+ R Sbjct: 218 ILHMISSLNSGMSLQEAMKNISENPEYGIASFEFKNIIYDINRGGYSFKESLERAKIRTK 277 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKAKVQALSMEAKASAWIIGSL 136 + + + + + GG + ++R+ + + +S + L Sbjct: 278 IPLMKKLYAQLIISANKGGAQLLLKNLYNEVIRESISKIDSSKFQISNLGNLVFGVGMIL 337 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 PF L + +IN LL A M + + + + + Sbjct: 338 PFAGMLLSSLQGGMGFSGIINTTN---LLLTKIAPMATIVFTIFIKMKIE 384 >gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353] gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353] Length = 445 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 10/150 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIE-- 57 KK + DFP + ++ + AGL AV I + D + F +++ Sbjct: 287 KKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRISQNYQKQRELDDSKKYAFEKMMRME 346 Query: 58 -TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115 G+S E+ S ++ G + + R ++ Sbjct: 347 QQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQSFTKGSKEAAMLMEAEEREAFHKRID 406 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +AK + + +I L + ++Y Sbjct: 407 RAKKEGEEASTRLLFPMILLLCQVMLLVMY 436 >gi|306815298|ref|ZP_07449447.1| type IV pilin biogenesis protein [Escherichia coli NC101] gi|222031935|emb|CAP74673.1| Protein transport protein hofC [Escherichia coli LF82] gi|305850960|gb|EFM51415.1| type IV pilin biogenesis protein [Escherichia coli NC101] gi|312944710|gb|ADR25537.1| type IV pilin biogenesis protein [Escherichia coli O83:H1 str. NRG 857C] gi|324008339|gb|EGB77558.1| type II secretion system F domain protein [Escherichia coli MS 57-2] Length = 400 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPCKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|157960241|ref|YP_001500275.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157845241|gb|ABV85740.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 422 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+++ Q Sbjct: 90 IATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDAL-----RPHRQYF 144 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A ++ S Sbjct: 145 DDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 201 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + + Sbjct: 202 LLLLFVVPQFEEIF 215 >gi|54310532|ref|YP_131552.1| putative general secretion pathway protein F [Photobacterium profundum SS9] gi|46914975|emb|CAG21750.1| putative general secretion pathway protein F [Photobacterium profundum SS9] Length = 410 Score = 40.4 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ + + + Q+ P +R+ V G +LS+S++ Sbjct: 79 LATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLSDSMAEYPHI-----F 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K+Q + + ++ V+ Sbjct: 134 DQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYPTMLTLVAVAV---VA 190 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P ++ + G L + + V Sbjct: 191 FLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225 >gi|302383559|ref|YP_003819382.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302194187|gb|ADL01759.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 407 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 61/153 (39%), Gaps = 14/153 (9%) Query: 33 VSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 + +A+ + Q+ P+ V G S + +++R + P E S Sbjct: 86 IEEALRIAAQQTEGQPIGVVLTDVRAAILEGRSFASALARHPKVFP--EFYRASIA---A 140 Query: 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + G L+ LA+L+ + +++ + KVQ + A + + ++ ++ + P Sbjct: 141 GEQSGKLATVLAHLTEFVGNQEKARRKVQLALLYPALLAVVSLLM---ITLMMVYVVPDI 197 Query: 152 MNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179 + V ++ L+ ++A G+ V+ Sbjct: 198 VKVFVSRGAELPFLTRALIALSAFVQAFGLYVL 230 >gi|307719946|ref|YP_003891086.1| Type II secretion system F domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978039|gb|ADN08074.1| Type II secretion system F domain protein [Sulfurimonas autotrophica DSM 16294] Length = 402 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +++GLP+ + + + +S + R + + G SLS + + Sbjct: 75 IKSGLPLYEGLQELAKESDNKRFRDMMLYIANAINNGQSLSTAF---------EAYKNVI 125 Query: 86 TVISVQS----QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 I + + G L L + L+ +K K + + + + L + Sbjct: 126 GTIILNLIKIGEETGQLEVTLKRAAEFLKRTITLKKKAKGALIYPTFA--FVAVLGAMLV 183 Query: 142 TLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185 ++Y P +++ + LG+ A + M ++ + Sbjct: 184 WMIYVL-PQMLDLFKSMDIKLPALTLGIIAVSNFLSAYWMYMIASI 228 >gi|332284399|ref|YP_004416310.1| general secretion pathway protein F [Pusillimonas sp. T7-7] gi|330428352|gb|AEC19686.1| general secretion pathway protein F [Pusillimonas sp. T7-7] Length = 402 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + A++ + Q+ V V G L E+++ ++ Sbjct: 72 LASLLAAGLTLETALSATLDQAERQHVAHALAAVRADIRAGHRLGEALA-----ARPRDF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+LS+ + L+ + R ++ K+ + + + + + Sbjct: 127 PPIYRALIDAGEQSGDLSQVMEKLADYIESRGALRNKILTAFIYPIIVSVVSIGIIIFLL 186 Query: 142 TLV 144 + V Sbjct: 187 SYV 189 >gi|303239211|ref|ZP_07325740.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593256|gb|EFL62975.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 404 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F ++AG+P++ + V+ Q+++ +R + E G+SLS S+ Sbjct: 69 FNRQF-------AIVLQAGVPIASCMDVLKQQTTNQTLRECLNDIYENIQKGISLSNSMR 121 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P + ++ G L L++ ++ + AK+++ Sbjct: 122 KHEDIFPE-----IMICMVEAGEVSGQLDIVFERLAKQFENQNAINAKIRSALT---YPI 173 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHML-LGVAAAFMLIGIMV 178 + + L+ F P ++ +L N P + +A + + Sbjct: 174 IVGVIAVAVIVVLMIFVVPSFVGILKDFNTPLPIYTKILIAVSNFFVNFWW 224 >gi|89899355|ref|YP_521826.1| general secretion pathway protein F [Rhodoferax ferrireducens T118] gi|89344092|gb|ABD68295.1| General secretion pathway protein F [Rhodoferax ferrireducens T118] Length = 411 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 13/151 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESISRMVRYMPLQ 79 + V +GLP+ A+ + ++ +E V + G + ++++S+ R Sbjct: 81 LAGLVSSGLPLERALTSLSDEAERD--NEHHLVALLRAEVNGGATFAKALSQHPR----- 133 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 E + + + GNL L L+ L +++ +KAK+ A A + Sbjct: 134 EFTPIFIAVIGAGEQSGNLGLVLERLADDLEEQQALKAKLIG---AALYPAIVSLVAVVI 190 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 V LV + P +V R LL V Sbjct: 191 VLFLVTYVVPQVAHVFAGSKRALPLLTVIMI 221 >gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073] gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073] Length = 261 Score = 40.4 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 10/185 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58 MK +R + + + A L + + + + P+ E + Sbjct: 74 MKMRENRRKERLRQVAKDIIVAAGGMFSANLMTGEVIKTLAERIPAPLGRELADIKARRE 133 Query: 59 QHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + + ++ + L E+ + ++ ++ L L LR R + Sbjct: 134 LNSYNTYPQLLNGLAEKYDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGAALRLRDRLI 193 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IG 175 + + + E++ +A ++ + G ++L A+A + +G Sbjct: 194 QERKVATYESRLAAVVVIMILAAGLLFDATAWREAY-----TGSGKLILVAASALITGMG 248 Query: 176 IMVMR 180 + V++ Sbjct: 249 LFVVK 253 >gi|294791163|ref|ZP_06756320.1| putative bacterial type II secretion system protein F domain protein [Scardovia inopinata F0304] gi|294457634|gb|EFG25988.1| putative bacterial type II secretion system protein F domain protein [Scardovia inopinata F0304] Length = 190 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 12/145 (8%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI---SRMVRYM 76 L+++ ++R G V A + + S ++ ++ + G S ++ + Sbjct: 49 LEMMTVAIRQGASVPRACEAVGMAMKTDLGSCLCQISQSLYRGASWEDAWGLSRSLPSQT 108 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 Q + + G + + + + + ++++ +K S ++ L Sbjct: 109 DRQTCDLLEQTLEPSWRHG---ASPIIRIETAIEEENRLRSR-AMDDAASKLSVKVLLPL 164 Query: 137 PFCVS--TLVYFTSP---GYMNVLI 156 C ++ P G++ + Sbjct: 165 GLCFLPAFVILTVIPSLAGWIETMW 189 >gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 7/150 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQH 60 I+ R V +R +P+ +A+ I ++ R++F R V Q Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQ-RTDFGRRFVARMQE 187 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MK 116 + L +++ + + E++ F I G+L++ L R + + + Sbjct: 188 ARVRPLGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVD 247 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ A+ ++ + + ++ + F Sbjct: 248 AEKNAMQLKLRMMSVVMFVYILGWAGYFAF 277 >gi|312110052|ref|YP_003988368.1| type II secretion system protein F [Geobacillus sp. Y4.1MC1] gi|311215153|gb|ADP73757.1| Type II secretion system F domain protein [Geobacillus sp. Y4.1MC1] Length = 403 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L DF L ++AG+ + D+ ++ Q+ ++ V E+ G LS + ++ Sbjct: 62 LQDFVIFLRQFATLIKAGVSIVDSTRILASQTESKALKKALMEVEESLRAGNPLSAAAAK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 R P F ++ + GGN+ E L L+ + K+ Sbjct: 122 HPRIFPT----MFVNMVK-AGEAGGNMDETLERLADHFEKMHRTRQKI 164 >gi|77917747|ref|YP_355562.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] gi|77543830|gb|ABA87392.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] Length = 401 Score = 40.4 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72 F ++ +R+GLP+ + + + P++ ++V E G SLS + + Sbjct: 63 RQFLTFNQEMLVLLRSGLPMLQVLDATLERLDAGPLQRSVQQVREAVKGGASLSSAFGQF 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEAKASAW 131 RY P + G+L+ + + +K KV+ + A Sbjct: 123 PRYFPY-----LYLAALQAGEQTGDLAVTIQRYVNYQKRIGQVKNKVKMAAFYPAMLCLA 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 IG L F V +V + + + ++ P LL A + + + ++ Sbjct: 178 AIGILVFMVLFVVPRFAEIFRDAKLDLPWVTRLLITLADLLTGHFLWLVPIV 229 >gi|295399389|ref|ZP_06809371.1| Type II secretion system F domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978855|gb|EFG54451.1| Type II secretion system F domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 417 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L DF L ++AG+ + D+ ++ Q+ ++ V E+ G LS + ++ Sbjct: 76 LQDFVIFLRQFATLIKAGVSIVDSTRILAEQTESKALKKALMEVEESLRAGNPLSAAAAK 135 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 R P + F ++ + GGN+ E L L+ + K+ Sbjct: 136 HPRIFP----AMFVNMVK-AGEAGGNMDETLERLADHFEKMHRTRQKI 178 >gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2] Length = 395 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia dioxanivorans CB1190] Length = 243 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 +++ + AG+PVS AV Q P RRV LG +E+ Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDGPSGRALRRVAGLLELGADPAEA 154 >gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa 39016] Length = 395 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|224823845|ref|ZP_03696954.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224604300|gb|EEG10474.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 408 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 14/185 (7%) Query: 5 IKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 +KKR A F + + ++AG+P+ + + S+P V V Sbjct: 54 LKKRKAGFGKRITDRDITLFTRQLATMMKAGVPLLQSFDISAKGHSNPAVTKMLLEVRAD 113 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+SL+E+ + + F +I+ + GG L L L+ +K K Sbjct: 114 VETGMSLAEAFR---KRPLYFD-KLFCNLIA-AGETGGVLDSLLDKLATYREKIMAIKGK 168 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ S SA I + ++Y P + ++ + + ++ + Sbjct: 169 IK--SAMIYPSAIIATAFIITTIIMLYVI-PAFKDLFSSFGADLPAPTLLVIWLSDAFVK 225 Query: 179 MRLMI 183 ++ Sbjct: 226 FWWLV 230 >gi|254524287|ref|ZP_05136342.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] gi|219721878|gb|EED40403.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] Length = 399 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ ++ Q+ P V V G L+ +++ Sbjct: 65 ATRQLASLLAASLPLESALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136 ++ + + G+L+ + L+ + +R ++AKV + A S + + Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 F +S +V ++ P ++ A+AF Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214 >gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Length = 395 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|291295428|ref|YP_003506826.1| type II secretion system protein [Meiothermus ruber DSM 1279] gi|290470387|gb|ADD27806.1| type II secretion system protein [Meiothermus ruber DSM 1279] Length = 399 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%) Query: 16 FPNALDI---IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 P + + + VRAG+P+ A+ + Q+ P +R R + E G L+ ++ Sbjct: 57 LPELVILTEQLATMVRAGVPLVQALHTLSLQAGSPSLREALRGLRERIEAGQGLARAMED 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + P + +LGG+L L L+ L ++ K + Sbjct: 117 YPQVFP-PLMRHLVAA----GELGGSLEVVLQRLAEYLDKSYELQEKTRT 161 >gi|319956473|ref|YP_004167736.1| type II secretion system f domain protein [Nitratifractor salsuginis DSM 16511] gi|319418877|gb|ADV45987.1| Type II secretion system F domain protein [Nitratifractor salsuginis DSM 16511] Length = 416 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%) Query: 27 VRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 VRAG+PVS+A+ V + D +R + V G+SL+E+ + L E + Sbjct: 290 VRAGIPVSEALQTAVNMVNNDYIREKLETVNANIGRGMSLTEAFEQ----TGLFE-NMLL 344 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +I + G L + L ++ R + S++I + F ++ LV Sbjct: 345 QMIK-AGEASGQLDKMLQKVTDYYNMRFQ--------DIIDNLSSYIEPIMLFFIAGLVL 395 Query: 146 FTSPGYMNVLINDPRGHML 164 + G + + G + Sbjct: 396 LMALGIFLPMWD--LGRAV 412 >gi|296121549|ref|YP_003629327.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296013889|gb|ADG67128.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 347 Score = 40.1 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G+ + A+ + ++ D +R+I+ G LSE++ P Sbjct: 19 LSTLLHSGVALIRALELAGKRAGDQRFGPVTQRLIQEVRSGNGLSEALIAEGSTFP---- 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM----EAKASAWIIGSLP 137 + ++SV Q G NL E L +L+ + M+ A +A A+ I+ L Sbjct: 75 ALLVDMVSVGEQTG-NLPEVLTSLAGHFDHQVQMRRTFIAAITWPVLQAVAAILIVAILI 133 Query: 138 FCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + T ++VL + G +L VA IG ++ M Sbjct: 134 VVLGIVAQVTGSSPLDVLGVGLTGTTGAVAWLSGWAMLLVAGC---IGWEMINRM 185 >gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus SNP6] Length = 635 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 10/118 (8%), Positives = 41/118 (34%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ + P + AGL + +A+ V+ + E + G Sbjct: 421 LRERTVRQIEKRIPEIFKELAILNEAGLSIIEALKVLSTIELGVISKEINIIRRRIEWGE 480 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++++ + + + ++ + + +A ++ ++ ++++ Sbjct: 481 PVTKALRLLELRVRSEIIAKVIPISVKALETSPTYKDAFQTVAAFASAEVGLRERIRS 538 Score = 37.8 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59 + +R + P+A++++ G+ D + + + EF +I+ Sbjct: 133 SFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMIKSVAEAKFMFGELSKEFGTIIQLT 192 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L ++ + P +++S F + + GGNLS L N S + + + Sbjct: 193 DVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIKGGGNLSAFLKNKSDEFFEEQEV 249 >gi|34499282|ref|NP_903497.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC 12472] gi|34105133|gb|AAQ61489.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum ATCC 12472] Length = 407 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 14/157 (8%) Query: 5 IKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 I++R + F + +RAG+P+ A + S+P V V Sbjct: 53 IRRRRSGFGKKITEKDITLFTRQLSTMMRAGVPLLQAFDIAAKGHSNPAVTRMLLEVRAD 112 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 GLSL+E+ + + F +I+ + GG L L L+ +K+K Sbjct: 113 VETGLSLAEAFR---KRPLYFD-KLFCNIIA-AGEAGGVLDTLLDKLATYKEKVMAIKSK 167 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ + I+G+ + ++ + P + ++ Sbjct: 168 IK---SAMIYPSAIVGTAFIITAVIMIYVIPAFKDLF 201 >gi|220931443|ref|YP_002508351.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168] gi|219992753|gb|ACL69356.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168] Length = 401 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F + AG+ + +A+ ++ Q P ++ R + E G SL++++ Sbjct: 68 FTQQF-------SVLLNAGISLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALL 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P + ++ + GG L + L LS + + +KV+ Sbjct: 121 KHPDVFP----ELYCQMVK-AGEAGGVLDQVLEQLSAHYERQDEINSKVK---SAMYYPV 172 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ V L+ P ++++ Sbjct: 173 ILLVVAVGVVIFLMTRVVPQFISLF 197 >gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 404 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 +R K D + + AGLP+ A+ ++ Q+ + +R ++ + G + Sbjct: 58 RRVGK--QDLAVFCRQLATMLGAGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETF 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E+++R+ + P+ I ++LGG+L EAL L+ L ++ KV++ Sbjct: 116 HEALARLQVFPPI-----MVHAIE-AAELGGSLDEALEELAAHLEREHELQEKVKS 165 >gi|77919283|ref|YP_357098.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] gi|77545366|gb|ABA88928.1| type II secretory pathway, component PulF [Pelobacter carbinolicus DSM 2380] Length = 402 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 18/174 (10%) Query: 23 IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ +++G+P+ +A ++ Q S ++ V + G SLSE+ + Y P Sbjct: 72 MLVLLKSGMPILQILASLVHDQDSANTKNVLTEVFTSVKGGRSLSEAFAGFPEYFP---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ + G+L + L +R L +K M L A ++ + + Sbjct: 128 GLYVASVA-SGEKTGDLPQTL---ARYLGYQKRMAQVKDRLKSAALYPLVLVAATILVLL 183 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLG---------VAAAFMLIGIMVMRLMINFD 186 +V+F P ++ + + L A + ++ ++VM M+ Sbjct: 184 FMVFFVIPSFVQIYADAQVSLPFLTRFVLGLADLAARGWFVVLVLVMSGMVALR 237 >gi|218782977|ref|YP_002434295.1| general secretion pathway protein F [Desulfatibacillum alkenivorans AK-01] gi|218764361|gb|ACL06827.1| General secretion pathway protein F [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AGLP+ A+ ++ QS P ++ V + G SL++++S + Sbjct: 78 LSTLVGAGLPIVSALESLIPQSPHPVLQKVLAHVKDDIVEGKSLADALSSHPKV-----F 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G + LA LS + +N K K++A ++ ++ Sbjct: 133 SPLYVNMVRAGEASGAMEIVLARLSDLTERNENTKGKIRAALA---YPVIMVLVAIVVLT 189 Query: 142 TLVYFTSPGYMNVL 155 L+ P +++ Sbjct: 190 ALMVKVVPSIVSLF 203 >gi|169838373|ref|ZP_02871561.1| type IV pilus assembly protein [candidate division TM7 single-cell isolate TM7a] Length = 245 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 16/149 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 +++ + + F + AG+P++ ++ + + +PV R V Sbjct: 61 RNVKQDELSIFTRQL-------STMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVE 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL++++ + + S + + G L E L L+ ++ K++ Sbjct: 114 SGVSLADALGKHPKV-----FSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIK 168 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 ++ L+ F P Sbjct: 169 ---SAMTYPVVLVVISVLAFFGLMIFVIP 194 >gi|74318387|ref|YP_316127.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] gi|74057882|gb|AAZ98322.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans ATCC 25259] Length = 407 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 11/177 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +K A F ++AG+P+ + ++ S+P +R++ Sbjct: 62 KRITEKDVALFTRQL-------ATMMKAGVPLLQSFEIVARGHSNP---SMQRLLMEIKA 111 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + S+++ PL + F ++ + G L L L+ +K K+++ Sbjct: 112 DIEKGSSLTQSFARHPLYFDALFCNLVG-AGEAAGILEAVLDRLAVYKEKILAIKGKIKS 170 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + V + D G L+ +A + + Sbjct: 171 ALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWW 227 >gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 395 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + S + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|256842813|ref|ZP_05548301.1| competence protein [Lactobacillus crispatus 125-2-CHN] gi|256614233|gb|EEU19434.1| competence protein [Lactobacillus crispatus 125-2-CHN] Length = 333 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 22/190 (11%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 MK++ + K + LD + S+ G + +++ ++ R R+ + Sbjct: 1 MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASS 58 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115 G S S + ++ FS Q GNL E L +L+ + R ++ Sbjct: 59 MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K++ E + + + + F S + + +D G M++ +L+G Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163 Query: 176 IMVMRLMINF 185 + ++ Sbjct: 164 LYFFAKIVTL 173 >gi|209696320|ref|YP_002264251.1| general secretion pathway protein F [Aliivibrio salmonicida LFI1238] gi|208010274|emb|CAQ80606.1| general secretion pathway protein F [Aliivibrio salmonicida LFI1238] Length = 405 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ + + + Q P +RS V G L+ES Sbjct: 75 LATLVQAGMPLEECLKAVAEQGEKPHIRSMMMGVRSKVIEGYPLAESFGGYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q + I ++ +S Sbjct: 131 DLFCSMVA-AGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPIMLTLIAVAV---IS 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L+ P ++ + +G + Sbjct: 187 FLLATVVPKIVDQFVQMGQGLPAVTEILI 215 >gi|167957546|ref|ZP_02544620.1| pilin biogenesis protein [candidate division TM7 single-cell isolate TM7c] Length = 404 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 12/167 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+S ++ + Q+++ ++ + +I G SLS+S ++ Sbjct: 72 LATLIGAGLPLSQSLRTVQEQTTNKRMQEIVQEIISDVEGGKSLSDSFAKHPE-----AF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G + E+L L+ M +K++ M + ++ + V Sbjct: 127 NKVYVALVAAGETSGTMDESLKRLAAQQEKDAAMMSKIRGAMM---YPSIVLAVIILVVG 183 Query: 142 TLVYFTSP---GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ P G L L+ + A I + L+I Sbjct: 184 FMLFTVVPQVEGLYRDLNKGLPFITLIMINVANFFIHFWWLALLIMI 230 >gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192] gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192] Length = 395 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|296109004|ref|YP_003615953.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433818|gb|ADG12989.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 345 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 56/162 (34%), Gaps = 4/162 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + ++AG + + + + + E +I + G++ +++ R + + Sbjct: 180 LLYMTSLLKAGASLPEILTGLARSREYGVLSYEAALIIRDINSGMTFEDALRRAIIRTTI 239 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRK-NMKAKVQALSMEAKASAWIIGSL 136 + + + G NLS L L + R+ + + + + + Sbjct: 240 PLLRKVFDQMIIGYNKG-NLSLLLEKLYEEIVRESLSKLDTSKFMIQNLGNLAFGVGLIM 298 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 PF + S + ++N ML ++ G+ V Sbjct: 299 PFSGLIMSAMISNQGFSGILNAVNFLMLNLGPILAIIFGVFV 340 >gi|220933966|ref|YP_002512865.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp. HL-EbGR7] gi|219995276|gb|ACL71878.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp. HL-EbGR7] Length = 403 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMP 77 L + + AG+P+ A ++ +P E ++ G + S ++ + +Y Sbjct: 69 FLRQMATMMEAGVPLVQAFDIVGRGHENPSMQELILAMKSDVEGGTTFSAALGKHPKY-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L L ++ +++KAK++ +A ++ + Sbjct: 127 ---FDDLVVNLVNAGEQAGALETLLDKIATYKEKTESLKAKIKKALFYP--TAVLVVAFI 181 Query: 138 FCVSTLVYFTSPGYMNVL 155 L++ P + ++ Sbjct: 182 VTAILLIFVV-PQFQDLF 198 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 11/126 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81 + AG+P+ +A+ + G + + + E R+ + G L ++ P Sbjct: 277 LSTMFAAGVPLVEAMESVAGATGNALYREATLRIRDETAAGTQLQAAMRNTA-LFP---- 331 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++++ + G L + L ++ + + S+ + I+ L V Sbjct: 332 NMVVQMVAIGEESGA-LDDMLDKVADFYEEEVD----NMVDSLSSLMEPMIMAFLGVVVG 386 Query: 142 TLVYFT 147 LV Sbjct: 387 GLVIAM 392 >gi|28896909|ref|NP_796514.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD 2210633] gi|153839995|ref|ZP_01992662.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ3810] gi|260365904|ref|ZP_05778398.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030] gi|260877809|ref|ZP_05890164.1| general secretion pathway protein F [Vibrio parahaemolyticus AN-5034] gi|260895542|ref|ZP_05904038.1| general secretion pathway protein F [Vibrio parahaemolyticus Peru-466] gi|260902566|ref|ZP_05910961.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ4037] gi|28805117|dbj|BAC58398.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD 2210633] gi|149746472|gb|EDM57475.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ3810] gi|308088542|gb|EFO38237.1| general secretion pathway protein F [Vibrio parahaemolyticus Peru-466] gi|308089749|gb|EFO39444.1| general secretion pathway protein F [Vibrio parahaemolyticus AN-5034] gi|308109718|gb|EFO47258.1| general secretion pathway protein F [Vibrio parahaemolyticus AQ4037] gi|308113481|gb|EFO51021.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030] gi|328471684|gb|EGF42561.1| general secretion pathway protein F [Vibrio parahaemolyticus 10329] Length = 405 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 10/126 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +R+ V G L++S+ Sbjct: 74 LSTLVQSGMPLEECLRAVSEQAEKPRIRTMIAAVRSKVTEGYPLADSLGDYPHVFD---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ + +R+ M++K+ ++A ++ + Sbjct: 130 ELFRSMVA-AGEKSGHLDTVLERLAEYVENRQKMRSKL----LQAMIYPVVLVVFAVAIV 184 Query: 142 TLVYFT 147 + + T Sbjct: 185 SFLLAT 190 >gi|222478656|ref|YP_002564893.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] gi|222451558|gb|ACM55823.1| type II secretion system protein [Halorubrum lacusprofundi ATCC 49239] Length = 664 Score = 40.1 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 16/189 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIET 58 ++ L R P A+ + + AG + + + R+ + Sbjct: 149 LRWLTATRRTDIERTLPPAVRYLE-LLAAGSDGPRKMVEKAAANDAYGGTATSLRKALNA 207 Query: 59 QHLGLSLSESISRMVRYMPLQEVSF-FSTVISVQSQLG-GNLSEALANLSRIL-----RD 111 L SL E + R+ R P +E+ F + G L+E L SR+L R Sbjct: 208 ARLAGSLDEGLRRVARDTPSRELLAPFLLKFRKHAATGDAALAEYLRTESRMLAHRQDRA 267 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGV 167 RK + ++ L+ + L + L P + + + P G ++ Sbjct: 268 RKRARRFLELLTELFVVVLVLPALLVIAATALTVVV-PELLPPV-DTPVGVVPTRAVVLY 325 Query: 168 AAAFMLIGI 176 A L+ I Sbjct: 326 GAVVFLVAI 334 >gi|88704112|ref|ZP_01101827.1| general secretory pathway protein F [Congregibacter litoralis KT71] gi|88701939|gb|EAQ99043.1| general secretory pathway protein F [Congregibacter litoralis KT71] Length = 405 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +P E + G L+ S+S+ R+ Sbjct: 75 MATMMKAGVPLVQSFDIVGDGLENPSMKELVGGIKNDVSAGGGLALSLSKHPRHFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ + G L L ++ + +KAK++ +A I+ +L Sbjct: 131 ELFCSLVG-AGESAGTLETMLDRVATYKEKTEQLKAKIKKALTYP--TAVIVVALVVSGI 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 LV P + G L A M++G+ Sbjct: 188 LLVKVV-PQFAETF--SSFGADL--PAFTLMVLGL 217 >gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719] gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719] gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 395 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L +R K ++ A+ + + AG+ ++DAV + P + + + + Sbjct: 46 RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S + +P + ++ GNL+ AL + + + + +A++Q Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + A ++ S V+TL F P L+N+ L A + + Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209 >gi|77919741|ref|YP_357556.1| putative general protein secretion protein [Pelobacter carbinolicus DSM 2380] gi|77545824|gb|ABA89386.1| putative general protein secretion protein [Pelobacter carbinolicus DSM 2380] Length = 405 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AGL + + ++ Q + ++ V E G + ++++S Sbjct: 70 FTRQFATMID-------AGLALVQCLDILGRQQENQVLKKVLVEVKEGVESGSTFADALS 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + F + ++GG L L L+ L + + + A Sbjct: 123 KHPKIFD----ELFVN-LVAAGEVGGILDTILNRLAAYL---EKAHKLKKKVKGAMTYPA 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183 ++G + ++ F P + D G + L + + + +I Sbjct: 175 TVVGIAVIVIGVILVFVIPA-FEKMFADFGGVLPLPTRIVIAISNFIQSWIFAII 228 >gi|258652939|ref|YP_003202095.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233] gi|258556164|gb|ACV79106.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233] Length = 305 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 52/156 (33%), Gaps = 4/156 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 ++ R +F LD+ + ++A+ + P + Sbjct: 151 IRREAHGRRVEFRHALGAYLDLTSLEMAGSAAPAEALPTAARVGASWPFLLIRDTLYRAA 210 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S ++S + + + E+ +I + + G + LA ++ +R R+ + Sbjct: 211 RGGRSPWVALSDLGSRIGVPELRDLGGMIELVAHDGARVRSTLAARAQTMRRRELADLQG 270 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + + + +++ P + +L Sbjct: 271 NAGKADQSMR---LAQILVAFGFIIFIGYPAFAVIL 303 >gi|88801096|ref|ZP_01116643.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] gi|88776175|gb|EAR07403.1| Type II secretory pathway, component PulF [Reinekea sp. MED297] Length = 407 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 18/171 (10%), Positives = 59/171 (34%), Gaps = 14/171 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +P + + G S ++ + +Y Sbjct: 77 MATMMKAGVPLMRSFEIVAEGLDNPKMAELVTSMKNNVAGGGSFGSALRQHPKY-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ ++ +A + + K A ++ Sbjct: 132 DDLYCSLIESGEQAGALETMLDRVAIY---KEKSEAVKKKVKSAMKYPATVLVVAAIVTI 188 Query: 142 TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 L+ P + + N +++ ++++ GI+ +++ + Sbjct: 189 ILLLKVVPTFAEMFSNFGADLPVPTQIVMNMSSSLQENGIIWGSIILAIAI 239 >gi|312961923|ref|ZP_07776420.1| general secretion pathway protein F [Pseudomonas fluorescens WH6] gi|311283733|gb|EFQ62317.1| general secretion pathway protein F [Pseudomonas fluorescens WH6] Length = 400 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 63/165 (38%), Gaps = 11/165 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS+++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + ++ L+ + P ++ + + G + + + +G + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217 >gi|288814578|gb|ADC54375.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia] Length = 399 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ ++ Q+ P V V G L+ +++ Sbjct: 65 ATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136 ++ + + G+L+ + L+ + +R ++AKV + A S + + Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 F +S +V ++ P ++ A+AF Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214 >gi|225851038|ref|YP_002731272.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1] gi|225646001|gb|ACO04187.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1] Length = 400 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D + + AG+ +++A+ ++ Q + + + V E G+SL++++ + Sbjct: 61 EKDLAIFTRQLGAMISAGVGIAEALEILSEQIPNKTLADALKSVKEDVMAGMSLAKAMEK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P F ++ ++ GNL L + +K K+ + S Sbjct: 121 HPKAFPE-----FLVNLTAAAEESGNLDVILKRATVYYEKIAAIKRKLISASWYPAMVVV 175 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 I + + T + T + Sbjct: 176 IATVIVLGILTFIVPTFAQLYKGM 199 >gi|318607112|emb|CBY28610.1| type IV fimbrial assembly protein PilC [Yersinia enterocolitica subsp. palearctica Y11] Length = 399 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + +R ++AGLP+ + + ++ + P + + + + Sbjct: 53 ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117 G SLSE+++ P + + G L+ L + +L + K Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172 + + + K ++ + ++ P + + + P +L FM Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210 >gi|330866887|gb|EGH01596.1| general secretion pathway protein GspF [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 332 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196 >gi|262189839|ref|ZP_06048173.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] gi|262034282|gb|EEY52688.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] Length = 379 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S+ Sbjct: 48 LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 103 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ +R+ M++K+Q +A ++ + Sbjct: 104 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 158 Query: 142 TLVY 145 + Sbjct: 159 AFLL 162 >gi|332976658|gb|EGK13498.1| pilin secretion/fimbrial assembly system protein [Psychrobacter sp. 1501(2011)] Length = 238 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 19 ALDI------IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 ALDI + +AG+P+ ++ +++ + P + ++ + G + ++S+ Sbjct: 66 ALDIAVFARQLATMTKAGVPLLQSLDIVIETLTKPSMIEVVEQLKYSIESGTPFAAALSK 125 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + G+L L ++ +++K+K++ A Sbjct: 126 HPKQ-----FDNLFCALVSAGEYSGSLDIMLERIATYKEKSEHLKSKIKKAIKYPIAVTS 180 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 + + + V + Sbjct: 181 VAIMVSLILLLKVVPVFSELFDSF 204 >gi|269104071|ref|ZP_06156768.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp. damselae CIP 102761] gi|268163969|gb|EEZ42465.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp. damselae CIP 102761] Length = 405 Score = 40.1 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +AG+P+ A+ + +S P+ E VI G LS S+ + + Sbjct: 75 SLTKAGIPLLRAIKGLAQSTSHPLLRETLEAVIADLTNGSPLSVSMKQHP-RVFTP---L 130 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 F ++I+V + G L +L L+ + ++ + +++ S+ + L Sbjct: 131 FVSMINV-GENTGRLDSSLLQLANYYEQEMETRRQIA---SAMRYPMFVLTSIGLAMVVL 186 Query: 144 VYFTSPGYMNVL 155 P + ++ Sbjct: 187 NIKVIPQFASMF 198 >gi|294787152|ref|ZP_06752405.1| conserved hypothetical protein [Parascardovia denticolens F0305] gi|294484508|gb|EFG32143.1| conserved hypothetical protein [Parascardovia denticolens F0305] Length = 269 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 12/171 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRV-IETQHLGLSLSESISRMV 73 + + ++ + G + DA + G + + V G S ++R+ Sbjct: 47 DFIAELISLLHNGSGMVDACQEMGGMVFAIPELTDDRMKAVLARRCGHGRSDRAYLTRLA 106 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + LG + S+ L + + + K ++ + + ++ Sbjct: 107 RQ--------LVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSALSIPRLTVKVL 158 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP V TS VL P G + L +AA +G+ ++ ++ Sbjct: 159 LILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLLR 209 >gi|152985681|ref|YP_001350164.1| putative type II secretion system protein [Pseudomonas aeruginosa PA7] gi|150960839|gb|ABR82864.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7] Length = 404 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ + Q+ + V G+ L+++++ R Sbjct: 70 ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALA--ARPRD 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 E+ + + G+L++ + L+ + +R ++ K+ Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166 >gi|83749454|ref|ZP_00946446.1| General secretion pathway protein F [Ralstonia solanacearum UW551] gi|207738421|ref|YP_002256814.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] gi|83723891|gb|EAP71077.1| General secretion pathway protein F [Ralstonia solanacearum UW551] gi|206591787|emb|CAQ58693.1| general secretion pathway gspf-related protein [Ralstonia solanacearum IPO1609] Length = 391 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AGL V +A+ + + P RS V+ G LS + M P + ++ Sbjct: 66 LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 121 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++I + NL ++L+ ++AK+ + S+ A + ++ + V Sbjct: 122 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 179 >gi|194365986|ref|YP_002028596.1| general secretion pathway protein F [Stenotrophomonas maltophilia R551-3] gi|194348790|gb|ACF51913.1| general secretion pathway protein F [Stenotrophomonas maltophilia R551-3] Length = 399 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A+ ++ Q+ P V V G L+ +++ Sbjct: 65 ATRQLASLLAASLPLEAALTAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136 ++ + + G+L+ + L+ + +R ++AKV + A S + + Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 F +S +V ++ P ++ A+AF Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214 >gi|254515229|ref|ZP_05127290.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR5-3] gi|219677472|gb|EED33837.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR5-3] Length = 405 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 8/126 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ +P E + G L+ S+S+ R+ Sbjct: 75 MATMMKAGVPLVQSFDIVGDGLENPSMKELVNGIKNDVSAGGGLALSLSKFPRHFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ + G L L ++ + +KAK++ +A I+ +L Sbjct: 131 ELFCSLVG-AGESAGTLEVMLDRVATYKEKTEQLKAKIKKALTYP--TAVIVVALVVSGI 187 Query: 142 TLVYFT 147 LV Sbjct: 188 LLVKVV 193 >gi|300696695|ref|YP_003747356.1| general secretion pathway protein F [Ralstonia solanacearum CFBP2957] gi|299073419|emb|CBJ52933.1| General secretion pathway protein F [Ralstonia solanacearum CFBP2957] Length = 395 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AGL V +A+ + + P RS V+ G LS + M P + ++ Sbjct: 70 LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 125 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++I + NL ++L+ ++AK+ + S+ A + ++ + V Sbjct: 126 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 183 >gi|66044052|ref|YP_233893.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63254759|gb|AAY35855.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 405 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +M + I+ + + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK-AMTYPIAVLIVALIVSGIL 188 Query: 142 TL 143 + Sbjct: 189 LI 190 >gi|262200535|ref|YP_003271743.1| type II secretion system F domain-containing protein [Gordonia bronchialis DSM 43247] gi|262083882|gb|ACY19850.1| Type II secretion system F domain protein [Gordonia bronchialis DSM 43247] Length = 202 Score = 40.1 bits (93), Expect = 0.16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 6/132 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMP 77 A D+ +RAGLPV A A + + + V + LG + S + P Sbjct: 56 AFDLFAVCLRAGLPVGTAAATVAASAPASLAGPLTEVADLLGLGADPDTAWSVLTASDTP 115 Query: 78 L----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI- 132 + + +++ ++ G +L+ LA L+ R + + A A S + Sbjct: 116 VVGAQPHLDALASMARRSARAGSSLAAGLAELADETRRQAHDTATAAAERAGVAISGPLG 175 Query: 133 IGSLPFCVSTLV 144 + LP V + Sbjct: 176 LCFLPAFVCLGI 187 >gi|254447703|ref|ZP_05061169.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] gi|198263046|gb|EDY87325.1| general secretion pathway protein F [gamma proteobacterium HTCC5015] Length = 383 Score = 40.1 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 H + +R + +P + + + AG+P+++A+ + ++ + + Sbjct: 47 SHAVSRRQWR--QSWPLVVRQLRQLSAAGVPLAEAMDALSQEAEPVAWAQLLQDLARDLS 104 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS++++R ++P S + + G L L L++IL R+ +++ Sbjct: 105 AGQRLSQALARFEEHLPEP-----SMSLIQAGENSGTLERQLDTLAQILEWREARRSE 157 >gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima MSB8] gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima MSB8] Length = 399 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + +A+ ++ Q+ FR+VI L + +S++ R + Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQTV--FSRRFRKVILEIALNVETGDSLAEAFRKTGV 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GG L L + K ++ +V++ +++ Sbjct: 123 --FDNVLISMLEAGEEGGVLDRTLKRAADFYESIKRLQDEVKSAMA---YPLFVLFFAVV 177 Query: 139 CVSTLVYFTSPGYMNVL 155 V + ++ P + Sbjct: 178 IVLVISFYILPNLVRAF 194 >gi|295692601|ref|YP_003601211.1| competence protein [Lactobacillus crispatus ST1] gi|295030707|emb|CBL50186.1| Competence protein [Lactobacillus crispatus ST1] Length = 333 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 22/190 (11%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 MK++ + K + LD + S+ G + +++ ++ R R+ Sbjct: 1 MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASR 58 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115 G S S + ++ FS Q G L E L +L+ + R ++ Sbjct: 59 MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGTLVECLQHLATLNRLKQEQ 108 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K++ E + + + + F S + + +D G M++ +L+G Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163 Query: 176 IMVMRLMINF 185 + ++ Sbjct: 164 LYFFAKIVTL 173 >gi|283781435|ref|YP_003372190.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283439888|gb|ADB18330.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 400 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+P+ +++V+ Q+S+P ++ + G + + ++R R Sbjct: 69 LAALLRSGVPLLRSISVLRDQTSNPNLKEILDELYRKVEDGTPMGDVMARFPR-----AF 123 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + GG L +AL ++ ++ +K + + A + ++ + Sbjct: 124 SDMAINMVRAGSEGGFLEDALERVASFTETQEELKGRTISAVAYPLILASVGTTVVTVLI 183 Query: 142 TLVYFTSPGYMNVL---------------INDPRGHMLLGVAAAFMLIGIMVMRLM 182 L ++D + L + A IG+ + + Sbjct: 184 VFFVPKFATMFERLKANNQLPMLTDWLLKLSDTLRNYGLVIVAVLAAIGVWLYMKL 239 >gi|190574658|ref|YP_001972503.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] gi|190012580|emb|CAQ46208.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] Length = 399 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ ++ Q+ P V V G L+ +++ Sbjct: 65 ATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136 ++ + + G+L+ + L+ + +R ++AKV + A S + + Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 F +S +V ++ P ++ A+AF Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214 >gi|168213196|ref|ZP_02638821.1| bacterial type II secretion system protein F [Clostridium perfringens CPE str. F4969] gi|170715199|gb|EDT27381.1| bacterial type II secretion system protein F [Clostridium perfringens CPE str. F4969] Length = 401 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L ++ ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|330941596|gb|EGH44379.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 405 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +M + I+ + + Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK-AMTYPIAVLIVALIVSGIL 188 Query: 142 TL 143 + Sbjct: 189 LI 190 >gi|291615154|ref|YP_003525311.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291585266|gb|ADE12924.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 405 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A ++ +P V + G SL +S + Y Sbjct: 74 LATMLKSGVPLLQAFDIVGKGHDNPAVSRLLFDIKTDVETGSSLEQSFRKFPLY-----F 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ +K+K+++ + I + + Sbjct: 129 DDLYCNLLGAGEAAGILDSLLDRLATYKEKILAIKSKIKSALFYPISIIVIAFVITAVIM 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + D G L+ +A + + Sbjct: 189 IFVIPAFKDLFSNFGADLPGPTLVVMAISDFFVAWWW 225 >gi|197262922|ref|ZP_03162996.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241177|gb|EDY23797.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 400 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ + V +++F P + + N P Sbjct: 169 ILTMVALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|154148351|ref|YP_001406609.1| type II secretion system protein [Campylobacter hominis ATCC BAA-381] gi|153804360|gb|ABS51367.1| type II secretion system protein [Campylobacter hominis ATCC BAA-381] Length = 413 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 61/140 (43%), Gaps = 15/140 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + I V+AG+P++DA+ V + ++++ V G+SL+E++ Sbjct: 281 FMLIFTELVKAGIPIADALDTAVLMVDNEELKTKLSTVKIAVQQGVSLTEAMRN----TG 336 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E S ++S + G+L + L N++ +++ + + S+++ L Sbjct: 337 LYE-SMLIQMVS-AGEKSGSLDKMLGNVTNYYKEKFD--------DIIDNISSYVEPILL 386 Query: 138 FCVSTLVYFTSPGYMNVLIN 157 ++ +V + G + + Sbjct: 387 LFMAAMVLLMALGIFMPMWD 406 >gi|153833903|ref|ZP_01986570.1| general secretion pathway protein F [Vibrio harveyi HY01] gi|148869741|gb|EDL68718.1| general secretion pathway protein F [Vibrio harveyi HY01] Length = 406 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S+ Sbjct: 75 LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++++ + G+L L L+ + +R+ M++K+ ++A ++ + Sbjct: 131 ELFRSMVA-AGEKSGHLDAVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185 Query: 142 TLVY 145 +L+ Sbjct: 186 SLLL 189 >gi|260770772|ref|ZP_05879701.1| general secretion pathway protein F [Vibrio furnissii CIP 102972] gi|260614009|gb|EEX39199.1| general secretion pathway protein F [Vibrio furnissii CIP 102972] gi|315178813|gb|ADT85727.1| general secretion pathway protein F [Vibrio furnissii NCTC 11218] Length = 407 Score = 39.7 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 58/124 (46%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +LS+S++ + Sbjct: 76 LSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRSKVTEGYTLSDSMADYPQVFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEAKASAWIIGSLPFCV 140 F ++++ + G+L L L+ +R+ M++K +QA+ + + + F + Sbjct: 132 ELFRSMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMLYPIVLVVFAVAIVAFLL 190 Query: 141 STLV 144 + +V Sbjct: 191 AAVV 194 >gi|213051996|ref|ZP_03344874.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 224 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM 6725] Length = 403 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 9/152 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + D + AG+P+ A+ VI Q D + + G Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRYFGKVLEDIHKKVQSGS 113 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS +++ P +I ++ G++ +AL ++ ++ K+ Sbjct: 114 MLSRALAEKAECFPS----ILVNMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A +I + ++ F P ++ + Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197 >gi|296103140|ref|YP_003613286.1| general secretion pathway protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057599|gb|ADF62337.1| general secretion pathway protein F [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 402 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ A+ I Q+ D + + + E G +L ++ S+ R Sbjct: 72 LSTLVNASLPLESALKAISKQTEDKKLAAMVTEIREKVVEGHTLFDAFSQFPR-----TF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + + G+L + L L+ R+ MK+K+ QA+ + + + + Sbjct: 127 DKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVVAVAVISILL 186 Query: 141 STLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMV 178 +V ++++ P L+ V+ GI + Sbjct: 187 VAVVPQVIEQFVHMKQQLPITTRTLIAVSDFLQAYGIYI 225 >gi|116048594|ref|YP_792607.1| putative type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390958|ref|ZP_06880433.1| putative type II secretion system protein [Pseudomonas aeruginosa PAb1] gi|115583815|gb|ABJ09830.1| probable type II secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 404 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ + Q+ + V G+ L+++++ R Sbjct: 70 ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 E+ + + G+L++ + L+ + +R ++ K+ Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166 >gi|332160427|ref|YP_004297004.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664657|gb|ADZ41301.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860122|emb|CBX70445.1| protein transport protein hofC [Yersinia enterocolitica W22703] Length = 399 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + +R ++AGLP+ + + ++ + P + + + + Sbjct: 53 ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117 G SLSE+++ P + + G L+ L + +L + K Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172 + + + K ++ + ++ P + + + P +L FM Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210 >gi|182625510|ref|ZP_02953281.1| bacterial type II secretion system protein F [Clostridium perfringens D str. JGS1721] gi|177909198|gb|EDT71663.1| bacterial type II secretion system protein F [Clostridium perfringens D str. JGS1721] Length = 401 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P + Sbjct: 73 VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP----NL 128 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++I + GNL L ++ ++ K++ + ++ + Sbjct: 129 LISMID-AGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|123441047|ref|YP_001005036.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088008|emb|CAL10796.1| putative type II secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 399 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + +R ++AGLP+ + + ++ + P + + + + Sbjct: 53 ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117 G SLSE+++ P + + G L+ L + +L + K Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172 + + + K ++ + ++ P + + + P +L FM Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210 >gi|254244923|ref|ZP_04938245.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192] gi|126198301|gb|EAZ62364.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192] Length = 404 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ + Q+ + V G+ L+++++ R Sbjct: 70 ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 E+ + + G+L++ + L+ + +R ++ K+ Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166 >gi|15595884|ref|NP_249378.1| type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|107100153|ref|ZP_01364071.1| hypothetical protein PaerPA_01001174 [Pseudomonas aeruginosa PACS2] gi|218893355|ref|YP_002442224.1| putative type II secretion system protein [Pseudomonas aeruginosa LESB58] gi|254239065|ref|ZP_04932388.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719] gi|9946567|gb|AAG04076.1|AE004503_14 probable type II secretion system protein [Pseudomonas aeruginosa PAO1] gi|126170996|gb|EAZ56507.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719] gi|218773583|emb|CAW29397.1| probable type II secretion system protein [Pseudomonas aeruginosa LESB58] Length = 404 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + A LP+ A++ + Q+ + V G+ L+++++ R Sbjct: 70 ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 E+ + + G+L++ + L+ + +R ++ K+ Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166 >gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 405 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 V + A ++ + + L+ + P + Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196 >gi|66871270|gb|AAC23568.2| truncated type IV pilus assembly protein TapC [Aeromonas salmonicida] gi|88866545|gb|ABD57322.1| truncated TapC [Aeromonas salmonicida subsp. salmonicida A449] Length = 342 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ ++ +I +R ++ G +S+++ R R+ Sbjct: 82 ITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRH-----F 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ A +I S Sbjct: 137 DALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPAMVILVAIVVTS 193 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 194 ILLLFVIPQFEDIF 207 >gi|294788003|ref|ZP_06753247.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC 29453] gi|294484296|gb|EFG31979.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC 29453] Length = 424 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ S+ + + V G S++++ S+ +Y Sbjct: 93 LCTMMKAGLPLMQAFDIVAKGHSNASMTNLLMSVRADVEQGTSMADAFSKHPKY-----F 147 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S F + + GG L L L+ + + +K KV++ A + L + Sbjct: 148 SKFYCNLVGAGEAGGVLDSLLDKLATYMEKTEAIKKKVKSALTYPIAILVVAVVLVIVMM 207 Query: 142 TLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVM 179 V + + P ++G++ AF+ G +++ Sbjct: 208 MFVLPEFKKVYDSMGAKLPPLTEFMMGISNAFVAHGALII 247 >gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 411 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 18/162 (11%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSE 51 +++ K+R L D+ + + + AG+ + A I + + P E Sbjct: 250 QNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERIAAGYEKTVQTGNRKARPAYEE 309 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRIL 109 I G++ + R LQ + ++ + G NL AL + Sbjct: 310 MCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQNRKTGSKNLKSALELEMVSAF 369 Query: 110 RDRKNMKAKV------QALSMEAKASAWIIGSLPFCVSTLVY 145 RKN+ K+ + L ++ + +Y Sbjct: 370 EQRKNLAKKLGEEAGTKLLLPLFLMLGVVMIMIVVPAFLAIY 411 >gi|168216750|ref|ZP_02642375.1| bacterial type II secretion system protein F [Clostridium perfringens NCTC 8239] gi|182381171|gb|EDT78650.1| bacterial type II secretion system protein F [Clostridium perfringens NCTC 8239] Length = 401 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L ++ ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|289627841|ref|ZP_06460795.1| general secretion pathway protein F [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 337 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196 >gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQH 60 I+ R V +R +P+ +A+ I ++ R++F R V Q Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIAKDAAAQ-RTDFGRRFVARMQE 187 Query: 61 LGLS-LSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MK 116 + L +++ + + E++ F I G+L++ L R + + ++ Sbjct: 188 ARVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVE 247 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 A+ A+ ++ + + ++ + F Sbjct: 248 AEKNAMQLKLRMMSVVMFVYILGWAGYFAF 277 >gi|254508850|ref|ZP_05120960.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16] gi|219548236|gb|EED25251.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16] Length = 408 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++++ G LS+++ + V Sbjct: 77 LATMLMTGVPLIQALKLVADNHRKAEMKSILSQIVKGVESGTPLSKTLRTASTHFDTLYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL+E ++ + +KAKV + S +I +L Sbjct: 137 DLVATG-----EQSGNLAEVFERIATYREKSEQLKAKVIKALIYP--SMVVITALSV-TY 188 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 189 LMLTVVIPEFESMF 202 >gi|227826590|ref|YP_002828369.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|229583754|ref|YP_002842255.1| type II secretion system protein [Sulfolobus islandicus M.16.27] gi|238618676|ref|YP_002913501.1| type II secretion system protein [Sulfolobus islandicus M.16.4] gi|227458385|gb|ACP37071.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|228018803|gb|ACP54210.1| type II secretion system protein [Sulfolobus islandicus M.16.27] gi|238379745|gb|ACR40833.1| type II secretion system protein [Sulfolobus islandicus M.16.4] Length = 616 Score = 39.7 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 3/183 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 + L + R + P + +R+GL + ++ S+ V + Sbjct: 117 LSQLTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176 Query: 60 H-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 LG + +I + Y P + + F T + G + + + ++ + A Sbjct: 177 KYLGEGVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLDTMEAKTKDILKNIETLAS 236 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177 A ++ A ++I ++ + L ++ A + LI ++ Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPIMAIFAMIMIPLINLL 296 Query: 178 VMR 180 + Sbjct: 297 FIW 299 >gi|285019423|ref|YP_003377134.1| general secretion pathway protein f [Xanthomonas albilineans GPE PC73] gi|283474641|emb|CBA17140.1| probable general secretion pathway protein f [Xanthomonas albilineans] Length = 404 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 6/142 (4%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + AG P+ A+++++ D + + + G LS ++ R Sbjct: 66 ALVQFTQQLATLLGAGQPLDRALSILLELPEDERSKRTIGDIRDAVRGGAPLSTALER-- 123 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG+L + L L+ L + ++ +V + ++ Sbjct: 124 ---QHGLFSRLYINMVRAGEAGGSLHDTLQRLAEYLERSRELRGRVINALIYPAILVSVV 180 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 G + V L Sbjct: 181 GCALLFLLGYVVPQFAQMYESL 202 >gi|237802035|ref|ZP_04590496.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024891|gb|EGI04947.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 405 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++R + +KAK++ ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVARYKEKTEKLKAKIKKAMT---YPIAVLIVAMIVSG 186 Query: 142 TLVYFTSPGYMNVL 155 L+ P + +V Sbjct: 187 ILLIKVVPQFQSVF 200 >gi|18310825|ref|NP_562759.1| fimbrial assembly protein [Clostridium perfringens str. 13] gi|18145507|dbj|BAB81549.1| probable fimbrial assembly protein [Clostridium perfringens str. 13] Length = 339 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+ + ++ +I D E +R+ G +LS++ P Sbjct: 19 VKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|312126627|ref|YP_003991501.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor hydrothermalis 108] gi|311776646|gb|ADQ06132.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor hydrothermalis 108] Length = 252 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K + + R K + + ++AGL + AVI +P + F + T Sbjct: 92 KEIERTRKNKLRSSIADIALMCELGLKAGLSLDRIFAVIAETIVEPRYKDAFLQAAATYK 151 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 ++ + + + + L E+ + ++G + ++L S++ ++ + Sbjct: 152 TTHNIEDCFTILRSQLDLPELEILKRALLEVEKVGLSGIQSLEVFSQV-ETMNKIEQIYK 210 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 + + I ++ F + ++ +F Sbjct: 211 KSDKARSYTTYAIVAMVFALISIYFF 236 >gi|4680723|gb|AAC23600.2| type IV pilin biogenesis protein [Vibrio vulnificus] Length = 409 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|254228552|ref|ZP_04921977.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|262392664|ref|YP_003284518.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|151938934|gb|EDN57767.1| general secretion pathway protein F [Vibrio sp. Ex25] gi|262336258|gb|ACY50053.1| general secretion pathway protein F [Vibrio sp. Ex25] Length = 405 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S + E+ Sbjct: 74 LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + G+L L L+ + +R+ M++K+ Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166 >gi|169347023|ref|ZP_02865965.1| bacterial type II secretion system protein F [Clostridium perfringens C str. JGS1495] gi|169296706|gb|EDS78835.1| bacterial type II secretion system protein F [Clostridium perfringens C str. JGS1495] Length = 401 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L ++ ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMADYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC 15703] gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis L2-32] gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis L2-32] Length = 171 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 21/53 (39%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 P L+++ ++R G + A+ + R E + G+ +E+ Sbjct: 40 LPLILEMLSVAIRQGASIPRALITVGNIVEGEFGGGLRSAGERLNSGMPWNEA 92 >gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter tundripaludum SV96] Length = 404 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 17/164 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + +GLP+ ++ V++ + ++ V RV+E G +L++++ + Sbjct: 73 LATLLESGLPLDKSLLVLIDLTEDNERVTKLIGRVLEKVKGGATLADALEK-----QSGI 127 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 S F + + GG+L E L LS L + +K V S A ++ + Sbjct: 128 FSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSRELKETV---STALIYPAILLIMSLASL 184 Query: 141 STLVYFTSPGYMNVLINDPRGHML-----LGVAAAFMLIGIMVM 179 ++ F P + + + G L + V A L M Sbjct: 185 FVMLTFVVPQFSEMF--ESAGKALPVSTQIVVGLAEWLQSYWWM 226 >gi|207725097|ref|YP_002255494.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] gi|206590327|emb|CAQ37288.1| general secretion pathway gspf-related protein [Ralstonia solanacearum MolK2] Length = 391 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AGL V +A+ + + P RS V+ G LS + M P + ++ Sbjct: 66 LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 121 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++I + NL ++L+ ++AK+ + S+ A + ++ + V Sbjct: 122 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 179 >gi|206578970|ref|YP_002240369.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342] gi|206568028|gb|ACI09804.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342] Length = 404 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80 + V AG+P+ A+ + Q P+R+ V G SL+E++ Sbjct: 73 LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 126 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ ++A++Q +A ++ + V Sbjct: 127 FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQ----QAMIYPIVLTLVAISV 182 Query: 141 STLVYFT 147 ++ T Sbjct: 183 IAILLST 189 >gi|17548370|ref|NP_521710.1| general secretion pathway GSPF-like transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430616|emb|CAD17300.1| probable general secretion pathway gspf-related transmembrane protein [Ralstonia solanacearum GMI1000] Length = 395 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AGL V +A+ + + P RS V+ G LS + M P + ++ Sbjct: 70 LEAGLSVFEALETLHEKEKRPFSRSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 125 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++I + NL ++L+ ++AK+ + S+ A + ++ + V Sbjct: 126 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 183 >gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] Length = 276 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSL 65 RT+ F N L I+ V +G+ + + + + DP + EF+ +++ G+ + Sbjct: 87 RTSHFERYLANTLMIMTPLVASGVTLEELIDTLAIIERDPYIAREFKIILKDAREGGMDI 146 Query: 66 SESISRMVRYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + +P + S + + + L L L L R ++ +V + Sbjct: 147 LTALRASLNRVPSRTYNEVFSLITETYLISANLADILMLKLEYLVRNKYNKLRSATQVLS 206 Query: 122 LSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L ME +A ++ L + + P Y+ + P +L+ ++G VM Sbjct: 207 LFMEVYLVTALLLPILLVLIIVTISPLGPIYLGSITLSPTLVLLITTLIYSPVMGY-VMY 265 Query: 181 LMIN 184 L+I+ Sbjct: 266 LLID 269 >gi|319937245|ref|ZP_08011652.1| type II secretion system protein [Coprobacillus sp. 29_1] gi|319807611|gb|EFW04204.1| type II secretion system protein [Coprobacillus sp. 29_1] Length = 396 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 9/176 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 L D + + +G+ + + +I +++DP +++ ++ V GLSLS ++ Sbjct: 56 LKDLSEFCRELGTMLSSGISLIMTINIITKRTTDPKLQAVYKDVYVKLQQGLSLSSALEA 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P ++ F S+ G + LS ++ KV++ + Sbjct: 116 QGELFPSLMINMF-----RASESTGMMDRTAMKLSVQFDKDNKLQNKVKSAMLYPMILIV 170 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + V T++ P + +V P + + + +I V Sbjct: 171 VTVCVVIAVFTMIL---PNFFDVFEGTPIPLITQIMFGISKAMTAYWEWFLIGILV 223 >gi|229588337|ref|YP_002870456.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25] gi|229360203|emb|CAY47060.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25] Length = 383 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 7/122 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A +I PVR + + + G SL+E++ + RY E+ Sbjct: 53 LATLLKAGIPLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFD--EL 110 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + ++A+++ +M + ++ SL V Sbjct: 111 Y---CNLVAAGEQAGALETLLERVAIHREKSEQLRARIKK-AMTYPIAVLVVASLVTGVL 166 Query: 142 TL 143 + Sbjct: 167 LI 168 >gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7] Length = 404 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 29/177 (16%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VR+GLP+ +A+ + QS P +RS V G +L+ +S P Sbjct: 74 LATLVRSGLPIEEALGTVARQSEKPRIRSMLMAVRTRVMEGHTLARGLSDFPHVFP---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + T + + G+L L L+ +R+ M+ K+Q A + Sbjct: 130 DIYRTTVE-AGEQSGHLEVVLERLADYTENRQQMRQKIQLALF---YPAILTAMALLVTI 185 Query: 142 TLVYFTSPGYMNVL--------------------INDPRGHMLLGVAAAFMLIGIMV 178 L+ + P + V + D MLLG+ A M +G ++ Sbjct: 186 ALLAYVVPEVVQVFEGIGQELPWLTRTLIAVSDGLRDYGLWMLLGLVLAGMAVGWLL 242 >gi|86148307|ref|ZP_01066602.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222] gi|85833932|gb|EAQ52095.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222] Length = 408 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S + G +S+++ Sbjct: 77 LATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAM-----RTASSHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + +L GNL++ L+ + +K+KV + ++ Sbjct: 132 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTM---VVAVALTVSY 188 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 189 LMLTMVIPEFESMF 202 >gi|83859852|ref|ZP_00953372.1| probable type II secretion system protein [Oceanicaulis alexandrii HTCC2633] gi|83852211|gb|EAP90065.1| probable type II secretion system protein [Oceanicaulis alexandrii HTCC2633] Length = 418 Score = 39.7 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + + +RAG P+ A ++ + + + + G LSE++SR Sbjct: 83 FMRQLATLLRAGAPLLGAFDSLLEEEPCRELSEQMNAIRSDLRAGGRLSEALSR-----H 137 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSL 136 + + +++ + + G+L L ++ + +V+ ALS A + G++ Sbjct: 138 MPTLPDYASRLVELGEATGSLDVRLNEVAAQMERDLTAAEEVRNALSYPAFLAVAGFGAV 197 Query: 137 PFCVSTLV 144 F +V Sbjct: 198 IFIFMFVV 205 >gi|323497016|ref|ZP_08102039.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326] gi|323317860|gb|EGA70848.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326] Length = 407 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 76 LATLVQSGMPLEECLRAVSEQSEKPRIRTMLLAVRSKVVEGYTLADSLADYPHIFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ + G+L L L+ +R+ +++K+Q +A ++ + Sbjct: 132 ELFRSMV-QAGEKSGHLDGVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVGIV 186 Query: 142 TLVY 145 + Sbjct: 187 AFLL 190 >gi|291455823|ref|ZP_06595213.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] gi|291382751|gb|EFE90269.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213] Length = 155 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V +LG L + + + M+ +A+ ++ +LP L Sbjct: 59 VSEELGCRAVPCLEAVLDVYSHMRLMQNMRAQAFAVPQATVGLLSALPAIAVVLGELMGA 118 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + L RG + L ++G++ MR ++ Sbjct: 119 HPLLFLFGSQRGLVCLVSGGCCYVVGLVWMRALMR 153 >gi|30249579|ref|NP_841649.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30138942|emb|CAD85521.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 394 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 6/153 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 + ++ + AGL + + + +V + D V E ++++ G++ S ++ + Sbjct: 58 LSDFSQELLALLTAGLSLVEGIETLVEKEEDSVTRELLQQILARLREGVTFSRALEFYPQ 117 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + I Q G +L EAL+ ++ K+ S+ + G Sbjct: 118 VFPS----LYVATIRASEQTG-DLGEALSRYLVYQSQMDLVRKKLVGASIYPVLLLVLGG 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V + D +L + Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMGTDLPWMSMLLI 205 >gi|134298887|ref|YP_001112383.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134051587|gb|ABO49558.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 401 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 16/152 (10%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 K A F F +G+P+ ++ ++ Q+ + ++ + E G SL Sbjct: 63 KELALFCRQF-------ATLSSSGVPIVQSLYLLKEQTGNKALKGALEAIAEDLQGGKSL 115 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++S + S F + ++ G+L L L+ ++ K + Sbjct: 116 GQALSSHHKI-----FSAFFINMVEAGEMSGSLDHVLDRLADYFERAYELREKFKTAIT- 169 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 A+I+ + + F P + ++I Sbjct: 170 --YPAFIMSMAICTIGCVFIFVLPTFAQIIIE 199 >gi|217967556|ref|YP_002353062.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] gi|217336655|gb|ACK42448.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724] Length = 400 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 51/113 (45%), Gaps = 9/113 (7%) Query: 16 FPNALD---IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 P + +R+G+ +++ ++ + Q+ + + V + GLSLSE++S+ Sbjct: 60 LPELVLFTSQFATLLRSGIILTECLSTLASQTDNAYFKDVLLDVRKNVDAGLSLSEALSK 119 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 P F +++ ++ G+L L LS+ + ++ K+++ + Sbjct: 120 YPDVFP----KIFISLVRT-GEVTGSLDLMLDRLSKYFDSQHELREKIKSATT 167 >gi|121610838|ref|YP_998645.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121555478|gb|ABM59627.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 407 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ S++P V + G SLS + +Y Sbjct: 77 LATMMKAGVPLLQSFDIVGRGSTNPSVTKLLNDIRSDIETGTSLSGAFRHYPKY-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L L+ + + +K+++++ M A + + + Sbjct: 132 NELYCNLVEAGETAGILESLLDRLATYMEKTEAIKSRIKSALMYPSAVLCVAFVVVSLIM 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D LL +A + + + Sbjct: 192 VFVIPAFKEVFTSFGADLPPPTLLVMAISETFVHWWWL 229 >gi|311105840|ref|YP_003978693.1| general secretion pathway protein F [Achromobacter xylosoxidans A8] gi|310760529|gb|ADP15978.1| general secretion pathway protein F [Achromobacter xylosoxidans A8] Length = 401 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + A LP+ A++ + Q+ + + V + G LS +++ R E+ Sbjct: 71 LASLLAASLPLDAALSATLEQAEKKHIAAVLGGVRDDVRAGHKLSTALA--ARPRDFPEI 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L++ + L+ + +R +++KV + A + + + Sbjct: 129 Y---RALIGAGEESGDLAQVMEKLADYIEERNALRSKVLTAFIYPAVVACVSVIIVIFLL 185 Query: 142 TLV 144 V Sbjct: 186 GYV 188 >gi|149182919|ref|ZP_01861377.1| comG operon protein 2 [Bacillus sp. SG-1] gi|148849368|gb|EDL63560.1| comG operon protein 2 [Bacillus sp. SG-1] Length = 345 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 12/144 (8%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSE 67 F F + + +G+ ++ A+ + QS P+ E R+I+ +G S E Sbjct: 206 LKLFYTQF--FSREMSYLLNSGMSINQALTEVGSQSYRPLFKELAERMIQDLRIGKSFPE 263 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 S+ + VI + G L L S+ + + K ++ Sbjct: 264 SVEYFGLFTD-----GLIEVIR-HGERRGQLPRELFTYSQFCMETLEVSGKKLLSVIQ-- 315 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGY 151 A + F + P + Sbjct: 316 -PAVFLFIGVFILLIYFSIMIPLF 338 >gi|104783252|ref|YP_609750.1| type II secretion system protein F [Pseudomonas entomophila L48] gi|95112239|emb|CAK16966.1| putative type II secretion system protein F [Pseudomonas entomophila L48] Length = 400 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + V AG+P+ DA+A + Q P V+ L+ Sbjct: 53 RRQRLSRAQLCELTRQLATLVGAGIPLVDALATLERQLRQPA---LHAVLVALRGSLAEG 109 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++R + + + + G L + LA L+ L + + K + + Sbjct: 110 LGLARSLARQGQP-FTGLYCALVEAGERSGRLGQVLARLADHLEQVQRQRHKARTALI-- 166 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A ++G V L+ F P + + + + G++ Sbjct: 167 -YPAVLMGVSLAVVVGLMTFVVPKLTEQFAHSGQSLPFITSLLIGLSQGLV 216 >gi|168206103|ref|ZP_02632108.1| putative pilus biogenesis protein [Clostridium perfringens E str. JGS1987] gi|169343782|ref|ZP_02864781.1| putative pilus biogenesis protein [Clostridium perfringens C str. JGS1495] gi|169298342|gb|EDS80432.1| putative pilus biogenesis protein [Clostridium perfringens C str. JGS1495] gi|170662446|gb|EDT15129.1| putative pilus biogenesis protein [Clostridium perfringens E str. JGS1987] Length = 339 Score = 39.7 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+ + ++ +I D E RR+ + G +LS++ + P Sbjct: 19 VKSGMSIGRSLDLIKNTVKDKKYKESLRRIEKKVLNGEALSKAFKEEGKLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750] gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750] Length = 417 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANL 105 P E G+S + + R + +E ++++ + G + L L + Sbjct: 310 PAYDEMYEADCNMQAGISEAAAYERFGKKCDTREYMKLASLLQTNIKKGTSQLRVLLEHE 369 Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +++ AK++ K ++ L ++ ++ Sbjct: 370 VNESFEKRKNIAKIKGEEATTKLLFPMLLMLGVVMAIIMI 409 >gi|110800691|ref|YP_696959.1| type II secretion system protein F [Clostridium perfringens ATCC 13124] gi|168211644|ref|ZP_02637269.1| bacterial type II secretion system protein F [Clostridium perfringens B str. ATCC 3626] gi|110675338|gb|ABG84325.1| bacterial type II secretion system protein F [Clostridium perfringens ATCC 13124] gi|170710395|gb|EDT22577.1| bacterial type II secretion system protein F [Clostridium perfringens B str. ATCC 3626] Length = 401 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L ++ ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 297 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 18/151 (11%) Query: 28 RAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84 AG+ + + ++ ++ E R V G + E++ + + + Sbjct: 160 EAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQAREEALEEVAGIQASEGLGDL 219 Query: 85 STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 +++ S GG ++L L+ +LRDR+ + + + K S ++ Sbjct: 220 LKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRLSGKMS-----------LVMM 268 Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 F P + VL G +L +A A +G Sbjct: 269 VFLFPALLIVL----AGPAVLNLAGALATLG 295 >gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX] gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX] Length = 246 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%) Query: 37 VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96 VA + P+ + V LG + + + E++ ++ S G Sbjct: 127 VAAVAQALGGPLGTALDGVARQLRLGADPARAWQSLHAP---AELAAVGRALARASHTGA 183 Query: 97 NLSEALA-NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 L++ + + + R + ++ + A + LP V V + G ++ L Sbjct: 184 PLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLAAGLVSGL 243 >gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM 4359] gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM 4359] Length = 399 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + +A+ ++ Q + FR++I + + ++++ R + + Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQ--EVFSKRFRKIILEIAINVETGDTLADAFRKVGV 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + GG L L + K ++ +V++ +++ Sbjct: 123 --FDNVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSAMA---YPLFVLFFAVV 177 Query: 139 CVSTLVYFTSPGYMNVL 155 V + ++ P + Sbjct: 178 IVLVISFYILPNLVRAF 194 >gi|242277878|ref|YP_002990007.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] gi|242120772|gb|ACS78468.1| type II secretion system protein [Desulfovibrio salexigens DSM 2638] Length = 408 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 K + K+ F F + + LP+ A++ + Q+ + + Sbjct: 64 KRISYKQITSFTRQF-------ATLLGSSLPLVRALSFLRDQNEGTLLGEVIGTINSRVR 116 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ LS +++ +Y + + GG L +A+ L+ + ++++++KV Sbjct: 117 EGMPLSRALAEYPKY-----FDILYVSLVAAGETGGMLDQAMDRLAFMREAQEDLRSKV- 170 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 S A + ++ + T++ P + + Sbjct: 171 --SGAMIYPAIMFIAMVGAIITMMLLVVPRFAQMF 203 >gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 200 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 5/128 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP- 77 L+++ + AG + A+ ++ +S R V+ +G + P Sbjct: 64 MLELVAAMLDAGSSIGRALELVSMSASARYSESLRPVVSALAIGADWETAWRSSAVRQPG 123 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSL 136 + E+ + + G S L + LR + A+ +A S+ K + + SL Sbjct: 124 ILELR---DALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLCSL 180 Query: 137 PFCVSTLV 144 P + V Sbjct: 181 PAFICLGV 188 >gi|310658165|ref|YP_003935886.1| type II secretion system protein [Clostridium sticklandii DSM 519] gi|308824943|emb|CBH20981.1| putative Type II secretion system protein [Clostridium sticklandii] Length = 348 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 10/131 (7%) Query: 28 RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 ++G+P+ D + + DP ++ + + + G SL I + ++ P+ + ++ Sbjct: 24 KSGIPILDGMEIFAKDMMDPRLKEVAQDMQQQLAQGYSLHSVIEK-YKFFPV----YLAS 78 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++ + Q G NL + L LS + K++ ++ + + LV Sbjct: 79 MVKIAEQTG-NLQDELERLSDYYEQTDRLNNKIK---SAVTYPLILLVLMAGVILFLVLK 134 Query: 147 TSPGYMNVLIN 157 P + +L++ Sbjct: 135 VLPMFHEILLS 145 >gi|57233905|ref|YP_182063.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes 195] gi|57224353|gb|AAW39410.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes 195] Length = 401 Score = 39.7 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 13/164 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G + ++ ++ Q+++ + R ++ G SLS ++S+ + P Sbjct: 71 LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG+L L NL+ ++ + K+++ A + + + Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVVGILVLLLMV 185 Query: 142 TLVYFTSPGYMNVLIND-------PRGHMLLGVAAAFMLIGIMV 178 T V + + + G A + GI + Sbjct: 186 TFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFI 229 >gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium HP15] Length = 290 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 44/130 (33%), Gaps = 3/130 (2%) Query: 18 NALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + V AGL ++ +I + + R G + ++ + + Sbjct: 147 ELCQMTRMLVEAGLSPERSLKLISHQARELMPRLIRRIDRFNRVMESGADRTVALDELGK 206 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 L + + +++ LG ++ L + + + K + + A+ + ++ Sbjct: 207 NRNLTVLRNYVSLMKQSGTLGSKVAGGLDQIVEEAQHEERSNLKEETNKIGARMTVIMMV 266 Query: 135 SLPFCVSTLV 144 + + L+ Sbjct: 267 FMLPSLFLLI 276 >gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 405 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 V + A ++ + + L+ + P + Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196 >gi|237807312|ref|YP_002891752.1| type II secretion system protein [Tolumonas auensis DSM 9187] gi|237499573|gb|ACQ92166.1| type II secretion system protein [Tolumonas auensis DSM 9187] Length = 418 Score = 39.3 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 9/130 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ P+R + G S+++ + RY Sbjct: 87 IATMLTAGVPLVQTLRLLASSHEKRPMREMLSTICADIETGTPPSKALRQFPRY-----F 141 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ A +I + Sbjct: 142 DDLYCDLVASGEQSGALDAIFDRIAIYREKAEALKSKIKK---AMFYPATVIFVALVVSA 198 Query: 142 TLVYFTSPGY 151 L+ F P + Sbjct: 199 ILLIFVIPEF 208 >gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae PXO99A] Length = 405 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|94312325|ref|YP_585535.1| general secretion pathway protein F [Cupriavidus metallidurans CH34] gi|93356177|gb|ABF10266.1| general secretory pathway component, cryptic [Cupriavidus metallidurans CH34] Length = 405 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 16/159 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 ++ L + A F + +GLP+ +A+ + Q+ E + Sbjct: 60 VRRLSTQEQALFTRQL-------ASLIVSGLPLDEALGALADQAERQYVHELLAGIRAEV 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SLS ++++ + + + + G+L L L+ + R + +K+ Sbjct: 113 MGGSSLSVALAQHPK-----DFPDIYRALVSAGEHSGHLGMVLERLATYIETRNTLTSKI 167 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 + + ++ V L+ + P ++V N Sbjct: 168 RLAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANT 203 >gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118] gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118] Length = 405 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|148263980|ref|YP_001230686.1| type II secretion system protein [Geobacter uraniireducens Rf4] gi|146397480|gb|ABQ26113.1| type II secretion system protein [Geobacter uraniireducens Rf4] Length = 402 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 24/175 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++AGLP+ A+ I+ + + + E G +LS + + + P Sbjct: 72 LLVLIKAGLPIIQALDTILERVEKGKLGEILSEIREDVKGGAALSVAFEKHPKVFPH--- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + G+L + + L+ + + KV A +I V+ Sbjct: 129 --LYIASIQAGERTGDLPQTIRRYIAFLKKAEGFRKKV---LSALVYPAIVITVAFVAVT 183 Query: 142 TLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRL 181 L+ + P + V + + ++ I + R Sbjct: 184 LLLVYVVPTFSQVYADSGSSLPVPTQMLIAFTGILKKFFWAGVGLFILAIFIFRR 238 >gi|330900441|gb|EGH31860.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 405 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 58/160 (36%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + + Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKPEHFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ +A ++ ++ Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIK--KAMTYPTAVLVVAVIVSGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + V L V A + + Sbjct: 188 LLIKVV-PQFQTVFSSFGADLPLFTLMVIALSEFVQQWWL 226 >gi|218710510|ref|YP_002418131.1| type IV pilin assembly protein pilC [Vibrio splendidus LGP32] gi|218323529|emb|CAV19719.1| Type IV pilin assembly protein pilC [Vibrio splendidus LGP32] Length = 408 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S + G +S+++ Sbjct: 77 LATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAM-----RTASTHF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + +L GNL++ L+ + +K+KV + + ++ + + Sbjct: 132 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAVALTVSYLML 191 Query: 142 TLVYFTSPGYMNVL 155 T+V + Sbjct: 192 TMVIPEFESMFSSF 205 >gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus acidocaldarius LAA1] gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQHLGLS-LSESISRMVRYMPLQE 80 V +R +P+ +A+ I ++ R++F R V Q + + L +++ + + E Sbjct: 150 VSLLRRRIPLEEALWQIARDAAAQ-RTDFGRRFVARMQEVRVRALGDALHDLAEEFRVPE 208 Query: 81 VSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MKAKVQALSMEAKASAWIIGSLP 137 ++ F I G+L++ L R + + ++A+ A+ ++ + + ++ Sbjct: 209 LTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEAEKNAMQLKLRMMSVVMFVYI 268 Query: 138 FCVSTLVYF 146 + F Sbjct: 269 LGWAGYFAF 277 >gi|325107203|ref|YP_004268271.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324967471|gb|ADY58249.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 345 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 20/178 (11%) Query: 20 LDIIVRSVR----AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 L ++ RS+ +G+ A + +S S +R +++ G ++ S+ + Sbjct: 11 LALMCRSLSTLLDSGVAADKAFRIAGEKSGSATIRETSASIVDEIKRGNDIATSLEE-QQ 69 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + +++ V Q G L E L L+ + ++ + Sbjct: 70 VYP----ALMVSMVHVAEQTG-TLPEILRGLADHYENLVRLRKDFYQAISWPVIQLVLAV 124 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--------IMVMRLMIN 184 + + L+ + + I D G L G + A +G + M+ Sbjct: 125 FVIAGLIFLLGMIADSNQSEPI-DVLGWGLTGTSGALTWLGLVFGGAFSFFICYRMLQ 181 >gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ V+AG+P+ A+ I+ + + R+V + G SLS ++ R R P Sbjct: 72 MLVLVKAGMPIMQALNTILQRQDGSRLTEVLRQVRDDVKGGASLSTALERHGRLFP---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + + G+L + L+ + ++ KV Sbjct: 128 HLYIASVR-AGERTGDLINTTRRYIQYLKRVEAIRKKV 164 >gi|257874735|ref|ZP_05654388.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257808899|gb|EEV37721.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 285 Score = 39.3 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 17/154 (11%) Query: 32 PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTVI 88 V ++ ++V + + E ++I ++G + + ++ FF + Sbjct: 109 TVDQSLQLVVKRLDGELARELTQLIAALNVGSDPQRVSALLKELGERY-SADL-FFGQYL 166 Query: 89 SVQSQL----GGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 Q + G E L ++ +++L + +L K L + Sbjct: 167 D-QLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGVKIMTIAFLLLILLM 225 Query: 141 STLVYFTS---PGYMNVLINDPRGHMLLGVAAAF 171 Y + Y+ + G+ + + + Sbjct: 226 HGASYMMNGNLDQYIQGFSHHIIGYAVATICSVS 259 >gi|315227313|ref|ZP_07869100.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM 10105] gi|315119763|gb|EFT82896.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM 10105] Length = 307 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 12/171 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRV-IETQHLGLSLSESISRMV 73 + + ++ + G + DA + G + + V G S ++R+ Sbjct: 85 DFIAELISLLHNGSGMVDACQEMGGMVFAIPELTDDRMKAVLARRCGHGRSDRAYLTRLA 144 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 R + + LG + S+ L + + + K ++ + + ++ Sbjct: 145 RQ--------LVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSALSIPRLTVKVL 196 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 LP V TS VL P G + L +AA +G+ ++ ++ Sbjct: 197 LILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLLR 247 >gi|312143781|ref|YP_003995227.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus'] gi|311904432|gb|ADQ14873.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus'] Length = 403 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +D AG+ + DA+ ++ QS ++ +V + G+SL++++S Sbjct: 70 FSQQFAAMID-------AGISLVDALNILADQSDHKHLKKVLMQVRDDVETGVSLADAVS 122 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P E+ + + + GG L L L+ + + + V+ A Sbjct: 123 KHPDSFP--ELY---SQLIRAGESGGVLDTILNKLANHYDRQHELNSMVK---SALYYPA 174 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I+ V LV P ++ + Sbjct: 175 VILSVGLIVVIFLVTQVVPQFVGMF 199 >gi|188586711|ref|YP_001918256.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351398|gb|ACB85668.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 404 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F ++AG+ V D++ + Q + V E+ G SL+ES Sbjct: 71 FSRQF-------ATMIKAGVTVLDSLESLSEQMDSKKLSRGLVNVTESLRGGNSLAESFH 123 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P F +IS + G L + L ++ + K++ Sbjct: 124 EQKDVFP----ELFVNMISAGEEAGA-LEDVLERMAVHYEKEHQLLEKIK---SAMTYPV 175 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 ++G V LV + P + + Sbjct: 176 ILLGVAFLVVYFLVTYVLPEFAGIF 200 >gi|254426789|ref|ZP_05040496.1| general secretion pathway protein F [Alcanivorax sp. DG881] gi|196192958|gb|EDX87917.1| general secretion pathway protein F [Alcanivorax sp. DG881] Length = 405 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GLPV A++ + Q++ D + V G SL+ S R P E+ Sbjct: 74 LATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLARSFESFPRAFP--EM 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L + L L+ L R + V A+I+ + Sbjct: 132 YRATVA---AGEQSGHLEQVLEQLADYLETRHDTGRSVAQ---AMIYPAFIMVFASIVIM 185 Query: 142 TLVYFTSPGYMNVL 155 ++ F P + V Sbjct: 186 LMMTFVVPKLVAVF 199 >gi|93004899|ref|YP_579336.1| type II secretion system protein [Psychrobacter cryohalolentis K5] gi|92392577|gb|ABE73852.1| type II secretion system protein [Psychrobacter cryohalolentis K5] Length = 407 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P++ + ++ +P ++ ++ G + + ++ R RY Sbjct: 76 LATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F +++ + G L L ++ + +KAK++ Sbjct: 132 DLFCSLVD-SGEQSGALETMLERVATYKEKSELLKAKIKK 170 >gi|294055942|ref|YP_003549600.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615275|gb|ADE55430.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 428 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 9/162 (5%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +G+P+ DA+ V+ + S+P + E + G +L+ +++R RY + Sbjct: 102 SSGMPIGDAIKVLSQRISNPEQKELATAIWRDLSEGATLATALNRQPRYFASS-----VS 156 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + G+L+ LA + L +R ++ K+ A + T++ Sbjct: 157 FVIEAGEATGSLAPILAKVIEYLEERDAIRKKMLASMAYPLVVCTFALGVVILFITVLLP 216 Query: 147 TSPGYMNVLIN--DPRGHMLLGVAAAFMLIG-IMVMRLMINF 185 MN + +L+ ++ + G +++ L++ F Sbjct: 217 RIQDMMNKIGGEMTWSARILMDGSSFLINFGPYILIALILAF 258 >gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2] gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2] Length = 400 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%) Query: 29 AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P + + ++P V + G + ++ + P Sbjct: 276 AGIPFLQGLESVTETLANPFWSQRLALVQQDISSGKPIWLALKNSCEFSP------LCIQ 329 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAK---VQALSMEAKASAWIIGSLPFCVSTLV 144 + + G+L L NL+ ++ +AK + IIG+L + + Sbjct: 330 LVRTGEASGSLDAMLRNLAHHHGEKTLAQAKNLAALLEPALLVITGLIIGTLVVAMYLPI 389 Query: 145 Y 145 + Sbjct: 390 F 390 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 18/163 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + H + R+A+ + ++AGL +S +A++ Q ++ R + Sbjct: 52 ISHWSRTRSAETIHQL-------ATLLKAGLTLSTGLALLAEQHPSTQWQALLRTLAYDM 104 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G++LS S+S+ P + +L G L + L+ + ++ + KV Sbjct: 105 EQGITLSASLSQWQHVFPP-----LYQAMIRTGELTGKLDDCCFELAYQQKKQQQLADKV 159 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 + + II V ++ F P + + N P Sbjct: 160 KKAL---RYPIIIITMAVMVVFAMLQFVLPEFAAIYQTFNTPL 199 >gi|91224971|ref|ZP_01260230.1| general secretion pathway protein F [Vibrio alginolyticus 12G01] gi|91190217|gb|EAS76487.1| general secretion pathway protein F [Vibrio alginolyticus 12G01] Length = 405 Score = 39.3 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S + E+ Sbjct: 74 LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + G+L L L+ + +R+ M++K+ Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166 >gi|330940252|gb|EGH43384.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 242 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 5 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 64 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 65 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 116 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 117 VGVLGSLALLLAYVVPQFVPIF 138 >gi|319786265|ref|YP_004145740.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317464777|gb|ADV26509.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 419 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 7/159 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A+ +I G +P +R+ + G SL E+IS P+Q Sbjct: 89 MATMMKSGVPIVGALEIIAGGHKNPRMRNMIDTIRTDIEGGSSLYEAIS----RHPVQ-F 143 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +++K K++ + + + + Sbjct: 144 DELYRNLVRAGESAGVLETVLDTIATYKENIESLKGKIKKALFYPAMTIAVAIIVSAILL 203 Query: 142 TLVYFTSPGYMNVLIND-PRGHMLLGVAAAFMLIGIMVM 179 V D P ++ A+ FM+ +M Sbjct: 204 IFVIPQFEEVFQGFGADLPAFTKMIVAASNFMVSYWWIM 242 >gi|300867503|ref|ZP_07112154.1| type II secretion system protein [Oscillatoria sp. PCC 6506] gi|300334497|emb|CBN57322.1| type II secretion system protein [Oscillatoria sp. PCC 6506] Length = 375 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 9/128 (7%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+ + +AV+ Q S+P +++ + G LS ++ + F ++ Sbjct: 48 AGVAMVRCLAVLNEQCSNPKLKNALTSISADVEQGSELSTAMRKFPDVFD----QLFLSM 103 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + ++GG L E L L+ ++ ++++++ K ++ + F Sbjct: 104 VG-AGEVGGVLDEVLERLAVLMEKNHKTQSEIKSAMSYPKT---VLFIAIIIFFAMTIFL 159 Query: 148 SPGYMNVL 155 P + + Sbjct: 160 LPTFAKIF 167 >gi|261402162|ref|YP_003246386.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369155|gb|ACX71904.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 344 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 5/168 (2%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYM 76 AL +V +RAG + + + I + V E R +I ++ G SL E++ R Sbjct: 177 ALLYMVSILRAGASLPEVLESISKSEEYGIVSFEVRSIIRDVNIAGYSLVEALERAKLRT 236 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME--AKASAWIIG 134 + + + + G NL L L + + MK ++ + + Sbjct: 237 EIPLLKKLYDQMIIGYNKG-NLPMLLEKLYEDIVRQSMMKLDTSKFLIQNLGNLAFGVGL 295 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 LPF L + ++N + ++ GI V + Sbjct: 296 ILPFSGMILSTMIANQGFPGILNTLNLLLTKIGPLLTLIFGIFVKMKI 343 >gi|161612487|ref|YP_001586452.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234908|ref|ZP_02659966.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735161|ref|YP_002113159.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361851|gb|ABX65619.1| hypothetical protein SPAB_00177 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710663|gb|ACF89884.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291724|gb|EDY31074.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 400 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 28/178 (15%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAA 170 I+ V +++F P + + G ++L +A Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILFLAML 226 >gi|171914419|ref|ZP_02929889.1| type IV pilus biogenesis protein PilC [Verrucomicrobium spinosum DSM 4136] Length = 426 Score = 39.3 bits (91), Expect = 0.25, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 17/151 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70 F +D +GLP+ + V+ Q +P+ + + ++ G + SES+ Sbjct: 86 FTRQLATLID-------SGLPLLRGLTVLGRQEPNPIMKRTINTLADSVQTGSTFSESLQ 138 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + R + + G L L + L + + K++ + A Sbjct: 139 QFPRIYN---------KLYINMVKAGELGGVLELVLNRLAEYQEKAQKLKNKIVAAMVYP 189 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 I+ + + + + D G Sbjct: 190 MIVMIIAVGIMIFLMTVIVPKFEKIFEDMLG 220 >gi|331010776|gb|EGH90832.1| general secretion pathway protein GspF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 400 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|325920916|ref|ZP_08182809.1| Type II secretory pathway component [Xanthomonas gardneri ATCC 19865] gi|325548598|gb|EGD19559.1| Type II secretory pathway component [Xanthomonas gardneri ATCC 19865] Length = 405 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|166713412|ref|ZP_02244619.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzicola BLS256] Length = 405 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|24372011|ref|NP_716053.1| type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1] gi|24345872|gb|AAN53498.1|AE015489_11 type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1] Length = 423 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+++ RY V Sbjct: 91 IATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYV 150 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A ++ + Sbjct: 151 DLVA-----AGEHSGSLDVVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAILVTA 202 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 203 LLLLFVVPQFEDIF 216 >gi|303248629|ref|ZP_07334884.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302489979|gb|EFL49903.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 408 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 15/131 (11%) Query: 28 RAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +G+PV + ++V + + EFRRV + G LS +SR + P T Sbjct: 284 SSGVPVLTTIDILVETIGNAAISKEFRRVQDMIRTGQGLSAPLSRAKYFTP-----MVVT 338 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++SV + G NL + L+ +S + A+V + S + L ++ +V F Sbjct: 339 MVSVGEESG-NLDDMLSAISE------HYDAEVAY--AVKRLSDALGPVLIVGLAGVVGF 389 Query: 147 TSPGYMNVLIN 157 + + + Sbjct: 390 FALAIFLPMWD 400 >gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus catus GD/7] Length = 491 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 50/137 (36%), Gaps = 10/137 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---------DPVRSE 51 +K +++R + L +P + ++ + AG+ V + ++ + D + E Sbjct: 331 LKKRLEERNEQLLYAYPGFVHRMILMLGAGMTVRRSWNRLLDDNERLDSGHLEEDWLYRE 390 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 + G+ ++ + M LQ+ FS ++ + G + + + Sbjct: 391 MKYTRIQMESGVPEIQAYLEFGQRMELQQYKKFSQLLIQYIKRGSKGMQALMQQEAAEAE 450 Query: 111 DRKNMKAKVQALSMEAK 127 ++ AK + K Sbjct: 451 KQRRDLAKQLGETAGTK 467 >gi|269964605|ref|ZP_06178844.1| General secretion pathway protein F [Vibrio alginolyticus 40B] gi|269830732|gb|EEZ84952.1| General secretion pathway protein F [Vibrio alginolyticus 40B] Length = 405 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + Q+ P +RS V G L++S + E+ Sbjct: 74 LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + G+L L L+ + +R+ M++K+ Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166 >gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA 2018] Length = 396 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + AG + ++++++ + +R + + + G S+ +S+ +P Sbjct: 68 MSYMMNAGFNICESLSIMYDKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPY---- 123 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 FF +++ + + G NLSE NL +D+ + K++ + A + + Sbjct: 124 FFKSMLFIGEESG-NLSEVFRNLGEYYKDQWKTEEKIKNATT---YPAIVFAFTIIILVF 179 Query: 143 LVYFTSPGYMNVL 155 LV P ++ L Sbjct: 180 LVSKVIPRFVETL 192 >gi|317050497|ref|YP_004111613.1| type II secretion system F domain-containing protein [Desulfurispirillum indicum S5] gi|316945581|gb|ADU65057.1| Type II secretion system F domain protein [Desulfurispirillum indicum S5] Length = 401 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 15/132 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 ++ G+P++ A+ ++ +++P +R E + E + G ++ + Sbjct: 280 LQGGIPLAAAMEMVRDTTANPLLRQELQLAHELLNQGAPFHAALE------ACTIFPGLA 333 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + GG L + L + + K + A E L V Sbjct: 334 VQMARTGEEGGTLEQMLEKTATFYEQQAQQKLRTLAGYTE--------PLLLLLSGVFVL 385 Query: 146 FTSPGYMNVLIN 157 + G + + Sbjct: 386 ILALGILLPMWQ 397 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 9/149 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + + G+ ++ A++++ P + R+ + G S S + Sbjct: 68 FLHQLSALLGCGISLATALSMLATSMESPTWHTILTRMEQDLSRGQSASNTFR--SHRYA 125 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ F + +L G L E L + I+ ++ + + L + ++ SL Sbjct: 126 FGDLLPFLVEVG---ELSGRLEEMLLRAASIMESQREFRKR---LGDALRYPLIVLTSLL 179 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 V P + ++ LL Sbjct: 180 GAFVFAVTMIIPRFADIFARSEATLPLLT 208 >gi|168701870|ref|ZP_02734147.1| type IV fimbrial assembly protein PilC [Gemmata obscuriglobus UQM 2246] Length = 414 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 18/175 (10%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 +K+ F F D AGLPV ++ ++ Q +++ V++ G Sbjct: 72 KQKQLVTFTRQFSTLQD-------AGLPVLRSLRILERQMPPSALKNSMIDVVDDVESGS 124 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +LSE++SR + S + + GG L L L+ L +++K+K+ Sbjct: 125 ALSEALSRHPK-----AFSKLYVNMVRAGEAGGALEIILQRLADFLEKAQSLKSKIIG-- 177 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A +I ++ ++ P + + D G L + + + Sbjct: 178 -AMVYPAVVIFVAVAILTFIMVAIIPKFKKIF--DEFGMTLPWATLTLIRVSNWM 229 >gi|44004389|ref|NP_982057.1| hypothetical protein BCE_A0050 [Bacillus cereus ATCC 10987] gi|42741455|gb|AAS44900.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 276 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 117 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233 >gi|330966306|gb|EGH66566.1| general secretion pathway protein F [Pseudomonas syringae pv. actinidiae str. M302091] Length = 400 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|330875838|gb|EGH09987.1| general secretion pathway protein F [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 400 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|262163781|ref|ZP_06031521.1| general secretion pathway protein F [Vibrio mimicus VM223] gi|262027761|gb|EEY46426.1| general secretion pathway protein F [Vibrio mimicus VM223] Length = 393 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +G+P+ + ++ S+D + +R+ G SLSE+I+ P Sbjct: 62 LRELATLRESGMPLDQCINSLLENSTDRQMALVLKRLHSDIESGSSLSEAIAAQPDSFPY 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + S+++ + + G L EAL ++S + + + ++V++ + + F Sbjct: 122 ----YVSSMLRL-GEASGQLGEALFSISERIEREEKLVSEVKSALTYPAFLLIVCVATIF 176 Query: 139 CVSTLVY 145 + V Sbjct: 177 FMFLYVI 183 >gi|47568977|ref|ZP_00239668.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|47554361|gb|EAL12721.1| conserved hypothetical protein protein [Bacillus cereus G9241] Length = 276 Score = 39.3 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 117 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233 >gi|300690940|ref|YP_003751935.1| type II secretion system protein F (gspF) [Ralstonia solanacearum PSI07] gi|299078000|emb|CBJ50642.1| putative type II secretion system protein F (gspF) [Ralstonia solanacearum PSI07] Length = 397 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R K + +RAGL VS+A+ + + P +R++ + Sbjct: 49 LARSLQNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL LSES+ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 107 SGLPLSESMKQVEGVFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV- 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 161 --VSAAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 214 >gi|225076115|ref|ZP_03719314.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens NRL30031/H210] gi|224952559|gb|EEG33768.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens NRL30031/H210] Length = 177 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 16/125 (12%) Query: 1 MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 +K K+R + F ++AGLP+ A ++ S+P +E + Sbjct: 62 VKTARKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + + ++ + P + F + + GG L L L+ + + Sbjct: 112 LTQIRSDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAI 170 Query: 116 KAKVQ 120 K K++ Sbjct: 171 KKKLK 175 >gi|73749037|ref|YP_308276.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1] gi|73660753|emb|CAI83360.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1] Length = 401 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 16/164 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G + ++ ++ Q+++ + R ++ G SLS ++S+ + P Sbjct: 71 LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG+L L NL+ ++ + KV++ + + Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALT---YPGVVAVVGILVLL 182 Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +V F P + M + P +L+G++ F G+ V+ Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-RILIGLSDFFESWGLYVI 225 >gi|307595210|ref|YP_003901527.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550411|gb|ADN50476.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 302 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 64/163 (39%), Gaps = 2/163 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + + + + L D P + +I + +G P+ ++ + I + +G Sbjct: 70 YRLWRVNNEILVDMPAVVRVIRDGLGSGQPLVGVAEMLTRVGKGRLGRIIAEAITKESMG 129 Query: 63 LS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + E ++ + R + ++ + ++ + G L E L + L D + + + Sbjct: 130 ITTMKEGLAEVSRELGNNYLAVLAVILDTAIRSGARLQETLDMAYKSLEDMVSYQLEKAN 189 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHM 163 A +++ ++ ++ ++Y P + I+ G + Sbjct: 190 QVKPYLALIYVVMAIYVVLAGIIIYLMMPSIGKIAISTSAGAI 232 >gi|227877250|ref|ZP_03995323.1| competence protein [Lactobacillus crispatus JV-V01] gi|256848888|ref|ZP_05554322.1| competence protein [Lactobacillus crispatus MV-1A-US] gi|262045780|ref|ZP_06018744.1| competence protein [Lactobacillus crispatus MV-3A-US] gi|312977666|ref|ZP_07789413.1| competence protein [Lactobacillus crispatus CTV-05] gi|227863106|gb|EEJ70552.1| competence protein [Lactobacillus crispatus JV-V01] gi|256714427|gb|EEU29414.1| competence protein [Lactobacillus crispatus MV-1A-US] gi|260573739|gb|EEX30295.1| competence protein [Lactobacillus crispatus MV-3A-US] gi|310895405|gb|EFQ44472.1| competence protein [Lactobacillus crispatus CTV-05] Length = 333 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 22/190 (11%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 MK++ + K + LD + S+ G + +++ ++ R+ Sbjct: 1 MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-CQLMERMASR 58 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115 G S S + ++ FS Q GNL E L +L+ + R ++ Sbjct: 59 MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K++ E + + + + F S + + +D G M++ +L+G Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163 Query: 176 IMVMRLMINF 185 + ++ Sbjct: 164 LYFFAKIVTL 173 >gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans SRS30216] Length = 305 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R A F + +D++ +G S+A+A P + + + G + + Sbjct: 157 RRADFRAAITSYMDLVAMRAASGAGASEALADAARIGRGWPFARVRLALADARISGYTPA 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R+ + + E+ S + + G L +R LRD + V Sbjct: 217 RALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLA---VAQGKAGE 273 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 ++ +I L + +++ P N + Sbjct: 274 RSQTMVIAQLLLALGFMLFVLYPPVSNFMT 303 >gi|293400854|ref|ZP_06644999.1| putative type II secretion pathway protein XcpS [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305880|gb|EFE47124.1| putative type II secretion pathway protein XcpS [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 397 Score = 39.3 bits (91), Expect = 0.27, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 11/173 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 L + + + + +G+ + A++++V + +P +++ + + G++LS ++ Sbjct: 57 LKELSDFSRQLGTMIGSGVSLIRAISILVQRQKNPKIKAIYTDIYRKLQQGMTLSYAMEE 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + + G S + ++ + + +++ A Sbjct: 117 QGKAFPE---------LMINMYRTGETSGQMERVAMTMALQYEKDNRIKGKVRNAMIYPI 167 Query: 132 IIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ + F V + F P + V + V A + ++I Sbjct: 168 ILICVTIFVVIGVFTFIIPSFSKVFNGMELPMITKIVNAISEAMLAYWYWMLI 220 >gi|168464305|ref|ZP_02698208.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632934|gb|EDX51388.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 400 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ V +++F P + + N P + G+ A G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221 >gi|160936832|ref|ZP_02084197.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC BAA-613] gi|158440213|gb|EDP17959.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC BAA-613] Length = 403 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 65/175 (37%), Gaps = 12/175 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 P + + AG+P+S A+ V G + D ++ + E+ H G +LSE++ Sbjct: 65 QRQLPLLCRQLAAMLTAGVPLSRALEVSAGSARDKTLKVTLAGLRESIHKGRTLSEAMEE 124 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M P + + + G L E L ++ + + KV+ Sbjct: 125 MKGVFP----NLLVYMTRT-GESSGRLDELLHKMAGYYGREEELNGKVR---AAMTYPVI 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAAAFMLIGIMVMRLMI 183 + ++ P + ++L + ++ ++ + G++ + L++ Sbjct: 177 LFSITVLAAVFMLTTVLPQFASMLQEQELPWITRMMMRLSFSLRSRGVLYIMLIL 231 >gi|299537659|ref|ZP_07050950.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1] gi|298726911|gb|EFI67495.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1] Length = 246 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 55/176 (31%), Gaps = 8/176 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRS---VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ K+ L + ++ G V A ++ I+ Sbjct: 60 QNRQLKKYQMHLSELLKYVTNMIFFLQTGENVLHAFKETKATVHPDIQKAIEISIQQLEK 119 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L+ + + F + +Q + GGN + + + + + + ++ Sbjct: 120 EAQLNT---KQFEKYDFPTLDQFHQNLKIQYEHGGNPGDLFSQIHKNMIFELKKRDELYR 176 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + +++ + +S ++ F + +N G+ LGV + + Sbjct: 177 KRRGFAMAVYMLLGMVMGISLMLRFIVGELWDTFLN--VGYAGLGVLLITQVFAFL 230 >gi|269103693|ref|ZP_06156390.1| general secretion pathway protein F/type II secretory pathway component PulF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163591|gb|EEZ42087.1| general secretion pathway protein F/type II secretory pathway component PulF [Photobacterium damselae subsp. damselae CIP 102761] Length = 406 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 13/158 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V+A +P+ + + + Q+ P +++ V G +L++S++ Sbjct: 75 IATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEFPHI-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ +R+ M++K+ QA+ + I + F + Sbjct: 130 DQLFRAMVAAGEKSGHLDAVLNRLADYAENRQQMRSKLQQAMIYPTMLTLIAISVVSFLL 189 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +T+V P ++ + G L + + V Sbjct: 190 ATVV----PKIVDQFVRT--GQPLPTITEVLLAASNFV 221 >gi|167957566|ref|ZP_02544640.1| pilin biogenesis protein [candidate division TM7 single-cell isolate TM7c] Length = 410 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P++ ++ + + +PV R V G+SL++++ + + Sbjct: 75 LSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGKHPKV-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L E L L+ ++ K++ ++ Sbjct: 130 SDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIK---SAMTYPVVLVVISVLAFF 186 Query: 142 TLVYFTSP 149 L+ F P Sbjct: 187 GLMIFVIP 194 >gi|27364988|ref|NP_760516.1| type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6] gi|27361134|gb|AAO10043.1| Type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6] Length = 408 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1] gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1] Length = 612 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S+ +++ + P + + F + G + + ++ + D+ ++A + Sbjct: 182 LGESVEDAMLHASQISPSKLLKDFFLAYVTAVRTGAPVINTIEAKAKDILDQLQLRASLA 241 Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSP 149 A + A +++I G + F + ++ P Sbjct: 242 ADRLSGIAESYVIWLSSGYIMFFLMMVLEAIFP 274 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + I +RAGLP + I + LG L ++ + Sbjct: 393 FMRAIAEGLRAGLPPETIIKNIKDSKEMGKFGKILNEIYAYITLGYPLKDAFRKGAER-- 450 Query: 78 LQEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + +++S+ ++G E + +++R + + +K E+K ++ Sbjct: 451 IMDFTSKISLVSLADMMEIGSMTPETVESIARQIESQIKIKR-----DYESKVKILLVTP 505 Query: 136 LPFCVSTLV 144 + +L+ Sbjct: 506 YMGVILSLI 514 >gi|317493265|ref|ZP_07951687.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918658|gb|EFV39995.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 397 Score = 39.3 bits (91), Expect = 0.28, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVRYM 76 ++ + + AGLP++ + ++ P+R +R+ + G+ LSE++ Sbjct: 64 IEQLATLLHAGLPLAKCLTLLAE--GHPLRHWQCLLQRLASQINNGIPLSEAMMDYSSIF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P +T +L G L E+ LS + + +KAK+ + A ++ Sbjct: 122 PPVYGKTIATA-----ELTGRLDESCLALSEQQKRQVELKAKIVKAL---RYPALLLSVT 173 Query: 137 PFCVSTLVYFTSPGY 151 ++ ++ + P + Sbjct: 174 VIVITIMLVWVLPQF 188 >gi|297537652|ref|YP_003673421.1| Type II secretion system F domain-containing protein [Methylotenera sp. 301] gi|297256999|gb|ADI28844.1| Type II secretion system F domain protein [Methylotenera sp. 301] Length = 393 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+PV A+ ++ G +R + + + G +S ++ + Sbjct: 259 QLARFYRTLGMLLRGGIPVVSALEMVSGLLQPILRRQLVQASNSIREGKPISHAMEQFGL 318 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108 P+ + + V + GG + E ++ Sbjct: 319 TTPVA-LRL----LRVGERTGG-MGEMTERIANF 346 >gi|115524668|ref|YP_781579.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115518615|gb|ABJ06599.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 400 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +R+GLP+ +A+ V S + ++ G +L +++ R Sbjct: 68 FLGELSLVLRSGLPLDEALDVTGRDLSPRLAGTATQLRHDIVAGSTLVQALGRHKDVFSD 127 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++ +++ G+L LA ++ +R+ + + + A++I S Sbjct: 128 D-----IIAMTRVAEVTGDLDGVLAAIAG---ERERGHRLNEKVQGALRYPAFLISSAVL 179 Query: 139 CVSTLVYFTSPGYMNVL 155 + + P + N+ Sbjct: 180 VLLFFLVQVIPQFSNLF 196 >gi|212638472|ref|YP_002314992.1| type II secretory pathway component PulF [Anoxybacillus flavithermus WK1] gi|212559952|gb|ACJ33007.1| Type II secretory pathway component PulF [Anoxybacillus flavithermus WK1] Length = 403 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L ++AG+ + DA ++ Q+ ++ + E G LS +++ P Sbjct: 69 LRQFATLLKAGVTIVDATRILAEQTESKALKKALVHIEEQLRSGQPLSTAMTDHPNIFPP 128 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + + GN+ E L L+ + K+ + Sbjct: 129 -----LVINMIRAGEASGNMDETLERLADHFEKVHRTRQKIVSALA 169 >gi|21244268|ref|NP_643850.1| general secretion pathway protein F [Xanthomonas axonopodis pv. citri str. 306] gi|21109914|gb|AAM38386.1| general secretion pathway protein F [Xanthomonas axonopodis pv. citri str. 306] Length = 391 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 40 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 97 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 98 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 152 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 153 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 189 >gi|242238913|ref|YP_002987094.1| general secretion pathway protein F [Dickeya dadantii Ech703] gi|242130970|gb|ACS85272.1| general secretion pathway protein F [Dickeya dadantii Ech703] Length = 408 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P +R+ V G SL+E++ Sbjct: 77 LATLVAAALPLEEALDAVARQSEKPRLRALMAAVRAKVVEGHSLAEAMGNFPN-----SF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|200387629|ref|ZP_03214241.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604727|gb|EDZ03272.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 400 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ V +++F P + + N P + G+ A G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221 >gi|190015135|ref|YP_001966620.1| conserved hypothetical protein [Bacillus cereus] gi|190015401|ref|YP_001966946.1| hypothetical protein pPER272_0075 [Bacillus cereus] gi|116584811|gb|ABK00926.1| conserved hypothetical protein [Bacillus cereus] gi|116585082|gb|ABK01191.1| conserved hypothetical protein [Bacillus cereus] Length = 276 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 117 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233 >gi|228925183|ref|ZP_04088293.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834522|gb|EEM80051.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 288 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAASLNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|227544183|ref|ZP_03974232.1| competence protein [Lactobacillus reuteri CF48-3A] gi|300908178|ref|ZP_07125644.1| type II secretion system protein [Lactobacillus reuteri SD2112] gi|227185819|gb|EEI65890.1| competence protein [Lactobacillus reuteri CF48-3A] gi|300894605|gb|EFK87961.1| type II secretion system protein [Lactobacillus reuteri SD2112] Length = 344 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 N ++ + G V +A+ I + + + + G S ++S+ + Sbjct: 20 QQQANFFLLLADLLSVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-- 76 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +++ F ++ ++ GNL++ L+ + +IL R+ + K+ +L + ++ Sbjct: 77 ---EVKD-DLFYQLLL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILL 127 Query: 134 GSLPFCVSTLVYFTSPG 150 G L + L+ F P Sbjct: 128 GMLGVVICGLILFVFPE 144 >gi|88704168|ref|ZP_01101882.1| general secretory pathway protein F [Congregibacter litoralis KT71] gi|88701219|gb|EAQ98324.1| general secretory pathway protein F [Congregibacter litoralis KT71] Length = 393 Score = 38.9 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ ++ V++ +S P + + V+++ G +LS ++ Sbjct: 63 LAVLLRAGLPLDRSLKVLIEMASLPSMGALLSDVLKSVKDGKALSVALEPYADLFG---- 118 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ +++ + G +S L L L + K + V A ++ + Sbjct: 119 RFYLSMLR-SGEASGEMSAVLDRLVAHLEESKATRDSV---VSALIYPAILLVVAVLSIV 174 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F P L ND Sbjct: 175 VMLAFVVPQ-FESLFND 190 >gi|269129022|ref|YP_003302392.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268313980|gb|ACZ00355.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 247 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%) Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ R+ + + + + G + +A+L+ LRD + + +V A Sbjct: 122 IPAALERLSARPGAEGLRLLGACWRIGADSGATFATVIADLAAALRDEEAQRREVAAQLA 181 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +A+A ++ LP + + L G + L + ++G+ + Sbjct: 182 GPRATARLLAGLPLLGLGMAAALGADPLAFLCGTLPGLICLTLGLGLDVLGLWWTNRLAR 241 >gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC 700975] gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC 700975] gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975] Length = 185 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 9/127 (7%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++ + AGL AV + S + +G+ ++ + S + L+ Sbjct: 56 LELFAACLEAGLSTRSAVLAVAEASPQ-----WSEAAALIGVGVPMNTAWSALASQPHLE 110 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138 E+ + + + G ++ L LR + +A +A +A + + LP Sbjct: 111 ELVRLT---QLSGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCFLPA 167 Query: 139 CVSTLVY 145 + + Sbjct: 168 FLVLGLI 174 >gi|254507326|ref|ZP_05119462.1| general secretion pathway protein F [Vibrio parahaemolyticus 16] gi|219549786|gb|EED26775.1| general secretion pathway protein F [Vibrio parahaemolyticus 16] Length = 407 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++G+P+ + + + QS P +R+ V G +L++S++ Sbjct: 76 LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVVEGYTLADSLADYPHIFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +++ + G+L L L+ +R+ +++K+Q +A ++ + Sbjct: 132 ELFRSMV-QAGEKSGHLDGVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVGIV 186 Query: 142 TLVY 145 + Sbjct: 187 AFLL 190 >gi|37680964|ref|NP_935573.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016] gi|37199714|dbj|BAC95544.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016] Length = 408 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|114321539|ref|YP_743222.1| general secretion pathway protein F [Alkalilimnicola ehrlichii MLHE-1] gi|114227933|gb|ABI57732.1| general secretion pathway protein F [Alkalilimnicola ehrlichii MLHE-1] Length = 404 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VR+GLP+ D + + Q+ P ++S V G +L++ + P ++ Sbjct: 74 MATLVRSGLPLEDVLRTVSRQTDKPRLKSLMLAVRNRVLEGHTLAQGLGDFPHVFP--DI 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140 + + G+L L L+ R+ M+ KVQ A I+ + V Sbjct: 132 YRTTVA---AGEKSGHLDIVLERLAEYTEGRQQMRQKVQM----ALFYPIILTVMAIGVT 184 Query: 141 STLVYFTSPGYMNVL 155 TL+ + P + V Sbjct: 185 LTLLTYVVPEVVGVF 199 >gi|167032060|ref|YP_001667291.1| general secretion pathway protein F [Pseudomonas putida GB-1] gi|166858548|gb|ABY96955.1| general secretion pathway protein F [Pseudomonas putida GB-1] Length = 400 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 20/191 (10%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + AG+P+ DA+A + Q P V+ L+ Sbjct: 53 RRQRLSRAQLCELTRQLATLIGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++R + + + + G L++ L L+ L + + K + + Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168 Query: 127 KASAWIIGSLPFCVSTLV------YFTSPGYMNVLINDPR----------GHMLLGVAAA 170 + ++ + T V F G LI G ++G+A Sbjct: 169 TVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVLAGPWMVGLALM 228 Query: 171 FMLIGIMVMRL 181 ++G ++R Sbjct: 229 LAVLGGWLLRK 239 >gi|28870480|ref|NP_793099.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato str. DC3000] gi|213970082|ref|ZP_03398214.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato T1] gi|301381439|ref|ZP_07229857.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato Max13] gi|302132993|ref|ZP_07258983.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853727|gb|AAO56794.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato str. DC3000] gi|213925186|gb|EEB58749.1| general secretion pathway protein F [Pseudomonas syringae pv. tomato T1] gi|331017221|gb|EGH97277.1| general secretion pathway protein F [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 400 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|16759139|ref|NP_454756.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140689|ref|NP_804031.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213420543|ref|ZP_03353609.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427393|ref|ZP_03360143.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612707|ref|ZP_03370533.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648263|ref|ZP_03378316.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823718|ref|ZP_06543330.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25297478|pir||AE0520 protein transport protein HofC STY0164 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501429|emb|CAD01301.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136313|gb|AAO67880.1| transport protein HofC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 400 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|300361338|ref|ZP_07057515.1| competence protein [Lactobacillus gasseri JV-V03] gi|300353957|gb|EFJ69828.1| competence protein [Lactobacillus gasseri JV-V03] Length = 326 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 66/168 (39%), Gaps = 20/168 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 +D + +++ G ++ ++ ++ S S+ + + G L + + + Sbjct: 14 FIDYLKQALINGYSLNASLKLLPKIWSGN-SSQLVYISKQVEEGRQLGDVLHEVG----- 67 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS+ +S Q + GNL L LS+++R + K++ A +IG Sbjct: 68 -----FSSTLSAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 119 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + + F + +++LG ++IG ++ +I Sbjct: 120 MVTLLICMQTFLKTEMSDNDWTS---NLMLGGLVLLVIIGAFLISKII 164 >gi|15806863|ref|NP_295586.1| pilin biogenesis protein [Deinococcus radiodurans R1] gi|6459643|gb|AAF11416.1|AE002026_4 pilin biogenesis protein [Deinococcus radiodurans R1] Length = 406 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 64/172 (37%), Gaps = 20/172 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE----TQHLGLSLSESISRMVRYMPL 78 + + AG+P+ ++A++ Q + F VI+ G LSE++ + + Sbjct: 75 LATLINAGVPLVQSLAILQRQLDN---KTFEAVIKKVRGEVESGQPLSEALQQHPKIFG- 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F ++ + G L L ++ + ++ K++ S + ++ +L Sbjct: 131 ---RLFINLVR-AGETSGTLDTVLERIADFQEKQLALQGKIK--SALTYPTVVLVFALGI 184 Query: 139 CVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVMRLMINF 185 L P + +L ML+ V+ G++++ ++ Sbjct: 185 TYFLLTTVV-PQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVI 235 >gi|147669803|ref|YP_001214621.1| type II secretion system protein [Dehalococcoides sp. BAV1] gi|146270751|gb|ABQ17743.1| type II secretion system protein [Dehalococcoides sp. BAV1] Length = 401 Score = 38.9 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 16/164 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G + ++ ++ Q+++ + R ++ G SLS ++S+ + P Sbjct: 71 LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG+L L NL+ ++ + KV++ + + Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALT---YPGVVAVVGILVLL 182 Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +V F P + M + P +L+G++ F G+ V+ Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-RILIGLSDFFESWGLYVI 225 >gi|326943572|gb|AEA19465.1| hypothetical protein CT43_P281123 [Bacillus thuringiensis serovar chinensis CT-43] Length = 288 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|218456567|gb|ACK77478.1| type IV pilin assembly protein [Vibrio vulnificus] Length = 408 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------VKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|317051457|ref|YP_004112573.1| general secretion pathway protein F [Desulfurispirillum indicum S5] gi|316946541|gb|ADU66017.1| general secretion pathway protein F [Desulfurispirillum indicum S5] Length = 406 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 9/151 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLPV +A+ + Q+ + VRS V G SL++S+++ R P ++ Sbjct: 76 MATLIQAGLPVEEALKAVAAQTEKNRVRSILLGVRAKVMEGYSLAKSLAQYPRAFP--DL 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ ++ + KVQ + A + + V+ Sbjct: 134 YRSTVA---AGEHAGHLDLVLERLADYTEGQQRSRQKVQLALL---YPAILTVTSILIVT 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 L+ + P + V ++ + L +A + Sbjct: 188 FLLGYVVPDVIKVFVDTGQELPGLTIALISL 218 >gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 474 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%) Query: 29 AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AGLP+ ++ ++ + +++ V + G +LSE++++ + S Sbjct: 89 AGLPILRSLRILELQSKPGALKNALMDVGDEIESGSTLSEAMAKSPKV-----FSRLYIN 143 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + GG L L LS L +++K KV+ + + S+ + + Sbjct: 144 MIKAGEAGGALEVILRRLSEFLERSESLKRKVKGAMIYPVVVVLVAISILVFIMLKIVPV 203 Query: 148 SPGYMNVL 155 + Sbjct: 204 FKKMFDEF 211 >gi|317484813|ref|ZP_07943709.1| bacterial type II secretion system F domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923943|gb|EFV45133.1| bacterial type II secretion system F domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 413 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 21/175 (12%) Query: 23 IVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLP+ +A+ ++ + ++ R+ + G L++ ++ Sbjct: 83 LATLLHAGLPLDEALASICAHDDASRMQGIVSRLRDRIMAGGDLADGLAEFPNVFSST-- 140 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-----AWIIGSL 136 F T++ + G L + + + + + KVQA +I L Sbjct: 141 --FVTMVR-AGEASGTLELVIERFAEHIEQQVALVRKVQATLAYPILMLFVGIGVVIFLL 197 Query: 137 PFCVSTLVYFTS--------PGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRL 181 F + + S P + + ++D G ++ + ++IG+ MR Sbjct: 198 TFVIPKVTQIFSDMGRALPVPTQILLAVSDGIRSGWWIILLLVLCIMIGVWRMRR 252 >gi|189424344|ref|YP_001951521.1| general secretion pathway protein F [Geobacter lovleyi SZ] gi|189420603|gb|ACD95001.1| general secretion pathway protein F [Geobacter lovleyi SZ] Length = 403 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + A +P+ +A+ + + + +RS R+ G L+ ++S + + Sbjct: 73 LSTLTAAAVPIHEALEALHRQEKTGELRSILSRLRSRLAEGSPLARAMSSEPKVFGESYI 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + GG L + L L+ L ++ M+ V A + + + Sbjct: 133 AMVA-----AGEAGGALDKVLQRLADFLERQEEMRRSVSTALAYPGLMAVVGSGV---ML 184 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L+ F P + + L VA Sbjct: 185 FLLTFVVPKITGIFADTKATLPFLTVALL 213 >gi|320155371|ref|YP_004187750.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O] gi|319930683|gb|ADV85547.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O] Length = 408 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|217316906|gb|ACK37864.1| PilC [Vibrio vulnificus] Length = 408 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------VKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4] gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 299 Score = 38.9 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 55/139 (39%), Gaps = 7/139 (5%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66 +F + +D++ R G+ + ++ + F R+ E G + Sbjct: 156 EFAQALSSYIDLVALCRRGGIGSTQSLEIAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R+ + + L E+ + ++++ G ++ +L + LR + + A+ Sbjct: 213 SALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATE 272 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + G ++ L+ Sbjct: 273 KLAMPLAGLAGLFMALLLI 291 >gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 303 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +K +F D++ G A+ + + V FRR+ E Sbjct: 149 VRDDARKARVEFGRALGAYTDLVALERLGGSGTRQAMELAAEVGDNWV---FRRLSEELA 205 Query: 61 ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 GL+ +++ + + L E+ + ++ + + G + L S LR Sbjct: 206 RSRWSGLAPWDAMHVLADELGLPELDDLADIMRLSKE-GSQVYAQLRARSEGLRSAMLNA 264 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A ++ + + + I + LV +P + ++ Sbjct: 265 ALGKSNAAGERMT---IPMALLSIMFLVILITPSLLRLM 300 >gi|167550661|ref|ZP_02344418.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324362|gb|EDZ12201.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|90020993|ref|YP_526820.1| glyceraldehyde-3-phosphate dehydrogenase, type I [Saccharophagus degradans 2-40] gi|89950593|gb|ABD80608.1| type II secretion system protein [Saccharophagus degradans 2-40] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 8/169 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 D N + + + ++G+ + + + + + + ++E+ G + SES+ Sbjct: 59 RRDLINMVFQLEQLTKSGVSLLEGLKDLRDSVPESYFKDVLAGLVESIEGGKTFSESLKN 118 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASA 130 F +++ V + G L++ L ++ LR + + A V+ + A + Sbjct: 119 FPNDFDT----VFVSLVEVGEESG-ELAKILKDMGETLRWTDEIVAATVKIIMYPAIVAL 173 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + F + LV P ++ + D H + +A + I + Sbjct: 174 VVFCVTAFLMIYLVPKIIP-FVEEMGGDIPFHTVALIAFSDFFIHYWWL 221 >gi|170681709|ref|YP_001742226.1| type IV pilin biogenesis protein [Escherichia coli SMS-3-5] gi|170519427|gb|ACB17605.1| type IV pilus assembly protein PilC [Escherichia coli SMS-3-5] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAYDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGY--MNVLINDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKIFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|71064644|ref|YP_263371.1| pilin secretion/fimbrial assembly system protein, PilC [Psychrobacter arcticus 273-4] gi|71037629|gb|AAZ17937.1| pilin secretion/fimbrial assembly system protein, PilC [Psychrobacter arcticus 273-4] Length = 407 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P++ + ++ +P ++ ++ G + + ++ R RY Sbjct: 76 LATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHPRYFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F +++ + G L L ++ + +KAK++ Sbjct: 132 DLFCSLVD-SGEQSGALETMLERVATYKEKSELLKAKIKK 170 >gi|16763532|ref|NP_459147.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990016|ref|ZP_02571116.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168243442|ref|ZP_02668374.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450042|ref|YP_002044112.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|16418642|gb|AAL19106.1| putative component in type IV pilin biogenesis [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408346|gb|ACF68565.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205331469|gb|EDZ18233.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205337541|gb|EDZ24305.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261245375|emb|CBG23164.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991821|gb|ACY86706.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156770|emb|CBW16245.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911112|dbj|BAJ35086.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222282|gb|EFX47354.1| Type IV fimbrial assembly protein PilC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128462|gb|ADX15892.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987095|gb|AEF06078.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|194444325|ref|YP_002039374.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402988|gb|ACF63210.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ V +++F P + + N P + G+ A G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221 >gi|167628390|ref|YP_001678889.1| type ii secretion system f domain protein [Heliobacterium modesticaldum Ice1] gi|167591130|gb|ABZ82878.1| type ii secretion system f domain protein [Heliobacterium modesticaldum Ice1] Length = 408 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 22/186 (11%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + V AG+P+ +++++ + P +R + L LS E++ + Sbjct: 69 RQLSGFCRQLAALVDAGIPMCTSLSMVARRLRPPA---LQRAAQQVALALSQGETLISAL 125 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 F ++ + GG L ++L L+ + K++A + A ++ Sbjct: 126 EQQRHVFPELFVRLVET-GEAGGVLDQSLHRLADHYDKESAITRKIRAALL---YPALVL 181 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVA----------AAFMLIGIMV 178 + + P Y +L + G +L +A +G Sbjct: 182 ATAGGSTVFFFLYVIPAYSALLTSLGMGLPEITRFVLALAKWIGDYGLWMMLSAALGFFG 241 Query: 179 MRLMIN 184 +R ++ Sbjct: 242 LRRLMQ 247 >gi|198245628|ref|YP_002214095.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855657|ref|YP_002242308.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197940144|gb|ACH77477.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206707460|emb|CAR31734.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326621838|gb|EGE28183.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|157147471|ref|YP_001454790.1| type IV pilin biogenesis protein [Citrobacter koseri ATCC BAA-895] gi|157084676|gb|ABV14354.1| hypothetical protein CKO_03270 [Citrobacter koseri ATCC BAA-895] Length = 400 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 28/188 (14%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72 + + + ++AGL +S+ + ++ GQ ++ + + G LS ++++ Sbjct: 58 EQSAEIVHQLATLLKAGLTLSEGLTLLAGQHPSRQWQALLQTLAHNLEQGAPLSSALAQW 117 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + +L G L E L+R +K + KV+ + I Sbjct: 118 PQVFPP-----LYQAMIRTGELTGKLDECCFELARQQNAQKQLADKVKKAL---RYPIII 169 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFML 173 + V +++F P + + + G ++ + A + Sbjct: 170 LTMAVMVVFAMLHFVLPEFAAIYRTFNTPLPALTQGIITLAQWSAQWGWLMALLGIATGV 229 Query: 174 IGIMVMRL 181 I ++++ Sbjct: 230 IYGLIIKK 237 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 I+ + RAG+P S + I + P +V H G + +++ + P Sbjct: 269 ILALTQRAGIPFSQGLESIAETLNCPYWSQRLAQVHRDIHAGKPVWQALKNAGEFSP--- 325 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSR 107 + + + G L L NL+R Sbjct: 326 ---LCIQLVMTGETSGALDAMLHNLAR 349 >gi|149927150|ref|ZP_01915407.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824089|gb|EDM83310.1| type II secretion system protein [Limnobacter sp. MED105] Length = 412 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 9/141 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVR 74 + + +++G+P+ ++ +I G + + + V+ GL LSE++ + R Sbjct: 75 FVRQLAVMIQSGVPLGQSLGLIAGGMTSKSKRAIQTVVRAIRADVESGLKLSEAMRKHPR 134 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + F ++ + G L AL L+ + ++ KV+ + + Sbjct: 135 CFD----NLFCNTLA-AGENAGELDSALGRLATHIEKTLRIRQKVRKAMIYPSIVVLVAI 189 Query: 135 SLPFCVSTLVYFTSPGYMNVL 155 + + V + + Sbjct: 190 GVTVGMLLFVLPSFKSIYSQF 210 >gi|315926213|ref|ZP_07922412.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620473|gb|EFV00455.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 362 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 D + VR+G+ + A+ ++ D +R+ R G+SL+ES+ + Sbjct: 228 FADSLAMMVRSGVALIPALQIVCQNLQNDFLRARLSRTAALIESGMSLTESL----ERID 283 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + FF + + G+L++ L+ + + K + SA + ++ Sbjct: 284 VLDAEFFQ--LIQVGESAGSLAQVLSKAAAYYHKTYQKRFK--------RLSAVLEPAVL 333 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 V LV +M++L G+ L Sbjct: 334 VIVGVLVAVVVLSFMSILYAIYTGYASLL 362 >gi|261856174|ref|YP_003263457.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261836643|gb|ACX96410.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 412 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A+ ++ + P++ V GL+L++++ + +Y Sbjct: 82 LATMMQAGLPIVQALDIMAQSAEKVPMKELISTVKNDVESGLTLADAMDKHRKYFD---- 137 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G+L L ++ +++K K++ ++ S Sbjct: 138 ELFVNLVR-AGEDSGSLELVLDRIAVYKEKSESLKGKIKKALF---YPIAVVVVAFIVTS 193 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ F P + + +G A +IGI Sbjct: 194 ILLIFVIPQFQELF----QGFGATLPAFTLFVIGI 224 >gi|110803628|ref|YP_699547.1| type II secretion system protein F [Clostridium perfringens SM101] gi|110684129|gb|ABG87499.1| bacterial type II secretion system protein F [Clostridium perfringens SM101] Length = 401 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLASSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L +S ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMSEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|20090162|ref|NP_616237.1| hypothetical protein MA1298 [Methanosarcina acetivorans C2A] gi|19915147|gb|AAM04717.1| predicted protein [Methanosarcina acetivorans C2A] Length = 645 Score = 38.9 bits (90), Expect = 0.32, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 19/156 (12%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ-HLG 62 I+ R + +F ++L ++ R + G +A A + F + + Sbjct: 391 IRDRIKQMELEFADSLFVLGRRISEGKAPEEAFAHTSRTMEGSKIGEAFEEISMNLFSMR 450 Query: 63 LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109 +L ++I + + F+ + + G L++ L LS + Sbjct: 451 TNLRDAIFDEEFGAFRHIYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELSAV- 508 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++ + ++ +++A I L ++ + Sbjct: 509 --EERIRRSLYDVTSTMRSTAAIFAPLIAGITLALS 542 >gi|217316901|gb|ACK37860.1| PilC [Vibrio vulnificus] Length = 408 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|217316896|gb|ACK37856.1| PilC [Vibrio vulnificus] Length = 408 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|312876911|ref|ZP_07736887.1| Type II secretion system F domain [Caldicellulosiruptor lactoaceticus 6A] gi|311796322|gb|EFR12675.1| Type II secretion system F domain [Caldicellulosiruptor lactoaceticus 6A] Length = 403 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R + + + + AG+P+ A++VIV Q + + ++ G LS Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P ++ +L G+L + L ++ +K K+ + Sbjct: 117 RALAEKGECFPE-----ILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + V T G + L Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDEL 200 >gi|312793028|ref|YP_004025951.1| type II secretion system f domain [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180168|gb|ADQ40338.1| Type II secretion system F domain [Caldicellulosiruptor kristjanssonii 177R1B] Length = 403 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66 R + + + + AG+P+ A++VIV Q + + ++ G LS Sbjct: 57 RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ P ++ +L G+L + L ++ +K K+ + Sbjct: 117 RALAEKGECFPE-----ILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + V T G + L Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDEL 200 >gi|238911200|ref|ZP_04655037.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 400 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ V +++F P + + N P + G+ A G L++ Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221 >gi|84622429|ref|YP_449801.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366369|dbj|BAE67527.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 405 Score = 38.9 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRDK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|168230423|ref|ZP_02655481.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468768|ref|ZP_03074752.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455132|gb|EDX43971.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334971|gb|EDZ21735.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 400 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|21392773|ref|NP_652852.1| hypothetical protein BXA0087 [Bacillus anthracis str. A2012] gi|20520160|gb|AAM26042.1| conserved hypothetical protein [Bacillus anthracis str. A2012] Length = 229 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 122 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 180 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 + + + EV+ F+ + + G Sbjct: 181 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 217 >gi|330889707|gb|EGH22368.1| general secretion pathway protein GspF [Pseudomonas syringae pv. mori str. 301020] Length = 400 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|301058142|ref|ZP_07199194.1| general secretion pathway protein F [delta proteobacterium NaphS2] gi|300447774|gb|EFK11487.1| general secretion pathway protein F [delta proteobacterium NaphS2] Length = 409 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLPV A+++++ + D + +++T G LS+++++ R Sbjct: 79 LATLLEAGLPVDRALSLLIESAENDRFKKVIGDILKTVQGGGYLSDALAKHPR-----AF 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S F + + GG L L+ L L + +K ++ +++ + Sbjct: 134 SSFYVSMVRAGEAGGVLEAVLSRLGEFLESAQELKDYIK---SAMVYPIFLVCVGGLSII 190 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + + Sbjct: 191 VLLTFVIPKFSIIF 204 >gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 268 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 7/152 (4%) Query: 7 KRTAKFLDDFPNAL----DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ +F DD L ++ G+ D + +++ + +R R + Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119 +L+++++ M + L E+ ++V + G +L L ++ R + N++ + Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + M +LP + + Sbjct: 228 ERKRMSVLFEVIAFIALPSIFLVGILILMRAW 259 >gi|168820862|ref|ZP_02832862.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342429|gb|EDZ29193.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084388|emb|CBY94181.1| General secretion pathway protein F Cholera toxin secretion protein epsF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 400 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 + P + T+I G L+ LA+ L ++ + ++ +A + A Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|73671137|ref|YP_307152.1| hypothetical protein Mbar_A3709 [Methanosarcina barkeri str. Fusaro] gi|72398299|gb|AAZ72572.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 646 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 19/156 (12%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVI-ETQHLG 62 I+ R K +F ++L ++ R + G +A A + F+ + + Sbjct: 392 IRDRIKKMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAFQEISMNLLSMR 451 Query: 63 LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109 +L +I + + F+ + + G L++ L L + Sbjct: 452 TNLKAAIFDEDFGAFRHVYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELGTV- 509 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++ + ++ +++A I L ++ + Sbjct: 510 --EERIRRSLYDVTSTMRSTAVIFAPLIAGITLALS 543 >gi|228950020|ref|ZP_04112208.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809667|gb|EEM56100.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 288 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27] gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27] gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27] Length = 441 Score = 38.9 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 10/136 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + A+A++ Q+ + R ++V G++ SE++S+ Sbjct: 109 LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 162 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L L L+ L ++ K+++ + + + Sbjct: 163 SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFAVGVAYFLL 222 Query: 142 TLVYFTSPGYMNVLIN 157 T + P + +L + Sbjct: 223 TGIV---PQFAQILTD 235 >gi|297570328|ref|YP_003691672.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296926243|gb|ADH87053.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 404 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+ ++ ++ ++ QS P ++ R++ G +L + R + Sbjct: 75 LRTLLKAGVAITRSLEILQDQSEHPQIKRSLERMVTDIEEGATLEAAFRRHPKIFS---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++I + G+L E L LS IL +K + K Sbjct: 131 KLYCSMIR-AGEASGSLPEVLDRLSYILEHENKVKNDINTALAYPKI 176 >gi|288937074|ref|YP_003441133.1| general secretion pathway protein F [Klebsiella variicola At-22] gi|288891783|gb|ADC60101.1| general secretion pathway protein F [Klebsiella variicola At-22] Length = 404 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80 + V AG+P+ A+ + Q P+R+ V G SL+E++ Sbjct: 73 LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 126 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ ++A++ ++A ++ + V Sbjct: 127 FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARL----LQAMIYPIVLTLVAISV 182 Query: 141 STLVYFT 147 ++ T Sbjct: 183 IAILLST 189 >gi|110834174|ref|YP_693033.1| general secretion pathway protein F [Alcanivorax borkumensis SK2] gi|110647285|emb|CAL16761.1| General secretion pathway protein F [Alcanivorax borkumensis SK2] Length = 405 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GLPV A++ + Q++ D + V G SL+ S R P E+ Sbjct: 74 LATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLAHSFESFPRAFP--EM 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L + L L+ L R + V A+I+ + Sbjct: 132 YRATVA---AGEQSGHLEQVLEQLADYLETRHDTGRSVAQ---AMIYPAFIMVFASIVIM 185 Query: 142 TLVYFTSPGYMNVL 155 ++ F P + V Sbjct: 186 LMMTFVVPKLVAVF 199 >gi|251790889|ref|YP_003005610.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247539510|gb|ACT08131.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 401 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ +A+ + GQ+ P V V E G+S ++++ + Sbjct: 72 LASLLDAGIPLEEALTTLAGQADKPAVGVVLNAVREQLIAGVSFAQALQTLP-----HSF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + + G L+ L L+ L R+ K Sbjct: 127 NRLYCAMVAAGEATGGLALVLIRLADYLDQRQKTKN 162 >gi|147677471|ref|YP_001211686.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] gi|146273568|dbj|BAF59317.1| type II secretory pathway, component PulF [Pelotomaculum thermopropionicum SI] Length = 404 Score = 38.9 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 11/156 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A+ ++ Q+ +R + G + SE++ P Sbjct: 77 LATMLQAGVPLLQALHILTRQTGHKGLRDSLSVITRLLEEGRTFSEALRMFPAIYP---- 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ ++ G L AL NL+ N+ K++ A ++ + VS Sbjct: 133 -GIMVSMAEAGEVTGRLDYALENLAGHFEREHNISEKIK---SAMVYPAVLVATGIAAVS 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + P + +L D G L V A M + Sbjct: 189 IVFILVVPSFKAML--DTLGVELPAVTRAVMSVSAF 222 >gi|322615964|gb|EFY12881.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620748|gb|EFY17608.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623900|gb|EFY20737.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627348|gb|EFY24139.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630655|gb|EFY27419.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638125|gb|EFY34826.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640611|gb|EFY37262.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645604|gb|EFY42131.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648101|gb|EFY44568.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656866|gb|EFY53152.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657423|gb|EFY53695.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663742|gb|EFY59942.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666575|gb|EFY62753.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672266|gb|EFY68378.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676422|gb|EFY72493.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679485|gb|EFY75530.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686186|gb|EFY82170.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195030|gb|EFZ80216.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200061|gb|EFZ85148.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201118|gb|EFZ86187.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209515|gb|EFZ94448.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212233|gb|EFZ97057.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216538|gb|EGA01264.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219887|gb|EGA04365.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225833|gb|EGA10053.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228625|gb|EGA12754.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236761|gb|EGA20837.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239738|gb|EGA23785.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242214|gb|EGA26243.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249362|gb|EGA33278.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252305|gb|EGA36156.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256605|gb|EGA40335.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262974|gb|EGA46524.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265459|gb|EGA48955.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271753|gb|EGA55171.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 400 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 + P + T+I G L+ LA+ L ++ + ++ +A + A Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|296141574|ref|YP_003648817.1| type II secretion system F domain protein [Tsukamurella paurometabola DSM 20162] gi|296029708|gb|ADG80478.1| Type II secretion system F domain protein [Tsukamurella paurometabola DSM 20162] Length = 197 Score = 38.9 bits (90), Expect = 0.36, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 11/128 (8%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 A D+ +RAG+P +DA + ++ + + R E LG + Sbjct: 57 AYDLFAVCLRAGMPTADAARAVASTAAPALAAVLGRAAEMLALGSDPDTAW-----RTES 111 Query: 79 QEVSFFSTV--ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + + ++ G + + LA+L+R + +A+ +A++ +A + G L Sbjct: 112 DDAQVIALTRMLRRSARAGSSPAVGLADLART----ERAQAEDRAVAAGERAGVMVAGPL 167 Query: 137 PFCVSTLV 144 C Sbjct: 168 GLCFLPAF 175 >gi|330972856|gb|EGH72922.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 400 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|301068122|ref|YP_003786893.1| hypothetical protein BACI_pCIXO100800 [Bacillus anthracis CI] gi|300379212|gb|ADK08115.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 288 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|306819826|ref|ZP_07453480.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552073|gb|EFM40010.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 341 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 12/152 (7%) Query: 28 RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 ++GLP+ +A++V + S P ++ + E+ G + E++ + + + + Sbjct: 23 KSGLPLDEAMSVFTDEMSTPTLKKIALSIKESVDNGEPIYEAVKKHDEFP-----KYMTG 77 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++ + G NL E L+ LS ++ + + KV S + G + ++ LV Sbjct: 78 MMEIAYNTG-NLEEELSRLSTYYQEVERLNQKV---SNAVVYPVILTGLMLIIITFLVVK 133 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P + ++ D G + A + IG+ + Sbjct: 134 VIPMFSEII--DSIGADIPNTTAVLISIGLAL 163 >gi|205351483|ref|YP_002225284.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271264|emb|CAR36052.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626510|gb|EGE32853.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 400 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAILHFVLPEFAAIYRSFNTPL 199 >gi|1174586|sp|P45793|TAPC_AERHY RecName: Full=Type IV pilus assembly protein tapC gi|663117|gb|AAC43997.1| TapC [Aeromonas hydrophila] gi|1588984|prf||2209417C leader peptidase IV Length = 413 Score = 38.9 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ ++ +I +R ++ G +SE++ R R+ Sbjct: 82 ITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRH-----F 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ A +I S Sbjct: 137 DALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPAMVILVAIVVTS 193 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 194 ILLLFVIPQFEDIF 207 >gi|312138012|ref|YP_004005348.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311887351|emb|CBH46662.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 199 Score = 38.5 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D++ ++AGLPV DAVA + + DP+ RR + LG + + + Sbjct: 61 DLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASE---PA 117 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + ++ G LS A+A+L+ + +A+ +A++ KA I G L C Sbjct: 118 TEALARMARRSARSGAALSSAMADLATQ----QRTEAEDRAIAAVEKAGVLIGGPLGLCF 173 Query: 141 STLV 144 Sbjct: 174 LPAF 177 >gi|125973620|ref|YP_001037530.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|281417825|ref|ZP_06248845.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125713845|gb|ABN52337.1| type II secretion system protein [Clostridium thermocellum ATCC 27405] gi|281409227|gb|EFB39485.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] Length = 404 Score = 38.5 bits (89), Expect = 0.37, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+++A+ V+ Q+++ +R V + G++LS ++ + R P Sbjct: 77 LEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQHPRIFP----EMLI 132 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144 ++ ++ G L ++ + K++ AL+ + I + + +V Sbjct: 133 NMVE-AGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPIIVTVVAIAVIMILMVAVV 191 Query: 145 YFTSPGYMNVL 155 P ++ VL Sbjct: 192 ----PTFVKVL 198 >gi|325913939|ref|ZP_08176297.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC 35937] gi|325539851|gb|EGD11489.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC 35937] Length = 405 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R + +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKSRRVIGDIRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + +K K Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 V + A ++ + + L+ + P + Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196 >gi|325266599|ref|ZP_08133276.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC 33394] gi|324982042|gb|EGC17677.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC 33394] Length = 427 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 7/123 (5%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58 + + R K + ++AGLP+ A ++ S+ V + Sbjct: 71 LNKMKSAREKKITQQDITVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAVTRLLTEIRND 130 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SL S S+ +Y F + + GG L L L+ + +K K Sbjct: 131 VEQGESLGTSFSKHPKY-----FDKFYCNLVAAGEAGGVLEGLLDKLALYKEKTQAIKKK 185 Query: 119 VQA 121 V++ Sbjct: 186 VKS 188 >gi|10956308|ref|NP_052757.1| hypothetical protein pxo1_61 [Bacillus anthracis] gi|227811507|ref|YP_002811518.1| hypothetical protein BAMEG_A0082 [Bacillus anthracis str. CDC 684] gi|4894277|gb|AAD32365.1| pXO1-61 [Bacillus anthracis] gi|227007935|gb|ACP17677.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] Length = 236 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 + + + EV+ F+ + + G Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 224 >gi|227893242|ref|ZP_04011047.1| competence protein [Lactobacillus ultunensis DSM 16047] gi|227864925|gb|EEJ72346.1| competence protein [Lactobacillus ultunensis DSM 16047] Length = 333 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 26/179 (14%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69 + LD + S+ G + +++ + P R E +++ + G S S + Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKREELMQKLADQMKEGASFSTEL 69 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ FS Q GNL+E L L+ + R ++ K++ E Sbjct: 70 VKL----------VFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + + F S + + ++ G +++ ++ GI ++N Sbjct: 117 SYPLVLAIMMVILLVFMQSFVSTQFSS--TSEHSGDIVMLGLIVLVMTGIYFFVRIVNL 173 >gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1] gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1] Length = 332 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 53/142 (37%), Gaps = 2/142 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65 R + P + R G+PVS + + + +R E + L G + Sbjct: 134 RKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVASLKIFKALREEAEMIRTKIRLLGKNP 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ V P F + ++G ++ L ++ L +R+ ++ A M Sbjct: 194 LDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVIHYLEIRTQDLFERRLNDIRLLAERMT 253 Query: 126 AKASAWIIGSLPFCVSTLVYFT 147 +++ ++ + ++FT Sbjct: 254 LYLEIYLVVAVIATIVFYIFFT 275 >gi|325675225|ref|ZP_08154910.1| bacterial type II secretion system protein F domain protein [Rhodococcus equi ATCC 33707] gi|325553931|gb|EGD23608.1| bacterial type II secretion system protein F domain protein [Rhodococcus equi ATCC 33707] Length = 198 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D++ ++AGLPV DAVA + + DP+ RR + LG + + + Sbjct: 60 DLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASE---PA 116 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + ++ G LS A+A+L+ + +A+ +A++ KA I G L C Sbjct: 117 TEALARMARRSARSGAALSSAMADLATQ----QRTEAEDRAIAAVEKAGVLIGGPLGLCF 172 Query: 141 STLV 144 Sbjct: 173 LPAF 176 >gi|71736449|ref|YP_275239.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557002|gb|AAZ36213.1| general secretion pathway protein GspF [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323741|gb|EFW79825.1| general secretion pathway protein F [Pseudomonas syringae pv. glycinea str. B076] gi|320327883|gb|EFW83888.1| general secretion pathway protein F [Pseudomonas syringae pv. glycinea str. race 4] Length = 400 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|17548688|ref|NP_522028.1| putative general secretion pathway GSPF-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430936|emb|CAD17618.1| putative general secretion pathway gspf-related transmembrane protein [Ralstonia solanacearum GMI1000] Length = 397 Score = 38.5 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R K + +RAGL VS+A+ + + P +R++ + Sbjct: 49 LARSLQSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 GL LSES+ ++ P I + G + +AL ++ + ++ ++ KV Sbjct: 107 SGLPLSESMKQVEGGFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV- 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A A +IG V L+ + P + ++ D + G + +G + Sbjct: 161 --VSAAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 214 >gi|326392591|ref|ZP_08213935.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] gi|325991368|gb|EGD50016.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus JW 200] Length = 144 Score = 38.5 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 P +D+ A +P+ D + + VR+ ++ + ++ R + Sbjct: 1 MPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEYIMTKEKEVALKRFIN 60 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L E + + + + G L E L+ LS L + K Q SME K A + Sbjct: 61 EVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAAVFF 119 Query: 135 SLPFCVSTLVY 145 + V+ +Y Sbjct: 120 LMASIVTLYIY 130 >gi|298487498|ref|ZP_07005542.1| General secretion pathway protein F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158013|gb|EFH99089.1| General secretion pathway protein F [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330987893|gb|EGH85996.1| general secretion pathway protein GspF [Pseudomonas syringae pv. lachrymans str. M301315] Length = 400 Score = 38.5 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|256003440|ref|ZP_05428431.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|255992730|gb|EEU02821.1| type II secretion system protein [Clostridium thermocellum DSM 2360] gi|316940138|gb|ADU74172.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 404 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+++A+ V+ Q+++ +R V + G++LS ++ + R P Sbjct: 77 LEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQHPRIFP----EMLI 132 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144 ++ ++ G L ++ + K++ AL+ + I + + +V Sbjct: 133 NMVE-AGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPIIVTVVAIAVIMILMVAVV 191 Query: 145 YFTSPGYMNVL 155 P ++ VL Sbjct: 192 ----PTFVKVL 198 >gi|261820714|ref|YP_003258820.1| general secretion pathway protein F [Pectobacterium wasabiae WPP163] gi|261604727|gb|ACX87213.1| general secretion pathway protein F [Pectobacterium wasabiae WPP163] Length = 408 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + V G SL++++ Sbjct: 77 LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|118443786|ref|YP_877676.1| pilin biogenesis protein [Clostridium novyi NT] gi|118134242|gb|ABK61286.1| probable pilin biogenesis protein [Clostridium novyi NT] Length = 402 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F LD AG + ++V ++ Q+ +P ++ V E G +LS + Sbjct: 68 FCRQFATLLD-------AGADILNSVDLLRKQAENPKLKDSLEVVYEEIQKGYTLSSCMD 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + P ++ + G L + ++ + +K++ M Sbjct: 121 KFKDVYP----KLLVNMVRSGEETG-QLGSVMEKMAEQYEREHRINSKIKGAFM---YPI 172 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 +I V+ L+ P ++ + Sbjct: 173 ILIIVCVSAVTFLLTCVMPTFVQMF 197 >gi|186680664|ref|YP_001863860.1| type II secretion system protein [Nostoc punctiforme PCC 73102] gi|186463116|gb|ACC78917.1| type II secretion system protein [Nostoc punctiforme PCC 73102] Length = 407 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + AG+ + ++ V+ Q S+ ++ + G++LSES+ + Sbjct: 77 AVLMNAGVAIVRSLGVLSEQCSNTKLKQALIEISNDVQSGMNLSESMRKHPDC-----FD 131 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + ++GG L E L L+++L D ++ ++++ +I S+ ++ Sbjct: 132 GLYVSMIQAGEVGGVLDEVLNRLAKLLEDVARLQNQIKSALSYPTVVGFIAVSIFLGMTI 191 Query: 143 LVYFTSPGYM 152 + Sbjct: 192 FLIPVFAKIF 201 >gi|290512495|ref|ZP_06551861.1| general secretion pathway protein F [Klebsiella sp. 1_1_55] gi|289774836|gb|EFD82838.1| general secretion pathway protein F [Klebsiella sp. 1_1_55] Length = 337 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80 + V AG+P+ A+ + Q P+R+ V G SL+E++ Sbjct: 6 LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 59 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ ++A++Q +A ++ + V Sbjct: 60 FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQ----QAMIYPIVLTLVAISV 115 Query: 141 STLVYFT 147 ++ T Sbjct: 116 IAILLST 122 >gi|283455154|ref|YP_003359718.1| type II secretion system protein, pilus assembly [Bifidobacterium dentium Bd1] gi|283101788|gb|ADB08894.1| type II secretion system protein, pilus assembly [Bifidobacterium dentium Bd1] Length = 171 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 16/135 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ V+ V + G+ ++ Sbjct: 39 MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 91 Query: 76 MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132 P +++ V + G + L L +R ++ AK S + Sbjct: 92 WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERD------AAKLSIRL 145 Query: 133 IGSLPFCVSTLVYFT 147 + C Sbjct: 146 LLPTGLCFLPAFIAI 160 >gi|218698526|ref|YP_002406155.1| type IV pilin biogenesis protein [Escherichia coli IAI39] gi|218368512|emb|CAR16247.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli IAI39] Length = 400 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 30/184 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q SS ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHSSKQWQALLQSLAYDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P G +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232 Query: 177 MVMR 180 ++MR Sbjct: 233 LLMR 236 >gi|148555497|ref|YP_001263079.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148500687|gb|ABQ68941.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 406 Score = 38.5 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 11/175 (6%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61 L ++R I V + + + A+ ++ Q+ +RS V Sbjct: 57 RLFRRRVGA--RALATVTRQIATLVTSEVNIEQALKLVAEQAEGAALRSLLLDVRGAILD 114 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + ++ + F T + G L++ LA+L+ + +R+ + K+Q Sbjct: 115 GYSFAAAL-----RLHPATFPEFYTASVAAGEQAGRLAQVLAHLADFVENRQRNQQKIQL 169 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + A + + ++ L+ + P + V I+ L A + G+ Sbjct: 170 ALLYPALLAVVSFGM---MALLMVYVVPDIVRVFISRGAELPFLTRALIAISGGL 221 >gi|302184976|ref|ZP_07261649.1| general secretion pathway protein F [Pseudomonas syringae pv. syringae 642] Length = 400 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|269961262|ref|ZP_06175629.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3] gi|269834023|gb|EEZ88115.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3] Length = 407 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 76 IATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASTHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNLS+ L+ + ++AKV A I ++ V+ Sbjct: 131 DPLYTDLIATGEQSGNLSQVFERLATYREKSEQLRAKV--------IKALIYPAMVVLVA 182 Query: 142 TLVYFT 147 V + Sbjct: 183 LGVSYL 188 >gi|21228399|ref|NP_634321.1| hypothetical protein MM_2297 [Methanosarcina mazei Go1] gi|20906873|gb|AAM31993.1| conserved protein [Methanosarcina mazei Go1] Length = 645 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 19/156 (12%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVI-ETQHLG 62 I+ R + +F ++L ++ R + G +A A + + + + Sbjct: 391 IRDRIKQMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAYEGISMNLLSMR 450 Query: 63 LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109 +L +++ + + F+ + + G L++ L LS + Sbjct: 451 TNLKDAVFDEEFGAFRHVYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELSDV- 508 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++ + ++ + +A I L ++ + Sbjct: 509 --EERIRRSLYDVTSTMRTTAAIFAPLIAGITLALS 542 >gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor kronotskyensis 2002] gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor kronotskyensis 2002] Length = 403 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + D + AG+P+ A+ VI Q + + G Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS +++ P +I ++ G++ +AL ++ ++ K+ Sbjct: 114 MLSRALTEKAECFPS----ILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A +I + ++ F P ++ + Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197 >gi|66046379|ref|YP_236220.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|289679112|ref|ZP_06500002.1| general secretion pathway protein F [Pseudomonas syringae pv. syringae FF5] gi|63257086|gb|AAY38182.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 400 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|56421162|ref|YP_148480.1| hypothetical protein GK2627 [Geobacillus kaustophilus HTA426] gi|56381004|dbj|BAD76912.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 403 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 17/179 (9%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L F L VRAG+ + D++ ++ Q+ + + + G LS + ++ Sbjct: 62 LQHFVVFLRQFATLVRAGVTIVDSIHILAEQTESKALARALDDMEQHLREGNPLSAAAAK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA- 130 R P F ++ + G L E L L+ + K+ + A A Sbjct: 122 HPRIFP----PLFVNMVR-AGEASGTLDETLDRLADHFEKVHRTRQKIVSALAYPVAVAI 176 Query: 131 --------WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ +P V F + P ++ + IG+ ++ Sbjct: 177 IAVAVVIFLLVSVVPTFVDMFADFHAELPAITKFVLKASAFMQHYWWMITLLAIGVFLL 235 >gi|50122030|ref|YP_051197.1| general secretion pathway protein F [Pectobacterium atrosepticum SCRI1043] gi|49612556|emb|CAG76006.1| general secretion pathway protein F [Pectobacterium atrosepticum SCRI1043] Length = 408 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + V G SL++++ Sbjct: 77 LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|77458199|ref|YP_347704.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77382202|gb|ABA73715.1| putative general secretion pathway protein F [Pseudomonas fluorescens Pf0-1] Length = 395 Score = 38.5 bits (89), Expect = 0.41, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 66/179 (36%), Gaps = 12/179 (6%) Query: 2 KHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 +H R +K + + + AGLP+ DA+ + +++ R ++ Sbjct: 44 RHWRSLRLSKRETFNLVLFSQELTTLLNAGLPLIDALESLAEKETAPAARKTLSELVRLL 103 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G S S+++ ++ P + S+ G + +AL + ++ K+ Sbjct: 104 YEGKSFSQALGQLSAVFPP-----LYVALVQSSEKTGAVGDALGRYVSYRQRMDEVRQKI 158 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + S+ + G + + V P + V + G L ++ M G+ + Sbjct: 159 VSASIYPLLLLVVGGGVVLFLMGYVV---PRFSLVF--EGLGSNLPWLSQILMSSGMFL 212 >gi|196248903|ref|ZP_03147603.1| type II secretion system protein [Geobacillus sp. G11MC16] gi|196211779|gb|EDY06538.1| type II secretion system protein [Geobacillus sp. G11MC16] Length = 342 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + R + G P+ A+ + Q+ R E R ++ GL L +I + V Sbjct: 18 LGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP-------VD 70 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + ++ G+L +A L + +++ + ++ L + Sbjct: 71 RLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRF---GRYPLFLFALLIVMLLL 127 Query: 143 LVYFTSPGY 151 + + P + Sbjct: 128 MERWLLPQF 136 >gi|146329906|ref|YP_001210009.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus VCS1703A] gi|790210|gb|AAB65806.1| FimO [Dichelobacter nodosus] gi|146233376|gb|ABQ14354.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus VCS1703A] Length = 407 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +RAG+PV A+ ++ P ++ V E G + +E++S PL Sbjct: 76 MSTMLRAGMPVLRALDLVGQSIEKPKAMQEMVFDVHEKIQNGATFAEALSSH----PLH- 130 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + + G L + + +++ L + +K K++ + A ++ Sbjct: 131 FDSLYVSLVAAGEEAGMLDKTMDDIAVNLEKGEAVKKKIKKAL---QYPAIVMLFAIVVT 187 Query: 141 STLVYFTSPGYMNVLINDPRG------HMLLGVAAAFMLIGIMVMRLMI 183 + L+ P G M++ ++ F+ GI + L++ Sbjct: 188 AVLMIKVVP-VFAEFFESNGGTLPAPTQMVVKISHFFVNKGIYFLMLIV 235 >gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614] gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614] Length = 303 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 10/154 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60 KK +F +D++ VR G A+ + F+R+ Sbjct: 154 AKKARIEFSRALGAYIDMVATGVRDGSSGQQALRSAAEVGD---KWVFKRIESELRRARY 210 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + +S+ + + + E+ + ++ Q G + ++ NL ++ + Sbjct: 211 MTRAPWDSLHGLADELAVPELDDLADIM---QQSGQDGAQIYNNLRARAAALRSAMLSAE 267 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 A + I + + + +P + Sbjct: 268 VGKANATSERMYIPASLLGIVFMAILVTPSLLRF 301 >gi|313497009|gb|ADR58375.1| PilC [Pseudomonas putida BIRD-1] Length = 422 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58 L K+R F ++AG+P+ A V+ D + R+ + Sbjct: 76 LPKRREKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 128 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 GL L++++ R + + + ++ V Q G L L L+ +L R+ + K Sbjct: 129 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 183 Query: 119 VQA 121 V+ Sbjct: 184 VRK 186 >gi|307131915|ref|YP_003883931.1| general secretion pathway protein F [Dickeya dadantii 3937] gi|306529444|gb|ADM99374.1| General secretion pathway protein F [Dickeya dadantii 3937] Length = 408 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + + V G SL+E++ Sbjct: 77 LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|295109281|emb|CBL23234.1| Type II secretory pathway, component PulF [Ruminococcus obeum A2-162] Length = 404 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 64/157 (40%), Gaps = 9/157 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D V +AG+P+ +A+ ++ Q+ + ++ V+ G +L++S++ + Sbjct: 63 RDLSVFCRQFVSITQAGVPMKEALQMMTEQTENKWLKKATADVLVNVEKGNTLADSMASI 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P V+ + + G+L + ++ +KA ++ ++ + Sbjct: 123 PDIFPPMLVNMVA-----AGESSGSLEMSFNRMATHFEKEAKLKATIRKATI---YPIIL 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I ++ ++ ++ + P ++++ + L + Sbjct: 175 ICAVIGVIAVMLLYVIPIFIDMFADLDVEMPALTMGV 211 >gi|253988608|ref|YP_003039964.1| type IV pilin biogenesis protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780058|emb|CAQ83219.1| protein transport protein hofc [Photorhabdus asymbiotica] Length = 399 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYM 76 N + + + +G+P+ + + +++ + S+P+ + + G S S S+ Sbjct: 63 NFIRQLATLLSSGMPLLNCLNILIRECSNPLWHCVLSDISKRITRGESFSTSLKNYPFLF 122 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGS 135 P V G L+ L ++L ++ + K+Q +A + II Sbjct: 123 P-PLFYQLIAV--------GELTGQLEICCQLLIKQQEQQDKLQKKIAKALRYPLIIIVV 173 Query: 136 LPFCVSTLVYFTSPGY 151 + ++ F P + Sbjct: 174 ANIIILLMLIFVLPEF 189 >gi|227114131|ref|ZP_03827787.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 408 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + V G SL++++ Sbjct: 77 LATLVAASLPLEEALDAVAKQSEKPQLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|204927253|ref|ZP_03218455.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323918|gb|EDZ09113.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 400 Score = 38.5 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130 + P + T+I G L+ LA+ L ++ + ++ +A + A Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein [Rhodococcus erythropolis SK121] Length = 299 Score = 38.5 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 55/139 (39%), Gaps = 7/139 (5%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66 +F + +D++ R G+ + ++ + F R+ E G + Sbjct: 156 EFAQALSSYIDLVALCRRGGVGSTQSLEIAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R+ + + L E+ + ++++ G ++ +L + LR + + A+ Sbjct: 213 SALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATE 272 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + G ++ L+ Sbjct: 273 KLAMPLAGLAGLFMALLLI 291 >gi|229073961|ref|ZP_04207037.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185] gi|228709146|gb|EEL61244.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185] Length = 288 Score = 38.5 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|228938212|ref|ZP_04100827.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971090|ref|ZP_04131723.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788613|gb|EEM36559.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821445|gb|EEM67455.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 288 Score = 38.5 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|160931311|ref|ZP_02078711.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753] gi|156869695|gb|EDO63067.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753] Length = 297 Score = 38.5 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDAPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q + G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|325569593|ref|ZP_08145640.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC 12755] gi|325157149|gb|EGC69314.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC 12755] Length = 403 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 31/188 (16%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +G+ + DA ++ Q P + V + G LSE+ P+ Sbjct: 69 LRQFSTLIASGITIVDASRMLEEQQKKPNFKRILGEVRDDIDGGRPLSEAYKAHPNAFPV 128 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 ++VI+V G L + D A+ ++ + A I+ + F Sbjct: 129 ----LLTSVITVSEMSGS-----LEKNLTDMADYYEKSAENRSGLVTAMVYPIILILMTF 179 Query: 139 CVSTLVYFTSPGYMNVLIND--------------------PRGHMLLGVAAAFMLIGIMV 178 V ++ + RG +L V ++IG + Sbjct: 180 VVGIILLVMIVPMFVEVFESFDTDLPRITVITMAISDFLQTRGW-VLAVFIVGIMIGFWL 238 Query: 179 MRLMINFD 186 +R D Sbjct: 239 IRRNEKID 246 >gi|307327612|ref|ZP_07606797.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306886724|gb|EFN17725.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 305 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 62/187 (33%), Gaps = 12/187 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + R + + L+ + AG+ ++ + + P+ + + + E G+ Sbjct: 105 AQARIERL-EALGQWLNHLAGVHTAGISLTQTIRASAKAAPAPIAANVQALAERLRAGMD 163 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQL---GGNLSEALANLSRILRDRKNMKAKVQA 121 + + L + V+ QS G L++AL L+ + + V+A Sbjct: 164 AHAAFALFAD--ELADGVSDHVVLLFQSHAVYKGPGLADALEALAITIHQQAADARDVEA 221 Query: 122 LSMEAKASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + ++ + + ++ G+ P G ++L + + Sbjct: 222 DRAKVRKASRQVSVVICVVVIGCMLNQAWSGWYA----SPLGQIVLAALGGAFAWTLSWL 277 Query: 180 RLMINFD 186 R + Sbjct: 278 RRIARTK 284 >gi|253998298|ref|YP_003050361.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|313200371|ref|YP_004039029.1| type II secretion system protein [Methylovorus sp. MP688] gi|253984977|gb|ACT49834.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|312439687|gb|ADQ83793.1| type II secretion system protein [Methylovorus sp. MP688] Length = 403 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ ++P V + G SLS++ + PL Sbjct: 73 LATMMKAGVPLLQAFEIVGKGHNNPAVSKLLGDIKSDVETGSSLSQAFRK----YPLY-F 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ +K+K+++ + + + + Sbjct: 128 DALYCNLVGAGEQAGILDSLLDRLATYKEKILAIKSKIKSALFYPVSIIVVAFIITAVIM 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V + D L+ +A + + Sbjct: 188 IFVIPAFKELFSSFGADLPAPTLIVMAISDFFVEYWW 224 >gi|213855587|ref|ZP_03383827.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 289 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|171741512|ref|ZP_02917319.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC 27678] gi|171277126|gb|EDT44787.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC 27678] Length = 183 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 16/135 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ V+ V + G+ ++ Sbjct: 51 MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 103 Query: 76 MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132 P +++ V + G + L L +R ++ AK S + Sbjct: 104 WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERD------AAKLSIRL 157 Query: 133 IGSLPFCVSTLVYFT 147 + C Sbjct: 158 LLPTGLCFLPAFIAI 172 >gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis OB47] gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis OB47] Length = 403 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + D + AG+P+ A+ VI Q + + G Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS +++ P +I ++ G++ +AL ++ ++ K+ Sbjct: 114 MLSRALAEKAECFPT----ILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A +I + ++ F P ++ + Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197 >gi|289648896|ref|ZP_06480239.1| general secretion pathway protein F [Pseudomonas syringae pv. aesculi str. 2250] Length = 400 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196 >gi|227327881|ref|ZP_03831905.1| general secretion pathway protein F [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 408 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + V G SL++++ Sbjct: 77 LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----GSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|229020883|ref|ZP_04177582.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273] gi|229027757|ref|ZP_04183938.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272] gi|229035195|ref|ZP_04189131.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271] gi|228728087|gb|EEL79127.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271] gi|228733549|gb|EEL84352.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272] gi|228740415|gb|EEL90714.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273] Length = 288 Score = 38.5 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|315037963|ref|YP_004031531.1| Competence protein [Lactobacillus amylovorus GRL 1112] gi|312276096|gb|ADQ58736.1| Competence protein [Lactobacillus amylovorus GRL 1112] Length = 333 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 26/179 (14%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69 + LD + S+ G + +++ + P R E R++ G + S + Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKRKELMRKLAMRMKEGANFSSEL 69 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ FS Q GNL+E L L+ + R ++ K++ E Sbjct: 70 VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + + F S + + ++ G +++ V +L+GI + ++ Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173 >gi|168186720|ref|ZP_02621355.1| bacterial type II secretion system protein F [Clostridium botulinum C str. Eklund] gi|169295347|gb|EDS77480.1| bacterial type II secretion system protein F [Clostridium botulinum C str. Eklund] Length = 402 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG + ++V ++ Q+ +P ++ V E G +LS + + P + Sbjct: 78 AGADILNSVDLLKKQTENPKLKDSLEVVYEEIQKGYTLSSCMDKFKDVYP----KLLVNM 133 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + G L + ++ + +K++ M ++ V+ L+ Sbjct: 134 VRSGEETG-QLGSVMEKMAEQYEREHRINSKIKGAFM---YPIILVIVCVSAVTFLLTCV 189 Query: 148 SPGYMNVLIND 158 P ++ + + Sbjct: 190 MPTFVQMFQDS 200 >gi|329118206|ref|ZP_08246916.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] gi|327465627|gb|EGF11902.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC BAA-1200] Length = 407 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%) Query: 1 MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRR 54 +K KKR + F ++AGLP+ A ++ ++P + Sbjct: 56 VKATRKKRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHANPSMTQLLMS 108 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G S+ + ++ +Y F + + GG L L L+ ++ Sbjct: 109 VKSDVEQGQSMGSAFAKHPKY-----FDRFYCNLVAAGEAGGVLENLLDKLAVYKEKTQS 163 Query: 115 MKAKVQA 121 +K KV++ Sbjct: 164 IKKKVKS 170 >gi|213027687|ref|ZP_03342134.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 5 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 64 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + A Sbjct: 65 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 116 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 117 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 147 >gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253] gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253] Length = 576 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 4/180 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60 K L +R + D + + A + ++ ++ + E +R+++ Sbjct: 84 KLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSEEAEYKELALEMQRIVQLVD 143 Query: 61 L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 SL +++ + +P + +S F ++ GG + + L + ++ + Sbjct: 144 TWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFLLSEQDVVIQNYVTIYEG 203 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++E ++ L + + P G +++ A M G + M Sbjct: 204 SLRNLEVMKDLYLSMILSVTFALVFATVLPILTGTNPTMTVGAVVVMFAFVQM--GFLFM 261 >gi|291166356|gb|EFE28402.1| type II secretion system protein [Filifactor alocis ATCC 35896] Length = 368 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 11/148 (7%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62 LI+K F + L I + G+ + +++ +I + + ++ F +I G Sbjct: 224 LIRKIKRLFFQK--DFLWRISCMLDGGIAIKESLKIIEETEQNRYLKKVFSEMIFLIERG 281 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKAKVQA 121 S++++IS + ++S+ I + GG L E + L + RD + M +K+ Sbjct: 282 KSVADAISEYPELFSVNDISY----IRQGEESGG-LRENIHALCFLYKRDSEKMISKISD 336 Query: 122 LSMEAKA--SAWIIGSLPFCVSTLVYFT 147 ++G + F + L+ T Sbjct: 337 YGQPVMILCLGLLVGIVAFSIIPLMNVT 364 >gi|297568843|ref|YP_003690187.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924758|gb|ADH85568.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 402 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 13/145 (8%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F +D AGLP+ ++ ++ Q +P + + V G + ++S+ Sbjct: 68 FTRQLSTMID-------AGLPLVQSLQILGDQQENPTFKKVLKEVRTDVETGSTFADSLK 120 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + ++GG L + L+ + + ++ KV+ Sbjct: 121 KHPEI-----FDNLYCNMMEAGEVGGILDTICSRLAVFMEKSQALQKKVKGAMTYPIICL 175 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 I + + V Sbjct: 176 AISLIVMAVMLIFVVPVFEEMFADF 200 >gi|229073927|ref|ZP_04207005.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185] gi|228709167|gb|EEL61263.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185] Length = 288 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR+ + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|218848410|ref|YP_002454972.1| hypothetical protein BCAH820_B0088 [Bacillus cereus AH820] gi|218540461|gb|ACK92857.1| conserved hypothetical protein [Bacillus cereus AH820] Length = 300 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 141 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 199 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 200 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 257 >gi|110802764|ref|YP_699126.1| pilus biogenesis protein [Clostridium perfringens SM101] gi|110683265|gb|ABG86635.1| putative pilus biogenesis protein [Clostridium perfringens SM101] Length = 339 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+PV ++ +I E +R+ + G +LS++ P Sbjct: 19 VKSGMPVGRSLDLIKNTVKGKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + + Sbjct: 75 DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYIT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|94267866|ref|ZP_01291017.1| type II secretion system protein [delta proteobacterium MLMS-1] gi|93451826|gb|EAT02573.1| type II secretion system protein [delta proteobacterium MLMS-1] Length = 411 Score = 38.5 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 25/164 (15%) Query: 6 KKRTAKFLDDFPNALDIIVRSV------------RAGLPVSDAVAVIVGQSSDPVRSEFR 53 + R +F +P II RS+ RAG+P+ A+ ++ + + Sbjct: 254 RLRWDRFKLRWPIFGGIITRSLLARFARTFALSFRAGVPLPAAMGLLARSADN---RYLE 310 Query: 54 RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 + IE G+ ++++R + + + + G + E + ++ Sbjct: 311 QCIEGMRNGIERGDTLTRTAHNTGM--FTPLVLQMLAVGEETGAIDEMMDEVADFYEREV 368 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + + K SA I L + +V + G + N Sbjct: 369 DYELK--------NISAMIEPFLIVAIGIMVLILALGVFLPMWN 404 >gi|138896010|ref|YP_001126463.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2] gi|134267523|gb|ABO67718.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2] Length = 342 Score = 38.5 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + R + G P+ A+ + Q+ R E R ++ GL L +I + V Sbjct: 18 LGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP-------VD 70 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + ++ G+L +A L + +++ + ++ L + Sbjct: 71 RLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRF---GRYPLFLFALLIVMLLL 127 Query: 143 LVYFTSPGY 151 + + P + Sbjct: 128 MERWLLPQF 136 >gi|330954615|gb|EGH54875.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 400 Score = 38.5 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|306823785|ref|ZP_07457159.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|304552783|gb|EFM40696.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] Length = 171 Score = 38.5 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ V+ V + G+ ++ Sbjct: 39 MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 91 Query: 76 MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132 P +++ V + G + L L +R ++ LS I Sbjct: 92 WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLS--------I 143 Query: 133 IGSLPFCVSTLVYFTS 148 LP + L F + Sbjct: 144 RLLLPTGLCFLPAFIA 159 >gi|251788922|ref|YP_003003643.1| general secretion pathway protein F [Dickeya zeae Ech1591] gi|247537543|gb|ACT06164.1| general secretion pathway protein F [Dickeya zeae Ech1591] Length = 408 Score = 38.5 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + + V G SL+E++ Sbjct: 77 LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|256020058|ref|ZP_05433923.1| type IV pilin biogenesis protein [Shigella sp. D9] gi|332281207|ref|ZP_08393620.1| assembly protein in type IV pilin biogenesis transmembrane protein [Shigella sp. D9] gi|332103559|gb|EGJ06905.1| assembly protein in type IV pilin biogenesis transmembrane protein [Shigella sp. D9] Length = 400 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K ++ + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKALRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|225871557|ref|YP_002752915.1| hypothetical protein BCA_A0068 [Bacillus cereus 03BB102] gi|225785622|gb|ACO25840.1| conserved hypothetical protein [Bacillus cereus 03BB102] Length = 240 Score = 38.5 bits (89), Expect = 0.47, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 81 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 139 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 140 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 197 >gi|228918238|ref|ZP_04081739.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841415|gb|EEM86557.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 210 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 51 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 110 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 167 >gi|171057240|ref|YP_001789589.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170774685|gb|ACB32824.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 408 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 4/147 (2%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + ++AG+P+ A ++ SS+P R++ + S+S R PLQ Sbjct: 78 LATMLKAGVPLLQAFDIVARGSSNP---RLTRMLTDIRGDVETGTSLSAAFRRHPLQ-FD 133 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L L L+ ++ K+++ + A + + + Sbjct: 134 ALYCNLVEAGESAGILETLLDRLANYQEKTIELQNKIRSALIYPVAVLVVAFIVVAVIMI 193 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAA 169 V + D L+ +A Sbjct: 194 FVIPSFKDIFKSFGADLPLPTLIVIAM 220 >gi|190015732|ref|YP_001967248.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus] gi|208702198|ref|YP_002267399.1| hypothetical protein BCH308197_A0144 [Bacillus cereus H3081.97] gi|217956758|ref|YP_002335852.1| hypothetical protein BCAH187_C0116 [Bacillus cereus AH187] gi|116584639|gb|ABK00756.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus] gi|208658053|gb|ACI30423.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217068513|gb|ACJ82761.1| conserved hypothetical protein [Bacillus cereus AH187] Length = 288 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|330811788|ref|YP_004356250.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379896|gb|AEA71246.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 405 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR + ++AG+P+ A +I +P +R V + G S Sbjct: 61 KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 118 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ + +Y E+ + + G L L ++ + +KAK++ Sbjct: 119 AAALRKCPQYFD--ELY---CNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKK 169 >gi|90023218|ref|YP_529045.1| TonB-dependent siderophore receptor [Saccharophagus degradans 2-40] gi|89952818|gb|ABD82833.1| General secretion pathway protein F [Saccharophagus degradans 2-40] Length = 411 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++GLP+ + + QS PV +V G+SL ++++ + R Sbjct: 80 LASLVQSGLPLDEVLQSTAKQSRKPVAKSVLLQVRARVLEGISLHQAMAEVPRV-----F 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L L L+ + + K+Q Sbjct: 135 DNLYRAMVRAGESSGFLGPVLEQLAEYTERSQETRQKLQM 174 >gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM 12286] Length = 630 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE--------S 68 + + + V G P S+AV + + ++S+ ++ T L S + + Sbjct: 413 DFVHAVSGHVSLGRPFSEAVERVAEEVDLGALQSDVDQLAFTLGLTASPDDDATDGRAAA 472 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQALSM 124 + R V + ++ G + + L + +RK +++ + Sbjct: 473 LDRFVERVGTPMAEQTIGLVVGALDAGSDAEDVFETLQTEIGKLYHERKALRSSLLVYVA 532 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 +A ++ + V+ V Sbjct: 533 VGWTTALLVVGIVVAVNAYVL 553 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIET 58 ++ + K R + P A+ + R + +G A+ V + F+R++ Sbjct: 130 LRWVGKARRSDIEATLPGAVRYL-RVLASGEHDQRAMLGRVADQDAYGETAVAFQRILNR 188 Query: 59 QHLGLSLSESISRMVRYMPLQEV 81 L SL E + + P +++ Sbjct: 189 AALTGSLDEGLEHVASETPSRDL 211 >gi|56412416|ref|YP_149491.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361352|ref|YP_002140987.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126673|gb|AAV76179.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092827|emb|CAR58253.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 400 Score = 38.5 bits (89), Expect = 0.48, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|313837846|gb|EFS75560.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] Length = 307 Score = 38.1 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 171 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 230 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q + G +L ++ LRD ++ + ++ ++ + W + Sbjct: 231 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 289 Query: 138 FCVSTLV 144 + L+ Sbjct: 290 SVMLILL 296 >gi|27364323|ref|NP_759851.1| general secretion pathway protein F [Vibrio vulnificus CMCP6] gi|37678400|ref|NP_933009.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016] gi|320157715|ref|YP_004190094.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O] gi|27360441|gb|AAO09378.1| general secretion pathway protein F [Vibrio vulnificus CMCP6] gi|37197139|dbj|BAC92980.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016] gi|319933027|gb|ADV87891.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O] Length = 405 Score = 38.1 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 9/136 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V++G+P+ + + + Q+ P +R V G +L++S+S E+ Sbjct: 74 ISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTLADSLSDYPHIFD--EL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K L ++ V+ Sbjct: 132 Y---RSMVAAGEKSGHLDAVLERLADYCENRQKMRSK---LLQAMIYPVVLVVFAVTIVA 185 Query: 142 TLVYFTSPGYMNVLIN 157 L+ P + +I Sbjct: 186 FLLATVVPKIVEPIIQ 201 >gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon] Length = 674 Score = 38.1 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 7/186 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60 ++ +R K + P A + R + + D + + + V EF+ + + H Sbjct: 148 YIANERKRKININLPFATTFMYAMSRGSVTIIDVIEAVAEAEDTYGQVSVEFQSIANSIH 207 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 L +I + P ++S + G ++ + S + + K Sbjct: 208 YSTNDLRSAIKNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYIEESKEEQKQ 267 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +E + +I+ + + LV + + + G++L +A + +G V Sbjct: 268 ILDQLEVLSEVYIVLFVASPIFVLVINV----VMLFLGASNGNILYALAYLAIPLGGGVF 323 Query: 180 RLMINF 185 ++ Sbjct: 324 TAIVWI 329 >gi|124515782|gb|EAY57291.1| putative general secretion pathway protein F [Leptospirillum rubarum] gi|206602161|gb|EDZ38643.1| Putative general secretion pathway protein F [Leptospirillum sp. Group II '5-way CG'] Length = 400 Score = 38.1 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59 ++ +R AK D + V +G+PV +++ I+ Q DP+ S + E Sbjct: 51 LRQTGGRRRAK-AGDIALFTRQMGILVGSGIPVVESLGAILDQGLPDPMGSTVAAIREDV 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G L +++S R S + + G L L LS L + + KV Sbjct: 110 KEGQPLHQALSLHPRI-----FSDLYVNMIRAGEESGTLDVMLDRLSDFLEKQVETRRKV 164 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + + + +++ Sbjct: 165 LGSL------FYPLILMMVGILMVIFLL 186 >gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8] gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8] Length = 406 Score = 38.1 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 10/136 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + A+A++ Q+ + R ++V G++ SE++S+ Sbjct: 74 LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + G L L L+ L ++ K+++ + + + Sbjct: 128 SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFAVGVAYFLL 187 Query: 142 TLVYFTSPGYMNVLIN 157 T + P + +L + Sbjct: 188 TGIV---PQFAQILTD 200 >gi|328759518|gb|EGF73127.1| membrane associated protein [Propionibacterium acnes HL099PA1] Length = 297 Score = 38.1 bits (88), Expect = 0.50, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDAPLFVQIRQVLNRAALENVDPWNGLDRLADDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q + G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILM 286 >gi|330958211|gb|EGH58471.1| type II secretion system protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 400 Score = 38.1 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q P R+ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALEGTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|18311267|ref|NP_563201.1| type II secretion system protein F [Clostridium perfringens str. 13] gi|18145950|dbj|BAB81991.1| probable pilin biogenesis protein [Clostridium perfringens str. 13] Length = 401 Score = 38.1 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 25 RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +GL + A+ +++ Q P +R V G +L+ S+ + P Sbjct: 73 VMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLANSMRKRKDVFP-----N 127 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 T + + GNL L ++ ++ K++ + ++ + Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184 Query: 144 VYFTSPGYMNVL 155 + F P ++ + Sbjct: 185 LTFVMPTFVQMF 196 >gi|227497417|ref|ZP_03927649.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM 15434] gi|226833093|gb|EEH65476.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM 15434] Length = 231 Score = 38.1 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 17/156 (10%) Query: 8 RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 R + P ALD++ +V G PV A ++V + E ++ Sbjct: 78 RRRQIEASLPEALDVLALAVDTGWQPVQGAERLMVSTFNAAFAHELAGIL-------PPD 130 Query: 67 ES--ISRMVRYMPLQEVSFFSTVISVQS------QLGGNLSEALANLSRILRDRKNMKAK 118 + I +V + E + V+ +Q + G LS L + LR+R+ + Sbjct: 131 GAPLIPELVSRLG-AEPGASAQVLRLQRAFVSAPEGGEVLSGLLRAQAADLRERRRQQLA 189 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 + A +A ++ + + Sbjct: 190 RRVGCRLAFQAALVLLIQVPVMVVAFAVLVRALLEP 225 >gi|119773509|ref|YP_926249.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B] gi|119766009|gb|ABL98579.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B] Length = 419 Score = 38.1 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ P +R ++ G+ LS+++ + ++ Sbjct: 88 IATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALR--PHRIYFDDL 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 146 Y---VDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKK 182 >gi|283779917|ref|YP_003370672.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283438370|gb|ADB16812.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 355 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 9/143 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ D I RA LP+ DA+ + + R V G SL +++ + Sbjct: 11 IEQLACLHDEIAAISRAKLPLGDALTAFGNDVPGKLGAAAREVGSRIASGESLEQAVGAV 70 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P +S V+ + ++G L AL ++ + R + V + A Sbjct: 71 SSHWP----QAYSAVVKIGVRVG-RLPAALEAIADVSRTIVAARRAV----LSAMIPPLF 121 Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155 + L + + TS M Sbjct: 122 VFFLGYGLLLFFIATSAQTMLDF 144 >gi|271501353|ref|YP_003334378.1| general secretion pathway protein F [Dickeya dadantii Ech586] gi|270344908|gb|ACZ77673.1| general secretion pathway protein F [Dickeya dadantii Ech586] Length = 408 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ +A+ + QS P + + V G SL+E++ Sbjct: 77 LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G+L L L+ R+ M++++Q Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170 >gi|291296512|ref|YP_003507910.1| type II secretion system protein [Meiothermus ruber DSM 1279] gi|290471471|gb|ADD28890.1| type II secretion system protein [Meiothermus ruber DSM 1279] Length = 406 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 16/139 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78 + + AGLP+ A+A++ Q+ + +F+ +++ G + SE++S+ Sbjct: 74 LATMLNAGLPIVQALAILERQTE---KKKFQSILKEIRTEVEGGANFSEALSKHSL---- 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L L+ L + ++ K++ A + Sbjct: 127 --FTRLYINLVRAGETSGTLDAILDRLATFLENELALRGKIR---SAMTYPAIVFVFAIG 181 Query: 139 CVSTLVYFTSPGYMNVLIN 157 L+ P + +L Sbjct: 182 VTYFLLTGIVPQFAQILTG 200 >gi|91791492|ref|YP_561143.1| general secretion pathway protein F [Shewanella denitrificans OS217] gi|91713494|gb|ABE53420.1| General secretion pathway protein F [Shewanella denitrificans OS217] Length = 407 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 10/165 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V AGLP+ +A+ + QS D + S V G SL++S++ Sbjct: 76 IATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRVVEGYSLADSLAEFPHI-----F 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ +K+K+ QA+ + IG + + Sbjct: 131 DDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVVLTLVAIGVIGVLL 190 Query: 141 STLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183 + +V G + + G L+ + G++V+ L++ Sbjct: 191 AAVVPKVV-GQFEHMGQELPGTTQFLILASDFVQSYGVLVIGLIV 234 >gi|320108203|ref|YP_004183793.1| type II secretion system F domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926724|gb|ADV83799.1| Type II secretion system F domain protein [Terriglobus saanensis SP1PR4] Length = 399 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 10/148 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 KR L+ F V ++AGLP+ ++ ++ + D ++++ + E G Sbjct: 50 ASKRKKVKLESFLIFNQQFVTLIKAGLPIPGSLQLLGRRQKDLRLKAQLENIAERVKTGE 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SLS + T + + GNL E L R + K++ Sbjct: 110 SLSAAFD------AQGGFPLVYTTTLLAGERSGNLEEVLQRYLDFQRISLTFRKKLK--- 160 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151 ++ + L+ F P + Sbjct: 161 ASMVYPVLLVTLVLSLFIFLITFVVPRF 188 >gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense DSM 11551] gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense DSM 11551] Length = 636 Score = 38.1 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 48/155 (30%), Gaps = 17/155 (10%) Query: 8 RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLG 62 R A+ + + + I V G P +AV + + P+ + + L Sbjct: 405 RRARLDGAKDRELKDFVHAISGHVSLGRPFPEAVEHVAREVELGPLSDDVADLALNLRLT 464 Query: 63 LS--------LSESISRMVRYMPLQ----EVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + ++ R V + + + S G + + R+ Sbjct: 465 SPNTGTDEDLRTAALDRFVERVGTPMAEQTIGLVIGALDAGSDTGTVFETLQSEVGRLYH 524 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +++ +++ + +A ++ + V+ Sbjct: 525 EKRALRSGMLVYVAVGWTTALLVVGITVATGAHVF 559 >gi|228918640|ref|ZP_04082073.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841014|gb|EEM86223.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 210 Score = 38.1 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR + ++ + P L +++ ++ +AV + +R + Sbjct: 51 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 109 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 110 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 167 >gi|148545924|ref|YP_001266026.1| type II secretion system protein [Pseudomonas putida F1] gi|148509982|gb|ABQ76842.1| type II secretion system protein [Pseudomonas putida F1] Length = 402 Score = 38.1 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58 L K+R F ++AG+P+ A V+ D + R+ + Sbjct: 56 LPKRRQKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 108 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 GL L++++ R + + + ++ V Q G L L L+ +L R+ + K Sbjct: 109 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 163 Query: 119 VQA 121 V+ Sbjct: 164 VRK 166 >gi|300821891|ref|ZP_07102035.1| type II secretion system F domain protein [Escherichia coli MS 119-7] gi|300525491|gb|EFK46560.1| type II secretion system F domain protein [Escherichia coli MS 119-7] Length = 400 Score = 38.1 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|238784555|ref|ZP_04628562.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] gi|238714521|gb|EEQ06526.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970] Length = 365 Score = 38.1 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 15/154 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ ++ ++ + P R + + + G SLSE+++ R P Sbjct: 34 LATLLQAGLPLVHSLQLLAKEMDALPWRCLLQEISQQVSQGQSLSEAMTHYPRIFP---- 89 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPFCV 140 + VI++ G L+ L L + + + K+Q ++A K ++ Sbjct: 90 RLYPPVIAM-----GELTGNLEQCCIQLVEHQERQQKLQKKVIKALKYPVFVCIIALVVS 144 Query: 141 STLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172 ++ P + + + P L + +M Sbjct: 145 VLMLVMVLPEFAQIYQSFDTPL--PTLTASLLWM 176 >gi|74310725|ref|YP_309144.1| type IV pilin biogenesis protein [Shigella sonnei Ss046] gi|73854202|gb|AAZ86909.1| putative integral membrane protein [Shigella sonnei Ss046] gi|323165987|gb|EFZ51767.1| bacterial type II secretion system F domain protein [Shigella sonnei 53G] Length = 400 Score = 38.1 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|206972976|ref|ZP_03233898.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|229194288|ref|ZP_04321127.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876] gi|206731860|gb|EDZ49060.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|228589187|gb|EEK47167.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876] Length = 288 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR+ + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|109899536|ref|YP_662791.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] gi|109701817|gb|ABG41737.1| type II secretion system protein [Pseudoalteromonas atlantica T6c] Length = 396 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +G+ + DA+ + P + F + G SLS ++ M +P Sbjct: 64 LQELATLTSSGVALIDAIKALGQNKEHPNLAKGFMLMASRIEGGESLSAAL--MASGLPF 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + +LGG L AL N S L + +K V+ +IGS Sbjct: 122 PQY---VAHLVSAGELGGQLPIALTNASEQLNYEQAIKNDVRGALT---YPLVLIGSGLA 175 Query: 139 CVSTLVYFTSPGYMNVL 155 + + + P + ++L Sbjct: 176 AMLIIFFAVVPKFSHLL 192 >gi|56420969|ref|YP_148287.1| DNA transport protein [Geobacillus kaustophilus HTA426] gi|56380811|dbj|BAD76719.1| DNA transport machinery [Geobacillus kaustophilus HTA426] Length = 338 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 14/151 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81 + R + G P+ A+ + Q+ R E R ++ GL L ++ + M + + Sbjct: 14 LGRLLERGYPLGQALEFLAIQAPTHRRMEVERCLQQLRAGLPLFAAVEALSVDRMAVN-L 72 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 FF+ + G+L +A L + ++ S + +++ L + Sbjct: 73 LFFA-------ERHGDLPRGMAETGEALAQKARFHEQLHRFS---RYPLFLLSLLIIMLV 122 Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170 + ++ P + + RGH +A Sbjct: 123 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 153 >gi|312970200|ref|ZP_07784382.1| bacterial type II secretion system F domain protein [Escherichia coli 1827-70] gi|310337698|gb|EFQ02809.1| bacterial type II secretion system F domain protein [Escherichia coli 1827-70] Length = 400 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|293417980|ref|ZP_06660602.1| transporter HofC [Escherichia coli B185] gi|291430698|gb|EFF03696.1| transporter HofC [Escherichia coli B185] Length = 400 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain [Carboxydibrachium pacificum DSM 12653] Length = 249 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 26/76 (34%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL+I + + G+ + + IV VR G SL +++ Sbjct: 103 EEELPAALEIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALLSA 162 Query: 73 VRYMPLQEVSFFSTVI 88 F+ + Sbjct: 163 ADKSLNDHFKRFAKAV 178 >gi|168264008|ref|ZP_02685981.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347510|gb|EDZ34141.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 400 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYCSFNTPL 199 >gi|260771888|ref|ZP_05880806.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP 69.14] gi|260613180|gb|EEX38381.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP 69.14] Length = 408 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ ++S ++ + G +S+++ Sbjct: 77 LSTMLATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAM-----RTASSLF 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GNL+E L+ + ++AKV + + + + + Sbjct: 132 DPLYVDLVQTGEQSGNLAEVFERLATYREKTEQLRAKVIKALIYPAMVMLVALGVSYLML 191 Query: 142 TLVY 145 T++ Sbjct: 192 TMII 195 >gi|85860074|ref|YP_462276.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] gi|85723165|gb|ABC78108.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] Length = 409 Score = 38.1 bits (88), Expect = 0.55, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ A+ ++V Q+ + ++S ++ + G+SLS +S R Sbjct: 78 LATLLSAGMPLVQALNILVTQTDNQALQSILSQIRKDVVEGISLSAGMSSFPRV-----F 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S F + + G L L L+ ++ K++A + F + Sbjct: 133 SSFYISMVRAGEASGTLPVVLERLADYSEKQQEFARKIKAALAYPILMFLFGALILFFLI 192 Query: 142 TLVYFTSPGYMNVL 155 T V + Sbjct: 193 TFVIPNITEVFEEM 206 >gi|319761633|ref|YP_004125570.1| type ii secretion system f domain protein [Alicycliphilus denitrificans BC] gi|330823499|ref|YP_004386802.1| type II secretion system F domain-containing protein [Alicycliphilus denitrificans K601] gi|317116194|gb|ADU98682.1| Type II secretion system F domain protein [Alicycliphilus denitrificans BC] gi|329308871|gb|AEB83286.1| Type II secretion system F domain protein [Alicycliphilus denitrificans K601] Length = 405 Score = 38.1 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ ++ V + G SL+ + + P+ Sbjct: 75 MATMMKAGVPLLQSFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRK----YPMY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKSKIRSALMYPISVLVVAFVVVTVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D LL +A + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWL 227 >gi|238760526|ref|ZP_04621660.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] gi|238701242|gb|EEP93825.1| Type II secretion system protein [Yersinia aldovae ATCC 35236] Length = 303 Score = 38.1 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 +++ +R ++AGLP+ +++ ++ + P R + + Sbjct: 42 IRYWQGERLITVTRQL-------ATLLQAGLPLVNSLQLLAKEMDALPWRCLLHEISQLV 94 Query: 60 HLGLSLSESISRMVRYMP 77 G LSE+++ + P Sbjct: 95 AQGKPLSEAMAHYPQTFP 112 >gi|223982948|ref|ZP_03633160.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM 12042] gi|223965109|gb|EEF69409.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM 12042] Length = 290 Score = 38.1 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 8/142 (5%), Positives = 42/142 (29%) Query: 37 VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96 + P++ + + ++++ + + +V ++ + GG Sbjct: 137 LKDCAALVEAPLKKDLELCVGQIEANSDFAQALDDLEKKYEYSQVRNLHLLLKGKKIEGG 196 Query: 97 NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + + L + + + + +++ + + L + ++ M V + Sbjct: 197 RNEQLVDYLFDNTEESELLINDYRQKKAASRSVFYFMMILNLLAALVMKKMFHSSMYVNL 256 Query: 157 NDPRGHMLLGVAAAFMLIGIMV 178 + + + + Sbjct: 257 ATETFRFCIFLFYLLNAATLFL 278 >gi|156975735|ref|YP_001446642.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116] gi|156527329|gb|ABU72415.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116] Length = 407 Score = 38.1 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S V G +S+++ Sbjct: 76 IATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASTHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNLS+ L+ + ++AKV A I ++ V+ Sbjct: 131 DPLYTDLIATGEQSGNLSQVFERLATYREKSEQLRAKV--------IKALIYPAMVVLVA 182 Query: 142 TLVYFT 147 V + Sbjct: 183 LGVSYL 188 >gi|157159575|ref|YP_001456893.1| type IV pilin biogenesis protein [Escherichia coli HS] gi|187732598|ref|YP_001878915.1| type IV pilin biogenesis protein [Shigella boydii CDC 3083-94] gi|193063232|ref|ZP_03044323.1| type IV pilus assembly protein PilC [Escherichia coli E22] gi|193071239|ref|ZP_03052160.1| type IV pilus assembly protein PilC [Escherichia coli E110019] gi|194430297|ref|ZP_03062791.1| type IV pilus assembly protein PilC [Escherichia coli B171] gi|209917297|ref|YP_002291381.1| type IV pilin biogenesis protein [Escherichia coli SE11] gi|218552686|ref|YP_002385599.1| type IV pilin biogenesis protein [Escherichia coli IAI1] gi|218693572|ref|YP_002401239.1| type IV pilin biogenesis protein [Escherichia coli 55989] gi|260842340|ref|YP_003220118.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O103:H2 str. 12009] gi|260853318|ref|YP_003227209.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O26:H11 str. 11368] gi|260866257|ref|YP_003232659.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O111:H- str. 11128] gi|307311445|ref|ZP_07591087.1| Type II secretion system F domain protein [Escherichia coli W] gi|331666341|ref|ZP_08367222.1| protein transport protein HofC [Escherichia coli TA271] gi|331680678|ref|ZP_08381337.1| protein transport protein HofC [Escherichia coli H591] gi|157065255|gb|ABV04510.1| type IV pilus assembly protein PilC [Escherichia coli HS] gi|187429590|gb|ACD08864.1| type IV pilus assembly protein PilC [Shigella boydii CDC 3083-94] gi|192931140|gb|EDV83743.1| type IV pilus assembly protein PilC [Escherichia coli E22] gi|192955449|gb|EDV85931.1| type IV pilus assembly protein PilC [Escherichia coli E110019] gi|194411652|gb|EDX27980.1| type IV pilus assembly protein PilC [Escherichia coli B171] gi|209910556|dbj|BAG75630.1| conserved hypothetical protein [Escherichia coli SE11] gi|218350304|emb|CAU95987.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli 55989] gi|218359454|emb|CAQ96992.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli IAI1] gi|257751967|dbj|BAI23469.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O26:H11 str. 11368] gi|257757487|dbj|BAI28984.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O103:H2 str. 12009] gi|257762613|dbj|BAI34108.1| assembly protein HofC in type IV pilin biogenesis, transmembrane protein [Escherichia coli O111:H- str. 11128] gi|306908424|gb|EFN38922.1| Type II secretion system F domain protein [Escherichia coli W] gi|320183609|gb|EFW58452.1| Type IV fimbrial assembly protein PilC [Shigella flexneri CDC 796-83] gi|323157827|gb|EFZ43930.1| bacterial type II secretion system F domain protein [Escherichia coli EPECa14] gi|323160098|gb|EFZ46059.1| bacterial type II secretion system protein F domain protein [Escherichia coli E128010] gi|323176412|gb|EFZ62004.1| bacterial type II secretion system protein F domain protein [Escherichia coli 1180] gi|323181801|gb|EFZ67214.1| bacterial type II secretion system protein F domain protein [Escherichia coli 1357] gi|323380115|gb|ADX52383.1| Type II secretion system F domain protein [Escherichia coli KO11] gi|324017735|gb|EGB86954.1| type II secretion system F domain protein [Escherichia coli MS 117-3] gi|324118454|gb|EGC12348.1| type II secretion system protein F [Escherichia coli E1167] gi|331066552|gb|EGI38429.1| protein transport protein HofC [Escherichia coli TA271] gi|331072141|gb|EGI43477.1| protein transport protein HofC [Escherichia coli H591] Length = 400 Score = 38.1 bits (88), Expect = 0.56, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|290958553|ref|YP_003489735.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260648079|emb|CBG71187.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 263 Score = 38.1 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 4/121 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG A + PV R LG +E+ + ++ Sbjct: 131 CITAGASPVVAARAVGEALGGPVGESLARGSAEVRLGSEPAEAWRGLAALPGAGALARL- 189 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCVSTLV 144 + + G + +A L+ R + A +A +A + + LP ++ V Sbjct: 190 --LERADESGVPAASPVARLAAEARADRGRSATERARRAAVMITAPVGLCFLPAFITVGV 247 Query: 145 Y 145 Sbjct: 248 L 248 >gi|222834546|gb|EEE73023.1| predicted protein [Populus trichocarpa] Length = 183 Score = 38.1 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ ++ +I ++P + G S++ + R +Y Sbjct: 91 LSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRRHPQY-----F 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + GG L L LS + +K ++ Sbjct: 146 DTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQI 183 >gi|206890249|ref|YP_002248063.1| pilin secretion/fimbrial assembly system protein, PilC, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742187|gb|ACI21244.1| pilin secretion/fimbrial assembly system protein, PilC, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 403 Score = 38.1 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISR 71 + ++AG+P++ A+ I + R F+RVI G+ +E+IS Sbjct: 65 LIEFARNLSIMLKAGIPLTTALTDIAENIT---RERFKRVISDIKTMVEKGMPFNEAISM 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + + G L ++L ++ + ++++A ++ + +A Sbjct: 122 HKEVFPS-----VVQYLIKIGEETGRLDKSLDEIANYFQRIEDLRAAIKRALIYPIFAAV 176 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V + + P +N + G + + + IG + Sbjct: 177 VSFG---AVCFWLIYVLPQIVNAMKG--MGIAIPFITQLLIQIGSFL 218 >gi|282165240|ref|YP_003357625.1| hypothetical protein MCP_2570 [Methanocella paludicola SANAE] gi|282157554|dbj|BAI62642.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 296 Score = 38.1 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRY 75 P + V+A + A+ + + E R++ G ++ ++ M Sbjct: 82 PELFYDLSEQVKASGSIVKALKRVSRHEYGTISDEVCRMLSEIEEEGYDIASALRAMALR 141 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + V +VI NL L ++ R +++K + QA + + Sbjct: 142 TKNRYVDRSVSVIIEALTTSSNLESILKAVASEGRLAQSLKKERQAGISSSVFVIYFTAI 201 Query: 136 LPFCVSTL 143 + V+ L Sbjct: 202 IFLAVTML 209 >gi|229142568|ref|ZP_04271049.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26] gi|228640862|gb|EEK97212.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26] Length = 240 Score = 38.1 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + +R + Sbjct: 81 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 139 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 140 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 197 >gi|300923113|ref|ZP_07139173.1| type II secretion system F domain protein [Escherichia coli MS 182-1] gi|301330114|ref|ZP_07222783.1| type II secretion system F domain protein [Escherichia coli MS 78-1] gi|300420568|gb|EFK03879.1| type II secretion system F domain protein [Escherichia coli MS 182-1] gi|300843861|gb|EFK71621.1| type II secretion system F domain protein [Escherichia coli MS 78-1] gi|323945733|gb|EGB41781.1| bacterial type II secretion system protein F containing protein [Escherichia coli H120] Length = 400 Score = 38.1 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|228912576|ref|ZP_04076238.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL 200] gi|228847045|gb|EEM92037.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL 200] Length = 288 Score = 38.1 bits (88), Expect = 0.58, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+KKR+ + ++ + P L +++ ++ +AV + +R + Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|70732017|ref|YP_261762.1| integral membrane protein [Pseudomonas fluorescens Pf-5] gi|68346316|gb|AAY93922.1| integral membrane protein, putative [Pseudomonas fluorescens Pf-5] Length = 388 Score = 38.1 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 52/143 (36%), Gaps = 21/143 (14%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +R+G+ DA+ ++ + +R + G + +++ P Sbjct: 255 FLMNMSVMLRSGINQLDALTILKRGAPPWLRERLDAIHYGVRSGKNFGQALKLAGHRFPD 314 Query: 79 QEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK----ASA 130 + I + + G +E++ + + ++ ++ + +K S+ Sbjct: 315 ------AMAIHYLEVLAVRKG--FAESMERFAS-----RWLEQTLRKVEATSKFLIAFSS 361 Query: 131 WIIGSLPFCVSTLVYFTSPGYMN 153 +G L V ++ + G M+ Sbjct: 362 VCMGVLMILVVVGIFQMARGVMD 384 Score = 34.7 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 58/143 (40%), Gaps = 17/143 (11%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIETQHLG 62 KK +F + L+ G+P+ A+ + S+ E + + Sbjct: 30 KKERIQFYESLMGVLED-------GIPIEVALETVQKAFSND-GKELHPVSIICSEIAMS 81 Query: 63 LSLSESISRMVR-YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + +S+++ R +P +E T + + GNL +A + RI+ R+ + +Q+ Sbjct: 82 VRGGKSLAQSCRSRLPYEE-----TSLIETGEQTGNLVQAFRDCVRIIEIRQRIARLIQS 136 Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144 + + ++ +L + ++ + Sbjct: 137 VVAMPSLTWSLMWALLYVIALWM 159 >gi|310829688|ref|YP_003962045.1| putative type II secretion pathway protein XcpS [Eubacterium limosum KIST612] gi|308741422|gb|ADO39082.1| putative type II secretion pathway protein XcpS [Eubacterium limosum KIST612] Length = 396 Score = 38.1 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 13/172 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64 KK + + I + +G+ V A+++++ ++ P V ++ + G++ Sbjct: 49 KKAYKMKNMELSDFSREIENMLASGITVIRALSIMMERNIKPNVAKVYKALYREVQQGIT 108 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LSE++ P ++ F + G ++E ++ + K++ + Sbjct: 109 LSEAMENSRGSFPQLIINMF-----RAGESSGQMAETAHKMALYYEKEHRLHTKIRNAMI 163 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + + T + P + ++ G A M+IGI Sbjct: 164 YPILLLVATVVVVIGLFTFIL---PQFFDLF----EGMDAALPAITVMVIGI 208 >gi|16128099|ref|NP_414648.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. MG1655] gi|89106987|ref|AP_000767.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. W3110] gi|170021540|ref|YP_001726494.1| type IV pilin biogenesis protein [Escherichia coli ATCC 8739] gi|170079743|ref|YP_001729063.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. DH10B] gi|238899505|ref|YP_002925301.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BW2952] gi|253774866|ref|YP_003037697.1| type IV pilin biogenesis protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037520|ref|ZP_04871597.1| type II secretion system protein [Escherichia sp. 1_1_43] gi|254160226|ref|YP_003043334.1| type IV pilin biogenesis protein [Escherichia coli B str. REL606] gi|256025418|ref|ZP_05439283.1| type IV pilin biogenesis protein [Escherichia sp. 4_1_40B] gi|297517077|ref|ZP_06935463.1| type IV pilin biogenesis protein [Escherichia coli OP50] gi|300949875|ref|ZP_07163840.1| type II secretion system F domain protein [Escherichia coli MS 116-1] gi|300955970|ref|ZP_07168303.1| type II secretion system F domain protein [Escherichia coli MS 175-1] gi|301646418|ref|ZP_07246300.1| type II secretion system F domain protein [Escherichia coli MS 146-1] gi|307136705|ref|ZP_07496061.1| type IV pilin biogenesis protein [Escherichia coli H736] gi|331640557|ref|ZP_08341705.1| protein transport protein HofC [Escherichia coli H736] gi|2506494|sp|P36646|HOFC_ECOLI RecName: Full=Protein transport protein hofC gi|1786295|gb|AAC73217.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. MG1655] gi|85674330|dbj|BAB96674.2| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K12 substr. W3110] gi|169756468|gb|ACA79167.1| type II secretion system protein [Escherichia coli ATCC 8739] gi|169887578|gb|ACB01285.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli str. K-12 substr. DH10B] gi|226840626|gb|EEH72628.1| type II secretion system protein [Escherichia sp. 1_1_43] gi|238860031|gb|ACR62029.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BW2952] gi|242375940|emb|CAQ30621.1| protein transport protein HofC [Escherichia coli BL21(DE3)] gi|253325910|gb|ACT30512.1| type II secretion system protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972127|gb|ACT37798.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli B str. REL606] gi|253976336|gb|ACT42006.1| assembly protein in type IV pilin biogenesis, transmembrane protein [Escherichia coli BL21(DE3)] gi|260450689|gb|ACX41111.1| type II secretion system protein [Escherichia coli DH1] gi|300317190|gb|EFJ66974.1| type II secretion system F domain protein [Escherichia coli MS 175-1] gi|300450753|gb|EFK14373.1| type II secretion system F domain protein [Escherichia coli MS 116-1] gi|301075388|gb|EFK90194.1| type II secretion system F domain protein [Escherichia coli MS 146-1] gi|309700315|emb|CBI99603.1| protein transport protein HofC [Escherichia coli ETEC H10407] gi|315134797|dbj|BAJ41956.1| type IV pilin biogenesis protein [Escherichia coli DH1] gi|315616117|gb|EFU96736.1| bacterial type II secretion system F domain protein [Escherichia coli 3431] gi|323939856|gb|EGB36056.1| type II secretion system protein F [Escherichia coli E482] gi|323960050|gb|EGB55696.1| type II secretion system protein F [Escherichia coli H489] gi|323970776|gb|EGB66030.1| type II secretion system protein F [Escherichia coli TA007] gi|331040303|gb|EGI12510.1| protein transport protein HofC [Escherichia coli H736] gi|332341436|gb|AEE54770.1| type IV pilus assembly protein PilC [Escherichia coli UMNK88] Length = 400 Score = 38.1 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|163846483|ref|YP_001634527.1| hypothetical protein Caur_0905 [Chloroflexus aurantiacus J-10-fl] gi|222524263|ref|YP_002568734.1| hypothetical protein Chy400_0986 [Chloroflexus sp. Y-400-fl] gi|163667772|gb|ABY34138.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] gi|222448142|gb|ACM52408.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 308 Score = 38.1 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 69/202 (34%), Gaps = 33/202 (16%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 + + A+ + + GL + A+ ++ D P+R E+R ++ Q G L Sbjct: 117 RYNRHLERELTPAIGRLSALLSGGLGLRTALERVLTDMGDGPLRDEWRWLLRQQ--GTPL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS------------------R 107 ++ + + ++ Q+ + L +L+ Sbjct: 175 ADG--------SIATLRQVIAALAAQT-SASRHATLLNHLAVAADQPQDLQARRCAAAYA 225 Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---ML 164 L+ + + + + + S +G ++ + T + + + P G ++ Sbjct: 226 ALQVSERRREEALTELAQMRYSGLAVGGAGCLMALYLIATQWERVRIAYSTPLGMVFAVI 285 Query: 165 LGVAAAFMLIGIMVMRLMINFD 186 + +A +IG + + + D Sbjct: 286 VTLALLAPMIGGFLFSQVEDVD 307 >gi|314977797|gb|EFT21891.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1] Length = 297 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|314932289|gb|EFS96120.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1] Length = 297 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|126176110|ref|YP_001052259.1| type II secretion system protein [Shewanella baltica OS155] gi|125999315|gb|ABN63390.1| type II secretion system protein [Shewanella baltica OS155] Length = 422 Score = 38.1 bits (88), Expect = 0.60, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ VR ++ G+ LS+++ RY V Sbjct: 91 IATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYV 150 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A ++ S Sbjct: 151 DLVA-----AGEHSGSLDLVFDRVATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 202 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + + Sbjct: 203 LLLLFVVPQFEEIF 216 >gi|331651002|ref|ZP_08352030.1| protein transport protein HofC [Escherichia coli M718] gi|331051456|gb|EGI23505.1| protein transport protein HofC [Escherichia coli M718] Length = 400 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGIMLTIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|257095698|ref|YP_003169339.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048222|gb|ACV37410.1| type II secretion system protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 412 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 13/178 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + + +K A F ++AG+P+ ++ +P V + Sbjct: 67 RKISEKDIALFTRQL-------ATMMKAGVPLLQTFEIVGRGHDNPAVGKLLLDIKADVE 119 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SLS++ + PL + + G L L L+ +K+K++ Sbjct: 120 TGSSLSQAFRK----YPLH-FDLLYCNLVAAGEQAGILESLLDRLATYKEKMIAIKSKIK 174 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A + + + V D + +A + ++ Sbjct: 175 SALFYPVAIIVVAFIITAVIMIFVIPAFKEVFKSFGADLPAPTQIVIAMSDFVVDYWW 232 >gi|159903363|ref|YP_001550707.1| Type II secretory pathway, component PulF [Prochlorococcus marinus str. MIT 9211] gi|159888539|gb|ABX08753.1| Type II secretory pathway, component PulF [Prochlorococcus marinus str. MIT 9211] Length = 385 Score = 38.1 bits (88), Expect = 0.61, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 58/163 (35%), Gaps = 8/163 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +++G+P++ + ++ + + + G LS + R+ + Sbjct: 49 FFRQLSVMLQSGVPLAQGLELLSENMINKKFAACIFDISRRLSGGQELSSCL-RIYPRI- 106 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + GG LS+ L ++ +L +K ++ + + ++ Sbjct: 107 ---FAPITIGLIEAGEAGGILSKVLERIALLLEANAKLKGQITGALVYPLVVLVLAVTIS 163 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMV 178 + + T + L + G +L ++ G +V Sbjct: 164 LALLIFIVPTFKELFDGLGAELPGLTAFMLLLSNIVTSTGFLV 206 >gi|456044|gb|AAC36925.1| homologous to PilC of Pseudomonas aeruginosa [Escherichia coli] Length = 380 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 42 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 101 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 102 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 152 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 153 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 212 Query: 177 MVMRL 181 ++MR Sbjct: 213 LLMRR 217 >gi|62178711|ref|YP_215128.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224581987|ref|YP_002635785.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126344|gb|AAX64047.1| putative component in type IV pilin biogenesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224466514|gb|ACN44344.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713164|gb|EFZ04735.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 400 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILAMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|39996883|ref|NP_952834.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens PCA] gi|39983771|gb|AAR35161.1| type IV pilus biogenesis protein PilC, putative [Geobacter sulfurreducens PCA] gi|298505896|gb|ADI84619.1| type II secretion system protein PulF [Geobacter sulfurreducens KN400] Length = 402 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++AGLP+ A+ ++ + + V E G++LS+++ + + P Sbjct: 72 LLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALEKHTKVFP---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G+L + L+ + ++ + A ++ ++ Sbjct: 128 HLYVASVR-AGERTGDLQLTIRRYIAFLKRVEEVRKR---FISALVYPAILVTVATLAIT 183 Query: 142 TLVYFTSPGY 151 L+ + P + Sbjct: 184 FLLVYVVPTF 193 >gi|150016556|ref|YP_001308810.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] gi|149903021|gb|ABR33854.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%) Query: 30 GLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 G+ +++A+ ++ S + + V+E G SLS+ S P FF +I Sbjct: 51 GIRITEALDLVADILSSKIYKDSLYGVLELIKQGSSLSQGFSEFKDLYP----EFFIGII 106 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 S+ + G L E L LS +K +++ + +I S+ LV Sbjct: 107 SI-GENTGKLYEVLKGLSVYYDKSLFIKKEIKNACI---YPMFIFISMILLSIFLVNEVI 162 Query: 149 PGYMNVL 155 P + + Sbjct: 163 PNFFEIY 169 >gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec] gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec] Length = 519 Score = 38.1 bits (88), Expect = 0.62, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 19/50 (38%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + +R+G A+ V+ + S+ + G+ E+ R+ Sbjct: 296 VAACLRSGATTQHALEVVGVATGGAAGSQLKAAGRAMRRGVPFDEACDRL 345 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 38/115 (33%) Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 +R++ + +T V G L+ L+ R ++ + ++S Sbjct: 139 ARLLARCEAPALRQLATAYRVCRLAGVRLAPVATMLADAARADAARADELASALAGPRSS 198 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 ++ LP L + VL+ G L L G+ +R + + Sbjct: 199 GRLVAGLPLLGLALGALVGASPVEVLLTGSAGRACLTAGVLLDLAGLRWLRRIAD 253 >gi|56459562|ref|YP_154843.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR] gi|56178572|gb|AAV81294.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR] Length = 392 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 12/159 (7%) Query: 1 MKHLIKKRTAKFLDDFP---NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVI 56 +K L K++ L + +GLP+S+A+ + ++ +R I Sbjct: 41 IKRLSKRQRKLIRPKLSLWYILLQQTASLLESGLPLSEALRHSICETKSRSLRWLIEDCI 100 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + G S S +++ ++P +++ + + G L++AL L + +++ + Sbjct: 101 RSIEHGFSFSRALTYYEHWLPKADINAIAWA-----EQNGQLADALQQLQEL--EKRQHQ 153 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K Q + ++ ++ + P + + Sbjct: 154 LKKQLTKA-LRYPVIVLLVAAGVCFMMMGWVLPAFAQLF 191 >gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon 107 str. F0167] Length = 409 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 19/161 (11%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEF 52 K ++K + + D+P+ + ++ + AGL V + IV + R E Sbjct: 249 KFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWESIVKDYENEYRENNEKRYAYEEM 308 Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---------- 102 + E G + R L++ ++++ + G + L Sbjct: 309 AKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLEQNRRSGISNLHTLLSMESQSAWD 368 Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 L+ R+ + + K+ ++ +P + Sbjct: 369 ERLNLARREGEELNTKLLLPLFIMLLIVMMMIIVPALLIFY 409 >gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 268 Score = 38.1 bits (88), Expect = 0.63, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 7/152 (4%) Query: 7 KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 ++ +F DD L ++ G+ D + +++ + +R R + Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119 +L+++++ M + L E+ ++V + G +L L ++ R + N++ + Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 + M +LP + + Sbjct: 228 ERKRMSVLFEVIAFIALPTIFLVGILILMRAW 259 >gi|229543673|ref|ZP_04432733.1| type II secretion system protein [Bacillus coagulans 36D1] gi|229328093|gb|EEN93768.1| type II secretion system protein [Bacillus coagulans 36D1] Length = 401 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 L DF L ++AG+ V D+ ++ Q+S ++ V E G+ LS++ ++ Sbjct: 61 LQDFVIFLRQFSTLLKAGVTVVDSTNILASQTSSKTLKKTLLAVEEDLRGGIPLSQAAAK 120 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + F ++ + GGNL L L+ + + KV++ A+ Sbjct: 121 HKKVF----TPMFINMVY-AGEAGGNLDGTLERLATYYEKQHRTRQKVRSALT---YPAF 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 + V ++ P ++++L Sbjct: 173 VGVMAIVVVIFMLVKIVPTFVSML 196 >gi|302864941|ref|YP_003833578.1| hypothetical protein Micau_0435 [Micromonospora aurantiaca ATCC 27029] gi|315501226|ref|YP_004080113.1| hypothetical protein ML5_0410 [Micromonospora sp. L5] gi|302567800|gb|ADL44002.1| hypothetical protein Micau_0435 [Micromonospora aurantiaca ATCC 27029] gi|315407845|gb|ADU05962.1| hypothetical protein ML5_0410 [Micromonospora sp. L5] Length = 187 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 4/131 (3%) Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 V GL + + + + Q G L++ L + R Sbjct: 53 LAAVAADLRAGLPVDGGVDDGPGRV----ARLARAAGRLADQTGAPLADLLERIEADARA 108 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 A A + A+A+AW++ +LP L Y + VL++ P G A Sbjct: 109 ADRGLAAAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHTPVGAGSAVAAVVL 168 Query: 172 MLIGIMVMRLM 182 + G++ + Sbjct: 169 QVGGLLWAERL 179 >gi|196231539|ref|ZP_03130397.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196224392|gb|EDY18904.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 406 Score = 37.8 bits (87), Expect = 0.64, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + V AGLP+ + + Q+ ++ RR+I + +S + P Sbjct: 69 LATMVDAGLPLVAGLTALYEQADPKRQAGLRRIIGEVSALVQQGDSFFEAISKHPSVFNR 128 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + +++ + GG L+E L L+ L +K KV++ I+ + C++T Sbjct: 129 LYVSMVK-AGESGGLLAEILDRLATFLESAARLKKKVKSAMTYP----VIVLCIALCITT 183 Query: 143 LVYF 146 + Sbjct: 184 FLIV 187 >gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 402 Score = 37.8 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 69/173 (39%), Gaps = 15/173 (8%) Query: 7 KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64 + K ++ + +VR+GLP+S A++ + + + ++S + H G++ Sbjct: 53 RFRQKINPQDIVELIENLHLTVRSGLPISSALSDLAKDADNNHLQSVLENISNRVHAGMT 112 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 LS+++SR V+ + + + G L L + + ++ ++ K + Sbjct: 113 LSKALSRHSGIFSDITVNL----VRIGEETG-KLDNTLKDAAEHMKKMNDLTTKTK---S 164 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFM 172 ++ + + + + P ++ + P +++G++ F Sbjct: 165 ALIYPSFALVGMILTMVFWLVAVMPKMISAFKSFQIDLPPATKLIMGMSGFFQ 217 >gi|291523558|emb|CBK81851.1| Type II secretory pathway, component PulF [Coprococcus catus GD/7] Length = 404 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 60/157 (38%), Gaps = 9/157 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D V AG+P+ +A+ ++ Q+ + ++ V+ G +L++S+ Sbjct: 63 RDLSVFCRQFVSITEAGVPMKEALQMLAEQTENKWLKRAIAEVLTNVEKGNTLADSMMAF 122 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P ++ + G+L + + ++ ++A + ++ + Sbjct: 123 PDIFP----GMLVNMVR-AGEASGSLELSFSRMATHFEKEAKLRATIMKATI---YPIIL 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 I + V+ ++ F P ++++ + L +A Sbjct: 175 ICAAIGVVAVMLLFVIPIFVDMFADLDVQMPALTLAV 211 >gi|270308518|ref|YP_003330576.1| type II secretion system protein [Dehalococcoides sp. VS] gi|270154410|gb|ACZ62248.1| type II secretion system protein [Dehalococcoides sp. VS] Length = 401 Score = 37.8 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 16/163 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G + ++ ++ Q+++ + R ++ G SLS ++S+ + P Sbjct: 71 LALLLESGTDIVTSLELLQEQTTNKLFRDIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + GG+L L NL+ ++ + K+++ + + Sbjct: 128 --LYHRVIAAGEQGGSLEIVLRNLANFVQRNVETEKKIKSALT---YPGVVAVVGILVLL 182 Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMV 178 +V F P + M + P +L+G++ F G+ V Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-KILIGLSDFFEAWGLYV 224 >gi|300931769|ref|ZP_07147069.1| type II secretion system F domain protein [Escherichia coli MS 187-1] gi|300460429|gb|EFK23922.1| type II secretion system F domain protein [Escherichia coli MS 187-1] Length = 400 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHNLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|254283586|ref|ZP_04958554.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR51-B] gi|219679789|gb|EED36138.1| type IV pilus biogenesis protein PilC [gamma proteobacterium NOR51-B] Length = 402 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 7/164 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + +R + G L+ + + +Y Sbjct: 72 MATMMKAGVPLVQSFDIVSEGVENESMRDLVTTIKNDVAAGGGLANAFEKHPKYFD---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + + G L L ++ + +KAK++ A + + + Sbjct: 128 DLFCS-LVAAGENSGTLETMLDRVATYKEKTEQLKAKIKKALTYPIAVVVVAIIVTGILL 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 V T D G L V ++ + ++I Sbjct: 187 VKVVPTFAETFRGFGADLPGFT-LFVLGISEVVQKWWLAILIGI 229 >gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1] gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 299 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 7/139 (5%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66 +F + +D++ R G+ + ++ F R+ E G + Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R+ + + L E+ + ++++ G ++ +L + LR + + A Sbjct: 213 NALTRVSQELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATE 272 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + G + L+ Sbjct: 273 KLAMPLAGLAGLFIMLLLI 291 >gi|188495497|ref|ZP_03002767.1| type IV pilus assembly protein PilC [Escherichia coli 53638] gi|188490696|gb|EDU65799.1| type IV pilus assembly protein PilC [Escherichia coli 53638] Length = 400 Score = 37.8 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|226944937|ref|YP_002800010.1| type II secretion system protein F [Azotobacter vinelandii DJ] gi|226719864|gb|ACO79035.1| Type II secretion system protein F [Azotobacter vinelandii DJ] Length = 396 Score = 37.8 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 19/174 (10%) Query: 11 KFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67 + + FP L + + AGL + DA+ + +S R ++ + G SLS+ Sbjct: 53 RRREAFPLVLFSQELTTLLNAGLALIDALESLAEKESDAQARKILADLVRLLYEGKSLSQ 112 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ P + S+ G + +AL ++ K+ Sbjct: 113 ALGEFPAVFPP-----LYVALVQSSEKTGAVGDALGRYVAYRTRMDEVRQKI------VS 161 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLIGIMV 178 AS + + L L++ GY+ + + G L ++ + +G + Sbjct: 162 ASVYPLLLLVVGNGVLLFLI--GYVVPRFSLVFEGLGSNLPWLSRVLLSVGQFI 213 >gi|330962485|gb|EGH62745.1| general secretion pathway protein F [Pseudomonas syringae pv. maculicola str. ES4326] Length = 324 Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 11/151 (7%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG P+ A+A+ QS P + S ++E G SLS ++ + S F Sbjct: 1 AGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSLSVAMG-----AEHRTFSNFYLS 55 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + + G L E L+ L+ L + M+ L A+++ + + L+ + Sbjct: 56 LVRAGEAAGMLGETLSQLATNLERSRAMR---SDLISALIYPAFLVCGVFGSLVLLLTYV 112 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P ++ + + L+ M +GI + Sbjct: 113 VPQFVPIFRDLNVPLPLITECI--MALGIFL 141 >gi|295110973|emb|CBL27723.1| Type II secretory pathway, component PulF [Synergistetes bacterium SGP1] Length = 411 Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V+AGL +S A+ +I Q V + V G+ +S+++ Sbjct: 78 FFRQMATMVQAGLTLSMAIDIIAEQERSMVFKDVLLDVKGRLDRGIPMSQAM-----RAH 132 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + GG L +L ++ +L + +K+K+++ Sbjct: 133 PSVFNNMMISLVQAGEEGGLLDNSLERVAGLLEKQAALKSKIRS 176 >gi|154499691|ref|ZP_02037729.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC 29799] gi|150271289|gb|EDM98546.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC 29799] Length = 310 Score = 37.8 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 69/162 (42%), Gaps = 5/162 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ ++ A+ II S +R + AV + ++PV++ F + Sbjct: 118 LRSTAASYKKHLNEELETAISIITTSYLRT-EDLIRAVKENLPYINEPVKANFEAFVYEA 176 Query: 60 HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 L +L+ +I+ + +P + + ++ +Q Q ++ L +++ D + ++++ Sbjct: 177 ELINANLTSAINSLKMKVPNRVFHEWCNIL-IQCQSDRSMKNTLPTIAQKFSDVRVVQSE 235 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDP 159 ++A+ + A + L L+YF + + + L P Sbjct: 236 LEAMMQGPRREAITMMFLVIANVPLLYFLNEDWFHTLIFTTP 277 >gi|83647943|ref|YP_436378.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC 2396] gi|83635986|gb|ABC31953.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC 2396] Length = 406 Score = 37.8 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ P E + G S + ++ + +Y Sbjct: 76 MATMMKAGVPLVQSFDIVADGLEHPSLKELVLDIKNEVAAGNSFAGALKKHPKYFD---- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F +I + G L LA ++ L + +K KV+ Sbjct: 132 DLFCNLID-SGEKSGALETMLARVATYLEKTEILKKKVKK 170 >gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 402 Score = 37.8 bits (87), Expect = 0.70, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG + A V+ ++ + ++ ++ + G +L ++S+ + S Sbjct: 76 LTAGFSIIKAFKVMGQKNRNRTLKKALLKIHDDIEQGQALWVALSQHPKV-----FSSIY 130 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + ++GG L L NLS L +++ AK++ + I + ++ Sbjct: 131 INMIKAGEMGGTLETVLKNLSHHLEREQDINAKIK---AASIYPLIITLMALLVIFFIIS 187 Query: 146 FTSPGYMNVL 155 F P ++NV Sbjct: 188 FIMPAFVNVF 197 >gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629] Length = 290 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 2/152 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K++ + ++ + I + ++ V + + R E V Sbjct: 137 MLKEKREQIEEELYRFVSTITQELKNSRDVLSMLEHYKENAGAAFRKELDIVCADMRS-S 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R + ++S + + G + + L+ + + + K +A Sbjct: 196 SYEAALTRFEARLNSPQLSDVVRGL-IGVLRGDDGAVYFQMLTHDFKQTEFQRLKAKAAK 254 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + L ++T + + Sbjct: 255 IPPKIRVYSFAMLMCFLATYFAIIIYEIIRSM 286 >gi|229065597|ref|ZP_04200827.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603] gi|228715666|gb|EEL67459.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603] Length = 288 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 3/118 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IK+ + P L +++ ++ +AV + +RS + Sbjct: 131 LKRKIKQAIEARKFELPEYLIPLLQLLKT-HTTLEAVKKAEIYAGRHLRSYVSTLTAELE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 190 MYAGSDQPFRNFAASLNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|262198000|ref|YP_003269209.1| type II secretion system F domain protein [Haliangium ochraceum DSM 14365] gi|262081347|gb|ACY17316.1| Type II secretion system F domain protein [Haliangium ochraceum DSM 14365] Length = 403 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 15/153 (9%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F +D AGLP+ + ++ GQ+ + F +V+ + GL S S Sbjct: 66 FTRQLATMID-------AGLPLVQCLDILAGQAEN---KAFAKVLFSVKSGLESGASFSE 115 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +R P + + ++GG L L L+ + +K +V+ Sbjct: 116 SLRKHP-KVFDQLYINLVAAGEVGGILDTILLRLTAYIEKAVKLKRQVKGALT---YPIG 171 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 I+ V+ ++ P + + G L Sbjct: 172 ILVIALGVVAVMLGKVIPS-FQEMYSSFEGAAL 203 >gi|251796112|ref|YP_003010843.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247543738|gb|ACT00757.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 402 Score = 37.8 bits (87), Expect = 0.71, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 +RAG+ + +A ++ Q+ P++ V G+ S+++ R P Sbjct: 68 FCRQFSTLIRAGVTIVEATNILAAQTESKPLKKALVDVSSALLRGIPFSQAVQEHKRIFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSL 136 F ++I + G +L L L+ K K++ A++ A I S+ Sbjct: 128 ----PLFVSMIRAGEETG-DLEGTLDRLALFFEKAHTTKEKIKSAMTYPAVVGLMSIASV 182 Query: 137 PFCVSTLV 144 + + +V Sbjct: 183 IYLLQGVV 190 >gi|328952522|ref|YP_004369856.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452846|gb|AEB08675.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 404 Score = 37.8 bits (87), Expect = 0.72, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60 + + + F ++ + L +AGLP+ ++ + S ++ +++ Sbjct: 61 RRVSSREVVLFTEELADLL-------KAGLPLDRSLQALKEVTSRSGMKEVINQILRDLQ 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +LS+S+SR + PL + + GG L E+L+ LS L+ ++ + Sbjct: 114 GGKTLSDSLSRHKAFSPLY------VSLIQAGETGGFLDESLSRLSDYLQTVSEFRSYLF 167 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM------------NVLINDPRGHMLLGVA 168 + A + + V + +L V Sbjct: 168 TALIYPMILAGMGSLSLVLMLLYVVPRFESFFQEMGQELFWSTRMLLWISQMFRSYWWVL 227 Query: 169 AAFMLIGIMVMRLMIN 184 A F+ I I + ++ Sbjct: 228 ALFLAILIWSISRLLR 243 >gi|254522252|ref|ZP_05134307.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] gi|219719843|gb|EED38368.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14] Length = 338 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + L+++R + + + AG P+ A+++++G D R + + Sbjct: 56 RSLLRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ R S + + GG+L E L L+ L + ++ KV Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVI 169 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++G + V L Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204 >gi|170730041|ref|YP_001775474.1| general secretory pathway protein F [Xylella fastidiosa M12] gi|167964834|gb|ACA11844.1| general secretory pathway protein F [Xylella fastidiosa M12] Length = 405 Score = 37.8 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +V + AG P+ A++++ + R V + G LS ++ R Sbjct: 73 QQLVALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V L + GV A IG Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225 >gi|215405704|ref|ZP_03417885.1| transmembrane protein [Mycobacterium tuberculosis 02_1987] Length = 87 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%) Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + R + +R+ A+V A A+ASA I+ LP L ++ L+ G Sbjct: 1 MRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVG 60 Query: 162 HMLLGVAAAFMLIGIMVMRLMIN 184 LL V G++ + + Sbjct: 61 GWLLVVGLTLACAGLLWSDRITD 83 >gi|59713079|ref|YP_205855.1| general secretion pathway protein F [Vibrio fischeri ES114] gi|197336415|ref|YP_002157257.1| general secretion pathway protein F [Vibrio fischeri MJ11] gi|59481180|gb|AAW86967.1| general secretion pathway protein F [Vibrio fischeri ES114] gi|197317905|gb|ACH67352.1| general secretion pathway protein F [Vibrio fischeri MJ11] Length = 404 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ +++ + Q +RS V G L+ES + Sbjct: 74 LATLVQAGMPLEESLKAVAEQGEKAHIRSMMMGVRSRVIEGYPLAESFADYPHVFD---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 F ++++ + G+L L L+ +R+ M++K+ QA+ + I + F + Sbjct: 130 DLFCSMVA-AGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPIMLTLIAIAVISFLL 188 Query: 141 STLV 144 +T+V Sbjct: 189 ATVV 192 >gi|10567797|gb|AAG18588.1|AF297457_3 pilin biogenesis protein PilC [Pseudomonas fluorescens] Length = 383 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 KR + ++AG+P+ A +I +P +R V + G S Sbjct: 39 KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 96 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ + +Y E+ + + G L L ++ + +KAK++ Sbjct: 97 AAALRKCPQYFD--ELY---CNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKK 147 >gi|330952551|gb|EGH52811.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 363 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I +RA + +A+ + ++ +R +G + E++ P Sbjct: 230 FLLNIAVMLRANIDPLEALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHRFPD 289 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F V+S + S A+ S + ++K + + S +IG L Sbjct: 290 HEAIQFLIVLS----TTHSFSAAVHRYS-LRWLEISLKQVERYAKSLSLVSMVLIGLLMI 344 Query: 139 CVSTLVYFT 147 V Y Sbjct: 345 LVMVGAYSM 353 >gi|225024579|ref|ZP_03713771.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC 23834] gi|224942730|gb|EEG23939.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC 23834] Length = 411 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 20/190 (10%) Query: 2 KHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55 K + +KR + F ++AGLPV A ++ S+ + V Sbjct: 61 KKVREKRITQGDITVFTRQL-------ATMMKAGLPVMQAFDIVAKGHSNASMTKLLMEV 113 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G S++ + + +Y F + + GG L L L+ + Sbjct: 114 RNDIEQGTSMANAFRKHPKY-----FDDFYCNLVDAGEAGGVLESLLDKLAVYKEKTLAI 168 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFML 173 K K+++ A + L + V + + + ++G++ + Sbjct: 169 KKKIKSALTYPIAVVVVAIVLVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVA 228 Query: 174 IGIMVMRLMI 183 G MV+ M+ Sbjct: 229 WGWMVIIAMV 238 >gi|221632416|ref|YP_002521637.1| amidohydrolase family protein [Thermomicrobium roseum DSM 5159] gi|221156656|gb|ACM05783.1| Amidohydrolase family [Thermomicrobium roseum DSM 5159] Length = 534 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90 ++ A+A I ++ DP R + Q G+ ++ + +P V + I + Sbjct: 153 NSLALAIAGIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRL 212 Query: 91 QSQL 94 + Sbjct: 213 AGET 216 >gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1] gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1] Length = 445 Score = 37.8 bits (87), Expect = 0.74, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 13/104 (12%) Query: 5 IKKRTAKFLDDF---PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51 ++R P ++ ++ + G+ V A+ + + R + Sbjct: 284 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 343 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 ++ G+ +++ M + + L S ++ G Sbjct: 344 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 387 >gi|239907482|ref|YP_002954223.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1] gi|239797348|dbj|BAH76337.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1] Length = 409 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77 A ++ + AGLP+ A+A ++ Q F ++E G S +++ P Sbjct: 75 ATQVLATLLEAGLPLDKALAALIEQMRAGRGKWVFSHILERIREGQDFSTALAAYPAVFP 134 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 VS + + G L L NL+ L + + +QA ++ Sbjct: 135 PTYVSMVRSA-----EATGMLPIVLGNLAEYLDRQTQLARTLQAALAYPAFMFVFGLAVM 189 Query: 138 FCVSTLVY 145 + V Sbjct: 190 ALLLAYVI 197 >gi|153003600|ref|YP_001377925.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5] gi|152027173|gb|ABS24941.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5] Length = 409 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 7/134 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D A + AG+P+ +A+ +V Q ++ V + + G +L+++++ Sbjct: 69 RDLAVATRQLAVLAHAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGSALADALAAH 128 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 R S + + G L L L+ + +++K+ A +M + + Sbjct: 129 PRV-----FSTLYVNMIRAGESSGALEIVLVRLADFTESQARLRSKI-AGTMAYPIAMMV 182 Query: 133 IGSLPFCVSTLVYF 146 IG+L + V Sbjct: 183 IGTLIMGILFTVVI 196 >gi|94968418|ref|YP_590466.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] gi|94550468|gb|ABF40392.1| type II secretion system protein [Candidatus Koribacter versatilis Ellin345] Length = 404 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 18/178 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F F +D AGLP+ + ++ G F++ + + ++ Sbjct: 67 FFRQFSVMID-------AGLPLVQCLEILAGNQE---SQAFQKALNGVRTTVEGGSTLGN 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +R P + + + GG L L L+ + +KA V+ Sbjct: 117 AMRGYP-KIFDDLMVNMVDAGETGGILDTILQRLATYVEKAVKLKAAVR---SALIYPVS 172 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +I V L++ P + N+ + P V +G M+ V Sbjct: 173 VITIAVLIVGLLLWKVVPIFANLFVGLGAPLPLPTRIVIGISNFLGSFW--WMVPIMV 228 >gi|82542710|ref|YP_406657.1| type IV pilin biogenesis protein [Shigella boydii Sb227] gi|81244121|gb|ABB64829.1| HofC [Shigella boydii Sb227] Length = 400 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ GQ ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|302342771|ref|YP_003807300.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301639384|gb|ADK84706.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 359 Score = 37.8 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 12/174 (6%) Query: 7 KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS 64 +R ++ N + + V AGLP+ + + S VR+ ++ G S Sbjct: 12 RRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLETVSFMHDSGRVRALTAEMLLAVRGGAS 71 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+ + M + ++ + +L G L++ L L++ LR +K + + + Sbjct: 72 LTRA---MAEQNGVFSPAYLG--LVQAGELSGALAKVLDELAKGLRRNLEIKRHLLTVLL 126 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 A ++ + ++ + P ++ V + L AA + +G + Sbjct: 127 ---YPAVLLAVSFLAILFIMIYVLPTFVGVF--NDMSTPLPPTAAFLLGLGSFM 175 >gi|312194222|ref|YP_004014283.1| type II secretion system F [Frankia sp. EuI1c] gi|311225558|gb|ADP78413.1| Type II secretion system F domain protein [Frankia sp. EuI1c] Length = 501 Score = 37.8 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 14/42 (33%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + + AG V A+ P+ +E R LG Sbjct: 343 VAACLVAGATVPAALEATGDGVGGPLGAELRATARGLRLGAP 384 >gi|182625667|ref|ZP_02953436.1| putative pilus biogenesis protein [Clostridium perfringens D str. JGS1721] gi|177909069|gb|EDT71544.1| putative pilus biogenesis protein [Clostridium perfringens D str. JGS1721] Length = 339 Score = 37.8 bits (87), Expect = 0.76, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ ++ +I D E +R+ + G +LS++ P Sbjct: 19 VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|327183251|gb|AEA31698.1| Competence protein [Lactobacillus amylovorus GRL 1118] Length = 333 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 26/179 (14%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69 + LD + S+ G + ++ + P R E ++ G + S + Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLISSIEL----MPALWPKRKELMGKLAMRMKEGANFSSEL 69 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ FS Q GNL+E L L+ + R ++ K++ E Sbjct: 70 VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + + F S + + ++ G +++ V +L+GI + ++ Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173 >gi|314972764|gb|EFT16861.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] Length = 297 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q + G +L ++ LRD ++ + ++ ++ + W + Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|117924239|ref|YP_864856.1| type II secretion system protein [Magnetococcus sp. MC-1] gi|117607995|gb|ABK43450.1| type II secretion system protein [Magnetococcus sp. MC-1] Length = 408 Score = 37.8 bits (87), Expect = 0.77, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 70/174 (40%), Gaps = 13/174 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 +++ L + ++AG+P+ + I + + ++++ G SL+E+++ Sbjct: 68 MEELAEGLTNMAVMLKAGIPLITCLKDTIADHDNSTLSKVGQQLVMRVEGGSSLAEALAA 127 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA-KVQALSMEAKASA 130 RY P ++ + + G +L + + + + + ++ AL+ Sbjct: 128 YPRYFP----DTLVFLVRLGEETG-SLDQTVRDAAAHTQKMDKIRRDTKSALTYPTFMFV 182 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF------MLIGIMV 178 I G++ F + +V + + ++ P ++ + M+ G+++ Sbjct: 183 AIFGAMFFWIYLVVPPMADMFKQFQLDLPVFTKMVIDGSVVIKANVGMIFGVLL 236 >gi|197250502|ref|YP_002145129.1| type IV pilin biogenesis protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214205|gb|ACH51602.1| protein transport protein HofC [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 400 Score = 37.8 bits (87), Expect = 0.78, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + + + + AGL +S+ + ++ Q ++ R + G+ S ++ Sbjct: 57 EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P + T+I +L G L+E L+ R +K + ++ + Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160 I+ V +++F P + + N P Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199 >gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 434 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 13/104 (12%) Query: 5 IKKRTAKFLDDF---PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51 ++R P ++ ++ + G+ V A+ + + R + Sbjct: 273 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 332 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95 ++ G+ +++ M + + L S ++ G Sbjct: 333 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 376 >gi|297748700|gb|ADI51246.1| General secretion pathway protein F [Chlamydia trachomatis D-EC] gi|297749580|gb|ADI52258.1| General secretion pathway protein F [Chlamydia trachomatis D-LC] Length = 425 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 98 LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 154 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 155 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPVILLVFSCAVVVFFL 212 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 213 IGVIPTLKETFEDM 226 >gi|325290043|ref|YP_004266224.1| Type II secretion system F domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965444|gb|ADY56223.1| Type II secretion system F domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 387 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 14/136 (10%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 ++A + + + IV Q + +R +++ V G +LS+++ + Sbjct: 70 ANLLQAEVSLLKVLDFIVKQEKNDLRKIQWQNVSLDVQSGHTLSQAVQE-----NIPAFG 124 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 F+ + + G L+EA ++ + + KV+ +A L F VS Sbjct: 125 SFAQALIQAGEKSGTLAEAFGRMAGQFEEEYFYREKVK--------TALFYPVLLFLVSM 176 Query: 143 LVYFTSPGYMNVLIND 158 V + + Sbjct: 177 AVLLMLSTLVLPMYES 192 Score = 35.1 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 15/145 (10%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 + I+ R + AG+ V++++ + + P + + G L + Sbjct: 251 HQLIHFCGILGRLLEAGISVNESLEQLRKTVTGPKLLGFIDDLQVRLLQGQPLDSAFL-A 309 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 Y P + + + G +E L N+S I + K + + I Sbjct: 310 NNYFPGETAEILAVG-----EQSGRFAETLLNISVIFKQELGTKME--------RMVKLI 356 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + +S LV F + G + + + Sbjct: 357 EPMMILGISFLVGFVALGVLLPVFD 381 >gi|314929715|gb|EFS93546.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|328906786|gb|EGG26557.1| LOW QUALITY PROTEIN: type II secretion system F domain protein [Propionibacterium sp. P08] Length = 297 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q + G +L ++ LRD ++ + ++ ++ + W + Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b] gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b] Length = 405 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 68/168 (40%), Gaps = 6/168 (3%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 ++ + +RAG+P+ A +++ V S+ ++ +V + G++ SE+I + Sbjct: 63 IEHLIMYVRQFATLIRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKK 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 R S F + +++ + GNL EAL + L+ + ++K KV + + Sbjct: 123 HPRV-----FSNFFSSMALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSI 177 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + V T L + + VA + + + Sbjct: 178 VAIGVVAFLMVNVVPTFASIFGQLGGELPLITRIVVAVSDFIAAFWWL 225 >gi|28198639|ref|NP_778953.1| general secretory pathway protein F [Xylella fastidiosa Temecula1] gi|182681323|ref|YP_001829483.1| type II secretion system protein [Xylella fastidiosa M23] gi|28056723|gb|AAO28602.1| general secretory pathway protein F [Xylella fastidiosa Temecula1] gi|182631433|gb|ACB92209.1| type II secretion system protein [Xylella fastidiosa M23] gi|307579773|gb|ADN63742.1| general secretion pathway protein F [Xylella fastidiosa subsp. fastidiosa GB514] Length = 405 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG P+ A++++ + R V + G LS ++ R Sbjct: 73 QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V L + GV A IG Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225 >gi|26987369|ref|NP_742794.1| type IV pili biogenesis protein PilC [Pseudomonas putida KT2440] gi|24982023|gb|AAN66258.1|AE016254_5 type IV pili biogenesis protein PilC [Pseudomonas putida KT2440] Length = 402 Score = 37.8 bits (87), Expect = 0.79, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58 L K+R F ++AG+P+ A V+ D + R+ + Sbjct: 56 LPKRREKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 108 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 GL L++++ R + + + ++ V Q G L L L+ +L R+ + K Sbjct: 109 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 163 Query: 119 VQA 121 V+ Sbjct: 164 VRK 166 >gi|224370108|ref|YP_002604272.1| GspF2 [Desulfobacterium autotrophicum HRM2] gi|223692825|gb|ACN16108.1| GspF2 [Desulfobacterium autotrophicum HRM2] Length = 409 Score = 37.8 bits (87), Expect = 0.80, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGLPV ++ ++V S +P + + +++ G LSE++ P + Sbjct: 79 LTALLEAGLPVDRSLKILVESSENPKFKLIVKDILKLIEGGSDLSEAMG----RYP-EVF 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S F + ++GG L L L L + + +++ + +++G + Sbjct: 134 SKFYVNMVKAGEVGGILEMVLERLGIFLETSQELTDYIKSALV---YPLFLLGVGGLSII 190 Query: 142 TLVYFTSPGYMNVLIND 158 L+ F P ++ D Sbjct: 191 VLMTFVIPK-FAIMFAD 206 >gi|15838119|ref|NP_298807.1| general secretory pathway protein F [Xylella fastidiosa 9a5c] gi|9106552|gb|AAF84327.1|AE003981_9 general secretory pathway protein F [Xylella fastidiosa 9a5c] Length = 405 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG P+ A++++ + R V + G LS ++ R Sbjct: 73 QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V L + GV A IG Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225 >gi|332098955|gb|EGJ03906.1| bacterial type II secretion system protein F domain protein [Shigella boydii 3594-74] Length = 400 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ GQ ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135 P + G L+ L + R +K + + + I+ Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172 Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176 V +++F P + + N P +L+ + Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232 Query: 177 MVMRL 181 ++MR Sbjct: 233 LLMRR 237 >gi|26987784|ref|NP_743209.1| general secretion pathway protein F [Pseudomonas putida KT2440] gi|24982479|gb|AAN66673.1|AE016295_6 type II secretion pathway protein XcpS [Pseudomonas putida KT2440] Length = 400 Score = 37.8 bits (87), Expect = 0.81, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V+ L+ Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++R + + + + G+L++ L L+ L + + K + + Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A ++G V L+ F P + + L+ + G++ Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 >gi|313497414|gb|ADR58780.1| XcpS [Pseudomonas putida BIRD-1] Length = 400 Score = 37.8 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V+ L+ Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++R + + + + G+L++ L L+ L + + K + + Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A ++G V L+ F P + + L+ + G++ Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 >gi|308048084|ref|YP_003911650.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307630274|gb|ADN74576.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 419 Score = 37.8 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ A+ ++ D VR ++ G LS+++ Q Sbjct: 88 IATMLLAGVPLVTAIEMVGRSHENDAVRKLLAIILAEVQSGTPLSKAL-----RPHRQYF 142 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L + ++ + +K+K++ Sbjct: 143 DDLYCDLVAAGEHSGTLDQVFDRIATYREKSEALKSKIKK 182 >gi|296120429|ref|YP_003628207.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296012769|gb|ADG66008.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 402 Score = 37.8 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG+P+ ++ ++ Q+ + ++ V G L++S+ Sbjct: 71 MSDLLRAGVPLLRSIELLERQTKNQALKRVLEDVRSRVADGGRLADSMKEHPN-----AF 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + I + GG L ++L+ ++ ++ +K+KV ++ V Sbjct: 126 NKLTVSIVHAGEEGGFLEDSLSRVAVFTEHQEELKSKV---VAAMSYPLVLMVLGTIVVV 182 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F PG + + Sbjct: 183 GMIVFFVPG-FEPMFDS 198 >gi|261338902|ref|ZP_05966760.1| hypothetical protein ENTCAN_05099 [Enterobacter cancerogenus ATCC 35316] gi|288318726|gb|EFC57664.1| protein transport protein HofC [Enterobacter cancerogenus ATCC 35316] Length = 398 Score = 37.4 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 29/181 (16%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++AGL +S ++A++ Q P R+ + + + G + SE++ + P Sbjct: 64 QQLATLLQAGLTLSHSLAMLAQQHPLPQWRALLQAIADDLSEGCAFSEALKQWPEVFP-- 121 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPF 138 + V G L+ L R L ++ + ++A M+A + I+ Sbjct: 122 -------PLYVAMVKTGELTGKLETCCRQLAQQQKSQQLLRAKVMKALRYPIIILTLAAA 174 Query: 139 CVSTLVYFTSPGYMNVL--INDPRGH----------------MLLGVAAAFMLIGIMVMR 180 V +V P + + N P ++L V IG +R Sbjct: 175 VVLAMVTLVLPEFAAIYSTFNTPLPWLTQSVMRLSAFIQHHAVVLIVLFITPFIGAYGLR 234 Query: 181 L 181 Sbjct: 235 R 235 >gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM 12653] gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM 12653] Length = 249 Score = 37.4 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL+I + + G+ + ++ IV VR G SL ++++ Sbjct: 103 EEELPAALEIFISGLEVGMNKENIISYIVRTREGVVRDLLYEAQIRLDTGSSLKDALTFA 162 Query: 73 VRYMPLQEVSFFSTVI 88 F I Sbjct: 163 ADKSLNDHFRRFVKAI 178 >gi|71278502|ref|YP_271220.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H] gi|71144242|gb|AAZ24715.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H] Length = 408 Score = 37.4 bits (86), Expect = 0.85, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 73/184 (39%), Gaps = 20/184 (10%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 L++ + +R+G+P+ A+ +V ++ ++ + + G + S +++ Sbjct: 67 LEELIVFCRQMYALMRSGVPILRAINGMVESANSISLKKALTDIGKQLEGGYTFSSALNG 126 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + F +++ V + G L +A L+ L + + +++ + + Sbjct: 127 HPKIFD----HLFVSLVHV-GENTGQLDQAFLKLTTYLERELDTRKRIK---AALRYPSM 178 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLI----NDPRGHMLLGVAAAF-------MLIGIMVMR 180 ++ ++ + L F P + N+ P + ++ ML+GI V+ Sbjct: 179 VLIAIAAAMVILNIFVIPTFANMFTRLGAELPFATRFIIASSNLFINYWHYMLLGIFVVL 238 Query: 181 LMIN 184 +MI Sbjct: 239 IMIR 242 >gi|330872527|gb|EGH06676.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 405 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +R+ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKPEYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ A ++ Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVVVVAVIVSG 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + +V G M+IG+ Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPGFTLMVIGL 217 >gi|302877538|ref|YP_003846102.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] gi|302580327|gb|ADL54338.1| Type II secretion system F domain [Gallionella capsiferriformans ES-2] Length = 403 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 13/178 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K + +K F ++AG+P+ A ++ +P V + Sbjct: 59 KAITQKDITLFTRQL-------ATMLKAGVPLLQAFDIVGKGHHNPSVSRLLFSIKTDIE 111 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G SL ++ + Y + + G L L L+ +K+K++ Sbjct: 112 TGSSLQQAFKKHPLY-----FDDLYCNLIGAGESAGILDSLLERLATYQEKILAIKSKIK 166 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + + V + D L +A + + Sbjct: 167 SALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFIMAISDFFVSYWW 224 >gi|310779619|ref|YP_003967952.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] gi|309748942|gb|ADO83604.1| Type II secretion system F domain protein [Ilyobacter polytropus DSM 2926] Length = 400 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 11/150 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+ + V+ Q P ++ + + G S+S ++S+ +Y Sbjct: 70 LSTMLEGGVGLLRCFTVLEKQCEKPKLKVVVGEIRQDISSGKSISYALSKHPQY-----F 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140 + + G L L +++ + +K K++ A I+ L F + Sbjct: 125 DSLYVSMVKAGEASGALDTILNRIAQSQEKAEEIKGKIRT----AMIYPSIVLVLSFTIV 180 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L+ F P ++ + + L + Sbjct: 181 FLLMSFVIPNFVVLFTDTGVPMPSLTLFVI 210 Score = 35.1 bits (80), Expect = 5.4, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + +G+P+ A ++ + + E R V + G ++++ + + P Sbjct: 277 LDSGVPILSAFDIVADTVGNILMGESIREVKDKIKSGHTIAKPLEESGSFPP-----MVV 331 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ V + G L + L+ L+ + + ++ ++ + +I +L V + Sbjct: 332 NMVDVGEESG-ELVKMLSKLADF--NERELEETIRDSLAAFEPMMILIMALTVGVIVVAM 388 Query: 146 FT 147 + Sbjct: 389 YL 390 >gi|257459470|ref|ZP_05624579.1| type II secretion system protein [Campylobacter gracilis RM3268] gi|257442895|gb|EEV18029.1| type II secretion system protein [Campylobacter gracilis RM3268] Length = 414 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 15/147 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70 F + I VRAG+P++DA+ V + ++ + V G+SL+E+ + Sbjct: 275 FFSTMSRFMLIFTELVRAGIPIADALDTSVLMVDNHTLKEKLSTVKIAVQQGVSLTEAFN 334 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 L E S +IS + GNL + L N++ +++ + + S+ Sbjct: 335 N----TGLYE-SMLIQMIS-AGEQAGNLDKMLGNVTDYYKEKFD--------DIIDNISS 380 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ + F ++ +V + G + + Sbjct: 381 YVEPIMLFFMAGMVLLLALGIFMPMWD 407 >gi|71274718|ref|ZP_00651006.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|71899601|ref|ZP_00681756.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71164450|gb|EAO14164.1| type II secretion system protein [Xylella fastidiosa Dixon] gi|71730643|gb|EAO32719.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 405 Score = 37.4 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG P+ A++++ + R V + G LS ++ R Sbjct: 73 QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V L + GV A IG Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225 >gi|237738597|ref|ZP_04569078.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31] gi|229424080|gb|EEO39127.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31] Length = 345 Score = 37.4 bits (86), Expect = 0.87, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + + + +++ + +G ++ +S + Sbjct: 15 LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTMGKNIYDSFKPFENTFGSTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +L GN+ E+L ++S+ L + + K+ + + ++ VS Sbjct: 75 YILKIG-----ELSGNIVESLEDISKSLDFDLSQRKKLGGILI---YPIVVVCLTFLIVS 126 Query: 142 TLVYFTSPGYMNVL 155 L+ F P ++ + Sbjct: 127 FLLIFILPSFITIF 140 >gi|94313634|ref|YP_586843.1| Type II secretory pathway, gspf-related transmembrane protein [Cupriavidus metallidurans CH34] gi|93357486|gb|ABF11574.1| Type II secretory pathway, gspf-related transmembrane protein [Cupriavidus metallidurans CH34] Length = 413 Score = 37.4 bits (86), Expect = 0.87, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 9/144 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+ V DA+ + G + ++ G SLS ++ P Sbjct: 84 LAALLDAGVGVIDALRTLGGNDRREASARVYGNLLRQLEEGHSLSAAMVNAANVFP---- 139 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + Q GG L+++L SR + ++A+V A + ++ V Sbjct: 140 DVLIACVKASEQTGG-LADSLRRYSRNSATLQALRARV---ISAAIYPSVLLVVGMAVVL 195 Query: 142 TLVYFTSPGYMNVLINDPRGHMLL 165 L+ F P + +L + R L+ Sbjct: 196 FLLAFVVPRFAALLEHSGRELPLM 219 >gi|295425961|ref|ZP_06818636.1| competence protein [Lactobacillus amylolyticus DSM 11664] gi|295064344|gb|EFG55277.1| competence protein [Lactobacillus amylolyticus DSM 11664] Length = 334 Score = 37.4 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 20/176 (11%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + LD + S++ G ++ ++ ++ R + + G SL+ + R+ Sbjct: 16 EEQL-EFLDYLKSSLKNGFSLNSSLELMAVMWPKK-RQLLIALNQRMQNGGSLTTELLRL 73 Query: 73 VRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 FS Q GNL E L+ L+ I R + +++ L +E Sbjct: 74 G----------FSKTTVTQINLALSQGNLVECLSQLTIINRLKNQ---QIKKLWVELSYP 120 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + G + + + F S + ++ G ++L + G+ M+ Sbjct: 121 FVLAGMMIVLLLFMQTFVSTQFQES--SNYTGDIILLSLVVIIGGGVFYFAKMLTL 174 >gi|288959173|ref|YP_003449514.1| carboxyl-terminal processing protease [Azospirillum sp. B510] gi|288911481|dbj|BAI72970.1| carboxyl-terminal processing protease [Azospirillum sp. B510] Length = 478 Score = 37.4 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 9/90 (10%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV-- 87 GL +++AV + PV SE + + G + S++R V + V Sbjct: 141 GLSLNEAV----EKMRGPVGSELKVTVRRGEAGEPFTVSLTRAVIKVQSVRFRTEGNVGY 196 Query: 88 ISV---QSQLGGNLSEALANLSRILRDRKN 114 I + Q L +A+A++ + L D+ Sbjct: 197 IRITSFNEQTQSGLEKAIASIQQQLGDKVQ 226 >gi|85712517|ref|ZP_01043565.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145] gi|85693651|gb|EAQ31601.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145] Length = 348 Score = 37.4 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 68/156 (43%), Gaps = 10/156 (6%) Query: 7 KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64 +R +F + AL+ + + + GLP++ A+ V+ Q+ P ++ ++ + + G+S Sbjct: 5 RRYNQFSTTQWYLALNRLEQLITGGLPLALALGVVAKQTHQPALKRHYQYLQHSVQAGIS 64 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L+E++S R + I+V Q G L + +L + ++++ A V+ Sbjct: 65 LAEALSIEKRRA----LKAAQAGIAVAEQTG-QLPLVMQSLVASWKRQRHISALVKNAL- 118 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 + ++ ++ V + P + + P Sbjct: 119 --RYPVALLFMALIIITVFVTWVLPTIQQLFDSQPL 152 >gi|77361606|ref|YP_341181.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] gi|76876517|emb|CAI87739.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas haloplanktis TAC125] Length = 406 Score = 37.4 bits (86), Expect = 0.91, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A+ + + + + V + G LS ++S M + Sbjct: 74 MYSLLKAGIPIIRAMVGLADTTQNKAFKQVLMEVTKQLEQGRDLSSAMS-----MHNKVF 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S + + + + G L +A L+ + + +++ + ++I +L + Sbjct: 129 SRLTISMVMVGEGAGRLEDAFYQLAIYFEKEQETRKRIK---AAMRYPTFVICALVGAMI 185 Query: 142 TLVYFTSPGYMNVL 155 L F P + ++ Sbjct: 186 ILNIFVIPTFASMF 199 >gi|168214417|ref|ZP_02640042.1| putative pilus biogenesis protein [Clostridium perfringens CPE str. F4969] gi|170714108|gb|EDT26290.1| putative pilus biogenesis protein [Clostridium perfringens CPE str. F4969] Length = 339 Score = 37.4 bits (86), Expect = 0.92, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ ++ +I D E +R+ + G +LS++ P Sbjct: 19 VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|307545368|ref|YP_003897847.1| general secretion pathway protein F [Halomonas elongata DSM 2581] gi|307217392|emb|CBV42662.1| general secretion pathway protein F [Halomonas elongata DSM 2581] Length = 399 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 11/137 (8%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG P+ A+ + Q P R+ + + G +S +++R Sbjct: 68 QQLATLIAAGQPLDKALTTLHRQLRGARP-RALLEALRDDVKAGRPISAALARHAE---- 122 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 S F + + G L E LA L L +N++ +V +++ + Sbjct: 123 -TFSPFYVSLVRAGEASGVLDETLAQLGDDLERSQNLRGEVIN---AMIYPLFLVVGVIG 178 Query: 139 CVSTLVYFTSPGYMNVL 155 V+ L+ + P ++ + Sbjct: 179 SVALLLTYVVPQFVPIF 195 >gi|148546332|ref|YP_001266434.1| general secretion pathway protein F [Pseudomonas putida F1] gi|148510390|gb|ABQ77250.1| general secretion pathway protein F [Pseudomonas putida F1] Length = 400 Score = 37.4 bits (86), Expect = 0.93, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + AG+P+ DA+A + Q P V+ L+ Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++R + + + + G+L++ L L+ L + + K + + Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 A ++G V L+ F P + + L+ + G++ Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 >gi|296133255|ref|YP_003640502.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296031833|gb|ADG82601.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 404 Score = 37.4 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + AG+PV + ++ Q ++P+ E V+ G +LS++++ M Sbjct: 70 FCRQFSTMLNAGIPVMHGLGILTRQMANPLLREATEEVVRDLERGRTLSDAMA-----MH 124 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + +LGG L + L+ + +++KV A + Sbjct: 125 PKVFPALMVNMVEAGELGGILDQVFERLAAYYQREYELRSKV---ISALIYPAVVCLVAM 181 Query: 138 FCVSTLVYFTSPGYMNVL 155 V L+ F P + + Sbjct: 182 LVVGILIVFVLPKFAGLF 199 >gi|229825611|ref|ZP_04451680.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC 49176] gi|229790174|gb|EEP26288.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC 49176] Length = 347 Score = 37.4 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 66/168 (39%), Gaps = 13/168 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 D I + G+P+ + ++ + + ++V + G+S +E++ + Sbjct: 15 FCDQIAMILNGGIPIFEGTHILYEEMDEGRTKDILKKVDDNVKSGMSFNEALKESGAFP- 73 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 ++ ++ + ++ G L + + +LS +K ++++ ++G + Sbjct: 74 ----NYMCEMVKI-GEMTGKLEDIMRSLSGFYERENLVKNSIRSVIS---YPTVLLGMMA 125 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + LV P + ++ + G G M I+V ++++ Sbjct: 126 VILMVLVGKILPMFEDIFLELDAG---TGTTVGIMNTSILVSKVIVCI 170 >gi|294668186|ref|ZP_06733293.1| bacterial type II secretion system protein F domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309894|gb|EFE51137.1| bacterial type II secretion system protein F domain protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 352 Score = 37.4 bits (86), Expect = 0.96, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 20/195 (10%) Query: 1 MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 MK KKR + F ++AGLP+ A ++ +P ++ Sbjct: 1 MKATRKKRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHVNPSMTQLLMA 53 Query: 56 IE-TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + G S+ + ++ +Y F + + GG L L L+ ++ Sbjct: 54 VRSDVEQGSSMGAAFAKHPKY-----FDKFYCNLISAGEAGGVLEHLLDKLAVYKEKTQS 108 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFM 172 +K KV++ A + L + V + + P +++ + F+ Sbjct: 109 IKKKVKSALTYPIAIIVVAIVLVMVMMMYVLPAFGKVYADMGAELPPLTQIMMTASNFFV 168 Query: 173 LIGIMVMRLMINFDV 187 G +V+ +I V Sbjct: 169 SYGWLVIIGLIAMTV 183 >gi|283852777|ref|ZP_06370041.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283571858|gb|EFC19854.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 408 Score = 37.4 bits (86), Expect = 0.98, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%) Query: 29 AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 +G+PV + ++VG + + EFRR+ + G L+ +SR + P T+ Sbjct: 285 SGVPVLTTIDILVGTIGNAAIAKEFRRIQDMIRTGQGLAGPLSRARYFTP-----MVVTM 339 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 ++V + G NL E LA +S + A+V + S + L ++ +V F Sbjct: 340 VAVGEESG-NLDEMLAAISE------HYDAEVSY--SVKRLSDALGPILIVGLAGVVGFF 390 Query: 148 SPGYMNVLIN 157 + + + Sbjct: 391 ALAIFLPMWD 400 >gi|85859841|ref|YP_462043.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] gi|85722932|gb|ABC77875.1| general secretion pathway protein F [Syntrophus aciditrophicus SB] Length = 399 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 56/134 (41%), Gaps = 10/134 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ + ++ ++ + +R V+ G ++ + + + P Sbjct: 70 VSTLLRSGMRIDRSLELLRNGAKKQAIRDVLTAVLNDVKAGGDVAAAFEKTGSFSP---- 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++I V + GNL A N+++ L+ + + +A+++ ++I + Sbjct: 126 -FLVSMIQVN-EAAGNLQAAFENIAQYLKFQISFRAEIRNAMT---YPLFLICASILTFL 180 Query: 142 TLVYFTSPGYMNVL 155 + F P + ++ Sbjct: 181 AIFQFVVPRFFSIF 194 >gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220] gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220] Length = 400 Score = 37.4 bits (86), Expect = 0.99, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%) Query: 29 AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P + ++ + P +V G + ++ E S Sbjct: 276 AGIPFLQGLESVMETLASPFWSQRLAQVHHDISAGKPVWVALKN------CGEFSPLCIQ 329 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAK---VQALSMEAKASAWIIGSLPFCVSTLV 144 + + G+L L NL+ ++ +A+ + IIG+L + + Sbjct: 330 LVRTGEASGSLDAMLRNLAHHHGEKTLSQAENLAALLEPALLVITGLIIGTLVVAMYLPI 389 Query: 145 Y 145 + Sbjct: 390 F 390 >gi|307595208|ref|YP_003901525.1| type II secretion system F domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550409|gb|ADN50474.1| Type II secretion system F domain protein [Vulcanisaeta distributa DSM 14429] Length = 265 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 74/184 (40%), Gaps = 8/184 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSL 65 R++ F N L I++ + +G+ + + ++ + DP + EFR ++ G+ + Sbjct: 76 RSSHFERYLINTLMIMIPLIASGVTLEELISTLATIERDPYIAREFRLILRDAREGGMDI 135 Query: 66 SESISRMVRYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ + +P + + + + L L L L R +R +V Sbjct: 136 LTALRASISRVPSRTYGEIFGLIAETYLISANLADVLMLKLEYLVRNKYNRLRSATQVLG 195 Query: 122 LSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L ME A ++ L + + P Y+ ++ P +++ ++G VM Sbjct: 196 LFMEIYLVVALLLPILLVLIVITLSPLGPIYLGPIVLSPTLALIITTLIYSPVMGY-VMY 254 Query: 181 LMIN 184 ++I+ Sbjct: 255 ILID 258 >gi|257792955|ref|YP_003186354.1| hypothetical protein Aaci_2962 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479647|gb|ACV59965.1| hypothetical protein Aaci_2962 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 326 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 32 PVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTV 87 + A+ V P+R R+ + + ++ + R V+ + + ++ Sbjct: 164 SMLHALQSTVEHLPPSPIRRAVARLTDRLTDYTTPDDARRALHRFVKELGTSWAAQLASD 223 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-PFCVSTLVYF 146 I G N+ +LA L + ++ ++ + ++ + + + P + F Sbjct: 224 IEHALLDGVNVEASLALLHKEFQEIEDARKSQNLARIDTLLISCVPFLMWPVMMVLFYLF 283 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 S +P G + +G ++ Sbjct: 284 VSRNIFQYQFANPTGFTWFLLTL-LATLGSFII 315 >gi|320104346|ref|YP_004179937.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751628|gb|ADV63388.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 415 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 13/119 (10%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG 62 L K+ F D AGLP+ ++ ++ Q+ +++ V+E G Sbjct: 72 LSNKKLCLFTRQLSTLQD-------AGLPILRSLKILENQAKPGVLKNVLGDVVEDIESG 124 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +LSE++++ + + +I + GG L L L+ ++++ +++ Sbjct: 125 STLSEAMAKHPKAFD----RLYCNMIK-AGEAGGALETILQRLADFKEKAQSLRRRIKG 178 >gi|227505649|ref|ZP_03935698.1| type II secretion system protein F [Corynebacterium striatum ATCC 6940] gi|227197802|gb|EEI77850.1| type II secretion system protein F [Corynebacterium striatum ATCC 6940] Length = 176 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L++ V AGL V DA+A + S+ P E +G +S +I+ + L Sbjct: 45 LELFAVCVEAGLSVRDALAGVASTSACPAWQE---AAALLGVGAPMSSAIAVLREQPQLA 101 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRIL 109 ++ + ++ + + G ++ L L Sbjct: 102 DL---AGLLELSGESGAAIAAGCHRLVETL 128 >gi|307545811|ref|YP_003898290.1| general secretion pathway protein F [Halomonas elongata DSM 2581] gi|307217835|emb|CBV43105.1| general secretion pathway protein F [Halomonas elongata DSM 2581] Length = 400 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 13/115 (11%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66 R +D AG+P+ A+ + Q+ ++ G SL+ Sbjct: 61 RLTLLTRQLATLID-------AGIPIGQALEALASQADREAARALLLSLVNRVREGYSLA 113 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +S+ + + G L + L L+ L + + K + Sbjct: 114 DSLKAHP-----ASFDRLYVALVAAGERAGQLPQVLERLADHLERSQRQRQKAKG 163 >gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93] Length = 393 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L + +G+P+ + ++ S+D + +R+ G SLSE+I+ P Sbjct: 62 LRELATLRESGMPLDQCINSLLENSADKQMVLVLKRLHSDIESGSSLSEAIAAQPDSFPY 121 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + S+++ + + G L AL ++S + + + ++V++ + + F Sbjct: 122 ----YVSSMLRL-GEASGQLGNALFSISERIEREEKLVSEVKSALTYPAFLLVVCVATIF 176 Query: 139 CVSTLVY 145 + V Sbjct: 177 FMFLYVI 183 >gi|256810974|ref|YP_003128343.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794174|gb|ACV24843.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 344 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 L +V +RAG + + + I + + E R +I ++ G +L E++ R Sbjct: 178 LLYMVSILRAGASLPEILETISKSNEYGFISFEARSIIRDVNVSGYTLVEALERAKLRTE 237 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRK-NMKAKVQALSMEAKASAWIIGS 135 + + + + G NLS L L + RD + + + + + Sbjct: 238 IPLLKKLYDQMIIGYNKG-NLSMLLEKLYEDIVRDSLSKLDSSKFMIQNLGNLTFGVGLI 296 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 LPF L S ++N + ++ GI V + Sbjct: 297 LPFAGMILSTMISNQGFPGILNTLDLLLTKIGPLLTLIFGIFVKLKI 343 >gi|167622409|ref|YP_001672703.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167352431|gb|ABZ75044.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 420 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+S+ +Y V Sbjct: 89 IATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYV 148 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A ++ + Sbjct: 149 DLVA-----AGEHSGSLDAVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAIMVTA 200 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 201 LLLLFVVPQFEDIF 214 >gi|110798866|ref|YP_696526.1| putative pilus biogenesis protein [Clostridium perfringens ATCC 13124] gi|110673513|gb|ABG82500.1| putative pilus biogenesis protein [Clostridium perfringens ATCC 13124] Length = 339 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ ++ +I D E +R+ + G +LS++ P Sbjct: 19 VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPISLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|158320668|ref|YP_001513175.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs] gi|158140867|gb|ABW19179.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs] Length = 400 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G+P+ A+ V+ + V + E G+ LS++I M + P+ + Sbjct: 273 LSTLMDSGIPLLQAMDVVSRVVGNTVVLDKLTVASENVRKGIPLSKAIHDMKVFPPMVD- 331 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++I + + G L + L + + + + + + L ++ Sbjct: 332 ----SMIKIGEESG-TLDDILNKTADFYDEEVE--------TALQRMTTLMEPILIVVMA 378 Query: 142 TLVYFTSPGYMNVLIN 157 L+ F + L + Sbjct: 379 LLIGFIVIAMVLPLFD 394 >gi|332669357|ref|YP_004452365.1| Type II secretion system F domain-containing protein [Cellulomonas fimi ATCC 484] gi|332338395|gb|AEE44978.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC 484] Length = 163 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%) Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 +LG L++ L ++R + + + +V A +A+ ++ LP L + Sbjct: 60 ELGAPLADVLEQVARAVAADEEHETEVAAALAGPRATTRVLTLLPVAGVLLGMLLGANPV 119 Query: 153 NVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 V+++ G + +L G + Sbjct: 120 GVVLDGGLGTASAALGVVLLLGGRAWTGRLT 150 >gi|325956434|ref|YP_004291846.1| Competence protein [Lactobacillus acidophilus 30SC] gi|325332999|gb|ADZ06907.1| Competence protein [Lactobacillus acidophilus 30SC] Length = 333 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 26/179 (14%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69 + LD + S+ G + +++ + P R E ++ G + S + Sbjct: 15 EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKRKELMGKLAMRMKEGANFSSEL 69 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ FS Q GNL+E L L+ + R ++ K++ E Sbjct: 70 VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + + + F S + + ++ G +++ V L+GI + ++ Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLALVGIYFLAKIVTL 173 >gi|262374059|ref|ZP_06067336.1| general secretion pathway protein F [Acinetobacter junii SH205] gi|262311070|gb|EEY92157.1| general secretion pathway protein F [Acinetobacter junii SH205] Length = 401 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ +A+ + QS V++ V G SL++++ + R E+ Sbjct: 73 LSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQAMQQSGR---FPEL 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140 + + G+L L LS +R M+ K+Q A I+ + F + Sbjct: 130 YIATVA---AGERSGHLDLILDQLSDYTENRFAMQKKIQG----AMIYPIILMLMSFGIV 182 Query: 141 STLVYFTSPGYMNVL 155 L+ + P + Sbjct: 183 MGLMTYVVPEIVKTF 197 >gi|168215471|ref|ZP_02641096.1| putative pilus biogenesis protein [Clostridium perfringens NCTC 8239] gi|182382167|gb|EDT79646.1| putative pilus biogenesis protein [Clostridium perfringens NCTC 8239] Length = 339 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ ++ +I D E +R+ + G +LS++ P Sbjct: 19 VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|187476846|ref|YP_784870.1| general secretion pathway protein F [Bordetella avium 197N] gi|115421432|emb|CAJ47937.1| general secretion pathway protein F [Bordetella avium 197N] Length = 397 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + A LP+ A+ + + Q+ + + V + G LS +++ R E+ Sbjct: 67 LASLLAASLPLDAALTITLEQAEKRHIATTLTGVRDDVRAGHKLSSALASRPR--DFPEI 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+LS+ + L+ + +R +++KV + + + + Sbjct: 125 Y---RALIGAGEESGDLSQVMEKLAHYIEERNALRSKVLTAFIYPVVVGAVSVLIVIFLL 181 Query: 142 TLV 144 V Sbjct: 182 GYV 184 >gi|330721234|gb|EGG99334.1| General secretion pathway protein F [gamma proteobacterium IMCC2047] Length = 405 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+A LP+ +A++ + Q++ P VRS V G +L+ ++ R P E+ Sbjct: 75 LATLVQASLPLEEALSAVAQQTTKPKVRSMVLAVRSKVLEGHTLANALGEFPRAFP--EI 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L + L L+ + K+ + + + + Sbjct: 133 YRATVA---AGEKSGFLDQILNRLADYTESSHESRQKIMMALLYPVILLLLSIIIVVGLM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + P + V I+ G L + M + Sbjct: 190 VYIV---PDVVEVFIDT--GQQLPALTVGLMAFSDFI 221 >gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 409 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 11/123 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRSE 51 + ++KR + L D+P+ + ++ + AGL V + IV E Sbjct: 248 RQKLEKRKRELLKDYPDIVSKLIVFIGAGLSVRQSWEGIVKDYESENKEKRYAKRYAYEE 307 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110 + + G + R L++ ++++ + G + LS L ++ Sbjct: 308 MSKSLARLKTGTQENIVYKDFGRSCLLRQYMKLASLLEQNRKSGISGLSTLLNMEAQSAW 367 Query: 111 DRK 113 + + Sbjct: 368 EER 370 >gi|291333682|gb|ADD93371.1| general secretion pathway protein F [uncultured marine bacterium MedDCM-OCT-S01-C143] Length = 410 Score = 37.4 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 + A + V AG+P+ ++ +V Q P ++ + V + G+ + ++++ Sbjct: 72 ELAVATRQLATLVGAGIPLVQSLTALVDQIEAPRFKAVWADVKTRVNEGVGMGDAMAAYP 131 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 RY S + + G L L L+ + +++ K+ Sbjct: 132 RY-----FSNLYVSMVRAGESSGALEIVLERLADFTESQADLRGKL 172 >gi|289548811|ref|YP_003473799.1| type II secretion system F domain protein [Thermocrinis albus DSM 14484] gi|289182428|gb|ADC89672.1| Type II secretion system F domain protein [Thermocrinis albus DSM 14484] Length = 407 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + V+AG+P+ +A+ VI Q D + + V G+S+S ++ + P Sbjct: 72 FCRQLGTMVQAGVPLVEALNVIAEQMPDRRLSEASQEVARMISEGMSVSAAMRKFPHVFP 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + G + AL S +K K+++ S +++ Sbjct: 132 E-----LVVNLMLVGEETGKIDVALLKASEYYEKMATIKGKIKSASF---YPTFVVIVAV 183 Query: 138 FCVSTLVYFTSPGY 151 VS ++YF P + Sbjct: 184 TIVSGILYFLVPTF 197 >gi|297570198|ref|YP_003691542.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus AHT2] gi|296926113|gb|ADH86923.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus AHT2] Length = 404 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + VR+G+ + +A+ + Q+ P ++S V G + ++ R P E+ Sbjct: 74 LATLVRSGIVLEEALGAVAEQAEKPRLKSVLMAVRSRILEGYAADRALGEFPRVFP--EL 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + G+L L L+ R+ ++ KV Sbjct: 132 YRATLA---AGEQAGHLDVVLERLADYTEARQQLQQKV 166 >gi|91786744|ref|YP_547696.1| type II secretion system protein [Polaromonas sp. JS666] gi|91695969|gb|ABE42798.1| type II secretion system protein [Polaromonas sp. JS666] Length = 405 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + V V G SLS + + PL Sbjct: 75 LATMMKAGVPLLQSFDIVGRGNPNGSVTKLLNDVRTDVETGTSLSAAFRK----YPLY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + + G L L L+ + + +K+K+++ M + + + + Sbjct: 130 NALYCNLVEAGEAAGILESLLDRLAVYMEKTEAIKSKIKSALMYPISVVVVAFVVVAVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L +A + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVIAVSEFFVAYWWL 227 >gi|156937800|ref|YP_001435596.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I] gi|156566784|gb|ABU82189.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I] Length = 326 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 13/168 (7%) Query: 29 AGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +G S+A+ + +S + +RV LG + E + + P ++ S Sbjct: 153 SGTTYSEALRKLYEKSESLGAEPELGEVVKRVFI---LGEDIVEVLKEVAEMTPHRDFSN 209 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW-----IIGSLPF 138 F ++ + G L K K ++E + + ++ L Sbjct: 210 FLRGLANVIESGTGLENFADVGFETSMASMEAKMKEVMGALEIMSEMYVTGAAVMPILGL 269 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++ P + ++ P LL AF+ I ++ + ++ D Sbjct: 270 SFAVVLSTMGPAAQSFGLSLPVPPGLLAGLMAFLAIPLLSIFAILMVD 317 >gi|90020509|ref|YP_526336.1| type IV pilus biogenesis protein PilC [Saccharophagus degradans 2-40] gi|89950109|gb|ABD80124.1| type II secretion system protein [Saccharophagus degradans 2-40] Length = 405 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ S + + R++ + G + S+ + +Y Sbjct: 75 MATMMKAGVPLVQSFEIVSNGSENKSLAELIRQIKDDVASGSGFAPSLRKHPKYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L L ++ + +KAK++ ++ Sbjct: 131 ELFCNLVE-SGEQSGALETMLDRIATYKEKTEQLKAKIKKALT---YPIAVLVVAGIVSM 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + G L A M++G+ Sbjct: 187 ILLIKVVPQFAASF--SSFGAEL--PAFTMMVLGM 217 >gi|288572882|ref|ZP_06391239.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568623|gb|EFC90180.1| type II secretion system protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 383 Score = 37.4 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +R+G+P+ A+ + DP + + + + GL +++ + +++ Sbjct: 259 LGSLLRSGIPLVQALRMSA--VLDPRKDRWMAIADQVKGGLRFEKALEK--DGTFDEDLV 314 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 +F + ++GG+L+ AL +++ DR Sbjct: 315 YFVRI----GEIGGDLAGALEQIAQTRWDRARA 343 >gi|294666986|ref|ZP_06732215.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603275|gb|EFF46697.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 418 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 13/162 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A+ +I +P ++ ++ G SL E+IS P+Q Sbjct: 88 MATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAIS----RHPVQ-F 142 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + + +K K++ A ++ Sbjct: 143 DDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALF---YPAMVMAVAIIVSG 199 Query: 142 TLVYFTSPGYMNVL----INDPRGHMLLGVAAAFMLIGIMVM 179 L+ F P + +V P ++ A+ FM+ M Sbjct: 200 ILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWFM 241 >gi|242081993|ref|XP_002445765.1| hypothetical protein SORBIDRAFT_07g025400 [Sorghum bicolor] gi|241942115|gb|EES15260.1| hypothetical protein SORBIDRAFT_07g025400 [Sorghum bicolor] Length = 872 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKN-----MKA 117 ++ ++ + P +V ++VI QL GG+ + AL+++++ +R ++ Sbjct: 164 TVDDA--NVNPRYPSPDV--LASVIERAQQLLGGSAASALSHIAQRIRQDGETADASLRR 219 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 ++Q S++ S +G++ F + + Sbjct: 220 EIQTESVQLGISMQHLGAMFFELGRTMMML 249 >gi|196048208|ref|ZP_03115385.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196020945|gb|EDX59675.1| conserved hypothetical protein [Bacillus cereus 03BB108] Length = 288 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IK+ + P L +++ ++ +AV + +R + Sbjct: 131 LKRKIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 190 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|170724682|ref|YP_001758708.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810029|gb|ACA84613.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 420 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I ++AG+P+ + ++ +R ++ G+ LS+++ Q Sbjct: 89 IATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDAL-----RPHRQYF 143 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ +A +I ++ Sbjct: 144 DDLYVDLVAAGEHSGSLDAVFERIALYKEKAEALKSKIK--KAMFYPAAVVIVAIGVTTL 201 Query: 142 TLVYFTSPGYMNVL 155 L++ P + + Sbjct: 202 LLLFVV-PQFQEIF 214 >gi|113475417|ref|YP_721478.1| type II secretion system protein [Trichodesmium erythraeum IMS101] gi|110166465|gb|ABG51005.1| type II secretion system protein [Trichodesmium erythraeum IMS101] Length = 377 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 29 AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P+ + V+ Q+S+ ++ +++ G LSE++ F ++ Sbjct: 50 AGVPMIRCLRVLKDQTSNAKIKYALKQISGEVEKGNELSEAMKEHPACFD----ELFISM 105 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 ++ ++GG L E L L+ +L +++ + K +I ++ F ++T + T Sbjct: 106 VA-AGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTFLLPT 164 Query: 148 SPGYMN 153 G Sbjct: 165 FAGIFE 170 >gi|298527741|ref|ZP_07015145.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511393|gb|EFI35295.1| Type II secretion system F domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 419 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 47/136 (34%), Gaps = 6/136 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + ++AG+ ++ ++A++ + + + + V G L +++ P Sbjct: 87 EHLGAMLKAGITMNKSLALLGDLTENRSLARVIKDVHSRIREGSHLYQALEEHPEVFP-- 144 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 F ++ + GG L L LS + + ++ + + + + Sbjct: 145 --EVFINMVR-AGESGGILDVILERLSEFMNEMARLREHLVSSMIYPAILGLTAAASMLV 201 Query: 140 VSTLVYFTSPGYMNVL 155 + +V + Sbjct: 202 MLVVVIPRFADIFVDM 217 >gi|149177768|ref|ZP_01856368.1| General secretion pathway protein F [Planctomyces maris DSM 8797] gi|148843418|gb|EDL57781.1| General secretion pathway protein F [Planctomyces maris DSM 8797] Length = 362 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 24/182 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 I+ V+AG+P+ + + + D + + G +L E+++ V Sbjct: 29 IISLVQAGIPLELGLREMGNELPDRLGRITADLATRMERGSTLPEAMA--AEGACFPRVY 86 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCVS 141 + G L+ AL +S + +++ ++ A+ + G + Sbjct: 87 RVIVEAGI---KSGKLTVALEEMSNYAWELFHLRRQIGMAMVYPLIVFSLAYGLFMIFLF 143 Query: 142 TLVYFTSPGY-------------MNVLINDPRGHMLLGVAAAFMLIGIMVMR----LMIN 184 ++ + Y +N + + ++ L I+ MR ++N Sbjct: 144 EVLSRFNAAYDIFRLSESKPLQLLNSMQSTVVYWGMVPP-LVLFLFAILWMRTGSSQLLN 202 Query: 185 FD 186 F Sbjct: 203 FK 204 >gi|239827897|ref|YP_002950521.1| type II secretion system protein [Geobacillus sp. WCH70] gi|239808190|gb|ACS25255.1| type II secretion system protein [Geobacillus sp. WCH70] Length = 403 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L DF L ++AG+ + D+ ++ Q+ +++ V E+ G LS + ++ Sbjct: 62 LQDFVIYLRQFATLIKAGVSIVDSTRILASQTESKALKNALMEVEESLRAGNPLSAAAAK 121 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 R P + F ++ + GGN+ E L L+ K K+ + Sbjct: 122 HPRIFP----AMFVNMVK-AGEAGGNMDETLERLADHFEKIHRTKQKIVSALA 169 >gi|254517637|ref|ZP_05129693.1| type II secretion system protein [Clostridium sp. 7_2_43FAA] gi|226911386|gb|EEH96587.1| type II secretion system protein [Clostridium sp. 7_2_43FAA] Length = 400 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+ ++ + ++ + + +R + + G LSES+++ +Y P Sbjct: 75 LDAGVTITTCLNILSNEIPNKKLRELLSIIEDDVKKGELLSESMAKHKKYFP----QLLI 130 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +++ ++ GN+ E + +S + KV+ + + V ++ Sbjct: 131 SMVE-SGEVSGNIDEMMLRMSVHFEKENKINNKVK---SAMTYPSILSIVAVIAVVFIMT 186 Query: 146 FTSPGYMNVLINDPRGHMLLG 166 F P ++ + + L+ Sbjct: 187 FVMPTFIEMFEGEGIDLPLIT 207 >gi|168210794|ref|ZP_02636419.1| putative pilus biogenesis protein [Clostridium perfringens B str. ATCC 3626] gi|170711113|gb|EDT23295.1| putative pilus biogenesis protein [Clostridium perfringens B str. ATCC 3626] Length = 339 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V++G+P+ ++ +I D E +R+ + G +LS++ P Sbjct: 19 VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ + + G NL E L +R + K +K K+ + ++ L + V Sbjct: 75 DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPISLLIGLIIMIFGYVT 130 Query: 146 FTSPGYMNVL 155 + P ++++ Sbjct: 131 YILPQFVDMY 140 >gi|120555558|ref|YP_959909.1| type II secretion system protein [Marinobacter aquaeolei VT8] gi|120325407|gb|ABM19722.1| type II secretion system protein [Marinobacter aquaeolei VT8] Length = 398 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 12/152 (7%) Query: 28 RAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 R+G+ + DA+ + G+ + ++S F R G S S+++ +P+ E F Sbjct: 74 RSGVSLKDAIDSLTGGERAAAMQSVFDRWSSGLRQGESFSDALR--ASGVPVPEYLF--- 128 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + +L G + ++L + K + +++ + A + S V + F Sbjct: 129 QLVKAGELTGEMGDSLQTAVSQMEYEKQIATEMKNALV---YPAILCFSGVGAVLLVFTF 185 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P + N+L G L +A A + G V Sbjct: 186 VVPQFQNLL---EHGDKLPWLAWAVLATGKWV 214 >gi|192359121|ref|YP_001983190.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus Ueda107] gi|190685286|gb|ACE82964.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus Ueda107] Length = 428 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ +P ++S + + G + S+ + RY Sbjct: 98 MATMMKAGVPLVQAFDIVADGLENPNMKSLVLEIRDDVAAGGGFAASLRKHPRYFD---- 153 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F ++ + G L L ++ + +KAK++ Sbjct: 154 DLFCNLVD-AGEQSGALETMLDRIATYKEKTEALKAKIKK 192 >gi|117618056|ref|YP_858309.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559463|gb|ABK36411.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 413 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ ++ +I +R ++ G +SE++ R R+ Sbjct: 82 ITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRH-----F 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ +I S Sbjct: 137 DDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPTMVILVAIVVTS 193 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 194 ILLLFVIPQFEDIF 207 >gi|6176560|gb|AAF05620.1|AF190908_1 XpsF [Xanthomonas oryzae pv. oryzae] Length = 156 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 9/121 (7%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R V +T Sbjct: 40 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 97 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + ++ K Sbjct: 98 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 152 Query: 119 V 119 V Sbjct: 153 V 153 >gi|330444857|ref|ZP_08308512.1| general secretion pathway protein F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489167|dbj|GAA03009.1| general secretion pathway protein F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 408 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+A +P+ + + + Q+ P +++ V G +L++S++ Sbjct: 77 LATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEFPHI-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K+Q + + S+ V+ Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P ++ + G L + + V Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|90417995|ref|ZP_01225907.1| possible general secretory pathway protein [Aurantimonas manganoxydans SI85-9A1] gi|90337667|gb|EAS51318.1| possible general secretory pathway protein [Aurantimonas manganoxydans SI85-9A1] Length = 404 Score = 37.0 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+ + A+ +I ++ P + R + + +G SL+E+ P V Sbjct: 76 LSALLTAGVALDRAILIISQTATKPVIAVLLRDLHQAISMGQSLAEATGNHPTAFPANYV 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + G L E LA L+R + + ++ ++ + Sbjct: 136 KIVQVA-----EAAGTLPETLAVLARERQRSEELRRRISSALA 173 >gi|198283215|ref|YP_002219536.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665636|ref|YP_002425446.1| type IV pilus biogenesis protein PilC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247736|gb|ACH83329.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517849|gb|ACK78435.1| type IV pilus biogenesis protein PilC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 419 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + + + AG+P+ + ++V +S ++ + +++ G SLS++++ Sbjct: 75 EAQLVVMVRQLSTMINAGVPIVQSFELLVSATSGAGMKKLLKGILKHLKEGESLSQAMAH 134 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +Y F + + + GG L L L+ + KV++ Sbjct: 135 FPKYFD----RLFVS-LVAAGEQGGILDTILLRLAEYREKTLALNKKVKS 179 >gi|160902099|ref|YP_001567680.1| type II secretion system protein [Petrotoga mobilis SJ95] gi|160359743|gb|ABX31357.1| type II secretion system protein [Petrotoga mobilis SJ95] Length = 382 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 16/142 (11%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74 + +++GL + +A+ +++ ++ + S F G L+E S+ Sbjct: 244 LHEFTRNVNLLLKSGLTIYNALEIVLSNTNSQYISSTFLTAYLDIEKGKDLTEVFSK--- 300 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +++V FS +SV + G N E L + K I Sbjct: 301 ---IKDVKEFSLTMSVSKRKG-NYKEVFDFLENYYYSSFK--------TASDKIMKMIEP 348 Query: 135 SLPFCVSTLVYFTSPGYMNVLI 156 L +S ++ + + + Sbjct: 349 VLIIFLSVIILSLAFEIYSNVY 370 >gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 403 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63 ++ R + D + AG+P+ A+ VI Q + + G Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 LS +++ P +I ++ G++ +AL ++ ++ K+ Sbjct: 114 MLSRALAEKAECFP----PILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + A +I + ++ F P ++ + Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197 >gi|111225902|ref|YP_716696.1| hypothetical protein FRAAL6567 [Frankia alni ACN14a] gi|111153434|emb|CAJ65190.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a] Length = 432 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 12/171 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLSESI 69 + L + AG P A+ D P R+ +T + ++ Sbjct: 62 DFLAAFAAELDAGGPHGHALRAAARGIDDLGAAPGQHPDWIPLDRLADTLAGPEDPAVAL 121 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 V V + +G L+ A L+ + R ++ A ++S Sbjct: 122 C----RNEAGGVRQLGIAYQVCTMVGARLAPATTMLATLARADAVRAGELAAALAGPRSS 177 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ +LP L ++ L+ P G+ L L G+ +R Sbjct: 178 GRLVAALPLAGIALGSLAGAQPLHTLLATPAGNACLLAGGLADLAGLRWLR 228 >gi|255322157|ref|ZP_05363303.1| type II secretion system protein [Campylobacter showae RM3277] gi|255300530|gb|EET79801.1| type II secretion system protein [Campylobacter showae RM3277] Length = 415 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 15/137 (10%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 I VRAG+P++DA+ + + + + G+SL+E+ + Sbjct: 285 IFTELVRAGIPIADALETATLTVENQDIHDKLATIKIAVQRGVSLTEAFRD-TQLYESML 343 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + S + GG + L ++ K + + S+++ + + Sbjct: 344 IQMLS-----AGEKGGAIDTMLEKVTDYY--------KAKFSDLVDNISSYVEPIMLLFM 390 Query: 141 STLVYFTSPGYMNVLIN 157 + +V + G + + Sbjct: 391 AGMVILLALGIFMPMWD 407 >gi|157146466|ref|YP_001453785.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895] gi|157083671|gb|ABV13349.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895] Length = 402 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 8/159 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ A+ I Q+ D + + + G +L ++ S+ R Sbjct: 72 LSTLVNAALPLESALKAISKQTEDKKLAVMVGEIRDKVVEGHTLFDAFSQFPR-----TF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + + G+L L L+ R+ MK+K+ QA+ + I + + Sbjct: 127 DKLYCTLVMAGEKTGHLGGVLEKLAEYNEQRQKMKSKLSQAMVYPITLTVVAIAVISILL 186 Query: 141 STLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMV 178 +V ++++ P L+ V+ G+++ Sbjct: 187 VAVVPQVIEQFVHMKQQLPVTTRTLIAVSDFLQAYGMVI 225 >gi|120597346|ref|YP_961920.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|146294509|ref|YP_001184933.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|120557439|gb|ABM23366.1| type II secretion system protein [Shewanella sp. W3-18-1] gi|145566199|gb|ABP77134.1| type II secretion system protein [Shewanella putrefaciens CN-32] gi|319427874|gb|ADV55948.1| type IV pilus inner membrane protein, PilC [Shewanella putrefaciens 200] Length = 421 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 6/104 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A I + AG+P+ + ++ +R ++ G+ LS+++ RY Sbjct: 86 ATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFD 145 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 V + + G+L ++ + +K+K++ Sbjct: 146 DLYVDLVA-----AGEHSGSLDAVFDRIATYREKAEQLKSKIKK 184 >gi|291615062|ref|YP_003525219.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291585174|gb|ADE12832.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 413 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 10/157 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A+A + S +PV + + + E+ G LS ++ R + Sbjct: 81 MYTLLKAGVPIMRALAGLQESSRNPVFSAMLQDLRESLDSGRELSTALRRHPKI-----F 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S F + ++ G L L L K+MK +++ + +++ ++ + Sbjct: 136 SPFYLSMVQVGEMTGMLDVTFLRLYEHLEFEKDMKERIK---SAVRYPMFVLVAMAVAIV 192 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + F P + + L G MV Sbjct: 193 IVNIFVIPA-FAKVFEGFHAQLPLMTRILMGFSGFMV 228 >gi|288818478|ref|YP_003432826.1| general secretion pathway protein F/pilus assembly protein [Hydrogenobacter thermophilus TK-6] gi|288787878|dbj|BAI69625.1| general secretion pathway protein F/pilus assembly protein [Hydrogenobacter thermophilus TK-6] gi|308752068|gb|ADO45551.1| Type II secretion system F domain protein [Hydrogenobacter thermophilus TK-6] Length = 388 Score = 37.0 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ KFL+ F + L + +++GL V A+ I + + +V E G +LS Sbjct: 49 RKDTKFLERFTSNLLQL---LKSGLTVDKALLFIAERERK-YHQKLLKVYEEIRSGSTLS 104 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ R+ P F+ +I + G +L E L+ + +++ +K+ + + Sbjct: 105 MAL-RLSNLFP----DFYVQMIRSAEESG-SLEETLSLILDFIKEENELKSSIITAML-- 156 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +++ G F + + + P + V + LL A F+ Sbjct: 157 -YPSFVFGVSLFSLLIISSYVVPKFRLVFQSTDVKLPLLTRAMFFLT 202 >gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32] gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 238 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 9/142 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 LD++ +RAGLPV A+ + G + + LG E+ + + Sbjct: 97 LAGTLDLLAACLRAGLPVPSALEAVAGSAPAAASTALSSTAGLLALGSPPHEAWAPVQAA 156 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L E++ + I + A R RD +A+ +A A + + Sbjct: 157 PGLGELA--AAAIRTSRSGAAFAAAAGDLAGRF-RDELATEAEERAER------AGVALA 207 Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157 LP + L F G + V++ Sbjct: 208 LPVGLCFLPAFFCLGVLPVVLG 229 >gi|314957235|gb|EFT01339.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1] Length = 228 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 92 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 151 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 152 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 210 Query: 138 FCVSTLV 144 + L+ Sbjct: 211 SVMLILL 217 >gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4] gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 299 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 7/139 (5%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66 +F + +D++ R G+ + ++ F R+ E G + Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R+ + L E+ + ++++ G ++ +L + LR + + A Sbjct: 213 NALTRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATE 272 Query: 127 KASAWIIGSLPFCVSTLVY 145 K + + G + L+ Sbjct: 273 KLAMPLAGLAGLFIMLLLI 291 >gi|295706584|ref|YP_003599659.1| ComG operon protein [Bacillus megaterium DSM 319] gi|294804243|gb|ADF41309.1| ComG operon protein [Bacillus megaterium DSM 319] Length = 348 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + + + G +S A++ + Q S+ +++ + +E G SL ++ ++ + + Sbjct: 20 LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKLQFHRDIL 79 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +F+ + GNL AL S ++ ++ + K Q L Sbjct: 80 SYLYFA-------EQHGNLQFALKESSSMIEEKVRHRKKFQKL 115 >gi|323964799|gb|EGB60266.1| type II secretion system protein F [Escherichia coli M863] gi|327255083|gb|EGE66686.1| bacterial type II secretion system protein F domain protein [Escherichia coli STEC_7v] Length = 400 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 11/146 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160 V +++F P + + N P Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199 >gi|315081087|gb|EFT53063.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1] Length = 297 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|300919660|ref|ZP_07136151.1| type II secretion system F domain protein [Escherichia coli MS 115-1] gi|300413300|gb|EFJ96610.1| type II secretion system F domain protein [Escherichia coli MS 115-1] Length = 400 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKL 233 Query: 178 VMRL 181 +MR Sbjct: 234 LMRR 237 >gi|295133064|ref|YP_003583740.1| aminopeptidase [Zunongwangia profunda SM-A87] gi|294981079|gb|ADF51544.1| secreted aminopeptidase [Zunongwangia profunda SM-A87] Length = 705 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 18 NALDIIVRSVRAGLPVS-DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 ALD+ ++ G A+A + + P++SEF ++ L+ ++ + Sbjct: 512 EALDLYKKAFETGNIFVRQAIASSMKEIPQPLKSEFEDLLNDDSY-LTKEYALMTLWTNF 570 Query: 77 PLQEVSFFSTVISVQ 91 P+ + S ++Q Sbjct: 571 PMDRAKYLSKTRNIQ 585 >gi|294501237|ref|YP_003564937.1| ComG operon protein [Bacillus megaterium QM B1551] gi|294351174|gb|ADE71503.1| ComG operon protein [Bacillus megaterium QM B1551] Length = 348 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L + + + G +S A++ + Q S+ +++ + +E G SL ++ ++ + + Sbjct: 20 LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKLQFHRDIL 79 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +F+ + GNL AL S ++ ++ + K Q L Sbjct: 80 SYLYFA-------EQHGNLQFALKESSSMIEEKVRHRKKFQKL 115 >gi|291455824|ref|ZP_06595214.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM 20213] gi|291382752|gb|EFE90270.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM 20213] Length = 200 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 L ++ S+R G V A+ V+ RV E+ G+S S++ Sbjct: 34 VLRMVQVSLRQGASVPRALDVVGRAVGGAYGQCLSRVGESLLRGVSWSDA 83 >gi|254483146|ref|ZP_05096380.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036668|gb|EEB77341.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 401 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ A+ V++ ++ +++ G +LS ++ + Sbjct: 71 LAVLLRAGLPLDRALKVLIDMAVQPQMQFLLNDLLKAVKGGKALSIAMQSHEKIFGS--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G LSE L L L +N KA ++ A ++ + Sbjct: 128 --FYISMVRSGEASGQLSEVLDRLVEYL---ENAKANRDSVVSALIYPAILLVVAVLSIV 182 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F P L D Sbjct: 183 LMLGFVVPQ-FESLFED 198 >gi|212637455|ref|YP_002313980.1| type IV pilus biogenesis protein PilC [Shewanella piezotolerans WP3] gi|212558939|gb|ACJ31393.1| Type IV pilus biogenesis protein PilC [Shewanella piezotolerans WP3] Length = 421 Score = 37.0 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ + ++ P +R ++ G+ LSE++ + E+ Sbjct: 88 VATMLAAGVPIVTTLELLGKGHEKPKMRELLATIVNDVQSGIPLSEALR--PHRLYFDEL 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 146 Y---VDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKK 182 >gi|291526749|emb|CBK92335.1| Bacterial type II secretion system protein F domain [Eubacterium rectale M104/1] Length = 142 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 11/117 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRVIETQHLGLSLSESISRM 72 + + +G+ V A I + D P E G++ ++ + Sbjct: 1 MAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVTEREISDGVTGRKAYAGF 60 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + L +I G + E L S D + + A K Sbjct: 61 AERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERRLLALKLGEEAGTKM 117 >gi|217975015|ref|YP_002359766.1| type II secretion system protein [Shewanella baltica OS223] gi|217500150|gb|ACK48343.1| type II secretion system protein [Shewanella baltica OS223] Length = 423 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ + ++ +R ++ G+ LS+++ RY V Sbjct: 91 VATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYV 150 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A ++ S Sbjct: 151 DLVA-----AGEHSGSLDLVFDRVATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 202 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + + Sbjct: 203 LLLLFVVPQFEEIF 216 >gi|15605299|ref|NP_220085.1| general secretion pathway protein F [Chlamydia trachomatis D/UW-3/CX] gi|3329011|gb|AAC68172.1| Gen. Secretion Protein F [Chlamydia trachomatis D/UW-3/CX] Length = 391 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPVILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 179 IGVIPTLKETFEDM 192 >gi|166154785|ref|YP_001654903.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu] gi|166155660|ref|YP_001653915.1| general secretion pathway protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336060|ref|ZP_07224304.1| general secretion pathway protein F [Chlamydia trachomatis L2tet1] gi|165930773|emb|CAP04270.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu] gi|165931648|emb|CAP07224.1| general secretion pathway protein F [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 391 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LALLLRSGISLYDALTSLRDQYQGHALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 179 IGVIPTLKETFEDM 192 >gi|76789307|ref|YP_328393.1| general secretion pathway protein F [Chlamydia trachomatis A/HAR-13] gi|237804921|ref|YP_002889075.1| general secretion pathway protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|255311389|ref|ZP_05353959.1| general secretion pathway protein F [Chlamydia trachomatis 6276] gi|255317690|ref|ZP_05358936.1| general secretion pathway protein F [Chlamydia trachomatis 6276s] gi|255348951|ref|ZP_05380958.1| general secretion pathway protein F [Chlamydia trachomatis 70] gi|255503490|ref|ZP_05381880.1| general secretion pathway protein F [Chlamydia trachomatis 70s] gi|76167837|gb|AAX50845.1| general secretion pathway protein F [Chlamydia trachomatis A/HAR-13] gi|231273221|emb|CAX10134.1| general secretion pathway protein F [Chlamydia trachomatis B/TZ1A828/OT] gi|296437032|gb|ADH19202.1| general secretion pathway protein F [Chlamydia trachomatis G/11222] Length = 391 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 179 IGVIPTLKETFEDM 192 >gi|21230136|ref|NP_636053.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769873|ref|YP_244635.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. 8004] gi|83303434|sp|P31744|GSPF_XANCP RecName: Full=General secretion pathway protein F gi|21111668|gb|AAM39977.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575205|gb|AAY50615.1| general secretion pathway protein F [Xanthomonas campestris pv. campestris str. 8004] Length = 405 Score = 36.6 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R + +T Sbjct: 54 LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSRRVIADIRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + +K K Sbjct: 112 VRGGAPLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus DSM 2162] Length = 580 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 10/179 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLG 62 R + +FP + V +GL A I+ S+ + F + LG Sbjct: 98 RASSIDGEFPFLSSYLSTMVMSGLSPYIAFERILKGSTIFKRTSELAQRFILLNR--ILG 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + P V + + GG++ + L SR+L + + K+ A Sbjct: 156 RDPLTAFDELAKRTPSSRVKETLSGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIAD 215 Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAAFMLIGIMV 178 + A++ + L T++YF + G+ + G +L G+++ Sbjct: 216 RLGGLLEAYLAMILLTMISFTVLYFVTTGFAGVVPFGLSSEGMFFFLYIVMPLLSGVII 274 >gi|71902056|ref|ZP_00684097.1| type II secretion system protein [Xylella fastidiosa Ann-1] gi|71728184|gb|EAO30374.1| type II secretion system protein [Xylella fastidiosa Ann-1] Length = 405 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 7/159 (4%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + + AG P+ A++++ + V + G LS ++ R Sbjct: 73 QQLAALLGAGQPLDRALSILTDLPDNEKSRLIIGDVCDIVRGGTPLSIALER-----QHG 127 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S ++ + GGN+ E L L+ L + ++AKV + +++G Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + V L + GV A IG Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225 >gi|332531030|ref|ZP_08406949.1| general secretion pathway protein F [Hylemonella gracilis ATCC 19624] gi|332039511|gb|EGI75918.1| general secretion pathway protein F [Hylemonella gracilis ATCC 19624] Length = 412 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESI 69 + V AGLP+ A+A + S + ++ + + G + + ++ Sbjct: 70 QLAVWTRQLAGLVAAGLPLERALASLAQDLSQDSGSPEQQRLIAQLRDEVNGGSTFARAL 129 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++ R + + GG L + L L+ L ++ ++AK+ ++ Sbjct: 130 AQHPRTFDDS-----YVAVVSAGEQGGQLGQVLDRLADELDGQEVLRAKLMGAALYPLIV 184 Query: 130 AWIIGSLPFCVSTLV 144 + + + T V Sbjct: 185 SGFSCVIVAFLLTYV 199 >gi|237802999|ref|YP_002888193.1| general secretion pathway protein F [Chlamydia trachomatis B/Jali20/OT] gi|231274233|emb|CAX11027.1| general secretion pathway protein F [Chlamydia trachomatis B/Jali20/OT] Length = 391 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 179 IGVIPTLKETFEDM 192 >gi|223040652|ref|ZP_03610922.1| type II secretion system protein [Campylobacter rectus RM3267] gi|222878110|gb|EEF13221.1| type II secretion system protein [Campylobacter rectus RM3267] Length = 416 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 15/137 (10%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 I VRAG+P++DA+ + + + + G+SL+E+ + Sbjct: 285 IFTELVRAGIPIADALETATLTVENQDIHDKLATIRLAVSRGVSLTEAFRD-TQLYESML 343 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + S + GG + L ++ K + + S+++ + + Sbjct: 344 IQMLS-----AGEKGGAIDAMLEKITDYY--------KAKFSDLVDNISSYVEPIMLLFM 390 Query: 141 STLVYFTSPGYMNVLIN 157 + +V + G + + Sbjct: 391 AGMVILLALGIFMPMWD 407 >gi|119503099|ref|ZP_01625184.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2080] gi|119461445|gb|EAW42535.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2080] Length = 396 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 12/138 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80 + +RAGLP+ A+ V++ +R+ +++ G SLS ++ P E Sbjct: 66 LSVLLRAGLPLDRALKVLIDMDGQPRMRAVLADLLKAVKGGKSLSLALQ------PYDEI 119 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 F + + G LS L L L K + + A ++ V Sbjct: 120 FGPFYLSMVRAGEASGQLSAVLERLVEHLESAKATRDSI---VSALIYPAILLVVAVISV 176 Query: 141 STLVYFTSPGYMNVLIND 158 ++ F P L ND Sbjct: 177 VVMLGFVVPQ-FETLFND 193 >gi|148259903|ref|YP_001234030.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|146401584|gb|ABQ30111.1| type II secretion system protein [Acidiphilium cryptum JF-5] Length = 406 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 13/164 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGL + A+ G ++ P VR+ + + G +L ++ Sbjct: 67 DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAW 131 R P F + + G L+ L +L+ +L ++++ A + L+ A + Sbjct: 127 PRSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 G++ F ++ ++ P ++ + + G L + IG Sbjct: 182 ATGAIVFLLTNVL----PEFVPIFAEN--GVPLPATTRLLLTIG 219 >gi|77918004|ref|YP_355819.1| general secretory pathway protein F [Pelobacter carbinolicus DSM 2380] gi|77544087|gb|ABA87649.1| general secretory pathway protein F [Pelobacter carbinolicus DSM 2380] Length = 408 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 12/165 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 + +AG+P+ A+ + + P+ +E V++ G LS ++ R + P Sbjct: 72 FCRQMYSLTKAGVPLLRALRGMTESACKPIMAETLLAVLDDLESGHDLSSALRRHSKVFP 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWIIGSL 136 +I V + G L ++ ++ ++R+++ + + ++++ ++ Sbjct: 132 ----PLLVNMIQV-GESSGRLDDSFNEVATYLIREKQTADQ----IKAALRYPSFVLVAI 182 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ + F P L + L + V Sbjct: 183 SIAIAIITLFVIPA-FEKLFKSQGAQLPLPTRIILGISNFAVSWW 226 >gi|311695301|gb|ADP98174.1| type IV pilus biogenesis protein PilC [marine bacterium HP15] Length = 406 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + E I G S + ++ + R+ Sbjct: 75 LATMMKAGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAGALRKHPRH-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + G L + L ++ L + +K KV+ Sbjct: 130 NDLYCSLVDSGEKAGALEQMLDRIATYLEKSELLKKKVKK 169 >gi|289525615|emb|CBJ15093.1| general secretion pathway protein F [Chlamydia trachomatis Sweden2] gi|296435176|gb|ADH17354.1| general secretion pathway protein F [Chlamydia trachomatis E/150] gi|296438896|gb|ADH21049.1| general secretion pathway protein F [Chlamydia trachomatis E/11023] Length = 391 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V + Sbjct: 179 IGVIPILKETFEDM 192 >gi|104781569|ref|YP_608067.1| type II secretion pathway protein F [Pseudomonas entomophila L48] gi|95110556|emb|CAK15264.1| putative type II secretion pathway protein F [Pseudomonas entomophila L48] Length = 396 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + + AGLP+ DA+ + ++S P R ++ + G SLS++++R + P Sbjct: 67 LATLLNAGLPLIDALESLAEKASAGTP-RKTLELLVRQLYEGRSLSQALARQPQVFPS-- 123 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + S+ G L +ALA R R ++ + + Sbjct: 124 ---LYVALVQSSERTGALGDALARYIGY-RQRLDLVRQKLVGAS 163 >gi|89074489|ref|ZP_01160966.1| putative general secretion pathway protein F [Photobacterium sp. SKA34] gi|89049777|gb|EAR55327.1| putative general secretion pathway protein F [Photobacterium sp. SKA34] Length = 408 Score = 36.6 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+A +P+ + + + Q+ P +++ V G +L++S++ Sbjct: 77 LATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEYPHI-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K+Q + + S+ V+ Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P ++ + G L + + V Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|229164942|ref|ZP_04292757.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803] gi|228618526|gb|EEK75537.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803] Length = 276 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IK+ + P L +++ ++ +AV + +R + Sbjct: 119 LKIRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 177 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 178 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233 >gi|218133637|ref|ZP_03462441.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC 43243] gi|217991012|gb|EEC57018.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC 43243] Length = 403 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 11/162 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 + D ++AG+ V +A++++ Q+ + +++ + V G +LS ++ Sbjct: 63 VRDLSVFCRQFSSIIKAGVNVINALSMMSEQTENKKLKAAIKNVQSNVEKGETLSSAMRS 122 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P VS + G S +L + + AK+ + +A Sbjct: 123 EGDIFPSLLVSMVAA---------GEASGSLETAIERMAIQFEKDAKISGMVKKAMIYPI 173 Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172 I+ + V ++ F P +M++ + V M Sbjct: 174 ILIVVMIGVVIAMMMFVIPNFMDMFEGLDAEMPFMTVMVINM 215 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 13/128 (10%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I+ + AG+P+ A+ + G + + F+ ++ G++L + + + + Sbjct: 275 IMSTLLSAGMPMISAIEIAAGTMDNVL---FKDALQKVRSGVALG---MGFSQQIGVTRL 328 Query: 82 --SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++ + + G N+ + L N++ + + ++ S+ A II + Sbjct: 329 FPAMLVHMVGIGEETG-NIEDMLTNVANYYDE----EVELATQSVTALMEPMIIIVMAVV 383 Query: 140 VSTLVYFT 147 V LV Sbjct: 384 VGALVLAI 391 >gi|188993089|ref|YP_001905099.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris str. B100] gi|73916935|gb|AAC27376.3| XpsF [Xanthomonas campestris] gi|167734849|emb|CAP53060.1| Type II secretory pathway component [Xanthomonas campestris pv. campestris] Length = 405 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%) Query: 1 MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58 ++ L+ R F + + AG P+ A+++++ D R + +T Sbjct: 54 LRMLL--RKKPFDNASLVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSRRVIADIRDT 111 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G LS ++ R S + + GG++ + L L+ L + +K K Sbjct: 112 VRGGAPLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 V + ++G + V L Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203 >gi|531742|emb|CAA56981.1| xcpS [Pseudomonas putida] Length = 400 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 9/172 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 + + AG+P+ DA+A + Q P + S + + GL L Sbjct: 53 RHQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGL 112 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + S++R S + + G L++ L L+ L + + K + + Sbjct: 113 ARSLAR-----QGASFSGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALI- 166 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 167 --YPCVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITALLIGLSQGLV 216 >gi|239905315|ref|YP_002952054.1| putative general secretion pathway protein F [Desulfovibrio magneticus RS-1] gi|239795179|dbj|BAH74168.1| putative general secretion pathway protein F [Desulfovibrio magneticus RS-1] Length = 409 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%) Query: 29 AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 +G+PV + ++VG + + EFRR+ E G L+ +SR + P T+ Sbjct: 286 SGVPVLTTIDILVGTIGNAAIAKEFRRIQEMIKSGQGLAGPLSRAKYFTP-----MVVTM 340 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 ++V + G NL E L+ +S + A+V + S + L ++ +V F Sbjct: 341 VAVGEESG-NLDEMLSAISE------HYDAEVA--FAVKRLSDALGPVLIVGLAGVVGFF 391 Query: 148 SPGYMNVLIN 157 + + + Sbjct: 392 ALAIFMPMWD 401 >gi|228912547|ref|ZP_04076212.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL 200] gi|228847117|gb|EEM92106.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL 200] Length = 288 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 12/120 (10%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 3 HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +L+K+R + ++ + P L +++ ++ +AV + + + Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLHPYVSTLTAE 187 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|190572738|ref|YP_001970583.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] gi|190010660|emb|CAQ44269.1| putative general secretion pathway protein F [Stenotrophomonas maltophilia K279a] Length = 406 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 + L+++R + + + AG P+ A+++++G D R + + Sbjct: 56 RTLLRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ R S + + GG+L E L L+ L + ++ KV Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVI 169 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++G + V L Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204 >gi|254284153|ref|ZP_04959121.1| type II secretion system protein [gamma proteobacterium NOR51-B] gi|219680356|gb|EED36705.1| type II secretion system protein [gamma proteobacterium NOR51-B] Length = 397 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + A+ V++ +R+ V+++ G +LS ++ Sbjct: 67 LSTLLRAGLSLDRALKVLIDMDGQPRMRAVISEVLKSVKGGKALSIALQPFE-----ASF 121 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G LS L L L K + V SA I ++ V+ Sbjct: 122 GTFYLSMVRAGEASGQLSSVLDRLVEHLESAKTTRDSV--------ISALIYPAILLVVA 173 Query: 142 TLVYFTSPGYMNVLIND 158 + G++ Sbjct: 174 VISIVVMLGFVVPQFET 190 >gi|314974319|gb|EFT18415.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1] gi|314980647|gb|EFT24741.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2] gi|315090038|gb|EFT62014.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1] gi|315096613|gb|EFT68589.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1] gi|327325749|gb|EGE67544.1| membrane associated protein [Propionibacterium acnes HL096PA2] gi|327330163|gb|EGE71913.1| membrane associated protein [Propionibacterium acnes HL096PA3] gi|327333257|gb|EGE74978.1| membrane associated protein [Propionibacterium acnes HL097PA1] gi|327443398|gb|EGE90052.1| hypothetical protein HMPREF9570_02379 [Propionibacterium acnes HL043PA1] gi|327447490|gb|EGE94144.1| hypothetical protein HMPREF9571_01040 [Propionibacterium acnes HL043PA2] gi|327456789|gb|EGF03444.1| hypothetical protein HMPREF9581_00006 [Propionibacterium acnes HL087PA3] gi|328760173|gb|EGF73748.1| membrane associated protein [Propionibacterium acnes HL099PA1] Length = 297 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|150401576|ref|YP_001325342.1| hypothetical protein Maeo_1153 [Methanococcus aeolicus Nankai-3] gi|150014279|gb|ABR56730.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3] Length = 342 Score = 36.6 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESISRM 72 A+ +V + +G + + + I S V EF+ VI G + ES+ R Sbjct: 171 QIMMAMLHMVSMLNSGASLQECIKNIGSNSDYGIVSFEFKNVIYDIVRGGYNFKESLERA 230 Query: 73 VRYMPLQEV-SFFSTVISVQSQLGGNLSEALANL-SRILRD 111 + + ++ +I+ +Q G L L NL I+R+ Sbjct: 231 KNRTGISLMEKLYAQLITASNQGKGQL--LLQNLYGEIIRE 269 >gi|90581087|ref|ZP_01236887.1| putative general secretion pathway protein F [Vibrio angustum S14] gi|90437783|gb|EAS62974.1| putative general secretion pathway protein F [Vibrio angustum S14] Length = 408 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+A +P+ + + + Q+ P +++ V G +L++S++ Sbjct: 77 LATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEYPHI-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ +R+ M++K+Q + + S+ V+ Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P ++ + G L + + V Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223 >gi|309389143|gb|ADO77023.1| Type II secretion system F domain protein [Halanaerobium praevalens DSM 2228] Length = 343 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 10/151 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +++GL ++ + ++ QS +E +++ GL+L+ ++ Sbjct: 19 LQSGLSLNRTLLIMAQQSRSEREAEIYSNLLKNIESGLTLASALKEEKI------FKDLF 72 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 I + G+L L +L + + +K +++ +I +L + Sbjct: 73 IEIVRAGEKSGSLVSVLTSLEEYYKSKNELKKEIKKACF---YPLTVIITLILAAFFIFK 129 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 F P ++++ L + +G Sbjct: 130 FILPVFVDLFAEFNGQLPFLTRILLSLSLGF 160 >gi|217977096|ref|YP_002361243.1| type II secretion system protein [Methylocella silvestris BL2] gi|217502472|gb|ACK49881.1| type II secretion system protein [Methylocella silvestris BL2] Length = 404 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R G +++A+ ++ S +R ++ G S ++S++ P Sbjct: 74 LALLLRTGARINEALELVATDSDVGRLRPTIAKLTAAILGGESFADSLAHHPALFP---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ V + GNL L ++ + ++ KV + A+++ + + Sbjct: 130 PMYVALVRV-GETSGNLVPVLEAIAAERTRAEALRRKV---GDALRYPAFVLSAAGAVLI 185 Query: 142 TLVYFTSPGYMNVL 155 + F P + VL Sbjct: 186 FFLTFVLPQFGAVL 199 >gi|34557761|ref|NP_907576.1| putative ferrous iron transport protein B [Wolinella succinogenes DSM 1740] gi|34483478|emb|CAE10476.1| PUTATIVE FERROUS IRON TRANSPORT PROTEIN B [Wolinella succinogenes] Length = 759 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F A + V ++ G A+ + EF + + +G++ Sbjct: 484 KERQEEFDRSIQGAYERFVDALE-GNSYQAALNTPQRVMA---LIEFSENYKQKRMGITT 539 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E++SR+ E FF V+ + ++ L +I+ RK + +V+ Sbjct: 540 QEALSRLDEKYAQIEPLFFKI---VRDRSDKEAAKVERALRQIISARKTLFREVK 591 >gi|295089940|emb|CBK76047.1| Type II secretory pathway, component PulF [Clostridium cf. saccharolyticum K10] Length = 348 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 I +++ +P+ + ++V+ +S P E + + +G SE++S Sbjct: 12 LSGFCMQISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC 71 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + T ++V + G L E + +LSR + ++ A +I Sbjct: 72 ------FPAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIV 122 Query: 135 SLPFCVSTLVYFTSP 149 L + L P Sbjct: 123 MLLVILFILFTRVMP 137 >gi|257453562|ref|ZP_05618852.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60] gi|257449020|gb|EEV23973.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60] Length = 407 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77 + + ++AG+P++ + ++ +P E V G + + ++ + RY Sbjct: 72 FVRQLATMMKAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFD 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLS 106 F +++ + G L L ++ Sbjct: 132 ----DLFCSLVE-AGEQSGALETMLERVA 155 >gi|313831096|gb|EFS68810.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1] Length = 297 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 +D++V A DA+ S P+ + R+V+ L + + R+ + Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 L E++ ++ +Q++ G +L ++ LRD ++ + ++ ++ + W I Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279 Query: 138 FCVSTLV 144 + L+ Sbjct: 280 SVMLILL 286 >gi|302897922|ref|XP_003047741.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728672|gb|EEU42028.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 202 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Query: 26 SVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESISRMVRYMP--L 78 +V +G+ + A+ + ++ +F +I+ L+E+++++ + +P Sbjct: 6 AVASGIAIVQALEAVRKTVGLIREIPEIQGDFDGLIKEL----DLTEAMAKVAQQIPSNS 61 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSR 107 E F + +++ L++ L + +R Sbjct: 62 PEQDFLAKATEQVNEVTSELNKVLESCAR 90 >gi|255507168|ref|ZP_05382807.1| general secretion pathway protein F [Chlamydia trachomatis D(s)2923] Length = 391 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVYFTSPGYMNVL 155 V T + Sbjct: 179 IGVIPTLKETFEDM 192 >gi|330981426|gb|EGH79529.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 400 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 9/142 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + AG P+ ++ +++ Q ++ R+ E G LS ++ Sbjct: 63 ALVSFTQQLATLLGAGQPLERSLGILLKQPGQSQTKALIERIREQVKAGKPLSVALEEEG 122 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 S + + GG L L LS L + ++ +V + A+++ Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174 Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155 + ++ L+ + P ++ + Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196 >gi|171060549|ref|YP_001792898.1| type II secretion system protein [Leptothrix cholodnii SP-6] gi|170777994|gb|ACB36133.1| type II secretion system protein [Leptothrix cholodnii SP-6] Length = 397 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V + AGL + +AV ++ ++ + + H G S+++ P Sbjct: 68 LVSLLGAGLSLVEAVDLLAEKETGRSAAAVLTELRTDLHRGQRFSDALEHHPAVFP---- 123 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G + +SR L + + + + + ++G + Sbjct: 124 PMFVATVRASERTG----DIQEAVSRFLAYHQQLDRIRRRVVSASVYPLMLMGVGLLVTA 179 Query: 142 TLVYFTSPGY----------MNVLINDPRGHMLLGVAAAFMLIGIM 177 ++ F P + + L G L A A + +G++ Sbjct: 180 FMLLFVVPKFSRIYEEIGGQLPFLTRLLIGWGQLLEAHAALTLGVL 225 >gi|309806178|ref|ZP_07700194.1| type II secretion system F domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167397|gb|EFO69560.1| type II secretion system F domain protein [Lactobacillus iners LactinV 03V1-b] Length = 331 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + F + + ++ IG Sbjct: 125 MVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFIGCF 166 >gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1] gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 290 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 48/140 (34%), Gaps = 2/140 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + AK + P + I + ++A V + + + E + S Sbjct: 141 KRAKIESELPRFVATITQELKASRDVLGMLENYKKNAGEEFAVELDILTADMRS-SSYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R + +S + + + G + + L+ ++ + + K QA+ + K Sbjct: 200 ALTRFEARINSPMLSDLTRGL-IGVLRGDDGAMYFQMLAHDMKQLELQRLKAQAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + L + T + Sbjct: 259 IRVFSFIMLMCFLLTYIAVI 278 >gi|289674983|ref|ZP_06495873.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 405 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I + +P +++ + + G S + ++ + Y Sbjct: 75 MATMMKAGVPLLQSFDIISEGAENPNMQTLVNSLKQEVSAGNSFATALRQKPEY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +KAK++ +A +I + Sbjct: 130 DDLYCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIK--KAMTYPTAVLIVAAIVTGI 187 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + +V L V + + Sbjct: 188 LLIKVV-PQFQSVFSSFGAALPTFTLMVVGLSEFVQQWWL 226 >gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain protein [Clostridium botulinum Ba4 str. 657] Length = 164 Score = 36.6 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 59/152 (38%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K I K FL ++ P L+ +++ ++ G+PV + I + Sbjct: 5 IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADLINLCVTK 64 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKA 117 + G+ +++++ + + +I + NL + L L + + +R N+K Sbjct: 65 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKT 124 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + + + + + + + ++ P Sbjct: 125 E---HADKLDNALFFPMLIGYFIPLIIMILVP 153 >gi|322434575|ref|YP_004216787.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321162302|gb|ADW68007.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 399 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 20/170 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 ++AGLP+ ++ ++ + R++ V G S+S + Sbjct: 73 IKAGLPILGSLDLLARRQKVLNFRAQLEDVATRVKTGESISSAFE------AQGGFPIVY 126 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 T + + GNL E L R + K++A + ++ L + T V Sbjct: 127 TTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPSLLIVMVIGLFIFLITFVV 186 Query: 146 FTSPGYMNVLIND---------PRGHML----LGVAAAFMLIGIMVMRLM 182 + L G L VAA L+G ++ R M Sbjct: 187 PRFAQLYDQLNTHLPALTVFLLDLGRNAQTYGLYVAAVVGLVGYLIYRWM 236 >gi|163803453|ref|ZP_02197326.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4] gi|159172754|gb|EDP57602.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4] Length = 407 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ A+ ++ ++S + G +S+++ + Sbjct: 76 ITTMLMTGVPIVQALKLVAKSHKKAEMKSTLMSITRAVEAGTPISKAMG-----TTSKHF 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 T + + GNL + L+ + ++A+V + + I+ +L C Sbjct: 131 DPLYTNLIATGEQSGNLPQVFDRLATYREKSEQLRARVAKALIYP--TMVILVALGVCYL 188 Query: 142 TLVYFTSPGY 151 L P + Sbjct: 189 MLTQVI-PEF 197 >gi|29828880|ref|NP_823514.1| hypothetical protein SAV_2338 [Streptomyces avermitilis MA-4680] gi|29605985|dbj|BAC70049.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 701 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%) Query: 16 FPNALD-IIVRSVRAGL----PVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESI 69 +A++ +++RS RAG P++D VA + + DP E RR + L+++ Sbjct: 348 LRDAVEHLLLRSPRAGQRRTVPLADFVAALARDTGVDPGTPELRRWAADLDAEIDLNDAF 407 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 R + V+S+ S +G + E+L Sbjct: 408 VRQADRTRDTRLRL---VVSLHSAVGDDWPESL 437 >gi|171915471|ref|ZP_02930941.1| General secretion pathway protein F [Verrucomicrobium spinosum DSM 4136] Length = 434 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 18/151 (11%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67 +F F L+ + + GLP+ A+ ++ + + +R+ V G SLS Sbjct: 295 RTRFEVQF---LETLGNLLHNGLPLHRALELVRKATVNQFLRTRLGDVEAAVADGGSLSR 351 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + P ++ V Q G LS AL + + + Sbjct: 352 ALEKANVVRP-----LVIDMVRVGEQTG-ELSTALQKAG--------TRFESHLSKAMDR 397 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158 A+A + + ++++V + +NV+ Sbjct: 398 ATALLQPVIILVMASMVGTMAWMMINVVWAT 428 >gi|168701600|ref|ZP_02733877.1| general secretion pathway protein F-putative pilus protein [Gemmata obscuriglobus UQM 2246] Length = 344 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 9/139 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 ++ S+ AGL P+R+ + + G SL +++ Sbjct: 12 ALVEWCRVLRFSLSAGLDPLKIFKQQAKSGPRPLRALAGDLAKRLAKGSSLEDALEPHRD 71 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASA 130 P F +++V Q G L + L + L ++ +A++ + A+ Sbjct: 72 KFP----PLFVELVAVGEQTG-RLDDTFQELEQYFAAALTTQRRFRAQMAYPVINYVAAV 126 Query: 131 WIIGSLPFCVSTLVYFTSP 149 I+ +L F + L P Sbjct: 127 GIVTALIFILGMLGSKMDP 145 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 10/109 (9%) Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 R + G L E++ P F + + G SE + L+ LR+ Sbjct: 244 ERAVAVVKRGSELVEALE--ASRAPFP--QDFIGALMTGEETGNT-SEVMDRLAEHLRED 298 Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + + A+ + ++I + + F ++ + ++ G Sbjct: 299 AD-----RKMKGAAQMTGYMIYGMVALMIIFFIFRIATAISGVYSEALG 342 >gi|330828058|ref|YP_004391010.1| type IV pilus assembly protein tapC [Aeromonas veronii B565] gi|328803194|gb|AEB48393.1| Type IV pilus assembly protein tapC [Aeromonas veronii B565] Length = 413 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ ++ +I +R ++ G +SE++ R PL Sbjct: 82 ITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEAL----RRHPLY-F 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ +I S Sbjct: 137 DDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPTMVILVAIVVTS 193 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + ++ Sbjct: 194 ILLLFVIPQFEDIF 207 >gi|74316771|ref|YP_314511.1| type II secretory pathway component PulF [Thiobacillus denitrificans ATCC 25259] gi|74056266|gb|AAZ96706.1| type II secretory pathway component PulF [Thiobacillus denitrificans ATCC 25259] Length = 407 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 15/147 (10%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 + S+++G+PV+ A++V+ + + + S +E G+ ESI Sbjct: 268 LRSTLGRFARTLALSMKSGIPVAQALSVVAEVTDNAWIGSR----VEQMRNGIERGESIL 323 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R ++ + + + + G++ E + ++ + + + +++ L SA Sbjct: 324 RTAQHAGV--FNAVVLQMIAVGEETGSIDELMQEVAEMYE--REVDYEIKTL------SA 373 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157 I + + LV + G + + Sbjct: 374 RIEPIIIAAMGGLVLVLALGVFLPMWD 400 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 9/126 (7%) Query: 27 VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAG+P+ A+A ++ +++ + E+ G LS ++ + R S F Sbjct: 80 LRAGVPILRALAGLIESTANLAFARVIASLKESLEAGRDLSTAMRQHPRV-----FSPFY 134 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + G L E + L + +A+++ + +++ ++ V+ + Sbjct: 135 VAMVRVGEATGRLDEIFLRMFEHLEFERETRARIKEAL---RYPTFVLIAMVVAVAVINV 191 Query: 146 FTSPGY 151 F P + Sbjct: 192 FVIPAF 197 >gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1] gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1] Length = 400 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 16/163 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ A+ I QS D + + + + G +L+E+ + R Sbjct: 70 LSTLVNAALPLESALKAISRQSEDKKLSALVSDIRDKVVEGHTLNEAFGQFPRI-----F 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + + G L + L L+ R+ MK+++ QA+ + I + + Sbjct: 125 DKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPITLTVVAIAVIGILL 184 Query: 141 STLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMV 178 +V P ++ + L+ V+ G+ + Sbjct: 185 VAVV----PQVIDQFTHMKQQLPITTRTLIAVSDFLQAWGLYI 223 >gi|255316491|ref|ZP_05358074.1| hypothetical protein CdifQCD-7_19182 [Clostridium difficile QCD-76w55] Length = 298 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 67/152 (44%), Gaps = 10/152 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +K++ K L FP+ ++++ + + + + A+ + V +E+ ++ + Sbjct: 146 LKNAVKEKKLKILSGFPDFINVVQGFLVSDMTLVKAIESSI----PYVGTEWSKLAQEFV 201 Query: 61 L---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + S + I + + + EV ++I + S+ G N+ E +N ++ + D + Sbjct: 202 IDSKTNSQEKCIEIIYEKIDIFEVRELWSLIKLNSEQGINIKECFSNQAKKITD---LNM 258 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 ++ + + + P + L+ + P Sbjct: 259 ELIHKKINTRQIMATLVQAPLLLLLLIAISLP 290 >gi|114330526|ref|YP_746748.1| type II secretion system protein [Nitrosomonas eutropha C91] gi|114307540|gb|ABI58783.1| type II secretion system protein [Nitrosomonas eutropha C91] Length = 394 Score = 36.6 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 6/153 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74 N ++ + AGL + + + +V + D VR ++++ H G++LS ++ + Sbjct: 58 LSNFSQELLALLTAGLNLVEGIETLVEKEEDSAVRELLQQILVRLHEGMTLSRALESHPQ 117 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 P + I Q G +L+EAL ++ K+ S+ + G Sbjct: 118 TFP----PLYVATIRASEQTG-DLAEALTRYLTYQSQMDLVRKKLVGASIYPVLLLVLGG 172 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 + + V + D +L + Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMSTDLPWMSMLLI 205 >gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3] gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3] Length = 294 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + R + LD++ + GL + A+ +E R ++ Sbjct: 137 LHRRASARRQETRLAVAAYLDLVRILLVGGLSLHTALQTAADAGRGWAFTEIRAALQWAR 196 Query: 61 LGLSLSES-ISRMVRYMPLQEVSFFSTVISVQSQ 93 ++ ++R+ +P+ E + +S + Sbjct: 197 ARHVPPDAGLNRLAVRVPVAEFAELRLTVSSALR 230 >gi|326202875|ref|ZP_08192742.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782] gi|325986952|gb|EGD47781.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782] Length = 319 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 68/183 (37%), Gaps = 12/183 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ IK+R P+ +D S + + A+ ++ + RV ++ Sbjct: 148 LRYSIKQRI-------PSFIDSFRSSFVSQNRIKPALQECCSNANKHLARIMLRVSDS-- 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +++S+ + + + F T++ + GG L L L++ + N++ K Sbjct: 199 --SDINDSLCAVRGRINDIWFNIFVTLLINYRENGGELINQLYKLNKTITRYNNIEKKKN 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + V L+ G M + N + + + + LI + V+ Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGANMRLYYNTAQAAGKIAIYSLSALIIVRVL 316 Query: 180 RLM 182 R + Sbjct: 317 RRL 319 >gi|218289535|ref|ZP_03493763.1| hypothetical protein AaLAA1DRAFT_1349 [Alicyclobacillus acidocaldarius LAA1] gi|218240403|gb|EED07585.1| hypothetical protein AaLAA1DRAFT_1349 [Alicyclobacillus acidocaldarius LAA1] Length = 326 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 32 PVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTV 87 + A+ V P+R R+ + + ++ + R V+ + + ++ Sbjct: 164 SMLHALQSTVEHLPPSPIRRAVARLTDRLTDYTTPGDARRALHRFVKELGTSWAAQLASD 223 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-PFCVSTLVYF 146 I G N+ +LA L + ++ ++ + ++ + + + P + F Sbjct: 224 IEHALLDGVNVEASLALLHKEFQEIEDARKSQNLARIDTLLISCVPFLMWPVMMVLFYLF 283 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 S +P G + +G ++ Sbjct: 284 VSRNIFQYQFANPTGFTWFLLTL-LATLGSFII 315 >gi|332523369|ref|ZP_08399621.1| putative magnesium and cobalt transport protein CorA [Streptococcus porcinus str. Jelinkova 176] gi|332314633|gb|EGJ27618.1| putative magnesium and cobalt transport protein CorA [Streptococcus porcinus str. Jelinkova 176] Length = 305 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 5/126 (3%) Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + L L+E+ + + L+ FS ++ L +R+ Sbjct: 180 SQLLDLSQELAENENNFFQEENLRFFHLFSARVARLQST----VLMLRETIIQIREMAKS 235 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +++ A + +P + Y + YM L P G+ L+ + A + I Sbjct: 236 QLEMRQNKNMAILTTVTTCCMPLTILVGWYGMNFKYMPEL-ASPLGYPLVIIFAVTIFIA 294 Query: 176 IMVMRL 181 ++ Sbjct: 295 AILYSK 300 >gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM 44928] Length = 297 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 49/137 (35%), Gaps = 14/137 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES----ISRMVR 74 LD ++ G + A+ V PV FR + ++ E + + + Sbjct: 161 FLDQAATTLAGGAGIEQAL-VAAADGHGPV---FRAIRDSITDSRLAREPAWPHLDALGK 216 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + ++E+ + ++ G + ++A +R +R+R+ + + Sbjct: 217 RLGIRELCELAAACTLAGAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERL------ 270 Query: 135 SLPFCVSTLVYFTSPGY 151 ++P + + + Y Sbjct: 271 AMPGGLLGMSFVCFLTY 287 >gi|258515887|ref|YP_003192109.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779592|gb|ACV63486.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 401 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 8/147 (5%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +G+P+ A+ + + + +++ G SLS ++S R+ P Sbjct: 73 ASLINSGIPILKALILSMQTNKKSFNVVLDQLVLDLKAGSSLSGAMSNYPRFFP----KI 128 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 F +I+ + GG L + L L+ + ++ KV+A ++ + C+ + Sbjct: 129 FIGMIA-AGESGGVLGQVLDRLAIHFENVSSLSDKVKAALS---YPVLVVATAILCLVLM 184 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAA 170 + P + +L + + V Sbjct: 185 MTMVLPVFEGMLQDVNASLPFITVVVV 211 >gi|226325873|ref|ZP_03801391.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758] gi|225205997|gb|EEG88351.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758] Length = 55 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 6/55 (10%), Positives = 21/55 (38%) Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + +P + + + P +M L + G + + + + + ++ +V Sbjct: 1 MSVIPLGIIGYMRLSFPEFMAGLYGNLPGAVFMSICLGAYIAAWRLGCKIVEIEV 55 >gi|295115046|emb|CBL35893.1| Type II secretory pathway, component PulF [butyrate-producing bacterium SM4/1] Length = 348 Score = 36.2 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74 I +++ +P+ + ++V+ +S P E + + +G SE++S Sbjct: 12 LSGFCMQISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC 71 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + T ++V + G L E + +LSR + ++ A +I Sbjct: 72 ------FPAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIV 122 Query: 135 SLPFCVSTLVYFTSP 149 L + L P Sbjct: 123 MLLVILFILFTRVMP 137 >gi|194364325|ref|YP_002026935.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194347129|gb|ACF50252.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 406 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 ++L ++R + + + AG P+ A+++++G D R + + Sbjct: 56 RNLFRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS ++ R S + + GG+L + L L+ L + ++ KV Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHDTLQRLADYLERSRALQGKVI 169 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++G + V L Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204 >gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 395 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV----IETQHL 61 ++ + + + AGLPV A+ +I ++ F+R+ +E Sbjct: 48 HRQRRVPEEHLIRFFFDLSDLLSAGLPVDRALGLISSNQTN---KVFQRISKGLLEEVQG 104 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G LS ++++ S + + G L L L+ L R+ + Q+ Sbjct: 105 GSDLSGALAKYRHVFG-----NLSDHMVRAGEASGTLGPILRRLAEYLEQRRTFR---QS 156 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 L A + + + L+ + P + + Sbjct: 157 LVSSMIYPAILFATSLISMVVLLVYVIPNFAKIF 190 >gi|229113405|ref|ZP_04242856.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15] gi|228670019|gb|EEL25411.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15] Length = 281 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K IK+ + P L +++ ++ +AV + +R + Sbjct: 124 LKIRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 183 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 238 >gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1] gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1] Length = 420 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 12/130 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSE 51 K+ + R + L D+ + +V + AGL V A I +S P E Sbjct: 259 KNQARVRERQLLFDYSEVVSKLVVYMGAGLTVRGAWERITAGYKDGVKQGKRSVRPAYEE 318 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRIL 109 + GLS ++ S R +Q S ++ + G L AL + Sbjct: 319 MVKTAAQLGSGLSEGKAYSEFGRRCGVQVYIKLSALLEQSQKNGSRQLRPALELEMVSAF 378 Query: 110 RDRKNMKAKV 119 RKN+ K+ Sbjct: 379 EQRKNLAKKL 388 >gi|146304853|ref|YP_001192169.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348] gi|145703103|gb|ABP96245.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348] Length = 527 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 14/176 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIET 58 +L+ KR L DFP L I + G + ++ I P F V + Sbjct: 329 SYLVIKRDESILADFPTILREIGDFTKLGYGIRASIQRINFDELGLHKPTVKFFDNVKKQ 388 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +G ++ + ++V F ++++ + GG L LS ++ + K Sbjct: 389 IGMGNNI------YFGSIQNEQVKFIVELLNILDRKGGEGVRVLQELSDMIYSITLSRTK 442 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + + + S + I +L V TS ++ + G + LG + L+ Sbjct: 443 L-----QRELSTFNILALITPVLFWFSTTSIETISSFSSSTLGLLNLGYSLTLSLL 493 >gi|327479617|gb|AEA82927.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri DSM 4166] Length = 405 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I +P +R + + G S + ++ + +Y Sbjct: 75 MATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +KAK++ ++ + Sbjct: 130 DDLYCNLVDSGEQSGALETLLDRVATYKEKTEALKAKIKK---AMNYPIAVLMVAIIVSA 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + V N G L A M+IG+ Sbjct: 187 ILLIKVVPQFQEVFAN--FGAEL--PAFTLMVIGL 217 >gi|309802084|ref|ZP_07696194.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] gi|308221285|gb|EFO77587.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022] Length = 145 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P L+++ ++R G + A+ V+ V + G+ ++ Sbjct: 13 MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 65 Query: 76 MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132 P +++ V + G + L L +R ++ LS I Sbjct: 66 WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLS--------I 117 Query: 133 IGSLPFCVSTLVYFTS 148 LP + L F + Sbjct: 118 RLLLPTGLCFLPAFIA 133 >gi|296278289|pdb|2WHN|A Chain A, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis Protein gi|296278290|pdb|2WHN|B Chain B, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis Protein Length = 116 Score = 36.2 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AGL + A+A++ Q+ + R ++V G++ SE++S+ Sbjct: 22 LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 75 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S + + G L L L+ L ++ K+++ Sbjct: 76 SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRS 115 >gi|242238116|ref|YP_002986297.1| type IV pilin biogenesis protein [Dickeya dadantii Ech703] gi|242130173|gb|ACS84475.1| type II secretion system protein [Dickeya dadantii Ech703] Length = 400 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I ++AGLP+ DA+A+I R + G + S++I P Sbjct: 65 LRQIASLLQAGLPLPDALALIGEHHEKAGWRCLLSDIRHQILQGRAFSDAIGDYPDIFPA 124 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLP 137 S + G L+ L L + + ++ + M+A + ++I + Sbjct: 125 ICGSLLAV---------GELTGKLDECCARLAVYQETQQQLASNVMKAIRYPVFVIVAGM 175 Query: 138 FCVSTLVYFTSPGY 151 + P + Sbjct: 176 LVGLLMTALVLPEF 189 >gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium yellowstonense SS-5] Length = 574 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P +S + +P + + + +P L V AF LI ++R ++N D+ Sbjct: 181 PPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIA--IIRRLLNIDI 229 >gi|163857178|ref|YP_001631476.1| general secretion pathway protein F [Bordetella petrii DSM 12804] gi|163260906|emb|CAP43208.1| general secretion pathway protein F [Bordetella petrii] Length = 400 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + A LP+ A+ + Q+ V V + G L+++++ ++ Sbjct: 70 LASLLAARLPLDAALNATLEQAESRHVAGALAGVRDEVRAGYRLADALA-----TRPRDF 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L++ + L+ + +R ++ KV Sbjct: 125 PEIYRALVAAGEESGDLAQVMEKLAGYIEERNALRGKVMT 164 >gi|297619916|ref|YP_003708021.1| Type II secretion system F domain-containing protein [Methanococcus voltae A3] gi|297378893|gb|ADI37048.1| Type II secretion system F domain protein [Methanococcus voltae A3] Length = 354 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 3/101 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLG-LSLSES 68 + L I+ + +G V +++ I + EFR +I+ + G S + Sbjct: 179 EIKIQILMTLLHIISMLNSGASVQESIKNIADNPEYGIPSYEFRNIIKDINNGGYSFEGA 238 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 + R + + + + + S GG L NL + + Sbjct: 239 LERARTRTKVNLMKELYSQLIISSSKGGT-QLLLENLYKDI 278 >gi|91200636|emb|CAJ73686.1| similar to general secretory system type II protein, membrane component [Candidatus Kuenenia stuttgartiensis] Length = 417 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 16/152 (10%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 K F D AGLP+ ++ ++ Q ++ +VIE G Sbjct: 75 KSKHLTLFTRQLSTLQD-------AGLPIIRSLQILAAQLKKGMLKKTVLKVIENIEGGS 127 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + S +++R R + ++ ++ G+L L L+ R+ M+ ++ + Sbjct: 128 TFSGALARHPRVFD----KLYVNIVK-AGEISGSLDIILRRLADF---REKMERLIRKII 179 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ + L+ F P + + Sbjct: 180 TAMIYPSVVVVVAAAILIGLMIFVVPNFAKIF 211 >gi|300088313|ref|YP_003758835.1| type II secretion system F domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528046|gb|ADJ26514.1| Type II secretion system F domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 401 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G + A+ ++ Q+++ R+ V G SLS ++S+ + Sbjct: 72 LALLLESGTDIVTALELLQEQTTNKTFRTTLGHVANDIRGGSSLSGAMSKHPKVFS---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F V+S + GGNL L N++ L+ + K+++ A + + + Sbjct: 128 PLFHRVLS-AGEQGGNLEVVLRNMADFLQRMNETRKKIKSALTYPIVVAVVAVIVVAVLM 186 Query: 142 TLVYFTSPGYMNVL 155 V T L Sbjct: 187 IFVLPTFTDLYRQL 200 >gi|261402229|ref|YP_003246453.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369222|gb|ACX71971.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 559 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 9/129 (6%) Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL+E+ + + P E + F ++ G L E L I+ D K Sbjct: 126 GRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLMKEQDIVMDDYAAFYKRML 185 Query: 122 LSM----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 S+ E SA + S LV F P + + L A ++ ++ Sbjct: 186 YSLDLYKELYVSAMTSVAFFLAFSILVPFLLPFNFVFMAT-----IALFAFFAIEILIVI 240 Query: 178 VMRLMINFD 186 V+R + FD Sbjct: 241 VIRNRLPFD 249 >gi|289578260|ref|YP_003476887.1| type II secretion system F domain protein [Thermoanaerobacter italicus Ab9] gi|289527973|gb|ADD02325.1| Type II secretion system F domain protein [Thermoanaerobacter italicus Ab9] Length = 402 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 6/135 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+A + Q + +++ R V E G SLS+++ + P Sbjct: 68 FCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSLSDAMKKQGDVFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + ++ G L + + ++ + KV++ +++ + Sbjct: 128 VLLYNMVEVG-----EVSGTLDKVMNEMADHYEKENELNQKVKSALTYPVIVSFVAVLVV 182 Query: 138 FCVSTLVYFTSPGYM 152 + T V Sbjct: 183 IFLLTNVLPIFVDLF 197 Score = 34.3 bits (78), Expect = 8.2, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 15/136 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ A+ V+ + + SE R+ E GL LSE + +M + P Sbjct: 275 LGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP---- 330 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +ISV + G+L L + +V + ++ + + + ++ Sbjct: 331 -MVIQMISV-GESSGSLDSILNKAADF------YDGEVD--TAVSQMTTLLEPLIIVMLA 380 Query: 142 TLVYFTSPGYMNVLIN 157 T+V F + L Sbjct: 381 TVVGFIVVSIIMPLFQ 396 >gi|308047938|ref|YP_003911504.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799] gi|307630128|gb|ADN74430.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799] Length = 407 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 11/132 (8%) Query: 19 ALDIIVRSVRA----GLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73 AL +I R + GLP+ + + + QS P ++S V G L+ES++ Sbjct: 70 ALALITRQLSTLVAGGLPLEECIKAVAEQSEQPRLKSMLMAVRAKVVEGYGLAESMAEYP 129 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWI 132 + E+ + + G+L L L+ R+ + AK+ QAL + Sbjct: 130 QVFD--ELY---VAMVASGEKSGHLEVVLERLADYTERRQELNAKLTQALVYPIILTVVA 184 Query: 133 IGSLPFCVSTLV 144 I + F ++++V Sbjct: 185 ISVVVFLLTSVV 196 >gi|251772571|gb|EES53136.1| putative general secretion pathway protein F [Leptospirillum ferrodiazotrophum] Length = 407 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ DA+ ++ Q D P+ RV + G LS ++ + + Sbjct: 79 MAILVGAGVPIVDALGAVLDQGPDTPMARVASRVRDLVKEGRPLSAAMGEIPAVFSGIYL 138 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + G L L L+ ++ + + KV Sbjct: 139 NMV-----RAGEESGTLEIMLDRLADLMEKQVGTRRKV 171 >gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7] gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 634 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 45/129 (34%), Gaps = 1/129 (0%) Query: 53 RRVIETQH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + +++ + LG S+ ++I + +P + + + G + E + + + + Sbjct: 178 KYIVKRINFLGESVEKAIDESTKIVPSKLYNDLMVTYITAIRTGAPVFETMQSKIKDILK 237 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++A A ++ ++ +S + L P G + Sbjct: 238 NMELQASKAADNLSGVGEGYVTWLASGFISFFLILILEAVFPQLHVLPIGILGAFAVLGI 297 Query: 172 MLIGIMVMR 180 ++ I+ + Sbjct: 298 PIVNILFVW 306 Score = 33.9 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L I RAGL + + +++ RRV +LG+ + ++ + + Sbjct: 415 FLRAIGEGSRAGLSPEAVIKNLKDSKELGKLQNILRRVYAYINLGIPIKDAFRKASDIII 474 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 T ++ ++G E++ L+ L + ++ + Sbjct: 475 DFSTKIAFTSLADMIEIGSLTPESVETLADQLDAQIRIRRE 515 >gi|289209345|ref|YP_003461411.1| type II secretion system F domain protein [Thioalkalivibrio sp. K90mix] gi|288944976|gb|ADC72675.1| Type II secretion system F domain protein [Thioalkalivibrio sp. K90mix] Length = 403 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 6/104 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + +++G+P+ A ++ + P +R ++ G + + ++++ +Y Sbjct: 69 FLRQMTTMLQSGVPLVQAFEIVGRGNEKPAMRDLVLKLKADVEGGETFAAALAKQPKY-- 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L L ++ + +KAK++ Sbjct: 127 ---FDDLVVNLVEAGEQAGTLETLLDKVATYKEKTEALKAKIRK 167 >gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str. Loch Maree] gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium botulinum A3 str. Loch Maree] Length = 250 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 60/152 (39%), Gaps = 6/152 (3%) Query: 1 MKHLIKKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +K I K FL ++ P L+ +++ ++ G+PV + I + + Sbjct: 91 IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYSILLYISNNKKGNTANLINLCVTK 150 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKA 117 + G+ +++++ + + +I + NL + L L + + +R N+K Sbjct: 151 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKT 210 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + + + + + + + + ++ P Sbjct: 211 E---HADKLDNALFFPMLIGYFIPLIIMILVP 239 >gi|146281442|ref|YP_001171595.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501] gi|145569647|gb|ABP78753.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501] Length = 405 Score = 36.2 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I +P +R + + G S + ++ + +Y Sbjct: 75 MATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L ++ + +KAK++ ++ + Sbjct: 130 DDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKK---AMNYPIAVVLVAIIVSA 186 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ P + V N G L A M+IG+ Sbjct: 187 ILLIKVVPQFQEVFAN--FGAEL--PAFTLMVIGL 217 >gi|291613153|ref|YP_003523310.1| type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] gi|291583265|gb|ADE10923.1| Type II secretion system F domain protein [Sideroxydans lithotrophicus ES-1] Length = 400 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 VRAG+P+ + + + + R ++E+ G LS++++ + Sbjct: 72 VRAGVPLLECLGDLRDTMEEATFREIIASMVESIESGKKLSQAMAEHPN-----AFDKIT 126 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 ++ + G L E A+L+ L+ + M ++ + + + ++ ++ F + + Sbjct: 127 VSLTRAGEDSGRLVEVFAHLTESLKWQDEMASQTKTMMIYPAFVGTVVLAITFFLMIYL 185 >gi|163751667|ref|ZP_02158887.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99] gi|161328493|gb|EDP99648.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99] Length = 423 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+++ Q Sbjct: 93 IATMLSAGVPLVTTIEMLGRSHEKAKMRELLGTIVNDVQAGIPLSDAL-----RPHRQYF 147 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 148 DDLYVDLVAAGEHSGSLDAVFDRVATYREKAEALKSKIKK 187 >gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827] gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827] Length = 185 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 D+ ++R+GLPV A+ ++ + +V + LG + + Sbjct: 45 ALAETWDLFAAALRSGLPVPSALHAVLPGTPPGPAERLGQVRDLLALGADPATA 98 >gi|224826461|ref|ZP_03699563.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224601562|gb|EEG07743.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 396 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 15/142 (10%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 + ++ + G PV A+ ++ G +R + + G S+S + Sbjct: 256 QRMRIYQLARFYRMLGMLLTGGTPVVQALGMVSGLLQASLREQLLQAARDIREGRSISLA 315 Query: 69 ISRMVRYMPLQEVSFFSTVISVQS----QLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +S + +T ++++ + G + + ++ + + Sbjct: 316 MSS----------NGLTTSVALRMLRVGERTGQMGGMMERIASFYEEEMAQAVERFTRLF 365 Query: 125 EAKASAWIIGSLPFCVSTLVYF 146 E A IG + V L+Y Sbjct: 366 EPALMA-FIGLVIGGVVILMYL 386 >gi|167041769|gb|ABZ06512.1| putative bacterial type II secretion system protein F domain protein [uncultured marine microorganism HF4000_010L19] Length = 410 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 7/128 (5%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 +RAGLPV + + +++ Q+ P +++I + L ++S+ P + Sbjct: 78 ATMLRAGLPVLNTLNMLIEQTKAP---GMKKIITSIRKDLESGNALSKCFEKHP-KVFDT 133 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + G L L + L R+ +K++++ ++ + Sbjct: 134 VVVNLIKAGEASGKLDTFLQKIVISLEKREKIKSQIK---SALFYPGVLLSVAIIVTIFM 190 Query: 144 VYFTSPGY 151 + P + Sbjct: 191 LMKVVPVF 198 >gi|42523100|ref|NP_968480.1| general secretion pathway protein F [Bdellovibrio bacteriovorus HD100] gi|39575305|emb|CAE79473.1| general secretion pathway protein F [Bdellovibrio bacteriovorus HD100] Length = 405 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++A +P+ DA+ + Q +P + + G +L +++ + Sbjct: 74 LATLIKANIPLVDALTAVSEQVENPTLAEALADCKNMVNEGSTLHKAMLKYPNV-----F 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + ++ G+L L L+ + +++AKV A++ G + F Sbjct: 129 TTIYVSMVEAGEMSGSLDVILMRLAEFTEAQADLRAKVSSAMTYPVIMLVVTFGLMGFLF 188 Query: 141 STLV 144 L+ Sbjct: 189 IFLI 192 >gi|260596530|ref|YP_003209101.1| type IV pilin biogenesis protein [Cronobacter turicensis z3032] gi|260215707|emb|CBA28060.1| Protein transport protein hofC [Cronobacter turicensis z3032] Length = 406 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 65/168 (38%), Gaps = 16/168 (9%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A+ + ++AG+ ++ +A++ Q R+ F ++ + G++ SE++ + P Sbjct: 69 AVRQLAALLQAGVSLTQGLAMLSSQHPVAQWRALFAQLAKQLGRGVAFSETLRQWPDIFP 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSL 136 + + G L+ L + L ++ + K++ ++A + A+I Sbjct: 129 ---------PLYISLMRTGELTGKLDMCCQQLAQQQEDQQKLRKQVIKALRYPAFIFTVA 179 Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR---GHMLLGVAAAFMLIGIMVM 179 + F P + + N P ++ ++ M + + Sbjct: 180 LLLTLGMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEGLMQYAVWWL 227 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 11/120 (9%) Query: 29 AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 AG+P+ +++ + + P+ R RRV E GL L ++ + T Sbjct: 282 AGIPLLQSLSSVEETLASPLWRQAVRRVKEGIASGLPLWRALEQ----------ETVFTA 331 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +Q G + +L + L + +A ++ A ++ + V TLV Sbjct: 332 LCIQLVRTGEETGSLDLMLEKLAGWHLAQTSERAQTLAATLEPLMMMVIGLIVGTLVVAM 391 >gi|297544540|ref|YP_003676842.1| Type II secretion system F domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842315|gb|ADH60831.1| Type II secretion system F domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 403 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 6/135 (4%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + AG+P+ A+A + Q + +++ R V E G SLS+++ + P Sbjct: 68 FCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSLSDAMKKQGDVFP 127 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + ++ G L + + ++ + KV++ +++ + Sbjct: 128 VLLYNMVEVG-----EVSGTLDKVMNEMADHYEKENELNQKVKSALTYPVIVSFVAVLVV 182 Query: 138 FCVSTLVYFTSPGYM 152 + T V Sbjct: 183 IFLLTNVLPIFVDLF 197 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 15/136 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ A+ V+ + + SE R+ E GL LSE + +M + P Sbjct: 275 LGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP---- 330 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +ISV + G+L L + +V + ++ + + + ++ Sbjct: 331 -MVIQMISV-GESSGSLDSILNKAADF------YDGEVD--TAVSQMTTLLEPLIIVMLA 380 Query: 142 TLVYFTSPGYMNVLIN 157 +V F + L Sbjct: 381 IVVGFIVVSIIMPLFE 396 >gi|13541845|ref|NP_111533.1| hypothetical protein TVN1014 [Thermoplasma volcanium GSS1] gi|14325281|dbj|BAB60185.1| TVG1068999 [Thermoplasma volcanium GSS1] Length = 245 Score = 36.2 bits (83), Expect = 2.2, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 3/140 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++ K P+ L + G+ + + + +I+ + P+ + R G + Sbjct: 45 LRRNEEKRNMMVPSFLRDLSSFSSYGMSMYNILHLILSEDLGPLNEDVRNARAILDNGNT 104 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E + + +++ + V+ + G L LS + +R + + K + Sbjct: 105 IEEVSAYLRSR-NSRDLDIVAEVMKNADRAG-RPGTTLQFLSTYMNERMSQR-KNATQTA 161 Query: 125 EAKASAWIIGSLPFCVSTLV 144 E I + F + +V Sbjct: 162 ENYVGLIIASFMIFLLVMIV 181 >gi|90416867|ref|ZP_01224796.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2207] gi|90331214|gb|EAS46458.1| general secretion pathway protein F [marine gamma proteobacterium HTCC2207] Length = 402 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64 +R A+ + D L + +GLP+ DA+ + + Q+ + R + G S Sbjct: 56 RREARVNNFDLSLLLQQQAILIESGLPLEDALRMTIEQAETEKQRRMLQSWRSEIIEGRS 115 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S+++ R P + ISV + G +L + L ++ L + + S Sbjct: 116 FSDAL----RRSPYKIPDSIVAGISVGEESG-HLHKVLMRIAEDLESSAENRKTI---SR 167 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 A +I + V+ ++ + P + ++ R L+ Sbjct: 168 AMIYPATLISTSIIVVAIMMVWVVPKITAIFMSSNRELPLITRIIV 213 >gi|32470735|ref|NP_863728.1| hypothetical protein RB127 [Rhodopirellula baltica SH 1] gi|32442880|emb|CAD71399.1| hypothetical protein-transmembrane prediction [Rhodopirellula baltica SH 1] Length = 350 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + L+ + +G + +A + + + V G S S +++ + Sbjct: 21 ESLAMLLEEVSAMAASGRSLVSGLAGLNDVALGRLGRAAEFVRARVKHGQSPSVAMASLS 80 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + + ++ G + + +R++R R++ + +V ++ + + Sbjct: 81 LPYQTP----IRIAMQIMAETGSTAA--IHETARLIRQREDQRRQVWLAAINPILNMLVA 134 Query: 134 GSLPFCVSTLVYFT 147 + F V + + Sbjct: 135 AVVAFFVLPWILIS 148 >gi|114564936|ref|YP_752450.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] gi|114336229|gb|ABI73611.1| type II secretion system protein [Shewanella frigidimarina NCIMB 400] Length = 419 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ VR ++ G+ LS+++ RY V Sbjct: 89 IATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRRYFDDLYV 148 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 149 DLVA-----AGEHSGSLDAVFDRIATYREKAEQLKSKIKK 183 >gi|4680725|gb|AAA91205.2| VvpC [Vibrio vulnificus] Length = 409 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ ++ ++ ++S V + G LS+++ V Sbjct: 77 LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTLLSKALRSASPQFDGIYV 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL + L+ + ++AKV A I + V+ Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYSCMVVLVA 183 Query: 142 TLVYFT 147 V + Sbjct: 184 LGVSYL 189 >gi|88858666|ref|ZP_01133307.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas tunicata D2] gi|88818892|gb|EAR28706.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) [Pseudoalteromonas tunicata D2] Length = 411 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AG+P+ A+ + + + + G +LS +++ + Sbjct: 75 FCRQMYSLLKAGIPIIRAIVGLAETTTHKRFAEALTDLTKQLEQGRNLSSAMASHKKI-- 132 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + I V + G L +A L+ + + +++ + ++I +L Sbjct: 133 ---FNRLMVSIVVVGESTGRLEDAFLQLATYFEREQETRKRIK---SAMRYPTFVILALV 186 Query: 138 FCVSTLVYFTSPGYMNVL 155 + L F P + N+ Sbjct: 187 AAMFILNIFVIPTFANMF 204 >gi|87309116|ref|ZP_01091253.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM 3645] gi|87288107|gb|EAQ80004.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM 3645] Length = 466 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 + AGLP+ ++ ++ QS +++ V E G LSE++S+ Sbjct: 71 RQLTTFTRQLAILQNAGLPILRSLKILEKQSKPGRLKNSLMDVCEDIESGAGLSEAMSKC 130 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + +I + GG L L L+ + +++K KV+ A + Sbjct: 131 PKCFN----RLYVNMIK-AGEAGGALEVILLRLADFMERDEDLKRKVKG---AMIYPAVV 182 Query: 133 IGSLPFCVSTLVYFTSPGY 151 I ++ ++ P + Sbjct: 183 ITVAVGILTFIMIKIVPVF 201 >gi|296123622|ref|YP_003631400.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296015962|gb|ADG69201.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 362 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 8/133 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +RAG+P+ + SS + R+ E G +L +I+ E Sbjct: 21 LALLIRAGIPLEIGFQQLGRGSSSDLARLAERIGERLQQGQALDLAIAS----ENTPEAR 76 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 ++T++ + + G L E L +++ + ++ + + A ++ + Sbjct: 77 LYATIVQLGIRSG-RLPEMLESMAHLGDQMSAVREEFHRV---AIYPTIVVVLTYLLICG 132 Query: 143 LVYFTSPGYMNVL 155 L + P ++ L Sbjct: 133 LAIWFIPRWLLTL 145 >gi|238797693|ref|ZP_04641188.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] gi|238718445|gb|EEQ10266.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969] Length = 365 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + ++AGLP+ +++ ++ + P R + + + G SLSE+++ R P Sbjct: 34 LATLLQAGLPLVNSLQLLAKEMDALPWRCLLQEINQQVSQGQSLSEAMAHYPRIFP 89 >gi|295837423|ref|ZP_06824356.1| translation initiation factor IF-2 [Streptomyces sp. SPB74] gi|197696060|gb|EDY42993.1| translation initiation factor IF-2 [Streptomyces sp. SPB74] Length = 304 Score = 36.2 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 14/43 (32%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 V AG +A + G PV R V LG + Sbjct: 174 CVAAGAGPVEAAEAVGGSLDGPVGERLRHVAAEIRLGGEPERA 216 >gi|325981148|ref|YP_004293550.1| Type II secretion system F domain [Nitrosomonas sp. AL212] gi|325530667|gb|ADZ25388.1| Type II secretion system F domain [Nitrosomonas sp. AL212] Length = 407 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61 +I+K F +++G+P+ A +I S+ + + Sbjct: 63 RIIEKDITLFTRQL-------ATMMKSGVPLLQAFDIIGKGHSNRALSKLLMDIKADVET 115 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L+++ + PL + + G L L L+ + +K K+++ Sbjct: 116 GSNLTDAFRK----YPLY-FDALYCNLVGAGEAAGILDTILDRLATYKEKIQAIKGKIKS 170 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + + V D L +A + + Sbjct: 171 ALFYPISIIVVAFVITAIIMIFVIPAFKDLFEGFGADLPAPTLFVMAISDFFVAYWW 227 >gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 431 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 9/128 (7%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVR------SEFRRVIETQHLGLSLSES 68 P L+ V + AG+ V A I + + E + G S E Sbjct: 286 PEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKEC 345 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127 + F ++S + G L++ L + + + AK + K Sbjct: 346 YEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTK 405 Query: 128 ASAWIIGS 135 A + Sbjct: 406 LLAPMFFM 413 >gi|134096982|ref|YP_001102643.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|291006273|ref|ZP_06564246.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] gi|133909605|emb|CAL99717.1| type II secretion system protein [Saccharopolyspora erythraea NRRL 2338] Length = 143 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 D++ +RAGLPV + + + V LG + +R+ +E Sbjct: 7 DLLAAGMRAGLPVPVILRAVAAEFDGAPAGVLDEVARLLALGADAVAAWEPALRHPDTEE 66 Query: 81 V 81 + Sbjct: 67 L 67 >gi|170723339|ref|YP_001751027.1| general secretion pathway protein F [Pseudomonas putida W619] gi|169761342|gb|ACA74658.1| general secretion pathway protein F [Pseudomonas putida W619] Length = 400 Score = 36.2 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 9/172 (5%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 +R + AG+P+ DA+A + Q P + + + GL L Sbjct: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHGVLVALRGSLAEGLGL 112 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + S++ + + + G L++ L L+ L + + K + + Sbjct: 113 ARSLA----RQGAP-FTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALI- 166 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 ++G V L+ F P + + L+ + G++ Sbjct: 167 --YPCVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216 >gi|220913901|ref|YP_002489210.1| hypothetical protein Achl_3160 [Arthrobacter chlorophenolicus A6] gi|219860779|gb|ACL41121.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 271 Score = 35.8 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%) Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 + + G L++ L + L + A Q KA+ ++ LP L Sbjct: 163 LAACFDIAEASGCPLADVLTRFAAQLEVESDADAARQTALAGPKATVTLLTWLPLMGLGL 222 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +L+ P G L AA + G + ++ Sbjct: 223 GMALGVDPLAMLLGTPLGLAALLGGAALTVAGRLWSARLV 262 >gi|118579254|ref|YP_900504.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118501964|gb|ABK98446.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 414 Score = 35.8 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 24 VRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 +RAG + A+ + +R +++ + G S S +++ + + Sbjct: 86 AMMLRAGYTLVTALDASSEMTAKLRLRRTIKKMCDEIRKGGSFSGTLAGEKKI-----FT 140 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + + GNL + L L+ + K++K + L +++ V Sbjct: 141 PMVSNLIASGEKSGNLDDILDRLADSIERSKDIKRQ---LVAAMFYPLFVLLVSIGVVIF 197 Query: 143 LVYFTSPGYMNVL 155 LV P + L Sbjct: 198 LVLGVIPRFATFL 210 >gi|89093855|ref|ZP_01166801.1| general secretion pathway protein F [Oceanospirillum sp. MED92] gi|89081985|gb|EAR61211.1| general secretion pathway protein F [Oceanospirillum sp. MED92] Length = 407 Score = 35.8 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +AG+P++ A+ + +P+ E + G LS ++++ + Sbjct: 77 MYSLTKAGVPITRAMRGLANTVQNPLLVETLSDLANDLEKGHELSSALAKHPKVFS---- 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++I V + G L +A ++ L + +V+ + + +++ ++ ++ Sbjct: 133 ELYVSMIHV-GENTGQLDDAFRQMASYLELERQTVKQVKQAT---RYPMFVMIAIAAAIT 188 Query: 142 TLVYFTSPGYMNVL 155 + P + N+ Sbjct: 189 LINIVVIPQFKNIF 202 >gi|15669091|ref|NP_247896.1| flagellar assembly protein J [Methanocaldococcus jannaschii DSM 2661] gi|3024920|sp|Q58311|FLAJ_METJA RecName: Full=Flagella accessory protein J gi|1591576|gb|AAB98904.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 562 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 10/150 (6%) Query: 42 GQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100 + + E ++ G SL+E+ + + P E + F ++ G L E Sbjct: 108 REELGELAKESEKLYVLTDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKE 167 Query: 101 ALANLSRILRDRKNMKAKVQALSM----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 L I+ D K S+ E SA + S LV F P + Sbjct: 168 FLIKEQDIVMDDYAAFYKRMLYSLDMYKELYVSAMTSIAFFLAFSILVPFLLPYNFVFMA 227 Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + L A L+ ++V+R + FD Sbjct: 228 T-----IALFAFFAVELLIVVVIRNRLPFD 252 >gi|269955134|ref|YP_003324923.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] gi|269303815|gb|ACZ29365.1| type II secretion system protein [Xylanimonas cellulosilytica DSM 15894] Length = 183 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L+++ ++RAG V A+ + + RV LG + + + + + + Sbjct: 48 VLELLGAALRAGAGVPRAIETVAQAVGGADGAALARVASALRLGAAWTVAWEGVPPRLDV 107 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 + + G EAL L Sbjct: 108 -----VARALRPAWDEGAAPGEALTAAGEEL 133 >gi|194468354|ref|ZP_03074340.1| type II secretion system protein [Lactobacillus reuteri 100-23] gi|194453207|gb|EDX42105.1| type II secretion system protein [Lactobacillus reuteri 100-23] Length = 344 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 N ++ + G + +A+ I + V + G S ++S+ Sbjct: 20 QQQANFFLLLADLLSVGFSIREALGFI-KTVKPKLGPWVVSVDKRMQKGASFAQSLQ--- 75 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 P + F ++ ++ GNL++ L+ + +IL R++ + K+ L + ++ Sbjct: 76 ---PEVKADLFYQLLL--AEKHGNLTKTLSEVGKILAAREHQRKKLFNLL---QYPLILL 127 Query: 134 GSLPFCVSTLVYFTSPG 150 G L + L+ F P Sbjct: 128 GMLGVVICGLILFVFPE 144 >gi|152976636|ref|YP_001376153.1| type II secretion system protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025388|gb|ABS23158.1| type II secretion system protein [Bacillus cytotoxicus NVH 391-98] Length = 344 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + G + A+ + Q S R + + + E G SL ++ +++ + + F++ Sbjct: 23 LEKGYSLLQALEFLQFQLSSQKRLQLQHMTEELKNGQSLHDAFHQLMFHPDILSYLFYA- 81 Query: 87 VISVQSQLGGNLSEALANLSRIL-RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 Q G++S AL S +L R K+ K ++ L S ++IG L L+ Sbjct: 82 ------QKHGDISFALRQGSLLLQRKNKHQKEMIKVLRYPIFLSVFLIGILAVFHFILL 134 >gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM 4028] gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM 4028] Length = 401 Score = 35.8 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 13/100 (13%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F ++ AG+P+ A+ ++ Q+ +P +R + V G SL E++ Sbjct: 67 FSRQFATMIN-------AGVPILQALQIMCEQTENPKLRRKLYAVRNDIEGGSSLYEALK 119 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + + + + GG L + L L+ + Sbjct: 120 KHPDI-----FDALYSNMVNAGETGGILDQVLIRLAEYIE 154 >gi|221069114|ref|ZP_03545219.1| general secretion pathway protein F [Comamonas testosteroni KF-1] gi|220714137|gb|EED69505.1| general secretion pathway protein F [Comamonas testosteroni KF-1] Length = 407 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 8/113 (7%) Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G S + ++ + R E S + + G+L L NL+ L R+ +++ Sbjct: 113 EVNAGSSFARALEQHPR-----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQS 167 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 K+ S+ A + V LV + P V R L V Sbjct: 168 KLIGASL---YPAIVTLVAIVIVVFLVSYVVPQVAGVFAGTKRALPFLTVVML 217 >gi|311030866|ref|ZP_07708956.1| comG operon protein 2 [Bacillus sp. m3-13] Length = 326 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G + +A+ ++ + IE G S+ + + + + + FFS Sbjct: 8 GYSLLEALELMSIHFEAEKKRSLLEAIEELKKGYSVHQVLESLHFNQDILSLLFFS---- 63 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 Q GNL +A + +L ++ + K+ ++ + ++ + + + P Sbjct: 64 ---QKHGNLGQAFRSGGALLERKRFYRDKIFSIL---RYPIMLLFLVTIMLVFVQLVLLP 117 Query: 150 GY----------MNVLINDPRGHML-LGVAAAFMLIGIMVMRLMINF 185 + ++ +I+ ++ + + + ++GI L Sbjct: 118 QFHLLFSQMNISLSPIISVFFFLVVQIPILLLWCVLGIFAAYLFYKI 164 >gi|89897405|ref|YP_520892.1| hypothetical protein DSY4659 [Desulfitobacterium hafniense Y51] gi|89336853|dbj|BAE86448.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 316 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 17/151 (11%), Positives = 50/151 (33%), Gaps = 2/151 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K++ + + P + I ++++A V + + E + S Sbjct: 164 LKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFARELDVLTADMRS-SS 222 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++R + +S + + G + + L+ + + + K A + Sbjct: 223 YEAALTRFEARLNSPMLSDVVRGL-IGVLRGDDSTVYFQMLAHDFKALELQRLKSLAQKI 281 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + L + T + + ++ L Sbjct: 282 PPKIRIFSFIMLMCFLLTYLAIIAMEILSSL 312 >gi|227540875|ref|ZP_03970924.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183407|gb|EEI64379.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 466 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSLSESISRMVRYMPLQEV 81 R+ GL +S A I+ +DP EF G++L ++ M ++V Sbjct: 194 SRASALGLDISRA--EIIDHLTDPRAEEFAAQFAELRKKKGVTLEQARETM------KDV 245 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S+F T++ Q G +S A + +R + ++ + S+ + ++ Sbjct: 246 SYFGTMLVHTGQADGMVSGAAHTTAHTIRPSFQI---IKTKPGTSVVSSIFLMAM 297 >gi|227541577|ref|ZP_03971626.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182545|gb|EEI63517.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 213 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFT 147 SV G L+ L ++ + DR+ K ++ + A I+ +LP + Sbjct: 114 SVAETYGVPLAGLLESVQATM-DRQLQHDKQTVAQLQGPITTAGILTALPVIGIIMGAAI 172 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L+ G ++L + G++ +I Sbjct: 173 GADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208 >gi|254427307|ref|ZP_05041014.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] gi|196193476|gb|EDX88435.1| Bacterial type II secretion system protein F domain [Alcanivorax sp. DG881] Length = 407 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 18/173 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ +P ++ ++ G + + ++ + PL Sbjct: 77 MATMMKAGVPLVQAFEIVADGLDNPSMKDVVLKIKADVEGGNNFAGALQKH----PLL-F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +K K++ K +I + Sbjct: 132 DDLYCSLVDAGEQSGALETMLDRVALYKEKSEALKQKIKK---AMKYPIAVICVAIIVTA 188 Query: 142 TLVYFTSPGYMNVLINDPRG-------HMLLGVAAAFMLIGIMVMRLMINFDV 187 L+ P + + D G ++G++ A ++M +I F + Sbjct: 189 ILLIKVVPTFKELF--DGFGAELPAFTQFVIGLSEALQANFFIIMVSLIVFGI 239 >gi|170721966|ref|YP_001749654.1| type II secretion system protein [Pseudomonas putida W619] gi|169759969|gb|ACA73285.1| type II secretion system protein [Pseudomonas putida W619] Length = 396 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 9/119 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65 +R F + + AGLP+ DA+ + ++ R ++ + G SL Sbjct: 53 RRQVAFDLLL--FSQELTTLLHAGLPLIDALESLAEKAPTAATRKVLAALVGQLYEGRSL 110 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S+++++ R P + S+ G L +AL R R ++ + + Sbjct: 111 SQALAQQPRIFPP-----LYVALVQSSERTGALGDALHRYIGY-RQRLDLVRQKLVGAS 163 >gi|171463464|ref|YP_001797577.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193002|gb|ACB43963.1| type II secretion system protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 140 Score = 35.8 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 14/119 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +R+GL + ++ ++ Q +P ++ ++ G SLS+S ++ + Sbjct: 2 LRSGLSILPSLEMVRDQVENPTLKETVNQIYIDVESGSSLSQSFTKHPDI-----FNAIY 56 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 + + G L L L +R ++ +Q SA + ++ V+T+V Sbjct: 57 INMVKAGESSGRLDIFLDKLVLSIRKTIKIRKSIQ--------SAMLYPAILLIVATVV 107 >gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM 771] gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM 771] Length = 289 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 51/152 (33%), Gaps = 2/152 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K++ + + P + I ++++A V + + E + Sbjct: 136 RLKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFAGELDVLTADMRS-S 194 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R + +S + + G + + L+ + + + K QA Sbjct: 195 SYEAALTRFEARLNSPMLSDVVRGL-IGVLRGDDSAVYFQMLAHDFKALELQRLKGQAQK 253 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + L + T + + ++ L Sbjct: 254 IPPKIRIFSFIMLMCFLLTYMAIIAMQILSSL 285 >gi|114561295|ref|YP_748808.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB 400] gi|114332588|gb|ABI69970.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB 400] Length = 410 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 9/146 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59 + +L KKR + + + I V AGLP+ +A+ + QS D + S V Sbjct: 59 LANLFKKRIS--VAELALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRV 116 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL++S++ + + G+L L L+ R+ +K+K+ Sbjct: 117 VEGYSLADSMAEFPHV-----FDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKL 171 Query: 120 -QALSMEAKASAWIIGSLPFCVSTLV 144 QA+ + IG + ++ +V Sbjct: 172 TQAMIYPIVLTVVAIGVIAVLLAAVV 197 >gi|309808611|ref|ZP_07702503.1| type II secretion system F domain protein [Lactobacillus iners LactinV 01V1-a] gi|308168085|gb|EFO70211.1| type II secretion system F domain protein [Lactobacillus iners LactinV 01V1-a] Length = 332 Score = 35.8 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 20 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 73 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 74 -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 125 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + F + + ++ IG Sbjct: 126 MVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFIGCF 167 >gi|227487256|ref|ZP_03917572.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092914|gb|EEI28226.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 213 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFT 147 SV G L+ L ++ + DR+ K ++ + A I+ +LP + Sbjct: 114 SVAETYGIPLAGLLESVQATM-DRQLQHDKQTVAQLQGPITTAGILTALPVIGIIMGAAI 172 Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + L+ G ++L + G++ +I Sbjct: 173 GADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208 >gi|330465240|ref|YP_004402983.1| type II secretion system F domain-containing protein [Verrucosispora maris AB-18-032] gi|328808211|gb|AEB42383.1| Type II secretion system F domain-containing protein [Verrucosispora maris AB-18-032] Length = 252 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 9/126 (7%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G PV +V + P+ + RRV T LG E+ + + + +T Sbjct: 128 GAPVERSVIAVADALGGPLADQLRRVGRTLQLGGLPQEAWAHLAE---VPGGQRIATAAV 184 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 + G L+ AL L+ LR +V + A+ S ++ LP + L F Sbjct: 185 RSASSGAALAGALVRLADDLRA-----DRVTTIEAAARRSG-VLIVLPLGLCFLPAFILA 238 Query: 150 GYMNVL 155 G + V+ Sbjct: 239 GLVPVI 244 >gi|229182303|ref|ZP_04309578.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W] gi|228601159|gb|EEK58705.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W] Length = 288 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K+ + P L +++ ++ +AV + +R + Sbjct: 131 LKNRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAELE 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + + + EV+ F+ + + + ++L + ++ + +K + Sbjct: 190 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245 >gi|226943335|ref|YP_002798408.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ] gi|226718262|gb|ACO77433.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ] Length = 405 Score = 35.8 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A +I P +R V + G + S+ + RY Sbjct: 75 MATMMKAGVPLLQAFDIISEGFDKPAMRKLVDEVKQEVAAGNGFAASLRKKPRY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +KA+++ A I+ ++ Sbjct: 130 DNLYCNLVESGEQSGALESLLERIATYKEKTEALKARIKKAMTYPI--AVILVAIAVSAI 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L+ P + +V N L + Sbjct: 188 LLIKVV-PQFQSVFANFGAELPALTLLVV 215 >gi|302768707|ref|XP_002967773.1| ATP-binding cassette transporter [Selaginella moellendorffii] gi|300164511|gb|EFJ31120.1| ATP-binding cassette transporter [Selaginella moellendorffii] Length = 622 Score = 35.8 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%) Query: 52 FRRVIETQHLGLSLSESISRMVRYM-PLQEVS-FFSTVISVQSQLGGNLSEALANLSRIL 109 R + G +L + + R + ++E FF+ + L+ +L L Sbjct: 372 LARTAQALGAGFALGSVFTHLGRNVVGVRERYGFFAFTL------TFLLTSTSESLPMFL 425 Query: 110 RDRKNMKAKVQALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 +R+ + + + + S+++I LPF + +T P Y V +N + Sbjct: 426 AERQIFERETSRGTY--RVSSYVIANTLMFLPFLFVFSLLYTVPAYFLVGLNHSIEAYVF 483 Query: 166 GVAAAFMLI 174 + +M++ Sbjct: 484 FLLDVWMVV 492 >gi|399800|sp|P31704|GSPF_ERWCH RecName: Full=General secretion pathway protein F; AltName: Full=Pectic enzymes secretion protein outF gi|148436|gb|AAA24833.1| secretory component [Erwinia chrysanthemi] gi|259984|gb|AAB24180.1| OutF=pectic enzyme secretion protein [Erwinia chrysanthemi, Peptide, 404 aa] Length = 404 Score = 35.8 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R+ + D + V A LP+ +A+ + QS P + + V G SL+ Sbjct: 61 RSHRIASDLALLTRQLATLVAA-LPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E++ + + G+L L L+ R M++++Q Sbjct: 120 EAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRHEMRSRIQ 168 >gi|226951870|ref|ZP_03822334.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244] gi|294649127|ref|ZP_06726569.1| general secretion pathway protein F [Acinetobacter haemolyticus ATCC 19194] gi|226837410|gb|EEH69793.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244] gi|292825010|gb|EFF83771.1| general secretion pathway protein F [Acinetobacter haemolyticus ATCC 19194] Length = 401 Score = 35.8 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V AG+P+ +A+ + QS V++ V G SL++ + + R E+ Sbjct: 73 LSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQGMQQSGR---FPEL 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140 + + G+L L LS +R M+ K+Q A I+ + F + Sbjct: 130 YIATVA---AGERSGHLDLILDQLSDYTENRFAMQKKIQG----AMIYPIILMLMSFAIV 182 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMRLMINF 185 L+ + P + + VA A ++IG + + L F Sbjct: 183 MGLMTYVVPEIVKTFEQSKEALPWITVALMKASAFIKQTWVAMLIIGFIAVILFTRF 239 >gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 249 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 2/137 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P AL++ + + G+ + + IV VR G SL ++++ Sbjct: 103 EEELPAALEVFISGLEVGMNKENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALTFA 162 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 F ++ + + ++ E L L + +R + +A +++ S + Sbjct: 163 ADKSLNDHFKRFVKAVTGEYESVKDMRENLEELLEEVEERNYNQKIERAGTLD--NSLFF 220 Query: 133 IGSLPFCVSTLVYFTSP 149 L + V LV F P Sbjct: 221 PIFLGYFVPILVMFALP 237 >gi|58337050|ref|YP_193635.1| competence protein [Lactobacillus acidophilus NCFM] gi|227903613|ref|ZP_04021418.1| competence protein [Lactobacillus acidophilus ATCC 4796] gi|58254367|gb|AAV42604.1| competence protein [Lactobacillus acidophilus NCFM] gi|227868500|gb|EEJ75921.1| competence protein [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 11/148 (7%) Query: 1 MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 MK++ + K + LD + S+ G +S+++ ++ R ++ Sbjct: 2 MKYIGSTKKDKLNGEEQLA-FLDYLKNSLNNGFSLSNSIELMPVLWPKQ-RVLMGKLARR 59 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G SLSE + ++ T +++ Q GNL+E L L+ + R ++ K Sbjct: 60 MKNGASLSEELIKLGFS------RTMVTQVNLSLQ-QGNLTECLEQLAILSRLKQEQIKK 112 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146 ++A A ++ L + + + Sbjct: 113 LRAELSYPLVLAIMMIVLLMFMQSFISM 140 >gi|94984864|ref|YP_604228.1| type II secretion system protein [Deinococcus geothermalis DSM 11300] gi|94555145|gb|ABF45059.1| type II secretion system protein [Deinococcus geothermalis DSM 11300] Length = 406 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 16/164 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSESISRMVRYMPL 78 + + AG+P+ A+A++ Q + F+ +I++ G LSE++ + + Sbjct: 75 LATLINAGVPLVQALAILQRQIEN---KTFQNIIKSIRTDVESGTPLSEALVKHPKV--- 128 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + + + G L L ++ ++ K+++ + + Sbjct: 129 --FNRLYINLVRAGETSGTLDSILERIAAFQEKELGLRGKLKSALTYPVVVLVFAIGITY 186 Query: 139 CVSTLVYFTSPGYMNVLINDP---RGHMLLGVAAAFMLIGIMVM 179 + T + G + L N P L+ V+ G++++ Sbjct: 187 FLLTTIVPQFAGILAQL-NAPLPLITRALMAVSDFLQHSGLLIL 229 >gi|307244466|ref|ZP_07526575.1| type II secretion system F domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492159|gb|EFM64203.1| type II secretion system F domain protein [Peptostreptococcus stomatis DSM 17678] Length = 351 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 11/151 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MK L++K+ + I ++G + I+ SS V V Sbjct: 1 MKILLQKKIR--DKELKLICQQIASMEKSGCDLMTIFDTIINTSSKKVSGVMAMVKRNIE 58 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +++E+ S F + ++ GN+ ++ +K K Sbjct: 59 RGRTMTEAF------YLTNAFSVFFISMIRAGEVSGNIDFVFEKMTAYYDREYRLKNK-- 110 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 L A ++ C+ ++ F P + Sbjct: 111 -LIAAAIYPMILVFVTLLCLVFMLVFVVPNF 140 >gi|254517129|ref|ZP_05129187.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] gi|219674634|gb|EED31002.1| general secretion pathway protein F [gamma proteobacterium NOR5-3] Length = 401 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 10/137 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGLP+ ++ V++ +S P + + V+++ G +LS ++ Sbjct: 71 LAVLLRAGLPLDRSLKVLIEMASLPSMAALLSDVLKSVKDGKALSIALEPYSELFGR--- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G +S L L L K + V A ++ + Sbjct: 128 --FYLSMLRSGEASGEMSAVLDRLVAHLETAKATRDSV---VSALIYPAILLVVAVLSIV 182 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F P L ND Sbjct: 183 VMLAFVVPQ-FETLFND 198 >gi|81428916|ref|YP_395916.1| putative type II secretion/competence system, protein comGB-like [Lactobacillus sakei subsp. sakei 23K] gi|78610558|emb|CAI55609.1| Putative Bacterial type II secretion/competence system, protein comGB-like [Lactobacillus sakei subsp. sakei 23K] Length = 335 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 28/187 (14%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ A+F + + L ++ R + G + A A + R +V + G SL+ Sbjct: 5 RQQAQF---YADFLQLLGRLLENGFSLQQAFAFLPIVFPKQ-RQWLNQVNQALEKGDSLA 60 Query: 67 ESISRM---VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S++ Y+ E++ +L GNL + L +L RI R+ + +++ + Sbjct: 61 VSLAHADFPTDYVGQIELT----------ELQGNLGQCLWHLGRIQSIRQKRRREIRGVL 110 Query: 124 M----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLI 174 +IG L + + +P + P + LL + M Sbjct: 111 AYPLFLLAFLGGLIGLLRHYLLPEIAQITPE--SNQTGSPLSRIILWGFLLVLVLLIMGS 168 Query: 175 GIMVMRL 181 G+ ++ Sbjct: 169 GLFMVYR 175 >gi|149917608|ref|ZP_01906105.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1] gi|149821671|gb|EDM81069.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1] Length = 422 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 13/163 (7%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ + AG+ + +A+ + Q P ++ + + G SL+++++ + Sbjct: 90 LMSTLLCAGVTLPEALVALTDQVESPRFKNVLSDIGSKVNEGSSLADAMASHPKV----- 144 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL----SMEAKASAWIIGSL 136 + + + G+L L ++ + ++ +++KV A ++ L Sbjct: 145 FTKLYINMVRAGEASGSLETVLIRIADFMDQQEELRSKVTTAMFYPVAMALVGVGVVTLL 204 Query: 137 PFCVSTLVYFTSPGY---MNVLINDPRGHMLLGVAAAFMLIGI 176 V + G + G V +++ G Sbjct: 205 MVKVVPSISEIFAGQGAELPFTTRTLIGFSDFLVGYWWLVFGA 247 >gi|296436104|gb|ADH18278.1| general secretion pathway protein F [Chlamydia trachomatis G/9768] gi|296437964|gb|ADH20125.1| general secretion pathway protein F [Chlamydia trachomatis G/11074] gi|297140465|gb|ADH97223.1| general secretion pathway protein F [Chlamydia trachomatis G/9301] Length = 391 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 +V +R+G+ + DA+ + Q + ++E G SE+++R Sbjct: 64 LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + + GNL AL N+ ++L +++ + + A ++ Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178 Query: 142 TLVY 145 V Sbjct: 179 IGVI 182 >gi|78043922|ref|YP_359488.1| type IV pilus assembly protein PilC [Carboxydothermus hydrogenoformans Z-2901] gi|77996037|gb|ABB14936.1| type IV pilus assembly protein PilC [Carboxydothermus hydrogenoformans Z-2901] Length = 402 Score = 35.8 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 10/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ AV V+ Q + ++ R+ E G +LSES+ + P Sbjct: 73 LGTMIAAGVPLLTAVNVLSRQVENKTLKKSLIRIEEKLRNGNTLSESLRE-EKIFP---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +++ V ++GG L L LS + K++ ++ + V Sbjct: 128 ELMCSMVEV-GEVGGVLDNVLDRLSLHYEKEAQLSEKIR---SAMTYPMVVLFAAIAAVL 183 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 LV + P + +L+ L+ Sbjct: 184 VLVTYVLPQFTGILLQANIELPLITQVVI 212 >gi|309803910|ref|ZP_07697994.1| type II secretion system F domain protein [Lactobacillus iners LactinV 11V1-d] gi|309809545|ref|ZP_07703403.1| type II secretion system F domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308164005|gb|EFO66268.1| type II secretion system F domain protein [Lactobacillus iners LactinV 11V1-d] gi|308170217|gb|EFO72252.1| type II secretion system F domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 331 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A LIGI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163 >gi|302821967|ref|XP_002992644.1| hypothetical protein SELMODRAFT_135648 [Selaginella moellendorffii] gi|300139608|gb|EFJ06346.1| hypothetical protein SELMODRAFT_135648 [Selaginella moellendorffii] Length = 622 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%) Query: 52 FRRVIETQHLGLSLSESISRMVRYM-PLQE-VSFFSTVISVQSQLGGNLSEALANLSRIL 109 R + G +L + + R + ++E FF+ + L+ +L L Sbjct: 372 LARTAQALGAGFALGSVFTHLGRNVVGVRERYGFFAFTL------TFLLTSTSESLPMFL 425 Query: 110 RDRKNMKAKVQALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 +R+ + + + + S+++I LPF + +T P Y V +N + Sbjct: 426 AERQIFERETSRGTY--RVSSYVIANTLMFLPFLFVFSLLYTVPAYFLVGLNHSIEAYVF 483 Query: 166 GVAAAFMLI 174 + +M++ Sbjct: 484 FLLDVWMVV 492 >gi|160900921|ref|YP_001566503.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160366505|gb|ABX38118.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 405 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + ++AG+P+ A ++ +++P R++ + S++ R PL Sbjct: 75 MATMMKAGVPLLQAFDIVGRGNTNP---SVTRLLADIRSDVETGTSLNAAYRKHPLY-FD 130 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 131 SLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKSKIKSALMYPISVVVVAFIVVTIIML 190 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V + D L + + + + + Sbjct: 191 FVIPAFKDVFSSFGADLPAPTLFVMGVSDIFVQWWWV 227 >gi|27381131|ref|NP_772660.1| general secretion pathway protein F [Bradyrhizobium japonicum USDA 110] gi|27354298|dbj|BAC51285.1| bll6020 [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG ++D + ++ +R + G S +E+++R P Sbjct: 73 LALLLRAGARINDGLELLAADPDLGRLRPVVADIRSRVVSGESFAEALARHEGLFP---- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ V + G+L + L L+ + ++ + LS + +++G+ + Sbjct: 129 PMYIALVRV-GEASGSLDQVLEVLAGERTRSEALRRR---LSDAIRYPLFVLGAAGCVLL 184 Query: 142 TLVYFTSPGYMNVL 155 + F P + +VL Sbjct: 185 FFLTFVLPQFASVL 198 >gi|325845114|ref|ZP_08168425.1| type II secretion system protein F domain protein [Turicibacter sp. HGF1] gi|325488856|gb|EGC91254.1| type II secretion system protein F domain protein [Turicibacter sp. HGF1] Length = 400 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 V AG+ + + + ++ Q + P ++ +V E G SL ES+S+ P + Sbjct: 75 VDAGVQIDNCLDILSTQLTHPELKKALTQVHEDVQRGESLYESMSKHEEEFPELLLKM-- 132 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 ++ GNL L +S M AKV+ + A + V+ ++ Sbjct: 133 ---IQSGEVSGNLDTILLRMSVYYEKENKMNAKVKNAMIYPSILAIVAAG---AVTVILT 186 Query: 146 FTSPGYMNVL 155 F P ++ + Sbjct: 187 FVMPTFIEMF 196 >gi|255594312|ref|XP_002536066.1| conserved hypothetical protein [Ricinus communis] gi|223521010|gb|EEF26318.1| conserved hypothetical protein [Ricinus communis] Length = 238 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + ++AG+P+ A+A + Q+ +++ R V G LS+++ + P Sbjct: 46 MEQLLQAGVPLLQALADLDEQNEHQGMKAALRNVQRDLEAGKLLSQALQAQPKIFP---- 101 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +I + G L E +L+R L + ++++V+ + + + ++ Sbjct: 102 PLLGQLID-AGERTGQLPEIFGHLTRTLSWQAELRSQVRRG-----LTYPAVLCVMVAIA 155 Query: 142 TLVY 145 V Sbjct: 156 AYVM 159 >gi|313200632|ref|YP_004039290.1| type II secretion system protein [Methylovorus sp. MP688] gi|312439948|gb|ADQ84054.1| type II secretion system protein [Methylovorus sp. MP688] Length = 395 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+P+ A+ ++ +R+ V G LS ++ Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 + ++ V + G + E + + Sbjct: 321 TTSIA-----IRMLRVGERTG-RMGEMMERI 345 >gi|254498866|ref|ZP_05111573.1| putative type IV pilus, mannose-sensitive hemagglutinin protein [Legionella drancourtii LLAP12] gi|254351920|gb|EET10748.1| putative type IV pilus, mannose-sensitive hemagglutinin protein [Legionella drancourtii LLAP12] Length = 408 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 10/161 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAG+P++ A+ + + + + ++++ T + G SL+ ++++ Sbjct: 72 FCRQMYSLIRAGIPIATAITRLGETTRNKTLADALQKIVITLNKGSSLNVAMAQFPNI-- 129 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 S F + + + GNL +L++ L ++ KV+ + + ++ Sbjct: 130 ---FSTFFLNLVIIGENTGNLDNIFLHLAKYLELEVDITKKVK---SALRYPIMVFAAII 183 Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + F P L G + L + ++ Sbjct: 184 IALLIINVFVIPA-FAKLYASMHGILPLPTRILLAISNFII 223 >gi|253998558|ref|YP_003050621.1| type II secretion system protein [Methylovorus sp. SIP3-4] gi|253985237|gb|ACT50094.1| type II secretion system protein [Methylovorus sp. SIP3-4] Length = 395 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 + +R G+P+ A+ ++ +R+ V G LS ++ Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105 + ++ V + G + E + + Sbjct: 321 TTSIA-----IRMLRVGERTG-RMGEMMERI 345 >gi|187930901|ref|YP_001901387.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241258198|ref|YP_002978464.1| type II secretion system protein [Ralstonia pickettii 12D] gi|309783226|ref|ZP_07677939.1| bacterial type II secretion system protein F domain-containing protein [Ralstonia sp. 5_7_47FAA] gi|187728945|gb|ACD30108.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240868998|gb|ACS66655.1| type II secretion system protein [Ralstonia pickettii 12D] gi|308917970|gb|EFP63654.1| bacterial type II secretion system protein F domain-containing protein [Ralstonia sp. 5_7_47FAA] Length = 346 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 10/144 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 L V +RAG+P + A+ + +S + S + + GLSL E++ P Sbjct: 213 LLSFVALLRAGIPDTVALDNQIASASPWLASRLKPIRNGLIDGLSLPEAMRATGYGFPSP 272 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 ++ + ++ A+ + ++ + + + SA G + Sbjct: 273 DLIDEIGAYAGFDDFTDKIAVAVRQYAEVIERQLLARGML--------MSAVFTGFM--F 322 Query: 140 VSTLVYFTSPGYMNVLINDPRGHM 163 ++ +V ++ ++ G + Sbjct: 323 LAFVVLQLGANSLSSILTSAMGQI 346 >gi|58040372|ref|YP_192336.1| hypothetical protein GOX1942 [Gluconobacter oxydans 621H] gi|58002786|gb|AAW61680.1| Hypothetical protein GOX1942 [Gluconobacter oxydans 621H] Length = 391 Score = 35.8 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 15/91 (16%) Query: 5 IKKRTAKFLDDFPNALDII-VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +++RT D + ++ R+ ++G+ + + S+DP E RR+ + G Sbjct: 17 LQRRTQALRDALNRRMQLLFSRAAQSGIVMPQS----GTSSADPFSDEMRRLQSEANQGH 72 Query: 64 SLSESI------SRMVRYMPL---QEVSFFS 85 E++ M M +++ + Sbjct: 73 G-DEALKRLQQMEDMAERMRQASPEDLKALA 102 >gi|108800832|ref|YP_641029.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS] gi|119869972|ref|YP_939924.1| putative adenylate/guanylate cyclase [Mycobacterium sp. KMS] gi|126436430|ref|YP_001072121.1| putative adenylate/guanylate cyclase [Mycobacterium sp. JLS] gi|108771251|gb|ABG09973.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS] gi|119696061|gb|ABL93134.1| putative adenylate/guanylate cyclase [Mycobacterium sp. KMS] gi|126236230|gb|ABN99630.1| putative adenylate/guanylate cyclase [Mycobacterium sp. JLS] Length = 540 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%) Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 AL ++ + ++ M + W++ S + L+ M L Sbjct: 198 ALRPIAAQALEAGRPPRRLAQGVMGRTMTVWLLSSGVPVLGILLLAVFSLSMQNLSATQF 257 Query: 161 GHMLLGVAAAFMLIGIMVMRLM 182 G ++ +A +L G+++M L+ Sbjct: 258 GIAVMIIAVVALLFGLILMWLL 279 >gi|57242547|ref|ZP_00370485.1| general secretory pathway protein F [Campylobacter upsaliensis RM3195] gi|57016832|gb|EAL53615.1| general secretory pathway protein F [Campylobacter upsaliensis RM3195] Length = 393 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 15/144 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 I +++G +S A + + E F+++ + GL LS + ++ Sbjct: 263 FFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKVGI--- 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L A ++ +++ ++ +E + Sbjct: 320 ---FDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLE--------PLMT 368 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 V LV F + G + G Sbjct: 369 LLVGILVLFLALGIFLPMWELSSG 392 >gi|297622118|ref|YP_003710255.1| putative general secretion pathway protein F [Waddlia chondrophila WSU 86-1044] gi|297377419|gb|ADI39249.1| putative general secretion pathway protein F [Waddlia chondrophila WSU 86-1044] Length = 394 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 14/145 (9%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72 D + + V AG+P+ +++ + Q + + E G SLS ++ Sbjct: 57 DQLLAFTMQLAQLVGAGVPIYESLIALEEQCRHERYHRILLSLCEQIKAGKSLSAAMEDF 116 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + G+L L L+ +L + ++ + +A I Sbjct: 117 P-----ATFDKLYYSMIRAGESSGSLDVVLEKLAELLAKQYKLRKDI--------MTAMI 163 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157 + ++ G++ +I Sbjct: 164 YPGILAGFCLVLIIILLGFVVPMIE 188 >gi|227489285|ref|ZP_03919601.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090816|gb|EEI26128.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC 51867] Length = 466 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSLSESISRMVRYMPLQEV 81 R+ GL +S A I+ +DP EF G++L ++ M ++V Sbjct: 194 SRASALGLDISRA--EIIDHLTDPRAEEFAAQFAELRKKKGVTLEQARETM------KDV 245 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 S+F T++ Q G +S A + +R + ++ + S+ + ++ Sbjct: 246 SYFGTMLVHTGQADGMVSGASHTTAHTIRPSFQI---IKTKPGTSVVSSIFLMAM 297 >gi|315637876|ref|ZP_07893066.1| general secretory pathway protein F [Campylobacter upsaliensis JV21] gi|315482117|gb|EFU72731.1| general secretory pathway protein F [Campylobacter upsaliensis JV21] Length = 393 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 15/144 (10%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77 I +++G +S A + + E F+++ + GL LS + + Sbjct: 263 FFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKAGI--- 319 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G L A ++ +++ ++ +E + Sbjct: 320 ---FDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLE--------PLMT 368 Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161 V LV F + G + G Sbjct: 369 LLVGILVLFLALGIFLPMWELSSG 392 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 9/156 (5%) Query: 1 MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +K L K+ K D F + AGL + +A+ ++ SS ++ + + Sbjct: 41 LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELSANL 100 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G SLS + + + L E+S + GNL+ + ++ + R + Sbjct: 101 NSGQSLSVAFGNLALNLNLSELSLIKMG-----EKTGNLAHIFSQIAEL---RTKLILNK 152 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + +L L++F P ++++ Sbjct: 153 KRFKKAIHYPCLVFLALFGAFLFLMFFVVPEFLDIF 188 >gi|269986816|gb|EEZ93094.1| hypothetical protein BJBARM4_0292 [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 705 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 11/164 (6%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH-LGLSLS 66 F A+ + + G P + + PV F I LG+SL Sbjct: 436 LTAIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVAEFFDVTINNIRKLGMSLK 495 Query: 67 ESISR----MVRYMPLQEVSFFSTV---ISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 ++ R+ P ++ +S ++ N S A + +S+ L + + ++ +V Sbjct: 496 DAFFNPTNGSTRFFPSP--LILASTKIFLSSAAKSVRNASVATSYVSKHLANLRKIEEQV 553 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++ E + + L + + ++ G + Sbjct: 554 RSMLEEVTSGMRVEVGLISPAMAGIVVGLTTLIGTVLTSLSGSI 597 >gi|149195012|ref|ZP_01872105.1| General secretion pathway protein F [Caminibacter mediatlanticus TB-2] gi|149134933|gb|EDM23416.1| General secretion pathway protein F [Caminibacter mediatlanticus TB-2] Length = 397 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +G+ +A+ + + ++ ++ F + E G LS S+ + F Sbjct: 274 TSSGVTFVNALNLSINTFNNEKLKEIFNKAFEEVVEGKKLSISLKKAGFIYD----KSFL 329 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +++ + + L NLS + + M+ +E + G + F V+ L+ Sbjct: 330 QALALAEET-SEVDNILKNLSELYFEENKMRINTLLSLLEPALMIIVGGVIGFIVTALLL 388 Query: 146 FTS 148 Sbjct: 389 PIF 391 >gi|170723698|ref|YP_001751386.1| type II secretion system protein [Pseudomonas putida W619] gi|169761701|gb|ACA75017.1| type II secretion system protein [Pseudomonas putida W619] Length = 402 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG+P+ A V+ S + R+ + GL L++++ R ++ Sbjct: 72 LATLLRAGVPLLQAFQVMGRSGCSAAQAALLERLKQDVAAGLGLADALQRHPQWFD---- 127 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ V Q G L L L+ +L R+ + +V+ Sbjct: 128 GLYCNLVRVGEQSG-TLDRQLEQLAGMLEQRQALLKRVRK 166 >gi|119505083|ref|ZP_01627159.1| TonB-dependent siderophore receptor [marine gamma proteobacterium HTCC2080] gi|119459065|gb|EAW40164.1| TonB-dependent siderophore receptor [marine gamma proteobacterium HTCC2080] Length = 406 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 9/149 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V + LP+ + + Q+ P ++S V G +L+ +++ + E+ Sbjct: 76 LATLVASALPLDECLQAAAEQTRKPSIKSILLEVRSRVSEGYTLASGMAQYPQAFG--EM 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L+ L L+ +R+ K++ + ++G V+ Sbjct: 134 Y---RAMVHAGEQAGQLAPVLEQLAEYTENRQLTAQKLKLALI---YPFVLMGVAVSVVA 187 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 L+ F P + + + + L V Sbjct: 188 ALMVFVVPELVGIFTHTKKELPPLTVGLI 216 >gi|22124672|ref|NP_668095.1| type IV pilin biogenesis protein [Yersinia pestis KIM 10] gi|45440117|ref|NP_991656.1| type IV pilin biogenesis protein [Yersinia pestis biovar Microtus str. 91001] gi|153997530|ref|ZP_02022630.1| putative type II secretion system protein [Yersinia pestis CA88-4125] gi|162100163|ref|YP_652836.2| type IV pilin biogenesis protein [Yersinia pestis Antiqua] gi|162139448|ref|YP_646593.2| type IV pilin biogenesis protein [Yersinia pestis Nepal516] gi|162421450|ref|YP_001605603.1| type IV pilin biogenesis protein [Yersinia pestis Angola] gi|165925869|ref|ZP_02221701.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. F1991016] gi|165936613|ref|ZP_02225180.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. IP275] gi|166010015|ref|ZP_02230913.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. E1979001] gi|166214119|ref|ZP_02240154.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. B42003004] gi|167398755|ref|ZP_02304279.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420522|ref|ZP_02312275.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423299|ref|ZP_02315052.1| putative protein transport protein HofC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469162|ref|ZP_02333866.1| putative protein transport protein HofC [Yersinia pestis FV-1] gi|218930444|ref|YP_002348319.1| type IV pilin biogenesis protein [Yersinia pestis CO92] gi|229839071|ref|ZP_04459230.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896550|ref|ZP_04511718.1| putative type II secretion system protein [Yersinia pestis Pestoides A] gi|229899635|ref|ZP_04514776.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901030|ref|ZP_04516153.1| putative type II secretion system protein [Yersinia pestis Nepal516] gi|270489208|ref|ZP_06206282.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|21957483|gb|AAM84346.1|AE013678_1 putative integral membrane protein [Yersinia pestis KIM 10] gi|45434972|gb|AAS60533.1| putative type II secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|115349055|emb|CAL22016.1| putative type II secretion system protein [Yersinia pestis CO92] gi|149289167|gb|EDM39247.1| putative type II secretion system protein [Yersinia pestis CA88-4125] gi|162354265|gb|ABX88213.1| putative protein transport protein HofC [Yersinia pestis Angola] gi|165915262|gb|EDR33872.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. IP275] gi|165922481|gb|EDR39658.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. F1991016] gi|165990922|gb|EDR43223.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. E1979001] gi|166204750|gb|EDR49230.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961328|gb|EDR57349.1| putative protein transport protein HofC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051259|gb|EDR62667.1| putative protein transport protein HofC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057469|gb|EDR67215.1| putative protein transport protein HofC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681755|gb|EEO77848.1| putative type II secretion system protein [Yersinia pestis Nepal516] gi|229687127|gb|EEO79202.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695437|gb|EEO85484.1| putative type II secretion system protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700624|gb|EEO88655.1| putative type II secretion system protein [Yersinia pestis Pestoides A] gi|270337712|gb|EFA48489.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|320016633|gb|ADW00205.1| putative type II secretion system protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 399 Score = 35.4 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 ++ +R ++AGLP+ +++ ++ ++ D R + + Sbjct: 54 RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 106 Query: 61 LGLSLSESISRMVRYMP 77 G SLSE + + P Sbjct: 107 QGQSLSEVMEQYPHVFP 123 >gi|332969022|gb|EGK08062.1| type IV pilin biogenesis protein PilC [Kingella kingae ATCC 23330] Length = 422 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ A ++ ++ + + + G +L +S ++ +Y Sbjct: 91 LSTMMKAGLPLMQAFDIVAKGHANASMTAMLMEIRNDVEQGEALGDSFAKHPKY-----F 145 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + GG L L L+ + +K KV++ + + +L + Sbjct: 146 DKFYCNLVAAGEAGGVLEGLLDKLATYKEKTEAIKKKVKSALTYPISIVVVAVALVIVMM 205 Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179 V + + + P ++ ++ AF+ G +++ Sbjct: 206 MFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVEFGWLII 245 >gi|192361623|ref|YP_001983784.1| general secretion pathway protein F [Cellvibrio japonicus Ueda107] gi|190687788|gb|ACE85466.1| General secretion pathway protein F [Cellvibrio japonicus Ueda107] Length = 411 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 10/167 (5%) Query: 6 KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 ++R K + D + VR+GLP+ +A+ QS V+ +V G Sbjct: 63 RRRAGKLSVRDLSLITRQLASLVRSGLPLDEALQATAKQSQKANVKRVVLQVRTRVLEGF 122 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL++++ + + + G LS L L+ + + ++ +++ Sbjct: 123 SLAQAMGD-----NPGAFNDMYRALVRAGEGSGYLSPVLERLADYTQTSQQLQQRIK--- 174 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 M ++ + L+ + P + + R +L A Sbjct: 175 MAMIYPVVMLMVSIGVIVALMVWVVPKLVKIFEQGGRELPMLTQALI 221 >gi|323975731|gb|EGB70827.1| type II secretion system protein F [Escherichia coli TW10509] Length = 400 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 11/146 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLALDLEQGVAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160 V +++F P + + N P Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199 >gi|331671621|ref|ZP_08372419.1| protein transport protein HofC [Escherichia coli TA280] gi|331071466|gb|EGI42823.1| protein transport protein HofC [Escherichia coli TA280] Length = 400 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 11/146 (7%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ + ++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLVLLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWPEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160 V +++F P + + N P Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199 >gi|150019029|ref|YP_001311283.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] gi|149905494|gb|ABR36327.1| type II secretion system protein [Clostridium beijerinckii NCIMB 8052] Length = 400 Score = 35.4 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 15/137 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +GLP+ +A+ ++ + + + E ++ + G SL S+ E+ Sbjct: 274 LSTLIASGLPLVEALKIVADVAGNKIAEIELLKIRDKVVRGESLYTSMRESGI---FPEM 330 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + +++ + + G +L + L + + + S+ + A + L + Sbjct: 331 LY--SMVKIGEETG-SLDDILNKTADFYDEELD--------SIIQSSVALMEPILIVVMG 379 Query: 142 TLVYFTSPGYMNVLIND 158 ++ F M + + Sbjct: 380 LIIGFMVASIMIPMFDS 396 >gi|51595055|ref|YP_069246.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP 32953] gi|153948491|ref|YP_001402329.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP 31758] gi|51588337|emb|CAH19945.1| putative outer membrane protein export (MTB) sytem, hofC subunit [Yersinia pseudotuberculosis IP 32953] gi|152959986|gb|ABS47447.1| putative protein transport protein HofC [Yersinia pseudotuberculosis IP 31758] Length = 399 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 ++ +R ++AGLP+ +++ ++ ++ D R + + Sbjct: 54 RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 106 Query: 61 LGLSLSESISRMVRYMP 77 G SLSE + + P Sbjct: 107 QGQSLSEVMEQYPHVFP 123 >gi|294781781|ref|ZP_06747114.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA] gi|294481891|gb|EFG29659.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA] Length = 345 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + + + +++ + +G ++ +S + Sbjct: 15 LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTMGKNIYDSFKPFENTFGSTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +L GN+ E+L ++S+ L ++ + + + +I VS Sbjct: 75 YILKIG-----ELSGNIVESLEDISKSL--DFDLSRRKKLGGILI-YPIVVICLTFLIVS 126 Query: 142 TLVYFTSPGYMNVL 155 L+ + P ++ + Sbjct: 127 FLLIYILPSFITIF 140 >gi|283788195|ref|YP_003368060.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] gi|282951649|emb|CBG91349.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium ICC168] Length = 342 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 15/133 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMVRYMPLQEVS 82 ++AGLP+ D++ + + + F + +I S++ M +P E+ Sbjct: 20 IKAGLPLYDSLQKLQKEGQALLGKGFSKRLLGLINQMKQETSVAAVFEGM---VPNSEL- 75 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + ++ G LSE L I++ ++ K+ + +I ++ Sbjct: 76 ----SVITAAERSGRLSEGFFTLVSIIKYNDELRKKIIGALI---FPLIMITLSLIVIAG 128 Query: 143 LVYFTSPGYMNVL 155 P + +V+ Sbjct: 129 YSQKVFPAFASVV 141 >gi|312879793|ref|ZP_07739593.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] gi|310783084|gb|EFQ23482.1| Type II secretion system F domain [Aminomonas paucivorans DSM 12260] Length = 385 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 9/125 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 + +++GLP++ + ++ SS + +R + E+ G SL+ ++ Sbjct: 69 LAGFLKSGLPLAQVLGLLERTSSKNQRLGDLYRTLRESVESGRSLAVALKESGL------ 122 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAWIIGSLPFC 139 + ++ L E L +R+ D ++ K+Q+ ++ +G + F Sbjct: 123 FRPVLLGLVESAEASSKLPEILDRAARLFGDELKLRRKIQSAVTYPLAMLVIGVGVVGFL 182 Query: 140 VSTLV 144 ++ +V Sbjct: 183 LTYVV 187 Score = 33.9 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +++G+P+ A+ + D R+ +R V E+ +G S+ + R E Sbjct: 261 LSTLLKSGIPLVQALELTAPMDRD--RNRWRAVAESVRMGYRFSQGLERQG---GFPE-- 313 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 V+ + +LGG+L ++L L +R Sbjct: 314 DLLAVLRIA-ELGGDLPDSLERLGATCWERSQA 345 >gi|167769280|ref|ZP_02441333.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM 17241] gi|167668248|gb|EDS12378.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM 17241] Length = 290 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 2/148 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + + P + I + + A V + S +E + G S Sbjct: 141 KRDEIEAELPRFVATITQELAASRDVLSMIEHYKQNSGPVFSAELDVLTADMRSG-SYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + G N LS ++ + + K +A+ + K Sbjct: 200 ALTRFEARFNSPLLSDIVRGL-IGVLRGDNGVHYFQMLSHDMKQLELQRLKAKAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + L + T + ++ L Sbjct: 259 IRVFSFVLLMCFLVTYLSIIIYEIIHSL 286 >gi|167586040|ref|ZP_02378428.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 336 Score = 35.4 bits (81), Expect = 3.4, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Query: 21 DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 + ++AGLP++ A+ ++ + D + + G + +++ P Q Sbjct: 4 QQLASLLQAGLPLAPALEMLARTRGPDGMPRIAAGLAREIGGGRRFAAALA----RYPTQ 59 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 S + +I + + G L LA ++ + K++A A I+ +L Sbjct: 60 FGSLYRQLIEI-GETSGALGPVLARVADHRERADAQRRKLRAALAYPV--AVILFALAIT 116 Query: 140 VSTLVYFTSPGYMNVL 155 ++ +++ P + + Sbjct: 117 IALMLWVV-PTFRQIF 131 >gi|325916237|ref|ZP_08178518.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] gi|325537531|gb|EGD09246.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria ATCC 35937] Length = 230 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A+ +I +P +R+ ++ G SL E++S P+Q Sbjct: 81 MATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVS----RHPVQ-F 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + + +K K++ A ++ + Sbjct: 136 DELYRNLVRAGEGAGVLETVLDTIATYKENIEALKGKIKKALF---YPAMVVAVALLVSA 192 Query: 142 TLVYFTSPGYMNVL 155 L+ F P + +V Sbjct: 193 ILLIFVVPQFEDVF 206 >gi|320531924|ref|ZP_08032831.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135860|gb|EFW27901.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon 171 str. F0337] Length = 215 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++ LP L ++L++ G + + M +G +V R +I Sbjct: 4 AGPRTTARLLACLPVVGLGLGMLVGADPASLLLDGGVGSAVGALGIVLMAVGHLVTRRLI 63 Query: 184 N 184 Sbjct: 64 R 64 >gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10] gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10] Length = 241 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV 41 + IKKR + FP+ ++ + + AGL +S A I Sbjct: 137 LSRKIKKRHLEIQLSFPDFINKLALMLNAGLTMSKAWEKIS 177 >gi|110833474|ref|YP_692333.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2] gi|110646585|emb|CAL16061.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2] Length = 410 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ +P ++ ++ G + + ++ M Sbjct: 79 MATMMKAGVPLVQAFEIVADGLDNPAMKVVVMKLKTEVEGGNNFAGAL-----RMHPLLF 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L ++ + +K K++ K +I + Sbjct: 134 DDLYCSLVDAGEQSGALETMLDRVALYKEKSEALKQKIKKAL---KYPIAVICVAVIVTA 190 Query: 142 TLVYFTSPGYMNVL 155 L+ P + + Sbjct: 191 ILLIKVVPTFKELF 204 >gi|313890950|ref|ZP_07824572.1| putative magnesium and cobalt transport protein CorA [Streptococcus pseudoporcinus SPIN 20026] gi|313120674|gb|EFR43791.1| putative magnesium and cobalt transport protein CorA [Streptococcus pseudoporcinus SPIN 20026] Length = 305 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 L +R+ + +++ A + +P + Y + YM L P Sbjct: 221 TLRETIIQIREMAKSQLEMRQNKNMAVLTTVTTCCMPLTILVGWYGMNFKYMPEL-ASPL 279 Query: 161 GHMLLGVAAAFMLIGIMVMRL 181 G+ L+ + A + I ++ Sbjct: 280 GYPLVIIFAVTIFIAAILYSK 300 >gi|302669156|ref|YP_003832306.1| CorA-like Mg2+ transporter protein [Butyrivibrio proteoclasticus B316] gi|302396820|gb|ADL35724.1| CorA-like Mg2+ transporter protein [Butyrivibrio proteoclasticus B316] Length = 305 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + LG L E+ + + L+ FS+ + + + L + + L D + Sbjct: 181 QLLDLGQELEENENGFFKEENLRYFHMFSSRV----DRLYDSATHLRDYTIQLNDLYQSQ 236 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 V+ + + +P + Y + YM L G+ ++ V + F+++G Sbjct: 237 LDVRQNRIMTVLTVVTTIFMPLTLIVGWYGMNFKYMPEL-ESRLGYPVVIVLSIFIVVGS 295 Query: 177 MVMRLMINF 185 ++ + Sbjct: 296 LIFFKIKKI 304 >gi|225157634|ref|ZP_03725024.1| Type II secretory pathway component PulF-like protein [Opitutaceae bacterium TAV2] gi|224802701|gb|EEG20954.1| Type II secretory pathway component PulF-like protein [Opitutaceae bacterium TAV2] Length = 321 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + + AGLP+ A+ G + P R ++ G+S +++ ++P + Sbjct: 15 LAQQLEAGLPLIAAIRGNAG-APKPDRD---AMVRRLEDGMSFPDALDAAGPWLPRGDRL 70 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 F +T + G L L NLS Q + + + P + Sbjct: 71 FLATA-----SIAGRLPHTLRNLSS---------RHGQLAAASGRV--VMACIYPVVILH 114 Query: 143 LVYFTSPGYMNVLINDPRG 161 + P + +++ RG Sbjct: 115 VALLMFP--LLRMLDWERG 131 >gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662] gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662] Length = 445 Score = 35.4 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQHLGLSLSES 68 ++++P + V + AG+ + AV I V +F++ + LG+S +++ Sbjct: 301 MEEYPMIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 360 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + L S ++S G + L+ L + + + + E + Sbjct: 361 LRELGSSIQLPCYKKLSVLLSQSLLRGTR--DLLSRLEEEETEAFSERKETARRKGEEAS 418 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ + + L P +++ Sbjct: 419 TKLLMPMILMLIVILTLLMVPAFLSF 444 >gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348] gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348] Length = 615 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 N L I +RAGL + I + +R+ LG L ++ + Sbjct: 395 NLLRAISEGIRAGLSPETIIKNIKESQEMGKLSYILKRIYAYISLGYPLRDAFLKGAE-- 452 Query: 77 PLQEVSFFSTVISVQS--QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +++S+ +G E++ +L+ + + +K + + K + Sbjct: 453 EIVDFTSRISLVSMADMIDIGSLTPESIESLAEQVETQIKIKRE---YESKVKILLYTPY 509 Query: 135 SLPFCVSTLVYFTSPGYMNVLIND 158 V S + ++ + Sbjct: 510 IGVIISIIAVNLLSAAILGLITGN 533 >gi|241764544|ref|ZP_04762563.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241366036|gb|EER60646.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 424 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 12/149 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56 + HL + + +D L + +RAG+P DA+ +V +S+ + + R ++ Sbjct: 62 LMHLFRNQVRA--EDLAGFLRDLGLMMRAGVPALDALTTLVEESNSVGNRAMAAVARNML 119 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E + G+ ++++ +R P + V ++ G L LA + + N++ Sbjct: 120 EDLNAGVGMTDAFNRHPNVFP-ETVRNLVSI----GDQTGTLDRMLAEAAEHVERMINIR 174 Query: 117 AKVQALSMEAKAS-AWIIGSLPFCVSTLV 144 ++ + A IIG F + +V Sbjct: 175 RDIKTALIYPSFVFASIIGVAIFWIYYVV 203 >gi|326403163|ref|YP_004283244.1| type II secretion system protein [Acidiphilium multivorum AIU301] gi|325050024|dbj|BAJ80362.1| type II secretion system protein [Acidiphilium multivorum AIU301] Length = 406 Score = 35.4 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 13/164 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + + AGL + A+ G ++ P VR+ + + G +L ++ Sbjct: 67 DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAW 131 P F + + G L+ L +L+ +L ++++ A + L+ A + Sbjct: 127 PHSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 G++ F ++ ++ P ++ + + G L + IG Sbjct: 182 ATGAIVFLLTNVL----PEFVPIFAEN--GVPLPATTRLLLTIG 219 >gi|145600186|ref|YP_001164262.1| type IV pilin biogenesis protein [Yersinia pestis Pestoides F] gi|294505133|ref|YP_003569195.1| type II secretion system protein [Yersinia pestis Z176003] gi|108774474|gb|ABG16993.1| type II secretion system protein [Yersinia pestis Nepal516] gi|108780833|gb|ABG14891.1| putative type II secretion system protein [Yersinia pestis Antiqua] gi|145211882|gb|ABP41289.1| type II secretion system protein [Yersinia pestis Pestoides F] gi|262363194|gb|ACY59915.1| type II secretion system protein [Yersinia pestis D106004] gi|262367126|gb|ACY63683.1| type II secretion system protein [Yersinia pestis D182038] gi|294355592|gb|ADE65933.1| type II secretion system protein [Yersinia pestis Z176003] Length = 378 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 ++ +R ++AGLP+ +++ ++ ++ D R + + Sbjct: 33 RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 85 Query: 61 LGLSLSESISRMVRYMP 77 G SLSE + + P Sbjct: 86 QGQSLSEVMEQYPHVFP 102 >gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola At-22] gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola At-22] Length = 401 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S P+ R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E I Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373 Query: 133 IGSLPFCVSTLVYF 146 GSL + +Y Sbjct: 374 TGSLVGILLVAMYL 387 >gi|320172804|gb|EFW48036.1| Type IV fimbrial assembly protein PilC [Shigella dysenteriae CDC 74-1112] Length = 266 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 28/184 (15%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + + ++AGL +S+ +A++ Q ++ + + G++ S ++ Sbjct: 62 EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 P + +L G L E L+R + ++ + KV+ + I+ Sbjct: 122 PP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK---SALRYPIIILAMA 173 Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177 V +++F P + + N P +L+ + + Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKL 233 Query: 178 VMRL 181 +MR Sbjct: 234 LMRR 237 >gi|167772242|ref|ZP_02444295.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM 17241] gi|167665345|gb|EDS09475.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM 17241] Length = 292 Score = 35.4 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 2/148 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + + + P + I + + V + + + +E + G S Sbjct: 143 KRDEIEAELPRFVATITQELAVSRDVLSMIEHYKQHAGETFSAELDVLTADMRSG-SYEA 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + G N LS ++ + + K +A+ + K Sbjct: 202 ALTRFEARFNSPLLSDIVRGL-IGVLRGDNGINYFQMLSHDMKQLELQRLKAKAMKIPPK 260 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A+ + L + T + ++ L Sbjct: 261 IRAFSLTLLMCFLGTYLAIIIYEIIHSL 288 >gi|222055731|ref|YP_002538093.1| type II secretion system protein [Geobacter sp. FRC-32] gi|221565020|gb|ACM20992.1| type II secretion system protein [Geobacter sp. FRC-32] Length = 402 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 24/175 (13%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ ++AGLP+ A+ I+ + + V E G +LS + + + P Sbjct: 72 LLVLIKAGLPIIQALDTILERVEKGRLPEILNDVREDVKGGAALSTAFQKHPKVFPH--- 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + G+L + ++ L+ + K KV I+ V+ Sbjct: 129 --LYIASVQAGERTGDLPQTISRYIAFLKKSEGFKKKV---ISALIYPGIILTVAFLAVT 183 Query: 142 TLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRL 181 L+ + P + V + L VA ++I ++R Sbjct: 184 MLLVYVVPTFSQVYADSKSSLPLPTQMLIGFTSVLKRYFLVAVGLIIISAFLLRK 238 >gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 220 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57 + + ++R + + + + ++ +G+ V A+ V+ + D + E R V+ Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLT 193 Query: 58 TQHLGLSLSESISRMVRYMPLQEVS 82 GL L E + + + + E+S Sbjct: 194 RVDSGLELGEELRKTAAVLDVDELS 218 >gi|331269420|ref|YP_004395912.1| putative pilin biogenesis protein [Clostridium botulinum BKT015925] gi|329125970|gb|AEB75915.1| probable pilin biogenesis protein, putative [Clostridium botulinum BKT015925] Length = 396 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 27 VRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 ++AG+ + A+ V+ + + +R + + G +L +SI++ + P F Sbjct: 73 LKAGVNIETALEVLENQKINYLIRDSLKIIRRDIERGRTLFQSINKFSKIYP----EFMR 128 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 +I + + G NL L++ D+ MK K++ M ++ + + Sbjct: 129 QMIFIGEKSG-NLDNIFIKLAKYYMDQHRMKKKIKNAIM---YPLCVLIMTIIVTLFITF 184 Query: 146 FTSPGYMNVLI 156 P +++ I Sbjct: 185 RIIPKFVDNFI 195 >gi|226226497|ref|YP_002760603.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27] gi|226089688|dbj|BAH38133.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27] Length = 434 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + + + AG+P+ A++ + R+ F R+ G SLS + Sbjct: 99 ETLAALVRSMATLLAAGVPIDRALSHAASSENVHWRAPFVRIRNAVRRGESLSTAC---A 155 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L + + ++ G+L+ A L+ L ++A+V+ Sbjct: 156 AESALPSIMAPTVA---AAEATGSLASAFEGLAEYLERGAELRARVRG 200 >gi|291087540|ref|ZP_06346746.2| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] gi|291074702|gb|EFE12066.1| putative bacterial type II secretion system protein F domain protein [Clostridium sp. M62/1] Length = 332 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I +++ +P+ + ++V+ +S P E + + +G SE++S Sbjct: 3 ISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC------F 56 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + T ++V + G L E + +LSR + ++ A +I L + Sbjct: 57 PAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIVMLLVILF 113 Query: 142 TLVYFTSP 149 L P Sbjct: 114 ILFTRVMP 121 >gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC 35316] gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC 35316] Length = 402 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V A LP+ A+ I Q+ D + + + E G +L ++ S+ R Sbjct: 72 LSTLVNAALPLESALKAISKQTEDKKLAAMVVEIREKVVEGHTLFDAFSQFPR-----TF 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + + G+L + L L+ R+ MK+K+ QA+ + I + + Sbjct: 127 DKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVVAIAVISILL 186 Query: 141 STLV 144 +V Sbjct: 187 VAVV 190 >gi|183013923|ref|YP_001837237.1| hypothetical protein pAW63_021 [Bacillus thuringiensis serovar kurstaki] gi|70672698|gb|AAZ06591.1| hypothetical protein pAW63_021 [Bacillus thuringiensis serovar kurstaki] Length = 277 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 51/156 (32%), Gaps = 19/156 (12%) Query: 31 LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE---SISRMVRYMPLQEVSF---- 83 + ++ +S +R + + ++ + +G + + +M ++++F Sbjct: 110 QTLLTSLGRASDRSQGELREDLKILLASV-MGADQEQVLQAFKQMSNKYR-EDITFDQYL 167 Query: 84 --FSTVI---SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 T + + L + + + + + + K + + K +I F Sbjct: 168 EQLETCVLEGRTNLET---LKDIKTHHNETKEKKDDYERKKEGHLKDMKMLCGVIVV--F 222 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ F Y+ P G + G+ M Sbjct: 223 VLAISFSFGFKTYLTAFAGHPIGWITSGIYMILMFF 258 >gi|127514367|ref|YP_001095564.1| type II secretion system protein [Shewanella loihica PV-4] gi|126639662|gb|ABO25305.1| type II secretion system protein [Shewanella loihica PV-4] Length = 422 Score = 35.4 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ P +R ++ G+ LS+S+ +Y V Sbjct: 90 IATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQYFDDLYV 149 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + G+L ++ + +K+K++ Sbjct: 150 DLVG-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184 >gi|307545560|ref|YP_003898039.1| type IV pilus assembly protein PilC [Halomonas elongata DSM 2581] gi|307217584|emb|CBV42854.1| K02653 type IV pilus assembly protein PilC [Halomonas elongata DSM 2581] Length = 408 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAG+PV + V+ P +R + + G S++E++ R R+ + Sbjct: 78 MATLLRAGIPVLQGLGVVAKGVEKPAMRLLVEALSKEVTEGASVAEALGRHPRHFGGLFI 137 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + G L L ++ + ++ +V+ Sbjct: 138 HLVA-----AGEQSGTLERMLDRVATHKEKIERLQGRVR 171 >gi|299771789|ref|YP_003733815.1| pilin biogenesis protein [Acinetobacter sp. DR1] gi|298701877|gb|ADI92442.1| pilin biogenesis protein [Acinetobacter sp. DR1] Length = 408 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F + LDI + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ F +++ + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----KLFCSLVE-SGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSELLKQKIKK 172 >gi|325109358|ref|YP_004270426.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969626|gb|ADY60404.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 337 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 11/145 (7%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMV 73 + D++ +VR P+ DA+ + + + + E ++ V++ G SLS ++ Sbjct: 8 ELVEFNDMLAGTVRGNAPLPDAI-RLAQEGAGRRQRELQQFVLDRLERGQSLSAAL---A 63 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L + + + + G +L L SR L ++ + A ++ Sbjct: 64 ERPDLFDPRY--QQVVAAGEEGNHLGAVLEAFSRYLWQLIELRRSL----SRALLYPLLV 117 Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND 158 + + + V + D Sbjct: 118 TCIGYVLFVFVGGITTSRFVSFYRD 142 >gi|291529646|emb|CBK95232.1| hypothetical protein ERE_34920 [Eubacterium rectale M104/1] Length = 331 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 46/144 (31%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 ++++ + + + + DP+RS ++ ++ M Sbjct: 166 FINMLDNVSSSENTIGEMLHRTAPYLKDPLRSMTEECYSEIKTDGNVPLALKHMADKANH 225 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 +++ + + N SE + + +R K + + + A I+ Sbjct: 226 KKLKQILNSLKSCATHNENYSEVIEDNRESIRAYIMFKKEERNIIKNALFETVILAIAGV 285 Query: 139 CVSTLVYFTSPGYMNVLINDPRGH 162 + +V +N++ + G Sbjct: 286 VMVYMVGTMVDNAINIVFHTLPGQ 309 >gi|170025715|ref|YP_001722220.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis YPIII] gi|186894063|ref|YP_001871175.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis PB1/+] gi|169752249|gb|ACA69767.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|186697089|gb|ACC87718.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] Length = 378 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 ++ +R ++AGLP+ +++ ++ ++ D R + + Sbjct: 33 RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 85 Query: 61 LGLSLSESISRMVRYMP 77 G SLSE + + P Sbjct: 86 QGQSLSEVMEQYPHVFP 102 >gi|302389892|ref|YP_003825713.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] gi|302200520|gb|ADL08090.1| Type II secretion system F domain protein [Thermosediminibacter oceani DSM 16646] Length = 377 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 7/125 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 + + + +G+PV + ++V+ Q+S P + RRVI G +LSE+ Sbjct: 40 RELAVFCRQMASMLESGIPVIECLSVMCQQNSHPGLTRALRRVIRDLKRGFTLSEAFRNQ 99 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAW 131 P + ++ G L + L L+ + +++ ++ A A Sbjct: 100 PGIFP----EILIYTVET-GEIAGCLEDILKKLAVHFETMAKYRERLKTSMTYPAILGAV 154 Query: 132 IIGSL 136 + Sbjct: 155 ALVVF 159 >gi|297616457|ref|YP_003701616.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144294|gb|ADI01051.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 403 Score = 35.4 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 16/145 (11%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70 F F +++GLP+ + V+ Q+ + +R ++ + GL L E+++ Sbjct: 69 FTRQF-------ATMIKSGLPLLHCLQVLQLQARNRHLRQATTGIMRSVRRGLPLWEALA 121 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 P + ++ + GG L E L L+ L +K +++ + A Sbjct: 122 E----YPSIFSDLYVQMVK-AGETGGRLDEVLERLAAHLEKEHEVKQRIKNALIYPCTVA 176 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155 + ++ V+ L F P + +V Sbjct: 177 ILTLAV---VAFLTSFVVPAFASVF 198 >gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665] gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665] Length = 339 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 15/131 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + AG + A+ + R G E+ + + Sbjct: 205 VLDVLAALLSAGRSLPAALDDLGRTLPG--ARGLRATAALLLWGRDWDEAWAGLDT---- 258 Query: 79 QEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + T ++ + G + LA + +R + + E + + Sbjct: 259 -DPVWIETAARLRPLHRSGMAGARTLAETAAAVR---QQTRRADERAAE---ELAVCLVM 311 Query: 137 PFCVSTLVYFT 147 P + L F Sbjct: 312 PLGLCLLPAFV 322 >gi|269469296|gb|EEZ80804.1| type II secretory component PulF [uncultured SUP05 cluster bacterium] Length = 412 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 54/139 (38%), Gaps = 9/139 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAGLP+ + +++I Q+ +P ++ ++ G LS+S + P + Sbjct: 83 IRAGLPILETISMIEKQTINPTLKQVITQIHNDVESGTPLSDSFVKH----PYV-FNNVY 137 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + + G + L+ L + + +++ ++ ++ + ++ Sbjct: 138 INLLRAGESSGKVDLFLSKLVIGMEKDEKIRSSIKGALT---YPIVLLVVAIAVIVLMMV 194 Query: 146 FTSPGYMNVLINDPRGHML 164 F P + ++ P G Sbjct: 195 FVVPVFQDMFKGVPGGLPA 213 >gi|88859015|ref|ZP_01133656.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata D2] gi|88819241|gb|EAR29055.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata D2] Length = 412 Score = 35.4 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 13/155 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ A+ +I S ++ ++ + G S+++ + Sbjct: 80 IATMLMAGVPLIQAIDMIGSGSEKKSLQRLITKIADEVKAGNPFSDALRKHPIL-----F 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L ++ + +K+K++ ++ + Sbjct: 135 DDLYCDLVASGEQSGALDNIFDRVATYKEKSEALKSKIKK---AMIYPIAVLSIAFVVTT 191 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L+ F P + +V G A +IGI Sbjct: 192 ILLIFVVPQFQSVF----AGFGAELPAFTLFVIGI 222 >gi|78777585|ref|YP_393900.1| type II secretion system protein [Sulfurimonas denitrificans DSM 1251] gi|78498125|gb|ABB44665.1| type II secretion system protein [Sulfurimonas denitrificans DSM 1251] Length = 414 Score = 35.4 bits (81), Expect = 4.1, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 I+ +RAG+P++ A+ V + P++++ V G SL + L++ Sbjct: 284 ILSELIRAGIPITQALETSVSMVENLPLKNKLASVRFAVEKGSSLH---------VGLED 334 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 F I +Q S L ++ + + M+ S I + F + Sbjct: 335 TKLF-ENIIIQMISAAEDSGTLDTMTGKVAEYYKMRFDAVING----LSESIEPVMLFFI 389 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLG 166 +++V + G + + G++++G Sbjct: 390 ASMVLLLALGIFLPMWD--IGNVVMG 413 >gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans DSM 11486] Length = 581 Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 9/180 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLG 62 R + +FP + + V +GL A I+ Q + + F V+ + LG Sbjct: 97 RASAIDGEFPYTISYLSIMVMSGLSPYIAFERILKGSIIFQKTGELAQRF--VLLNKILG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + P V + + GG++ + L +R L + + K+ A Sbjct: 155 KDPLTAFAMLSDRNPSSRVRETLSGYISTVKAGGDVIDYLNKRARALFNDLLVSMKIIAD 214 Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMR 180 + +++ I L T++YF + Y V+ G M L + I I ++ Sbjct: 215 RLGGLLESYLAIVLLTMISFTVLYFVTASYSGVISFGIDTGTMSLLLYILMPFISIAIIY 274 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 5/173 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R ++ + +V + GLP ++ + + +++ LG+SL + Sbjct: 373 REYTIINGITRFIRDLVEVRKTGLPPEKSIIELSTRDYGVFSKYLKKISLELTLGVSLRK 432 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 I + + + +++ ++GG + L NL+ + ++A+ + + Sbjct: 433 IIEELFKKIKPWRAKVLLFILTDSIEVGGGTVDVLENLAWFAESIEAIEAEKKR----SM 488 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVM 179 + I+ L ++ YM + + + +++ +M Sbjct: 489 RTLMIVPYLGAVLTAFTIVFMAVYMGRIPLASGQFRAAASTVLPSIVLNTYLM 541 >gi|167751232|ref|ZP_02423359.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702] gi|167655739|gb|EDR99868.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702] Length = 399 Score = 35.1 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 8/175 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 D + + +G+ + A+ ++ QS + + + E G S SE+I+ Sbjct: 60 KDLSFFCRQLAAMLTSGVSLVKALQILQAQSENKKQKQVLLDIYEEVQKGRSFSEAIATK 119 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 P F +++S + G+L + +S + K++ + + Sbjct: 120 PGVFPS----LFVSMVS-AGEASGSLDTIMNRVSEHYAKDSKTQNKIKGAMIYPIVLLVL 174 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + + + T++ P + G++ I + +++ + Sbjct: 175 LLVIMIAMFTMIMPMFRDLAGDTEMPPLSAAIFGISDFM--INQWYILVIVAIAI 227 >gi|312875135|ref|ZP_07735150.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2053A-b] gi|311089341|gb|EFQ47770.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2053A-b] Length = 331 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A L+GI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIVSLLGIFFI 163 >gi|325911824|ref|ZP_08174228.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 143-D] gi|325476330|gb|EGC79492.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 143-D] Length = 331 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ S + + Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK--------SEMVYPA 119 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + +++ ++ A L+GI + Sbjct: 120 VLIVMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163 >gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58] gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58] Length = 375 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 15/131 (11%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD++ + AG + A+ + R G E+ + + Sbjct: 241 VLDVLAALLSAGRALPAALDDLGRTLPG--APGLRATAALLLWGRDWDEAWAGLDT---- 294 Query: 79 QEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + + T ++ + G + LA + +R + + A + + + Sbjct: 295 -DPVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVRL------VM 347 Query: 137 PFCVSTLVYFT 147 P + L F Sbjct: 348 PLGLCLLPAFV 358 >gi|332799372|ref|YP_004460871.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697107|gb|AEE91564.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 402 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 9/161 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 + + AG+ + +++ I Q+ + R +I +L + +S++ + P Sbjct: 70 FCRQLAVMLDAGVNILESLTSIAKQTEN---KRLREIIFNLNLHIRRGDSLAEACKNQPY 126 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 F + +L GNLS+ L LS D K+++ + + I F Sbjct: 127 VFSEIF-ICLIEAGELSGNLSDILKMLSAYYSDMAKQNEKIKSSMVYPSILSIISL---F 182 Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V L P Y N+ G L + F+L+G ++ Sbjct: 183 VVVFLTTKVLPVYANIF--SSAGVQLPKITQIFLLLGSNMI 221 >gi|148254080|ref|YP_001238665.1| putative general secretion pathway protein F [Bradyrhizobium sp. BTAi1] gi|146406253|gb|ABQ34759.1| putative general secretion pathway protein F [Bradyrhizobium sp. BTAi1] Length = 389 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG + D++ ++ G + +R R+ + G SL+++++ P + Sbjct: 59 LALLLKAGARLEDSLELLAGDADIGRLRPIVNRLRSSILAGESLADALAHHPLQFPAMYL 118 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L +R A + LS + +++ + + Sbjct: 119 ALVRVG-----EASGSLDHVLEVLGA---ERARADAMRRKLSDAMQYPLFVLAAAALVML 170 Query: 142 TLVYFTSPGYMNVL 155 P + VL Sbjct: 171 FFFLVVLPQFSAVL 184 >gi|77461042|ref|YP_350549.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77385045|gb|ABA76558.1| type 4 pilus biogenesis protein PilC [Pseudomonas fluorescens Pf0-1] Length = 405 Score = 35.1 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I +P +R V + G S + ++ + +Y E+ Sbjct: 75 MATMMKAGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFD--EL 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L L ++ +++KAK++ Sbjct: 133 Y---CNLVDAGEQSGALDTLLERVATYKEKSESLKAKIKK 169 >gi|325294496|ref|YP_004281010.1| type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064944|gb|ADY72951.1| Type II secretion system F domain [Desulfurobacterium thermolithotrophum DSM 11699] Length = 404 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 27 VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+ + A+ +I Q + ++ + G S ++S+ + Sbjct: 78 IHAGISIVTALRIIKEQIQNKSLKKIIEDIASHIEEGGKFSTALSKYKNIFG----ELYI 133 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 ++I + G L E L L+ L + ++ K+++ Sbjct: 134 SMIRAAEESG-TLEETLKRLAEYLEKIEKLRGKIKS 168 >gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55] gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55] Length = 401 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S P+ R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E I Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373 Query: 133 IGSLPFCVSTLVYF 146 GSL + +Y Sbjct: 374 TGSLVGILVVAMYL 387 >gi|150399784|ref|YP_001323551.1| type II secretion system protein [Methanococcus vannielii SB] gi|150399789|ref|YP_001323556.1| type II secretion system protein [Methanococcus vannielii SB] gi|150399794|ref|YP_001323561.1| type II secretion system protein [Methanococcus vannielii SB] gi|150399799|ref|YP_001323566.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012487|gb|ABR54939.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012492|gb|ABR54944.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012497|gb|ABR54949.1| type II secretion system protein [Methanococcus vannielii SB] gi|150012502|gb|ABR54954.1| type II secretion system protein [Methanococcus vannielii SB] Length = 351 Score = 35.1 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 9/130 (6%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77 + ++ + +G V +A+ I EFR +I+ + G + E++ R Sbjct: 185 ILHLISMLNSGASVQEAIKNIANNPEYGLTSYEFRSIIKDINQGGYNFVEALERAKVRSK 244 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + + + + GG L NL + + + +K +G+L Sbjct: 245 IPLLKKLYDQLILAANKGGT-QLLLENLYNEI------VRESLSKIDSSKFQISNLGNLI 297 Query: 138 FCVSTLVYFT 147 F + ++ F+ Sbjct: 298 FGIGLIIPFS 307 >gi|319944672|ref|ZP_08018939.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599] gi|319742111|gb|EFV94531.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599] Length = 415 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ + V F + G +LS++ + PL Sbjct: 85 LATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTDIKADVETGTALSQAFRK----YPLYFD 140 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + F ++ Q G L + L L+ + +KAK+++ Sbjct: 141 NLFCNLVGAGEQAGI-LDDLLDRLAMYKEKMEAIKAKIKS 179 >gi|149376815|ref|ZP_01894572.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] gi|149358936|gb|EDM47403.1| Type II secretory pathway, component PulF [Marinobacter algicola DG893] Length = 406 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + +R V G S + S+ R +Y Sbjct: 75 MATMMKAGVPLVQSFDIVTDGLENQGLRELIAAVRNDVASGTSFANSLRRHPKY-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L + L ++ L + +K KV+ Sbjct: 130 DDLYCNLVDSGEKAGALEQMLDRIAMYLEKSETLKKKVRK 169 >gi|50083623|ref|YP_045133.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1] gi|49529599|emb|CAG67311.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1] Length = 408 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFPN---------ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRS 50 ++ + +KR F + ++AG+P+ A ++ +P +R Sbjct: 47 IRTIREKRKNIFEGLLKKKVKPLDIAIFTRQLATMMKAGVPLVQAFEIVAEGLENPAMRD 106 Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + +Y + F ++I + G+L L ++ Sbjct: 107 VVLGLKNEVEGGNTFAGALRKYPQYFD----NLFCSLIE-SGEQSGSLEIMLDRVAVYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSEVLKQKIKK 172 >gi|30142053|gb|AAO17813.1| CfcI [Citrobacter rodentium] Length = 324 Score = 35.1 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 15/133 (11%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMVRYMPLQEVS 82 ++AGLP+ D++ + + + F + +I S++ M +P E+ Sbjct: 2 IKAGLPLYDSLQKLQKEGQALLGKGFSKRLLGLINQMKQETSVAAVFEGM---VPNSEL- 57 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + ++ G LSE L I++ ++ K+ + +I ++ Sbjct: 58 ----SVITAAERSGRLSEGFFTLVSIIKYNDELRKKIIGALI---FPLIMITLSLIVIAG 110 Query: 143 LVYFTSPGYMNVL 155 P + +V+ Sbjct: 111 YSQKVFPAFASVV 123 >gi|315653337|ref|ZP_07906259.1| competence protein [Lactobacillus iners ATCC 55195] gi|315489262|gb|EFU78902.1| competence protein [Lactobacillus iners ATCC 55195] Length = 331 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A LIGI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163 >gi|309805401|ref|ZP_07699449.1| type II secretion system F domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165286|gb|EFO67521.1| type II secretion system F domain protein [Lactobacillus iners LactinV 09V1-c] Length = 331 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A LIGI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163 >gi|312874397|ref|ZP_07734427.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2052A-d] gi|311090009|gb|EFQ48423.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2052A-d] Length = 331 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A LIGI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163 >gi|308465854|ref|XP_003095184.1| CRE-PKD-2 protein [Caenorhabditis remanei] gi|308246040|gb|EFO89992.1| CRE-PKD-2 protein [Caenorhabditis remanei] Length = 715 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 27/127 (21%) Query: 28 RAGLP---VSDAV---------AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 RAG +++A I + ++ + E RV E + + + + R Sbjct: 587 RAGYAEKDINEAFTRFNVTTMTEHIPEKMAEDIADEVARVTEQKRNYMENHRDYANLNRR 646 Query: 76 MPLQEVSFFSTV---------------ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + + S FS V +Q Q GGNL + A L+ +R+R++ + + Sbjct: 647 VDQMQESVFSIVDRIENVNVTLQTIEKQRIQQQDGGNLMDLSALLTSQVRNRESARRQTI 706 Query: 121 ALSMEAK 127 + K Sbjct: 707 TSIADKK 713 >gi|262280753|ref|ZP_06058536.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] gi|262257653|gb|EEY76388.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202] Length = 408 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F + LDI + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ F +++ + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----KLFCSLVE-SGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSELLKQKIKK 172 >gi|152980730|ref|YP_001354687.1| PilC type IV pilus assembly protein [Janthinobacterium sp. Marseille] gi|151280807|gb|ABR89217.1| PilC type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 410 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 13/162 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + +P V + + G SL+++ + Y Sbjct: 80 LATMMKAGVPLLQSFDIVAKGNDNPSVSKLVQDIRSDVETGTSLNQAFRKFPLYFD---- 135 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F ++ + G L + L L+ +KAK++ I+ + Sbjct: 136 PLFCNLVG-AGEQAGILEDLLTRLAIYKEKTLAIKAKIK---SAMFYPVSILAVAFIVTA 191 Query: 142 TLVYFTSPGYMNVLI----NDPRGHMLLGVAAAFMLIGIMVM 179 ++ + P + V + P +++ + FM+ ++ Sbjct: 192 VIMIWVVPAFKEVFTSFGADLPAPTLMVMAMSDFMVANWYII 233 >gi|184153195|ref|YP_001841536.1| hypothetical protein LAR_0540 [Lactobacillus reuteri JCM 1112] gi|183224539|dbj|BAG25056.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 356 Score = 35.1 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 G V +A+ I + + + + G S ++S+ + +++ F + Sbjct: 46 SVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-----EVKD-DLFYQL 98 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + ++ GNL++ L+ + +IL R+ + K+ +L + ++G L + L+ F Sbjct: 99 LL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILLGMLGVVICGLILFV 153 Query: 148 SPG 150 P Sbjct: 154 FPE 156 >gi|312872427|ref|ZP_07732496.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2062A-h1] gi|311092009|gb|EFQ50384.1| type II secretion system F domain protein [Lactobacillus iners LEAF 2062A-h1] Length = 331 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A LIGI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163 >gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM 44385] gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM 44385] Length = 158 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 LD++ + GLPV AV + ++ +G+ + + + Sbjct: 24 LDLVKACLSCGLPVGAAVGAVADSGGSQFVDVWKGTANRLAMGVDSDIAWALCAE---NE 80 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + F+ ++ G L+ + LS +R R A QA++ KAS ++ L FC Sbjct: 81 VLGDFARRARRSARSGAQLAADIGALSMHMRHR----ATDQAVAEAEKASVYVALPLSFC 136 Query: 140 VSTLVYFT 147 Sbjct: 137 FLPAFIAV 144 >gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1] Length = 293 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 13/137 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 ++ K+ A+F LD++ RAG A+ V + + Sbjct: 139 LRDKAKRARAEFAHAMAAYLDLVA-LRRAGNVSAEQAMEQAAQ-----VGRGWAFLRIQT 192 Query: 60 HLGLSLS------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 L S ES++R+ + L + + ++ + G ++ L + ++ LR Sbjct: 193 ALARSRVDKVPHWESLTRLTAELDLPVLDDLAAIMRQSADDGASVYATLRSRAKNLRTEL 252 Query: 114 NMKAKVQALSMEAKASA 130 A S K +A Sbjct: 253 LAAQAADANSDSEKMTA 269 >gi|114049093|ref|YP_739643.1| type II secretion system protein [Shewanella sp. MR-7] gi|113890535|gb|ABI44586.1| type II secretion system protein [Shewanella sp. MR-7] Length = 421 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+S+ RY V Sbjct: 90 IATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLRPHRRYFDDLYV 149 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 150 DLVA-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184 >gi|16081664|ref|NP_394034.1| flagellar assembly protein J [Thermoplasma acidophilum DSM 1728] gi|10639728|emb|CAC11700.1| hypothetical membrane protein [Thermoplasma acidophilum] Length = 551 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 4/104 (3%) Query: 1 MKHLIKK--RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57 +K +I + R + P + + + + + ++ + +R E +++ Sbjct: 61 LKPIIDRDNRKNDINSNIPFFITAFSSLATSDANIIEVLDILSKKEKLGYLRKELEKILN 120 Query: 58 TQH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100 G+ L+E++S + + P S F T G ++ E Sbjct: 121 LVRNWGMGLAEAMSFVAKRTPSDIFSDFLTRFGHAIDSGQDIQE 164 >gi|88858845|ref|ZP_01133486.1| type II secretion system protein [Pseudoalteromonas tunicata D2] gi|88819071|gb|EAR28885.1| type II secretion system protein [Pseudoalteromonas tunicata D2] Length = 400 Score = 35.1 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 15/119 (12%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ A+ + G + +R E V + G +L+ S+ + + Sbjct: 273 LAMMVKAGVPIDKALGLSAGNIKNHQLRREMEIVKQKVKRGSALTPSLKQTSL---YPD- 328 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 FF +++ V + G NL ++ R R+ + S K + I + + Sbjct: 329 -FFISLLEVGEESG-NLERVFNEVAN--RSRQEFE------SWTTKMTTLIEPLMILFM 377 >gi|259501490|ref|ZP_05744392.1| competence protein [Lactobacillus iners DSM 13335] gi|302191536|ref|ZP_07267790.1| Type II secretory pathway/competence component [Lactobacillus iners AB-1] gi|312871496|ref|ZP_07731590.1| type II secretion system F domain protein [Lactobacillus iners LEAF 3008A-a] gi|325913082|ref|ZP_08175453.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 60-B] gi|259167008|gb|EEW51503.1| competence protein [Lactobacillus iners DSM 13335] gi|311093016|gb|EFQ51366.1| type II secretion system F domain protein [Lactobacillus iners LEAF 3008A-a] gi|325477638|gb|EGC80779.1| type II secretion system protein F domain protein [Lactobacillus iners UPII 60-B] Length = 331 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A L+GI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLLGIFFI 163 >gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4] gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4] Length = 658 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 57/147 (38%), Gaps = 14/147 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62 + + P L I + G +S A+ + G+ R EF RV++ +G Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLAGEKK--YRREFNRVLDEIVKQDSMG 485 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118 + ++ + ++ L + S T + + + G + L L+ ++ ++ ++ Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSR 541 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 ++A + + ++ + ++ Sbjct: 542 MRAYQVLGILTPILLIATILIAIVIIS 568 >gi|223935104|ref|ZP_03627022.1| type II secretion system protein [bacterium Ellin514] gi|223895988|gb|EEF62431.1| type II secretion system protein [bacterium Ellin514] Length = 334 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 10/153 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + V +G+ + A+ +I R RV+E + G + ++++ ++P +V Sbjct: 20 IAQLVASGIGLISALQLIQRNPPSTAFRKHIERVLEHLNHGSTFTDAMRATGSWLPSFDV 79 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ G L L D ++ + + + A ++ F Sbjct: 80 Y-----LIEAAENSGRLDSVFKMLGDYYADTARLQKQ---MLSDLAYPALVLHMAVFLFP 131 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + YF + LI G ++ A F L+ Sbjct: 132 LIDYFKNGSGALFLIKT-AGVIVPLYAIIFGLL 163 >gi|148543789|ref|YP_001271159.1| type II secretion system protein [Lactobacillus reuteri DSM 20016] gi|227363231|ref|ZP_03847363.1| type II secretory pathway/competence component [Lactobacillus reuteri MM2-3] gi|325682161|ref|ZP_08161679.1| type II secretion system protein [Lactobacillus reuteri MM4-1A] gi|148530823|gb|ABQ82822.1| type II secretion system protein [Lactobacillus reuteri DSM 20016] gi|227071687|gb|EEI09978.1| type II secretory pathway/competence component [Lactobacillus reuteri MM2-3] gi|324978805|gb|EGC15754.1| type II secretion system protein [Lactobacillus reuteri MM4-1A] Length = 344 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 28 RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87 G V +A+ I + + + + G S ++S+ + +++ F + Sbjct: 34 SVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-----EVKD-DLFYQL 86 Query: 88 ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147 + ++ GNL++ L+ + +IL R+ + K+ +L + ++G L + L+ F Sbjct: 87 LL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILLGMLGVVICGLILFV 141 Query: 148 SPG 150 P Sbjct: 142 FPE 144 >gi|94309444|ref|YP_582654.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353296|gb|ABF07385.1| transcriptional regulator, LuxR-family [Cupriavidus metallidurans CH34] Length = 377 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL-----SEALANLSRILRDRKNM 115 G++ + ++ ++ P E+ +S+Q G + + AL + LR+ M Sbjct: 108 AGVAPASMMTCLIDRQPGHEIY-----LSLQRPAGADGFLEADARALDWIIPHLREAVAM 162 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + + QA S + SA ++ LPF V P N G ++ Sbjct: 163 RDRAQAASTHGRVSANLLNQLPFGVIVFTAAGEPLLANAAGEPWIGRLM 211 >gi|124514590|gb|EAY56102.1| putative type IV pilus biosynthesis protein [Leptospirillum rubarum] Length = 362 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L + + AG+PV A I QSS +R+ V+ L E++ R P Sbjct: 228 EFLTGLSAMLEAGIPVIRAFDQIRRQSSPYLRARIEPVMRIYKRTGKLGEAMDRAGTGFP 287 Query: 78 LQEVSFFSTVISVQSQLG-GNLSEALANLSRI 108 +E ++ + + G G+L AL+ SR Sbjct: 288 SRE-----IIVRLTIREGYGDLGGALSEFSRD 314 >gi|125973149|ref|YP_001037059.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC 27405] gi|256003945|ref|ZP_05428931.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM 2360] gi|281417342|ref|ZP_06248362.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20] gi|125713374|gb|ABN51866.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC 27405] gi|255992073|gb|EEU02169.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM 2360] gi|281408744|gb|EFB39002.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20] gi|316940624|gb|ADU74658.1| hypothetical protein Clo1313_1597 [Clostridium thermocellum DSM 1313] Length = 294 Score = 35.1 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 71/165 (43%), Gaps = 18/165 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56 ++ +I+K+ L DFP+ +++ RS+ + ++D V + +++ + +E + Sbjct: 137 LEKMIEKKNNNILADFPSFYNMLYYQYARSIN--IYLADVVKDFLPNANEDMAAELEVFL 194 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILR---- 110 + G ++ ++ + +PL+ + F ++ + + N+S+ L N LR Sbjct: 195 DNIEYGE--EYALKQLKKRVPLRHIIKFCDIMETRLRGYDNISQMTYLKNELYDLRVMSL 252 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + + + + A+ +I L + YF + + Sbjct: 253 EDELHRREQK----NARMQFVLIVVLAIYIVIYYYFMFVDAIRMF 293 >gi|162146307|ref|YP_001600766.1| general secretion pathway protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209543690|ref|YP_002275919.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|22128724|gb|AAM92869.1| LsdF [Gluconacetobacter diazotrophicus] gi|161784882|emb|CAP54425.1| putative general secretion pathway protein F [Gluconacetobacter diazotrophicus PAl 5] gi|209531367|gb|ACI51304.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 409 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG + A+ +V R+ V + G +L +++R P Sbjct: 79 LAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHAAMARYPGSFP---- 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ ++ GG+L+ + L+ +L + + A VQ+ Sbjct: 135 RLYIGMVR-AAEAGGDLAPTMDRLATLLERERALAATVQS 173 >gi|49480953|ref|YP_038303.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332509|gb|AAT63155.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 343 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 22/156 (14%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61 LI K + F + GL V +A+ +++ Q P + E R+ Sbjct: 204 FLILKHSHYFATQL-------SGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIA 256 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G E++ ++ E + I Q GNL+ L + S ++ ++ K K Sbjct: 257 G----EALQSIIAKSGYYEEEL--SYIITHGQANGNLAIELGDYSDLIMEKMEQKMK--- 307 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + I L C+ +V + + Sbjct: 308 -----RMLVIIQPILFTCIGGIVVLMYLAMIMPMFQ 338 >gi|149181786|ref|ZP_01860277.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1] gi|148850527|gb|EDL64686.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1] Length = 403 Score = 35.1 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 6/107 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 L ++AG+ V DA ++ Q+ S + V G LS+++++ R Sbjct: 67 FLRQFATLLQAGVTVVDATEILSSQTGSKALSKALDEVQLELKDGNPLSDALAKHRRIFE 126 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + G+L E L +L+ + K K+ + Sbjct: 127 ----PMLINMVR-AGEASGSLDETLESLATHYEKQHMTKQKIISALA 168 >gi|329919944|ref|ZP_08276846.1| type II secretion system protein F domain protein [Lactobacillus iners SPIN 1401G] gi|328936831|gb|EGG33267.1| type II secretion system protein F domain protein [Lactobacillus iners SPIN 1401G] Length = 331 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 LD + +S+ G + ++ ++ ++ V + +++ G + +S+ + Sbjct: 19 FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72 Query: 79 QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 FS +I+ Q GNL E+L+ L++I+R + K++ E A +I Sbjct: 73 -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + + F + A L+GI + Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLLGIFFI 163 >gi|171702766|dbj|BAG16351.1| myosin heavy chain [Coryphaenoides yaquinae] Length = 1933 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLG 62 +K+ +A + S+RAG + + A++ ++ V E R +E G Sbjct: 1637 AQKQLRNVQGQLKDAQVHLDDSLRAGEDLKEQAAMVERRNGLMVAEIEELRAALEQTERG 1696 Query: 63 LSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + + + L +++++ + +L +L + + +++ +N + K + Sbjct: 1697 RKVAEQELMDVSERVGLLHSQN-TSLLNTKKKLESDLVQVQGEVDDTVQEARNAEEKAKK 1755 Query: 122 LSMEAKASA 130 +A A Sbjct: 1756 AITDAAMMA 1764 >gi|260654170|ref|ZP_05859660.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33 E1] gi|260631155|gb|EEX49349.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33 E1] Length = 342 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 21/139 (15%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77 L + + + G+PV A+ + PV R+ + G S ++++ R Sbjct: 15 FLQALSQFLSCGVPVDQALKDL------PVGGALASRLRRSLLSGFSFADALER------ 62 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 E + + + G L +AL + + R+ ++ A SA + + Sbjct: 63 ENEFDPVTVALVRAGEAHGALVQALNQAADVRCRRQKLR--------SAAVSASVYPAFV 114 Query: 138 FCVSTLVYFTSPGYMNVLI 156 ++ +V G + Sbjct: 115 LALAGVVTAVMGGVVLPRF 133 >gi|223984513|ref|ZP_03634645.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM 12042] gi|223963499|gb|EEF67879.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM 12042] Length = 395 Score = 35.1 bits (80), Expect = 4.9, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 57/157 (36%), Gaps = 9/157 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G+P+ +A+ ++ +S + +++E G SL+ ++ + + P Sbjct: 67 LSAMLSSGIPLVNALEMLRQKSDKKKMKKLYAQLVEEVRKGSSLTLAMKQCQQAFPP--- 123 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + ++ G L + ++ ++ KV + ++ + Sbjct: 124 --LLIYLVQAGEMNGTLDSVMERMAGHYDKEYKLRNKV---TSALIYPIMLMVVTVAVIL 178 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ P +++++ + L + + I Sbjct: 179 ALMTSVVPSFLSMVGDMELPWNTLLLISMSNFIVAYW 215 >gi|119484401|ref|ZP_01619018.1| pilin biogenesis protein [Lyngbya sp. PCC 8106] gi|119457875|gb|EAW38998.1| pilin biogenesis protein [Lyngbya sp. PCC 8106] Length = 300 Score = 35.1 bits (80), Expect = 5.0, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 18/154 (11%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + +G + + + ++V QS D + +V LG L+ +++ RY + Sbjct: 14 ATLLNSGFSIQEIIDLLVQQSDDRLARYLNKVSTAVALGDDLASALAHAPRYFD----RW 69 Query: 84 FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143 ++I + G L E LS+I + + S+ I ++ + Sbjct: 70 TISLIQIAD-YSGALPEMCYRLSQI------AQREHDCQSLYRSVKVAAITTIVSVSGLI 122 Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + + + + V M +G + Sbjct: 123 ITLL-------YTSKSPIWVWVLVGIFLMALGFV 149 >gi|260550516|ref|ZP_05824726.1| type II secretory pathway [Acinetobacter sp. RUH2624] gi|260406431|gb|EEW99913.1| type II secretory pathway [Acinetobacter sp. RUH2624] Length = 408 Score = 35.1 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 36/100 (36%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ ++ +P E + G + + ++ + ++ Sbjct: 78 LATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQH-----F 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 F + + G L L ++ + +K K++ Sbjct: 133 DNFFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKK 172 >gi|213966025|ref|ZP_03394214.1| bacterial type II secretion system protein F domain protein [Corynebacterium amycolatum SK46] gi|213951320|gb|EEB62713.1| bacterial type II secretion system protein F domain protein [Corynebacterium amycolatum SK46] Length = 290 Score = 35.1 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V Q G +L+ L L+ R+ +++ A + + I+ SLP + Sbjct: 191 VAQQHGLSLAGLLDCARGDLQARQAHRSQTSAALAGPRMTIAILASLPVFGLIMGQAFGA 250 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 L + G ++L + + GI +I+ Sbjct: 251 SPFEFL-SRGIGGIVLVIGVGLVCAGIEWAVAIID 284 >gi|325262322|ref|ZP_08129059.1| putative general secretion pathway protein F [Clostridium sp. D5] gi|324032154|gb|EGB93432.1| putative general secretion pathway protein F [Clostridium sp. D5] Length = 399 Score = 35.1 bits (80), Expect = 5.1, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 17/178 (9%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + + V AG+ + A+ +I R + ++ G+SLSE++ Sbjct: 59 LADFSRQLSTLVGAGVTLVRALNIIANGEAIKPNERQVYEDMVRQIRQGISLSEAME--- 115 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + ++ GNL ++ + + K+ + + K +I Sbjct: 116 --AQNGAFPPLMIYMYRSAESSGNLELVSMQMALMFEKEHRLNGKISSSLVYPKILGVMI 173 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM----------LIGIMVMRL 181 + ++ V + + P +L + FM L+GI V Sbjct: 174 IGVVMVLTKFVMPQLQELFDTMETLPLPTRILNGISDFMQSYWFLAIAALLGIWVGWK 231 >gi|332995714|gb|AEF05769.1| general secretion pathway protein F [Alteromonas sp. SN2] Length = 408 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 8/160 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V + LPV +A+ + Q P + + G L++++S Sbjct: 77 MATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALSEFPSV-----F 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L L L+ R+ ++++ + + + + Sbjct: 132 DDLYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQALIYPSLMLFFAFGIVMLLL 191 Query: 142 TLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179 T+V G + + D G +L+ V+ G++++ Sbjct: 192 TVVVPKIVGQFDHMGQDLPGITQVLISVSTWLQNYGLILL 231 >gi|332702381|ref|ZP_08422469.1| general secretion pathway protein F [Desulfovibrio africanus str. Walvis Bay] gi|332552530|gb|EGJ49574.1| general secretion pathway protein F [Desulfovibrio africanus str. Walvis Bay] Length = 433 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 16/142 (11%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 KR + + + + AGLP+ + I+ Q + + +V E G SL Sbjct: 89 KRVKR--SELAATTRQMSTLLSAGLPLEQVLTAILAQIKGTALYTVLAQVRERVKEGASL 146 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S ++++ + + G L +A L+ ++ K+ Sbjct: 147 SSALAQHPGVFGTT-----YATMVQAGEQSGALELVMARLADFAEQEMELRRKI------ 195 Query: 126 AKASAWIIGSLPFCVSTLVYFT 147 SA L V + F Sbjct: 196 --WSAITYPLLMLFVGLGIVFF 215 >gi|325969465|ref|YP_004245657.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] gi|323708668|gb|ADY02155.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28] Length = 291 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 58/146 (39%), Gaps = 1/146 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 + + + + L + P + I+ + +G +S+ ++ + I + +G Sbjct: 59 YRLWRENNEILMEIPTVIRILRDGLGSGQSLSNIAEMLTKVGRGRLSGILAESIMKESMG 118 Query: 63 -LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++ E ++R+ R + ++ + ++ + G L E L + D + + Sbjct: 119 IITIKEDLTRISRELGNNYLAILAVMLDTAIKSGARLQETLDMAYKSFEDTVSYYLDKAS 178 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147 A +++ ++ ++ +V + Sbjct: 179 QVKPYLALIYVVMAIYIVLAGIVIYL 204 >gi|238791187|ref|ZP_04634826.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] gi|238729320|gb|EEQ20835.1| Type II secretion system protein [Yersinia intermedia ATCC 29909] Length = 366 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + + +R ++AGLP+ +++ ++ + P R + + + Sbjct: 19 ISYWRGERLVAVTRQL-------ATLLQAGLPLVNSLQLLAKEIDALPWRCLLQDISQQV 71 Query: 60 HLGLSLSESISRMVRYMP 77 GLSLSE+++R P Sbjct: 72 SQGLSLSEAMARYPHTFP 89 >gi|209518478|ref|ZP_03267300.1| type II secretion system protein [Burkholderia sp. H160] gi|209501111|gb|EEA01145.1| type II secretion system protein [Burkholderia sp. H160] Length = 399 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 11/157 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+ V DA+ + G +E + ++ G SLS ++ R P Sbjct: 70 LAALLDAGVGVIDALRTLSGNERREASAEVYGDLLRQLEEGHSLSAALEHASRVFP---- 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + Q GG L+ +L SR ++ +V A + ++ V Sbjct: 126 PILVACVKASEQTGG-LAGSLTRYSRNSALLHELRGRV---VSAAIYPSVLLLVGGAVVL 181 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 L+ F P + +L + G L ++ M G MV Sbjct: 182 FLLGFVVPRFATLL--EQSGRELPLLSQLLMAWGGMV 216 >gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342] gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342] Length = 401 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72 I+ + AG+ + + S P+ R + G + +++SR Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + P + + G L + L NL+ R++ + +A A +E I Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373 Query: 133 IGSLPFCVSTLVYF 146 GSL + +Y Sbjct: 374 TGSLVGILVVAMYL 387 >gi|301064212|ref|ZP_07204655.1| type IV fimbrial assembly protein PilC family protein [delta proteobacterium NaphS2] gi|300441657|gb|EFK05979.1| type IV fimbrial assembly protein PilC family protein [delta proteobacterium NaphS2] Length = 313 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77 A + + AG+ + A+ ++ Q S+P + + E+ + G SL+ ++ R R Sbjct: 74 ATRQLAILLGAGITLVAALEAMLMQVSNPAFKRVLAQTKESVNEGNSLAHALGRHPRV-- 131 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 S + + G+L L L+ + + ++ +++A Sbjct: 132 ---FSDVYINLVRAGEASGSLELVLHRLADLSEQEQALRGRLKAAMA 175 >gi|187933106|ref|YP_001887487.1| bacterial type II secretion system protein F [Clostridium botulinum B str. Eklund 17B] gi|187721259|gb|ACD22480.1| bacterial type II secretion system protein F [Clostridium botulinum B str. Eklund 17B] Length = 400 Score = 35.1 bits (80), Expect = 5.2, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 58/159 (36%), Gaps = 15/159 (9%) Query: 27 VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + AG+P+ + ++ ++ ++ + V + G LS+++ + P Sbjct: 75 LDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRKYTEVFP-----GLL 129 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF-CVSTLV 144 + + GNL + ++ + KV+ A I+G + V ++ Sbjct: 130 VSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVR----NAMIYPIILGLVAITAVVFIL 185 Query: 145 YFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVM 179 + P + ++ I P L ++A + ++ Sbjct: 186 TYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMI 224 >gi|291302163|ref|YP_003513441.1| gas vesicle synthesis GvpL/GvpF [Stackebrandtia nassauensis DSM 44728] gi|290571383|gb|ADD44348.1| Gas vesicle synthesis GvpLGvpF [Stackebrandtia nassauensis DSM 44728] Length = 256 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 32 PVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMV-------RYMPLQEV 81 + +A+ + + P + E + I + Q ++R+ P E Sbjct: 144 SLREAIRDKPPELTQPEQIELGKAIASALAQRRSADTEVLLARLAPLGAEFNVREPNGEY 203 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 F + + + G L + L +LS R N++ Sbjct: 204 VAFRVAVLLHQERTGELGDILDDLSSEWEGRLNLR 238 >gi|114331042|ref|YP_747264.1| type II secretion system protein [Nitrosomonas eutropha C91] gi|114308056|gb|ABI59299.1| type II secretion system protein [Nitrosomonas eutropha C91] Length = 406 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A ++ S+ V + G SL+ + + Y Sbjct: 75 LATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSEVETGSSLANAFKKHPLYFDS--- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G L L L+ + +K K+++ + + + + Sbjct: 132 -LFCN-LVAAGEAAGILDNLLDRLATYKEKIQAIKGKIKSALFYPVSIIVVAFIITAVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V D L+ + + + Sbjct: 190 IFVIPAFKELFQGFGADLPAPTLMVMTISDFFVAYWW 226 >gi|171702768|dbj|BAG16352.1| myosin heavy chain [Coryphaenoides armatus] Length = 1933 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLG 62 +K+ +A + S+RAG + + A++ ++ V E R +E G Sbjct: 1637 AQKQLRNVQGQLKDAQVHLDDSLRAGEDLKEQAAMVERRNGLMVAEIEELRAALEQTERG 1696 Query: 63 LSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + + + + L +++++ + +L +L + + +++ +N + K + Sbjct: 1697 RKVAEQELMDVSERVGLLHSQN-TSLLNTKKKLESDLVQVQGEVDDTVQEARNAEEKAKK 1755 Query: 122 LSMEAKASA 130 +A A Sbjct: 1756 AITDAAMMA 1764 >gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51] gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 256 Score = 35.1 bits (80), Expect = 5.3, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + K + P + I + ++A V + + + +E + S Sbjct: 107 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFAAELDILTADMRS-SSYEA 165 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + G + L+ ++ + + K QA+ + K Sbjct: 166 ALTRFEARFNSPMLSDITRGL-IGVLRGDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPK 224 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + L + T + Sbjct: 225 IRVFSFAMLMCFLMTYMAII 244 >gi|223940801|ref|ZP_03632634.1| Type II secretory pathway component PulF-like protein [bacterium Ellin514] gi|223890531|gb|EEF57059.1| Type II secretory pathway component PulF-like protein [bacterium Ellin514] Length = 386 Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 15/149 (10%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ A+F LD++ ++R G V + + I + F + G+ Sbjct: 40 LKRQERARF------FLDLLDTALREGKRVENVLISISESRDRSMGVRFHLLAAYLETGM 93 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ ++ R +P Q IS ++GG + + L + K+ +++ Q Sbjct: 94 RLGEALDKVPRLLPTQ--------ISTMLKVGGQIGDIGKMLPACRQLLKDAQSQTQGAI 145 Query: 124 MEAKASAWIIGSLPFCVSTLV-YFTSPGY 151 A++I + + ++ F P + Sbjct: 146 NYLVLLAFVITPMGISIFGVLETFVMPQF 174 >gi|30248610|ref|NP_840680.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718] gi|30180205|emb|CAD84507.1| Bacterial type II secretion system protein [Nitrosomonas europaea ATCC 19718] Length = 406 Score = 34.7 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 6/157 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++G+P+ A ++ S+ V + G SL+ + + Y Sbjct: 75 LATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSDVETGNSLANAFRKHPLYFDS--- 131 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G L L L+ + +K K+++ + + + + Sbjct: 132 -LFCN-LVAAGEAAGILDSLLDRLATYKEKIQAIKGKIKSALFYPISIIVVAFVITAVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 V D L+ +A + + Sbjct: 190 IFVIPAFKELFQGFGADLPAPTLMVMAISDFFVDYWW 226 >gi|326794279|ref|YP_004312099.1| general secretion pathway protein F [Marinomonas mediterranea MMB-1] gi|326545043|gb|ADZ90263.1| general secretion pathway protein F [Marinomonas mediterranea MMB-1] Length = 400 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + AG+P+ +A++ + Q + +RS + G L+ +++ + P+ Sbjct: 70 LATLIDAGMPIEEALSGVAQQTTKQRIRSMLLAIRSKVLEGHPLASALAEYPKAFPI--- 126 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F I + GG L + L L+ + ++ Q L M A + V Sbjct: 127 -LFRASIKAGEESGG-LPQVLMQLADY---SERVRGNQQKLQMAMLYPAILTIVAISIVV 181 Query: 142 TLVYFTSPGYMNVL 155 L+ P ++V Sbjct: 182 FLLGSVMPDIVSVF 195 >gi|241763208|ref|ZP_04761267.1| type II secretion system protein [Acidovorax delafieldii 2AN] gi|241367707|gb|EER61973.1| type II secretion system protein [Acidovorax delafieldii 2AN] Length = 316 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G + + ++S+ R E S + + GNL L L+ L +R+ ++A Sbjct: 22 EVNAGATFARALSQHPR-----EFSDIYCAVIGAGEHSGNLGLVLERLADDLEERQALQA 76 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 K+ A A + V LV + P +V R L VA Sbjct: 77 KLVG---AALYPAIVTLVAIAIVLFLVSYVVPQVASVFAGTKRALPFLTVAML 126 >gi|238897818|ref|YP_002923497.1| component in type IV pilin biogenesis, transmembrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465575|gb|ACQ67349.1| component in type IV pilin biogenesis, transmembrane protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 405 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 8/74 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60 + K+ F ++AGLP+ +++ ++ + P+ R + + + Sbjct: 54 SYRQKEYLINFTRQL-------ATLLQAGLPLVNSLQLLAKDMNIPIWRCILQNISQEVS 106 Query: 61 LGLSLSESISRMVR 74 G S++I + Sbjct: 107 RGEPFSDAIRHYPK 120 >gi|218234987|ref|YP_002369047.1| comG operon protein 2 [Bacillus cereus B4264] gi|218162944|gb|ACK62936.1| comG operon protein 2 [Bacillus cereus B4264] Length = 343 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + G + A+ + Q + + +R+IE G SL +S ++ + + F++ Sbjct: 22 LEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDMLSYLFYA- 80 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + G++S AL S +L + + + + + + + F ++ Sbjct: 81 ------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLFIFKLILL 133 >gi|83589194|ref|YP_429203.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073] gi|83572108|gb|ABC18660.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073] Length = 256 Score = 34.7 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 7/147 (4%) Query: 6 KKRTAKFLDDFPNALDII--VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 KK K L+ P+ L+ I R V G+ +A+A+ + P+R E +R ++ Sbjct: 101 KKWQGKVLEGIPSLLNFIPAFREVE-GVTPREALALSLPFIPRPLRDELKRALDKIARTG 159 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + + V ++ + A+LS + +K ++ A + Sbjct: 160 DVVGAFDELAGKVKHPLVDAVCFRLATSWTTTAG-GDIFADLSDQM---AGLKEEMAARA 215 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPG 150 K + + + + + + F PG Sbjct: 216 TTGKTAIFALVCVLGLIGMALEFGYPG 242 >gi|289549030|ref|YP_003474018.1| type II secretion system F domain protein [Thermocrinis albus DSM 14484] gi|289182647|gb|ADC89891.1| Type II secretion system F domain protein [Thermocrinis albus DSM 14484] Length = 384 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 7/92 (7%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +R+G+P++ AV + Q D + ++ E+ G ++ E+ + F Sbjct: 66 LRSGMPLAQAVESLALQ-EDKLSGPLLQIKESLEKGNAIPEAFASAGV------FPSFLI 118 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + ++ G NL + L + L+ +KAK Sbjct: 119 EMLRAAERGENLEKILETAGQFLQRMGQIKAK 150 >gi|284166396|ref|YP_003404675.1| hypothetical protein Htur_3137 [Haloterrigena turkmenica DSM 5511] gi|284016051|gb|ADB62002.1| protein of unknown function DUF6 transmembrane [Haloterrigena turkmenica DSM 5511] Length = 331 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 L + + S + + + SP +L D G +L A +G +++ Sbjct: 115 AVLLSDERLSRRGAVGMGLGLLGVALVVSPDPAALLGGDAFGRAILFAGAICAALGAVLI 174 Query: 180 RL 181 R Sbjct: 175 RR 176 >gi|238786737|ref|ZP_04630538.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] gi|238725105|gb|EEQ16744.1| Type II secretion system protein [Yersinia frederiksenii ATCC 33641] Length = 365 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 31/180 (17%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGLP+ +++ ++ + P + + + + G SLSE I+R P Sbjct: 34 LATLLQAGLPLVNSLQLLAKEMDTLPWQCLLQEISQQVSQGQSLSEVIARYPNTFP---- 89 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPFCV 140 +S VI++ G ++ L L + + K+Q ++A K ++ Sbjct: 90 RLYSPVIAM-----GEMTGNLEQCCVQLVHHQERQQKLQKKVVKALKYPIFVCVIALTVS 144 Query: 141 STLVYFTSPGY-------------------MNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ P + + G + ++ A + IG + +R Sbjct: 145 ILMLVMVLPEFAKIYQSFDTPLPVLTATLLLMSAFITAHG-PFIALSLASLGIGYLYIRK 203 >gi|126666453|ref|ZP_01737432.1| general secretion pathway protein F [Marinobacter sp. ELB17] gi|126629254|gb|EAZ99872.1| general secretion pathway protein F [Marinobacter sp. ELB17] Length = 403 Score = 34.7 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 23 IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +G+P+ DA+ + +D +R E + G +L ++ + + P+ + Sbjct: 276 LSILTTSGVPLVDAMRIAGEVLGNDYLRQELKDAARKVSEGGALHRALDQSGYFPPMM-L 334 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 ++ + G L L +R+ Q +++AK +A + P + Sbjct: 335 HMIASG-----EASGELDSMLERTARM-----------QENTLQAKIAAIVGLFEPLMLL 378 Query: 142 TL 143 + Sbjct: 379 LM 380 >gi|226309739|ref|YP_002769633.1| hypothetical protein BBR47_01520 [Brevibacillus brevis NBRC 100599] gi|226092687|dbj|BAH41129.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 299 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 5/119 (4%) Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + + F+T IS + ++ L L+ + +++ K + + Sbjct: 179 AVEKFAQRLDHPWAFDFATYISSGLEGETEDIQSPLNRLTNEMFVQQDEKHERDSEIYSI 238 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181 S I+ ++ C+ + P G +L +AA +L+ + R Sbjct: 239 WISLLIVIAICICLIPYNQGLLQDSYRLYFYTPDGQAILAIAATVWTFSILLAFIWGRR 297 >gi|330831362|ref|YP_004394314.1| GspF family protein [Aeromonas veronii B565] gi|328806498|gb|AEB51697.1| GspF family protein [Aeromonas veronii B565] Length = 406 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + RAG+P+ A+A + + P++ + E G LS S+ + Sbjct: 74 MYALTRAGIPILRAIAGLEEGTHSKPLKRALHSLGEDLGNGRPLSSSMQAHPKV-----F 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S I + G L EA L+ + +++ + ++++ ++ + Sbjct: 129 SSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKT---AMRYPSFVMIAIGIAMV 185 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 186 ILNIMVIPVFAGMF 199 >gi|113968763|ref|YP_732556.1| type II secretion system protein [Shewanella sp. MR-4] gi|113883447|gb|ABI37499.1| type II secretion system protein [Shewanella sp. MR-4] Length = 421 Score = 34.7 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+S+ RY V Sbjct: 90 IATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLRPHRRYFDDLYV 149 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 150 DLVA-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184 >gi|294139027|ref|YP_003555005.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12] gi|293325496|dbj|BAJ00227.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12] Length = 423 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 6/134 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+++ Q Sbjct: 93 IATMLSAGVPLVTTIEMLGRGHEKVKMRELLGTILNDVQAGIPLSDAL-----RPHRQYF 147 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G+L ++ + +K+K++ A + + + Sbjct: 148 DDLYVDLVAAGEHSGSLDAVFDRVATYREKTEALKSKIKKAMFYPAAVVVVAFGVTALLL 207 Query: 142 TLVYFTSPGYMNVL 155 V + Sbjct: 208 LFVVPQFEEIFSGF 221 >gi|21234167|ref|NP_639745.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|13620653|emb|CAC36692.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 297 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEV 81 + R +G + A+ + + + R+V L G++ +++ ++ + + E+ Sbjct: 168 LARVANSGA--AQALTDTARVGENFIFNRMRQVFHQADLAGVTPWDALKQLGEELDIPEL 225 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + +++ G + L +R LR K +A SA +I + F V Sbjct: 226 TRPADTLALAGD-GAAVYTTLQAQARQLRIALLSDQKAKANEA----SAAMILPVTFGVI 280 Query: 142 TLVYFTSPGYMNVLINDPRG 161 ++ F M L G Sbjct: 281 LMITFV----MIPLTITILG 296 >gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax volcanii DS2] Length = 639 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 16/189 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59 + L R P A+ + + + + FR V+ T Sbjct: 140 LGWLATARRENIERTLPGAVRYLHVLSSGSDGPRGMLRRVAETDAYGETAIAFRSVLNTA 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL----SRILRDRKNM 115 L +++E + R+ R P + + + + G S+AL N SR+L R++ Sbjct: 200 SLTGNVNEGLRRVARDTPSE--GMLAPFLLKFREHAGQGSDALRNYLRMESRMLGHRQDR 257 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVST----LVYFTSPGYMNVLINDPRGHM----LLGV 167 + +E A +I+ + + ++ +PG + P G ++ Sbjct: 258 ARERAEGFLELLAELFIVLLVLPSLLVIVLTVMSVIAPGLSAPV-ATPLGQTTTRGVVVY 316 Query: 168 AAAFMLIGI 176 ++A ++G+ Sbjct: 317 SSAAFIVGV 325 >gi|227891631|ref|ZP_04009436.1| type II secretory pathway/competence component protein [Lactobacillus salivarius ATCC 11741] gi|227866547|gb|EEJ73968.1| type II secretory pathway/competence component protein [Lactobacillus salivarius ATCC 11741] Length = 357 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 25/157 (15%) Query: 1 MKHLIK--KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58 +KHL+K K+ I+ + AG + ++ I EF V Sbjct: 15 LKHLLKDNKKVWSLKKQ-AIFFSILSDLLSAGFSLRQSLISIQNIMP-----EFYSVSHK 68 Query: 59 QH----LGLSLSESI-SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 +G +S+++ + + Q + + Q G + +++ L +L R Sbjct: 69 VKKNLLMGTKISDALKENISKSTYYQ--------LLIAEQHG-EMEKSIKQLGSLLERRV 119 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 + K+++L + + L + + ++ P Sbjct: 120 EQQNKLKSLMV---YPMILFFMLIIIMLGIKFWLKPT 153 >gi|189424512|ref|YP_001951689.1| type II secretion system protein [Geobacter lovleyi SZ] gi|189420771|gb|ACD95169.1| type II secretion system protein [Geobacter lovleyi SZ] Length = 405 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 11/154 (7%) Query: 23 IVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79 +V +++G+P V DA+ ++ +V E G +LS ++ R R P Sbjct: 73 LVVLLKSGMPIVPVLDAILEHRRKAGGTFAQVLGQVREDVKGGAALSTALERHGRLFPP- 131 Query: 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + ++V + G + + + L+ + ++ K L + ++ Sbjct: 132 --LYLASV--RAGERTGEVPQTIRRYILFLKRSEELRKK---LISALIYPSILVVVAVLA 184 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + L+ + P + +V + LL Sbjct: 185 IMLLLIYVVPTFSHVYADSGSQLPLLTRLLISFT 218 >gi|146305723|ref|YP_001186188.1| type II secretion system protein [Pseudomonas mendocina ymp] gi|145573924|gb|ABP83456.1| type II secretion system protein [Pseudomonas mendocina ymp] Length = 333 Score = 34.7 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 D N D + + AG+PV DA+ Q + +R +F + G SL+ + Sbjct: 193 RADLSNFCDSLGLLLEAGMPVLDALPRACAAQGNARLRRDFANLAPRVAAGQSLARAFDA 252 Query: 72 MV 73 + Sbjct: 253 LA 254 >gi|326204376|ref|ZP_08194234.1| hypothetical protein Cpap_0858 [Clostridium papyrosolvens DSM 2782] gi|325985408|gb|EGD46246.1| hypothetical protein Cpap_0858 [Clostridium papyrosolvens DSM 2782] Length = 311 Score = 34.7 bits (79), Expect = 5.9, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 4/119 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LI + P +D + + A+ + + + ++ Sbjct: 132 LSLLIDLHKYRMNTQIPKLIDEFRSAFLEHNKIKPALRECSKNVNKNMGRLMLQAADS-- 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + + M + S F ++ + GG+L L L+ + + +++ K Sbjct: 190 --SDTQKVLGNMRDRIDNIWFSIFVVMLQNYKENGGDLIGQLYKLNNTMSTQLSIEKKK 246 >gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp. At-9b] gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b] Length = 399 Score = 34.7 bits (79), Expect = 6.0, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMV 73 DI+ + RAGL + ++ + + + R ++ + G L +++ + Sbjct: 264 QLTQIFDILQLTQRAGLTLLQSLQAVEVTLTSLLWREAISQLQQHISAGAPLHQALHQHQ 323 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + PL + +I V ++G L L+ L+ R+ +A+ A ++E I Sbjct: 324 LFTPLC-----AQLIKVGEEVGA-LDVMLSRLAEWHRENTLGRAESLAAALEPMMMVVIG 377 Query: 134 GSLPFCVSTL 143 G + V + Sbjct: 378 GIVGTLVIAM 387 >gi|294054977|ref|YP_003548635.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] gi|293614310|gb|ADE54465.1| Type II secretion system F domain protein [Coraliomargarita akajimensis DSM 45221] Length = 420 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72 ++ + ++AGLP+ A+ V++ Q + ++ ++ + G S S+ +++ Sbjct: 78 EELTTFTRQLATLLQAGLPLLRALEVMIRQERNLRFKAVLEQIADQVKSGNSFSDGLAQH 137 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + + +I + GG L L+ L+ + Sbjct: 138 PKVFD----RLYINMIK-AGEAGGVLDVVLSRLAGFME 170 >gi|196231664|ref|ZP_03130521.1| type II secretion system protein [Chthoniobacter flavus Ellin428] gi|196224136|gb|EDY18649.1| type II secretion system protein [Chthoniobacter flavus Ellin428] Length = 326 Score = 34.7 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + VR G+P A+ + + R ++ G ++ E+ + M + E Sbjct: 15 LAQLVRQGIPFPAALNKLAPGARGDTRRLIEAARKSLASGHTVGEAFTAMPSVVSSLE-- 72 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + + G L L +LS + A+ + L F + Sbjct: 73 ---SAVVSAVEKSGQLDRGLRDLSEYFAALDKARRDFVMRC------AYPVFMLHFGILL 123 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 L T G L V A +I Sbjct: 124 LNAPTLFTQSAAAYGRQVGTAFLFVYACVAVIAF 157 >gi|306835046|ref|ZP_07468091.1| membrane protein [Corynebacterium accolens ATCC 49726] gi|304569071|gb|EFM44591.1| membrane protein [Corynebacterium accolens ATCC 49726] Length = 259 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 57/185 (30%), Gaps = 7/185 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQ 59 + + + + ++ +RAG ++ A++ + + Sbjct: 74 MAARTRRRGREALAGYFGVVTADLRAGATLASALSRGAESLPATTPRDMSAALESTATAV 133 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G ++S E++ ++ + +Q G ++ + + Sbjct: 134 ARGAPPHVALSGAHA---DAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQST 190 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A+A ++ LP + + L+ G +LL + G Sbjct: 191 AAGLQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWS 250 Query: 180 RLMIN 184 R++I Sbjct: 251 RVIIR 255 >gi|86159262|ref|YP_466047.1| DNA topoisomerase VI subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|85775773|gb|ABC82610.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 604 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSES 68 V+ A+ IV +S DP++ EF R+ + G L ++ Sbjct: 543 VAQAIGKIVKRSPDPIKREFLRLADQVTEQEGAGEGLDDA 582 >gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25] gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25] Length = 658 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 56/147 (38%), Gaps = 14/147 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62 + + P L I + G +S A+ + G+ R EF RV++ +G Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLAGEKK--YRREFNRVLDEIVKQDSMG 485 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118 + ++ + ++ L + S T + + + G + L L+ ++ ++ ++ Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSR 541 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145 ++A + + ++ ++ Sbjct: 542 MRAYQVLGILTPILLIVTILIAIVIIS 568 >gi|160942275|ref|ZP_02089584.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC BAA-613] gi|158434832|gb|EDP12599.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC BAA-613] Length = 293 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 47/144 (32%), Gaps = 2/144 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+ K+ + + P + I + ++ V V + + +E + Sbjct: 140 LLAKKRGELEGELPRFVSTIEQELKNSRDVLSIVENYKKNAGEEFANELEILAADMRS-S 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++R + +S + + G + + LS + + + K +A Sbjct: 199 SYEAALTRFEARINSPMLSDVVRGL-IGVLRGDDGAMYFQMLSHDFKQMELQRLKKEAQK 257 Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147 + K + L + T + Sbjct: 258 IPPKIRVFSFLMLVCFIVTYLAII 281 >gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65] gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65] Length = 404 Score = 34.7 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 34/182 (18%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78 + + AGLP+ +A+ Q+ + + +I G SL+ +++ P Sbjct: 74 LSTLIGAGLPIEEALRATADQTE---KRRIKTMIMDVRSKVLEGHSLANALNDFSYAFPQ 130 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 + G+L L L+ + + + K++ ++ + ++ Sbjct: 131 -----LYRATVAAGEHAGHLDTVLNRLADYMERAQENQQKIKLAAVYPIILCIVAIAIVV 185 Query: 139 CVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFMLIGIMVM 179 + T V P + V G L + ++ GI+ M Sbjct: 186 GLLTYVV---PDIVEVFVKNGQELPVLTRVMISSSDFLQANGIYLFILLVFAIIGGIVAM 242 Query: 180 RL 181 + Sbjct: 243 KK 244 >gi|330501800|ref|YP_004378669.1| pilin biogenesis protein [Pseudomonas mendocina NK-01] gi|328916086|gb|AEB56917.1| pilin biogenesis protein [Pseudomonas mendocina NK-01] Length = 406 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I +P +R + + G S + S+ + + Sbjct: 75 MATMMKAGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFASSLRKKPEF-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L L ++ + +KAK++ Sbjct: 130 DDLYCNLVDSGEQSGALETLLDRIATYKEKTEALKAKIKK 169 >gi|146305809|ref|YP_001186274.1| type II secretion system protein [Pseudomonas mendocina ymp] gi|145574010|gb|ABP83542.1| type II secretion system protein [Pseudomonas mendocina ymp] Length = 405 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + +I +P +R V + G S + S+ + Y E+ Sbjct: 75 MATMMKAGVPLLQSFDIIGEGFDNPNMRKLIDEVKQEVAAGNSFATSLRKKPEYFD--EL 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G L L ++ + +KAK++ Sbjct: 133 Y---CNLVESGEQAGALENLLDRIATYKEKTEALKAKIKK 169 >gi|323493655|ref|ZP_08098776.1| type IV pilin biogenesis protein PilC [Vibrio brasiliensis LMG 20546] gi|323312178|gb|EGA65321.1| type IV pilin biogenesis protein PilC [Vibrio brasiliensis LMG 20546] Length = 418 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + G+P+ + ++ ++S R+ GL LS+++ Sbjct: 87 ITTMLITGMPMISILKLVSAHHQKGEMKSILNRISAKIEAGLPLSQAM-----RASSPHF 141 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L E ++ + K+ + K + S ++ + C Sbjct: 142 DALYCDLVATGEQTGKLVEVFERIA--IYREKSQRLKTNIIKALIYPSMVMLTAFVVC-Y 198 Query: 142 TLVYFTSPGYMNVL 155 ++ P + ++ Sbjct: 199 LMLTLVIPQFESIF 212 >gi|305664053|ref|YP_003860341.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] gi|304378622|gb|ADM28461.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230] Length = 297 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 7/137 (5%) Query: 20 LDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 L I +GL + I +G+S E R G+ + + S + R Sbjct: 123 LMAISLLSASGLDIYSVFERIPNILGESYKYFSIEIDRARYMVRAGIPIDKVFSDIARIT 182 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI---- 132 P Q + + +S S++GG+L + + + R ++ + A ++ ++ Sbjct: 183 PSQILRELFSGLSSFSRVGGDLGKVVEGVLTRYISRYELEVERIANTLSVYTEIYVAISL 242 Query: 133 IGSLPFCVSTLVYFTSP 149 + + +++ P Sbjct: 243 LIPVLIGSLAMIFLIYP 259 >gi|300715324|ref|YP_003740127.1| outer membrane protein export (MTB) system (type II secretion system) [Erwinia billingiae Eb661] gi|299061160|emb|CAX58267.1| outer membrane protein export (MTB) system (Type II secretion system) [Erwinia billingiae Eb661] Length = 399 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 16/155 (10%) Query: 7 KRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 KR + + ++AGL +S ++ ++ + P ++ FR++ G Sbjct: 49 KRYRAREWQWAQKIAFFRQLATLLKAGLTLSASLNLLAEEHPHPGWQALFRQLENNVAEG 108 Query: 63 LSLSESISRMVRYMP--LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + S++++ + P + + +L G + E L+ ++ ++ KV Sbjct: 109 MPFSDALALWPQVFPPLFPALMYVG-------ELTGRIDECCLQLACQQERQQQLQKKV- 160 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + + +I+ ++ F P +M+V Sbjct: 161 --TKALRYPLFILSLALLVSIGMLVFVLPEFMSVY 193 >gi|240141997|ref|YP_002966507.1| putative Type II secretion system protein [Methylobacterium extorquens AM1] gi|240011941|gb|ACS43166.1| putative Type II secretion system protein [Methylobacterium extorquens AM1] Length = 411 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 57/128 (44%), Gaps = 9/128 (7%) Query: 24 VRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 R + GL ++DAVA+ + + V H G+ L +++ + + Sbjct: 80 ARCLDVGLTIADAVAISADGRMGTKLGRTADAVRTALHQGVPLHRAMAEHTPRLTSAAL- 138 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 +VI V + G L+ L++L+ L ++ +++++++ + A+++ + V+ Sbjct: 139 ---SVIEVGERSG-QLASTLSHLTERLGNQGRLRSEIRSALV---YPAFVVLTAFAVVAI 191 Query: 143 LVYFTSPG 150 L+ P Sbjct: 192 LLQAVVPA 199 >gi|190576223|ref|YP_001974068.1| putative AraC family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190014145|emb|CAQ47784.1| putative AraC-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 275 Score = 34.7 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 13/109 (11%) Query: 1 MKHLIKKRTAKFLDDFPN-ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 +++L +R + A DI+ ++ AG A + RV E Sbjct: 48 VRYLRGRRLTAAAQRLADGAGDILQVALGAGYTTHAAFTRAFNE---QFGQTPERVREQG 104 Query: 60 HLGLSLSESIS---------RMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 GL+L ++I R + + GG + Sbjct: 105 TDGLALVQAIRVDDAPAPCGEAPRLLDTPAFQVAGIGMRHTRDSGGAIP 153 >gi|330944282|gb|EGH46349.1| type II secretion system protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 363 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I +RA + A+ + ++ +R +G + E++ P Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F V+S + S A+ S + ++K + + S +IG L Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344 Query: 139 CVSTLVYFTSPGYMNVLIN 157 V Y + + + Sbjct: 345 LVMVGAYSMTGNATQGMTH 363 >gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM 8271] gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM 8271] Length = 290 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + K + P + I + ++A V + + + +E + S Sbjct: 141 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFSAELDILTADMRS-SSYEA 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++R +S + + + G + L+ ++ + + K QA+ + K Sbjct: 200 ALTRFESRFNSPMLSDITRGL-IGVLRGDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPK 258 Query: 128 ASAWIIGSLPFCVSTLVYFT 147 + L + T + Sbjct: 259 IRVFSFAMLMCFLMTYMAII 278 >gi|156741387|ref|YP_001431516.1| hypothetical protein Rcas_1403 [Roseiflexus castenholzii DSM 13941] gi|156232715|gb|ABU57498.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941] Length = 316 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 62/187 (33%), Gaps = 15/187 (8%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ + P + + +RAG + A+ ++ P+++E+ +E LG Sbjct: 124 QRYATRIDATLPATVGRLEAQLRAGSGLQPAIEKVIADMPASPLKAEWSWFLE--RLGQP 181 Query: 65 LSE--------SISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNM 115 L+ + + P + + F + + + Q L + + ++ Sbjct: 182 LAAGALATATMVCAALRAQTPSRRHATFLSHLEIAIDQPHAALVQRVRAAYEAMQASDRR 241 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFM 172 + + + + + + + ++ ++ G +L + Sbjct: 242 ASMLATELAQMRNTGIALFLINVGITLYLFIVQHERFLTAYRSNIGVGVGAVLALVVGAP 301 Query: 173 LIGIMVM 179 LIG ++ Sbjct: 302 LIGGYLL 308 >gi|66044760|ref|YP_234601.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63255467|gb|AAY36563.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 363 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I +RA + A+ + ++ +R +G + E++ P Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F V+S + S A+ S + ++K + + S +IG L Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344 Query: 139 CVSTLVYFTSPGYMNVLIN 157 V Y + + + Sbjct: 345 LVMVGAYSMTGNATQGMTH 363 >gi|226312375|ref|YP_002772269.1| tyrocidine synthetase II [Brevibacillus brevis NBRC 100599] gi|226095323|dbj|BAH43765.1| tyrocidine synthetase II [Brevibacillus brevis NBRC 100599] Length = 3589 Score = 34.7 bits (79), Expect = 6.4, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 8/136 (5%) Query: 35 DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94 A+ ++ + + EF ++ + +V P Q + V + Sbjct: 2517 QAIEMLTAEEKQLLLVEFNHTDREYTEDQTIQQLFEELVANTPDQT----AIVFEEKQMT 2572 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY--- 151 L+E L+ +LR++ +++ + +E I P Y Sbjct: 2573 YEELNERANQLATVLREKGLGPSQIVVMMVERSLEMVIATLAILKAGGAFLPVDPDYPEE 2632 Query: 152 -MNVLINDPRGHMLLG 166 + +I D + ++L Sbjct: 2633 RIRYMIEDSQAKLVLT 2648 >gi|229152442|ref|ZP_04280634.1| ComG operon protein 2 [Bacillus cereus m1550] gi|228631050|gb|EEK87687.1| ComG operon protein 2 [Bacillus cereus m1550] Length = 330 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 + G + A+ + Q + + +R+IE G SL +S ++ + + F++ Sbjct: 9 LEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDMLSYLFYA- 67 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 + G++S AL S +L + + + + + + + F ++ Sbjct: 68 ------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLFIFKLILL 120 >gi|117918875|ref|YP_868067.1| type II secretion system protein [Shewanella sp. ANA-3] gi|117611207|gb|ABK46661.1| type II secretion system protein [Shewanella sp. ANA-3] Length = 423 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I + AG+P+ + ++ +R ++ G+ LS+S+ RY V Sbjct: 91 IATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYV 150 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + + G+L ++ + +K+K++ Sbjct: 151 DLVA-----AGEHSGSLDVVFDRIATYREKSEALKSKIKK 185 >gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 299 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +R + LD+ V S+ G V A+ V S+ R + Sbjct: 144 VRKAAAERRRQMRHTLTLILDLTVISLAGGAGVQQALTDAVQAPHGWAASKLRHALRVAQ 203 Query: 61 LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 L S + + + +++ + +++ + +S+ G + +L Sbjct: 204 LTRTSPWQHLGDLGQHLQVSDLTELAATLSLAGTEGAKVRASL 246 >gi|169334873|ref|ZP_02862066.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM 17244] gi|169257611|gb|EDS71577.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM 17244] Length = 345 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ ++ +GL + +A+ + + ++D + + + + G+S S++++ + + + Sbjct: 217 VMAMALGSGLEIDEALDLSMETTNDIDMGEKVKSLKGRMSEGMSFSDAVNEVKLLSEI-D 275 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 F S + G++ + + ++ R + K + +L + + S I+ ++ Sbjct: 276 ARFLSVGVK-----TGSVDKVMKQIAD--RSEEEAKEHINSLISKVEPSLVIVLAVITGA 328 Query: 141 STLVYFTSPGYMNVLIN 157 L + LI Sbjct: 329 ILLSVMIPLANIISLIG 345 >gi|121607680|ref|YP_995487.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121552320|gb|ABM56469.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 416 Score = 34.7 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +RAGL + +A+ V++ S P V + + +++ G LS +++ Sbjct: 86 LAIMLRAGLALDNALRVLIDMSHKPSVTALVQALLDAVKGGTPLSRALAAHG-----PLF 140 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 F + + G +S L L + ++ ++ V + + Sbjct: 141 GDFYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISAT 182 >gi|170738264|ref|YP_001779524.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820452|gb|ACA95034.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 358 Score = 34.7 bits (79), Expect = 6.7, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 9/129 (6%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L AG V ++A + + +R + GL++ E++ P Sbjct: 223 FLTAFASMQAAGFTVEKSLAQLADHAKPWLRERIDDTLFGVKSGLNVGEAMRMSGHRFPS 282 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLS----RILRDRKNMKAKVQALSMEAKASAWIIG 134 QE+ + V +Q G +E+L L+ +R + + +V A ++G Sbjct: 283 QEI---VDDLCVYAQYKG-FAESLKTLADEWIETGVERVSAQMRVLNGVAIVAM-AIMLG 337 Query: 135 SLPFCVSTL 143 L + Sbjct: 338 MLIVGFFGI 346 >gi|254293818|ref|YP_003059841.1| general secretion pathway protein F [Hirschia baltica ATCC 49814] gi|254042349|gb|ACT59144.1| general secretion pathway protein F [Hirschia baltica ATCC 49814] Length = 401 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + +G PV +A+A + S + VRS V G LS+++S Sbjct: 70 LAMLISSGTPVEEALAAVGDTSRKNAVRSVLADVRSNVVEGQPLSDAMSS-----QSSAF 124 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 T I + G L +A L+ + M+ KV Sbjct: 125 PPLYTSIVAAGESAGALDAVMARLADYQEKSEEMRGKV 162 >gi|254253697|ref|ZP_04947014.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] gi|124898342|gb|EAY70185.1| Type II secretory pathway component PulF [Burkholderia dolosa AUO158] Length = 412 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L AG V ++A + + +R ++ GL++ E++ P Sbjct: 277 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 336 Query: 79 QEV 81 +E+ Sbjct: 337 EEI 339 >gi|14590458|ref|NP_142526.1| flagellar assembly protein J [Pyrococcus horikoshii OT3] gi|3256965|dbj|BAA29648.1| 573aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 573 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 6/164 (3%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESI 69 P + + + +D + V+ + +E ++V L SL E+ Sbjct: 85 INSKLPYFITYFAVLSTSEIGRTDILRVLAKDPKLGAIANEMKKVYIIVDKLHRSLPEAF 144 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + P + + F ++ G L + L + + D + ++ Sbjct: 145 RFLAKRTPSKVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDLDIFKE 204 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + + + P +L G + L +A + Sbjct: 205 IYESVIISIVFAGAFMIIGP----ILTGQNIGRLALYLAFLILA 244 >gi|88861066|ref|ZP_01135701.1| putative general secretion pathway protein F [Pseudoalteromonas tunicata D2] gi|88816994|gb|EAR26814.1| putative general secretion pathway protein F [Pseudoalteromonas tunicata D2] Length = 405 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++ LPV AV + QS P ++ V G +L++ + Sbjct: 74 LATLIQSALPVEAAVLAVAEQSEKPRLKRMLMAVRSKVVEGYTLADGLGEFPHIFD---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + F ++++ + G+L + L L+ R++M++++ +A ++ + Sbjct: 130 NLFRSMVA-AGEKSGHLDQVLNRLADYTEQRQHMRSQI----TQAMVYPTVLVVFAIGIV 184 Query: 142 TLVY 145 ++ Sbjct: 185 AILL 188 >gi|330897502|gb|EGH28921.1| large subunit of terminal oxygenase component [Pseudomonas syringae pv. japonica str. M301072PT] Length = 281 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 SI M P+ E+ + VQ + N NL + R ++ V A A+ Sbjct: 173 SIDNMCDRSPVGELEVAGGIFRVQQRS--NWKVFYENLHDTMHARVTHESSVDA----AR 226 Query: 128 ASAWIIGSLPFCVSTL 143 A IG +PF + + Sbjct: 227 EQADAIGEMPFELLIM 242 >gi|167771226|ref|ZP_02443279.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM 17241] gi|283795333|ref|ZP_06344486.1| conserved hypothetical protein [Clostridium sp. M62/1] gi|167666645|gb|EDS10775.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM 17241] gi|291076989|gb|EFE14353.1| conserved hypothetical protein [Clostridium sp. M62/1] Length = 310 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 66/165 (40%), Gaps = 11/165 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSS---DPVRSEFRRVI 56 ++ ++ A+ II S +R D + + +PV++ F + Sbjct: 118 LRSTAASYKKHLNEELETAISIITTSYLRT----EDLIRSVKENLPYINEPVKANFEAFV 173 Query: 57 ETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L +++ +I+ + +P + + + +Q Q ++ L +++ D + + Sbjct: 174 YEAELINANITSAINSLKMKIPNRVFHEWCGTL-IQCQSDRSMKNTLPTINQKFSDVRVV 232 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDP 159 +++++A+ + A + L L+YF + + + L P Sbjct: 233 QSELEAMMQGPRREAITMIFLVIANVPLLYFLNEDWFHTLIFTTP 277 >gi|114798264|ref|YP_760568.1| general secretion pathway protein F [Hyphomonas neptunium ATCC 15444] gi|114738438|gb|ABI76563.1| general secretion pathway protein F [Hyphomonas neptunium ATCC 15444] Length = 403 Score = 34.7 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 9/161 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +G+ + A+ G S P R V G +L+E++ R P Sbjct: 71 LAVLVSSGMTIEQALTAAAGDSDASPQRGLLLGVRSQVMEGSTLAEAMRAAPRAFP-PLF 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ L ++ V++ + + + + Sbjct: 130 RAVVS----SGESSGRLGLVLDQLAHHLERSYRLRTLVRSALIYPAILGIMATLMVTALM 185 Query: 142 TLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179 V +L D P ++G++ G+ V+ Sbjct: 186 VWVVPKLVEQFAMLGADELPPLTRFVIGLSGFVRDWGLFVL 226 >gi|327412695|emb|CAX67691.1| putative Type IV pilus integral membrane protein (PilR) [Yersinia enterocolitica] Length = 369 Score = 34.7 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 28/153 (18%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQH---L 61 ++ F +AL + + G P+ A+ +I +D P +E+ Sbjct: 30 RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ PL+E + G L EAL +++ R+ + Sbjct: 87 GRTFENVLAAWG---PLEE-----AALISAGMRSGKLPEALLQAGKLVEARRRI------ 132 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 L++ +K S + L FC+ + + Y+ Sbjct: 133 LTLVSKMSLY--PLLLFCLGGGMLVINGAYLIP 163 >gi|326789701|ref|YP_004307522.1| Mg2 transporter protein CorA family protein [Clostridium lentocellum DSM 5427] gi|326540465|gb|ADZ82324.1| Mg2 transporter protein CorA family protein [Clostridium lentocellum DSM 5427] Length = 304 Score = 34.7 bits (79), Expect = 7.0, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKN 114 + +G L E+ + L+ FF+ + +QS + L + +R+ Sbjct: 179 SQLVEVGEVLGENENDFFNEHNLRLFDFFTRRVSRLQSNVQ-----MLREYALQVREEYQ 233 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++ + + LP + Y + YM L +++ ++ A + + Sbjct: 234 SQIDIKQNNTMRILTVVTTIFLPLTLIAGWYGMNFTYMPELRWKYGYPLVIAISLAIICL 293 Query: 175 GIMVMRL 181 I + + Sbjct: 294 SIWICKK 300 >gi|325124302|gb|ADY83825.1| type 4 fimbrial assembly protein [Acinetobacter calcoaceticus PHEA-2] Length = 408 Score = 34.3 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F + LDI + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + F +++ + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSELLKQKIKK 172 >gi|262066832|ref|ZP_06026444.1| general secretion pathway protein F [Fusobacterium periodonticum ATCC 33693] gi|291379444|gb|EFE86962.1| general secretion pathway protein F [Fusobacterium periodonticum ATCC 33693] Length = 345 Score = 34.3 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +++GL + A+ +I+ + + + +++ + +G ++ +S + Sbjct: 15 LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTIGKNIYDSFKPFENTFGSTYL 74 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +L GN+ E+L ++S+ L ++ + + + +I VS Sbjct: 75 YILKIG-----ELSGNIVESLEDISKSL--DFDLSRRKKLGGILI-YPIVVICLTFLIVS 126 Query: 142 TLVYFTSPGYMNVL 155 L+ + P ++ + Sbjct: 127 FLLIYILPSFITIF 140 >gi|295697644|ref|YP_003590882.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] gi|295413246|gb|ADG07738.1| Type II secretion system F domain protein [Bacillus tusciae DSM 2912] Length = 566 Score = 34.3 bits (78), Expect = 7.1, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 9/144 (6%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71 + VRAG+P + +V ++ QS + ++ V G +L + + Sbjct: 224 VQTLAVFCRQFATLVRAGVPAARSVEILAAQSENRTLKRTLEAVAAEVRQGTALQRAFAA 283 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P + F ++ + G L L + + + K+ + A Sbjct: 284 HPSVFP----ALFIHMVG-AGEFSGQLDLMLDRAALFYERERATRQKI---TSALMYPAV 335 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155 ++ L+ P + Sbjct: 336 VLTIALGVSVFLLTSVIPTFAQTF 359 >gi|312139375|ref|YP_004006711.1| fad-dependent oxidoreductase [Rhodococcus equi 103S] gi|311888714|emb|CBH48026.1| putative FAD-dependent oxidoreductase [Rhodococcus equi 103S] Length = 542 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A+ V QS P E ++ LG L ++ + Sbjct: 39 LQQALGVSAEQSPPP--EESDAIVRESALGAPLVHALEDL 76 >gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 402 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + +R+G+ VSD + ++ Q SD +R E R+ G SLSE++ +P Sbjct: 71 MAMVLRSGMGVSDGLELVSRQVSDRLLRREALRLYREVLSGRSLSEAMMAEDSLIPGLLA 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140 +T + GNL + L N+S+ + R + +V+ + + IG L + Sbjct: 131 RMVATG-----EASGNLEQILHNMSQYYQQRYETEKRVKGALIYPALLMVVGIGLLAYVF 185 Query: 141 STLV 144 + L+ Sbjct: 186 AFLI 189 >gi|325672744|ref|ZP_08152440.1| alkylglycerone-phosphate synthase [Rhodococcus equi ATCC 33707] gi|325556621|gb|EGD26287.1| alkylglycerone-phosphate synthase [Rhodococcus equi ATCC 33707] Length = 542 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 + A+ V QS P E ++ LG L ++ + Sbjct: 39 LQQALGVSAEQSPPP--EESDAIVRESALGAPLVHALEDL 76 >gi|312114555|ref|YP_004012151.1| type II secretion system F domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219684|gb|ADP71052.1| Type II secretion system F domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 396 Score = 34.3 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 17/172 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AGL + +++A++ + P + R V+ + G SL E +S+ + Sbjct: 66 LTVLLQAGLSIPESLALLAVRPGQPRLEKALRLVLSEVNRGGSLREGMSKAQGAFDADYI 125 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL---------SMEAKASAWI 132 + T + G L L + M+A+V ++ A + Sbjct: 126 ALVGTG-----EEAGALPNCLQRYQNYADLKMKMRAQVLKTMTYPAALLATLSAVLTFLF 180 Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +P + S P +LI R + + +IG+ ++ + Sbjct: 181 LEVIPNFIGMYRELGSELPAPTQILIAVERHFPAIAIGITAAVIGVWILDRI 232 >gi|294338834|emb|CAZ87168.1| type 4 fimbrial assembly protein [Thiomonas sp. 3As] Length = 406 Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 4/157 (2%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + ++AG+P+ + ++ +P R+I + S+S R P + Sbjct: 75 MSTMIKAGVPLLQSFDIVGRGHPNP---NMARLIMDIRGDVETGTSLSNAFRKHP-KYFD 130 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L L L+ +++K+++ A + + + Sbjct: 131 ALYCNLVEAGETAGMLELVLDRLATYQEKSLAIRSKIKSALTYPIAVMVVAFVVVSIIML 190 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V + L+ VA + + + Sbjct: 191 FVVPVFTDVFSQFGASLPAPTLMVVAISNFFVHYWYI 227 >gi|293610129|ref|ZP_06692430.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827361|gb|EFF85725.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 408 Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F + LDI + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + F +++ + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSELLKQKIKK 172 >gi|119183920|ref|XP_001242935.1| hypothetical protein CIMG_06831 [Coccidioides immitis RS] Length = 1151 Score = 34.3 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%) Query: 21 DIIVRSVRAGLPVSDAVAVI-------VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D +V R GL + + + V ++ D S F R + SL E++S Sbjct: 439 DSVVAESRGGLSIEEFFEFLRSAQGEDVDKNRDYWASVFERFVRRSRRSQSLPEALSSSA 498 Query: 74 RYMPLQEVSFFSTV 87 M L S F Sbjct: 499 ARMDLDAFSSFLIS 512 >gi|330900248|gb|EGH31667.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 34.3 bits (78), Expect = 7.4, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I +RA + A+ + ++ +R +G + E++ P Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F V+S + S A+ S + ++K + + S +IG L Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344 Query: 139 CVSTLVYFTSPGYMNVLIN 157 V Y + + + Sbjct: 345 LVMVGAYSMTGNATQGMTH 363 >gi|115360619|ref|YP_777756.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|172064943|ref|YP_001815655.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|115285947|gb|ABI91422.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|171997185|gb|ACB68102.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 358 Score = 34.3 bits (78), Expect = 7.4, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L AG V ++A + + +R ++ GL++ E++ P Sbjct: 223 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 282 Query: 79 QEV 81 +E+ Sbjct: 283 EEI 285 >gi|260913756|ref|ZP_05920232.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC 43325] gi|260632295|gb|EEX50470.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC 43325] Length = 404 Score = 34.3 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76 + ++ +++ LP+ +A+ ++ +++ + R ++ G++ S +++ + YM Sbjct: 62 DLFTLLATLLQSTLPLKEALQALLQNTTNIQLNQWLRNLLMQLESGVAFSVALASLGSYM 121 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 QE+ ++ G L++ +++ + ++ KVQ + + + I+G Sbjct: 122 NYQELQLIKVG-----EMTGRLAQVCQQIAQYRQQSLVLQRKVQKIML---YPSIIVGIS 173 Query: 137 PFCVSTLVYFTSPGY 151 L+ F P + Sbjct: 174 LLLTLMLLLFIVPEF 188 >gi|254409511|ref|ZP_05023292.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] gi|196183508|gb|EDX78491.1| Bacterial type II secretion system protein F domain [Microcoleus chthonoplastes PCC 7420] Length = 312 Score = 34.3 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 15/171 (8%), Positives = 56/171 (32%), Gaps = 16/171 (9%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + ++ AK + + +G+ + ++ ++ + V+ ++V G Sbjct: 1 MTNRQNAKIFSQL-------AKLLNSGINLQQSLTLVGNDLNPAVKRYLQKVSLAVGSGQ 53 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +++ R + ++ + ++ G+L + L+ D + + + Sbjct: 54 DFATALT-CERRY----FNRWTISLIRLAEYSGSLPQTCQILAE---DAETQARQERLYG 105 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFML 173 +++ I + + + G + LL ++ Sbjct: 106 SVKRSAIATIWGFLVLTAAIFNPNATGIIKPEFWLRGLAIALLLWVMIVLV 156 >gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC 17982] gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 34.3 bits (78), Expect = 7.5, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 14/172 (8%) Query: 23 IVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 + +RAG P S A + V S V E+ R + + Sbjct: 111 VATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSLRRVERAPGV 170 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + LG L++ L + + D + ++ + + SA Sbjct: 171 AASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVAAAGPLMSAR 227 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ +LP + G M V A G+ R ++ Sbjct: 228 VLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVAAWAAGVASCRRIL 279 >gi|332298453|ref|YP_004440375.1| exonuclease [Treponema brennaborense DSM 12168] gi|332181556|gb|AEE17244.1| exonuclease [Treponema brennaborense DSM 12168] Length = 1030 Score = 34.3 bits (78), Expect = 7.6, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 17/101 (16%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 + ++ ALD R + A+ + + +P+R+EF R +S+ Sbjct: 598 RQIESEYAGALDAFRRKRE----LQGALRRVQDEL-EPLRTEFTR------------QSV 640 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + + + + Q+Q G ++ A + +R Sbjct: 641 ALAQTRTESDALRTLAAAVMQQAQKAGYTADTAAKTAESVR 681 >gi|186477404|ref|YP_001858874.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184193863|gb|ACC71828.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 407 Score = 34.3 bits (78), Expect = 7.6, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVR-----SEFRRVIETQHLGLSLSESISRMVRYMP 77 + +RAGLP++ A+ ++ S R R + G+S S +++ P Sbjct: 73 LSGLLRAGLPLASALELLAQASKHNARTKGMPRIVRALARDITAGVSFSSALA----RHP 128 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 Q + + ++ V + G L LA L+ +AKV+A A ++ +L Sbjct: 129 AQFNALYCQLVEV-GEASGTLPAVLARLADDRERAAAQRAKVRAALTYPV--AVLLLALS 185 Query: 138 FCVSTLVYFT 147 + LV+ Sbjct: 186 ITTALLVWVV 195 >gi|124265701|ref|YP_001019705.1| pilus tip-associated protein [Methylibium petroleiphilum PM1] gi|124258476|gb|ABM93470.1| Pilus tip-associated protein [Methylibium petroleiphilum PM1] Length = 408 Score = 34.3 bits (78), Expect = 7.6, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I +RAG+P+ + ++ S++P V + G SLS + + Y Sbjct: 78 IATMMRAGVPLLQSFDIVARGSTNPRVTKLLTDIRSDIETGTSLSSAFRKHPLY-----F 132 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ +K K+++ + A + + + Sbjct: 133 DALYCNLVEAGEAAGILETLLERLATYQEKTLEIKRKIKSALIYPVAVLVVAFVVVAVIM 192 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L ++ + + + + Sbjct: 193 IFVIPAFKEVFTSFGADLPAPTLFVMSMSEIFVSYWWL 230 >gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium 4_1_37FAA] Length = 394 Score = 34.3 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 9/128 (7%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVR------SEFRRVIETQHLGLSLSES 68 P L+ V + AG+ A I + + E + G S E Sbjct: 249 PEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKEC 308 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127 + F ++S + G L++ L + + + AK + K Sbjct: 309 YEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTK 368 Query: 128 ASAWIIGS 135 A + Sbjct: 369 LLAPMFFM 376 >gi|117928527|ref|YP_873078.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117648990|gb|ABK53092.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 409 Score = 34.3 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 10/141 (7%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + +GL + A+ ++ Q+ ++ V G SLS ++S+ R P Sbjct: 76 ATMINSGLSLLRALTILREQTQSKALQKVLTEVRNDVETGSSLSAAMSKHPRAFP----P 131 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 +I ++GG L L ++ +++KV+ ++ V Sbjct: 132 LMVNMIR-AGEVGGFLDSVLLEIAANYEAEVKLRSKVK---SAMTYPVVVLCISLLAVLG 187 Query: 143 LVYFTSPGYMNVLINDPRGHM 163 ++ F P + G + Sbjct: 188 MLTFVVP-VFAKMFKQLGGKL 207 >gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC 27750] gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC 27750] Length = 425 Score = 34.3 bits (78), Expect = 7.7, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 48/138 (34%), Gaps = 10/138 (7%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 ++AG+ V +A+ ++ Q+ + ++ G +LS+S+ + Sbjct: 90 FCRQFASILKAGVSVINALEMLAEQTENKKLKEAIVNTQSNVEKGENLSDSMRQ------ 143 Query: 78 LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 + + G+L +L ++ + V+ M ++ + Sbjct: 144 NDAFPSILIDMVRAGEASGSLENSLTRMAIQFEKDAKLNGIVKKAMM---YPIVLLCVMI 200 Query: 138 FCVSTLVYFTSPGYMNVL 155 + ++ F P +M + Sbjct: 201 GVIIVMLTFVIPSFMTMF 218 >gi|293374829|ref|ZP_06621132.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909] gi|292646551|gb|EFF64558.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909] Length = 268 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 5/182 (2%) Query: 4 LIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 L KK+ + ++ + V A + +A+ I P++ + ++I + + Sbjct: 79 LRKKKLYNTHIRKQINLYMSLVSQMVSAKQTILNALITIAPNLQSPIKEDVYQLIRSIEV 138 Query: 62 GLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +++ + + F + + + GGN + L+ L + + Sbjct: 139 DGYPYDALDKFSDKYSNDTYLRIFHNQLKLTFRHGGN-EDILSELVDEHSSLEVYVDEYS 197 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-LGVAAAFMLIGIMVM 179 K +I + + ++ G ++ G+ LI ++V Sbjct: 198 KKKGFYKNYTYIFMAYLLIFPIMFVIFQGSMYENYVSSTFGLIVSSGIYIITTLIAMIVE 257 Query: 180 RL 181 + Sbjct: 258 KK 259 >gi|237801972|ref|ZP_04590433.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024830|gb|EGI04886.1| type II secretion system protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 209 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L I +RA + A+ + ++ +R +G + E++ P Sbjct: 76 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 135 Query: 79 QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138 E F V+S + S A+ S + ++K + + S +IG L Sbjct: 136 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 190 Query: 139 CVSTLVYFTSPGYMNVLIN 157 V Y + + + Sbjct: 191 LVMVGAYSMTGNATQGMTH 209 >gi|170698375|ref|ZP_02889449.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170136714|gb|EDT04968.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 358 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78 L AG V ++A + + +R ++ GL++ E++ P Sbjct: 223 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 282 Query: 79 QEV 81 +E+ Sbjct: 283 EEI 285 >gi|331007278|ref|ZP_08330481.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC1989] gi|330418927|gb|EGG93390.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium IMCC1989] Length = 404 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 7/122 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81 + V+AG+P+ + ++ S +P E I G S + ++ + +Y Sbjct: 74 LATMVKAGVPLVQSFDIVADGSDNPNMKELILSIRTDVASGTSFAATLKKHPKYFD---- 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F +I+ + G L L L+ + +KAK++ + +I + + Sbjct: 130 ELFCNLIA-AGEQSGALETLLDRLAVYKEKTEILKAKIKKALTY-PIAIVLISLVVTGIL 187 Query: 142 TL 143 + Sbjct: 188 LI 189 >gi|294142970|ref|YP_003558948.1| general secretion pathway protein F [Shewanella violacea DSS12] gi|293329439|dbj|BAJ04170.1| general secretion pathway protein F [Shewanella violacea DSS12] Length = 389 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V AGLP+ +A+ + Q D + S V G SL++S++ Sbjct: 58 IATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHI-----F 112 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ +K+K+ QA+ + IG + + Sbjct: 113 DDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVVAIGVIGILL 172 Query: 141 STLV 144 + +V Sbjct: 173 AAVV 176 >gi|117620490|ref|YP_854922.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561897|gb|ABK38845.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 406 Score = 34.3 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 9/134 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + RAG+P+ A+A + + P++ + E G LS S+ R Sbjct: 74 MYALTRAGIPILRAIAGLEESAHSKPLKRALHALGEDLGNGRPLSSSMQAHPRV-----F 128 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 S I + G L EA L+ + +++ + ++++ ++ + Sbjct: 129 SSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKT---AMRYPSFVLIAIGIAMV 185 Query: 142 TLVYFTSPGYMNVL 155 L P + + Sbjct: 186 ILNIMVIPVFAGMF 199 >gi|261250241|ref|ZP_05942817.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP 102891] gi|260939357|gb|EEX95343.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP 102891] Length = 408 Score = 34.3 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 14/137 (10%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + + G+P+ A+ ++ + S ++ + G +S+ + + + Sbjct: 77 LATMLATGVPIIHALKLVADNQRKAEMTSILAQISKGIESGTPISKVMHATSSHFDRLYI 136 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +T + GNL++A ++ + ++AKV A I + + Sbjct: 137 DLVATG-----EQTGNLADAFERIASYREKSERLRAKV--------IKALIYPCMVVTTA 183 Query: 142 TLVYFTSPGYMNVLIND 158 +V + + Sbjct: 184 LVVSYLMLTMVIPQFES 200 >gi|227502474|ref|ZP_03932523.1| bacterial type II secretion system protein F domain protein [Corynebacterium accolens ATCC 49725] gi|227076843|gb|EEI14806.1| bacterial type II secretion system protein F domain protein [Corynebacterium accolens ATCC 49725] Length = 259 Score = 34.3 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 57/185 (30%), Gaps = 7/185 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQ 59 ++ + + + ++ +RAG ++ A+ + + Sbjct: 74 MVARTRRRGREALAGYFGVVTADLRAGATLASALTRGAESLPATTPRDMSAALESTATAV 133 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G ++S E++ ++ + +Q G ++ + + Sbjct: 134 ARGAPPHVALSGAHA---DAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQST 190 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A +A+A ++ LP + + L+ G +LL + G Sbjct: 191 AAGLQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWS 250 Query: 180 RLMIN 184 R++I Sbjct: 251 RVIIR 255 >gi|288553373|ref|YP_003425308.1| late competence protein ComGB [Bacillus pseudofirmus OF4] gi|288544533|gb|ADC48416.1| late competence protein ComGB [Bacillus pseudofirmus OF4] Length = 354 Score = 34.3 bits (78), Expect = 8.1, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 7/138 (5%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ + ++ G + A++ ++ V +V + G + +S S++ + Sbjct: 27 LLGKLLKQGYSMDHALSFMLIHLPKEVSVPLTQVQASLKNGQEIHQSFSQLPVPRDVISF 86 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 +F Q G +S+ +L R+ K ++ L WI + + Sbjct: 87 LYF-------YQYHGQVSDGFIQAGTLLEKRQVTKHQMYKLLRYPVMLVWICFVVLIVLH 139 Query: 142 TLVYFTSPGYMNVLINDP 159 V + DP Sbjct: 140 LFVVPHFNSLFETMQGDP 157 >gi|327542655|gb|EGF29127.1| membrane protein containing Type II secretion system F domain [Rhodopirellula baltica WH47] Length = 350 Score = 34.3 bits (78), Expect = 8.2, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 10/136 (7%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESISR 71 + L+ + +G + +A + + + EF RV G S S +++ Sbjct: 21 ESLAMLLEEVSAMAASGRSLVSGLAGLNDVALGRLGRAAEFVRV--RVKHGQSPSVAMAS 78 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + + ++ G + + R++R R++ + +V ++ + Sbjct: 79 LSLPYQTP----IRIAMQIMAETGSTAA--IHETVRLIRQREDQRRQVWLTAINPLLNML 132 Query: 132 IIGSLPFCVSTLVYFT 147 + + F V + + Sbjct: 133 VAAVVAFFVLPWILIS 148 >gi|28378845|ref|NP_785737.1| ComG operon protein 2 [Lactobacillus plantarum WCFS1] gi|254557051|ref|YP_003063468.1| ComG operon protein 2 [Lactobacillus plantarum JDM1] gi|308181045|ref|YP_003925173.1| ComG operon protein 2 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271682|emb|CAD64588.1| ComG operon protein 2 [Lactobacillus plantarum WCFS1] gi|254045978|gb|ACT62771.1| ComG operon protein 2 [Lactobacillus plantarum JDM1] gi|308046536|gb|ADN99079.1| ComG operon protein 2 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 349 Score = 34.3 bits (78), Expect = 8.2, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 36/201 (17%) Query: 1 MKHLIKKRTAKFLDDFPNALDI-----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 M+ I R K P A+ + + G A + P + Sbjct: 12 MRRPINLRKRK---RLPIAMQAKLFETLADLLGNGFSFQQAFQFTLD-VEGPAFQSLQPA 67 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + G LS ++ + + F + G L L +++R R Sbjct: 68 LGRLAAGDDLSMALRPY---IAVDLYYQFLIA-----ETHGELRRTLMQAGQLMRARAEQ 119 Query: 116 KAKVQAL------------SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++ L A I+ SL + + G Sbjct: 120 GRQIRRLLQYPCLLLILLLGTLGTVKAAILPSLAHGGNGSGTIAN-------WQWFSGIT 172 Query: 164 LLGVAAAFMLIGIMVMRLMIN 184 ++ + +L+G+ V RL I Sbjct: 173 VITLVICLLLVGLQVSRLPIR 193 >gi|255319718|ref|ZP_05360926.1| pilin biogenesis protein [Acinetobacter radioresistens SK82] gi|262380000|ref|ZP_06073155.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] gi|255303247|gb|EET82456.1| pilin biogenesis protein [Acinetobacter radioresistens SK82] gi|262298194|gb|EEY86108.1| general secretion pathway protein F [Acinetobacter radioresistens SH164] Length = 408 Score = 34.3 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59 ++ L+KKR + + ++AG+P+ ++ +P E + Sbjct: 58 LEGLMKKRVSTLDITI--FTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEV 115 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + + ++ + +Y + F +++ + G L L ++ + +K K+ Sbjct: 116 EGGNTFAGALRKYPQYFD----NLFCSLVE-SGEQSGALETMLDRVAIYKEKSELLKQKI 170 Query: 120 QA 121 + Sbjct: 171 KK 172 >gi|119477435|ref|ZP_01617626.1| Type II secretory pathway, component PulF [marine gamma proteobacterium HTCC2143] gi|119449361|gb|EAW30600.1| Type II secretory pathway, component PulF [marine gamma proteobacterium HTCC2143] Length = 405 Score = 34.3 bits (78), Expect = 8.3, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 11/160 (6%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ + ++ + + V G S ++SIS+ +Y Sbjct: 75 LATMMKAGVPMVQSFDIVAEGLDNHSMSELVTEVKNEVASGTSFAQSISKHPKYFD---- 130 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F + + G L L ++ + +KAK++ + ++ Sbjct: 131 ELFCN-LVASGEQSGTLETMLDRIATYKEKTEALKAKIKKATT---YPIAVLVIATIVTG 186 Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179 L+ P + L V + + + Sbjct: 187 ILLVKVIPSFAESFANFGSELPAFTLLVVSLSEAVQEWWL 226 >gi|169797413|ref|YP_001715206.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE] gi|184156664|ref|YP_001845003.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|213155773|ref|YP_002317818.1| pilin biogenesis protein [Acinetobacter baumannii AB0057] gi|260556305|ref|ZP_05828524.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|301345146|ref|ZP_07225887.1| pilin biogenesis protein [Acinetobacter baumannii AB056] gi|301510693|ref|ZP_07235930.1| pilin biogenesis protein [Acinetobacter baumannii AB058] gi|301594953|ref|ZP_07239961.1| pilin biogenesis protein [Acinetobacter baumannii AB059] gi|332873072|ref|ZP_08441029.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6014059] gi|169150340|emb|CAM88237.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE] gi|183208258|gb|ACC55656.1| Type II secretory pathway, component PulF [Acinetobacter baumannii ACICU] gi|193076177|gb|ABO10792.2| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC 17978] gi|213054933|gb|ACJ39835.1| pilin biogenesis protein [Acinetobacter baumannii AB0057] gi|260410360|gb|EEX03659.1| general secretion pathway protein F [Acinetobacter baumannii ATCC 19606] gi|322506551|gb|ADX02005.1| PulF [Acinetobacter baumannii 1656-2] gi|323516430|gb|ADX90811.1| Type II secretory pathway, component PulF [Acinetobacter baumannii TCDC-AB0715] gi|332738584|gb|EGJ69454.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii 6014059] Length = 408 Score = 34.3 bits (78), Expect = 8.4, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFPN---ALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F LDI + ++AG+P+ ++ +P E Sbjct: 47 VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + F +++ + G L L ++ Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 162 KSELLKQKIKK 172 >gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA] Length = 374 Score = 34.3 bits (78), Expect = 8.5, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQHLGLSLSES 68 ++++P + V + AG+ + AV I V +F++ + LG+S +++ Sbjct: 230 MEEYPIIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 289 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + + + L S ++S G + L+ L + + + + E + Sbjct: 290 LRELGSSIQLPCYKKLSVLLSQSLLRGTR--DLLSRLEEEETEAFSERKETARRKGEEAS 347 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154 + ++ + + L P +++ Sbjct: 348 TKLLMPMILMLIVILTLLMVPAFLSF 373 >gi|281422852|ref|ZP_06253851.1| conserved hypothetical protein [Prevotella copri DSM 18205] gi|281403118|gb|EFB33798.1| conserved hypothetical protein [Prevotella copri DSM 18205] Length = 482 Score = 34.3 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 28/125 (22%) Query: 1 MKHLIKKRTA-----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55 +K L R L P LD++ R G+P+ + + P+R EF + Sbjct: 190 LKGLALTRQQVLDVYMILGGIPYYLDMLER----GVPLDVCIDRLFFSQDSPLRGEFDFL 245 Query: 56 IETQ--------HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-- 105 + + LSE + M R + E+ + GG LSE L NL Sbjct: 246 FRSLFNDSKHYRKIVEVLSEKMKGMTRKELMDELKL---------KGGGQLSEILENLKK 296 Query: 106 SRILR 110 +R Sbjct: 297 CDFIR 301 >gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2] gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus 98/2] Length = 658 Score = 34.3 bits (78), Expect = 8.6, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 55/146 (37%), Gaps = 14/146 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62 + + P L I + G +S A+ + + R EF RV+ +G Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEEKR--YRREFNRVLNEITKQDSMG 485 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118 + ++ + ++ L + S T + + + G + L L+ ++ +K ++ Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSR 541 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144 ++A + + ++ + ++ Sbjct: 542 MRAYQVLGILTPLLLIATILIAIVII 567 >gi|312621767|ref|YP_004023380.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor kronotskyensis 2002] gi|312202234|gb|ADQ45561.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor kronotskyensis 2002] Length = 253 Score = 34.3 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 2/146 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60 K K + K + + ++AGL + VI +P + F + T Sbjct: 93 KEYEKAQKNKLRSSISDIALMCELGLKAGLSLDRIFTVIAETIVEPRYKDAFLQTAATYK 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + E + + ++E+ + ++G + ++L +++ ++ + Sbjct: 153 TTHDVEECFLILKGELEIRELEILKRALLEVEKVGLSGIQSLEVFAQV-ETMNKIEQIYK 211 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146 + + + ++ F + ++ +F Sbjct: 212 KSDKARTYTTYAMVAMVFALISIYFF 237 >gi|291557191|emb|CBL34308.1| hypothetical protein ES1_13170 [Eubacterium siraeum V10Sc8a] Length = 290 Score = 34.3 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 48/151 (31%), Gaps = 2/151 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++++ + P + + + ++ V + + E S Sbjct: 138 MREKRDAIEQELPRFVATVEQELKTSRDVLSIMENFKKHAGVHFAYELDVTCADMRS-SS 196 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++R + ++S + V G + + L+ + + + K +A + Sbjct: 197 YEAALTRFEARIGSAQLSDVVRGL-VSVIRGDDSAVYFKMLAHDFKLIELQRLKAKAAKI 255 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 K + G L + T + ++ L Sbjct: 256 PPKIRIFSFGMLMLFLLTYLVVMGMQLLDSL 286 >gi|169831154|ref|YP_001717136.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] gi|169637998|gb|ACA59504.1| type II secretion system protein [Candidatus Desulforudis audaxviator MP104C] Length = 433 Score = 34.3 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 24 VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + AG+PV A+ ++ Q+ + +R V G SL+ + R P Sbjct: 104 AALIDAGVPVLRALRILTAQAPNRRLRDTLDEVAAAVERGSSLAGAFRRHPDVFPS---- 159 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 T + +LGG L+ L LS + K+++ Sbjct: 160 -VFTSLVEAGELGGQLNLVLERLSVHYEKEHLFREKMRS 197 >gi|157959976|ref|YP_001500010.1| general secretion pathway protein F [Shewanella pealeana ATCC 700345] gi|157844976|gb|ABV85475.1| general secretion pathway protein F [Shewanella pealeana ATCC 700345] Length = 407 Score = 34.3 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 I V AGLPV +A+ + Q D + S V G SL++S++ E+ Sbjct: 76 IATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFD--EL 133 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ R+ +K+K+ QA+ + IG + + Sbjct: 134 Y---RAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVVAIGVIAILL 190 Query: 141 STLV 144 + +V Sbjct: 191 AAVV 194 >gi|77163844|ref|YP_342369.1| type II secretion system protein F [Nitrosococcus oceani ATCC 19707] gi|254435335|ref|ZP_05048842.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] gi|76882158|gb|ABA56839.1| type II secretion system protein F [Nitrosococcus oceani ATCC 19707] gi|207088446|gb|EDZ65718.1| Bacterial type II secretion system protein F domain [Nitrosococcus oceani AFC27] Length = 406 Score = 34.3 bits (78), Expect = 8.7, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 9/148 (6%) Query: 2 KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59 K L+ +R K + + + AG+P+ A +I E ++ Sbjct: 54 KSLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESISMQEMVLKIKGEV 113 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +L+E++ + R F + + G L L ++ + +K K+ Sbjct: 114 EGGGTLAEALKQHPRQFD----PLFCN-LVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147 + +A ++ + L++ Sbjct: 169 KKALFYP--TAVVVVAFIITAILLIFVI 194 >gi|322412051|gb|EFY02959.1| CorA-like3 Mg2+ transporter protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 305 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 FS+ ++ L E L +R+ + + + + + + +P + Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 Y + YM L + P G+ + A + + Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293 >gi|326318390|ref|YP_004236062.1| Type II secretion system F domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375226|gb|ADX47495.1| Type II secretion system F domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 405 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 23 IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + ++AG+P+ A ++ ++ V + G SL+ + + P+ Sbjct: 75 MATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRK----YPMY-F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + + +K+K+++ M A + + + Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPTAVIIVAFVVVTVIM 189 Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V D L + + + + + Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVKWWWL 227 >gi|157372482|ref|YP_001480471.1| general secretion pathway protein F [Serratia proteamaculans 568] gi|157324246|gb|ABV43343.1| general secretion pathway protein F [Serratia proteamaculans 568] Length = 403 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63 ++R + + + A LP+ +A+ + QS V R+ GL Sbjct: 55 ARRRHRLSSGELALVTRQLATLIAAALPLEEALLTVACQSEKKTVIQLITRIRSHVLEGL 114 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QAL 122 SLS+++ + F +++ + G L L+ + R+ +K K+ QA+ Sbjct: 115 SLSQALMQFPSVFD----RLFCAMVA-AGESSGQLPLIFTELADYVEQRQKIKNKMTQAM 169 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + + I + + +V ++++ P +L + Sbjct: 170 TYPVILTLVAIAVIGVLLVAVVPKVIEQFVHMKQTLPLTTQILLLC 215 >gi|326790819|ref|YP_004308640.1| type II secretion system F domain [Clostridium lentocellum DSM 5427] gi|326541583|gb|ADZ83442.1| Type II secretion system F domain [Clostridium lentocellum DSM 5427] Length = 404 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V +G+P+ A+ + + V E I + G SL +S+S + Y P+ Sbjct: 277 MSMLVESGIPMLQAIEITKKVIGNAVADEELDLAIISLKQGQSLYDSLSGSIIYPPI--- 333 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS---AWIIGSLPF 138 ++I++ + G L + L +S ++ ++ L +E + A I+G + Sbjct: 334 --MYSMINIGEETGA-LDDMLIKISVYFKEEVDIAVDNMTLLIEPALTIFMAVIVGGIML 390 Query: 139 CVSTLVYFTSPGYM 152 V + + M Sbjct: 391 AVMLPTFAAANAMM 404 >gi|53803861|ref|YP_114525.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus str. Bath] gi|53757622|gb|AAU91913.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus str. Bath] Length = 404 Score = 34.3 bits (78), Expect = 8.8, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65 K A F + AG+P+ A ++ +P ++ + G +L Sbjct: 65 KHIAVFSRQL-------ATMLSAGVPLVQAFDIVGRGHDNPAMQDLLMSIKADVEAGTTL 117 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++S+ + F ++ + G L L ++ +++K K++ Sbjct: 118 ADALSKHPVHFD----ELFCNLVR-AGEQAGVLETLLHKVADYKEKTESLKGKIKKALAY 172 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 A + + + V T Sbjct: 173 PIAVVVVAVIVTSILLIFVVPTFEDLFKSF 202 >gi|294101766|ref|YP_003553624.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293616746|gb|ADE56900.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 396 Score = 34.3 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 15/185 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 M+ R L++ + + G +SD++ ++ + +RS +++ + Sbjct: 50 MRFFPSGRKNLSLEELCLFFTHLSAMISMGGTLSDSLYIMESELPQATLRSILQKIQDEL 109 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G S SES+ + P + + G L + L LS R+ + K+ Sbjct: 110 RGGKSFSESLGLSGDWPPG------VLAMVSAGEESGELLKMLRYLSSYFMQRRVFRKKL 163 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLI 174 + A++ ++ L + P VL + + L + F+ + Sbjct: 164 IGALV---YPAFVAIVSVVVLNILFFKVFPQIEAVLADLGIALPASTRLFLSFSKFFLTV 220 Query: 175 GIMVM 179 GI ++ Sbjct: 221 GIGII 225 >gi|262273166|ref|ZP_06050982.1| general secretion pathway protein F/type II secretory pathway component PulF [Grimontia hollisae CIP 101886] gi|262222744|gb|EEY74053.1| general secretion pathway protein F/type II secretory pathway component PulF [Grimontia hollisae CIP 101886] Length = 406 Score = 34.3 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 7/148 (4%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V+A +P+ + + + Q+ +++ V G +LS+S+ Sbjct: 75 LATLVQAAMPLEECIKAVADQTEKQRLKNMLTGVRARVVEGYTLSDSLGDYPHV-----F 129 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEAKASAWIIGSLPFCV 140 + + G+L L L+ + +R+ +K K +QA+ + IG + F + Sbjct: 130 DQLFRAMVAAGEKSGHLGPVLERLADYVENRQQVKNKLIQAMVYPMVLTVAAIGIVAFLL 189 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA 168 +T+V ++ P +L A Sbjct: 190 ATVVPDIVGQFLQTGAELPNITQVLLAA 217 >gi|237812402|ref|YP_002896853.1| hypothetical protein GBP346_A2150 [Burkholderia pseudomallei MSHR346] gi|237505033|gb|ACQ97351.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 153 Score = 34.3 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+ +P V S Y+++L L + A + IG V +M+ Sbjct: 23 RISQWILVLMPIVFVAFCVLLISLWYIDILTGWLIAAFALLIEAMLIGIGFFV-FVMVRI 81 >gi|328787590|ref|XP_001121445.2| PREDICTED: hypothetical protein LOC725618 [Apis mellifera] Length = 1115 Score = 34.3 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 6/74 (8%) Query: 53 RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112 + + + +S +++ + +++ V ++ + G L E+LA RILR+ Sbjct: 728 ETITDRLRMAVS--QALGDASVQIDNDDIN----VENIDEEEGKRLDESLAAAFRILREN 781 Query: 113 KNMKAKVQALSMEA 126 + +++K Q S +A Sbjct: 782 RQLRSKKQEKSAQA 795 >gi|182437111|ref|YP_001824830.1| hypothetical protein SGR_3318 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465627|dbj|BAG20147.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 280 Score = 34.3 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + G +A A + PV R LG +E+ R + + Sbjct: 145 CIAVGAGPREAAAEVGDSIGGPVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAGPLA 201 Query: 86 TVISVQSQLGGNLSEALANL 105 + G +E +A L Sbjct: 202 RCLHRAGSTGAPAAEPVARL 221 >gi|251782724|ref|YP_002997027.1| hypothetical protein SDEG_1318 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391354|dbj|BAH81813.1| hypothetical protein SDEG_1318 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 305 Score = 34.3 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 FS+ ++ L E L +R+ + + + + + + +P + Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 Y + YM L + P G+ + A + + Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293 >gi|121603678|ref|YP_981007.1| type II secretion system protein [Polaromonas naphthalenivorans CJ2] gi|120592647|gb|ABM36086.1| type II secretion system protein [Polaromonas naphthalenivorans CJ2] Length = 405 Score = 34.3 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + ++AG+P+ + ++ + + +++ + S+S R P+ + Sbjct: 75 LATMMKAGVPLLQSFDIVGRGNPN---GSVTKLLNDVRTDVETGTSLSGAFRKYPMY-FN 130 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142 + + G L L L+ + + +K+K+++ M + + + + Sbjct: 131 ALYCNLVEAGEAAGILESLLDRLAIYMEKTEAIKSKIKSALMYPASVVVVAFVVVAVIMI 190 Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 V + + L+ +A + + + Sbjct: 191 FVIPAFKQVFSSFGAELPAPTLIVMAISEFFVAYWWL 227 >gi|322834404|ref|YP_004214431.1| Type II secretion system F domain protein [Rahnella sp. Y9602] gi|321169605|gb|ADW75304.1| Type II secretion system F domain protein [Rahnella sp. Y9602] Length = 406 Score = 34.3 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 60/178 (33%), Gaps = 22/178 (12%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60 + + F+ ++AGLP+ +++ ++ + P V + Sbjct: 61 RFWKNQERVAFVRQL-------ATLLQAGLPLVNSLTLLANEHPKPAWHCVLSNVAKGVR 113 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G LS +++ P ++ I G L+ L L ++ +A+++ Sbjct: 114 EGKPLSVTLNHYPDVFP--DIYRQIISI-------GELTGQLDKCCLQLATQQEQQAELR 164 Query: 121 ALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVL----INDPRGHMLLGVAAAFML 173 + +A + + ++ P + + P +L +A+ ++ Sbjct: 165 SKVKKALRYPLIVSVIAIVVTLLMLTLVLPEFAKIYASFDAELPWFTRMLVIASGALI 222 >gi|300768050|ref|ZP_07077956.1| competence protein ComGB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494399|gb|EFK29561.1| competence protein ComGB [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 322 Score = 34.3 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 28/174 (16%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82 + + G A + P + + G LS ++ + + Sbjct: 9 LADLLGNGFSFQQAFQFTLD-VEGPAFQSLQPALGRLAAGDDLSMALRPY---IAVDLYY 64 Query: 83 FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL------------SMEAKASA 130 F + G L L +++R R +++ L A Sbjct: 65 QFLIA-----ETHGELRRTLMQAGQLMRARAEQGRQIRRLLQYPCLLLILLLGTLGTVKA 119 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 I+ SL + + G ++ + +L+G+ V RL I Sbjct: 120 AILPSLAHGGNGSGTIAN-------WQWFSGITVITLVICLLLVGLQVSRLPIR 166 >gi|296111128|ref|YP_003621509.1| ComGB [Leuconostoc kimchii IMSNU 11154] gi|295832659|gb|ADG40540.1| ComGB [Leuconostoc kimchii IMSNU 11154] Length = 348 Score = 33.9 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 72/186 (38%), Gaps = 20/186 (10%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L + + K + + +++G +S ++ ++ S + + + Sbjct: 11 KQLTRSKRFKIREQIL-FFQELGELLQSGYSISQSLDILASAHSK-----WYQWLTEVRY 64 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAK 118 GL+ ++ +++ S+ I +Q +L GNLSE L + + L + + K Sbjct: 65 GLNQGLALHLILQ-------KNVSSQILLQLKLADQHGNLSETLVAIGQNLAKLQQQQNK 117 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLI 174 V + I+G++ + L+Y + + + P G A +L Sbjct: 118 VMQVMRYPLILLSILGAMLVGLKYLLYPILNQWQDKAASSDIPNPAYTYFFGGVACLLLF 177 Query: 175 GIMVMR 180 G++++ Sbjct: 178 GLIIIW 183 >gi|323127550|gb|ADX24847.1| CorA-like3 Mg2+ transporter protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 305 Score = 33.9 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 FS+ ++ L E L +R+ + + + + + + +P + Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 Y + YM L + P G+ + A + + Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293 >gi|308450241|ref|XP_003088227.1| hypothetical protein CRE_13219 [Caenorhabditis remanei] gi|308248714|gb|EFO92666.1| hypothetical protein CRE_13219 [Caenorhabditis remanei] Length = 545 Score = 33.9 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 38 AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV---------- 87 I + ++ + E RV E + + + + R + + S FS V Sbjct: 439 EHIPEKMAEDIADEVARVTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIENVNVTL 498 Query: 88 -----ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +Q Q GGNL + A L+ +R+R++ + + + K Sbjct: 499 QTIEKQRIQQQDGGNLMDLSALLNSQVRNRESARRQTITSIADKK 543 >gi|209520062|ref|ZP_03268838.1| transcriptional regulator, AraC family [Burkholderia sp. H160] gi|209499493|gb|EDZ99572.1| transcriptional regulator, AraC family [Burkholderia sp. H160] Length = 277 Score = 33.9 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 1 MKHLIKKRTAKFLDDFPN-ALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRV 55 M+++ +R ++ + A DI+ ++ AG +A + + + +RS R Sbjct: 48 MRYVRARRLSEAARRLADGAPDILAVALDAGYGSHEAFTRAFREQFGITPEALRS--RGH 105 Query: 56 IETQHLGLS--LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++ L + E++ + ++ F + + + S+A+ Sbjct: 106 LDKLALMEPIKMDETLLTHLDPPRFEDARAFLVA-GLSERYTCDSSKAI 153 >gi|254784516|ref|YP_003071944.1| general secretion pathway protein F [Teredinibacter turnerae T7901] gi|237685057|gb|ACR12321.1| general secretion pathway protein F [Teredinibacter turnerae T7901] Length = 410 Score = 33.9 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%) Query: 23 IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81 + V++GLP+ + +A QS P +V GLSL+++++ + R Sbjct: 80 LASLVQSGLPLDEVLASTAKQSRKPAAKTIMLQVRSRVLEGLSLAQAMAEIPRV-----F 134 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 + + G L L L+ + K K++ A I+ + V Sbjct: 135 DGLYRAMVRAGESSGYLGPVLERLADYTERSQETKQKLKG----AMVYPIIMMLVSISVV 190 Query: 142 TLVYF 146 TL+ Sbjct: 191 TLMMV 195 >gi|218782645|ref|YP_002433963.1| type II secretion system protein [Desulfatibacillum alkenivorans AK-01] gi|218764029|gb|ACL06495.1| Type II secretion system protein, PilC [Desulfatibacillum alkenivorans AK-01] Length = 406 Score = 33.9 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 13/141 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 + + + F F +RAG+P+ D V Q+ +P ++ + + Sbjct: 60 LSRVGARDIILFTKQF-------ATMLRAGIPIIDLFKVAESQTENPKLKKVIAVISKDI 112 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G SL +++ + P S + + G L + L L I+ + +K + Sbjct: 113 QEGASLHQAMKKH----PSV-FSPLYLSMMRAGETSGALPQVLERLIYIIDHEEKVKKDI 167 Query: 120 QALSMEAKASAWIIGSLPFCV 140 + + ++ F + Sbjct: 168 RGAMIYPALVTIVLTGAFFLL 188 >gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2] gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2] Length = 662 Score = 33.9 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 55/146 (37%), Gaps = 14/146 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62 + + P L I + G +S A+ + + R EF RV+ +G Sbjct: 432 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEEKR--YRREFNRVLNEITKQDSMG 489 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118 + ++ + ++ L + S T + + + G + L L+ ++ +K ++ Sbjct: 490 IPITRA--KINTRSWLGKFSL--TTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSR 545 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144 ++A + + ++ + ++ Sbjct: 546 MRAYQVLGILTPLLLIATILIAIVII 571 >gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 406 Score = 33.9 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 7/139 (5%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66 R + + V AGL + +A+ + Q +RS V G SL+ Sbjct: 60 RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLA 119 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSME 125 +S++ F ++++ + G+L + L L+ R++M+ K +QA+ Sbjct: 120 DSLAAFPHVFD----QLFRSMVA-AGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174 Query: 126 AKASAWIIGSLPFCVSTLV 144 + IG + ++ +V Sbjct: 175 IVLTCVAIGVISILLTAVV 193 >gi|226197266|ref|ZP_03792843.1| hypothetical protein BUH_1813 [Burkholderia pseudomallei Pakistan 9] gi|251767321|ref|ZP_02266787.2| hypothetical protein BMAPRL20_A1015 [Burkholderia mallei PRL-20] gi|225930645|gb|EEH26655.1| hypothetical protein BUH_1813 [Burkholderia pseudomallei Pakistan 9] gi|243063167|gb|EES45353.1| hypothetical protein BMAPRL20_A1015 [Burkholderia mallei PRL-20] Length = 158 Score = 33.9 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+ +P V S Y+++L L + A + IG V +M+ Sbjct: 23 RISQWILVLMPIVFVAFCVLLISLWYIDILTGWLIAAFALLIEAMLIGIGFFV-FVMVRI 81 >gi|242398766|ref|YP_002994190.1| Flagella accessory protein [Thermococcus sibiricus MM 739] gi|242265159|gb|ACS89841.1| Flagella accessory protein [Thermococcus sibiricus MM 739] Length = 570 Score = 33.9 bits (77), Expect = 9.7, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 2/177 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ-HLGLSL 65 + K P + + + ++ + + + +P+ + ++ + Sbjct: 78 KKVKINSKIPYFVTYFAVLSTSEVGRNELIHTLAKEKVLEPISRDMEKIYHLIAKFNRGM 137 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ +V+ P + S F ++ G L E L +I+ D + ++ Sbjct: 138 PEAFRFLVKRTPSKVFSDFLERLAYSLDSGVELREYLLQEQKIVMDDYQTFYEGALYDLD 197 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + P + + V M + I++ M Sbjct: 198 VFKEVYSSLIISVVFMVTFIIIGPIITGQDLVTLTIFTFILVMVVEMGVLILIKHKM 254 >gi|326777721|ref|ZP_08236986.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658054|gb|EGE42900.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 280 Score = 33.9 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 + G +A A + PV R LG +E+ R + + Sbjct: 145 CIAVGAGPREAAAEVGDSIGGPVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAGPLA 201 Query: 86 TVISVQSQLGGNLSEALANL 105 + G +E +A L Sbjct: 202 RCLHRAGSTGAPAAEPVARL 221 >gi|228916876|ref|ZP_04080439.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842799|gb|EEM87884.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 33.9 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61 LI K + F + GL V +A+ +++ Q P + E R+ Sbjct: 176 FLILKHSHYFATQL-------SGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L I++ +E+S+ I Q GNL+ L + S ++ ++ K K Sbjct: 229 GEPLQSIIAKSG--YYEEELSY----IITHGQANGNLAIELGDYSDLIMEKMEQKMK--- 279 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + I L C+ +V + + Sbjct: 280 -----RMLVIIQPILFTCIGGIVVLMYLAMIMPMFQ 310 >gi|126640410|ref|YP_001083394.1| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC 17978] Length = 376 Score = 33.9 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%) Query: 1 MKHLIKKRTAKFLDDFPN---ALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51 ++++ +KR F LDI + ++AG+P+ ++ +P E Sbjct: 15 VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 74 Query: 52 FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 + G + + ++ + ++ + F +++ + G L L ++ Sbjct: 75 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 129 Query: 111 DRKNMKAKVQA 121 + +K K++ Sbjct: 130 KSELLKQKIKK 140 >gi|41057225|ref|NP_958251.1| hypothetical protein VWBp09 [Streptomyces phage VWB] gi|39656048|gb|AAR29699.1| hypothetical protein [Streptomyces phage VWB] Length = 359 Score = 33.9 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 8/44 (18%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 D+ R+ RAG + SDP+ E R++ + G+ Sbjct: 269 DVWRRANRAGH--------VARDGSDPLSQELRQIADDIAKGVD 304 >gi|258540644|ref|YP_003175143.1| ABC transporter permease [Lactobacillus rhamnosus Lc 705] gi|257152320|emb|CAR91292.1| ABC transporter, permease protein [Lactobacillus rhamnosus Lc 705] Length = 352 Score = 33.9 bits (77), Expect = 9.9, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 108 ILRDR-KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166 ++R + +A + AL + A ++ + L F P M N P + + Sbjct: 264 VMRAQGIRTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAMPFYANPPLF-IAIA 322 Query: 167 VAAAFMLI--GIMVMRLMINFD 186 A M + G+ +R +++ D Sbjct: 323 AALILMSLVGGLFSLRRILHID 344 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.317 0.173 0.459 Lambda K H 0.267 0.0529 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,693,205,761 Number of Sequences: 14124377 Number of extensions: 153508624 Number of successful extensions: 1000387 Number of sequences better than 10.0: 5045 Number of HSP's better than 10.0 without gapping: 3458 Number of HSP's successfully gapped in prelim test: 2933 Number of HSP's that attempted gapping in prelim test: 991182 Number of HSP's gapped (non-prelim): 8643 length of query: 187 length of database: 4,842,793,630 effective HSP length: 131 effective length of query: 56 effective length of database: 2,992,500,243 effective search space: 167580013608 effective search space used: 167580013608 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 78 (34.3 bits)