BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 Query: 181 LMINFDV 187 LMINFDV Sbjct: 181 LMINFDV 187 >gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 142/186 (76%), Positives = 173/186 (93%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L D RGH++LG+AA M++G ++MR Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321 Query: 181 LMINFD 186 MINFD Sbjct: 322 TMINFD 327 >gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42] Length = 335 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 115/184 (62%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH ++G +A +M IGI+VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV ALS Sbjct: 212 SIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 335 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL Sbjct: 152 LIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQALS Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 335 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 114/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+++GLP++DA+ +I + ++PV+SEF RVIE Q +GL Sbjct: 152 LIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652] gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512] Length = 335 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3] Length = 335 Score = 250 bits (639), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRRVIE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5] gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771] Length = 335 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++ PNALD+I RS+++GLP++DA+ +I + ++PV+SEFRR+IE Q +GL Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ ++ +RM +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH ++GV+A +M IGI VMR M+ Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 336 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 111/183 (60%), Positives = 152/183 (83%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL+ Sbjct: 154 IKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLN 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALSM Sbjct: 214 VPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALSM 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G +A +M IGI +MR MIN Sbjct: 274 EAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMIN 333 Query: 185 FDV 187 FD+ Sbjct: 334 FDI 336 >gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 336 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 154/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPNALD++VRS+++GLP++DA+ +I +PV++EFRRV+E+Q +GL Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021] gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 336 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 336 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFLD+FPN+LD++VRS+++GLP++DA+ +I +PVR+EFRRV+E+Q +GL Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ +RM+ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+TLVY TSP YM VL DPRGH+++G +A +M IGI VMR MI Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332 Query: 184 NFDV 187 NFD+ Sbjct: 333 NFDI 336 >gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 335 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 153/184 (83%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIK+R KFL++FPNALD+I RS+R+GLP++DAV ++ ++ +PVR+EFRRV+ETQ +GL Sbjct: 152 LIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVGL 211 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S++++ +RM +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV ALS Sbjct: 212 SMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVALS 271 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LVY TSP YM +L DPRGH+++ +A +M G+++MR M+ Sbjct: 272 MEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQMV 331 Query: 184 NFDV 187 NFD+ Sbjct: 332 NFDI 335 >gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4] Length = 334 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 151/184 (82%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++R KFL +FPNALD++VRS+++GLP++DA+ +I + +PV++EFRRV++ Q LG+ Sbjct: 151 LIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQLGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E+ RM MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV ALS Sbjct: 211 TVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVSALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V+ LVY +SP Y+ VL DPRGHM+LG +A +M IGI VMR MI Sbjct: 271 MEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMRNMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 334 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 109/184 (59%), Positives = 150/184 (81%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+ Sbjct: 151 LLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + I RM+ MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV ALS Sbjct: 211 GIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LV+FTSP Y+++L D RGH++LG +A +MLIGI +MR MI Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 334 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 107/184 (58%), Positives = 151/184 (82%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 ++K+R KFL++FPNALD++ RS+++GLP++DAV +I +PV++EF+RV++ Q +G+ Sbjct: 151 ILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + I RM+ +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV ALS Sbjct: 211 GIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALS 270 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LPF V LV+FTSP Y++VL D RGH++LGV+ +MLIGI +MR MI Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMRQMI 330 Query: 184 NFDV 187 NFD+ Sbjct: 331 NFDI 334 >gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG 3301] Length = 336 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 110/185 (59%), Positives = 142/185 (76%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +G Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS+ E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V LVY TSP YM +L GHMLLGVAA ML GI +M+ M Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDM 336 >gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43] Length = 336 Score = 233 bits (594), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 105/185 (56%), Positives = 148/185 (80%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L +R FL +FPNALDI+VRS+++GLP++DA+ +I + +PVR+EF+R++++Q +G Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ E+ +R+ +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LPF V+ LVY TSP Y+ +L D RGH++LG +A +M IGI+VMR M Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331 Query: 183 INFDV 187 INFD+ Sbjct: 332 INFDI 336 >gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188] Length = 337 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 108/182 (59%), Positives = 141/182 (77%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KFL++FPNALD+IVR+ RAGLP++D + +I ++ +PV+SEF++V+E Q +GLS+ Sbjct: 156 KRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLSI 215 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ +M MP E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSME Sbjct: 216 PEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSME 275 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA IIG+LPF V LVY TSP YM +L GHMLLG+AA ML GI +M+ MINF Sbjct: 276 AKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMINF 335 Query: 186 DV 187 D+ Sbjct: 336 DM 337 >gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099] gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099] Length = 337 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/181 (59%), Positives = 143/181 (79%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +G+S+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQMGISIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG AA +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 337 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 107/185 (57%), Positives = 146/185 (78%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PVR+EFRR++E Q LG Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L ++E+ RM MP EV+FF V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 SMEAKASA IIG+LP V+ LVY TSP Y+ L ++ GH++LG++A +M IGI VMR M Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332 Query: 183 INFDV 187 +NF+V Sbjct: 333 MNFEV 337 >gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 337 Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 143/181 (79%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I ++ +PV++EFRR++++Q +GLS+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQMGLSIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 337 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 142/181 (78%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R FL++FPNALDIIVR+V++GLP++DAV +I +S +PV++EFRR++++Q +GLS+ Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMGLSIP 216 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ RM MP E SFF VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV ALSMEA Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEA 276 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 KASA IIG+LPF V+ LVY +SP Y+ L N G+++LG +A +M IGI+VMR M+NF+ Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336 Query: 187 V 187 V Sbjct: 337 V 337 >gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506] Length = 335 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 98/182 (53%), Positives = 144/182 (79%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F + FP A+D+IVR V+AGLP++D + +V DPV SEF++V+E Q +G++L Sbjct: 154 KKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQMGVTL 213 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+QA+SME Sbjct: 214 GDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSME 273 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA IIGS+P V++++Y TSP Y+NVL++DPRG+++L +A +MLIG+++M+ MINF Sbjct: 274 AKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMKKMINF 333 Query: 186 DV 187 D+ Sbjct: 334 DI 335 >gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion system [Aurantimonas manganoxydans SI85-9A1] Length = 335 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 98/181 (54%), Positives = 141/181 (77%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q +G+ + Sbjct: 154 KKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQMGVPI 213 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++ ++ R +P E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQA+SME Sbjct: 214 SEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSME 273 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKAS IIG+LP V+ LVY T+P Y++VL GH++L V+ +M G+ VM+ MI+F Sbjct: 274 AKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMKKMISF 333 Query: 186 D 186 D Sbjct: 334 D 334 >gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5] gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5] Length = 325 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 102/186 (54%), Positives = 139/186 (74%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFLD P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V +VYF SP Y+++L +P G ++L V+ A+M G+M+M+ Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318 Query: 181 LMINFD 186 MINFD Sbjct: 319 KMINFD 324 >gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242] Length = 326 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 99/187 (52%), Positives = 135/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KF+++FP ++D+I+R V+AGLPV+D VI + +PVR EFRR+IE+Q Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E++ R +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+ Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V VY T+P YM VL G +++ +M IG+ +MR Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319 Query: 181 LMINFDV 187 MINFD+ Sbjct: 320 KMINFDI 326 >gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2] Length = 323 Score = 207 bits (528), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 97/186 (52%), Positives = 136/186 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL+ P+A+D+IVR V+AGLP+ D++ V+V S +P+RSEFR +IETQ Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LP V +VY SP Y+++L P G +L A +M GI+VM+ Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316 Query: 181 LMINFD 186 MINFD Sbjct: 317 KMINFD 322 >gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris CGA009] gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 324 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 96/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R KFL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 98/186 (52%), Positives = 135/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R +KFL P+A+D+IVR ++AGLP+ +++ V+ S +P+RSEF +IETQ Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ SR+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G ++L +M +GIMVM+ Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333 Query: 181 LMINFD 186 MINFD Sbjct: 334 KMINFD 339 >gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 328 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 140/186 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +LIK+R F ++F NA+D+IVR V++GLPV+D + +I +S +PVR+EF+ ++E Q Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++L + ++++ MPL EV+FF V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLP V L+YF+SPGYM+VL + G+M++ +M IG++VM+ Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321 Query: 181 LMINFD 186 MI+F Sbjct: 322 KMIDFK 327 >gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/186 (51%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L ++R +FL P+A+DIIVR ++AGLP+ D++ ++ S +P+RSEF +IETQ Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + E+ +R+ MP+ E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+++L P G +LL +A +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus trichosporium OB3b] Length = 322 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 93/187 (49%), Positives = 138/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R AKF++ FP ++DII+R ++AGLPV D +I ++ +PVRSEFR+++E+Q Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLS+ E+ R MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+ Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+S EAKASA IIGSLPF V V+FT+ YM VL + G+M++ + +M +G+ +M+ Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315 Query: 181 LMINFDV 187 MI+F++ Sbjct: 316 NMIDFEI 322 >gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1] Length = 324 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 94/183 (51%), Positives = 134/183 (73%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R KFL P+A+D+IVR ++AGLP+ D++ V+ + +P+RSEF +IETQ +G+ Sbjct: 141 LKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQAIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L+++ +R+ MPL E +FF VI++Q + GGNLSEAL+NLS++LRDRK M K+QA+S Sbjct: 201 PLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIG+LP V LVY T+P Y+++L P G +LL +A +M GI VM+ MI Sbjct: 261 MEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens AM1] Length = 323 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1] gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1] Length = 323 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum CM4] Length = 323 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2] Length = 324 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KF++ P+A+D+IVR ++AGLP+ D++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VIS+Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium sp. ORS278] gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/186 (50%), Positives = 134/186 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI+VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium extorquens DM4] Length = 323 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K ++R F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E+Q Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLS+S++I RM +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V Y +SP Y +L G + L ++ +ML G+ VM+ Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316 Query: 181 LMINFDV 187 MINFD+ Sbjct: 317 KMINFDI 323 >gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia alexandrii DFL-11] Length = 339 Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 93/181 (51%), Positives = 132/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R FL++ PN +DIIVR V+AGLP+SD V V+ ++ +PV +EFR+V ETQ +G+SL Sbjct: 158 KRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVSL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++S+M +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS E Sbjct: 218 AEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG+LPF V +++F +P YM +L G +++ +M GIMVMR MINF Sbjct: 278 AKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMINF 337 Query: 186 D 186 D Sbjct: 338 D 338 >gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris BisB18] Length = 324 Score = 196 bits (499), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 131/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P++SEF ++ETQ Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M IGI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 QMINFD 323 >gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1] Length = 324 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 132/186 (70%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R KFL P+A+D+IVR ++AGLP+ +++ V+ + +P+RSEF +IETQ Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MPL E +FF V+++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY ++P Y+++L P G ++L +M +GI VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris BisA53] Length = 324 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/186 (49%), Positives = 129/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R FL P+A+D+IVR ++AGLP+ D++ V+ + +P+R+EF +++TQ Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ R+ MPL E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G M+L +M IG+ VM+ Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001] gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001] Length = 323 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 136/187 (72%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K+R A F+++ PNA+D++VR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL +S++I RM +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M K+Q Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF + Y +SP Y ++L G + L ++ +ML G++VM+ Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316 Query: 181 LMINFDV 187 MI+FDV Sbjct: 317 KMISFDV 323 >gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5] Length = 324 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R +FL+ P+A+D+IVR ++AGLP+ D++ V+ S +P+++EF +IETQ +G+ Sbjct: 141 LKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQTIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+QA+S Sbjct: 201 PIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +M GI+VM+ MI Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 130/186 (69%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL KR AKF + PNA+D++VR +R G+PV D ++ ++ +PVRSEFR V+ETQ Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GLSL E+ +R+ +P EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR M+ KVQ Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA II LPF V+ + TSP Y+++L G + L AA +M IGI ++ Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318 Query: 181 LMINFD 186 MI F+ Sbjct: 319 KMIAFE 324 >gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum gilvum SL003B-26A1] gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum gilvum SL003B-26A1] Length = 339 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR FL++ PNA+DIIVR V+AGLP+ D + ++ ++ DPV EFR+++E Q +GL+L Sbjct: 158 RKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQVMGLTL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ R+ +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ALS E Sbjct: 218 TEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF VS ++Y +P Y+ +L + G+M++ +M IG MVM+ MINF Sbjct: 278 AKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMKNMINF 337 Query: 186 D 186 D Sbjct: 338 D 338 >gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255] Length = 324 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ +G+ Sbjct: 141 LKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQAIGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 MEAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VM+ MI Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMKKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 327 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 88/172 (51%), Positives = 126/172 (73%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 +FPNA+D+IVR V+AGLP+ D + ++ ++ +PV+SEFR ++E Q LG+ L +++ R+ Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 MPL E FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +LP V +LVY TSP YM +L P G +L +ML+G ++MR MINFD Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326 >gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1] gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1] Length = 338 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 135/181 (74%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F ++F NA+D+IVR +++GLPV D + +I ++ +PV+SEF +++ Q LG+SL Sbjct: 157 KRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGISL 216 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ R+ +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S E Sbjct: 217 DEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSE 276 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG+LPF VS +Y TSP YM++L + G ++L A +M +GI+VMR MINF Sbjct: 277 AKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMINF 336 Query: 186 D 186 D Sbjct: 337 D 337 >gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 188 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 134/187 (71%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I ++ +P+RSEFR +E Q Sbjct: 2 LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGL++ ++I RM +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M K+Q Sbjct: 62 LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIG+LPF V+ Y +SP Y +L G + L ++ +M +GI VM+ Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181 Query: 181 LMINFDV 187 MI+FDV Sbjct: 182 KMISFDV 188 >gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A] gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A] Length = 324 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/183 (50%), Positives = 131/183 (71%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R FL P+A+D+IVR ++AGLP+ +++ V+V S +P++SEF +IETQ +G+ Sbjct: 141 LKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQAVGM 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E+ SR+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K++A+S Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EAKASA IIGSLP V LVY ++P Y+ +L P G ++L +A +M GI+VMR MI Sbjct: 261 TEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMRKMI 320 Query: 184 NFD 186 NFD Sbjct: 321 NFD 323 >gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614] Length = 340 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R FL++ PN +DIIVR V+AGLP+SD + V+ ++ DPV +EFR++ ETQ +G+SL Sbjct: 159 KRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGISL 218 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS E Sbjct: 219 ADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAE 278 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF V ++Y SP Y+ VL G++++ +M GIMVMR MINF Sbjct: 279 AKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMINF 338 Query: 186 D 186 D Sbjct: 339 D 339 >gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4] gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4] Length = 340 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 131/181 (72%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F+++ PN +DIIVR V+AGLP+ D V V+ ++ DPV +EF +++ETQ +G+SL Sbjct: 159 KKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQKMGVSL 218 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E+ ++ +PL E +FF+ V+++Q GG LSEAL NLSR+LR RK +K K+ ALS E Sbjct: 219 AEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSE 278 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIG++P +S ++F +P Y+N+L+ GH+++ +MLIGI+VMR MINF Sbjct: 279 AKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMRQMINF 338 Query: 186 D 186 D Sbjct: 339 D 339 >gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14] gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14] Length = 324 Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 91/186 (48%), Positives = 128/186 (68%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R FL P+A+D+IVR ++AGLP+ +++ V+ S +P++SEF +IETQ Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E+ +R+ MP+ E +FF VI++Q + GGNLSEAL NLS++LRDRK M K+Q Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEAKASA IIGSLP V LVY T+P Y+ +L P G ++L +M GI VM+ Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317 Query: 181 LMINFD 186 MINFD Sbjct: 318 KMINFD 323 >gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii HTCC2633] Length = 331 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 126/182 (69%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R KF ++F +ALDIIVR V++GLP+++ + +I + PV+ EF+ ++E +G+ + Sbjct: 150 KGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLAVGVDV 209 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV ALS E Sbjct: 210 EEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVSALSSE 269 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASAWIIGSLP V +V SP YM L+ P GH LL +ML GI+VMR MINF Sbjct: 270 AKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMRSMINF 329 Query: 186 DV 187 + Sbjct: 330 KM 331 >gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062] gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062] Length = 339 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 134/182 (73%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR +FL++FPNA+DIIVR +++G+P+ D + + ++ DPV +EF V++ +G+ L Sbjct: 158 KKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQMGMPL 217 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E+I + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++A+S E Sbjct: 218 AEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQE 277 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK+SA IIGSLPF V+ L++ SP Y+ +L++ G +L+G+ +M IGI+VMR MI+F Sbjct: 278 AKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMRKMIDF 337 Query: 186 DV 187 + Sbjct: 338 KI 339 >gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021] gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti BL225C] Length = 333 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/179 (49%), Positives = 129/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332 >gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti AK83] Length = 333 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 88/179 (49%), Positives = 129/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G +++ +M IGI+VMR MINFD Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332 >gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130] gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130] Length = 332 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/180 (48%), Positives = 123/180 (68%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F FPNA+D+IVR +++GLP++D + +I S +PVR EFR++IE +G+ + Sbjct: 151 KKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQMGIPV 210 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ R+ + +P E +FFS VI++QS GGNLSEAL NLS++LR+R+ M K+QA S E Sbjct: 211 PEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQAFSSE 270 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S IIG+LPF V+ +V+ TSP Y+ L GH +L A M GI+VM+ MINF Sbjct: 271 AKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMKKMINF 330 >gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46] gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46] Length = 322 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 141/187 (75%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I ++ +PVR+EFR ++E+Q Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+SLSE+ +++ MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L YF+SP Y+++L G + + ++ +M++G++VM+ Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814] gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814] Length = 331 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 121/183 (66%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF F + +D+IVR V++GLP+ + + +I +S P+ +EF+RVI+ +G + Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +S+S M MPL EV+FF VI +Q Q GGNLSEAL NLS +LR RK + KV+ALS Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EAKASA IIG+LP V LVYF+SP Y+ +L P GH +L V A M GI VM+ M+ Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328 Query: 185 FDV 187 DV Sbjct: 329 LDV 331 >gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 137/187 (73%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I ++ DPV++EFR ++E+Q Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +GL L E+ +++ MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M KV Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A+SMEA+ASA II SLPF V+ L Y +SP Y+++L G + + + +MLIG++VM+ Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315 Query: 181 LMINFDV 187 MI F++ Sbjct: 316 RMITFEI 322 >gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans ATCC 51888] gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 332 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 127/183 (69%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L K+R AKF NA+D++VR V++GLP+++ + VI +S +P+ EFR V+E Q LG Sbjct: 148 KLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLG 207 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L++++ RM MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ + KV+AL Sbjct: 208 VPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKAL 267 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S EAKASA ++ SLP V +VY +SPGYM L G ++ + A +M IG++VM+ M Sbjct: 268 SAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKM 327 Query: 183 INF 185 INF Sbjct: 328 INF 330 >gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31] gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31] Length = 325 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/180 (48%), Positives = 127/180 (70%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K RT KF + F +A+DIIVR +++GLPV+D + +I + +P+ EFR ++E +G+S+ Sbjct: 144 KARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMGMSM 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM MP E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M K++ALS E Sbjct: 204 DQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA+IIG+LP V L+ T+P YM + D RGH++L VAA +M +GI VMR MINF Sbjct: 264 AVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKMINF 323 >gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000] gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15] gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15] gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000] Length = 325 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 125/185 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K RT KF + F +A+DIIVR +++GLPV D + +I + +P+ EFR + E Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA+IIG LP V TL+ TSP YM + DPRGH++L +A +M IGI VMR Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318 Query: 181 LMINF 185 MINF Sbjct: 319 NMINF 323 >gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis excentricus CB 48] gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis excentricus CB 48] Length = 326 Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 87/186 (46%), Positives = 125/186 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L K+RT KF +F +A+DI+VR +++GLPV D + +I + P+ EF+R+ E Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L S+ +M MP E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++ Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EA ASA IIG LP V ++Y T+PGYM L+ DPRG+ +L A +ML GI +MR Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319 Query: 181 LMINFD 186 MINF Sbjct: 320 KMINFK 325 >gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444] gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444] Length = 339 Score = 180 bits (456), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 127/187 (67%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + LIK R K ++ F +ALDIIVR VR+GLP+++ + VI +S +P+R EF + Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+ Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS EAKASA IIGSLP V +V+ T+P Y+ L GH++L VA M GI VMR Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 333 NMMNFDM 339 >gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter segnis ATCC 21756] gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 124/182 (68%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + R KF + F +A+DIIVR +++GLP+ D + +I +S +P+ EFR + E +G+ Sbjct: 142 LAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVAMGV 201 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ +M MP E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ALS Sbjct: 202 PLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALS 261 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG+LP V L+ TSP YM L DPRGH++L AA +M IG++VMR MI Sbjct: 262 AEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMRKMI 321 Query: 184 NF 185 NF Sbjct: 322 NF 323 >gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419] gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419] Length = 332 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 93/179 (51%), Positives = 130/179 (72%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AKF +FPNA+D+IVR ++AGLP+ D + VI ++ +PV+ EF +++ Q LG+ + E Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ RM MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +SA IIG+LPF V+ VYF SP YM +L G ++L +M IGI+VMR MINFD Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331 >gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein secretion [Sinorhizobium fredii NGR234] gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 332 Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/180 (50%), Positives = 131/180 (72%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F +FPNA+D+IVR ++AGLP++D + VI ++ +PV+ EF + Q LGL + Sbjct: 152 RRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLPVD 211 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R+ MPL E FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EA Sbjct: 212 EAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEA 271 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K+SA IIG+LPF V+ VY TSP YM++L G M+L +A +M IG ++MR MINFD Sbjct: 272 KSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMINFD 331 >gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 122/184 (66%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R A+F F +ALDI+VR +R+GLP+ + +A+I + +P+ EFR V+E Q LGL Sbjct: 96 LGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLGL 155 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SL ES++R V P + +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A S Sbjct: 156 SLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAFS 215 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIGSLP V+ L+ P Y+ +L + P GH+LL M +G +VMR MI Sbjct: 216 SEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKMI 275 Query: 184 NFDV 187 NFD+ Sbjct: 276 NFDL 279 >gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10] gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10] Length = 327 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 124/181 (68%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F +F NALD+I R V++GLP+++ + ++ +S +PV++EF +++E +G+SL Sbjct: 147 RRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIAVGVSLP 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + RM MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ ALS EA Sbjct: 207 DGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIGALSSEA 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K+SA IIGSLP V +VY T+P YM + P G ++L +M IGIMVMR MINF Sbjct: 267 KSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMRGMINFK 326 Query: 187 V 187 + Sbjct: 327 I 327 >gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas sp. BAL3] Length = 326 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/184 (47%), Positives = 126/184 (68%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K R KF +FPNA+D+IVR +++GLPV + +I +S P+ F++++E +G+ Sbjct: 143 LAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVGM 202 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L +++ +M MP E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+ALS Sbjct: 203 TLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALS 262 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA II SLP V T+V FTSPGYM L D RG+ LL +A A M GI VM+ MI Sbjct: 263 SEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRMI 322 Query: 184 NFDV 187 +F + Sbjct: 323 SFKI 326 >gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein [Asticcacaulis biprosthecum C19] Length = 337 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 121/179 (67%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF ++FPNA+DI+VR +++GLPV D + +I +S P+ EF R++E +G+S+ Sbjct: 158 RLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVGVGMSVEG 217 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ +M +P E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ALS EA Sbjct: 218 ALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAI 277 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 ASA IIG LP V ++ T P Y+ + DPRG ++L A +M +GI +MR MINF Sbjct: 278 ASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMRKMINFK 336 >gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 326 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/181 (45%), Positives = 124/181 (68%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF +F NA+D+IVR +++GLPV D +I +S PV EF+ ++E +GL+L Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +M +P E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M K++ALS E Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA IIGSLP V TLV T+P YM ++ D RG ++L +A +M +GI++M+ MI+F Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324 Query: 186 D 186 Sbjct: 325 K 325 >gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis HTCC2503] Length = 330 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/182 (46%), Positives = 127/182 (69%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF ++F NA+D+IVR V++GLPV++ + +I + PV+ EF+ ++E Q +GL+L Sbjct: 149 RKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQRIGLTL 208 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ R+ MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M K+ ALSME Sbjct: 209 EQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSME 268 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AKASA I+ ++PF VS LVY +P Y+ L + G +L A +MLIGI+VM+ MI+ Sbjct: 269 AKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMKNMISI 328 Query: 186 DV 187 V Sbjct: 329 KV 330 >gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein [Brevundimonas diminuta ATCC 11568] Length = 327 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 119/181 (65%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R KF F +A+DI+VR ++ GLPV D +I +S +P+ EFR ++E +GL+L Sbjct: 146 KARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMGVGLTL 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ +M MP E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M K++ALS E Sbjct: 206 AQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSE 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A ASA II SLP V LV ++P YM ++ D RG ++L AA +M G+ VM+ MI+F Sbjct: 266 AIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMKRMISF 325 Query: 186 D 186 Sbjct: 326 K 326 >gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1] Length = 330 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 121/181 (66%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L Sbjct: 150 KRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQA + EA Sbjct: 210 EALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQAYAAEA 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +ASA IIGSLP V ++ +P Y+ +L G++LL + +G++VMR MINFD Sbjct: 270 RASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMRNMINFD 329 Query: 187 V 187 + Sbjct: 330 I 330 >gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum magnetotacticum MS-1] Length = 331 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/181 (44%), Positives = 120/181 (66%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F F +ALD++VR +R+GLP+ + +A+I + DPV +EFR++ E +GL+L Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++R V MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +ASA IIGSLP V ++ +P Y+ VL G++LL + G+MVMR MINFD Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330 Query: 187 V 187 + Sbjct: 331 I 331 >gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1] Length = 305 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 113/184 (61%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+ +R +FL F A+ +IVR +RAGLPV++ V V+ + PV EFRRV + LG Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + ++ R + L E F + ++VQ + GGNL+E+L NL ILR R+ M+ K++A+S Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA ASA IIG LPF ++ L+ SP YM VL P G +++ A + +G ++MR M+ Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301 Query: 184 NFDV 187 F++ Sbjct: 302 RFEI 305 >gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum JL354] Length = 323 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 123/185 (66%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +K+RTA+F FP+A+D++VR +R+GLPV++ +AV+ + PV EF+ +IE +G Sbjct: 140 FMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIGR 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+ E++ + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 200 SMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+GSLPF V ++++ +P Y+ D R M+ G+ +M +G+ +M M Sbjct: 260 SESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDER-LMIAGIGGLVWMSLGVFIMSKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594] Length = 323 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 I KRTA F FP+A++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G Sbjct: 140 FINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIGK 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ E + + + E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 200 TMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+G+LPF V ++++ +P Y++ D R +++G+ +M IG +M M Sbjct: 260 SESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDER-LIVIGLGGMVWMSIGAFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas sp. S17] Length = 327 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 116/183 (63%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +RT KF+ FP+A++++VR +R+GLP+++ ++V+ + PV EFR V + +G + Sbjct: 145 INRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMKIGRT 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + E FF I++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 205 MDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIKAMSS 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E+KASA+IIG+LPF V +++ + YM DPR ++ G +M +G+ +M MIN Sbjct: 265 ESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMSRMIN 324 Query: 185 FDV 187 F++ Sbjct: 325 FEI 327 >gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens DSM 19370] Length = 323 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR F+ FP+AL+++VR +R+GLP+S+ + V+ + PV EF+ V + LG + Sbjct: 141 INKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIRLGRT 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +++ + L E SFF +++Q + GGNL+E LANL+ +LR R MK K++A+S Sbjct: 201 MEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183 E+KASA+I+GSLPF V L+Y +P Y+ D R M+ G+ L +G +M M+ Sbjct: 261 ESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDER-LMVAGIGGLIWLSMGAFIMSRMV 319 Query: 184 NFDV 187 NF++ Sbjct: 320 NFEI 323 >gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 324 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L K+R A+F+ FP+A++++VR +RAGLP+++ + + + PV SEF+ V + +G Sbjct: 141 LAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMRIGR 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L ++ + E FF +++Q + GGNL+E L NL+ +LR R MK K+ A+S Sbjct: 201 TLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMS 260 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+IIG LPF V L+ F SP YM D R M+ G +M IG +MR M Sbjct: 261 SESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQR-LMIAGAGGLIWMSIGAYIMRQM 319 Query: 183 INFDV 187 INF++ Sbjct: 320 INFEI 324 >gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21] Length = 323 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKRT +F F +A++++VR +R+GLPV++ + V+ + PV EF+ ++E +G + Sbjct: 141 IKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIGRT 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ES+ + + E +FF +++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 201 MEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 E+KASA+I+GSLPF V L+++ +P Y+ D R ++ G+ +M IG+ +M M+ Sbjct: 261 ESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDR-LIVTGLGGLTWMGIGVFIMAKMV 319 Query: 184 NFDV 187 +F++ Sbjct: 320 SFEI 323 >gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 317 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 112/178 (62%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A F D P ALDI R +RAG PV+D++A++V + P+ EF R + +G +L E++ Sbjct: 140 ATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVRMGNTLPETL 199 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 R+ +PL EV+FF+ ++Q++ GGNL E + NL+ LR+R+ ++ K +ALS EA+AS Sbjct: 200 ERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARAS 259 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A I+ +LPF V+ L+ + Y+ L +DPRG + AA+ + +GI VM M +V Sbjct: 260 AVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMVRMGKLNV 317 >gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1] Length = 323 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 119/185 (64%), Gaps = 2/185 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 IKKRT F F + ++++VR +R+GLPV++ +AV+ + PV EF+ ++E +G Sbjct: 140 FIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIKIGK 199 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ +S+ + + E +FF+ +++Q + GGNL+E L+NL+ +LR R MK K++A+S Sbjct: 200 TMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMS 259 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182 E+KASA+I+GSLPF V L+Y +P Y+ + R M+ G+ +M IGI +M M Sbjct: 260 SESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEER-LMVTGLGGLVWMSIGIFIMAKM 318 Query: 183 INFDV 187 ++F++ Sbjct: 319 VSFEI 323 >gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 310 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR A+F FP+A+D++VR +R+GLPV++ V+ + PV EF+ V+E +G + Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + E FF I +Q + GGNL+E LANLS +LR R MK K++A+S Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 EAKASA+I+G+LPF V +V+ +P Y+ + R ++ G+ +M IG +M M+ Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQR-LIVAGIGGLIWMSIGAGIMAKMV 306 Query: 184 NFDV 187 NF++ Sbjct: 307 NFEI 310 >gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 324 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR F+ P+ALD++VR +R+GLPV++ + V+ + PV EF+ V + +G + Sbjct: 142 INKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVGRT 201 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + E++ + L E +FF +++Q + GGNL+E L+NLS +LR R MK K++A+S Sbjct: 202 MEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSS 261 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183 E+KASA+I+G+LPF V L+Y+ +P Y+ D R ++ G+ ++ IG +M M+ Sbjct: 262 ESKASAYIVGALPFIVFALIYWINPVYLGKFFVDER-LIIAGLGGLTWLGIGAFIMAKMV 320 Query: 184 NFDV 187 +F++ Sbjct: 321 SFEI 324 >gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510] gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510] Length = 319 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 100/156 (64%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +RT +FLD P+A+D++VR+ RAG+PVS+A+ ++ +PVRSEFRRV + +G+ Sbjct: 136 LTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVSIGV 195 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + + L + FF + VQ + GG L+E L NLS ILR RK+M+ KV+AL+ Sbjct: 196 DLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVKALT 255 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 E + SA I+ SLPF L++ P Y+ L DP Sbjct: 256 AEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDP 291 >gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 205 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 115/184 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199 Query: 184 NFDV 187 N D Sbjct: 200 NLDT 203 >gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 205 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 20 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 80 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199 Query: 184 NFD 186 N D Sbjct: 200 NLD 202 >gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 202 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 17 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 76 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 77 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 136 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 137 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 196 Query: 184 NFD 186 N D Sbjct: 197 NLD 199 >gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9] Length = 204 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 19 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 78 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 79 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 138 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 139 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 198 Query: 184 NFD 186 N D Sbjct: 199 NLD 201 >gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14] Length = 200 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 15 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 135 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 194 Query: 184 NFD 186 N D Sbjct: 195 NLD 197 >gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 212 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 27 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 86 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 87 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 146 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 147 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 206 Query: 184 NFD 186 N D Sbjct: 207 NLD 209 >gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 217 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 32 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 91 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 92 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 151 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 152 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 211 Query: 184 NFD 186 N D Sbjct: 212 NLD 214 >gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 223 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 38 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 97 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 98 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 157 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 158 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 217 Query: 184 NFD 186 N D Sbjct: 218 NLD 220 >gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC 10229] gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1] gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243] gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei 1710b] gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13] Length = 331 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 331 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325 Query: 184 NFD 186 N D Sbjct: 326 NLD 328 >gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 216 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 115/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 31 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 90 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 91 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 150 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+N+L + GH +L +AA + +G+ ++R + Sbjct: 151 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 210 Query: 184 NFD 186 N D Sbjct: 211 NLD 213 >gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 326 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 114/181 (62%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F P AL+++ R++RAG + + ++V + +DP+R EF+ +E + G+ ++ Sbjct: 146 KRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFGMGVT 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N+S ++R+R +K ++Q LS E Sbjct: 206 TALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V+ ++ F +PGY+ +L DP G ++ A + +GI+V+R M+ + Sbjct: 266 RMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKMVRIE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis MSMB43] Length = 200 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 114/183 (62%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + +G Sbjct: 15 LIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + + + + L + SFF + +Q + GGNL+E L NLS I+R R++++ K +AL+ Sbjct: 75 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + ++ II ++PF ++ ++ + Y+++L GH +L +AA + IG+ ++R + Sbjct: 135 AEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRKIA 194 Query: 184 NFD 186 N D Sbjct: 195 NLD 197 >gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS] gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS] Length = 305 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F P ALD I RS+RAG +S A+ +I + DP+ EF+ V + + G+ Sbjct: 124 KKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMNFGIPF 183 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+ + + + ++SFF + +Q + GGNL+E L L+ +R+R ++ KV+ LS E Sbjct: 184 KEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVRTLSSE 243 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA ++GS+PF +T++ +P Y+ L N P+GH LL +A ML+G+ V+ M+ Sbjct: 244 GRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLNNMVKI 303 Query: 186 DV 187 V Sbjct: 304 KV 305 >gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58] Length = 332 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI KR ++F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +S+Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V ++ + + YM DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 332 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LI KR +F FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 KTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWMGI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 332 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 LIK R KF FP+AL+++ R +R+GLP+++ + V+ + PV EF+ + E +G Sbjct: 140 RLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIKIG 199 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ +++ + E FF +++Q + GGNL+E L+NL+ +LR R MK K++A+ Sbjct: 200 KTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAM 259 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174 S E+KASA+IIG LPF V L+ + + YM+ DP G ++G+ +M I Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWMSI 319 Query: 175 GIMVMRLMINFDV 187 G +M MINF++ Sbjct: 320 GAFIMAQMINFEI 332 >gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4] Length = 217 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 30 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 90 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209 Query: 182 MINFD 186 + N D Sbjct: 210 IANLD 214 >gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH] Length = 219 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 32 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 92 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211 Query: 182 MINFD 186 + N D Sbjct: 212 IANLD 216 >gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264] gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264] gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264] Length = 330 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 115/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+ALD+I+R+VRAG+PV+ A+ +S +PVR+ FR + + + Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + + + L + SFF +++Q + GGNL+E L NLS I+R R++++ K +A Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF ++ ++ + Y+ +L + GH +L +A + IG+ ++R Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322 Query: 182 MINFD 186 + N D Sbjct: 323 IANLD 327 >gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160] gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160] Length = 325 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 117/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + A+FL FP+ LD+I+R+VRAG+PV A++ ++ +PVRS FR + ++ L Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + V + + + SFF+ + +Q + GGNL E L NLS I+R R++++ K +A Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + ++ II ++PF + +Y + Y+++L + GH +L +AA ++IG+ +++ Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 325 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 4 LIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 L +KRT + L P+A D+I R++RAG A+ ++ + +P+ EF V + + Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+S+S+++ MV +P++++ +F + +Q + GGNL+E L +++ I+R+R + KV+ Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAW++G LPF + L+ +PGY++V DP G + GVA A ML GI+ MR Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318 Query: 181 LMINFDV 187 ++ V Sbjct: 319 KVVRIRV 325 >gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002] gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002] Length = 324 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 106/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR AKF + P+A+D++ R++RAG + ++ +I + SDP+ EFR + + G SL Sbjct: 144 KRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYGFSLQ 203 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P ++ + + +Q + GGNL+E L N+S ++R R + ++ L+ E Sbjct: 204 EAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEG 263 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SAWI+ LPF V+ +++ +PG+M VL D G M++ + ML GI MR +I Sbjct: 264 KLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQIIKIQ 323 Query: 187 V 187 V Sbjct: 324 V 324 >gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5] Length = 320 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ K + P AL+++ RS+RAG ++ A V+ G+ +PV EF R + Q LGLSL Sbjct: 139 RRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLSLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M P +V F+ +Q + GGNL+E L +S +R R K++AL+ E Sbjct: 199 QAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAW++G LPF V+ V +PGY+ L +P GH ++G A +GI+ +R + Sbjct: 259 GRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLTQL 318 Query: 186 DV 187 ++ Sbjct: 319 EI 320 >gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis MSMB43] Length = 328 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 114/185 (61%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + LI + +FL FP+A+D++VR+VRAG+PV A+ +S +PVRS F + + + Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L E + + + + + SFF+ + +Q + GG+L+E L NLS I+R R++++ K +A Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E K SA II ++PF + +Y + Y+ +L + GH +L +AA + +G++++R Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320 Query: 182 MINFD 186 + N D Sbjct: 321 IANLD 325 >gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 103/176 (58%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D P ALD I RS+RAG ++ A+ ++ + DP+ EF+ V + G+ ++I Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++FF + +Q + GGNL+E L LS +R R ++ K++ LS E +ASAW Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++GS+PF + ++ +PGY++VL P GH L A M +G +++ ++NF V Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322 >gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 108/182 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+ Sbjct: 151 KQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIPF 210 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I + + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E Sbjct: 211 KDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSE 270 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAWI+G++PF + ++ +PGY++VL + P+G L+ + M +GI V+ ++ Sbjct: 271 GRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQI 330 Query: 186 DV 187 V Sbjct: 331 KV 332 >gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B] gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B] Length = 327 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 112/181 (61%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F P AL+++ R+++AG S + ++V + ++P+R EF++ +E + G+ ++ Sbjct: 147 KRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFGMGVT 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E Sbjct: 207 VALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V V +PGY+N+L + G L + A M +G++V+R M+ D Sbjct: 267 RMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKMVRID 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio fructosovorans JJ] Length = 326 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 112/181 (61%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR +F P ALD++ R++RAG + + ++V + ++P+ SEFR +E + G+ ++ Sbjct: 146 KRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFGMGVT 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ + +++FF + +Q++ GGNL+E + N++ ++R+R +K +++ LS E Sbjct: 206 VALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AW++ LPF V V +PGY+ +L +P G +L+ V M +G++V+R M+ + Sbjct: 266 RMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKMVRIE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 329 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 112/182 (61%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R P ALD+I R++RAG S + + + S+P+ EFR V + + G SL Sbjct: 148 NQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEINYGTSL 207 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AK++ LS E Sbjct: 208 QQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSE 267 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+G +PF ++ L+ F +P +M+ L DP G ++L A M+IG++++R ++ Sbjct: 268 GRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLRRIVRI 327 Query: 186 DV 187 V Sbjct: 328 RV 329 >gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J] gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J] Length = 325 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 110/182 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K P+A+D+I R++RAG + A+ ++ + +P+ EF E + G+SL Sbjct: 144 RKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVSL 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++ + + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E Sbjct: 204 DEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+G LPFC + ++ +P +M VL DP G ++G+A M++G++ MR +I Sbjct: 264 GRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIRI 323 Query: 186 DV 187 V Sbjct: 324 RV 325 >gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 317 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G S Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKS 193 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ Sbjct: 194 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 253 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 254 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313 >gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110] Length = 330 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 110/187 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H +R A P+ALD++ R++RAG + +V +I + S+P+ EFR V + Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL ++++ M +PL ++ +F + +Q GGNL+E L NLSR++RDR + A+V+ Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SAWI+G +PF + L+ +P +M+ L DP G + M+IG +++R Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323 Query: 181 LMINFDV 187 ++ V Sbjct: 324 KIVKIRV 330 >gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 235 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 116/177 (65%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LI++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ +G Sbjct: 50 LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +AL+ Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 E + + II ++PF + ++ + Y+ +L GH +L +AAA ++IG++V+R Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIR 226 >gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii DSM 2075] Length = 322 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 114/181 (62%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + F FP A++++ R++RAG S + ++ + +PV SEF + E G ++ Sbjct: 142 KRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYSFGKTME 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R ++ V+ALS E Sbjct: 202 EALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S WI+ +P + ++Y+++P Y+N+ + +P G +L A ++GI+V++ +I Sbjct: 262 RLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIKQIIKMR 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter diazotrophicus PAl 5] Length = 319 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++ AK P+AL +IVRS+R G+P+S A+ +IVGQ ++ P EFR + + +G + Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKN 195 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ + LQE FF+T++++Q+Q GG L++ LA+ + ++R R + + AL+ Sbjct: 196 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 255 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 EA+ S +++G +PF + ++ +P YM V + GHMLLGV+A + +G MR ++ Sbjct: 256 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315 >gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp. MP5ACTX9] Length = 320 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 110/180 (61%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P+A+D++ R++RAG +S A+ V+ +S++P+ EF V + Q GL + Sbjct: 141 RLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQKFGLQFRD 200 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++ +P +++SF T I VQ + GG+L++ L +R++R+R ++ +++ + + + Sbjct: 201 ALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGR 260 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + WI+ +LP + L+ +PGY ++L +DP G +LLG +LIG ++ +++ V Sbjct: 261 LTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIISRVVDIKV 320 >gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 325 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 109/185 (58%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL KR + P+A+D+I R++RAG S A++++ + P+ EFR E + G Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ L Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SAW++G LPF + ++ +PG+MNVL DP G ++G A M G++ MR + Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666] Length = 325 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + P+ALD++ R++RAG A+ ++ + +DP+ EFR + + G+++ Sbjct: 144 RKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAM 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M +P ++ +F + +Q + GGNLSE L ++S I+RDR + +V+ LS E Sbjct: 204 PDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K SAW++ LPF + ++ T+P ++ VL DP G +L A M +GI+VMR +I Sbjct: 264 GKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKIIRI 323 Query: 186 DV 187 V Sbjct: 324 RV 325 >gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645] gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645] Length = 320 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R AKF P+AL++I R++RAG + ++ +S DP+ EF +V E Q+LG+SL Sbjct: 139 KARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLGVSL 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I+ M +P ++ FF T I +Q Q GG+L+E L + R++R R + +QAL+ E Sbjct: 199 EDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ LP + ++ +PGY+ L DP G+ +L VA LIG V++ +I+ Sbjct: 259 GRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKIIDI 318 Query: 186 DV 187 V Sbjct: 319 KV 320 >gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44] Length = 329 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 110/174 (63%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL Sbjct: 149 QRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEINYGTSLH 208 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS + Sbjct: 209 QALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADG 268 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + SAWI+G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 269 RMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322 >gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 108/181 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KR KF P+ALD+IVRS+RAG P + A+ ++ + DP+ +EF V + GLSL Sbjct: 143 NKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEITFGLSL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + + + + S +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ALS E Sbjct: 203 EQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWII P + ++ +P + + + P + + + L+G +M M+NF Sbjct: 263 GRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMYRMVNF 322 Query: 186 D 186 D Sbjct: 323 D 323 >gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 325 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 106/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + P+A+D+I R++RAG S A+ ++ + P+ EFR E + G++L Sbjct: 145 KRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYGIALD 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + AK++ LS E Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++G LPF ++ +P +M VL DP G ++G A M++G++ MR +I Sbjct: 265 RMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 322 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 107/181 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KR KF P+ALD+IVRS+RAG P S A+ ++ + DP+ +EF V + GLS+ Sbjct: 141 NKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITFGLSI 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + + + + S +S+QS+ GGNL+E LANLS ++R+R+ ++ K++ALS E Sbjct: 201 EQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWII P + + +P Y + ++P + + + L+G +M M+ F Sbjct: 261 GRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYRMVTF 320 Query: 186 D 186 D Sbjct: 321 D 321 >gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 328 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A F + P+ALD + R++RAG P ++ + ++ + PV EF + G + Sbjct: 148 KRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGNDVR 207 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ MP V T I + + GGNL+E L LSR++R R + K++ LS E Sbjct: 208 RAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEG 267 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++ ++PF ++ + TSP YM VLINDP GH L+ A MLIGI ++ +I Sbjct: 268 RMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIRIQ 327 Query: 187 V 187 V Sbjct: 328 V 328 >gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099] gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099] Length = 323 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 109/180 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF P+ALD+IVRS+RAG P + A+A++ + DP+ +EF V + GLSL Sbjct: 143 KRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEISFGLSLE 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ + + + S +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ALS E Sbjct: 203 QAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWII P + ++ +P + + +P + + ++ L+G +M M+NFD Sbjct: 263 RMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMYRMVNFD 322 >gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 118/185 (63%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 329 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 108/173 (62%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P ALD+I R++RAG S ++ + + ++P+ EFR V + + G SL + Sbjct: 150 RLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEINYGTSLQQ 209 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +++ + +P+ ++ +F + +Q + GGNL+E L+NLSR++R+R + AKV+ LS + + Sbjct: 210 ALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGR 269 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 SAW +G +PF ++ L+ +P +M+ L DP G +L AA M+IG++++R Sbjct: 270 MSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322 >gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 325 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 104/173 (60%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+A D+I R++RAG + ++ + DP+ EF V + + G+S+++++ MV Sbjct: 153 QLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALLNMVS 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P++++ +F + +Q + GGNL+E L ++S I+R+R + KV+ LS E + SAW++ Sbjct: 213 RVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSAWVLA 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LPF + L+ +PGY++V DP G L GVA ML GI+ MR ++ + Sbjct: 273 VLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325 >gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273] gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273] Length = 322 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 107/185 (57%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +R F D P ALD I R++RAG ++ A+ ++ + +P+ EF+ V + G Sbjct: 138 QLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIGFG 197 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E+I R+ M +++FF +++Q + GGNL+E L+R +R R ++ K++ L Sbjct: 198 IPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTL 257 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E +AS W++GS+PF + ++ +P Y+++L RG+ L+ + A M +G +V++ + Sbjct: 258 SSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLKRI 317 Query: 183 INFDV 187 + V Sbjct: 318 VQIKV 322 >gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 325 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 116/185 (62%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++ + +++PVRS FR + ++ + Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + ++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + GH++L +AA + IG++ + Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp. CCGE1002] gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1002] Length = 325 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 107/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+ D++ R++R+G + A+ ++ + ++P+ EFR V + + G+S+SE+++ + Sbjct: 153 QLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALTNLAT 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P++++ +F + +Q + GGNL+E L ++ ++RDR + KV+ LS E + SAW++G Sbjct: 213 RVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSAWVLG 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LPF V + +PG++NVL DP G ++ A+ ML GI+ MR ++ V Sbjct: 273 LLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325 >gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM 265] gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM 265] Length = 322 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 106/184 (57%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +R F D P ALD I R++RAG ++ A+ ++ + DP+ EF+ V + G+ Sbjct: 139 LADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIGFGI 198 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E+I R+ + +++FF +++Q + GGNL+E L+R +R R ++ K++ LS Sbjct: 199 PFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILS 258 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E +AS W++GS+PF + ++ +P Y+ L P+G+ ++ + A M +G +V++ ++ Sbjct: 259 SEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLKRIV 318 Query: 184 NFDV 187 V Sbjct: 319 QIKV 322 >gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383] gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383] Length = 325 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 119/185 (64%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+++ +FL+ FP+A+D+IVR+VRAG+PV+ A++++ +++PVR+ FR + ++ + Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L + +++ + + + SFF+ + +Q + GG+L E L LS I+R R++++ K +A Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ E + + II ++PF + ++ + Y+ +L + G+ +L +AA + +G++V+R Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317 Query: 182 MINFD 186 + D Sbjct: 318 ISKLD 322 >gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 326 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + P+A D+I R++RAG A+ ++ + P+ EFR + + G+S++ Sbjct: 146 KRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEINCGVSMN 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +V +P+ +V +F + +Q + GGNL+E L N++ I+R+R + AKV+ LS E Sbjct: 206 DALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF V + +PGY V D G + GVA + M +G++ +R + Sbjct: 266 RLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLRKTVRIR 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34] Length = 325 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 3/188 (1%) Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E Sbjct: 138 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 197 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K+ Sbjct: 198 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKI 257 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + LS E + SAWI+G LPF + L+ +PG+M VL DP G ++G A M+ G++ M Sbjct: 258 RVLSAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWM 317 Query: 180 RLMINFDV 187 R +I V Sbjct: 318 RKIIRIRV 325 >gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655] Length = 330 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 270 KLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329 Query: 187 V 187 V Sbjct: 330 V 330 >gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC 13177] gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 325 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 324 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 115/187 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R +F P ALD++ R+++AG + ++ + +DP+ EF + ++ + Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + ++++ FF +++Q + GGNL+E +AN++R++R+R + KV+ Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E + SA ++ +LPF ++ ++YF +P Y+++L + G + A A M++GI+VMR Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317 Query: 181 LMINFDV 187 M+ V Sbjct: 318 RMVKIQV 324 >gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 321 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 109/182 (59%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R A F D FP+ L+ + RS+RAG S A+ + + SDP+ E RR E Q+LG L Sbjct: 140 RMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQNLGQPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++ + +P +V FF + + +Q + GGNL+E L L++++R+R ++A+++A+S + Sbjct: 200 EIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQ 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S I+ ++P V+ +++ +P Y I+DP GH L+ L+G +++R ++ F Sbjct: 260 GLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIRKIVTF 319 Query: 186 DV 187 DV Sbjct: 320 DV 321 >gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 330 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 270 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329 Query: 187 V 187 V Sbjct: 330 V 330 >gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K P +D++ R+++AG S A+ + +P EFR + + G+S+ Sbjct: 142 RKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVSV 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P+ ++ +F + +Q + GGNL+E L +S ++R R + K++ LS E Sbjct: 202 QDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAE 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+ LPF + ++ +PG++ VL DP G M++G A M+IGI VM +I Sbjct: 262 GRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIKI 321 Query: 186 DV 187 V Sbjct: 322 RV 323 >gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243] gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98] gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14] gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91] gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9] gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346] gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 322 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 106/173 (61%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 FP ALD++ R++RAG AV ++ + +DP+ +FR + + + G+ +++++ + Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ +VS+F + +Q + GGNL+E L +S I+R+R + +V+ LS E K SA I+ Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LPF V +V +P +M VL DP G ++G+A ML+GI+ MR +I V Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322 >gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210] gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894] gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112] gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215] gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b] gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 325 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 109/181 (60%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+SL Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L +++++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL DP G +L+GV A M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 322 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R + F P ALDI+ R ++AG PV+ A + + + P+ EF+ + G Sbjct: 140 ISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +PGY+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21] gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21] Length = 320 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RT +F + FP+AL I RS+RAG A+ ++ ++ PV FR E Q LGL + Sbjct: 139 ERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQLGLRM 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + P Y LIN+P G +L AAA ++G +V+R ++ Sbjct: 259 GRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIRKIVRI 318 Query: 186 DV 187 + Sbjct: 319 RI 320 >gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147] gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786] Length = 325 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 104/177 (58%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+A D+I R++RAG S A++++ G+ ++P+ EFR + + G+ L E++ Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ LS E K SA Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ LPF + L+ +P ++ VL DP G +L+GV M GI+ MR +I V Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325 >gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327] Length = 322 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 100/171 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F + P ALD + RS+RAG ++ A+ ++ + P+ EF+ V + G+ Sbjct: 142 KRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEISFGIPFK 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ R+ + +++FF + +Q + GGNL+E L L++ +R+R ++ KV+ LS E Sbjct: 202 EAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + SA ++GS+PF ++ ++ +P Y +VL + P+GH L+ V A M +G Sbjct: 262 RISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFF 312 >gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC 15444] Length = 316 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL R K P+AL I+ RS+ AG PV+ AV+++ + DP+ +EF + Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL+ ++ RM +V F+ + +Q + GGNL+E L + + +R+R+ M+ KV+ Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A S E + SA I+ S PF V T ++ P + +I++P +M IG +VM Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309 Query: 181 LMINFDV 187 MINF + Sbjct: 310 RMINFKM 316 >gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 325 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + +A+D+I R++RAG S A+ ++ + P+ EFR E + G++L Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+++ + +P+ ++ +F + +Q + GGNL+E L + ++R+R + K++ LS E Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SAW++G LPF + L+ +PG+M VL DP G ++G A M G++ MR +I Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS 2060] Length = 314 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M +L ++R A F + P L+I+VRS+RAG P+ A + Q DP SE + Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + R + +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R ++ +V+ Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA + PF ++ L+ +P Y + +P + L VA ++IG +V+ Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307 Query: 181 LMINFDV 187 ++NF + Sbjct: 308 RIVNFRI 314 >gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 110/182 (60%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF P ALD++ R+++AG S + ++ + DP+ EF + ++ + G+S+ Sbjct: 140 KQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEINFGVSV 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + + ++S+F + +Q + GGNL++ +A+++ ++R+R + +++ LS E Sbjct: 200 ADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+ ++P V+ + S Y+ L +D G +L+G+A M+ G++VMR MI Sbjct: 260 GRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMRKMIRI 319 Query: 186 DV 187 DV Sbjct: 320 DV 321 >gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 290 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 106/186 (56%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + K+R KF + P+AL ++ +RAGL +S A+A +V +S P+ EF ++ Q L Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G++L +++S + MP Q ++ + + ++ GG L+E L S +R R M+AK+ A Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K AW++G+LP + ++ P M++L + G L V A F +G+ V+R Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284 Query: 182 MINFDV 187 +I DV Sbjct: 285 IIAIDV 290 >gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii] gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii] Length = 313 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 104/177 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A F P+ALD++ RS+RAG + ++ + P+ +EFR V+E G+S++E Sbjct: 134 RRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVAFGVSVTE 193 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ R+ + ++FF T + +Q + GGNL+E L +SR+ R R + AKV+A+S E + Sbjct: 194 ALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGR 253 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SA I+ +LPF + L+ +P Y+ +L DP G ++ V MLIG +V + M+ Sbjct: 254 LSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTKRMVT 310 >gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 328 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + F A+DI R++RAG PV+ A++++ + +DP+ +EF V + G +L Sbjct: 147 EKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIAYGANL 206 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ + L+++ F+ +SVQS+ GGNL+E L NL+ ++RDR ++ KV+ALS E Sbjct: 207 NDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALSSE 266 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASAW++ LP +++ +P + + DP LIG++ +R M++ Sbjct: 267 GRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLRSMVDL 326 Query: 186 DV 187 V Sbjct: 327 KV 328 >gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 321 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+ + + P ALD++ RS+RAG + A V+ + +PV EF R E+Q LGL + Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199 Query: 67 ESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M P +++ F+ +Q + GGNL+E L +++ +R R +K+ AL+ E Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +AS I+G LP ++ ++ +P YM L++DP GHM++ AA L+G+ + + Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319 Query: 186 DV 187 D+ Sbjct: 320 DL 321 >gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca bermudensis HTCC2601] gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. HTCC2601] Length = 321 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+AV+ + DP+ +EF + + G + Sbjct: 140 KKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M + +Q++ F + +S+Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V ++ T P Y + +++ P + A F+ + +MVMR+++N Sbjct: 260 AQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 321 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R A F P AL++I R++RAG ++ ++ + P+ EF R E Q+LG+ L Sbjct: 140 NRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+I M +P ++ FF+T + +Q Q GG+L+E L + ++R+R + ++QAL+ E Sbjct: 200 EEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + +++ + Y L DP GH +L A LIG +V+R ++N Sbjct: 260 GRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1] Length = 324 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 99/177 (55%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F P ALD++ R++RAG A+ ++ + DP+ EFR + + + G+ ++ Sbjct: 148 RFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYGVPQQTAML 207 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + ++S+F + +Q GGNL+E L N+S+I+R R + +++ LS E K SA Sbjct: 208 NLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSA 267 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ +PG+M VL DP G + A M++G++ MR +I V Sbjct: 268 WILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKIIRIRV 324 >gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5] gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum AIU301] Length = 319 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 98/178 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R L+ FP+AL IVR VR G+PV +A+ V+ P EF R+ + +G L Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +M L E FF+T IS+Q++ GG L++ L L+ ++R R MKA+ AL+ EA Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA I+G +P + + P Y+ VL G+++L A + G +VMR +I Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315 >gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 322 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR P+ALD++ R++ AG A+ ++ + +P+ SEFR V + + G+ Sbjct: 141 QKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIPT 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE++ +++ +P +VS+F + +Q + GGNL+E L N+S ++R R + V+ LS E Sbjct: 201 SEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAWI+ LPF + ++ +P ++++L DP G ++ +A M+ GI VM +I Sbjct: 261 GRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIKI 320 Query: 186 DV 187 V Sbjct: 321 RV 322 >gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 324 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 106/183 (57%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++RT F D +AL +I S+R G ++ ++ + P+ +EF RV+ +LG++ Sbjct: 142 VERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMNLGVT 201 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E+++ + + + ++ T + +Q Q+GGNL+E L N++ +R R +K +++ L+ Sbjct: 202 TEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIKTLTA 261 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + S IIG LP + ++Y +PGYM +L P G L+ A LIG++++R ++N Sbjct: 262 QGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIRRIVN 321 Query: 185 FDV 187 DV Sbjct: 322 IDV 324 >gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str. Hildenborough] gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 321 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 108/181 (59%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+ Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4] Length = 321 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 108/181 (59%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A+F P+ALD++ R++RAG + + ++ + DP+ EF++V++ + G+ Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +VR + ++ FF +++Q + GGNL+E + ++R++R+R + +V+ LS E Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + ++ +P +M+VL P G++L+ + M IG + ++ M Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 320 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +P+ EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL RG M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 DV 187 D+ Sbjct: 319 DL 320 >gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2] gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2] Length = 319 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 103/179 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K +F+D FP+A+D + R +RAGLP++ AV I ++ P+ + F + + +G+ + Sbjct: 136 RKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELKIGVPI 195 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + L + FF+ +++Q GGNL L LS+I+R R+ ++ K +A + E Sbjct: 196 EQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAKAATGE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A+ +G +P S ++ PGY+ L DPRG ++L A + + + MR+++ Sbjct: 256 IRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMRMIMR 314 >gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379] gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379] Length = 321 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 1/173 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + F + P+AL +I RS+RAG ++ AV ++ ++ +P+ FR E Q LGL + Sbjct: 139 KKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQKLGLRI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ M++ M ++ FF TVI++ ++ GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 TDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + S +I+ +LP F L Y PGY +V + + +GH + A +IG + Sbjct: 259 GRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFL 311 >gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36] Length = 321 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I KR + FP ALDI+ R ++AG SD++ ++ + + EF+ + + G Sbjct: 139 INKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRINFGND 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ V+ +P F + +S+ + GGNL+E + NLSRI+R R K +V+ LS Sbjct: 199 VHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S W++ PF + ++Y +SP Y ++LIN P G LL ML+GI + +I Sbjct: 259 EGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWISKLIK 318 Query: 185 FDV 187 +V Sbjct: 319 IEV 321 >gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 324 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 107/187 (57%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + PV EF + + Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + A ML+G++ +R Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317 Query: 181 LMINFDV 187 ++ +V Sbjct: 318 KILRIEV 324 >gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + + G Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +PGY+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K] gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K] Length = 320 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR+AK + P ALD++ RS+RAG V+ A V+ + +PV EF R E Q LGL+L Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198 Query: 67 ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ +M P ++ F+ +Q + GGNL+E L + +R R K++AL+ E Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA I+G+LPF V+ + +P Y+ VL +G M++ A+ ++G++ + + Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318 Query: 186 DV 187 D+ Sbjct: 319 DL 320 >gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G Sbjct: 140 ISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +P Y+ L DPRG L+ + IG M +R +IN Sbjct: 260 ESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIRNIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 320 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 104/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ KF + FP+AL I RS+RAG A+ ++ + PV F+ E Q LGL + Sbjct: 139 ERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQLGLRM 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ RM + ++ FF+T++++ S +GGNLSE L L+ +R+R ++ +VQ + + Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + +P Y LI +P G +L AAA +IG +V+R ++ Sbjct: 259 GRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIRKIVRI 318 Query: 186 DV 187 + Sbjct: 319 RI 320 >gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 322 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 99/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + P+ EF+ + G Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +SR+LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + +PGY+ L DPRG L+ + G + +R +IN Sbjct: 260 ESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIRKIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 339 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 108/186 (58%), Gaps = 1/186 (0%) Query: 3 HLIKK-RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 H+ KK R KF P AL ++ RS++AG + ++ + +P+ EF + + + Sbjct: 154 HMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFNY 213 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL +S +++ + + + LQ++ FF T I++Q + GGNL E L ++ ++RDR + ++A Sbjct: 214 GLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKA 273 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E + S I+ LP ++ ++YF + YM +LI P G M++GVA L+G +++ Sbjct: 274 ITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIHK 333 Query: 182 MINFDV 187 ++N V Sbjct: 334 IVNIKV 339 >gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 321 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L +DPRG ++ + + IG + +R Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314 Query: 181 LMINFDV 187 +IN ++ Sbjct: 315 KIINIEI 321 >gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 321 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 105/174 (60%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R KF + FP+AL +I RS+RAG + A+ ++ + +DPV F+ E Q LGL Sbjct: 139 IRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQLLGLR 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++E+++ + + ++ FF+T I++ + +GGNLSE L NL++ +R+R ++ +V+ + Sbjct: 199 ITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVRVYTA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + + +++G+LP + +P Y +VL + +G +L A ++G+ V Sbjct: 259 QGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312 >gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 313 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 111/180 (61%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL ++R A+F P+AL ++ ++RAG + A+ V+ + P+ EF R + Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ R+ +P ++ T + +Q Q+GGNL+E L N++ +R+R +K +++ Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + SA IIG LP ++ ++ +P Y+ LI +P G ++LG+ AA ++G++++R Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306 >gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 321 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + ++ PGY++ L DPRG ++ + +G + MR +IN Sbjct: 259 ESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMRHIIN 318 Query: 185 FDV 187 F+V Sbjct: 319 FEV 321 >gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43] Length = 325 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 105/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P+ D I R++RAG S A++++ G+ ++P+ EFR + + G Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + KV+ L Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E K SA I+ LPF + L+ +P ++ VL DP G +L+G+ A M GI+ MR + Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320 Query: 183 INFDV 187 I V Sbjct: 321 IRIRV 325 >gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF + P+A+D+ R++RAG + + I ++SDPV+ EF++++E LG + Sbjct: 145 RRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALGSQVE 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + +PL ++ FF T + +Q Q G N+ L NLS ++R+R NM AK++A + + Sbjct: 205 PALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQ 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA ++ LP V + P Y+ +L DP G A +GI+V+R + N Sbjct: 265 RFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKIANIK 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218] Length = 321 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R +KF + P+ALDII R ++AG P++ + + + P+ EF+ + G Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S++LR R + K++ +S Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + PGY++ L DPRG L+ + +G + MR +IN Sbjct: 259 ESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMRHIIN 318 Query: 185 FDV 187 F+V Sbjct: 319 FEV 321 >gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus Ellin6076] Length = 323 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + FP +LD + RS+RAG S ++ ++ + +DP+ EFR + Q+LG L Sbjct: 143 KRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQNLGAPLD 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R +K +V+A S Sbjct: 203 TALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ LP + +PGY+ + +D G L+G A ++G ++ +IN Sbjct: 263 RLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIKRIINIK 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256] Length = 333 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 98/174 (56%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 FP ALDI VR +R+G P+ A+ ++ + DP+ +EF V + GL L E+++RM Sbjct: 160 QQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALARMA 219 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 L ++ F +SVQ + GGNL+E L NLS+++RDR +M KV+ALS E + +A I+ Sbjct: 220 ERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAVIL 279 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ T+P + + DP + G L+G +R MI+ V Sbjct: 280 TALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333 >gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 321 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A+F + P ALDII R+++AG P+ + + + DP+ +EF+ + Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + +P Y+ L NDPRG ++ V + IG + ++ Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314 Query: 181 LMINFDV 187 +I+ ++ Sbjct: 315 RIISIEI 321 >gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 321 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + R A+F + P ALDII R+++AG P+ + + + +P+ EF+ + G Sbjct: 139 VTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLNYGYD 198 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS Sbjct: 199 LRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSA 258 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L DPRG ++ + + IG + +R +IN Sbjct: 259 ESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIRKIIN 318 Query: 185 FDV 187 ++ Sbjct: 319 IEI 321 >gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 321 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 102/173 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +F P+ALD+I R+++AG + + ++ + +DP+ EF++ ++ + G+ Sbjct: 142 RMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEINFGIPADA 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + ++ FF +++Q + GGNL+E + N++R++R+R + +V+ LS E + Sbjct: 202 ALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGR 261 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +AWI+ LPF + ++ +P +M+ L P G+MLL + M IG + ++ Sbjct: 262 LTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314 >gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 322 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 102/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R A F + P ALDI+ R ++AG PV+ A + + DP+ +EF+ + G Sbjct: 140 ISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + FS+ + +Q + GGNLSE L +S++LR R ++ K++ LS Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L DPRG L+ + IG + +R +IN Sbjct: 260 ESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIRNIIN 319 Query: 185 FDV 187 F+V Sbjct: 320 FEV 322 >gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380] Length = 325 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 105/178 (58%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A+F D P ALD++ R++R+G ++ + ++ + P+ SEF ++ +LGL+ E+ Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + +P ++ FF+ + +Q + GGN++E L ++SR++R+R K +V+AL+ E + S Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A ++ LP + ++F + Y+++L +P G +L A ++G +++ ++ ++ Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIEL 325 >gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4] gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264] Length = 325 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 288 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 106/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ +KR F + F ALD++ R++ G P ++ + + + P+ EF + + Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ + +++ + + P V F++ + +Q + GGNL+E L NLS ++R R + KV+ Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SAWI+ +PF + ++Y ++P Y++ L RG LL + M++G++ +R Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281 Query: 181 LMINFDV 187 ++ +V Sbjct: 282 KILRIEV 288 >gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM 9799] Length = 324 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP ALDI+ R ++AG DA+ + + P+ EF+ + + G Sbjct: 144 KRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEINYGKDTR 203 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P FST + VQ + GGNL+E L NL+RI+R R + +V+ S + Sbjct: 204 RALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQG 263 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++ +P + +Y +SP Y L + G+ LL +A MLIGI + +I + Sbjct: 264 RMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWISRLIRIE 323 Query: 187 V 187 V Sbjct: 324 V 324 >gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH] Length = 325 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+A D+I R++RAG S A++++ G+ +DP+ EFR + + G+ L Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + K++ LS E Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K SA I+ LPF + L+ +P +++VL D G +L+G M GI+ MR +I Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 321 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F P+ALD+I R+++AG + ++ + +DPV EF+ ++ + G+S Sbjct: 141 RRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGVSPD 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ M R + ++ FF +++Q + GGNL+E ++ ++ +LR+R + +V+ LS E Sbjct: 201 AALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEG 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +AWI+ +LPF + +++ +P +M+ L P G+MLL + M G + ++ + Sbjct: 261 RLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLTTIR 320 Query: 187 V 187 V Sbjct: 321 V 321 >gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45] gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45] Length = 321 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 105/182 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+A++++VRS+R G P S A++V+ + DP+ +EF + + G + Sbjct: 140 RKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V ++ T P Y + +++ P + A F+ + ++VMR+++N Sbjct: 260 AQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12] Length = 322 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R A + P+A++++VRS+R G P S A+ ++ + +DP+ +EF + + G + Sbjct: 141 KQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ + M +Q++ F + +S+QSQ GGNL+E L L++++R R + +V+A++ E Sbjct: 201 TEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + PF + P Y + + P V A F+ I I+ M++M+N Sbjct: 261 AKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMKMMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 327 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+ Sbjct: 147 KRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P++++ FF + +Q + GGNL+E L ++ ++R+R + +V+ LS E Sbjct: 207 EALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWIIG LPF + + +P +++VL DP G ++ M+ G++ MR ++ Sbjct: 267 RLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRIVRIR 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 322 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESAYGRDVG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 327 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P A D+I R++RAG S A+ ++ + ++P EFR V + + G++L+ Sbjct: 147 KRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + +P+ ++ +F + +Q + GGNL+E L ++ ++R+R + +V+ LS E Sbjct: 207 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWIIG LPF + + +P +++VL DP G L+ M G++ MR ++ Sbjct: 267 RLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRIVRIR 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 325 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 105/181 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 321 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 100/180 (55%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R A+F + P ALDII R+++AG P+ + + + DP+ EF+ + G L Sbjct: 142 RMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLNYGYDLRL 201 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 +I +M +P + FS+ + +Q + GGNLSE L +S +LR R ++ K++ LS E++ Sbjct: 202 AILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESR 261 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 SAWI+ PF + + SP Y+ L DPRG ++ V + IG + ++ +I+ ++ Sbjct: 262 LSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIKKIISIEI 321 >gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591] gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591] Length = 325 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P+A+D I RS RAG+PV++ + S P+ +EFR + LG+ Sbjct: 143 LQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKLGVP 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR R+ + KVQ+ + Sbjct: 203 LRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQSKTS 262 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C+ + Y SP + L NDP G +L A + +G+++ LM+ Sbjct: 263 EARASAKIVAALFPGCLGYM-YLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHLMV 321 Query: 184 N 184 Sbjct: 322 K 322 >gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 327 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 1/181 (0%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF P+ALD++ R+++AG + ++ + DP+ EF +V+E + G+ + E Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206 Query: 68 SISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R+ ++ FF+ + +Q + GGNL+E L +++RI+R+R + ++ LS E Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA I+ ++PF V+ + +P Y+ VL DP G L + M +GI +M+ I Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326 Query: 187 V 187 V Sbjct: 327 V 327 >gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 323 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF + P ALDI+ R+++AG P + + V + DP+ EFR + G+++ Sbjct: 143 KRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMNIK 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + +++ +P + T + VQ GGNL+E L ++ ++R R + KV+ + E Sbjct: 203 TAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ +PF +S ++ +P Y+ +L+ +P G L+ +A +++G+ MR +I D Sbjct: 263 RLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIRID 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 323 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 106/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + +LG Sbjct: 142 QKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMNLGTQA 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + + ++ T + +Q Q+GGNL+E + N++ +R+R +K +++ L+ + Sbjct: 202 EEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++IG LPF ++T++ SP Y+ L N G +++G+A +IG+M ++ ++N Sbjct: 262 GRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIKKIVNI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 322 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P AL+II +RAG A+AV+ + P+ EF RV+ LG S+ Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M +++ T + +Q Q+GGN++E L + +R+R +K +++AL+ + Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SA II LP V+ L+ +P YM L+ +P G M+L +A ++GIM++R ++ + Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae WPP163] gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae WPP163] Length = 326 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G++V +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 321 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R +F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + FS+ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +S E++ SAWI+ PF + + F +P Y+ L D RG L+ + + G + +R Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +INF+V Sbjct: 315 NIINFEV 321 >gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] Length = 325 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + ++ VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 327 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 105/187 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KKR KF + ++L II S++AG A+ ++ + P+ E RV++ + Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + ++ T + +Q Q+GGNLSE L N+S +R+R +K ++Q Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + +++ SP YM L P G ++GV ++G ++++ Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320 Query: 181 LMINFDV 187 +I+ +V Sbjct: 321 KIIDIEV 327 >gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 322 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 103/186 (55%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKRTA+ + P+A++++VRS+R G P S A++++ + SDP+ +EF + + G L Sbjct: 141 KKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGREL 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L LS+++R R + +V+A++ E Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181 AK S + P + P Y ++ H AA F+++ ++VMR Sbjct: 261 AKWSGNFLSGFPLMALIGIQLIDPNYY----DEAMEHAFFIPAAITVGVFLVLNLIVMRG 316 Query: 182 MINFDV 187 ++N V Sbjct: 317 LVNIKV 322 >gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 321 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 LS E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314 Query: 181 LMINFDV 187 +I+F+V Sbjct: 315 KIISFEV 321 >gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 232 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 100/183 (54%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++F + P+ALDII R ++AG PV+ A + + + P+ EF+ + G Sbjct: 50 IADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLNYGYD 109 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + +I +M P + F++ + +Q + GGNLSE L + ++LR R + K++ LS Sbjct: 110 MRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSA 169 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E++ SAWI+ PF + + F +P Y+ L D RG ++ V + G + +R +I+ Sbjct: 170 ESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIRKIIS 229 Query: 185 FDV 187 F+V Sbjct: 230 FEV 232 >gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47] Length = 321 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L Sbjct: 140 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E Sbjct: 200 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I Sbjct: 260 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11] gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11] Length = 322 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 103/182 (56%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G + Sbjct: 142 KRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESAYGRDVG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC+ ++ PGY + +I+ P V A + + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 325 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + +P+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1] gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1] Length = 347 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F + P AL+++ RS+RAG ++ ++ + P+ +EFRR E Q G+ L Sbjct: 166 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 225 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ESI M +P ++ FF+T + +Q Q GG+LSE L + ++R+R + +QAL+ E Sbjct: 226 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 285 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ +LP + ++ + Y+ +L D G M LG+A ++G + ++ +I Sbjct: 286 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 345 Query: 186 DV 187 V Sbjct: 346 KV 347 >gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 323 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 91/147 (61%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F D P LD+I S+R G + ++A + G +P+R+E RRV + LGLS+ Sbjct: 142 QRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQLGLSI 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ Sbjct: 202 TQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSM 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152 + S+++IG+LPF ++ +++ +P YM Sbjct: 262 QRISSYVIGALPFALALIIFTINPTYM 288 >gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 311 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 100/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF +AL I+ S+RAG A+A I DP+ EF +V LG ++ Sbjct: 130 KQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVELGENI 189 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S++ + M +E+ +T +S+Q Q+GGNL++ L N+ +R+R ++ ++AL+ + Sbjct: 190 EKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIKALTAQ 249 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 SA +I LP V L+ + YM + P G+ LLGV+A ++G +++ + N Sbjct: 250 GDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIKKITNI 309 Query: 186 DV 187 ++ Sbjct: 310 EM 311 >gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex HEL-45] Length = 320 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 102/185 (55%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H KR + + P+A++++VRS+R G P S+A++++ + DP+ SEF + + G Sbjct: 136 HKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAAYG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A+ Sbjct: 196 RDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAI 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EAK S + P ++ P Y + + + P + F+++ + VMR++ Sbjct: 256 TAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMRIL 315 Query: 183 INFDV 187 N V Sbjct: 316 TNIKV 320 >gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 321 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR +F P+A++++ R++R+G ++ + ++ + P+ FR ETQ+LG+ + Sbjct: 140 KKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQNLGVPV 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ ++ MP + FF T +++Q Q GG+L+E L +S ++R+R + VQAL+ E Sbjct: 200 ESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S ++ ++P + VY+ +P Y+ VL G ++ V ++G + ++ +I+ Sbjct: 260 GRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIKKIIDI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5] gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 100/180 (55%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + ++ P LD VRS+++G ++DAV + S+DP++S R+ LG+ Sbjct: 111 LYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLGV 170 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +L +++S + E+ F+ + V + GGN SE L NL +++R+R+ ++ A++ Sbjct: 171 NLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAMT 230 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E + +AW++G+LP + T+PGYM + +D G +L A + G + + M+ Sbjct: 231 GETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRML 290 >gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 326 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 326 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1] gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens Pf0-1] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 98/178 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + ++ P LD VRS+++G ++DAV + S DP++ RV LG+SL Sbjct: 113 QRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLGVSL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + E+ F+ + V + GGN SE L NL R++R+R +++A++ E Sbjct: 173 PEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +AW++G LP ++ ++P Y+ + ND G M+L A +IG +++ M+ Sbjct: 233 TRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRML 290 >gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum SCRI1043] Length = 326 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LRDR+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAMLFPGCLAYL-YMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 326 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + P A+D I RS RAG+PV++ +++ + P+ +EF+ + LG+ Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L + I +P+ E FF ++ + + GG L E L LS LR+R+ ++ KVQ+ + Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263 Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA I+ +L P C++ L Y SP + L +DP G +L A + +G+++ +M+ Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHVMV 322 Query: 184 N 184 Sbjct: 323 K 323 >gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + + ++ + S+P+ EFR + + G+SL Sbjct: 145 RRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + A+ ++ + SDP+ EFR + + G+SL Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P++++ +F + +Q + GGNL+E L +++ ++R+R + K++ LS E Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++G LPF + + +P ++ VL D G ++ M G++ MR +I Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] Length = 325 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 96/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR DFP+ LD+I R+++AG +DA+ + + P+ EF+ + + + Sbjct: 145 KRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +P Y+ L GH LL A M IG + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWISRIIKID 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 316 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F + P+A+ ++ RS+RAG ++ AV +I + +P+ F+ E Q LG+ + Sbjct: 135 KKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQKLGVRI 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ + + Q+ +FF TV + S+ GGNLSE L L+ LR R ++ +V+ ++ E Sbjct: 195 ADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAE 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +++ +LP + +Y PGY++V ++LG A ++G ++R ++N Sbjct: 255 GRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIRKIVNI 314 Query: 186 DV 187 + Sbjct: 315 SI 316 >gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 325 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 102/181 (56%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K P+ D+I R++R+G + + ++ + DP+ EFR + + G+SL Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P+Q++ +F + +Q + GGNL+E L +S ++R+R + KV+ LS E Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF + ++ + +++VL DP G ++G ML G+ +R ++ Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49] Length = 325 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 101/177 (57%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL +++ Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P+Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E + SA Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+G LPF + L+ + +++VL DP G + G M+ G+ MR +I V Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325 >gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040] Length = 322 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 141 KKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P V + P Y + +I+ P + + I VMR + N Sbjct: 261 AQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMRKLTNI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 323 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 99/176 (56%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F+ P LD++ RS++AG + + + + DP+ EF ++ + G+ + +++ + Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 M + +++FF + +Q + GGNL+E + +++ ++R+R KV+AL+ E S W Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++ LPF + ++ F +P Y+ +L + GH+++ A M+IG MR ++ DV Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323 >gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512] Length = 317 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L Sbjct: 137 RRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + + G L+ A M IG +++ M+NF+ Sbjct: 257 RITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKMVNFE 316 >gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas entomophila L48] gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas entomophila L48] Length = 292 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 99/178 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ + ++ P LD VRS++AG +SDAV V + +P+RS RV LG+ L Sbjct: 112 RRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQLGVPL 171 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++S + E+ F+ + + + GGN SE + NL +++R+ + +++A++ E Sbjct: 172 DDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLRAMTGE 231 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +AWI+G+LP + F +PGY+ + D G M+L A A +G +V+ M+ Sbjct: 232 TRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLWRMM 289 >gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 333 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 4/189 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178 ALS E + +A ++ +LP ++ +P + + D ++G LIG Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDS--MFIIGFVGLIVLYLIGFFT 324 Query: 179 MRLMINFDV 187 +R M++ V Sbjct: 325 IRRMVDLKV 333 >gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42] Length = 317 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A+A++ + DP+ +EF + + G++L Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LR R +KAKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + L + G ++ V M IG +++ M+NF+ Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKMVNFE 316 >gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 319 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 2/187 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +R A P AL+IIVRS+ AG PV A+A++ + SDPV +EF + Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +L ++I RM +V F+ + +Q + GGNL+ L + +R+R M+ K++A Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMVMR 180 S E +ASA I+ + PF ++ SP + +I++P LLG+ ++ IG +VMR Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGL-TVWVGIGNLVMR 312 Query: 181 LMINFDV 187 MI+ + Sbjct: 313 RMIDMKL 319 >gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619] gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619] Length = 293 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 102/183 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R + ++ P LD VRS++AG ++DAV + S +P+RS RV Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++ Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + +A I+G+LP C+ +P Y+ + D G M+L +A A ++G +V+ Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287 Query: 181 LMI 183 M+ Sbjct: 288 RMM 290 >gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 327 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 103/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR P A D+I R++RAG S A+ ++ + ++P+ EFR V + + G++L Sbjct: 146 RKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYGVTL 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ + +P+ ++ +F + +Q + GGNL+E L +++ ++R R + KV+ LS E Sbjct: 206 NEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVLSAE 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+ LPF + + +P + +VL DP G ++ M++GI+ MR ++ Sbjct: 266 GRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRIVQI 325 Query: 186 DV 187 V Sbjct: 326 RV 327 >gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 336 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 107/182 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + P A+D++ ++ AG ++ A+ + + S+P+ E +V+ Q LGLS Sbjct: 155 KRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGLSQ 214 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ RM+ P +++ T I++Q ++GG+L+ L ++S +R+R +K +++ L+ + Sbjct: 215 EEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQ 274 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA+I+ ++PF ++ +++ + Y+ L G ++L VA A +++G +MR +I Sbjct: 275 GRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRIIAI 334 Query: 186 DV 187 V Sbjct: 335 KV 336 >gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 333 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 89/151 (58%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R K + FP ALD VR +RAG P++ A+ ++ + DP+ SEF V++ Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +++ RM + E+ F +SVQS+ GGNL+E L NLS ++R+R ++ KV+ Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151 ALS E + +A ++ +LP ++ +P + Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAF 297 >gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea MMB-1] gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea MMB-1] Length = 327 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 98/182 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR V+AG+P ++A +I P+ E + + L Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLSL +++ +PL E FF+ ++ + + GG LS+ L LS LR+R+ + K++A Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ L +YF SP L++DP G+ +L A +L G+ + Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320 Query: 182 MI 183 MI Sbjct: 321 MI 322 >gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium HTCC2083] gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium HTCC2083] Length = 322 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 103/187 (55%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR + + P+A++++VRS+R G P S AV ++ + DP+ SE + + Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + Q++ F + +++Q Q GGNL+E LA L++++R R + +V+ Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S + S P + P Y + +++ + AAF+ + ++VMR Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315 Query: 181 LMINFDV 187 +++N V Sbjct: 316 ILVNIKV 322 >gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246] Length = 319 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 102/180 (56%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R F P+A++++ R++RAG ++ + V+ + P+ EF RV E Q+LG+ L E Sbjct: 140 RLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQNLGIPLEE 199 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M +P ++ FF T +++Q Q GG+L+E L + I+R+R + +V+AL+ E + Sbjct: 200 ALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGR 259 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 S ++ +LP + ++ +T P Y+ +L D G + A MLIG ++ +++ V Sbjct: 260 LSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIKKIVDIKV 319 >gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 325 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315 >gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158] Length = 325 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 101/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K P+ D+I R++R+G + + ++ + DP+ EFR + + G+ L+ Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P Q++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+G LPF ++ + +++VL DP G ++G M G++ +R ++ Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324 Query: 187 V 187 V Sbjct: 325 V 325 >gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1] gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1] Length = 329 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 98/183 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++ + K +F + P A+D IVR RAG+PVS+A ++ P+ EF V + L Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ + +PL E FF ++ + + GG LS+ L L+ LR+R+ + K++A Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 + E +ASA I+ SL +Y SP L+ND G+ +L A +L+G+ + Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322 Query: 182 MIN 184 MI Sbjct: 323 MIK 325 >gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 322 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S AVA++ + DP+ +E + + G + Sbjct: 141 KKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ +M M +Q++ F + +++Q+ GGNL+E L LS+++R R + +V+A++ E Sbjct: 201 GESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P ++ P Y + + V AAF+++ ++VMR ++N Sbjct: 261 AKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVNI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2150] Length = 323 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P+A++++VRS++ G P S A+A + +S DP+ +EF + + G + Sbjct: 142 KKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGEI 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S+ M + +Q++ F + V+ +Q++ GGNL+E L L+ ++R R + KV A++ E Sbjct: 202 TDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAE 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + + P + T P + + ++ + V A ++I I+ MR+M N Sbjct: 262 AKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTNI 321 Query: 186 DV 187 V Sbjct: 322 KV 323 >gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 323 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 104/181 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P+AL+++ R++R+G +S ++V+V + P+ +EF E Q+LG+ + Sbjct: 143 RRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQNLGIPIG 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M+ MP ++ FF T + +Q Q GG+L+E L + I+R R + +VQAL+ E Sbjct: 203 EALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S ++ +LP + VY+ +P Y+ +L D G ++ ++G + ++ ++N Sbjct: 263 RISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIKKIVNIK 322 Query: 187 V 187 + Sbjct: 323 I 323 >gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 319 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 102/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ KR KF D +AL I+ S+RAG A+ + + P+ +EF R ++ Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG E+++ M + ++ T +++Q Q+GGNL+E L N+ + +R MK +++ Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+ LP + ++ +P Y+ +L P G +L+G A LIGIM+++ Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312 Query: 181 LMINFDV 187 +IN ++ Sbjct: 313 KVINIEL 319 >gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 105/180 (58%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L Sbjct: 137 RRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+A+S E Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + G +++ V A M IG +++ M+NF+ Sbjct: 257 RITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKMVNFE 316 >gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01] Length = 322 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LSRILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179 +S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + + Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMIS-LFIGTLWI 314 Query: 180 RLMINFDV 187 R ++N +V Sbjct: 315 RKIVNIEV 322 >gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 335 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 104/176 (59%), Gaps = 4/176 (2%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F D P LD+I S+R G + ++A + +P R+E RRV + LGLS+++++ Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 +V+ M ++ T I + +++GGNL + L N+S +R+R ++ +V+ ++ + S+ Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMIN 184 ++IG+LPF ++ +++ +P YM L G +L AF+ ++G +++R +++ Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQP--GLILCIPIGAFISSVVGFLIIRKIVD 332 >gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 325 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + DP+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++G M +G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLL 315 >gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum WSM2075] Length = 321 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 104/180 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R +F P AL++I R ++AG PV A+A++ + DP+ +EF + + G L Sbjct: 140 KRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDL 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E Sbjct: 200 VSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SA+I+ ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 260 GRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 319 >gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 310 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 95/182 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR A+F + L ++ +RAG + A+ +S P E RRVI LG Sbjct: 127 LAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETSLGR 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L S++ M ++ + + I + ++GGNL+E L ++ +R+R +K ++AL+ Sbjct: 187 DLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALA 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA+I+ ++P + ++ +PGYM+ + P G ++ + FM IG + MR +I Sbjct: 247 AEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMRKII 306 Query: 184 NF 185 + Sbjct: 307 DL 308 >gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera pallida ATCC 43644] gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC 43644] Length = 331 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ KKR F P AL++ R++RAG + + ++ + + P+ EF RV E Q+ Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + E++ M +P +V FF T + +Q Q GG+L E L +S ++R R +K +V Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMVM 179 AL+ E + S ++ ++P + ++ T+ Y+ L DP G +L AA ++G + + Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323 Query: 180 RLMINFDV 187 R +++ V Sbjct: 324 RKIVDIKV 331 >gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 322 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K S + P + P Y N + + V F+++ ++VMR ++N Sbjct: 262 KWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMRALVNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 325 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+H +R K P+ D+I R++R+G S A+ ++ + +P+ EFR + + Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+SL +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 LS E + SAWI+G LPF + ++ + +++VL DP G ++GV M G++ Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315 >gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4] Length = 283 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 100/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L K+R KF+ P+AL++I S+++G VS+A+ + + P++ EF+ + Q L Sbjct: 98 QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P +E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771] Length = 317 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 103/180 (57%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYGVTLD 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + ++++ + +SVQ+ GGNL E L NLS+ LRDR ++AKV+A+S E Sbjct: 197 DALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A + PF + ++ SP Y + + + G ++ A M +G +++ M+NF+ Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKMVNFE 316 >gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54] gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54] Length = 317 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 99/181 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F + FP+ALD++ +++AG + ++ ++ + P+ EF V+E + G S+ Sbjct: 136 RQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKSI 195 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + E+ +F T + VQ + GGNL E L +S I+R + + +V+ALS E Sbjct: 196 DSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K SA I+ +LPFC++ V + Y+ +LI DP G L+ A M G ++ + Sbjct: 256 GKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQL 315 Query: 186 D 186 D Sbjct: 316 D 316 >gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides 2.4.1] gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 322 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ +I R KF + P ALDII R ++AG P++ A + + S P+ EF + Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G L +I +M P + FS+ + +Q + GGNL E + LS+ILR R + K++ Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179 +S E++ SAW++ PF + ++ P Y+ +L P G M++G + + IG + + Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVS-LFIGTIWI 314 Query: 180 RLMINFDV 187 R ++N +V Sbjct: 315 RKIVNIEV 322 >gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P ++ P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 322 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E I M Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P + P Y + + P V AF++ ++ M++M+N Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 310 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 95/185 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR A F + L ++ +RAG + A+ +S P E RRVI Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +++ M ++ + S I + ++GGNL++ L +R+R +K ++ Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+I+ ++PF + ++ SP YMN + + P G ++GV+ M IG + MR Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303 Query: 181 LMINF 185 +I+ Sbjct: 304 KIIDL 308 >gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 325 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDAV ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NLSR++R R + +V+ LS E Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L GH LL A M +G + + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio parahaemolyticus 10329] Length = 322 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 95/161 (59%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P+AL+++ R++R+G ++ + V+V + DP+ EF E Q+LG+ + +++ + Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P + FF+T +++Q Q GG+L+E L + I+R+R + +VQAL+ E + S ++ Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +LP + ++Y+ +P YM +L + G ++ A ++G Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311 >gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 322 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 99/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P + A+A++ + +DP+ +EF + + G + Sbjct: 141 KKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +ES+ M Q++ F S +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 TESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + + P ++ P Y + + V F+ I ++ M++M+N Sbjct: 261 AKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp. Ex25] gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25] Length = 322 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ A + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24] gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24] Length = 316 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 97/180 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L ++R A+F + L ++ +RAG V A+ + ++S+P +EF RV+ Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG L +S++ + M ++ ++ + I + ++GG+L+E + +R+R +K V+ Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA I+ +LP + L+ +P Y L P G M+LG+A M IG + +R Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309 >gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis 3_1_45B] Length = 292 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 8/175 (4%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIE---TQHLGLSLSE 67 FL FP A+D RS++AG+PV A+ I+G++ D EF RRV++ +GL E Sbjct: 116 FLSRFPEAVDNFTRSIQAGIPVDRALK-ILGEAYD---DEFGRRVLKLCREMKVGLPFRE 171 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + +V FF V+++ + G LS LA+LS +LR+R+ + K++AL+ E++ Sbjct: 172 ALGNFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESR 231 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 ASA ++ LP + L F +P + L+NDP G ++ G A A ML G ++++ M Sbjct: 232 ASARVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRM 286 >gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 105/182 (57%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RT F++ + + ++ S+RAG + + ++ ++ P+ EFRRV+ LG+ Sbjct: 146 RRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGIPT 205 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++S ++R +P +++ T I+VQ ++GGNL++ L + +R+R +K +++ L+ + Sbjct: 206 QEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLTAQ 265 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S +II +LP ++ L+ +PGY+ ++ P M +G + +G + MR ++N Sbjct: 266 QSISGYIISALPVGLALLLMVINPGYVMGMMRWPWICMPIG-GVVLIFLGFIAMRKIVNI 324 Query: 186 DV 187 +V Sbjct: 325 EV 326 >gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234] Length = 317 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 104/179 (58%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF + P ALD+ RS+ AG P+ A++++ + DP+ +EF + + G++L + Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + +++++ + +SVQ+ GGNL E L NLS+ LRDR +KAKV+++S E + Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A + PF + ++ +P Y + + + G +++ M IG +++ M+NF+ Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316 >gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 99/182 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L Sbjct: 220 RQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVNIPL 279 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ + Sbjct: 280 EDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 339 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+GSLP + L+ +P Y+ L+ P G MLLG + G++V+R +I Sbjct: 340 GRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRALIRV 399 Query: 186 DV 187 D+ Sbjct: 400 DI 401 >gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 322 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 105/188 (55%), Gaps = 12/188 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P++++++VRS+R G P+ A+ ++ +S DP+ +EF + + G + Sbjct: 141 KKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAAYGREV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------VM 179 A+ S + + P + P Y + +++ H L + A F ++G+M VM Sbjct: 261 AQWSGKFLSAFPLGALLFILVKDPNYYDGVMD----HELF-IPACF-VVGVMLTMNLFVM 314 Query: 180 RLMINFDV 187 R++ N V Sbjct: 315 RMLTNIKV 322 >gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 95/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR AK + P+ ++++VRS+R G P S AV ++ + DP+ +EF + + G + Sbjct: 141 KKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECSYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P P Y + +++ P + + I VMR + + Sbjct: 261 AQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMRKLTDI 320 Query: 186 DV 187 V Sbjct: 321 QV 322 >gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 2/188 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + E++ M + +Q++ F + + +Q Q GGNL+E LA L++++R R + +V Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255 Query: 121 ALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A++ EAK S + P FC+ + P Y + +++ P + + ++VM Sbjct: 256 AITAEAKWSGKFLSGFPVFCL-VFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVM 314 Query: 180 RLMINFDV 187 R++ N V Sbjct: 315 RILTNIKV 322 >gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 322 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P ++ ++ + DP+ +EF + + G + Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +S+Q Q GGNL++ LA L++++R R + +V A++ E Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---GHMLLGVAAAFML-IGIMVMRL 181 AK S + P + P Y + ++++P +G FML + ++VMR+ Sbjct: 261 AKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVG----FMLTLNLIVMRI 316 Query: 182 MINFDV 187 + N V Sbjct: 317 LTNIKV 322 >gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62] gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62] Length = 322 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A + P+A++++VRS+R G P + AVA++ + DP+ SE + + G + Sbjct: 141 KKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P ++ P Y + + V A F++ + VMR+++N Sbjct: 261 AKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMRMLVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR] gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR] Length = 320 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR A+F +AL I+ S+RAG A+ ++ + P+ EF R + +LG + Sbjct: 139 QKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMNLGTAT 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + + +++ T + +Q Q+GGNLS+ L +S +R+R +K +++ L+ + Sbjct: 199 EEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S I+G+LP + ++ +PGY+ +L +D G +L+ LIG+ +++ +++ Sbjct: 259 GRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIKKIVDI 318 Query: 186 DV 187 V Sbjct: 319 KV 320 >gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 321 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 99/171 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ SEF + + G L +++ + Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+Q+ GGNL E L L+ +R+R ++ KV+A++ E + SA+I+ Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++P + + PG+ + + +P+ LLG + ++++G ++M M NF Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNF 319 >gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3] Length = 325 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR FP+ALD++ R+++AG SDA+ + + P+ EF+ + + + Sbjct: 145 KRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANINYTKDVK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + +LSR++R+R + +V+ LS E Sbjct: 205 RALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +P Y+ L G LL A M IG + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWISKIIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 101/182 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ SEF + + G + Sbjct: 141 KKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + + LQ++ F + +++Q Q GGNL+E LA L+ ++R R + +V+A++ E Sbjct: 201 GEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + + P + P Y + +++ P A F+ + ++VMR +++ Sbjct: 261 AQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMRKLVDI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 96/180 (53%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R AK + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + E Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ M + +Q++ F S +++Q Q GGNL+E LA L+ ++R R + KV+A++ EAK Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 S + + P + P Y + +++ P + + ++VMR++ + V Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322 >gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio alginolyticus 40B] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 2/184 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R KF + P ALDII R ++AG P++ + + S P+ EF + G Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLNYGYD 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +I +M P + FS+ + +Q + GGNL E + LS ILR R + K++ +S Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183 E++ SAW++ PF + ++ P Y+ +L P G M++G A + IG + +R ++ Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318 Query: 184 NFDV 187 N +V Sbjct: 319 NIEV 322 >gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I] gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I] Length = 322 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 100/182 (54%), Gaps = 2/182 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + AV ++ + DP+ +EF + + G + Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S + P FC++ ++ P Y + +++ P + + VMR++ N Sbjct: 262 QWSGKFLSGFPLFCLAGILV-KDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMRMLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 309 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 100/175 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R +F P LD++ +RAG ++ Q P+ ++V+ LGL L Sbjct: 128 QRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISLGLDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + ++R V + ++ T I +Q ++GGNL++ L N++R++RDR+++ A+++AL+ + Sbjct: 188 EDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKALTSQ 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + I+ LP ++ ++ SPGY++ L + +G ++LG A F IGI+V++ Sbjct: 248 GRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQ 302 >gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica KT99] Length = 325 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 8/185 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR----RVIETQHLG 62 KR FP+ LD+I R+++AG +DA+ + + P+ EF+ + T+ + Sbjct: 145 KRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+L I R+ P F++ + VQ + GGNL+E + NL+R++R R + +V+ L Sbjct: 205 LALLGFIQRV----PSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + SAWI+ LPF + ++Y +P Y+ L G LL M+IG + + Sbjct: 261 SAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWISRI 320 Query: 183 INFDV 187 I DV Sbjct: 321 IKIDV 325 >gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 325 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 98/172 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R K P+ D+I R++R+G + A+ ++ + +P+ EFR + + G+SL Sbjct: 144 RRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVSL 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P ++ +F + +Q + GGNL+E L +++ ++R+R + KV+ LS E Sbjct: 204 HDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAE 263 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 + SAWI+G LPF + ++ + +++VL DP G ++G M G++ Sbjct: 264 GRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLL 315 >gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 321 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P + A+ ++ + DP+ +EF + + G + Sbjct: 140 KKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRDI 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ E Sbjct: 200 GEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P + P Y + +++ P + + + ++VMR ++N Sbjct: 260 AQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVNI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp. AzwK-3b] Length = 322 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 97/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + A++++ + +DP+ +EF + + G + Sbjct: 142 KRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E L L++++R R + +V+A++ EA Sbjct: 202 EALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 K S + P + P Y + + P + F++ + VMR ++N Sbjct: 262 KWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 325 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 145 KRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 325 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 98/181 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR K + FP+ALD++ R+++AG SDA+ ++ + P+ EF + + Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANINYSKDTK 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + +P F++ + VQ + GGNL+E + NL+R++R R + +V+ LS E Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAWI+ LPF + ++Y +PGY+ L G+ LL A M +G M + +I D Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324 Query: 187 V 187 + Sbjct: 325 M 325 >gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 320 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 101/181 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R F + + II S++AG A+AV+ ++SDP EF+++++ LG+S Sbjct: 139 KDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMSLGISE 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ + +++ VI +Q +GGNLSE L N+S +R+R+ +K++++ L+ + Sbjct: 199 EDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELKTLTAQ 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S I+ +P + +Y + Y+ +L G +++ A +G++++R +IN Sbjct: 259 GRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIRKIINI 318 Query: 186 D 186 D Sbjct: 319 D 319 >gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 301 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 99/171 (57%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P AL++I R ++AG PV A+A++ + DP+ +EF + + G L +++ + Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNSLFD 188 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + +++ F T +S+QS GGNL E L L+ +R+R ++ KV+A+S E + SA+I+ Sbjct: 189 RVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAYILT 248 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 ++P + + PG+ + ++P+ L+G + ++++G ++M M NF Sbjct: 249 AIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 299 >gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 320 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 86/148 (58%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P ++A+A++ + DP+ SEF + + G + Sbjct: 139 KKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRDI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V A++ E Sbjct: 199 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153 AK S + + P ++ P Y + Sbjct: 259 AKWSGKFLSAFPIVALIVIKLGDPHYYD 286 >gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 320 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 102/184 (55%), Gaps = 4/184 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P+A++++VRS+R G P + A++++ + DP+ SEF + + G + Sbjct: 139 KKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRDI 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ E Sbjct: 199 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183 AK S + + P ++ P Y + ++ P + G A F+ + ++VMR + Sbjct: 259 AKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHP--LFIPGCIAVVLFLSLNLIVMRKLT 316 Query: 184 NFDV 187 + V Sbjct: 317 DIKV 320 >gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola granulosus HTCC2516] Length = 322 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 96/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P S A+ ++ + +DP+ +E + + G + Sbjct: 141 KKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAAYGRDM 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S + P + P Y + ++ V AF+++ + VMR + N Sbjct: 261 AKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMRHLTNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035] gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035] Length = 322 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 85/153 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S A+ ++ + DP+ +EF + + G + Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F + +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 K S + + P + P Y + + P Sbjct: 262 KWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHP 294 >gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 319 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R D P D++ R++ +G +S A ++ Q P+ EF+ + Q+LGL Sbjct: 142 QRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLGLPYE 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R + E+ F+ + VQ Q GG+ S+ L NL+ +R+R + KV+A++ E Sbjct: 202 ITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAITSEG 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A AW++ +LPF +Y Y +VL+ P ++ V+ A +GI +R ++ + Sbjct: 262 RAQAWVLSALPFVSFGGIYLLDRDYASVLLERPNVMAIMAVSIA---LGIAWIRQIVCIE 318 >gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY] gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY] Length = 279 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 104/185 (56%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++R AK ++ P+AL+++ S+R+G ++ A+ ++ ++ P E V+ Q LG Sbjct: 95 YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +SL ++ + + L++V+ + I++ +GGNLSE L L+ LR + M+ K++AL Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++G LP + +++ P M L + G ++ V A +++G + ++ + Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274 Query: 183 INFDV 187 + DV Sbjct: 275 VTIDV 279 >gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 283 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K L K+R KF+ P+AL++I S+++G VS A+ + + P++ EF+ Q L Sbjct: 98 KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ M + +P E + + + ++GGNL+E L LS LR + M+ K+ A Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++Y P M ++ +P G L+ + + G + +R Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277 Query: 182 MINFDV 187 ++ DV Sbjct: 278 IVAIDV 283 >gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614] Length = 326 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 100/181 (55%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F P L ++ S+ AGL ++ + + + +DPV +EFRR + LG+ L Sbjct: 146 RRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETRLGVPLE 205 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + ++++ I +Q Q+GGNL+E L ++ +R+R+ ++ +V ALS E Sbjct: 206 DALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEG 265 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + SAW++GSLP T + + Y+ L DPRG +LL AA ++ +G M ++ + Sbjct: 266 RLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMSRLVRVE 325 Query: 187 V 187 V Sbjct: 326 V 326 >gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 323 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 102/182 (56%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR AKF +AL I+ S+R+G A+ ++ + +P+ EF R + LG Sbjct: 142 QKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMSLGTPT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + + ++ T + +Q Q+GGNL+E L N++ +R+R +K ++++++ + Sbjct: 202 EEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIRSITAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S +IG LPF ++ L+ SP Y+ L N G +++ A +IG++ ++ +++ Sbjct: 262 GRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIKKIVDI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia cinnamea P4] Length = 314 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 88/162 (54%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D ++L ++ S+RAG + A+A + ++ P EF R+I +G L+ ++ Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 M Q+ + + I++ ++GGNL+E L + +R+R ++ +VQAL+ E K SA+++ Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +LPF + ++ ++P Y+ VL P G ++ + IG Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIG 302 >gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein [Roseobacter sp. MED193] Length = 322 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P + V ++ + DP+ +EF + + G + Sbjct: 142 KRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECAYGRDIG 201 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + +Q++ F S +++Q Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 202 EALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S + + P P Y + +++ P + + + VMR++ N Sbjct: 262 QWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMRVLTNIK 321 Query: 187 V 187 V Sbjct: 322 V 322 >gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 322 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F + P+A++++VRS+R G P S A+ ++ + DP+ SE + + G + Sbjct: 141 KKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRDI 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ M M +Q++ F + +++Q GGNL+E L L++++R R + +V+A++ E Sbjct: 201 GDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVMRL 181 AK S + P ++ P Y + + P + LG F++ VM+ Sbjct: 261 AKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLG----FLIANYFVMKA 316 Query: 182 MINFDV 187 + N V Sbjct: 317 LTNIKV 322 >gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 310 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 93/182 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR A F + L ++ +RAG + A+ +S P E RRVI LG Sbjct: 127 LAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLGR 186 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ M ++ + S I + ++GGNL++ L ++ +R+R +K ++AL+ Sbjct: 187 DLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKALA 246 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E K SA+I+ ++PF + ++ SP YMN + P G ++ + M +G + MR +I Sbjct: 247 AEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKII 306 Query: 184 NF 185 + Sbjct: 307 DL 308 >gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 332 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 103/191 (53%), Gaps = 8/191 (4%) Query: 5 IKKRTAKFLDDFPNAL-DIIV---RSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K R A+ + F N L D+I ++R G + ++ ++ DP +EFRRV++ Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S E++ ++R +P ++ T +S+Q ++GGNL++ L + +R+R +K ++ Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176 L+ + + S+WII LP ++ + +P YM L P+ + V + FM+ +G Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321 Query: 177 MVMRLMINFDV 187 ++ +I+ +V Sbjct: 322 FAIQKIIDIEV 332 >gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain [Thermomicrobium roseum DSM 5159] Length = 323 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 104/182 (57%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R +F++ + + ++ S+RAG + + ++ +S+ P+ EFRRV+ LG+ L Sbjct: 143 RHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLGVPL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ ++ +P +++ T I++ ++GGNL++ L + +R+R +K +++ L+ + Sbjct: 203 QDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQ 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 S +II LP ++ L++ +P Y+ L+ P M +G A M++G +VMR ++ Sbjct: 263 QSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPWICMPIG-AVICMVLGFVVMRRIVAI 321 Query: 186 DV 187 +V Sbjct: 322 EV 323 >gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25] gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 294 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 96/178 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + ++ P LD VRS+++G ++DAV V +P+R RV +G+SL Sbjct: 114 QQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMGVSL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+S + E F+ + V + GGN SE L NL +++R+R+ +++A++ E Sbjct: 174 PDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A+++G LP + +PGY+ + +D G ++L A A L G +M M+ Sbjct: 234 TRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRML 291 >gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 329 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++H +R F +AL I+ ++RAG A+ + + P+ +EF + Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + ES+ + + ++ T + +Q Q+GGNL++ L N+SR +RDR +K +++ Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S IIG LP + ++ +PGYM + +P G LL AA L G+ V++ Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322 Query: 181 LMINFDV 187 +++ DV Sbjct: 323 KIVDIDV 329 >gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis SKA53] Length = 320 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 94/174 (54%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P+A+D++VRS+R G P S A+ + + DP+ +E + + G + E++ M Sbjct: 147 EQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETAYGRDMGETLKAMA 206 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + Q++ F + +++Q GGNL+E L LS+++R R + +V+A++ EAK S ++ Sbjct: 207 ERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAKWSGNLL 266 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 + P + P Y + ++ P V AAF+++ ++VMR + N V Sbjct: 267 SAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMRALTNIKV 320 >gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132] gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans ND132] Length = 324 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 98/170 (57%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F P ALD++ R+++AG + ++ + P+ EF + ++ + G+ + Sbjct: 143 RKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEINYGMDV 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S + + ++ FF +++Q + GGNL+E +A ++ ++R+R + K++ LS E Sbjct: 203 DRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SA+I+ +LPF ++ ++Y + Y+++L G ++ AA M+IG Sbjct: 263 GRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312 >gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2] gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira crunogena XCL-2] Length = 315 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + FP LD IVR++++G + A+++I + P+ E + V LG+S+ Sbjct: 134 KQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLGISM 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + + E FF + +Q + GG L+ L LSR++R R+ +AK++ L+ E Sbjct: 194 RDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAE 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ +A +G P YF P M +NDP G +L ++ M+ G ++++ M+ Sbjct: 254 SRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSML 311 >gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894] Length = 67 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/67 (65%), Positives = 55/67 (82%) Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASA IIG+LPF V+TLVY TSP YM +L DPRGH+++G++ +M IGI VMR Sbjct: 1 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60 Query: 181 LMINFDV 187 M+NFD+ Sbjct: 61 NMVNFDI 67 >gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 309 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 99/185 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L KR KF D ++L ++ +RAG + AV + Q+ P EF R++ Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L++++ + M ++ S+ S I + ++GG+L++ L + R +R+R ++ +V+ Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E K SA+++ +LP + ++ SP Y+ + P G ++ M +G + ++ Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302 Query: 181 LMINF 185 +++F Sbjct: 303 KIVSF 307 >gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2] Length = 321 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 98/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + P A++++VRS+R G P S A+A++ + DP+ +E + + G + Sbjct: 140 KKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRDM 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ M + Q++ F + +++Q GGNL+E L L++++R R + +V A++ E Sbjct: 200 GETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAE 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AK S ++ + P + P Y + ++ P + + AF+++ ++VMR +++ Sbjct: 260 AKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVDI 319 Query: 186 DV 187 V Sbjct: 320 KV 321 >gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 301 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 2/184 (1%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60 + L +R +F FP+AL++++ +V AG + AV+ VGQ+ D V EF+ + + Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVS-FVGQNLDNEVGREFKNMGDRLK 173 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + + R + P E FF+ I GG L LA L R+L D + M+ K Sbjct: 174 LGESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKM 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA ++ ++P + ++Y +P +N +++DP+G +L L+G+ ++ Sbjct: 234 AMTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVW 293 Query: 181 LMIN 184 L++ Sbjct: 294 LLVK 297 >gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 323 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF + P+ L+++V +RAG A+ + + P+ EFRRV++ LG+ + Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++R +P ++ T I+VQ ++GGNL+E L +S +R+R +K +++ L+ + Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180 S + +P V ++Y + YM N P G++ L AA ++ G +VM Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316 Query: 181 LMINFDV 187 + + +V Sbjct: 317 KIGDIEV 323 >gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans DSM 11109] Length = 317 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 1/182 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P+A+D IVRS++ G V A + P+ ++FR + E +GL Sbjct: 136 RREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGLPFE 195 Query: 67 ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 I R P L +V +Q + GG L++ LA L+ +R R + + +V+A + E Sbjct: 196 TVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAE 255 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + +A+I+G LP + + + P YM V + P G LL V G +VMR M+ Sbjct: 256 GRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAMLRV 315 Query: 186 DV 187 V Sbjct: 316 KV 317 >gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1] Length = 300 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 99/182 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + ++P+ EF+ + + L Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P + ++ + +P ++ ++NDP+G +L LIG+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 300 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 99/182 (54%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+KKR F + FP+AL+I++ ++ AG + A++ + +DP+ EF+ + + L Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + R + P E FF+ + GG L LA L R+L D + + K A Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N +++DP G ++L +G++++ L Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 325 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 81/147 (55%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR F D + + ++ ++R G + ++ + P+ EFRRV++ LG + Sbjct: 140 KKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVGLGRTT 199 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ ++R MP +++ T +++Q ++GGNL++ L + +R+R +K ++Q L+ + Sbjct: 200 EEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQTLTAQ 259 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152 + S W+I LP ++ + +P YM Sbjct: 260 GRISGWVITGLPIGLAIFITMINPEYM 286 >gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 660 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ ++R F D P+AL ++ S+R+G V+ +V + G P+ E R + Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S +++ + M +++ + I +Q ++GGNLSE + + +R+R ++ +++ Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALS E + SA+++ +LP L+ + P YM L P G ++ +A + +G + + Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653 Query: 181 LMINFDV 187 ++ +V Sbjct: 654 KVVKVEV 660 >gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 283 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L ++R +F+ P+AL++I S++AG V++A+ + + P++ EF+ + Q L Sbjct: 98 RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ + ++ + + +P E + + +GGNL+E L LS LR + M+ K+ + Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + +Y P M ++ +P G ++ V++ + G M ++ Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277 Query: 182 MINFDV 187 +I DV Sbjct: 278 IITIDV 283 >gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum PSI07] Length = 325 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 92/177 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A D++ R++RAG A+ + + P+ SEF V + G+ + E+++ Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 R +P++++ F + +Q + GGNL+E L N+ ++R R + K++ LS E + Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 WI+ +P + L+YF +P ++ L P G LL A +G++ +R ++ V Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325 >gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 329 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R F + + + ++ S+R+G + ++ ++ ++ P+ EFRRV++ LGLSL + Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ ++R +P ++ + I++Q+++GGNL+E L ++ +R+R +K +++ L+ +A+ Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183 S +++ LP ++ ++ +P YM L+ P + V +A M+I G ++ ++ Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325 Query: 184 NFDV 187 N ++ Sbjct: 326 NIEI 329 >gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 282 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 100/187 (53%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F P M L N+P G L V +G + + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 KITNIDV 282 >gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis 3_1_45B] Length = 326 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 T + P A+D I R RAG+P A + + E R + LG+ L + Sbjct: 148 TEELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQV 207 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + +PL E FF+ ++ + + GG L++ L L+ LR+R + KVQA + EA+A Sbjct: 208 LQESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARA 267 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 S I+ L V Y +P L+ DP G +LG AAA + G+ V LM+ Sbjct: 268 SIKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323 >gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis Och 149] Length = 320 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G + Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179 K S + + P ++ P Y + + R H L+GV F+ + + VM Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGV---FLALNLFVM 312 Query: 180 RLMINFDV 187 R++ + V Sbjct: 313 RILTDIKV 320 >gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51] gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51] Length = 293 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 97/178 (54%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ ++ P LD VRS++AG ++DAV + S +P+R+ RV LG+ L Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + E+ F+ + + + GGN SE + NL +++R+R+ +++A++ E Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A I+G+LP + +P Y+ + D G ++L +A A ++G +V+ M+ Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMM 290 >gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 281 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 KH K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L Sbjct: 96 KHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVKL 155 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L E++ M R + ++ ++ QLGGN++E +S ++R+R ++ K+ A Sbjct: 156 GVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKIDA 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K WI+ ++P + ++ + P M +++ G +L+ + A ++GI+++R Sbjct: 216 LTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIRR 275 Query: 182 MINFDV 187 ++N D+ Sbjct: 276 IVNIDI 281 >gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 302 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 2/182 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61 +L++KR F + FP+AL+I++ +V +G + A+A VGQS D + EFR + E L Sbjct: 118 YLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAY-VGQSLDNQIGLEFRDMGERLKL 176 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + R + P FF I GG L +A L R+L D + + K A Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ SLPF L+ + SP ++ ++ DP G +L +G+ ++ L Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296 Query: 182 MI 183 +I Sbjct: 297 LI 298 >gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CMR15] Length = 325 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ + Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMG 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E Sbjct: 205 DALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++ Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324 Query: 187 V 187 + Sbjct: 325 I 325 >gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 325 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 96/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P A D++ R++RAG + A+ + + P+ +E V + G+ ++ Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMN 204 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ + +P++++ + + +Q + GGNL+E L N+ ++R R + KV+ LS E Sbjct: 205 DALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + WI+ LP V +VY +P ++ L DP G +L A +G++ +R ++ Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324 Query: 187 V 187 + Sbjct: 325 I 325 >gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter denitrificans OCh 114] Length = 320 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR A + P+A++++VRS+R G P S AV ++ + DP+ SE + + G + Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + +Q++ F + +++Q GGNL+E LA L++++R R + +V+A++ EA Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179 K S + + P ++ P Y + + R H L+G+ F+ + + VM Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGI---FLALNLFVM 312 Query: 180 RLMINFDV 187 R++ + V Sbjct: 313 RVLTDIKV 320 >gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3] gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3] Length = 308 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 94/176 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 ++ +F FP ++ I R+V AG+ V A+A + + EF + + +G+SL Sbjct: 127 QQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIGISLK 186 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P FFS + + + GG L E L +LSR L + +K K+++L+ E Sbjct: 187 QALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSLTAEP 246 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A ++ LP C+ +++YF SP VL + P G+ +L M +G+ ++ ++ Sbjct: 247 RMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302 >gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus equi 103S] gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit [Rhodococcus equi 103S] Length = 622 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615 Query: 181 LMIN 184 +++ Sbjct: 616 KVVS 619 >gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707] gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707] Length = 623 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 104/184 (56%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R A F D ++L ++ ++RAG + A+ + ++ P EF R++ Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L+ES+ + R M + ++ + I++ ++GG+L+E L + +R+R ++ +V+ Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ E K SA+++ +LPF ++ + ++P Y++ L G++++ V + +G + M Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616 Query: 181 LMIN 184 +++ Sbjct: 617 KVVS 620 >gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia solanacearum CFBP2957] Length = 325 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 94/172 (54%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A D+I R++RAG + A+ + + PV E V + G+S++++++ ++ Sbjct: 154 LPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGLIDR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ + Sbjct: 214 VPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILTA 273 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 274 LPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa W1219] gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa W1219] Length = 294 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 93/179 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR A F P AL II +R+G A+A + +P+ E +RVI + G L Sbjct: 113 KKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRKL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ES+ + E+ ++ +++Q + GGNL+E + ++ + DR N++ +++ L+ + Sbjct: 173 EESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTTQ 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + S +IG LP + ++ + SP YMN G ++L V+ G ++++ ++N Sbjct: 233 GRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291 >gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 652 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 96/172 (55%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +L ++ S+R+G + A+ I + DP+ EF R + +G +++++ RM Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 M + + I +Q ++GGNL+E L +R LR+R+++ +V+ALS E + SA+I+ + Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 LP + + + + GY+++L P G M+L ++ GI MR ++ +V Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652 >gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 332 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 99/185 (53%), Gaps = 4/185 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R F + + + ++ ++R G + ++ ++ P +EFRRV++ LG S Sbjct: 148 QRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVGLGRSTE 207 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ ++R MP ++ T +++Q ++GGNL++ L + +R+R +K ++ L+ + Sbjct: 208 EALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEISTLTAQG 267 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRLM 182 + S+WII LP ++ + +P YM L P+ + VA+ FM+ +G ++ + Sbjct: 268 RISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGYFAIQKI 327 Query: 183 INFDV 187 I+ +V Sbjct: 328 IDIEV 332 >gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1 [Ralstonia solanacearum UW551] gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 325 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 94/173 (54%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++ Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645] gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645] Length = 310 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 82/160 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +R F D FP+AL++I R+VRAG A+ ++ S DP+ EFRR + +GLS Sbjct: 129 NRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVGLSA 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M + L +V F+T ISV + GG L E L L+ ++RDR ++++++ Sbjct: 189 PKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSITSS 248 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 + SA II L + P Y + P G LL Sbjct: 249 GRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLL 288 >gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2] Length = 325 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 94/173 (54%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P A D+I R++RAG + A+ + + P+ E V + G+S++++++ ++ Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 +P+ ++ + I +Q + GGNL+E L N+ ++R R + KV+ LS E + WI+ Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 +LP ++ +VY +P M+ L DP G ++ A A G++ +R ++ + Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325 >gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272] Length = 314 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 4/190 (2%) Query: 2 KHLIKKRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57 K +K RTAK +F LD ++ S+RAG A+ + P++ E R++ Sbjct: 125 KMWVKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILN 184 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG + S++ M ++ + + + + + GGNL+E + +++++RDR ++ Sbjct: 185 ENRLGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIRE 244 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 KV A + E + S++I+ SLP ++ F +PGY++ L + G L+G + I + Sbjct: 245 KVHAYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFL 304 Query: 178 VMRLMINFDV 187 MR++++ V Sbjct: 305 WMRIIVDIKV 314 >gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 89/161 (55%) Query: 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86 +RAG+ ++ A +V +S P+ EF ++ Q LG++L +S++ + R +P + + Sbjct: 1 MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60 Query: 87 VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146 + + ++ GG L+EAL S +R R M+ K+ AL+ + K AW++G LP + ++ Sbjct: 61 AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120 Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P M+ L + G L V A ++G++++R ++ DV Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161 >gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum 3TCK] Length = 302 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 LIKKR +F FP+AL+I++ +V AG V +++ + + V F+ + E LG Sbjct: 119 LIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLGE 178 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R ++ P FF I GG L +A L R+L D + + K A++ Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAMT 238 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA I+ SLPF ++ F SP +N ++ DP G +L +G+ ++ L+I Sbjct: 239 SEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLLI 298 >gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 272 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 101/185 (54%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L ++R +F P AL ++ ++RAG+ ++ + +V QS P+ EF ++ Q LG Sbjct: 88 QLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQRLG 147 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++ + MP S + + SQ GGNL+EAL ++++ LR R ++AK+QAL Sbjct: 148 VPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQAL 207 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + AWI+G+LP + ++ P M +L + P G +L + G++++R + Sbjct: 208 TSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIRRI 267 Query: 183 INFDV 187 + ++ Sbjct: 268 VRIEL 272 >gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter alkaliphilus HTCC2654] gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium HTCC2654] Length = 316 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 95/181 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR P+ALD++ R + G P++ + + DP+ +EFR + + G SL+ Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R + +++ + S + +Q GGNL L L+R++R R M+ +V A+S E Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +A I+ ++P + T+P Y + +DP + G A +L +++R +++F Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315 Query: 187 V 187 V Sbjct: 316 V 316 >gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 311 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 1/180 (0%) Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L++ R + D F L + R+V AG+ V A+A I + EF + + +G Sbjct: 127 LMRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIG 186 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L +++++ +P FFS + + + GG L E L +LSR + D +K K+++L Sbjct: 187 IGLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSL 246 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A I+ SLP + ++YF +P L PRGH++LG M +G+ ++ L+ Sbjct: 247 TAEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLL 306 >gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 327 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 101/183 (55%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR D +A+ +I S++AG AV ++ + + P+ EF ++ + + G + Sbjct: 145 IKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVNFGTT 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ +V + ++ T + +Q Q+GGNLSE L N+S +R+R +K +V+ ++ Sbjct: 205 TEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVKTVTA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + + S II +LP + +++ + ++ VL DP G ++LG + +IGI + +++ Sbjct: 265 QGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFISRIVS 324 Query: 185 FDV 187 +V Sbjct: 325 IEV 327 >gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1] gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 314 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313 >gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649] gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649] Length = 654 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 101/187 (54%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF P+ L ++ ++ +G ++ A+ + S+ P EF R + Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G +S+++ M M + + + + I +Q +GGNL++ L + LR+R+++K +V Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LS E + SA+I+ LP + + +++P Y ++L G ++L + M+IG + MR Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647 Query: 181 LMINFDV 187 +I +V Sbjct: 648 KVIQIEV 654 >gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116] Length = 301 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 94/180 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L KR F FP+AL+I++ +V AG + A + + V EF+ + + LG Sbjct: 117 LQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLGE 176 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + R + P E FF+ I GG L LA L RIL D + +++K A++ Sbjct: 177 NAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAMT 236 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA ++ ++P + +V P +++ ++NDP+G M+L ++G+ V+ L++ Sbjct: 237 SEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLLV 296 >gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp. BTAi1] gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium sp. BTAi1] Length = 329 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 1/159 (0%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +K+T + F+D FP+A+D + R +RAGLP++ A+ + S PV F + + +G+ Sbjct: 145 QKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELRIGVP 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L E++ R + L + FF+ +++Q GGNL+ L +LS I+R R+ + K +A + Sbjct: 205 LEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAKAATG 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 E + +A+ +G++P + + P Y+ L DPRGH+ Sbjct: 265 EIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHL 303 >gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 314 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P +I R+VR+G V+ A+ +I P+R EF E Q LG+ Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++ + E+ F + VQ++ GG+L E L NLS+++ R ++ +++AL+ E + Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A ++ LPF + SP Y L+ PR + GV+ IG +++R ++NF+ Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313 >gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein [Acidobacterium capsulatum ATCC 51196] Length = 323 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 97/181 (53%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R KF P+++D++ R++RAG V+ A+ V+ Q +PV SEF V Q+ GL Sbjct: 143 QRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQNFGLPFR 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ +P ++ F T + VQ + GGNL+E L + ++R+R ++ +V+ + + Sbjct: 203 DAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVKTKTAQG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + + I+ LP + L+ +P Y L DP G +L A + +G + ++ + Sbjct: 263 RLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFINKIVKIE 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9] gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium profundum SS9] Length = 302 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L+KKR +F FP+AL+I++ +V AG + +++ + + V + F+ + E LG Sbjct: 119 LLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLGE 178 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + R ++ P FF I GG L +A L R+L D + + K A++ Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMT 238 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA I+ SLPF + F SP +N ++ DP G +L +G+ ++ L+I Sbjct: 239 SEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLLI 298 >gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans C54] Length = 281 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 92/176 (52%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F P AL ++ ++RAG+ + A+ +V Q P+ EF ++ Q LG+ E+++R Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + M + + + Q GGNL+EAL ++++ L R ++A+++ L+ + + AW Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 I+G+LP + + P M L + P G +L V G++++R ++ D+ Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281 >gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 282 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 97/186 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + +KR D P+AL ++ ++RAG A+ +V +S P+ EF ++ L Sbjct: 97 KKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L +++ M + +P+ + + I++ ++GGNL+E L +++R LR++ M+ K++A Sbjct: 157 GVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K ++ LP + ++ P M L + P G L V A L+G + Sbjct: 217 LTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae pv. oryzae str. 1_6] Length = 294 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 92/171 (53%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 ++ P LD VRS+++G ++DAV + ++ P++ R+ LG+SL ++ Sbjct: 121 IEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARDF 180 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 E F+ + V + GGN SE + NL R++RDR+ +++A++ E + +A + Sbjct: 181 AELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTALV 240 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +G LP ++ +P Y+ + ND G +LL +A A L+G +++ M+ Sbjct: 241 LGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRML 291 >gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 282 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 94/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P+AL ++ S+RAG+ S A+ V+V P+ E V+ QH+G+ Sbjct: 101 RRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMGVRA 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + +P+ + F + +++ ++GGNL+E LA L+ LR R M+ KV+AL+ + Sbjct: 161 DEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 K ++ LP + + M + + G +++GV +G + + ++ Sbjct: 221 GKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKIMTI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385] Length = 299 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 95/181 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L +KR +F D+ P+ +D ++R++R G P+ I Q F ++++ + Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++++ + + MP+ E F + V+S+Q + GG L+ L L LR R + A +Q Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ SA ++ +LP V +++ T + N L+ G +++ +L G+ ++R Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293 Query: 182 M 182 M Sbjct: 294 M 294 >gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus obscurus DSM 43160] Length = 310 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 88/169 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R A F D ++L ++ S+RAG + AV + +++ P EF R++ +G L Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + M + + + I + ++GGNL+E L + +R+R ++ +V+ALS E Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K SA ++ +LPF + + T+P Y+ G++++ + +G Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVG 298 >gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 294 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 93/179 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + R + ++ P LD VRS+++G +SDAV + + P++ R+ LG+SL Sbjct: 114 RVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQLGVSL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ E F+ + V + GGN SE + NL R++R+R+ +++A++ E Sbjct: 174 PDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + ND G ++L +A L+G +++ M+ Sbjct: 234 TRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLWRMLR 292 >gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 282 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 95/182 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ LG+ + Sbjct: 101 KKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIRLGIDM 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ + Sbjct: 161 DIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIKALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L +P G L V +G + + + N Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 327 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 102/186 (54%), Gaps = 4/186 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ + Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181 + SA++I LP ++ + +P YM+ + + P L VA M+ IG + Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321 Query: 182 MINFDV 187 +++ +V Sbjct: 322 IVDIEV 327 >gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia mirabilis ATCC 51599] Length = 291 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++HL +R F P+A+ +I +VRAG ++ A+ + + P EF ++ Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG++L +++ + R M ++ F + + ++ GGNL+E L L+ +R + ++ K+ Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + W++ LP V ++ P M L++ +G ++ V A ++G++ +R Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284 Query: 181 LMINFDV 187 ++ D+ Sbjct: 285 RIMAIDI 291 >gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 367 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F P+AL ++ ++++G A V+ + P+ EF +++ + + L Sbjct: 186 QQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETRVNIPL 245 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ ++ +P ++ T + +Q Q+GGNL+ L + +R+R ++ +++ L+ + Sbjct: 246 EDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 305 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + S WI+G+LP + L+ +P Y+ L+ P G LLG G++V+R +I Sbjct: 306 GRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIRALIRV 365 Query: 186 DV 187 DV Sbjct: 366 DV 367 >gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 284 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 98/184 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R K P+ L ++ S+RAGL + A+ + + P+ EF V+ Q +G+ Sbjct: 101 LKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMGV 160 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ +P+Q+V+ F + +++ ++GGNL+E+L +L+ LR R M+ KV++L+ Sbjct: 161 KLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSLT 220 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + T + P M+ L + P G ++ VA +G + ++ Sbjct: 221 AQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKIV 280 Query: 184 NFDV 187 D+ Sbjct: 281 TIDI 284 >gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 327 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 101/186 (54%), Gaps = 4/186 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R KF + ++++ S+R+G + ++ ++ ++ +P SE+RRV++ LGL Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +++ +P +++ T + +Q + GGNL++ L + +R+R +K ++ L+ + Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181 + SA++I LP ++ + +P YM + + P L VA M+ IG + Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321 Query: 182 MINFDV 187 +++ +V Sbjct: 322 IVDIEV 327 >gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA] gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA] Length = 325 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 325 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 93/185 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +R K P A D+I R++RAG + A+ + + P+ +E V + G Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S+S++ + + +P+ ++ + I +Q + GGNL+E L N+ +++R R + KV+ L Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 S E + WI+ LP + +Y +P M+ L G LL A +G++ +R + Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320 Query: 183 INFDV 187 + + Sbjct: 321 VRIHI 325 >gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+AL I ++RAG +S AV V+V P+ EF V++ Q LG+S Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVSF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ ++QAL+ + Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQ 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ P + ++Y P M +L + G +L V + +G ++R ++ Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVAI 283 Query: 186 DV 187 D+ Sbjct: 284 DI 285 >gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 282 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ L Sbjct: 97 KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++A Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + + ++ LP + ++ F P M L P G L V L+G + Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276 Query: 182 MINFDV 187 + + DV Sbjct: 277 ITHIDV 282 >gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 285 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+AL I ++RAG +S A+ V+V P+ EF V++ Q LG+S Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVSF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++I +M + + + + + V ++GGNLSE L L+ LR + ++ +++AL+ + Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQ 224 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ P + ++Y P M++L G ++L V A +++G ++R ++ Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVAI 283 Query: 186 DV 187 D+ Sbjct: 284 DI 285 >gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 295 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292 >gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 295 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 94/178 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +A ++G LP ++ +P Y+ + ND G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292 >gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 323 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 94/181 (51%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR KF +AL I+ S+R+G A+ ++ + P+ EF ++ + G Sbjct: 143 KRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMNWGTPTE 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ MV + +++ T + +Q Q+GGNL+E L ++ +R+R +K +++ L+ + Sbjct: 203 EALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQG 262 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + S IIG LP +S ++ + YM VL G ++ A F ++G+ +++ +I Sbjct: 263 RISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIKKIIKIP 322 Query: 187 V 187 V Sbjct: 323 V 323 >gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis ATCC BAA-548] Length = 294 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 99/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ L +R KF +AL +I S++AG ++ A+ + Q+ P+ EFR +I+ Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +++ M R + ++ +T I Q GG L+ L ++ ++R+R + KV+ Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + A +I P + +++ +P + + +P G LL VA F +IG +++R Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287 Query: 181 LMINFDV 187 ++ +V Sbjct: 288 RIVTIEV 294 >gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 294 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 322 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 94/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + + P+A++++VRS+R G P ++ + + SDP+ SE + + G + Sbjct: 141 KKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDV 200 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +ESI M + +Q++ F + + +Q GGNL+E LA L+ ++R R + KV+ ++ E Sbjct: 201 AESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAE 260 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+ S + P + P Y + +I+ P A + + ++MR+++N Sbjct: 261 ARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI 320 Query: 186 DV 187 V Sbjct: 321 KV 322 >gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 282 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR P+AL ++ ++RAG A+ +V ++ P+ EF ++ LG+ L Sbjct: 101 KKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLGIDL 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + +P+ + + +++ ++GGNL+EAL +++R LR++ M+ K++AL+ + Sbjct: 161 DIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L P G L V L+G + + N Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus 12B01] Length = 300 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 95/182 (52%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R +F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L +A L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P + ++ DP G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 282 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 98/187 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K + KKR P+AL ++ ++RAG A+ +V +++ P+ EF ++ Sbjct: 96 LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L ++ + + +P+ ++ + +++ ++GGNL+EAL +++R LR++ M+ K++ Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AL+ + + ++ LP + ++ F M L ++P G L V +G + Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275 Query: 181 LMINFDV 187 + N DV Sbjct: 276 RITNIDV 282 >gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12] gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea DSS12] Length = 311 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 90/172 (52%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F FP L I R+V AG+ V A+A + + EF + + +G+SL +++ Sbjct: 135 QFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQTLE 194 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + +P FF+ + + + GG L E L +L R L D +K K+++L+ E + +A Sbjct: 195 QACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRMTA 254 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I+ SLP + ++++F +P VL N GH +L + + +G+ ++ ++ Sbjct: 255 LILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINML 306 >gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804] gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii] Length = 281 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 92/158 (58%) Query: 30 GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89 G+ VS A+ IV S P+ EF ++ Q LG+S +++R+ + +P + + + + Sbjct: 124 GVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALARLSQRVPSEASALVAAALR 183 Query: 90 VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 V + GGNL+E L ++R LR+R ++ KV+AL+ + + AWI+G+LP ++ ++ P Sbjct: 184 VATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAWIVGALPLLLAAVLDRMEP 243 Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 M +L + P G +L V A G++++R +++ D+ Sbjct: 244 DAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281 >gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 294 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 294 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +H + +F P+ +D + R+V+ G P+ D + S+ + +R+ H Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164 Query: 62 GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 L L S+ R++++ MP QE F +T++S+QS+ GG LS L L + LR+R M++ Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 +V+ ++ E++ SA ++ LP + ++Y ++ + + L+ D G +L ++ G++ Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284 Query: 178 VMRLMINFD 186 ++R + F Sbjct: 285 LIRQLTKFK 293 >gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato str. DC3000] gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato Max13] gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato K40] gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 295 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 94/179 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLWRMLR 293 >gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 295 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 94/179 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ E F+ + V + GGN SE + NL +++RDR+ +++A++ E Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +A ++G LP ++ +P Y+ + +D G ++L +A ++G +++ M+ Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLWRMLR 293 >gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603] gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451] Length = 303 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223] Length = 303 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573] Length = 303 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 +TAKF +FP+AL+I+ ++ AG + A + Q + V EF+ + E +G E Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L E + ++RI+ D + + K AL+ EA+ Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +SA II +LP ++ FTSP N ++ + G + LIG + +++ Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299 >gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01] gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116] gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01] gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116] Length = 300 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 94/182 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 ++L+ +R F + FP+AL+I++ +V AG + A++ + + + EF+ + + L Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ DP G ++L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 322 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 96/176 (54%), Gaps = 4/176 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D P+A++++VRS+R G P++ A+ + + DP+ +EF + + G ++ +S+ + Sbjct: 149 DQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVVDSLRDLA 208 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +Q++ F + +S+Q GGNL+E L L++++R R + +V+A++ E K S + Sbjct: 209 ERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPKWSGVFL 268 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187 + P V ++ +P Y + + + P + F L+G ++ M++M V Sbjct: 269 SAFPVAVLVVIQVVAPTYYDNVKDSP--SFVPAALIVFALLGANVLFMKIMTTIKV 322 >gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 93/183 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ KR F + FP+AL+I++ +V AG + A+ + + + EF+R+ + L Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ I GG L LA L R+L + + ++ K A Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ +P L+ + +P ++ +++DP G LL +G+ ++ L Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293 Query: 182 MIN 184 ++ Sbjct: 294 LVK 296 >gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 294 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae B728a] Length = 294 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 294 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L VA A + G +V+ M+ Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291 >gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 300 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 94/182 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L+ +R F + FP+AL+I++ +V AG + A++ + +P+ EF+ + + L Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S + R + P E FF+ + GG L LA L R+L D + ++ K A Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ EA+ SA I+ ++P ++ + +P +N ++ D G ++L L G+ ++ L Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293 Query: 182 MI 183 ++ Sbjct: 294 LV 295 >gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane part [Cupriavidus metallidurans CH34] Length = 309 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++ K L P LD +VR + G V A V + P+R +VI Q G Sbjct: 128 IRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGKE 187 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +M R L E+ S+V+ + + GG + + +RDR+ + ++ ALS Sbjct: 188 LDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSA 247 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V ++ + GY+ ++ DP G +L AA + G Sbjct: 248 ETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAG 298 >gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 309 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 97/184 (52%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I K+ +F +AL I+ +RAG ++ A+ + DP+ SEFR Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ + +S++ M +++ + + +Q Q+GGNL+E L N+S+ +RDR +K V+ Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + + S I+G +P + ++ SP Y ++ GH+++ ++ +G + + Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302 Query: 181 LMIN 184 +++ Sbjct: 303 KIVD 306 >gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246] Length = 330 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K+L A +++ R +R G V++A VG DP+ EF R + G+ + Sbjct: 157 KYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAFR 216 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M + E+ F +++Q Q GGNLSE L L+ ++R R ++ K++AL+ E + + Sbjct: 217 EMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQS 276 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + LP V ++YF + Y L+ R +LLG + +G + +R ++NF+ Sbjct: 277 RTLTVLPVVVFAMMYFLNRPYAEGLLAQWR--LLLGTVTC-VAVGTLWIRNIMNFE 329 >gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105] gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105] Length = 302 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 88/179 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + L PN LD +VR G ++ + + + P++ ++ Q+ GL L Sbjct: 122 RKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAGLEL 181 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ R+ R L E ++V+++ GG L L++ LRDR+ ++ A+S E Sbjct: 182 DQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAMSSE 241 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + L ++ ++ +P Y+ + ND G MLL VA + G ++ M+ Sbjct: 242 ARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRMVK 300 >gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 309 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 88/169 (52%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R AKF + + +++ +R G V +V ++ P E R++ +G Sbjct: 129 RRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGKDSR 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 + + M ++ + S I + ++GG+L+E L ++ +R+R +K ++++LS E Sbjct: 189 LAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEG 248 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K SA+++ ++P V+ ++ F + GY+NV + P G ++L +A +G Sbjct: 249 KMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVG 297 >gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7] Length = 294 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 90/176 (51%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L +A A + G +V+ M+ Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRML 291 >gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT] gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT] Length = 303 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/180 (21%), Positives = 93/180 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++R + P +D + R++ G V AV + P+R+ RV+ LG Sbjct: 122 LQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGAG 181 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ + ++E+ + I + S G + E L ++ +++R ++ + ++ A++ Sbjct: 182 FADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTG 241 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E K +AW++ P + ++ +PGY+++++NDP G ++ A A ++G+++ M+ Sbjct: 242 ETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMMK 301 >gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella multacida DSM 20544] Length = 319 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 88/170 (51%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 KF + + L ++ ++RAG A +I + P+ E + V+ +LG +L ++ Sbjct: 143 KFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESALD 202 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 M R + + T + +Q Q+GG+L+ L +S + +R M+ +V L+ + + S Sbjct: 203 NMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG 262 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ LPF ++ ++ F P Y+ L+ D G +++G+A LIGI ++ Sbjct: 263 IVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIK 312 >gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 294 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 4/178 (2%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYF--TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP +ST YF +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 236 MTAVVLALLP--ISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 291 >gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 321 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 86/181 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K A+ P LD VR V G V A + + DP++S + G+ L Sbjct: 137 QKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 196 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 197 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 256 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + +D G ++GVAAA + G++++ + Sbjct: 257 TRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLYRLAKL 316 Query: 186 D 186 D Sbjct: 317 D 317 >gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 307 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 307 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F + FP+AL+++ +V AG + AV V VG+S D V EF+R+ E LG Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + Q GG L E + L+R++ + ++ K AL Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA I+ ++PF ++ + SP ++ +P G +L IGI+++ L+ Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100] gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100] gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 95/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + ++R KF+D + L I+ ++AG +++ +V +P+ EF +V+ + Sbjct: 106 RMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + I+ +PF + + P ++ + N G +LL +IG ++++ Sbjct: 226 LTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIKK 285 Query: 182 MINFDV 187 ++ V Sbjct: 286 LVTIKV 291 >gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 1/180 (0%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ AL Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 S E + SAW++G LP V+ ++ + GY+ ++ DP G +L AAA + G +M+ RL Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304 >gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 293 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + +D G ++L A A G +V+ M+ Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 290 >gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 294 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv. aesculi str. 2250] gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 294 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 304 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 93/181 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +++ KF +FP+AL+I+ ++ +G + A + Q ++ V +EF+ + E +G Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ +P G + IG + + L+ Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299 Query: 183 I 183 + Sbjct: 300 L 300 >gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. B076] gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 294 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 88/176 (50%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + P LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291 >gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9] Length = 281 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 90/179 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K LIKKR K + FP+ L + ++++G + ++ +I S P+ EF + L Sbjct: 95 KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ES++ +++ P +S F T++ V + GGNL+ L LS +R+ + K+ A Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ +++ +WI+ LP + ++ +P N G+ L + + G + M+ Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMK 273 >gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 304 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 92/180 (51%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ KF ++FP+AL+I+ ++ +G + A + Q + V +EF+ + E +G Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ +P G + IG + + ++ Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300 >gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 296 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 87/179 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +L+ +R + +AL ++ +RAGL V A+ ++V + PV EF +++ Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ L E + + +P ++ F + I++ + GGNL+E + ++R+R +K K+ Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + + I +P+ + + + + P + + P G +L A AF G V+ Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVI 288 >gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O] Length = 305 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 >gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 312 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 6/175 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 131 VRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQRAGKE 190 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ +M R LQE+ ++V+ + + GG + + +RDR+ + ++ ALS Sbjct: 191 LDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELMALSA 250 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173 E + SAWI+G LP V ++ + GY+ ++ DP G + L +A AFML Sbjct: 251 ETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFML 305 >gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110] gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110] Length = 338 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 1/179 (0%) Query: 6 KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++R A + P+A+ ++ +VR+GLPV +A + + P +F V +LG Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ + R + E + F+ ++VQ + GG+L+E L NL +R R + A+ +AL+ Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 E S+ + P ++Y ++P +++L DP G+ LL A A +L+G +V+ M+ Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMV 332 >gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6] Length = 305 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300 >gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 322 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 84/181 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K A+ P LD VR V G V A + + DP++S + G+ L Sbjct: 138 QKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 197 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 198 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 257 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + ND G ++ AAA + G++++ M Sbjct: 258 IRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLYRMAKL 317 Query: 186 D 186 D Sbjct: 318 D 318 >gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016] Length = 305 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 90/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L + + AKF +DFP+AL+I+ ++ +G + A + Q + V +F+ + E +G Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +SR P E FF+ I + GG L E ++ ++RI+ + + + K AL+ Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ SA II LP ++ FTSP N ++ + G + +IG + + ++ Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300 >gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7] gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7] Length = 282 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 97/182 (53%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R +F + P+ L + ++RAG + A+ IV QS P+ EF ++ Q +G+ Sbjct: 101 KLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQRMGIGF 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + R MP + + +++ +Q GGNL+E L +++ LR R + ++VQAL+ + Sbjct: 161 EQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + AWI+ LP ++ ++++ P M L P G ++ ++GI +R ++ Sbjct: 221 GRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIRRIVAI 280 Query: 186 DV 187 + Sbjct: 281 TI 282 >gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 321 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 91/187 (48%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R F + L ++ S+RAG + +I + P+ +EF V+ Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG ++ +++ M + + ++ S T + +Q Q+GGNL+ L + + +R ++ +V Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 L+ + K S ++ +P + TSP Y+ L+ G M +G A +IG +++ Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314 Query: 181 LMINFDV 187 +++ + Sbjct: 315 RIVDIKI 321 >gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 318 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 3/171 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+A D++ R++RAG V A VI + P++ EF E QHLG+ ++ + R Sbjct: 150 LPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRDLARR 209 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + E+ F + + + GGNL+E L NL+ +LR R + +++AL+ E + A ++ + Sbjct: 210 TSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAVVLIA 269 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 LP + ++Y + Y VL++ P MLL LIG + +R +I+ + Sbjct: 270 LPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317 >gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 294 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 95/185 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + L ++ +F P +D ++R++R G P++D ++ Q + F ++ + + Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G +++ + + + + E F + V+S+Q + GG LSE LA L LR R+ + A +Q Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 ++ E++ +A ++ +LP + +++ T + L+ G +LG + + +G+ ++R Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288 Query: 182 MINFD 186 + Sbjct: 289 LTRLQ 293 >gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus] Length = 291 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 96/186 (51%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + +KR A+F+D + L I+ ++AG +++ +V +P+ EF +V+ + Sbjct: 106 RMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++ + +P +V F T I++ + GGNL+E + ++R+R+ ++ K+QA Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + I+ +PF + + P ++ + + G +LL +IG ++++ Sbjct: 226 LTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIKK 285 Query: 182 MINFDV 187 ++ V Sbjct: 286 LVTIKV 291 >gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 306 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 1/181 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64 KKR+ +F +AL +I ++R G +++ + +P+ SE +RVIE + +S Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ R+ + E +T + +Q + GGNL+ + ++ + R +K KV++ + Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 A+ SA + ++PF V + SPGYM+ P ++ AA IG+ ++ M Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302 Query: 185 F 185 F Sbjct: 303 F 303 >gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX] gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX] Length = 310 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 10/186 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F P ++ + +AGL + A+ + + +DP +E R V E+ +G Sbjct: 129 EKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIKVGQPF 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E+++ + + MP +E+ + + V ++ GG L AL N+S L +RK + +V+ + E Sbjct: 189 EEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVRTILSE 248 Query: 126 AKASAWI-----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++AW +GSL F ++ L+ PG + + G ++LG A IG +V+R Sbjct: 249 TTSTAWTLLLMGVGSL-FLLNALM----PGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303 Query: 181 LMINFD 186 M D Sbjct: 304 RMSRID 309 >gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797] gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797] Length = 310 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 94/181 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR ++ P +D++ RS AG + A+A++ ++ P+ EFRR + LS+ Sbjct: 129 KKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLDMNLSV 188 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + + L ++ ++ + + + GGNL L ++ ++RDR N + +++A + Sbjct: 189 PAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGA 248 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +ASA ++ + ++ P +++ L DP G++LL +A +IGI+ + ++ Sbjct: 249 GRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVSTLLRT 308 Query: 186 D 186 D Sbjct: 309 D 309 >gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16] Length = 308 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 +++ K L P LD +VR + G V A + + P+R + + Q G Sbjct: 127 VRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAGKE 186 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L +++ ++ R ++E+ ++V+ + + GG + + +RDR+ + ++ ALS Sbjct: 187 LDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSA 246 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173 E + SAWI+G LP V+ ++ + GY+ ++ DP G + L +A AFML Sbjct: 247 ETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFML 301 >gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv. glycinea str. race 4] Length = 198 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + + LD VRS+++G ++DAV + + P++ R+ LG+SL + Sbjct: 20 RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + E F+ + V + GGN SE + NL +++RDR+ +++A++ E + Sbjct: 80 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 +A ++ LP ++ +P Y+ + ND G ++L +A G +V+ M+ Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 195 >gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 281 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 99/186 (53%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K+ K+R KF +AL + + +AGL A+ + ++ P+ EF ++ L Sbjct: 96 KYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVKL 155 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ L E++ M + + ++ ++ QLGGN++E +S ++R+R ++ K+ A Sbjct: 156 GVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDA 215 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 L+ + K WI+ S+P + ++ P M +++ G++L+ V A ++GI+++R Sbjct: 216 LTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIRR 275 Query: 182 MINFDV 187 ++N D+ Sbjct: 276 IVNIDI 281 >gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7] Length = 293 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 82/156 (52%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + P LD +VRS+ AG + DA+ V + DP+R F LG+ L Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 E++ + ++E+ + +SV + GGN ++ L + R++ +R+ + ++ A++ E Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + SA+++ +P + + ++PGY+ + D G Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSG 268 >gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct] Length = 295 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1] gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2] gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58] gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1] gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192] gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58] Length = 294 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14] gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1] gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719] gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 294 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 84/158 (53%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++R + + P LD +VRS+ AG + DA+ V + +P+R F LG+ Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L E++ + ++E+ + +SV + GGN S+ L ++ +++ +R+ + ++ A++ Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 E + SA+++ +P + + ++PGY+ + D G Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269 >gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44] Length = 327 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 82/181 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + P LD VR V G V A + + DP++S + G+ L Sbjct: 143 QKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + R L E+ + ++ + + GG + L ++ +RDR+ + + A++ E Sbjct: 203 ENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 262 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + SAW++ LP V L+ + Y + ND G ++ A A + G++++ M Sbjct: 263 TRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMAKL 322 Query: 186 D 186 D Sbjct: 323 D 323 >gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325] Length = 294 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ D ++ +R+ + +S SR Sbjct: 123 FPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDPVTVFEDSYSR 182 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T+I GG + E ++ L RI+ D K M+ K +A++ EA+ SA Sbjct: 183 Y----PYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSAM 238 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ S P + FT P + LINDP G +L LIG++++ ++ Sbjct: 239 IVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLM 290 >gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222] Length = 304 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 91/181 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 120 NLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIG 179 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL Sbjct: 180 EDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNAL 239 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ASA II LP ++ FTSP + ++ + G + A L+G + L+ Sbjct: 240 TSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWLI 299 Query: 183 I 183 + Sbjct: 300 L 300 >gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM 771] Length = 306 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 88/175 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +I KR L I S+R+G+ ++ A+A +G+ + + E +R+ Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S ++++ + + +P+ E + QLGGNL+E N+ + +R + ++ Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A + +AK A + G +PF V ++ SP Y+ +++ P G M+L ++ + +G Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLG 293 >gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio salmonicida LFI1238] Length = 303 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 2/182 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ +F D FP+AL+++ +V +G + A+ + VG S D V EF+R+ E LG Sbjct: 119 LGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAI-IFVGASLDGKVGKEFKRMGEQLQLG 177 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ ++++ K AL Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ S+PF ++ + SP ++ +P G +L IGI+ + L+ Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297 Query: 183 IN 184 + Sbjct: 298 MK 299 >gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326] Length = 306 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 83/165 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M L +++ +F FP+AL+++ +V +G + ++ + V EF+R+ E Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S + P + FF + Q GG L + + L+R++ D + ++ K Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 AL+ EA+ SA I+ ++PF ++ + SP + ++N P+G +L Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPIL 284 >gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633] gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633] Length = 289 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 110 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 169 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 170 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 229 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 230 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 286 >gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01] gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01] Length = 304 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R KF D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF++ I + GG L + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 +SA II +LP ++ TSP ++ + G ++L+ F LI M++R Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLIS-MILR 301 >gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810] gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329] Length = 304 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301 >gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466] gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034] gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037] gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030] Length = 304 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 + +F D+FP+AL+I+ ++ +G + A + Q + V EF+++ E +G + Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 184 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++R P E FF+ I + GG L + + ++RI+ + + ++ K AL+ EA+ Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180 ASA II +LP ++ TSP N ++ + G ++L+ A F I M++R Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301 >gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 284 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 89/185 (48%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L K+R + D P+ L ++ ++R G + + + S P+ E V+ Q LG Sbjct: 100 YLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQRLG 159 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + E++S + + Q+ + + + ++GGNL++ L L +R R M+ K++AL Sbjct: 160 VPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRAL 219 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K ++ +LP + + P L + RG +L +A ++G +R + Sbjct: 220 TSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIRKI 279 Query: 183 INFDV 187 ++ +V Sbjct: 280 VSIEV 284 >gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio splendidus LGP32] gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio splendidus LGP32] Length = 306 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 88/177 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298 >gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 313 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 M+ K R A+ L P+ LD +VR G + A V Q+S P+R + Sbjct: 129 MRRTTKLR-AQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 187 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++S + + + S VI V ++GG + L + +RD + + ++ Sbjct: 188 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ Sbjct: 248 ATTSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 306 >gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio sp. MED222] Length = 306 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 88/177 (49%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 HL K+ +F + FP+AL+++ S+ AG + + + + V EF+ + E +LG Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + + R P FF + Q GG L E ++ L+R + + + ++ K AL Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ SA I+G+ PF ++ F SP +++ P G +L IG++++ Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298 >gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus M045] Length = 315 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + +LG ++ Sbjct: 134 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLNLGRTV 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E Sbjct: 194 DDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L LV ++ G + + P G L+ ++ A +G +V+R + Sbjct: 254 VNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIRRLGRI 313 Query: 186 DV 187 +V Sbjct: 314 EV 315 >gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565] Length = 294 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 91/174 (52%), Gaps = 8/174 (4%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 +F P +D ++R++R G P++D I Q + R R+ H L + + ++ Sbjct: 118 QFRTGLPEVIDGMIRALRVGAPLAD----IFQQVARQQRGLMSRLFAQMHDELQVGQPVA 173 Query: 71 RMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++R + + E F + V+S+Q + GG LS+ LA L LR R+ + A +Q ++ E+ Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + SA ++ +LP + +++ T + L+ G ++G + + +G+ ++R Sbjct: 234 RNSAKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIR 287 >gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K A+ L P+ LD +VR G + A V Q+S P+R + G+ L Sbjct: 139 KLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSGMDLD 198 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + + S VI V ++GG + L + +RD + + ++ A + E Sbjct: 199 RALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSET 258 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAW++G LP + L+ +SP + +++DP GH +L +A L G ++ Sbjct: 259 RMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 311 >gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3] Length = 304 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 91/180 (50%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ +F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 121 LKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 APDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ + G + L+G + L++ Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300 >gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T] gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T] Length = 289 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 1/185 (0%) Query: 4 LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L+++R ++ P+AL +I +RAG+ ++ A+ +V + P+ EF + LG Sbjct: 105 LLRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L E++ + + + ++ + + ++ GG+L+EAL + +R + M+ K+ AL Sbjct: 165 IPLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGAL 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + K A ++G LP + ++ P M L + P G L V A ++G++++R + Sbjct: 225 TAQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRI 284 Query: 183 INFDV 187 + DV Sbjct: 285 VAIDV 289 >gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110] gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110] Length = 241 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 82/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P +D +VR + G A + + + P+R R G+ Sbjct: 60 LQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGVD 119 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 120 LDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSA 179 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAWI+G LP V T + +P Y + ND G ML+ +A L+G Sbjct: 180 ETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLG 230 >gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans DS-1] Length = 291 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEF-----RRV 55 +I R K ++ +A+ VR L V ++++V + QSS P+ EF RR+ Sbjct: 104 IIDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRI 163 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G ++ES++++ L E+ F T I + GG+L+ L+NL +R R + Sbjct: 164 AN----GAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAV 219 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 +V+ + + +ASAW++G LP V+++V S YM I +P G LL A + G Sbjct: 220 MREVRGSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFG 279 Query: 176 IMVMR 180 +MR Sbjct: 280 AFMMR 284 >gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp. damselae] gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae CIP 102761] gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp. damselae] Length = 306 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 2/181 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L K+ KF + FP+AL+I+ ++ +G + A+ V VG++ D V +EF + E LG Sbjct: 123 LQKRERKKFEESFPDALNILTSAISSGESIIHAI-VFVGKTLDGAVGNEFSLMGERLQLG 181 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + GG L + ++ L+RI+ D + ++ K AL Sbjct: 182 ESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKYAL 241 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA I+ ++PF ++ + SP ++ +P G +L IGI ++ L+ Sbjct: 242 TSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVWLL 301 Query: 183 I 183 + Sbjct: 302 M 302 >gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16] Length = 306 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 ++ +F FP+AL+++ +V +G + ++ + VG+S + V EF+R+ E +G S Sbjct: 126 RQQKEFEMAFPDALNMLASAVSSGESLMHSI-IFVGKSLEGSVGEEFKRMGERLQMGESP 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + P + FF + Q GG L + + L+R++ D + ++ K AL+ E Sbjct: 185 DTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSE 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A+ SA I+ ++PF ++ + SP + ++N P+G +L Sbjct: 245 ARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPIL 284 >gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1] gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1] Length = 295 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 93/182 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R+ KF+ P+AL + ++++GL + ++ +V +P+ EF +V+ +G L Sbjct: 114 KNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYRIGTDL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S + + + EV ++ I + +GGNL+ NL+ LR+ ++ K++A++ Sbjct: 174 NDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIKAMTAM 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + + ++P V+ + + M +L + G + LG+ +G+ ++ ++N Sbjct: 234 GSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIKKIVNV 293 Query: 186 DV 187 DV Sbjct: 294 DV 295 >gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14] Length = 318 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 5 IKKRT----AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 I +RT A+ L P+ LD +VR G + A V Q+S P+R + Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ L ++S + + + S VI V ++GG + L + +RD + + ++ Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E + SAW++G LP + L+ SP + ++++P GH +L +A L+G ++ Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLL 311 >gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886] Length = 308 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F +FP+AL+++ SV AG + A+ + + V EF+R+ E ++G S + Sbjct: 132 FERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLNIGESTDAVFRK 191 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + P FF + V GG L + L+R+L + ++++ K +A++ EA+ S++ Sbjct: 192 ACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEARMSSY 251 Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLL 165 I+ ++PF + ++ SP + ++NDP G LL Sbjct: 252 IVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLL 286 >gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4] gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4] Length = 283 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 84/159 (52%), Gaps = 1/159 (0%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ ++RAG V AV V + P++ E ++ LG SL E++ R P E Sbjct: 115 GVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPE 174 Query: 81 VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139 + +++ ++GG + +AL +++ +R+R +K +V+A + + SA ++G++P Sbjct: 175 TRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLW 234 Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++F +PG++ L+ P G V A +++G ++ Sbjct: 235 CLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273 >gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM 3645] Length = 317 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 3/184 (1%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H +RT P A I R++RAG + A+ ++ P+ EF E QHLG Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 ++ ++ MVR + + E+ F+ + VQ + GGNL+E L L+ ++R R ++ +V+AL Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + A ++ ++P V + +P Y +VL +L+G A + IG ++ + Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWE--HYEILIGCAIS-QCIGAFLISRI 312 Query: 183 INFD 186 +N D Sbjct: 313 VNID 316 >gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 330 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++K + + P +D +VR + G A + + P+R R G+ Sbjct: 149 LQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGVD 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + + ++E+ ++++ + + GG L ++ +RDR+ + ++ A+S Sbjct: 209 LDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMSS 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAWI+G LP V T + ++P Y L ND G ML+ A L+G Sbjct: 269 ETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLG 319 >gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S] Length = 297 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 88/175 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R ++ P +D + + G ++ A+ + + VRS V LG + Sbjct: 116 QRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLELGAPV 175 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++++ + + + E+S + I + GG++S L NL+ ILR+R +K +++A E Sbjct: 176 ADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELKAAISE 235 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 AK S ++ +P ++ +P Y++ + DPRGH L VA +G++VMR Sbjct: 236 AKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290 >gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32] Length = 304 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 89/180 (49%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ F +FP+AL+I+ ++ +G + A + Q + V EF+ + E +G Sbjct: 121 LKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLIGE 180 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + + R P E FF++ I + GG L + + ++R++ D + ++ K AL+ Sbjct: 181 DPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 EA+ASA II LP ++ FTSP + ++ + G + L+G + L++ Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300 >gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M] gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2] gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M] Length = 337 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326 >gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 316 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + L +R F P+ L + +RAG + A+ ++ P+ E R++ Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G L ES++ + R ++ + S I + ++GG+L+E L ++ +RDR +K +V+ Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ALS E + SA ++ +LP + + +P Y V Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVF 284 >gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1] gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1] Length = 337 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 84/171 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP +++ V T+P Y++ + NDP G MLL +A L G Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326 >gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 316 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 85/161 (52%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 + +R A+F + L ++ S+RAG + AV + ++ P + EF R++ LG Sbjct: 133 MTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVRLGR 192 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L +++ + ++ + + I + ++GG+L+E L +++ +R+R +K +V+ALS Sbjct: 193 DLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVRALS 252 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 E + SA+++ +LP + + + Y+ L P G ++ Sbjct: 253 AEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIM 293 >gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 297 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 69/121 (57%) Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 LG +++++ + + + E+S + I + GG++S L NL+ ILR+R +K ++ Sbjct: 170 ELGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKREL 229 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A EA+ S ++ +P L+ +PGY++ + DPRGH L VA A +G++VM Sbjct: 230 KAAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVM 289 Query: 180 R 180 R Sbjct: 290 R 290 >gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 300 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 6/182 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R P AL + +VR+G +S+A ++ + P+ EF + LG + Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++RM +PL E F+T + V + GGNLS +S RDR++++ + A++ ++ Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240 Query: 128 ASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM-I 183 SA+ ++G + V+ L + P Y+ + +P+G LL +A ++G I V R++ + Sbjct: 241 LSAFGMVLGGI-IAVAFLTWL-EPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298 Query: 184 NF 185 N+ Sbjct: 299 NY 300 >gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50] gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 281 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R + Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42] gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 321 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314 Query: 181 LMINFDV 187 M+ V Sbjct: 315 SMMKVSV 321 >gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H+I+ R K + P+ LD++ SV+AGL + A+ +V + P+ EFRR++ Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G++ S+ M R +Q+V F + +LG ++S+ L + +RD + +A+ Q Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145 A+ KA +I L FC+ ++ Sbjct: 273 AM----KAPVKMIFPLVFCIFPAIF 293 >gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 287 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1] gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1] Length = 302 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 88/178 (49%) Query: 9 TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 T + ++D P +D + + + G + A+A + SS V + I LG L E+ Sbjct: 124 TEQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEA 183 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 + ++ + L E+S ++ I V + GG L+ L+N++ ++R+R + ++ A + E + Sbjct: 184 LQQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRV 243 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 SA ++ +P ++ ++ Y++ ++ RG L VA A LIG M + D Sbjct: 244 SAKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301 >gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 301 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KK+ +F + L ++ R+V AGL V A+ + + + EF + + LG+SL Sbjct: 118 KKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGISL 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +FS + + GG L E L NLSR + D + M KV++++ E Sbjct: 178 RQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAE 237 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + +A + LP + +V + +L+ G +L AA + G Sbjct: 238 PRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFG 287 >gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 312 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 67/124 (54%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + +AGL + A+ + V + DP R E RRV + LG SL Sbjct: 132 KRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLALGRSLD 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L + Sbjct: 192 DALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQV 251 Query: 127 KASA 130 K +A Sbjct: 252 KVTA 255 >gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 287 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280 Query: 181 LMINFDV 187 M+ V Sbjct: 281 SMMKVSV 287 >gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1] Length = 338 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R K + P+ LD +VR V G V A +G + P+R +V G+ Sbjct: 157 ISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVE 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 217 IDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAMSA 276 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V + V T+P Y + + G ++L VA ++G Sbjct: 277 ETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLG 327 >gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or proteinsecretion [Moritella sp. PE36] Length = 305 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 2/177 (1%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L ++ +F + FP AL+++ +V +G + A+ + VG + D V EF+ + + LG Sbjct: 122 LQRREKKQFEEAFPEALNMLTSAVSSGESIMHAI-IFVGTALDGEVGKEFKLMGDRLRLG 180 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + P FF + + GG L E + L+R++ D + ++ K AL Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + EA+ASA I+G++PF L+ + SP ++ P G +L IGI ++ Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISII 297 >gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium leguminosarum bv. viciae 3841] Length = 318 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ +++R + P A+D IV +VR G P++ AV + P EF R+ Q Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+ L E++ R R +P + + ++ GG++SE L +S+ ++ + K+ Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 S +A+ + ++ + +++F P ++ + + G ++ V A G MR Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311 Query: 181 LMINFDV 187 M+ V Sbjct: 312 SMMKVSV 318 >gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille] Length = 311 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K + P LD +VR G + A V + +P+R R G+ L Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + R LQE+ + VI V + GG L ++ +RDR+ + ++ ALS E Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SAWI+G LP + + + ++ DP G LL A IG Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIG 300 >gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio splendidus 12B01] Length = 304 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + +F N L +I R+V AGL V A+ + + EF + + LGLSL Sbjct: 120 KMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLGLSL 179 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +S+ +P +FS + + GG L + L +LSR + D + M+ KV++L+ E Sbjct: 180 RQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSE 239 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + +A + LP + +Y P + L N G +L A Sbjct: 240 PRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYA 282 >gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J] gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D] gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J] gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K + L P LD +VR + G V A + P+R+ + + Q G L Sbjct: 128 RKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + R + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+ RL Sbjct: 248 TRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304 >gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC 17616] gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 330 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLRTGVE 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 209 IDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + NDP G MLL A L G Sbjct: 269 ETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAG 319 >gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546] Length = 302 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 RQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L + L +LSR L D + M+ KV++L+ E Sbjct: 179 KHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + +V + +P VLI G +L A ++IG + ++LM Sbjct: 239 PRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLM 295 >gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 275 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 83/169 (49%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R P+ L +I +RAG A+ V +S P+ EF ++ LG+ L Sbjct: 95 RRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIRLGIDLD 154 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + +P+ + + + + ++GGNL++AL +++ LRD+ M+ K++AL+ + Sbjct: 155 VAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQG 214 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ LP + ++ P M L P G L V AA L+G Sbjct: 215 RMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLG 263 >gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068] gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068] Length = 289 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 92/177 (51%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +L ++AK +A+D+++ ++ AG V+ A+A + +SS P++ + ++ LG Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + +PL+ FS+ ++V ++GG+L+ LA+ R +RDR + ++Q+ Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +++ S I L + ++ +V+ SP M +N G ++ + +GI+ M Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWM 281 >gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E] Length = 293 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ +F + FP + I+ + +G + A+ S + EF + H L++ Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAI----HKRLAI 167 Query: 66 SESISRMV-----RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E + + RY P +E FF T+I V GG + E + L R++ D K M+ K Sbjct: 168 GEDANSVFEDSYSRY-PYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKS 226 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A++ EA+ SA I+ S P + F P L+NDP G M+L Sbjct: 227 AMTSEARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMIL 271 >gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1] gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1] Length = 320 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 79/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + L P LD +VR + G A + + DP+ ++ L Sbjct: 141 KRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSASPDLG 200 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ ++ R L E + V + + GG L +S +RDR++ + ++ ALS E Sbjct: 201 QAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEI 260 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAW++ LP V L+ + GY + ND G ++ VAAA +G ++ Sbjct: 261 RMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLL 313 >gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22] gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei 87.22] Length = 341 Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 90/182 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 160 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLALGRSV 219 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L DRK + +V+ + E Sbjct: 220 DDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSE 279 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L L+ ++ G + + P G +L+ ++ +G V+R + Sbjct: 280 VNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIRRLGKI 339 Query: 186 DV 187 +V Sbjct: 340 EV 341 >gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304 >gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain protein [Slackia exigua ATCC 700122] Length = 335 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P+AL + AGL V A A + ++ P+R F V LG S+ E++ R R Sbjct: 164 PDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELGRSVDEALERFRRAS 223 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 L E+SF + + VQ GG+ S + + + ++ ++ + +AK SA ++ + Sbjct: 224 SLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQTAQAKLSAQVVSIM 283 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + ++ PG+M+ G LL AAA + GI ++ +++ D+ Sbjct: 284 PIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRVLDVDI 334 >gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911] Length = 308 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/181 (19%), Positives = 96/181 (53%), Gaps = 1/181 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 K T + + A ++ + ++G+ ++ + V+ + + P R EF+ + + LGL Sbjct: 129 KYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGLDFE 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ M + + +E F + + +Q + GGNL++ L +++ L +RK ++ ++ + E Sbjct: 189 RALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATAEQ 248 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + ++I+ ++P + ++ G+++++ P G +L+ + M + ++++R + N Sbjct: 249 RFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVTNIK 307 Query: 187 V 187 V Sbjct: 308 V 308 >gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70] Length = 291 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS----LSESISR 71 FP + I+ + G + ++ + + EF+ + + LG +S SR Sbjct: 120 FPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPMSVFEDSYSR 179 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T+I GG + E + L R++ D K M+ K +A++ EA+ SA+ Sbjct: 180 Y----PYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEARMSAF 235 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVAAAFMLIGIMVMR 180 I+ S P + F P + L+NDP G + + G A MLI +MR Sbjct: 236 IVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288 >gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415] Length = 295 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 AMAVFHDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5] gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5] Length = 224 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + + P+ LD IVR V G V A + + +P+RS V G+ Sbjct: 43 IQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLRGGVE 102 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 103 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 162 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y++ + NDP G LL VA L G Sbjct: 163 ETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGG 213 >gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 282 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 92/182 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R A P+ L + ++RAG + A+ +V ++ P+ E ++ LG+ L Sbjct: 101 KRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGIDL 160 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + R +P+ + + +++ ++GGNL+EAL +++R L + M+ K++AL+ + Sbjct: 161 DIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALTSQ 220 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ LP + ++ F P M L ++ G + L V A +G + + N Sbjct: 221 GRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKITNI 280 Query: 186 DV 187 DV Sbjct: 281 DV 282 >gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145] Length = 281 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 89/185 (48%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 + + KR P L + +++G+ + +AV + + P+ E +I L Sbjct: 95 RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L +++ R +P+ ++ +++ + GG S+ L L+ L ++ ++ + QA Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181 LS + + AW++ +P + L+ + P + L N G + LGVA LIG M+++ Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274 Query: 182 MINFD 186 ++N D Sbjct: 275 ILNTD 279 >gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383] Length = 326 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVE 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD ++ + ++ A+S Sbjct: 205 IDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ +P V + V TSP Y + ND G L+ +A A +G Sbjct: 265 ETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMG 315 >gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1 [Achromobacter xylosoxidans A8] Length = 281 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 81/148 (54%) Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 +V QS P+ EF ++ Q +G+ ++ + MP + + + +Q GGNL+ Sbjct: 134 VVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGGNLA 193 Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 EAL ++++ LR R ++AK+ AL+ + + AWI+GSLP + ++ P M +L + P Sbjct: 194 EALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLWHTP 253 Query: 160 RGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G +L + A G++++R ++ D+ Sbjct: 254 VGWGVLTIVAVLETTGMLLIRRIVRIDI 281 >gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces brasiliensis DSM 5305] Length = 286 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 76/158 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + L P +D + R+ R G + + ++ + P+ E R + +G++++ Sbjct: 104 RRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQMGVTMN 163 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + + + +T +SV Q GG+L L L+R LRDR +++A++ + Sbjct: 164 EALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLRAITAGS 223 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 +A+A ++ LP + F P Y+ L+ G + Sbjct: 224 RATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFI 261 >gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 257 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 13/183 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRV 55 +I++R F +AL + +V+AG V AV V G+ +D V EFR + Sbjct: 67 RMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIV-EEFRYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 QH+ + L E + ++++ F++V + GG+++ + +SR+L D+ ++ Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----AAA 170 K +++A K+ I+ +P + + TSPG+++VL +P G + + AAA Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245 Query: 171 FML 173 + L Sbjct: 246 YWL 248 >gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 290 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%) Query: 12 FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 F D FP L ++ +V AG + A+ + F R+ +LG + Sbjct: 115 FEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERVFND 174 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 +E FF V+ V Q GG L + LSRI+ + KNM + A++ EA+ SA Sbjct: 175 AWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAK 234 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ SLP + + SP + +++DP G ++L A IG++++ +++ Sbjct: 235 IVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILL 286 >gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA2] gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes HL044PA1] gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes HL037PA3] gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein [Propionibacterium sp. P08] Length = 307 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 92/177 (51%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++RTAKF++ P ++ + AGL + A+A++ + +P RSEF +V G SL Sbjct: 126 QRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLRFGASL 185 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++ +EV+ + + V ++ GG+L AL ++ L +RK + +V + + Sbjct: 186 QTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVTTILSQ 245 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A+A++I + + + PG + ++ + G + L + +G +V+R M Sbjct: 246 SLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIRQM 302 >gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74] Length = 314 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 88/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSVD 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T +++ ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 194 EALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3] Length = 329 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R K + P+ LD +VR V G V A +G + P+R +V G+ Sbjct: 148 ISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTGVE 207 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + ++E +V+ + + GG L +S +RD + + +++A+S Sbjct: 208 IDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSA 267 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G LP V + V T+P Y + + G ++L VA IG Sbjct: 268 ETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIG 318 >gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 199 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 9/186 (4%) Query: 3 HLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57 L ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ Sbjct: 14 KLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLAR 73 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + + +S SR P +E FF ++I GG + E ++ L R + D M+ Sbjct: 74 GEDVMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQ 129 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177 K +A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ Sbjct: 130 KKKAMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMF 189 Query: 178 VMRLMI 183 ++ ++ Sbjct: 190 IIWWLM 195 >gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15] Length = 308 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 81/174 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +++ Sbjct: 248 TRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLIL 301 >gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20] gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 295 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 6 KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K F + FP + ++ + +G+ + A+ + P+ EF +R+ + Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 + +S SR P +E FF ++I GG + E ++ L R + D M+ K + Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ SA I+ P + T+P + ++NDP G ++L L+G+ ++ Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91] Length = 206 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 25 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 84 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 85 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 144 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 145 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 195 >gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576] Length = 237 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 56 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 115 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 116 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 175 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 176 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 226 >gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243] Length = 296 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 1/172 (0%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 KF + A+ +I ++RAG V+ A+ + SDP++SEFRR+ G + E++ Sbjct: 120 KFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDIRAGTPVPEALD 179 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +++ F+T + + Q GG+L++ N+ + +R R + +++ + + + Sbjct: 180 KVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIES 239 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 I+ LP + + SP + + P G L+ +A + ++MR M Sbjct: 240 QIMVGLPVFMMAALLAISPSHRE-FYSQPSGWALIALAVVLDTLAYLMMRKM 290 >gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112] Length = 211 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 30 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 89 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 90 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 149 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 150 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 200 >gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07] gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07] Length = 308 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304 >gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894] Length = 215 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 34 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 93 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 94 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 153 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 154 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 204 >gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210] Length = 216 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 35 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 94 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 95 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 154 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 155 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 205 >gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 312 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 84/169 (49%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F++ P ++ + +AGL + A+ + V + +P + E RRV + +G SL Sbjct: 132 KRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLAVGHSLD 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++++ +V +P +E++ + + + ++ GG + +L NL+ L +RK + +V L + Sbjct: 192 DALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K +A + L ++ G ++ + G + + VAA G Sbjct: 252 KVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAG 300 >gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 220 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 39 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 98 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 99 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 158 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 159 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 209 >gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 326 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 77/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V + G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGVE 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + D G L+ +A A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIG 315 >gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786] Length = 268 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 78/163 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+ LD IVR V G V A + + P+R V G+ + Sbjct: 88 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 147 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E Sbjct: 148 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 207 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + SAW++G+LP + + V T+P Y + + DP G L+ +A Sbjct: 208 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLA 250 >gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis MSMB43] Length = 221 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 40 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 99 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 100 IDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 159 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 160 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 206 >gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrionales bacterium SWAT-3] Length = 302 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 81/174 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K + +F + L +I R+V AGL V A+ + + EF + + LGLSL Sbjct: 118 KLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALGLSL 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P +FS + + GG L + L LSR + D + M+ KV++L+ E Sbjct: 178 RDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSLTSE 237 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + +A + LP + + + P + LIN G +L + + G +++ Sbjct: 238 PRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLIL 291 >gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147] Length = 258 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 2/168 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + + P+ LD IVR V G V A + + P+R V G+ + Sbjct: 78 QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 137 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S E Sbjct: 138 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 197 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 198 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQL--VYLAFIL 243 >gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6] gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6] Length = 330 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + QE +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 209 IDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 268 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + DP G MLL +A + G Sbjct: 269 ETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAG 319 >gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215] Length = 256 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 75 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 134 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 135 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 194 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 195 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 245 >gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191] gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191] Length = 535 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 96/182 (52%), Gaps = 1/182 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+L ++R K + ++L ++ S++AG+ + A ++ P+ EF VI+ Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG S +++ M + + +S+ I +Q Q+GGNL++ + +R+ ++ K+Q Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI-MVM 179 A++ + + + ++G +P+ + ++++ P M G ++L ++L+G+ MV Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528 Query: 180 RL 181 +L Sbjct: 529 KL 530 >gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599] gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 306 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 74/132 (56%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81 ++ S+RAGL +S ++++ + + P EF R+ LG+S ++S M + +P +E Sbjct: 142 LLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGVSFDRALSDMEKRIPTREF 201 Query: 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141 F+ + +Q + GGNLS+ L ++ L DR+ + +++ ++ E + + ++ +P + Sbjct: 202 RIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMTAEQRYVSILVPIMPVALV 261 Query: 142 TLVYFTSPGYMN 153 ++ + G+++ Sbjct: 262 LMMNTMNKGFID 273 >gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] Length = 316 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 135 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 194 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 195 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 254 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 255 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 305 >gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4] Length = 242 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 61 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 120 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 121 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 180 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 181 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 227 >gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 326 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + ND G L+ +A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIG 315 >gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] Length = 264 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 83 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 142 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 143 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 202 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 203 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 253 >gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 326 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 76/171 (44%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K + P+ LD IVR V G V A + + P+R V G+ Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E V+ + + GG L +S +RD + + ++ A+S Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP V + V TSP Y + ND G L+ +A IG Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIG 315 >gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1] gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1] Length = 317 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 1/178 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + L P+ LD +VR + G A + V P+ ++ + Sbjct: 136 LSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLRASPD 195 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 L ++ + R L E + V + ++ GG + L +S +RDR++ + ++ ALS Sbjct: 196 LGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELHALSA 255 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-MLLGVAAAFMLIGIMVMRL 181 E + SAWI+ LP V L+ + GY + D G M+LG A L + RL Sbjct: 256 EVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLYRL 313 >gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC 10229] gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20] gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU] gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1] gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229] gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247] gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU] gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399] gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4] gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20] Length = 306 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 125 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 184 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 185 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 244 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 245 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 295 >gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum IAM 14863] Length = 299 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 2/172 (1%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P L ++ +RAG + AV +V Q+ P+R EF RV L + +++ + Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132 + L E + V + GG+L L ++SR ++ DR+ ++A ++A E KASA + Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRA-MEAACAEGKASARL 243 Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + ++P V LV + +P Y + DP G +LL + M +G +++R + + Sbjct: 244 VTAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITD 295 >gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH] Length = 261 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 80 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 140 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 199 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 200 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 246 >gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891] Length = 302 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 KQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L E L +LSR L D + M+ KV++L+ E Sbjct: 179 RYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLTSE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + +V + +P +LI G +L A +++G + +++M Sbjct: 239 PRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVM 295 >gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972] Length = 292 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/172 (20%), Positives = 91/172 (52%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 + + P+ ++ + R ++ GL ++ AV ++ P++ +RVI + +G+ L ++ Sbjct: 117 QLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDAFE 176 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + ++ S+ ++ GG+++++L +L ++LR + + ++++++ E + +A Sbjct: 177 KESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRITA 236 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 W+IGS P VS + +P + + G L + + L+GI+++ M Sbjct: 237 WVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288 >gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 335 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324 >gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia pseudomallei 1710b] gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 335 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324 >gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4] gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4] Length = 324 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 78/164 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + +P+R V G+ Sbjct: 143 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLRSGVE 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 203 IDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 262 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 E + SA+++ LP + + V T+P Y+ + NDP G LL +A Sbjct: 263 ETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLA 306 >gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264] gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 336 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++G+LP + + V T+P Y + + DP G L V AF+L Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 321 >gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia mollaretii ATCC 43969] Length = 279 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 78/178 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K F D P + +I + +G ++ + + S P+ E + +LG S Sbjct: 98 KTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLNLGESP 157 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + + E F T+I + Q GG L E ++ LS+++ K + K ++ + Sbjct: 158 EAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQ 217 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II +P STL+YF P M + N P G M+ +IGI ++R M+ Sbjct: 218 TRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIRTML 275 >gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ +F L +I R+V AGL V A++ + + EF R+ + LG + Sbjct: 119 KQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALGHGM 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ +P + +F+ + + GG L E L +LSR L + + M+ KV++L+ E Sbjct: 179 RYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSLTSE 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A + LP + TLV + +P +LI G +L A +L+G + + LM Sbjct: 239 PRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295 >gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 329 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 148 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 207 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 208 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 267 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++G+LP + + V T+P Y + + DP G L+ +A + G Sbjct: 268 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 318 >gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 2/181 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGL 63 KK F + + AL + S+RAG+ + AV + ++ EFR++ LG Sbjct: 106 KKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSDIQLGF 165 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S+SE+ M +P +V + I +QS +GG+ +E++ ++ + R ++ +++ L Sbjct: 166 SISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLF 225 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 K + + LP + +Y++SP Y L + G ++ +A M+IG + R + Sbjct: 226 ASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYIDRKFL 285 Query: 184 N 184 N Sbjct: 286 N 286 >gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 146 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 205 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 206 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 265 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++ LP + + V T+P Y+ + ND G LL AFML Sbjct: 266 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 312 >gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49] Length = 257 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 76 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 135 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 136 IDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 195 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + ND G +LL A L G Sbjct: 196 ETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAG 246 >gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD] gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD] Length = 322 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ LD IVR V G V A + + P+R V G+ Sbjct: 141 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + +E +V+ + + GG L +S +RD + + +++A+S Sbjct: 201 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 260 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 E + SAW++ LP + + V T+P Y+ + ND G LL AFML Sbjct: 261 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 307 >gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC BAA-2122] Length = 304 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/178 (22%), Positives = 89/178 (50%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K++ ++ F+++FP+AL+I+ ++ +G + A + Q ++ V EF+ + E + Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + + R P E FF + I + GG L + + ++R++ + ++++ K + Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 L+ E++ SA I+G LP ++ F SP + ++ G + IG ++ Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFII 296 >gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 404 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 78/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 224 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLRSGVEID 283 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD + + ++ A+S E Sbjct: 284 RALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 343 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 344 RLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 396 >gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M] gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M] Length = 356 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 78/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 176 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLRSGVEID 235 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD + + ++ A+S E Sbjct: 236 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 295 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 296 RLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 348 >gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 386 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 79/173 (45%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD IVR + G V A + + P+R V G+ + Sbjct: 206 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRSGVEID 265 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++S + +E+ V+ + + GG L +S +RD ++ + ++ A+S E Sbjct: 266 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVAMSSET 325 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S+W++G LP + + T+P Y + DP G +L +A A L G ++ Sbjct: 326 RLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLL 378 >gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074] gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 311 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 87/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F++ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 130 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLALGRSV 189 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + +P +E+ T + + +Q GG + +L NL+ L +RK + +V+ + E Sbjct: 190 DAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVRTMLSE 249 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A + +L L+ + G + + G +L+ +A +G +V+R + Sbjct: 250 VHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIRRLGKI 309 Query: 186 DV 187 +V Sbjct: 310 EV 311 >gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78] gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78] Length = 242 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 62 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 121 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 122 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 181 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 182 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 241 Query: 187 V 187 V Sbjct: 242 V 242 >gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 342 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 84/181 (46%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 160 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 219 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ + ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 220 IDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSS 279 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A ++G ++ + N Sbjct: 280 ETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLYRLAN 339 Query: 185 F 185 Sbjct: 340 L 340 >gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC BAA-450] Length = 306 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M L + F + FP+AL ++ +V AG + + + VG++ D PV EF+++ + Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSF-IFVGRTLDGPVGKEFKKMGDRL 178 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G S + S+ + P FF + GG + E +A L+R++ + ++ K Sbjct: 179 QMGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKK 238 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 AL+ EA+ SA I+G+LPF L+ + SP ++ P G +L IG+ ++ Sbjct: 239 YALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLI 298 Query: 180 RLMIN 184 L++ Sbjct: 299 WLLMK 303 >gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 356 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 174 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 233 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 234 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 293 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N Sbjct: 294 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 353 Query: 185 F 185 Sbjct: 354 L 354 >gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG] gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF] gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length = 314 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR F+ P+ ++ + AGL + A+A+ + +P E V + LG S+ Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ + R +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + E Sbjct: 194 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + +L LV + G ++ + G L+ ++ +G V+R + D Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184] gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184] Length = 204 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R K + P+ LD IVR V G V A + + +P+R V G+ Sbjct: 23 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLRGGIE 82 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 83 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 142 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SA+++ LP + + V T+P Y+ + DP G LL +A ++G Sbjct: 143 ETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVG 193 >gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein [Burkholderia xenovorans LB400] Length = 359 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 83/181 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 + KR + + P LD IVR + G V A + + P+R V G+ Sbjct: 177 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 236 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++S++ ++E+ V+ + + GG L ++ +RD ++ + ++ A+S Sbjct: 237 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 296 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 E + S+W++ LP + + ++P Y + DP G L+ +A A L G ++ + N Sbjct: 297 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 356 Query: 185 F 185 Sbjct: 357 L 357 >gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM 3776] Length = 285 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 88/185 (47%), Gaps = 5/185 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + ++ R + L P L+ + R+ G V + ++ + P+ E + + Sbjct: 97 LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+ + ++++ + L + F + V Q GG+L L LS+ +RDR +++ Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHMLLGVAAAFMLIG-IM 177 A++ ++A+A ++ LP V L++FT P Y + L+ G +A +IG I Sbjct: 217 AMTAASRATALLMVVLPPGV--LIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIW 274 Query: 178 VMRLM 182 V+R++ Sbjct: 275 VLRIL 279 >gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700] gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700] Length = 294 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S SR Sbjct: 123 FPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPMAVFEDSYSR 182 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 183 Y----PYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEARMSAM 238 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ LP + F P LINDP G +L L G+ ++ ++ Sbjct: 239 IVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLM 290 >gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680] gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 313 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 88/182 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR F+ P+ ++ + AGL + A+A+ + P E RV + LG S+ Sbjct: 132 QKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLTLGRSV 191 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG++ +L NL++ L DRK + +V+ + E Sbjct: 192 DDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 251 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 A+A+ + L L+ ++ G + + G L+ ++ +G V+R + Sbjct: 252 VNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIRRLGKI 311 Query: 186 DV 187 +V Sbjct: 312 EV 313 >gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena DSM 20109] Length = 306 Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 90/181 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R F+ P ++ + AGL ++ A+A+ + P E RV G L Sbjct: 125 QRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMRFGEDL 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +I + +P +EV+ ++ + V ++ GG+L AL +++ L +RK ++ +V+ + + Sbjct: 185 DTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVRTVLAQ 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 + ++ +++ + F + L+ PG + + D G L V ++ + G +++R M F Sbjct: 245 STSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIRRMTRF 304 Query: 186 D 186 D Sbjct: 305 D 305 >gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1] Length = 294 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 86/179 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R P ++ I+RS++AG +S AVA + PV +RV +G SL Sbjct: 114 QRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMGASL 173 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 S+++ + + + + + + GG+ + + + +LR R+ + +++A++ E Sbjct: 174 SDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAMTGE 233 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + SA ++ LP V +P Y ++ G LLG A A+ ++GI ++ M+ Sbjct: 234 TRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRMVK 292 >gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 307 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 73/169 (43%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + D P LD +VR + G ++ A +S+P+R + L Sbjct: 128 RRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQELD 187 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + R +E+ + V+ V + GG L ++ +RD + ++ A S E Sbjct: 188 AALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEI 247 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + SAW++ +P ++ + T+ + +DP G +L A L G Sbjct: 248 RLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAG 296 >gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C] gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C] Length = 312 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 87/181 (48%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +RT +F++ P I+ + +AGL + A+ + + P E RV + +G S+ Sbjct: 132 RRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLAVGHSIE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ +V +P +E+ + + + ++ GG + +L NL+ L RK + +++ + Sbjct: 192 EALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+++ ++ LV PG ++ + G + +A +G +++R + D Sbjct: 252 TVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIRRLSKID 311 Query: 187 V 187 V Sbjct: 312 V 312 >gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 65/127 (51%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +++ + R A FP+ LD++ SV AGL A+A +V +S PV EFRRV++ Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + E++ + +V F+ I QLG N+ + L S +R ++ + + Q Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267 Query: 121 ALSMEAK 127 A+ + K Sbjct: 268 AMKVPVK 274 >gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I] gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS] Length = 281 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822] gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis] Length = 281 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P AL + ++RAG ++ A+ +V P+ EF ++ Q +G+S +++R+ R Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 + ++ + + V + GGNL+E L +++ + R ++ +V+AL + + AWI+G+L Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187 P + ++ P M L H L G AA +++ GI ++R ++ DV Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281 >gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans] gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 318 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%) Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80 ++ ++RAG+ + A+ + + +P RSEFR+ LG +L ++ M R + ++ Sbjct: 154 QLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLALHDMRRRVCSRD 213 Query: 81 VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140 + I VQ Q GGNL L ++ L +R+ ++ ++ +L+ EA+ SA ++ LP Sbjct: 214 LDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSALVVMVLPIFF 273 Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAA 169 ++ T G L G +LLGV A Sbjct: 274 LLMIRDTPLG--EALFQTVIGWVLLGVFA 300 >gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans] gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans] Length = 295 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71 FP + I+ + +G + A+ + GQ + +S +R+ + +S R Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 P +E FF T++ GG + E ++ L R++ D M+ K +A++ EA+ SA Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 I+ P + F P + LINDP G +L L G+ ++ ++ Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291 >gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM 3043] Length = 291 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 84/170 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L+ +R + G A + +S+ P+R+ RV + LGL L E + R + Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L E++ +T + V + GG+L + L + +LR ++ + +++AL+ E + +A ++ Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 +P + + T+P +++ + + G L +A L G VM M+ Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289 >gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein secretion [Vibrio fischeri ES114] Length = 305 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 85/176 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +K +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 122 LQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E + P FF + GG L + ++ L+R++ D + ++ K AL+ Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ SA I+ + PF ++ F SP ++ G +L IG++++ Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLII 297 >gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia kristensenii ATCC 33638] Length = 284 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+ F DFP AL +I + +G ++ + + S P+ +EF + ++G S Sbjct: 103 KRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLNVGESP 162 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+ + Q GG L E + LS ++ K + K ++ + Sbjct: 163 EAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAVMTAQ 222 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II +P S L+YF P + + + P G M+ ++GI+++R M+ Sbjct: 223 VRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIRKML 280 >gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans] gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 295 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 40 IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 + GQ +S RR+ + +S R P +E FF T+I GG + Sbjct: 152 LTGQLGQEFKSIHRRLSIGEDPATVFDDSYDRY----PYKEFYFFITIIRNNLNKGGQIR 207 Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 E ++ L R++ D M+ K +A++ EA+ SA I+ P + F P + L+NDP Sbjct: 208 EVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACFPVGFFFFMQFAMPENFDFLVNDP 267 Query: 160 RGHMLLGVAAAFMLIGIMVMRLMI 183 G +L L G+ ++ ++ Sbjct: 268 TGRYVLYYVFGSELFGMGIIWWLM 291 >gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 308 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Query: 4 LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 LI RT K L P LD +VR + G V A + P+R+ + + Q Sbjct: 122 LIWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQ 181 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G L ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ Sbjct: 182 RAGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQREL 241 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMV 178 ALS E + SAWIIG LP V ++ + Y+ + DP G L+ A ++G +M+ Sbjct: 242 FALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVML 301 Query: 179 MRL 181 RL Sbjct: 302 ARL 304 >gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia frederiksenii ATCC 33641] Length = 187 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 78/178 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+ + F DFP L +I + +G ++ + + S P+ E + +LG S Sbjct: 6 KRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLNLGESP 65 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L E + LS+++ K + K L+ + Sbjct: 66 ETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKSVLTAQ 125 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S II ++P S L+YF + + ++P G M+ IGI V+R M+ Sbjct: 126 TRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIRKML 183 >gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11] Length = 305 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L ++ +F + FP+AL+++ +V AG ++ A+A + + V EF+ + E LG Sbjct: 122 LQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S E + P FF + GG L + ++ L+R++ D + ++ K AL+ Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 EA+ SA I+ + PF ++ F SP ++ G +L IG++++ Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLII 297 >gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50] gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 308 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P LD +VR + G V+ A +G P+ +R G L Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ ALS E Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248 Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 287 >gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp. palearctica Y11] Length = 293 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S R E F T+I + Q GG L E + LS ++ K + K + Sbjct: 169 ESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288 Query: 183 I 183 + Sbjct: 289 L 289 >gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 322 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu] Length = 261 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 80 IHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGVE 139 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + + +E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 140 IDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMSS 199 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 E + SAW++ LP + V T+P Y++ + ND G L +A + G Sbjct: 200 ETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAG 250 >gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 314 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + AGL + A+ + + P E V +G+ + Sbjct: 133 QKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLAVGVPM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ M + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 EDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A A +G +++R M Sbjct: 253 VNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIRRMSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA] Length = 322 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 83/187 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + KR + P+AL + +AGL + + + P+ + F R Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G ++ + R + E++F + + VQ Q GG++ + L ++ ++ ++ Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 + +AK SA ++ LPF + + S G+++ P G LL +A GI+ +R Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314 Query: 181 LMINFDV 187 M+ +V Sbjct: 315 RMLAVEV 321 >gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14] gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14] Length = 313 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + AV + + P E +V LG S+ Sbjct: 132 QKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLALGASM 191 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 192 DDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 251 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + VA A +G +++R + Sbjct: 252 VNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIRRLSRI 311 Query: 186 DV 187 DV Sbjct: 312 DV 313 >gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum UW551] Length = 308 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 128 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 187 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 188 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 304 >gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 311 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/181 (20%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + AGL + ++A+ + P E R V + +G +L Sbjct: 131 KRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLGVGRTLD 190 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P +E+ + + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 191 DALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVRTQLSQI 250 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 A+A+ + ++ LV PG ++ + G + + V+ +G + +R + D Sbjct: 251 NATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIRRVSKID 310 Query: 187 V 187 + Sbjct: 311 I 311 >gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641] Length = 321 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 92/182 (50%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H I++R + P+A+ I + AGL + + +S P++ F RV + G Sbjct: 136 HAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAAG 195 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L E+++ + ++E++F +T + +Q Q GG++ + L +L N++ + Sbjct: 196 SPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVN 255 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + +A+ SA ++ ++ ++ ++ S G++ + G ++L VA + + GIM +R + Sbjct: 256 TAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRKI 315 Query: 183 IN 184 ++ Sbjct: 316 LS 317 >gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609] Length = 319 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 139 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 198 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 199 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 258 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 259 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 315 >gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I] gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS] Length = 306 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 HL +K + + P LD +VR + G V+ A +G P+ +R Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 LS E + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285 >gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 314 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT +F++ P I+ + +AGL + ++++ + DP E RV +G L Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLAVGEPLE 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+ + L+ PG ++ + G + + V+ IG +V+R D Sbjct: 254 TVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIRRFSRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822] gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis] Length = 306 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 HL +K + + P LD +VR + G V+ A +G P+ +R Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G L ++ ++ R L+E+ S VI++ + GG + L ++ +RD + + ++ A Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165 LS E + SAWI+ LP ++ ++ F + +M + +DP G LL Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285 >gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957] gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957] Length = 318 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++ + + P LD +VR + G V A + P+R+ + Q G L Sbjct: 138 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 197 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ + + + E+ S+V+ + + GG + + +RDR+ + ++ ALS E Sbjct: 198 DAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 257 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181 + SAWI+G LP V ++ + Y+ + DP G ML+ A ++G +M+ RL Sbjct: 258 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARL 314 >gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa] Length = 194 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 3 HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 H+++ RT + P+A+D+I R++RAG + A+ ++ + P+ EFR E Sbjct: 69 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 128 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 + G++L E+++ + +P+ ++ +F + +Q + GGNL+E L + Sbjct: 129 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIG 175 >gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 316 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + A A +G +++R + Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314 Query: 186 DV 187 DV Sbjct: 315 DV 316 >gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei ATCC 43380] Length = 272 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 68/158 (43%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KK + F DFP L +I + +G ++ + + + P+ SE R + +LG S Sbjct: 91 KKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLNLGESP 150 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L + LS+I+ K + K ++ E Sbjct: 151 ESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAE 210 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 + S II +P S L+YF + + N P G + Sbjct: 211 TRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKL 248 >gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 223 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 39 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 98 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 99 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 158 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 159 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 218 Query: 183 I 183 + Sbjct: 219 L 219 >gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24] gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24] gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24] Length = 316 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + A A +G +++R + Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314 Query: 186 DV 187 DV Sbjct: 315 DV 316 >gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703] Length = 293 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 169 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ + +IG++V+R M Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288 Query: 183 I 183 + Sbjct: 289 L 289 >gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 85/174 (48%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + P +D ++R+V AG + A+ S P+ +V LG + Sbjct: 125 QRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIKLGGEI 184 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++S +R L+E+ + I V + G ++ E L +L +++ + + + +AL+ E Sbjct: 185 DTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFRALTGE 244 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 ++ +AW++G +P + + T+P Y L +DP G +L +A G++ + Sbjct: 245 SRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLAL 298 >gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 312 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 86/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + A+++ + P E +V +G S+ Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLAVGHSV 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ + L+ SPG ++ + G + A A IG ++R M Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836] gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836] Length = 286 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 5/181 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +KR A+F + +P+ +D I +VRAGL +S+A+A + + P+R FRR Sbjct: 95 LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154 Query: 61 LGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +ES+ R+ + P+ + + I+ + GG+L L +LS LRD +++ Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVG-GGDLGRLLRSLSSFLRDDARTRSE 213 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 +++ + A + + P+ V L+ F G + N P G +++G+ AA ++ V Sbjct: 214 LESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRV 271 Query: 179 M 179 M Sbjct: 272 M 272 >gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 314 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 85/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT +F++ P I+ + +AGL + ++++ + +P E RV +G L Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLAVGEPLE 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++S + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+ + L+ PG ++ + G + VA IG +V+R + D Sbjct: 254 TVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIRRLSRID 313 Query: 187 V 187 V Sbjct: 314 V 314 >gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia intermedia ATCC 29909] Length = 293 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 76/178 (42%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K F DFP L +I + +G ++ + + P+ E + ++G S Sbjct: 112 KNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESP 171 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + E F T+I + Q GG L E + LS+++ K + K ++ + Sbjct: 172 ETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQ 231 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + S I+ +PF S +YF P + + N P G ++ + +IGI ++R M+ Sbjct: 232 TRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSML 289 >gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174] Length = 247 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 15/186 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54 K LI++R K F +AL+ + +V+AG V +AVA + + +D V+ EF Sbjct: 56 KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVK-EFH- 113 Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 IETQ + + + E + + +++V F+ V + GG+++ + +R+L D+ Sbjct: 114 YIETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKI 173 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +++ +++ KA I+ +P + + TSPG+++VL + L G+ A + Sbjct: 174 DVRKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGN-----LFGMCAMTLC 228 Query: 174 IGIMVM 179 +GI V+ Sbjct: 229 LGIYVL 234 >gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis BCW-1] Length = 312 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 87/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF+ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 131 QKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLAVGHSI 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ + Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ + L+ + G ++ + + G + VA A +G ++R M Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 1/181 (0%) Query: 4 LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 L +KR +F +FP +L +I + +G ++ + + S P+ EF V ++G Sbjct: 96 LSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNVG 155 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 S + E F T+I + Q GG L E + LS ++ K + K + Sbjct: 156 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 215 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + + + S II +P S L+YF P + + + P G ++ LIG++V+R M Sbjct: 216 TAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRKM 275 Query: 183 I 183 + Sbjct: 276 L 276 >gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM 20476] Length = 332 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 H + + + P+AL + +AGL + A ++ P+ F +V LG Sbjct: 147 HAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIELG 206 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAK 118 S+ E++ R L E++F + + VQ GG+ + L RI +D + ++ Sbjct: 207 HSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVL----RIAQDSVDHALELRRT 262 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 ++ + +AK SA I+ ++P + ++ SP + N G LL +AA+ + GI++ Sbjct: 263 LRVQTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILI 322 Query: 179 MRLMINFDV 187 +R M+ D+ Sbjct: 323 VRRMLAVDL 331 >gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 313 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 1/176 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R+A L P LD +VR+ R G + A+ + PVR F +++ Q G + Sbjct: 135 RRSAAILA-LPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQSGTPID 193 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + + +QE++ +TV+ + + GG L ++ LR R +A+ ALS E Sbjct: 194 QAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAET 253 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + A I+ + ++ + + Y+ + G MLL ++ G++++ M Sbjct: 254 RLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLNRM 309 >gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1] gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1] Length = 312 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 84/181 (46%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R +F++ P I+ + +AGL + A+ + + P E RV + +G S+ Sbjct: 132 RRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLAIGHSIE 191 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ES+ + +P +E+ + + + ++ GG + +L NL+ L RK + +++ + Sbjct: 192 ESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +A+++ + LV PG ++ + G + VA +G +++R + D Sbjct: 252 TVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIRRLSKID 311 Query: 187 V 187 V Sbjct: 312 V 312 >gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168] gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168] Length = 300 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%) Query: 3 HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +L K+ A+ F F AL+II +V AG + + + S V EF + + Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G + + +E FF + + + GG + E +++L++++ + + M + Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A + E +AS I+ +P + F SP +VL++DP G MLL A L+G+ + Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294 Query: 181 LMIN 184 MIN Sbjct: 295 TMIN 298 >gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 314 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + AV + + P E +V +G S+ Sbjct: 133 QKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G ++ + P G + +A +G +++R + Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio cellulolyticus CD2] Length = 305 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 1/185 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K I KR + LD + AG + A+ + +S DP++S +V Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119 SLSE+ + + +P+ E S ISV S++ N+S +++ ++ + Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 A + E+K +++IIG +P + ++ P Y+ + P G + +A L G+ ++ Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291 Query: 180 RLMIN 184 R + N Sbjct: 292 RRISN 296 >gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium saccharolyticum WM1] Length = 245 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVI 56 L KKR + +F + ++ + AG V +A + VI+ V EF ++ Sbjct: 55 ELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHIV 114 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + S+ +++S L +V F+ V + + GG L +++ + ++RD+ ++ Sbjct: 115 SQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVR 174 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ ++ + I+ +PF + + TSPG+ N++ N G +L+ + A + I Sbjct: 175 QEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGAI 234 Query: 177 MVMRLMINFDV 187 + R ++ ++ Sbjct: 235 AIARHIMKIEI 245 >gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein TadB [Rhodopirellula baltica SH 1] Length = 297 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 68/136 (50%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 ++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++R+ RDR+ + ++++ +++ S + L + V+ +++ P +M + G Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSA 273 Query: 164 LLGVAAAFMLIGIMVM 179 + +GI+ M Sbjct: 274 AIAATIVLQAVGIIWM 289 >gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264] Length = 301 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR + + P+ LD IVR V G V A + + P+R V G+ Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 + ++ + ++E +V+ + + GG L ++ +RD + + ++ A+S Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151 E + SAW++G+LP + + V T+P Y Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKY 301 >gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 84/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+++ + P E +V + +G SL Sbjct: 134 QKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLAVGTSL 193 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL+ L +RK + +V+ + Sbjct: 194 DDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQ 253 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+ + + L+ PG ++ + G + A ++G + +R Sbjct: 254 VSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIRRFSKI 313 Query: 186 DV 187 DV Sbjct: 314 DV 315 >gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] Length = 314 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 133 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A +G +++R + Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 312 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 83/182 (45%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 131 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 191 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G + + P G + +A +G +++R + Sbjct: 251 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N] gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N] Length = 305 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 2/174 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + + P+ +D +VR + G V+ A + DP+ +R G L Sbjct: 126 ERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLD 185 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R LQE+ S+VIS+ + GG L ++ +RD + + ++ ALS E Sbjct: 186 SALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEV 245 Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 + S WI+ LP + ++ F + +M + DP G +L A ++G ++ Sbjct: 246 RMSVWILSLLPIGLGLFIIVFNNDLFMG-MWRDPLGFKMLIGGAMLQVVGTYLL 298 >gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia bercovieri ATCC 43970] Length = 181 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 74/174 (42%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A F DFP + +I + +G ++ + + + P+ E + +LG S Sbjct: 4 AIFHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVF 63 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + E F T+I + Q GG L E LS ++ K + K ++ + + S Sbjct: 64 YDAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMS 123 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 II +P S L+YF P + + N G ++ A LIG+ ++R M+ Sbjct: 124 VNIISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKML 177 >gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437] Length = 315 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/159 (20%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AGL + + ++V + PV+ E RV+ LG L +++ ++ + Q++ F + Sbjct: 158 AGLSIPQGLRLVVQEMPAPVKIELGRVVREIELGRDLEGALNDLLERIHTQDMKVFINAL 217 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148 +Q + GG+L++ ++ ++ + +RK + ++A++ +A+ SA+ + + ++ ++ Sbjct: 218 IIQRRAGGDLAKVMSQMAATMEERKIIHQTIKAVTSQARTSAYALPIISLLIAFMLSKMI 277 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G+ ++ P G ++L + ++G++++R N V Sbjct: 278 DGFYDLFTTLP-GMIVLALFVGLQVLGVVLVRKFSNIRV 315 >gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces violaceusniger Tu 4113] Length = 312 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 86/182 (47%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR +F++ P I+ + +AGL + A+ + + P E +V +G S+ Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLAVGHSI 190 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V+ + Sbjct: 191 DDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +A+++ L L+ + G ++ + + G + VA IG ++R M Sbjct: 251 VTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIRRMSKI 310 Query: 186 DV 187 DV Sbjct: 311 DV 312 >gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 269 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55 K LI ++ + L +F A+ I+ + AG + ++V + + + + EF + Sbjct: 78 KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +A+ ++ D+ + Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ LP + + F+SPG+ N++ G M + V L Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 258 IYISKRLLNIEV 269 >gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP] gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi] gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP] Length = 295 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 6 KKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60 ++R K D+ FP + I+ + +G+ + A+ P+ EF +R+ + Sbjct: 113 QRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLARGED 172 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +S SR P + FF +I GG + E ++ L R + D M+ K + Sbjct: 173 AMAVFQDSYSRY----PYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKK 228 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ EA+ S I+ P + F +P + ++NDP G ++L L+GI + Sbjct: 229 AMTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVW 288 Query: 181 LMI 183 ++ Sbjct: 289 WLM 291 >gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 247 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 10/194 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54 K LI++R F +AL+ + +V+AG V +AV + Q +D VR EF Sbjct: 56 KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVR-EFH- 113 Query: 55 VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 +ETQ + + + E + ++++ F+ V + GG+++ + SR+L D+ Sbjct: 114 YMETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKI 173 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 +++ +++ KA I+ +P + + TSPG++ VL +P G + + + Sbjct: 174 DVRREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYG 233 Query: 174 IGIMVMRLMINFDV 187 + + R +++ +V Sbjct: 234 LSYWLGRRIVDIEV 247 >gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC 27064] gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 313 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 2/170 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KRT F+ P ++ + +AGL + A+A+ + DP E V + +G SL Sbjct: 133 KRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLAVGQSLD 192 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 +++ + +P +E+ T + + ++ GG + +L NL++ L +RK + +V + Sbjct: 193 DALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVTTTLSQI 252 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 K +A + L ++ +PG ++ + G AAF L G+ Sbjct: 253 KVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQG--ATLAAFGLYGL 300 >gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 306 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K L+ P+ LD++ SV AGL A+A ++ + P+ EF V++ +G Sbjct: 153 IAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMKVGKQ 212 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ M + L +++ F I QLG ++ L S +R+++ +AK +A+ Sbjct: 213 KRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKA 272 Query: 125 EAK 127 K Sbjct: 273 PVK 275 >gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N] gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N] Length = 282 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 82/166 (49%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P L + ++RAG + A+ + + P+ E ++ Q LG+S +++ R+ Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + L V + V GGNL++ L +++ LR + + +++AL+ + + AW++ Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +LP ++ ++Y P M L G +L+ + A ++G ++R Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIR 275 >gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47] Length = 297 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 67/136 (49%) Query: 44 SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103 ++ P+R + + LG S S + R MP+ + FST +SV + GG+L+ LA Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213 Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 +++R+ RDR+ + ++++ +++ S + L + V+ +++ P M + G Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSA 273 Query: 164 LLGVAAAFMLIGIMVM 179 + +GI+ M Sbjct: 274 AIAATIVLQAVGIVWM 289 >gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis ANT/505] Length = 291 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62 L + AKF F ++ + + GL + ++ + +DP ++ + +++ +G Sbjct: 108 LAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQ-FADEHADPYIKKQSSLLLQRMSMG 166 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAK 118 S + ++ + V F+ I +Q +L++ L ++ ++ DR+ +KAK Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + K +A G LP+ + L +T P + L+NDP G + VA L G + Sbjct: 227 LSG----TKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLW 282 Query: 179 MRL 181 +RL Sbjct: 283 LRL 285 >gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 314 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/182 (20%), Positives = 85/182 (46%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR KF++ P I+ + +AGL + A+ + + P E +V + +G S+ Sbjct: 133 QKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLAVGASM 192 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +++ + +P +E+ T + + ++ GG + AL NL+ L +RK + +V+ + Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 +++ + L L+ G ++ + G + +A + +G +++R + Sbjct: 253 VTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIRRLSRI 312 Query: 186 DV 187 DV Sbjct: 313 DV 314 >gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4 [Achromobacter xylosoxidans A8] gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4 [Achromobacter xylosoxidans A8] Length = 307 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P LD IVR + G + A + +P+R V+ET SLS Sbjct: 129 KRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLRE----VVETAS---SLS 181 Query: 67 ES------ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 S ++++ R L+E+ + V+S+ + GG + L ++ +RD + ++ Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 A S E + SAWI+ LP ++ + + L DP+G +L A + G Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGG 296 >gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida DSM 20544] Length = 307 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 60/123 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + P LD++ SV+AGL A++ I + P E RR+ + +G+ Sbjct: 156 IQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIRMGVV 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ M L++VS F T I +LG ++ + L N + +R+R+ K QA+ Sbjct: 216 RRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKA 275 Query: 125 EAK 127 K Sbjct: 276 PVK 278 >gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5] Length = 260 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIETQHLGLSLSESI 69 F +AL + +V+AG +AV V + + EFR + L + + E Sbjct: 83 FRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYIESQLRLSVPVEELF 142 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + + ++++ F+ V + GG++++ + ++R+L D+ +K +++A K+ Sbjct: 143 LDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEVKKEIEATLAAKKSE 202 Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 ++ +P + + TSPG+++VL +P G Sbjct: 203 QMVMSIMPAGIICYLKLTSPGFLDVLYGNPFG 234 >gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4] Length = 289 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/184 (21%), Positives = 92/184 (50%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K K + F D F +L +I R++ +G ++ ++ + +R EF R+I+ + Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G +L E+++ P + + FS + + + GG++ ++L L++ L + ++ K Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 +L+ E++ +A I+ LPF + ++ + L + G ++ + IG ++++ Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281 Query: 181 LMIN 184 MI+ Sbjct: 282 RMID 285 >gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 311 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 57/117 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR + P+ALD++ V AGL A+ + + DP+ EF+RV+ LG Sbjct: 155 IKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTRLGRP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++ M+ + +V F + QLG ++ L S +R R+ +A+ +A Sbjct: 215 RRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271 >gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM 13280] Length = 247 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 3/171 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +K+ + A + S+ +GL ++ A+ + + +PVR+EF R G + Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 +E++ +V + + F + + V + G LS+ L +R++R+R ++ K+ + + Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 + SA ++ +P + + S + + P +A A +L GI Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVPGAA---SIAVALLLDGI 234 >gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485] Length = 311 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 61/117 (52%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG + Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIRLGRT 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ M +++V F + + QLG ++S+ L S LR R+ +A+ A Sbjct: 211 RREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAA 267 >gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl] gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl] Length = 311 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R L P+ALD++ SV AGL A+ + + + + EF+RV++ LG + Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIRLGRT 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ +V +++V F + + QLG ++S+ L S LR R+ +A+ Sbjct: 211 RREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAE------ 264 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGV 167 EA A + +P +V+ P V++ PR LGV Sbjct: 265 EAAQKAPVKMLIP-----MVFLIFPALFVVILGPAVPRIMQALGV 304 >gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC 43553] Length = 307 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 68/159 (42%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 KR + + P LD IVR + G + A + +P+R L Sbjct: 128 KRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAKELD 187 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ ++ R L+E+ + V+S+ + GG + L ++ +RD + ++ A S E Sbjct: 188 AALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEV 247 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 + SAWI+ LP ++ + + L DP G +L Sbjct: 248 RLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKML 286 >gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 308 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/181 (21%), Positives = 82/181 (45%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 L +++ AKF P I+ S AGL + A+ V + DP EF + +G Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 L ++ RM + +++ + + + + GG+L +L N+S L RK K +V+ L Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 ++ + +++ + L+ + G + L + G + + +A IG++ + ++ Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304 Query: 184 N 184 Sbjct: 305 K 305 >gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218] Length = 318 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus neapolitanus c2] gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus neapolitanus c2] Length = 298 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIETQHLGL 63 K R + D P LD IV +V AGL ++ + A + G P+ EFRR++ GL Sbjct: 145 KHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKG-PLAQEFRRLLRDMRSGL 203 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 + +E++ RM M + ++S F+ + ++G +L +L + R+ + ++A+ AL Sbjct: 204 ARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEKLALE 263 Query: 124 MEAK 127 K Sbjct: 264 APVK 267 >gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio furnissii CIP 102972] Length = 318 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + ++KKR ++ P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +SE+++++V L E+S ++++ S++GG++S+ L + + RD++N + Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC BAA-450] Length = 314 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 + HL+KKR ++ P+ALD++V +GL + A VA V S E V Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G+ +S++ + ++ L E++ T+++ S++GG+L++ L + RD++N + Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium profundum SS9] gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum SS9] Length = 322 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR + FP+ALD++V + AGL A VA + S + SE + V LG Sbjct: 166 KKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLG 225 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + L ++S+ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A Sbjct: 226 VPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 284 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 AK +I L C+ PG+ V I G ++ V AF Sbjct: 285 ---AKIGTKMIFPLVTCI-------WPGFFTVAI----GPAIIAVLEAF 319 >gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis 11-1] Length = 296 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 K R + D P LD I SV AGL V+ + V + + + EF R++ GL Sbjct: 143 KLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDIRAGLP 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ RM M + +++ F++ + ++G NLS+ L + R+ + ++A+ AL Sbjct: 203 RAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEA 262 Query: 125 EAK 127 K Sbjct: 263 PVK 265 >gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans C54] Length = 303 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 71/165 (43%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 P LD IVR V G ++ A + +P+R L ++ ++ R Sbjct: 138 QLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQVSR 197 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 ++E+ + V+SV + GG + L ++ +RD +A++ A S E + SAWI+ Sbjct: 198 QYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWILA 257 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 LP ++ + + L DP G +L A + G ++ Sbjct: 258 LLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYIL 302 >gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 K+R + L D P LD I V GL ++ A+ + V + + P+R+EFR ++ G+ Sbjct: 184 KRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGMP 243 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E R + +QE+ T I + GG+L+ L + R+ + ++A+ AL Sbjct: 244 RVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALEA 303 Query: 125 EAK 127 K Sbjct: 304 PVK 306 >gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus curdlanolyticus YK9] Length = 274 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 10/189 (5%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--------VIVGQSSDPVRSEFRRV 55 L++KR + F AL + S+ AG V +A + G ++D VR EF + Sbjct: 84 LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVR-EFAMI 142 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G +L +S+ L+E++ F V S + GG+L + + S+++ ++ ++ Sbjct: 143 RHRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDI 202 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLI 174 + ++ + + + + I+ ++PF + +P Y L + P G++ L + F+ Sbjct: 203 QQEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGC 262 Query: 175 GIMVMRLMI 183 G ++ +LM+ Sbjct: 263 GALIRKLMM 271 >gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum DSM 5501] Length = 306 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K P+ LD++ SV AGL A+ +V + + P+ EF R+++ +G Sbjct: 152 ISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIRMGKP 211 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + +++++ F T I +LG ++ + L S+ +R ++ +A+ QA+ Sbjct: 212 RRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKA 271 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 K + LV+F P +L+ Sbjct: 272 PIK-----------MLLPLVFFIFPTLFIILLG 293 >gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27] gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27] Length = 217 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 31 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 91 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210 Query: 181 LMI 183 M+ Sbjct: 211 KML 213 >gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326] Length = 314 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + +++KKR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243] gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA] gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp. HGA1] Length = 306 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 18 NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77 AL I SVR+ L + A+ DP+R E RV+ G +L+ + RM R Sbjct: 134 RALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTD 193 Query: 78 LQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAKASAWII 133 +V + + +Q + GG ++ L A+ + LR + +K ++ + + W + Sbjct: 194 SPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRL----AKWFV 249 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 + +++ T+ + P G ++LGVA G+ + + D Sbjct: 250 ALAMPAIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302 >gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030] Length = 297 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR D P+ LD++ +V AGL A+A + ++ P+ E V+ ++G ++ Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ S + + + + F T + +LG L++ LA ++ +R +A+ +A Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKA---- 259 Query: 126 AKASAWIIG 134 AKAS I G Sbjct: 260 AKASPKIAG 268 >gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10] gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10] Length = 270 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 84 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263 Query: 181 LMI 183 M+ Sbjct: 264 KML 266 >gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum IAM 14863] Length = 270 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Query: 1 MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIE 57 ++ + +R A+ L D AL + S++AG + A+ + S P R IE Sbjct: 77 VRDTLARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIE 136 Query: 58 TQ----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 LG + E++ + +PL+E++ + + GGN+ E + N+++++ DR Sbjct: 137 LTAREVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRL 196 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167 ++ ++Q L+ + + A I+ +P + +V T+P Y+ V G LG+ Sbjct: 197 AVEREIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGL 250 >gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri] Length = 296 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/178 (17%), Positives = 79/178 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I+ + +G ++ + + + +EF + +LG + Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 + R E FF++VI + + GG LS+ + + + + + +K + ++ + Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + + ++ +P + +Y+ P + L + G ++ ++GI ++R MI Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292 >gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium cellulolyticum H10] Length = 247 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51 K +I+KR + F + L + S+ AG P+ A VG SD + E Sbjct: 55 KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKA---FVGALSDLYVLYPSDDAYIVRE 111 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 + +I L +S+ E++S + ++ FS VI + + GGNL +A+ N SRI+ + Sbjct: 112 TKIIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISE 171 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + M +++ L K ++ +P + ++ T+ Y+N + G +AA Sbjct: 172 KIEMAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGR----IAATL 227 Query: 172 MLI 174 LI Sbjct: 228 CLI 230 >gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 317 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60 I R K ++ FP+ALD++V V AG+ + A+ VG+ S P+ EFR + Sbjct: 160 IGARKEKIMEGFPDALDLMVICVEAGMGLDQAINR-VGEEMKLSCPPISDEFRTLNMEMR 218 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G S E++ M L +V+ T++ Q G ++ +AL S +R ++ +A+ + Sbjct: 219 MGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEK 278 Query: 121 A 121 A Sbjct: 279 A 279 >gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM 43183] gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM 43183] Length = 307 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + P+ LD++V SV AGL A+ + +S P+ E RV++ +G S + Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E++ M + ++EV F + S+LG ++ L +R R ++ +A+ M Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAE----EMAQ 270 Query: 127 KASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 K ++ + C+ + ++ PG ++++ Sbjct: 271 KVPVKVMFPVVLCILPALIITVVGPGVLSIM 301 >gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str. 91001] gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953] gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua] gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516] gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F] gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola] gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis FV-1] gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92] gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516] gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92] gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F] gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein [Yersinia pestis CA88-4125] gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis Angola] gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516] gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. India 195] gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A] gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004] gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038] gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003] gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 291 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 77/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 300 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 10/182 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K++ F + FP L I +G+ V++ I+ ++ ++ + + LS+ Sbjct: 119 KQKKIYFTETFPELLLIFNMGSVSGISVNE----ILKKAGQEIKGGLGKECDLIFRRLSI 174 Query: 66 SESISRMVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 E+I+ V Y Q S+ F ++ + GG L E + L++++ + M+ + Sbjct: 175 GENINT-VFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKM 233 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 A++ E + S W++ +P YF +P + + G +++ A +GI +MR Sbjct: 234 AMTGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMR 293 Query: 181 LM 182 M Sbjct: 294 YM 295 >gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 317 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 P LD++ SV AGL ++ + + + P+ E +RV + +G S E++ + + Sbjct: 174 PEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEISMGKSRKEALIDLKERI 233 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 LQ++S F I QLG +S L S+ R ++ +A+ QA+ K Sbjct: 234 DLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVK 284 >gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis YPIII] Length = 291 Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + + P G ++ +IGI+++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia pseudotuberculosis IP 31758] gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia pseudotuberculosis IP 31758] Length = 291 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 76/183 (41%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ K F DFP L +I + +G ++ + + P+ E + + Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG + E F T+I + Q GG L E + LS+I+ +K + K Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ++ + + S II +P S L+Y P + + P G ++ +IGI ++R Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284 Query: 181 LMI 183 M+ Sbjct: 285 KML 287 >gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma proteobacterium HTCC2148] Length = 283 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/162 (20%), Positives = 78/162 (48%) Query: 26 SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 S+++G+ + A + +V P+ EF + E G + ++ + + +S Sbjct: 122 SIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADERLQVPRLSLIF 181 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145 I + + GG L+ + L+ R+ + ++ +V+ + + SA I+ +PF + L+Y Sbjct: 182 QTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMFLMPFFICGLLY 241 Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 P + +L ++ G+++L +A A + +M+ +I D+ Sbjct: 242 LIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283 >gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2] gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 268 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/182 (19%), Positives = 80/182 (43%), Gaps = 6/182 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62 +KR + P +D ++R + AG + A+ + + P+ R +E+ Sbjct: 85 QKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVESGRDY 144 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L + S++ R PL +F + + S G + L +SR LR ++ M+ + A Sbjct: 145 TGLIDDFSKLYRIPPL---TFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAA 201 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + E + +A LP + + + + +VL++ G +L + +++G +++ M Sbjct: 202 TAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFRM 261 Query: 183 IN 184 + Sbjct: 262 VQ 263 >gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016] Length = 329 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 290 EEIAAKIPTK 299 >gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222] Length = 323 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62 K R K + P+ALD++V +GL + A+ + + S + E V G Sbjct: 163 KDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFAKIQAG 222 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +++ +++S++V L E+ +++S S++GG+L++ L + + RD++ A+ A Sbjct: 223 VTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIAA 282 Query: 123 SMEAK 127 + K Sbjct: 283 KIPTK 287 >gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6] gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus assembly [Vibrio vulnificus MO6-24/O] Length = 314 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +KKR P+ALD++V +GL + A+ + + S E V Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S + +V L E++ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1 [Ralstonia solanacearum UW551] gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609] Length = 314 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK S I+ L FC+ S V P + V+ Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++ KR +K P+ALD++V +GL + A+ + + S E V + Sbjct: 156 MVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVN 215 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ +S++ + +++ L+E++ T+++ S++GG+LS+ L + RD++N + + Sbjct: 216 AGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEV 275 Query: 121 ALSMEAK 127 A + K Sbjct: 276 AAKIPTK 282 >gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM 13965] Length = 326 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K +R + P+ +D++ +V AGL + AV + + PV +EFR+ ++ Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LG+S E++ + L E+ F+ + +LG +L+ L + LR ++ +A+ Q Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288 Query: 121 ALSMEAK 127 A+ K Sbjct: 289 AMKTPIK 295 >gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca glomerata] Length = 349 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 37/183 (20%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R A+ ++D P ALD+I + AG P+ A+ ++ G P+ +E V + LG S+ Sbjct: 165 QRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGASM 224 Query: 66 SESISRMV---------------RYMPL----------------QEVSFFSTVISVQSQL 94 +E+ R++ R +P+ E++ F+ + + Sbjct: 225 AEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEES 284 Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G L+ AL L+ R R+ + AL+ +A + L C L F + G + V Sbjct: 285 GARLAAALGRLADQTRARRQER----ALTAARRAGVTAVAPLGLCF--LPAFVALGVVPV 338 Query: 155 LIN 157 ++ Sbjct: 339 VMG 341 >gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P ALD+ + +G P+ A++ + + + FRR + LG +L+E+++ + Sbjct: 79 LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALT---EF 135 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134 L + I + G L+++L L++ LR DR+ ALS +A W++ Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQ-----AALSHAHRAGVWMV- 189 Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157 LP C+ L F + G + V+I+ Sbjct: 190 -LPLCLCFLPAFIAAGLLPVVIS 211 >gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7] gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7] Length = 315 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 15/162 (9%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76 PNALD I++ +S + +E V + +LG LS+S ++ Sbjct: 161 PNALDEIIKE---------------QNTSQVLINELITVKQNLNLGYPLSKSFMLAYEHL 205 Query: 77 PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136 ++E+ F+ +SV + GGN+ E L + + +K + K S + + Sbjct: 206 QIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLTVGI 265 Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 P LV F +P + G ++ +A +F+L GI + Sbjct: 266 PLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307 >gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20] gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 281 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279 >gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2] Length = 314 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P +E ++ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK S I+ L FC+ S V P + V+ Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum ATCC 27405] gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium thermocellum DSM 2360] gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum JW20] gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM 1313] Length = 268 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54 K +I+KR ++ F + L I S+ AG V A + ++ + E Sbjct: 76 KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ +++ + + L+++ F+ V + GGNL + N + I+ D+ Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K ++ +PF + ++ T+ YM + + G +++ A + I Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255 Query: 175 GIMVMRLMINFDV 187 G V + +++ + Sbjct: 256 GYFVSKKIMDIKI 268 >gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 281 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R+I Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279 >gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908] gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908] Length = 287 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + L KKR A + P LD + S+ AGL ++ A++ V + S P+R EF +VI Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S ++S M + + E++ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250 Query: 120 QALSMEAK 127 +AL K Sbjct: 251 KALEAPVK 258 >gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus sp. Y412MC10] gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp. Y412MC10] Length = 290 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 A+ + E +S ++ + + +V +P +M Sbjct: 252 AIARTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16] Length = 314 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + + KR ++ P+ALD++V +GL S A+ + + S E V Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ +S++ +V ++E++ T++S S++GG+LS+ L + RD++N + Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 274 EEIAAKIPTK 283 >gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1] gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1] Length = 326 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54 K+ I KR D FP+ALD+++ V AG + A+ + + S P+ EF Sbjct: 163 KYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEI 222 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G ++ + M + +Q+V+ F T + S G +++EAL S +RD++ Sbjct: 223 VSYEMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRI 282 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144 +A+ +A + K + + ++ FCV L+ Sbjct: 283 SRAEEKANKLPTKLTLF---TMLFCVPPLL 309 >gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 256 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 8/191 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56 L K+R K L +F AL ++ + AG + +A ++ ++G+++ + EF+++ Sbjct: 67 LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENA-MISREFQKIS 125 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 E L + + + L E+ FS + SV + GG L + S ++ D+ + Sbjct: 126 EGLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGIS 185 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176 ++ LS + I+ +PF + + +SP ++ +L G +L+ L+ + Sbjct: 186 EEILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAV 245 Query: 177 MVMRLMINFDV 187 + +++ +V Sbjct: 246 RLSERILDIEV 256 >gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter alkaliphilus HTCC2654] gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium HTCC2654] Length = 329 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56 +K I+ R A+ FPNALD++ S AG+ DA VGQS S + EF Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGF-DAAMTRVGQSLATVSPAISEEFLLCQ 227 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 ++++ M M + EVS F+ V+S + G ++++AL + +R+ + MK Sbjct: 228 AEILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMK 287 Query: 117 A 117 A Sbjct: 288 A 288 >gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R K L D P LD+I SV AGL A+A ++ + EF + ++ +G+ Sbjct: 152 IQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEITMGIE 211 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANL---SRILRDRKNMKA 117 ++ M ++E+S F + + +LG +LS+ L ANL R + K MKA Sbjct: 212 RKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREKAMKA 271 Query: 118 KVQAL 122 ++ L Sbjct: 272 PIKML 276 >gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein [Vibrionales bacterium SWAT-3] Length = 323 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + + K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ ++++++V L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 295 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 57/116 (49%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R+ L P+ LD++ SV AGL A+ +V +S P+ EF + +G Sbjct: 144 RQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIRMGKPR 203 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 E++ M R + + +VS F + LG ++S L + +R ++ +A+ +A Sbjct: 204 REALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKA 259 >gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae FF5] Length = 96 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 GGN SE + NL +++RDR+ +++A++ E + +A ++ LP ++ +P Y+ Sbjct: 5 GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPNYLLH 64 Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183 + +D G ++L A A G +V+ M+ Sbjct: 65 MWDDESGKIMLSAAFALQATGCVVLWRML 93 >gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM 3645] gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM 3645] Length = 288 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57 ++ ++R + + P+ +D++V + G+ ++A++ + + + + E V Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 LG+SL +S RM ++EV ST + + G + EA+ LS +LR ++ +A Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234 Query: 118 KVQA 121 + +A Sbjct: 235 EERA 238 >gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM 10507] Length = 247 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 25/177 (14%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRRVIE 57 I+++ + F + LD + +++AG V +A+++ + G+ +D R E R + + Sbjct: 59 IREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTR-ELREMED 117 Query: 58 TQHLGLSLSESISRMVRYMPL------QEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 L LS + R+ +M L ++V F+ V + GG++ + L +++L D Sbjct: 118 K----LKLSVPVERL--FMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGD 171 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + +K +++A+ K+ ++ +PF + + TSPG++ VL + L GVA Sbjct: 172 KIEVKKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGN-----LFGVA 223 >gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex V453] gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex V453] Length = 290 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK R + + + P L+ IV V AG V AV V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + E +S ++ + + +V +P +M Sbjct: 252 AIGRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR] Length = 233 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +HL K+R K P L + +R+G V A+ + G P+ E ++ + + Sbjct: 46 RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQS-----QLGGNLSEALANLSRILRDRKNMK 116 G L++ + R +P+ FS + VQS + GG S+ L+ L+ ++++K Sbjct: 106 GKPLTDCLEDWQRRVPV-----FSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIK 160 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-G 175 + L+ +A+ A I+ +P + L+ + + + G +L VA M+I G Sbjct: 161 ERQITLTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGG 220 Query: 176 IMVMRLM 182 MV R+M Sbjct: 221 WMVKRIM 227 >gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815] gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815] Length = 292 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 M+ + ++ A L P LD + +V AGL V+ A+ V + D P+R EF V+ Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 GL +++ R + EVS I+ ++G L++ L S R + +A+ Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253 Query: 120 QALSMEAK 127 QA+ K Sbjct: 254 QAMEAPVK 261 >gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1] Length = 308 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K ++KR+ + D P+ LD++ SV AGL A+A + + + EF R ++ + Sbjct: 153 KIAMRKRSIQ--KDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMRM 210 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G+ E++ M + ++S F+T + QLG ++ + L S +R+++ + + Q Sbjct: 211 GVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKR--RQRTQE 268 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 L+M+A LP LV+F P V++ Sbjct: 269 LAMKAPVKML----LP-----LVFFIFPAIFVVVLG 295 >gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae pv. mori str. 301020] Length = 179 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 47 PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 P++ R+ LG+SL ++ E F+ + V + GGN SE + NL Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61 Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLP 137 +++RDR+ +++A++ E + +A ++ LP Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTALVLALLP 92 >gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842] gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842] Length = 327 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ FF ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165 A + + + +A I+ +LPF F P ++L+ P G ++ Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFK----FFMPQAYSILMRTPLGSIVF 303 >gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum WAL-14163] Length = 257 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 170 AFMLIGIMVMRL 181 F+ I+ + L Sbjct: 246 CFLAFKILDIEL 257 >gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio cellulolyticus CD2] Length = 264 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/193 (18%), Positives = 88/193 (45%), Gaps = 7/193 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54 K +I+KR + F + L + S+ AG + + +++I S+ + E Sbjct: 72 KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + ++ ++ L+++ F V+ + GGN+ + + N S I+ D+ Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 +K ++ L K I+ +P + + ++ YM + +D RG +++ ++ A ++I Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251 Query: 175 GIMVMRLMINFDV 187 + + ++N V Sbjct: 252 AYFISKKIMNIKV 264 >gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane protein [Photobacterium profundum 3TCK] Length = 224 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62 KKR K + FP+ALD++V + AGL A VA + S + +E + V LG Sbjct: 68 KKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCRKVRLG 127 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + + ++++ + L E+ ++IS +LG ++ + L + RDR+ KA+ +A Sbjct: 128 VPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 186 Query: 123 SMEAKASAWIIGSLPFCV 140 AK +I L C+ Sbjct: 187 ---AKIGTKMIFPLVTCI 201 >gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 311 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 52/106 (49%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ALD++ V AGL A+ + + DP+ EF+RV+ LG +++ M+ Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + +V F + QLG ++ L S +R R+ +A+ +A Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271 >gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum WAL-14673] Length = 257 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55 K L +R + F A+ I+ S+ AG V +A A + + + + EF + Sbjct: 66 KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ ++ L+E+ FS + +V + G L + + ++ DR + Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169 + ++ ++ E + I+ +P+C+ + F+SPG+ + G +L+ A+ Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245 Query: 170 AFMLIGIMVMRL 181 F+ I+ + L Sbjct: 246 CFLSFKILDIEL 257 >gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium colombiense DSM 12261] Length = 296 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 59/116 (50%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K+R + + P+ +D++V SV AGL + A++ + + P+ F R + LG S Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + ++ +P++EV F + +LG +SE L + + L+ + +KA+ A Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHA 258 >gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243] gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b] gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14] gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91] gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9] gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210] gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894] gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112] gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215] gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Burkholderia pseudomallei 1710b] gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a] gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e] gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur 52237] gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13] gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655] gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576] gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei Pakistan 9] gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei MSHR346] Length = 319 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus sp. HGF5] Length = 290 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 2 KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55 K L KK T + D + P L+ IV V AG V A+ V ++ D P+ +E +R+ Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRM 191 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114 + G ++ + + +QEVS F+T + + + GGN AL +LSR+L +++ Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + + E +S ++ + + +V +P +M Sbjct: 252 AITRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286 >gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 279 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 I R LD P +D+I V+AG+ V +V I +S+D + +++ + Sbjct: 124 INTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEV 183 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 L E + + R M + E+ F + G +L E L LS+ +RD + + ++ + Sbjct: 184 S-GLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKI 242 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + AK S +I + F ++ L+ +PG + ++ N Sbjct: 243 GKLSAKMSVPLILFIMFPITILI--AAPGILRIMQN 276 >gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae B-3650] Length = 223 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60 +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 71 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 130 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA Sbjct: 131 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 188 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + L EA + +L F + +V +P M Sbjct: 189 RILGEEASSKLVFPMALIFLI-VIVIVAAPAMM 220 >gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium 8_1_57FAA] Length = 205 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54 ++ L +KR +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + ++Q + K I+ ++PF + + T +++VL + G + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTIC 186 >gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 66/134 (49%) Query: 51 EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110 E + +I L +S+ ++IS + ++ FS VI + + GGNL EA+ N SRI+ Sbjct: 111 ETKIIINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIIS 170 Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170 ++ MK +++ L + I+ +P + ++ T+ Y+ + G + + + Sbjct: 171 EKIEMKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLV 230 Query: 171 FMLIGIMVMRLMIN 184 +++ ++ ++N Sbjct: 231 LLIVAYLISNKIMN 244 >gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 288 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60 +KK+ L + P L+ I+ V AG V + + ++ P+++E + Sbjct: 136 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 + +SL++S+ + R +QE+S F+T + + + GG +L+ AL NLS+ L +R+ KA Sbjct: 196 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 253 Query: 120 QALSMEAKAS 129 + L EA + Sbjct: 254 RILGEEASSK 263 >gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1] gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain [Arthrobacter aurescens TC1] Length = 296 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 6/153 (3%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R + PN LD ++ SV AGL A+A S P+ E R ++ G S Sbjct: 143 ERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGRSRK 202 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 E+ + + + ++ F I G ++ L ++ +R ++ +A+ QA+ + Sbjct: 203 EAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMKLPV 262 Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLIN 157 K ++ L FC+ +++ P +NV+ N Sbjct: 263 K----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291 >gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2] gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2] Length = 326 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61 +KKR A+ + FP+ALD+++ V AG + ++ + +S + EF V + Sbjct: 167 VKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M + + +V+ F T + + G +++EAL S +RD++ M+A+ +A Sbjct: 227 GKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKA 286 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157 ++ K + +G++ F + L+ P N+ + Sbjct: 287 NTLPTKLT---LGTMLFTLPPLLIILIGPSIHNIAVT 320 >gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a] gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b] gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a] Length = 313 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 265 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302 >gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia xenovorans LB400] gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia xenovorans LB400] Length = 293 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++R A+ L P LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein [Planctomyces maris DSM 8797] Length = 285 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 1/177 (0%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +R K D + +D + R+ + G ++ + ++ P+ E + +G+S+ Sbjct: 103 RRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVSMK 162 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++ + + ++ S + V + GG+L + L L+R +RDR +++ + + Sbjct: 163 AALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGS 222 Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM 182 +A+A ++ LP + P Y+ L+ G A A +IG + V+R++ Sbjct: 223 RATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVL 279 >gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii KC4] Length = 285 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 3/173 (1%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQHLGLSLSESISR 71 +P AL + +++ G A+ + P+R F R + T + E++ Sbjct: 106 QYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVLE 165 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131 + + +++ + + + + GGNL E L +L + L +R++ + V A++ EA+ +A Sbjct: 166 VAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAA 225 Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 + +LPF + + +P +M + + G+ L+ A +L+G V+R M++ Sbjct: 226 FLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMVS 278 >gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans PW2] Length = 320 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/149 (18%), Positives = 69/149 (46%) Query: 11 KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 K P A + ++ +G ++ + + + +PVR+EF R + G+S + ++ Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 ++ +P + + + V + G L + LA S ++ DR + +++ + +A+ SA Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264 Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 ++ +P ++ ++ S + L P Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP 293 >gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415] Length = 281 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + + ++D P +D++ +V+ G+ + A VA+ + + R++ Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SLS ++ M +P +E+ F TV+ G +L E L LS +R+ + + + + Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 ++ AK S +I + F + L+ +PG M VL Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277 >gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 +++IK++TA + P+ LD++ SV AGL A++ +V P+ E + Sbjct: 151 RNIIKRKTAIY-HQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREISM 209 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKV 119 G+ E++ R+ E+ F I+ +LG ++ + + +R ++N++ + Sbjct: 210 GIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQA 269 Query: 120 QALSME 125 Q LS++ Sbjct: 270 QKLSVK 275 >gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 291 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR K D +P+A+D I VRAGL + +A+A + + + +R F R E Sbjct: 105 RKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYRATGRF 164 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124 + + R+ M + + ++GG +L L LS LR+ +A+++A Sbjct: 165 HDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAELEARQS 224 Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 +A + + P+ V ++ G + P G ++L A ++ +M Sbjct: 225 WTINAARLAVAAPWVVLAMLALRG-GSLQAYAT-PTGWLVLAFGAGLCIVAYRLM 277 >gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4] gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4] Length = 320 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRS-EFRRVIE 57 ++ LIKKR + + FP+ LD+++ AGL ++ A+ + + S PV S E V Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G++ E++ ++E+ F +S + G ++++ L S RD++ +A Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278 Query: 118 KVQALSMEAKASAWIIGSLPFCV 140 + M AK +I L FC+ Sbjct: 279 E----EMAAKMGTKMIFPLIFCI 297 >gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891] Length = 314 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 ++ KR ++ P+ALD++V +GL + A+ + + S E V Sbjct: 157 MVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKIS 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G+ +S++ + +++ L E++ T+++ S++GG+LS+ L + RD++N + + Sbjct: 217 AGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEI 276 Query: 121 ALSMEAK 127 A + K Sbjct: 277 AAKIPTK 283 >gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01] Length = 323 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ +++ L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316] Length = 254 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/179 (20%), Positives = 84/179 (46%), Gaps = 8/179 (4%) Query: 16 FPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68 F +A+ ++ S++AG + +A + ++ G++SD + R+ + + L + Sbjct: 77 FKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSD-ISFYLSRISKGLRNNVPLEKL 135 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 I M + ++ F+ V SV + GGN++E + ++ + ++ +++ L + Sbjct: 136 IFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVLISAKRL 195 Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 A I+ +PF + + TSPG+ + L ++ G L+ V I + ++N + Sbjct: 196 EARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCISYYLSEKIVNISI 254 >gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98] Length = 275 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 114 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 167 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FST++ + G ++ +L LS LR ++ M Sbjct: 168 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 227 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 228 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 264 >gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium Y4I] Length = 326 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R K + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 168 IEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKA 227 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + M +Q++S F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 228 GKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAA 287 Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 + K + +G ++P + LV + G MN+ Sbjct: 288 NKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321 >gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis MSMB43] Length = 279 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R K ++DFP+ALD++ V AGL + A+ + +D +R R I LGL Sbjct: 118 IRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPIVADELGLM 171 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V F ++ + G ++ +L LS LR ++ M Sbjct: 172 LLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRM 231 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 232 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 268 >gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758] Length = 301 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/182 (18%), Positives = 81/182 (44%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 K R A+F + +L ++ ++RAG + A+ + S DP++SE + + Sbjct: 119 KSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQIDGDI 178 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 ++ M + +++ ++ ++GG+L+++L + + R +++ +++ + Sbjct: 179 VAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIESETSS 238 Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 AS + + + ++ P + DP G +L V F G +++ M + Sbjct: 239 VIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIYKMADI 298 Query: 186 DV 187 DV Sbjct: 299 DV 300 >gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. GAI101] Length = 308 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 7/154 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 ++KR + FP+ALD+++ V AG + ++ + + S + EF V Sbjct: 153 VEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+VS F TV+ + G ++S+AL + +RD++ M+A+ A Sbjct: 213 GKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAA 272 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A ++ ++P L+ +P MN+ Sbjct: 273 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 303 >gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM 12885] gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM 12885] Length = 331 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ +D++ SV AGL A+ + + PV +EFR+ ++ LG+ E++ + Sbjct: 189 LPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLADR 248 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 L E+ F+ + +LG +L+ L + LR ++ +A+ QA+ K Sbjct: 249 CELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIK-------- 300 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 + LV F P VL+ G L+ + AAF Sbjct: 301 ---MLLPLVLFIFPTLFIVLL----GPALIQILAAF 329 >gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 282 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSS--DPVRSEFRRVIETQ 59 L+++R + + P AL ++ V AG PV A + + G+ P+ E+ RV+ Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97 G S S ++ R R +QEVS F+TVI + + GG+ Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGD 226 >gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 324 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + +A I+ +LPF F P ++L+ P G ++ + + +L Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 308 >gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1] gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1] Length = 310 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R + P+ALD++ SV AGL A+ + ++ + EF +++ H+G Sbjct: 157 IRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECHMGKP 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ M + + ++S F I + LG ++ L S+ +R ++ + K + L+M Sbjct: 217 RREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKR--RQKTEELAM 274 Query: 125 EA 126 +A Sbjct: 275 KA 276 >gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 13/168 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57 H + + K +F + I S+ AG + +A+ + + + E + +I Sbjct: 63 HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113 + + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++ Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + A ME K I+ +P+ + V +PGY ++L G Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226 >gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756] Length = 205 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ ++PF + + T +++VL + G + + + Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192 Query: 175 GIMVMRLMINFDV 187 R +I+ +V Sbjct: 193 AYSFGRKIIHIEV 205 >gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118] gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118] Length = 312 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58 + HL+ R + + FP+ALD++ V AGL A+ + Q P ++ R++ Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206 Query: 59 Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 + G ++ + ++EV F T+IS + G +++ +L + +LR R+ +A Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + A AK + ++ L FC+ S +V P + + Sbjct: 267 EEAA----AKIALKLLFPLIFCIFPSLMVVLMGPAMIQI 301 >gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium 3_1_46FAA] Length = 249 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRR 54 ++ L +K+ +F F NA+ + +++AG V +A+ + + + +R EFR+ Sbjct: 57 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 ++ + + + + M ++ F TV S GG+ + N +I+ + + Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 + ++Q + K I+ ++PF + + T +++VL + G + + Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTIC 230 >gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 327 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +R KF+++ + + I ++++ L V DA+ + +R E + Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G S++E++S + + P +E+ F+ ++ V + GG +EAL +++ DRK + ++ Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258 Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173 A + + + +A I+ +LPF F P ++L+ P G ++ + + +L Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 311 >gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus VM223] Length = 314 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603] gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573] gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus assembly [Vibrio mimicus MB-451] Length = 314 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + H +K+R P+ALD++V +GL + A+ + + S E V Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+ + + +V L E+ ++S S++GG+LS+ L + + RD++N + Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 275 EEIAAKIPTK 284 >gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345] gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345] Length = 320 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L K+R K FP+ALD++V AGL + A VA + S + SE V Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S R+++ A Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 278 EEQAAKLAVK 287 >gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4] gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia sp. CCGE1001] gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1001] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 ++R A+ L LD + +V AGL ++ A+ V + + P R E V+ GL+ Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174] Length = 275 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQ 59 +R L F + L+ + S G A +A I G+ +D V E ++ Sbjct: 91 RRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVH-EIEMIVNGI 149 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 + G ++ + L +V F+T+ V S+ GGNL +A+ + RI+ ++ M+ ++ Sbjct: 150 YNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEMEMEI 209 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159 + L K I+ +P + +V + G M+++ N P Sbjct: 210 RTLLTANKNELNIMMLMPLII--MVTLSGMGSMSIVQNTP 247 >gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668] gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308 >gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA] Length = 313 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292 >gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D] gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D] Length = 313 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61 IK+R + FP++LD+I+ V AGL + AV +V D + E+ + Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ +++VS ++ + G +++E+L S +LR ++ M A+ +A Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292 >gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella benthica KT99] Length = 322 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++HL +R FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++ L S RD++ A Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 280 EEQAAKLAVK 289 >gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64 ++R + L P LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ + ++G L+++L S R + +A+ QA+ Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71 L P LD + +V AGL ++ A+ V + + P+R EF V+ GL+ E++ R Sbjct: 147 LKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALYR 206 Query: 72 MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 M + ++EV+ + ++G LS++L S R + +A+ QA+ K Sbjct: 207 MDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVK 262 >gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110] gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 ++ +IK R + ++FP+A D+++ V AGL + A+ + + S+ + E Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + +S+ + ++E+ F+T+++ + G ++ E+L S LR ++ ++A Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144 + A + K ++ + C+S ++ Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI 281 >gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella piezotolerans WP3] gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative [Shewanella piezotolerans WP3] Length = 321 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L K+R FP+ALD++V AGL + A VA + S + SE V Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 279 EEQAAKLAVK 288 >gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003] Length = 337 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 + RT + D FP+ALD+++ V AG + + + + SS P + EF V Sbjct: 176 VAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKA 235 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL + + +V+ F TV+ Q G +++EAL + +RD++ M+A+ A Sbjct: 236 GLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAA 295 Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157 + K + +G++ F V L+ P +++ N Sbjct: 296 NKIPTKMT---LGTMMFTVPPLLIILVGPSVHDMMEN 329 >gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305] gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305] Length = 313 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 265 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302 >gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus fervens AG86] Length = 299 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRM 72 ++ P AL I++ S+ +G +++A+ +V + V FR+VI +H +S E+I+ + Sbjct: 85 NNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEHQKISFEEAITVV 144 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132 + + + ++ + GG+LS++L L++ L D K+ K ++ +++ A +I Sbjct: 145 STLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFI 204 Query: 133 I--GSLP 137 I G +P Sbjct: 205 ILCGVIP 211 >gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32] Length = 323 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 + L K+R K + P+ALD++V +GL + A+ + + S + E V Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G+++ +++ + + L E+ +++S S++GG+L++ L + + RD++ A Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277 Query: 118 KVQALSMEAK 127 + A + K Sbjct: 278 EEIAAKIPTK 287 >gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614] gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614] Length = 304 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R+ + P+A+D++ SV AGL AV + + P+ E RV+ LG S S Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + + E+ F + LG +++ L SR +R ++ A+ +A + K Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275 Query: 128 ASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 + +I FC+ ++ P +N++ Sbjct: 276 ITVPLI----FCILPCLFVVVLGPAVLNIM 301 >gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus albus 8] gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus albus 8] Length = 290 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+K ++ DFPNA+ I V G+ + +A + S +P+ + R V++ + G+S Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200 Query: 65 LSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRK 113 +++ R +E+ FST I+ ++S G +L++ L + +L + K Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESD-GTHLADTLIKQADLLLNEK 250 >gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6] gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6] Length = 309 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 49/98 (50%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR P+ALD++ SV AGL A+ + + D + EF++V+ LG + Sbjct: 156 IKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIRLGRT 215 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 E++ + + +V F+ + QLG ++S+ L Sbjct: 216 RREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKIL 253 >gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC 29176] Length = 197 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/193 (16%), Positives = 85/193 (44%), Gaps = 6/193 (3%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59 ++ + K+ +F F +++ I+ +++AG +A+ +SE R + E + Sbjct: 5 LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64 Query: 60 -----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 + + + + +S + ++V F TV + + GG+ + + +++ ++ Sbjct: 65 MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 + ++Q + K I+ +PF + + T ++ VL +P G +++ + A Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184 Query: 175 GIMVMRLMINFDV 187 + + MI +V Sbjct: 185 AYIWGKKMIKIEV 197 >gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2] gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2] Length = 287 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRS---EFRRVI 56 L+ +R + F AL + S+ AG V +A + DP EFR V Sbjct: 98 LLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVK 157 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G L +++ + + L +++ FS V +V + GG+L E + S+ + ++ +K Sbjct: 158 YRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVK 217 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168 ++ L + + A I+ ++PF + +P YM L G++LL + Sbjct: 218 QEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYGGG-GYVLLTIG 268 >gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1] Length = 306 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 11/155 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K +R + P+ LD+++ SV AGL A+ + + + E + ++ + Sbjct: 149 KRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIRM 208 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + E++ M + ++S F + + QLG N+++ L + +R R+ M+A+ +A Sbjct: 209 GKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEA 268 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 + K + LV+F P VL+ Sbjct: 269 MRAPIK-----------MLFPLVFFIFPALFVVLL 292 >gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264] gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264] Length = 296 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I R ++DFP+ALD++ V AGL + A+ + +D +R R + LGL Sbjct: 135 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 188 Query: 65 LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L E S + L ++V FS ++ + G ++ +L LS LR ++ M Sbjct: 189 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 248 Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 +A+ +A AK + ++ L FC+ + L P ++++ Sbjct: 249 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 285 >gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius sp. TM1035] Length = 326 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62 +KR + D FP++LD+++ + AG + ++ + + S + EF V G Sbjct: 169 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIKAG 228 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 + M +Q++S F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A Sbjct: 229 RDKPSVLGEMAERCGVQDISSFVTVL-VQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKA 287 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155 + K + A ++ ++P + LV + G M++L Sbjct: 288 NKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322 >gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S] Length = 322 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + + FP+ALD+++ V AGL + D V + S V + +V+ G Sbjct: 164 RRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHR 283 Query: 124 MEAKASAWIIGS-LPFCVSTLV 144 + S ++ LP + L+ Sbjct: 284 LPVLLSVPLVACMLPVMIGVLM 305 >gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum PSI07] Length = 313 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ + Sbjct: 153 IKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS +++ + +VS ++ + G +++ +L S +LR ++ M A+ +A Sbjct: 213 GLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK I+ L FC+ +Y Sbjct: 273 ----AKIGTKILFPLIFCIFPSIY 292 >gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella sp. SE45] Length = 324 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++ M +Q+VS F TV++ + G ++++AL + +RD++ M+A+ +A Sbjct: 225 GKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 293 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 P LD + SV AGL ++ A+ V + + P+R EF V+ GLS ++++ RM Sbjct: 151 PVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDLKSGLSRADALRRMDDR 210 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 + ++EV+ F + ++G L+ L S R + +A+ QA+ K Sbjct: 211 LRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEKQAMEAPVK 262 >gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN] gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN] Length = 318 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 M+ L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+ Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + QA + K + L++F P + VL+ Sbjct: 270 EEQAAKIALK-----------LLFPLMFFIFPTLLAVLVG 298 >gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931] Length = 284 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ T P N+ N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270 >gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R ++ P+ALD++V V AG+ + A + + + +++PV + E VI Sbjct: 167 IKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +E++ + + L++V+ T+I G ++S L S +R + +A+ A Sbjct: 227 GKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIA 286 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 287 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 318 >gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain protein [Rothia dentocariosa M567] Length = 284 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H K R K +P+A+D + ++RAGL + +A+ + + +R F R Sbjct: 93 VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 S++R+ Y+ + + ++GG +L L LS LR+ +A++ Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 QA +A + P+ V L+ T P N+ N G +L+ A +I +M Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270 >gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829] Length = 296 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 1/170 (0%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 D P+ ++ ++ AG S A+A + F++ G S+SE ++ M Sbjct: 122 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMAH 181 Query: 75 YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + V F T + + + G L ++++ ++ K + + +A+ S ++ Sbjct: 182 TLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVVS 241 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP + +++ S + I P G + LG+AA I +M++R ++ Sbjct: 242 SLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 290 >gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula stellata E-37] Length = 324 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 ++KR + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 MEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S+ ++ M Q+VS F TV++ G ++S+AL + +RD++ M+A+ A Sbjct: 225 GKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia sp. CCGE1003] gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp. CCGE1003] Length = 293 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 ++R A+ L LD + +V AGL ++ A+ V + + P+R E V+ GL+ Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLKSGLN 199 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +E++ R+ + ++EV+ F + ++G L+++L S R + +A+ +A+ Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKKAMEA 259 Query: 125 EAK 127 K Sbjct: 260 PVK 262 >gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon 107 str. F0167] Length = 227 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV------IVGQSSDPVRSEFRRV 55 K LI + K + +F A+ II + AG + +++ ++ + + EF + Sbjct: 36 KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 + ++ +S+ + + +++ F+ V+ + + GG L +++ ++ D+ + Sbjct: 96 NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 K ++ ++ + ++ P + + +SPG+ N++ G + + L Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215 Query: 176 IMVMRLMINFDV 187 I + + ++N +V Sbjct: 216 IYISKGLLNIEV 227 >gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius sp. 217] Length = 325 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62 +KR + D FP++LD+++ + AG + ++ + + +S P +E ++ Q G Sbjct: 167 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAG 226 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121 ++ M +Q+++ F TV+ VQSQ G ++ EAL + +RD++ M+A+ +A Sbjct: 227 RDKPSVLNEMAERCGVQDITSFVTVM-VQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKA 285 Query: 122 LSMEAKAS 129 + K + Sbjct: 286 NKLPTKMT 293 >gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein [Thermobaculum terrenum ATCC BAA-798] Length = 643 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 56/114 (49%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + L P+ALD++ SV AGL A+ IV + + + EF V+ LG S Sbjct: 487 ITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMKLGKS 546 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 +++ M + L E+ + I ++G ++ L+ S +R R+ +A+ Sbjct: 547 RRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAE 600 >gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM 12885] Length = 274 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 11/182 (6%) Query: 11 KFLDDFPNALD----IIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K +D AL+ ++ ++AG P+ +A +V +P ++EF + G Sbjct: 87 KAVDAAAEALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAG 143 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LSL E++ + L+ + V + + GG+ + + LR+++ A V A Sbjct: 144 LSLDEALGQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAAR 203 Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182 + EA+ SA ++ LP V+ P ++ L NDP G L A L GI ++R + Sbjct: 204 TAEARLSARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263 Query: 183 IN 184 Sbjct: 264 AG 265 >gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium chlorophenolicum L-1] Length = 322 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + FP+ALD+++ V AGL + D V + S V + +V+ G Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S +++ RM + + E+ F+T++ QLG ++ + L + +R+++ M+A+ +A Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKA 281 >gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter gallaeciensis 2.10] gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107] Length = 326 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R + FP+ALD+++ V AG + A+ + + S + EF V + Sbjct: 168 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKA 227 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M +Q+VS F TV+ + G +++EAL + +RD++ M+A+ A Sbjct: 228 GKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAA 287 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A + ++P + LV ++ G N+ Sbjct: 288 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 321 >gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1] gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Aromatoleum aromaticum EbN1] Length = 315 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 + LI R + + FP+ALD++ V AGL V A VA + S+ + E V Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL + ++ + ++EV F ++ + G +++ +L S +LR R+ +A Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + +A+A I L F L++F P M VL+ Sbjct: 267 E--------EAAAKIALKLLF---PLIFFIFPSLMLVLLG 295 >gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM 15829] Length = 314 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 1/171 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 D P+ ++ ++ AG S A+A + F++ G S+SE ++ M Sbjct: 139 HDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMA 198 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + V F T + + + G L ++++ ++ K + + +A+ S ++ Sbjct: 199 HTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVV 258 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184 SLP + +++ S + I P G + LG+AA I +M++R ++ Sbjct: 259 SSLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 308 >gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str. Hildenborough] gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 284 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61 IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I Sbjct: 125 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 184 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A Sbjct: 185 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 244 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 245 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 276 >gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134] gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134] Length = 323 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIE 57 + H + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++S + +++V F++++ + G +L ++L LS +LR ++ M+A Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + QA AK + ++ L F + S L+ P ++ + Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea thermophila UNI-1] Length = 319 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + P+ALD++ V AGL A+A + + + F RVI+ LG + Sbjct: 162 ISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQLGKT 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +++ M + + E++ F + QLG ++++ L S +R R+ A+ +A Sbjct: 222 RRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEA 278 >gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus infernus ME] Length = 299 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQH 60 L + + K ++ P AL IIV ++ +G +++A+ +V + V F RV IE Q Sbjct: 74 LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L S ++++ + + + + ++ + GGNLSE L L++ L D + K ++ Sbjct: 134 L--SFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLM 191 Query: 121 ALSMEAKASAWII 133 +++ + A +I+ Sbjct: 192 SVTANSLAMGFIM 204 >gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. AzwK-3b] Length = 328 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 72/134 (53%), Gaps = 9/134 (6%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRV 55 K+ + KR + +D FP++LD+++ V AG + ++ + + +S P +E ++ Sbjct: 162 KYWVTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQI 221 Query: 56 IETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRK 113 + Q G ++ M +Q++S F TV+ VQSQ G ++++AL + +RD++ Sbjct: 222 VANQIKAGRDKPSVLNEMAERCGVQDISSFVTVL-VQSQTFGTSIADALRVYAGEMRDKR 280 Query: 114 NMKAKVQALSMEAK 127 M+A+ +A + K Sbjct: 281 VMRAEEKANKLPTK 294 >gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter antarcticus 307] Length = 326 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGL 63 +R + ++ FP++LD+++ V AG + ++ + + S P + E++ V G Sbjct: 169 ERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMKAGK 228 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 ++ + M + ++S F TV+ Q G +++EAL S +RD++ M+A+ +A + Sbjct: 229 DKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEKANT 288 Query: 124 MEAK 127 + K Sbjct: 289 LPTK 292 >gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4] gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris RCH1] Length = 323 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61 IK+R + ++ P+ALD++V V AG+ + A+A + QS+ PV E + I Sbjct: 164 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 223 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + + +++V+ T+I G +++ L S +R + +A+ A Sbjct: 224 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 283 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155 M K ++ L FC+ ++ T P ++ ++ Sbjct: 284 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 315 >gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159] Length = 303 Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R P+A+D++V SV AGL A+ +V + + + EF R + +G+ Sbjct: 151 IAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMRMGIP 210 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +++ + R + + +++ F + QLG ++S+ L + +R R+ +A+ + Sbjct: 211 RRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQ----EL 266 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 KA +I + F + +Y Sbjct: 267 AHKAPIKMIFPMVFLIFPALY 287 >gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4] gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4] Length = 287 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 + L KKR + P LD + S+ AGL ++ A++ V + + P+R EF +VI Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G+S +++ M + + EV+ + ++ + G +L + L S R + +A+ Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250 Query: 120 QALSMEAK 127 +AL K Sbjct: 251 KALEAPVK 258 >gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1] Length = 300 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 15/135 (11%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL------ 61 R ++ D FP+ LD++V SV AGL + AV + +D + + + T HL Sbjct: 148 REREYADGFPDLLDLLVASVEAGLSLDAAVTRV----TDELERRYPNL--TVHLRFLVLE 201 Query: 62 ---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G + ++ S + +++ +T++ ++G +L + L S+ +R ++ ++A+ Sbjct: 202 LRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAE 261 Query: 119 VQALSMEAKASAWII 133 +AL++ AK + +I Sbjct: 262 EKALALSAKLTVPLI 276 >gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae EF01-2] Length = 313 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 +K I R + L P LDII V AGL + A+A V + VR EF+RV+ Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ M + V+ F + ++G NL L + R + ++A Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRA-- 273 Query: 120 QALSMEA 126 + L+MEA Sbjct: 274 EKLAMEA 280 >gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1] gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium SSC/2] Length = 252 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 13/168 (7%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57 H + K +F + I S+ AG + +A+ + + + E + +I Sbjct: 63 HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113 + + + M ++ L+E F+ VIS+ + GGNL E N LS+ ++ ++ Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182 Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161 + + A ME K I+ +P+ + V +PGY ++L G Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226 >gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ L +R + FP+ALD++V AGL + A VA + S + SE V Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L+++ ++ IS +LG ++E L S RD++ A Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 278 EEQAAKLAVK 287 >gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040] gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040] Length = 323 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP-VRSEFRRVIETQH 60 I++R FP+ALD+++ V AG + ++ V VG Q+S P + EF V Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQSI-VRVGKELQASYPELAEEFEIVAHEMK 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 AGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286 Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 A + K + +G ++P ++ L+ + G N+ Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321 >gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC 25986] Length = 308 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/174 (17%), Positives = 84/174 (48%), Gaps = 1/174 (0%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73 + P A + S+ +G ++ + + + +PV +EF RV G+S ++++ ++ Sbjct: 136 EAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISATDALDDLL 195 Query: 74 RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133 + +S + + V + G L++ L+ S ++ +R +K ++ + +A+ SA ++ Sbjct: 196 VRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMV 255 Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 ++P + ++ S + L P G + + A + ++V+R ++ ++ Sbjct: 256 AAMPTGMCAVLALLSADFRRGLAT-PAGAGAVVLGLALNAVALVVIRRIMRVEL 308 >gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2] gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2] Length = 303 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 11/134 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + ++FP+A D+++ V AG+ + A +G+ +D +R + + E H Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTDEIRIKSEALAEELH 192 Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G + +S+ + + E+ F+ +++ + G ++ E+L S LR ++ Sbjct: 193 WTNLEMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252 Query: 114 NMKAKVQALSMEAK 127 M+A+ A + K Sbjct: 253 QMRAEELAAKIPTK 266 >gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC 23779] Length = 301 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IKKR L P+ALD++ SV AGL A+ + + + + EFRR + LG Sbjct: 149 IKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIRLGTQ 208 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 E+ M +++++ F + + QLG ++ + L Sbjct: 209 RHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKML 246 >gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae B-3650] Length = 304 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 8/181 (4%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56 L+++R + F AL + S+ AG V +A + ++ S + EF ++ Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G + I L++++ F+ V + GGNL E + S ++ ++ + Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIG 175 ++ + + K + I+ + P + ++ F+SP YM L R M +G+ F+ + Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYEGAGRLIMTIGLTVLFLCLW 294 Query: 176 I 176 I Sbjct: 295 I 295 >gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 306 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 52/112 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P +DI+ SV AGL A+ + ++ P+ EFR LG E+++R+ Sbjct: 163 LPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSER 222 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++EV F+ I +LG +L L + S+++R + +A + K Sbjct: 223 TEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVK 274 >gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666] gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666] Length = 314 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57 +K+LI +R + + FP+ALD++ V AGL + A+A + +G S + E + V Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G S +++ + + +V ++ + G +++++L S LR ++ +A Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267 Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 + QA AK + ++ L F + S LV P ++ + Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQI 302 >gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme DSM 15981] Length = 308 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/192 (16%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55 + L ++R + +F + + ++ + AG + +AVA ++ + + EF + Sbjct: 117 EDLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEM 176 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 L ++ + L++V+ F+ V + + GG+L E +++ + ++RD+ + Sbjct: 177 ARGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQV 236 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 + ++ ++ I+ +P + + TSPG+ +++ G +++ A I Sbjct: 237 QEEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGIS 296 Query: 176 IMVMRLMINFDV 187 +++ R ++ ++ Sbjct: 297 LLLARRILQVEI 308 >gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614] gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614] Length = 284 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 11/160 (6%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 ++R + + +P A+D + +VRAG+ + DA+A + + +P+R F + + Sbjct: 98 RRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTGRF 157 Query: 66 SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 E + R+ + P+ + I+ + GG L L NLS LRD +++++A Sbjct: 158 GECLDRLKERLADPVGDRVVEGLRIAREVG-GGELGRLLRNLSSYLRDDARTRSELEARQ 216 Query: 124 ME-------AKASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155 A AS W ++ + F + + SPG + VL Sbjct: 217 AWTVNGARLAVASPWLVLLFMSFQSEVIHRYASPGGVLVL 256 >gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 50/98 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R + L+ P+ALD++ + AGL +A+ I + ++ + EF RV+ +G+ Sbjct: 155 IGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMSMGVP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++++ M + +++ F + I LG ++ L Sbjct: 215 RRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVL 252 >gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 302 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57 HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V Sbjct: 144 HLKVKARQLEIFHPLPDILDLVTLCVEAGLSI-DAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + EA A I P L+ F P + V++ Sbjct: 263 E------EAAAKTTIKLIFP-----LIMFIFPALLVVILG 291 >gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK 1622] gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus xanthus DK 1622] Length = 296 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63 +KKR P +LD++ SV AGL + A+A +V + P+R E + V++ +G Sbjct: 141 VKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQLKMGK 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E + M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 201 TREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255 >gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] Length = 300 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S E+ + + R Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMSRREAFTELRRR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267 >gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7] Length = 291 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62 L ++R + L +FP LD+ V AGL + A+ D P+R E R + G Sbjct: 137 LARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADMRAG 196 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ + L V T ++ QLG +L L + S R + ++A+ AL Sbjct: 197 VPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEKLAL 256 Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145 K ++ + FC+ + Sbjct: 257 EAPVK----MLFPMVFCIFPCTF 275 >gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16] Length = 324 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L F + S L+ P ++ + Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM 20745] Length = 307 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 IK+R + + P+A+D++ SV AGL A+ +V + + + EF R++ +G S Sbjct: 154 IKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIRMGQS 213 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 E++ + + +++ F + + QLG ++++ L S+ +R R+ +A+ QA Sbjct: 214 RREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQA--- 270 Query: 125 EAKASAWIIGSLPFCVSTLVY 145 KA +I + F + +Y Sbjct: 271 -HKAPVKMIFPMVFLIFPALY 290 >gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 245 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/196 (16%), Positives = 86/196 (43%), Gaps = 14/196 (7%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51 + +KKR + F + + ++ AG V +A G++ +R E Sbjct: 54 ESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAF----GEALRELRQLYEEDAMIVRE 109 Query: 52 FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 FR ++ + SL + ++ + ++++ F+ + S + GGNL + N + + Sbjct: 110 FRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQ 169 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 ++ + ++ + I+ +P + V SPG+++V+ ++P G +++ + Sbjct: 170 KEETRREINTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLV 229 Query: 172 MLIGIMVMRLMINFDV 187 + + R +++ +V Sbjct: 230 YFLAWLWGRKIVSIEV 245 >gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21] gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21] Length = 302 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 3 HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57 HL +K R + P+ LD++ V AGL + DA + ++ +P+ E R+V Sbjct: 144 HLKVKARQLEIFHTLPDILDLVTLCVEAGLSM-DAALIRTTETPQFRDNPLAIEIRQVTM 202 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ES+ M ++++ F+T+++ + G +LS AL S LR ++ A Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262 Query: 118 KVQA 121 + A Sbjct: 263 EEAA 266 >gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp. M18] gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18] Length = 303 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 15/162 (9%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56 + H +R K P+ LD+I V AGL + DA + ++ +DP+ E + Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSM-DAALIKTTETPQFANDPLAKEIKIAT 201 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G ES+ M + +V F T++S + G +LS+AL+ + LR ++ Sbjct: 202 METRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQM 261 Query: 117 AKVQALSMEAKASAWIIGSLPFCV----STLVYFTSPGYMNV 154 A+ EA A I P + + LV P Y+ + Sbjct: 262 AE------EAAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297 >gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4] gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis MB4] Length = 309 Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/182 (18%), Positives = 81/182 (44%), Gaps = 4/182 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +KR KF F A+ I ++ + +A+ ++ + +P++ E ++++ Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180 Query: 61 LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 G+SL E++ + PL E S V + Q+ N ++ +S +++R K Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFA--GQMKANTADICQKMSAKIKERIRQNNK 238 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178 + + K++ +I ++ + Y + P Y +LL + ++++ + V Sbjct: 239 ISSFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFV 298 Query: 179 MR 180 R Sbjct: 299 FR 300 >gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans DSM 12444] Length = 322 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63 +R + FPN LD+I+ V AGL + D V+ + ++ V R G Sbjct: 164 RRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGA 223 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 + E++ RM + E+ F+T++ +LG ++ L + +R+++ M+A+ +A Sbjct: 224 TREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKA 281 >gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC BAA-613] Length = 245 Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 11/184 (5%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVI 56 +L K+R + F + ++ + AG + + + + + + + + EFR + Sbjct: 55 NLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILS 114 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + E R +++V F+ V+S + GG L E + + I+RD+ +K Sbjct: 115 DGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQVK 174 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----MLLGVAAAF 171 ++ + I+ +PF + + TSPG+ +V+ G L A A Sbjct: 175 EEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGAL 234 Query: 172 MLIG 175 +L G Sbjct: 235 VLAG 238 >gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus taiwanensis LMG 19424] Length = 324 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + +R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++++ + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L F + S L+ P ++ + Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311 >gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279] Length = 254 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P A + S+ +GL ++ A+ + G+S +PVR+EF G+S +++ +V Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135 + + + V + G +L+ L+ + ++ +R + ++ + + + SA ++ Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203 Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 +P + + S + + P G L VA A + +V+R ++ D Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253 >gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp. R11] Length = 327 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I++R + FP+ALD+++ V AG + A+ + + S + EF V Sbjct: 169 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 229 GKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A + ++P + LV ++ G N+ Sbjct: 289 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 322 >gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14] gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14] Length = 295 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083] Length = 296 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 209 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 210 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 263 >gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8] gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 312 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 11/160 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + H I R + + FP+ALD+I+ V +GL + DA VG+ + + Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGL-DAALARVGEEMHVRSPTLGEELHLIN 205 Query: 61 LGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L L S R +R + L +EV ++ + G N+S++L R+ D K Sbjct: 206 LELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSL----RVHADSLRTK 261 Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 ++ A AK + ++ L F + S L+ P ++N+ Sbjct: 262 RRLLAEEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301 >gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1] gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1] Length = 319 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGL 63 I +R L +FP LD++V +RAGL + A+ I + +R EF +V+ G Sbjct: 156 INRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREIRAGK 215 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 S E++ + M L+ +S F ++ + GG + L + R+ + A++ A Sbjct: 216 SRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEIAA 273 >gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 295 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CFBP2957] Length = 314 Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 9/156 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 I++R + FP++LD+I+ V AGL + AV +V + ++ P + E+ + Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTLELRA 212 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL+ +++ + +++VS ++ + G +++E+L S +LR +++M A+ +A Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155 AK I+ L FC+ S V P + V+ Sbjct: 273 ----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304 >gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473] Length = 165 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/134 (18%), Positives = 61/134 (45%) Query: 50 SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109 +EF + +LG + + R E FF++VI + + GG LS+ + + + + Sbjct: 28 NEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGI 87 Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169 + +K + ++ + + + ++ +P + +Y+ P + L + G ++ Sbjct: 88 TESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIV 147 Query: 170 AFMLIGIMVMRLMI 183 ++GI ++R MI Sbjct: 148 ISEILGIFIIRNMI 161 >gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268] gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268] Length = 224 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 KKR + F L I+ + AG + +A+ + + + + V E + + SL Sbjct: 37 KKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKRSL 96 Query: 66 S------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 S E++S+ + ++ FS + V + GG+L + + S I+RD+ + ++ Sbjct: 97 SMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITEEI 156 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 L+ + I+ +PF + + +SP + +L + G ++ L+ I + Sbjct: 157 ITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIYLS 216 Query: 180 RLMI 183 + +I Sbjct: 217 QKII 220 >gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM 43043] gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM 43043] Length = 306 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65 +R + ALD++ V AG DA V V +S+D P+ EF RV+ +G S Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGF-DAALVQVARSTDGPISGEFARVLSEVQIGKSR 209 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 SE+ + + + L +V F + I +LG ++ L + +R + +A+ +A + Sbjct: 210 SEAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVT 269 Query: 126 AKASAWIIGSLPFCV--STLVYFTSPGYMNVLINDPRGHML 164 K I+ L C+ + V PG + ++ G++L Sbjct: 270 VK----ILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306 >gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii] gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii] Length = 318 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I+ R L FP+ALD++V V AGL + D VGQ + E + + Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSL-DVAITRVGQELQLMHRELSEELRALY 212 Query: 61 LGLSLSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 L L S + +R + L+EV F ++ + G ++ +AL + LR R++++ Sbjct: 213 LELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQ 272 Query: 117 AKVQA 121 A A Sbjct: 273 ATEMA 277 >gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 282 EEKANTLPTK 291 >gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108] gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108] Length = 327 Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 V D+V + ++ E + G S++ES + + P QE+ FF ++ V Sbjct: 171 VVDSVEEVKPLVHSSIKEELNKATIKLQQGKSVNESFMSLDKKYPYQELKFFHEMLDVAD 230 Query: 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEA----KASAWIIGSLPFCVSTLVYFTS 148 + GG EAL +++ +RK + ++ A +++ + SA + ++PF V Sbjct: 231 KNGGRNIEALESIAVDFEERKVKQMRLYAETIQGTKAFRNSALTVLAIPFIFKFFV---- 286 Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186 P +L++ P G ++ A +L + ++ + ++D Sbjct: 287 PDAYGMLMSTPLGSIVFVSIACVVLYCYIRIQKLADWD 324 >gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24] Length = 300 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 213 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267 >gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797] gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797] Length = 334 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++ +R + P+ALD+++ + G+P+ A+ + + S + EF +I Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFE-IIR 200 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 S+++++ + + + +V+ S +IS +LG N+S AL + + +R + +A Sbjct: 201 RHADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYM---NVLINDPR 160 + + +K S ++ + FC++ +Y F P + N LI + R Sbjct: 261 EENS----SKTSIKLLFPIIFCMAPPIYILFFGPAVLELRNFLIREHR 304 >gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383] Length = 324 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +K R K +DFP+ALD++ V AGL + A+ + + SS+ V SE ++ Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLLEMRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++A Sbjct: 221 GFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMRA 276 Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 AK + ++ L FC+ P M VL+ H+ Sbjct: 277 EERAAKIALKLLFPLIFCI-------FPALMLVLLGPAMIHV 311 >gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium retbaense DSM 5692] Length = 320 Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62 +KR L FP+ALD++V V AG+ + A++ + +S + E G Sbjct: 164 QKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAG 223 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + +++ + LQ++ +T++ + G ++S+AL S +R + +A+ +A Sbjct: 224 MPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAA 283 Query: 123 SMEAK 127 + K Sbjct: 284 KIPVK 288 >gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24] gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24] Length = 291 Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+ E+ + + R Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 204 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 205 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 258 >gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIETQHL 61 IK R + + FP++LD+I+ V AGL + A+ +V +++ PV + E+ + Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRA 214 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GLS +++ + + +VS ++ + G +++++L S +LR +++M A+ +A Sbjct: 215 GLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294 >gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis HTCC2601] gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601] Length = 323 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R + + FP+ALD+++ V AG + ++ + + S + EF + Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKA 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ M + +VS F TV++ S G ++++AL + +RD++ M+A+ +A Sbjct: 225 GKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKA 284 Query: 122 LSMEAK 127 + K Sbjct: 285 NKLPTK 290 >gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium KLH11] Length = 325 Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 +++R ++ FP+ LD+++ V AG + A+ + + S + EF V Sbjct: 169 VEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + +Q+VS F TV+ + G ++++AL S +RD++ M+A+ A Sbjct: 229 GKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYM 152 + K + A ++ ++P + LV ++ G M Sbjct: 289 NKLPTKMTLATMMLTVPPLLVILVGPSAKGIM 320 >gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000] gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000] Length = 295 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + LG+S ++ + + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + + L +L++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262 >gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1] Length = 90 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 98 LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++E +S ++R+R ++ K+ AL+ + K WI+ S+P + ++ P M +++ Sbjct: 1 MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60 Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187 G++L+ V A ++GI+++R ++N D+ Sbjct: 61 HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90 >gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759] Length = 246 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 43 QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 Q ++ E + +I + + + L +V F+ V +V + GGNL + + Sbjct: 102 QGRSYIQGEIKMIIAGLEMNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMM 161 Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162 + + + +R ++ ++ + + I+ ++PF + + +PGYMN L + Sbjct: 162 KKMVQTIEERLEVEDEIDTMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGN---- 217 Query: 163 MLLGVAAAFMLIGIMVMRLMI 183 + G+AA M + ++V+ LM+ Sbjct: 218 -VFGIAA--MSVCLIVIFLMV 235 >gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi DSS-3] gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria pomeroyi DSS-3] Length = 326 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 4/143 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72 FP+ALD+++ V AG + ++ + + S + EF V G + + M Sbjct: 179 FPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDM 238 Query: 73 VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131 + +VS F TV+ SQ G +++EAL + +RD++ M+A+ A + K + A Sbjct: 239 GTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298 Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154 ++ ++P + LV ++ G M++ Sbjct: 299 MMLTVPPLLIILVGPSAKGIMDL 321 >gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34] gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in Flp pilus synthesis [Cupriavidus metallidurans CH34] Length = 323 Score = 42.0 bits (97), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61 + R ++FP+ +D++ V AGL + A+ + + + PV + E + ++ Sbjct: 161 VTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S +++S + +++V F++++ + G +L E+L LS +LR ++ M+A+ QA Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280 Query: 122 LSMEAK 127 + K Sbjct: 281 AKIALK 286 >gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B] gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B] Length = 323 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60 I++R FP+ALD+++ V AG + A+ V VG+ S + EF V Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQAI-VRVGKELRASYPELAEEFEIVAYEMK 226 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q+V+ F TV+ + G ++++AL + +RD++ M+A+ Sbjct: 227 AGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286 Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154 A + K + +G ++P ++ L+ + G N+ Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321 >gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi] Length = 281 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 +IK + + + D P +D++ +V+ G+ + A V++ + + + R+I Sbjct: 126 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 185 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + + Sbjct: 186 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 244 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 245 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 279 >gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 324 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 A AK + ++ L FC+ + +V P ++V Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311 >gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147] gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786] Length = 318 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 I R ++DFP+ALD++ + AGL + + + + S V E ++ Sbjct: 157 IASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLLEMRS 216 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G S ++ + +++ FS ++ + G ++ +L LS LR ++ M+A+ +A Sbjct: 217 GFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERA 276 Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 AK + ++ L FC+ + L P ++++ Sbjct: 277 ----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 307 >gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP] gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP] Length = 290 Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 +IK + + + D P +D++ +V+ G+ + A V++ + + + R+I Sbjct: 135 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 194 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L SL+ ++ + +P +E+ F TV+ G ++ + L LS +RD + + + + Sbjct: 195 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 253 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M VL N Sbjct: 254 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 288 >gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N] Length = 326 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1] gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1] Length = 309 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + L+ P+ALD++ + AGL A+ I + ++ + EF RV+ +G+ Sbjct: 155 IRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMSMGVP 214 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 ++++ M + +++ F + + LG ++ L Sbjct: 215 RRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVL 252 >gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191] gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191] Length = 296 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLG 62 I+KR L +F +D+ + +GL A I+ + + E +++ LG Sbjct: 139 IQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNEVKLG 198 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 S E++ R+ +QE+ F +I +LG +L + L N S LR R+ KA+ Sbjct: 199 YSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254 >gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC 17029] gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131] Length = 326 Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. NAS-14.1] gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein [Sulfitobacter sp. EE-36] Length = 305 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 7/154 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + +R + FP+ALD+++ V AG + + + + S + EF V Sbjct: 150 VAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEMKA 209 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 210 GKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEEAA 269 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 + K + A ++ ++P L+ +P MN+ Sbjct: 270 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 300 >gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168] gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168] Length = 283 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/159 (20%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVI 56 K +I R + +D P +DI+ V++G+ + + + + ++++ + + R ++ Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYL-AENTETINPDISVLLARTIM 182 Query: 57 ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 + + G+S E++ + +P QE+ ++ + + G ++ L +LSR +R+ + + Sbjct: 183 KMEVSGMS--EALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLA 240 Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + S+ AK S +I + F + LV PG + ++ Sbjct: 241 IDEKISSLAAKMSLPMIICIMFPI--LVLVAGPGVIRIV 277 >gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 296 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%) Query: 4 LIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59 L++ A+ DD P+ LD++ V AGL A+ + + + P E R + Sbjct: 134 LLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQM 193 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 +G+ E+ ++ R ++VS F + + +LG + + L ++ +R A+ Sbjct: 194 DMGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARR 253 Query: 120 QALSMEAKAS 129 +A KA+ Sbjct: 254 KAAKAVPKAT 263 >gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter denitrificans OCh 114] gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter denitrificans OCh 114] Length = 355 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 195 VDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 254 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A Sbjct: 255 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAA 314 Query: 122 LSMEAKAS 129 + K + Sbjct: 315 NKLPTKMT 322 >gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12] Length = 322 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57 +++L +R + FP+ALD++V AGL + A+ + + S + SE V Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ ++ L ++ ++ IS +LG ++ L S RD++ +A Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 280 EEQAAKLAVK 289 >gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis SB2B] Length = 287 Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59 + L + R + + P LD + ++ AGL +S A+A V + D P++ EF +VI Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---ANLSRILR----DR 112 G+S +++ M + + E++ + ++ + G +L L A+ R+ R ++ Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250 Query: 113 KNMKAKVQ 120 K M+A ++ Sbjct: 251 KAMEAPIK 258 >gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum SI] Length = 307 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 15/164 (9%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R + P+ +D++ SV AGL A+ + + + EF ++++ +G E Sbjct: 157 RKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIKIGRPRLE 216 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 ++ + R + + ++S F+ + + QLG + + N+ R+ D+ MK + A M K Sbjct: 217 ALRDLSRRLDVDDLSAFAGAVILADQLGIS----IGNILRVQSDQIRMKRRQAAEEMAMK 272 Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171 A ++ +P +V F P VL+ G ++ ++ AF Sbjct: 273 APVKML--IP-----MVLFIFPAIFVVLL----GPAVIQISKAF 305 >gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS] gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS] Length = 295 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64 KKR L P LD+I +AGL ++ A+A V + + EF R++ G+S Sbjct: 143 KKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREMRTGVS 202 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++++ M + + + + ++ LG +L++ L+ +S R + A + L+M Sbjct: 203 RMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHA--EKLAM 260 Query: 125 EA 126 EA Sbjct: 261 EA 262 >gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM 2661] gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 299 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++ Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GG+LS++L L++ L D K K ++ +++ A Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIG 202 Query: 131 WII--GSLP 137 +II G +P Sbjct: 203 FIILCGVIP 211 >gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein [Roseovarius nubinhibens ISM] Length = 323 Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70 D FP++LD+++ V AG + ++ + + S + E++ V + G + ++ Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231 Query: 71 RMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 M +Q++S F TV+ VQSQ G ++ +AL + +RD++ M+A+ +A + K + Sbjct: 232 EMGDRCGVQDISSFVTVL-VQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMT 290 Query: 130 AWIIG 134 +G Sbjct: 291 LCTMG 295 >gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 320 Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 +++R ++ + FP+ +D+++ AG+ + + + + + P S+ +++ + Sbjct: 167 VRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A Sbjct: 227 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEKA 286 Query: 122 LSMEAKASAWII 133 ++ AK S ++ Sbjct: 287 HALPAKMSVPVV 298 >gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599] gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 66/138 (47%) Query: 45 SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 S+ V E+RR++E + L ++R +V + +T++ +Q ++GG++++ L Sbjct: 152 SEIVLEEYRRIVELLRAQVPLEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDL 211 Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 + + R+ + +A + A ++ +PF +Y +P + + L G L Sbjct: 212 AASSILRRRQSLRRQKAAMAQIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFL 271 Query: 165 LGVAAAFMLIGIMVMRLM 182 + + A +LIG +R + Sbjct: 272 ILGSLASILIGGEAIRFV 289 >gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus voltae A3] gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3] Length = 294 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62 L + + KF + P AL I+V S+ +G V +++ I+ V F ++I Sbjct: 73 LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 LS +S+ + + + +I + GGNL+E+L L++ L D N+K Q L Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKN--QLL 190 Query: 123 SMEAKASAWIIGSLPFCV 140 S+ + + +G + C+ Sbjct: 191 SVASNGLS--VGIIILCI 206 >gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM 11548] Length = 256 Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRY 75 P L ++ +V AG+ + +A V+ G P + FRRV+ + GL++ E++ R+ Sbjct: 42 PQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEALWRVASE 101 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 +P F+ +++ ++ G L E L +R Sbjct: 102 LPSPNFRRFALIVAEGARSGARLGEVLGVAAR 133 >gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE] gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE] Length = 295 Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 57/129 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ I +R P+ LD++ V AGL A+ + + S P E R + Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 +G+S E+ ++ + ++VS F + + +LG + + L ++ +R A+ + Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253 Query: 121 ALSMEAKAS 129 A KA+ Sbjct: 254 AAKAVPKAT 262 >gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6] Length = 285 Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKRTA +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S+ ++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213 Query: 120 QA 121 +A Sbjct: 214 EA 215 >gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens] gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens] Length = 200 Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60 + KR + L+ IV V AG V A+ Q P+ E R+I+ Sbjct: 47 VDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLE 106 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S +S + +QEVS F+T + + + GG + + AL +LSR L +++ + Sbjct: 107 GGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRT 166 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152 + E +S + + + +V +P +M Sbjct: 167 RG---EQASSKLVFPMMVIFMIVIVLVGTPAFM 196 >gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein [Shewanella sediminis HAW-EB3] gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related transmembrane protein [Shewanella sediminis HAW-EB3] Length = 321 Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 ++ + +R FP+ALD++V AGL + A VA + S + SE V Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 GL++ +++ L+++ ++ IS +LG ++E L S R+++ +A Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278 Query: 118 KVQALSMEAK 127 + QA + K Sbjct: 279 EEQAAKLAVK 288 >gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum ATCC 824] gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA 2018] Length = 396 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 29 AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88 AG + ++++++ D + RR+I+ G+ SI + V+Y FF +++ Sbjct: 74 AGFNICESLSIMY----DKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPYFFKSML 129 Query: 89 SVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144 + + GNLSE NL +D+ + K++ A + A A+ I L F VS ++ Sbjct: 130 FIGEE-SGNLSEVFRNLGEYYKDQWKTEEKIKNATTYPAIVFAFTIIILVFLVSKVI 185 >gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641] Length = 282 Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIET 58 K+++ R K D P +D++ V++GL + ++ + VG +D R+++ Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185 Query: 59 QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + L ++ + + +P +EVS + + G ++ E L LS +R+ + +K + Sbjct: 186 IEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTE 244 Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155 + AK S ++ L F ++ +PG M V+ Sbjct: 245 EIIGKLSAKMSIPLV--LFFMFPVVIIIAAPGIMRVM 279 >gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7] gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7] Length = 286 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64 +K+ A+F + P LD+ +++ LPV+ A+ I +S D + S E R + LG S Sbjct: 135 QKKKAQFESEIPRFLDLFQTAIKINLPVATAIK-ITAESIDGILSEELLRALVVTELGTS 193 Query: 65 -LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 +S+ + + + S F I Q G +++E++ SR ++ + AK QA Sbjct: 194 NWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQA-- 251 Query: 124 MEAKASAWII 133 AK ++ I+ Sbjct: 252 --AKTTSLIL 259 >gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides 2.4.1] Length = 326 Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57 +K ++R + + FP+ALD+++ V AG + ++ + +S+ + EF V Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G + M + + +VS F T + + G +++EAL S +RD++ M+A Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284 Query: 118 KVQALSMEAK 127 + +A ++ K Sbjct: 285 EEKANTLPTK 294 >gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599] Length = 298 Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59 ++ L +RT + P LDII ++ AG ++ A+ V + + P+ E RRV+ Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G + +ES+ + + + +S + I + G +L L + R+ + M+A+ Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259 Query: 120 QALSMEAK 127 AL K Sbjct: 260 MALKAPVK 267 >gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein [Oceanicola batsensis HTCC2597] Length = 330 Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%) Query: 2 KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54 K+ I KR A+ ++ FP+ALD+++ V AG + A+ + + S + EF Sbjct: 156 KYWINKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFEL 215 Query: 55 VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 V G + + M + +++ F TV+ + G ++++AL + +RD++ Sbjct: 216 VSHEIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRV 275 Query: 115 MKAKVQALSMEAK 127 M+A+ +A + K Sbjct: 276 MRAEEKANKLPTK 288 >gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA] Length = 259 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67 +F L + S+ AG + +AV + D +R+ + + V+E + GL +++ Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135 Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119 I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A ME K I+ +PF + V +PGY VL + P G +L Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236 >gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662] Length = 259 Score = 41.2 bits (95), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%) Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67 +F L + S+ AG + +AV + D +R+ + + V+E + GL +++ Sbjct: 80 EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135 Query: 68 SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119 I ++ M L+ E S F+ V+ + + GGNL +++ ++++ ++ ++ + V Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195 Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164 A ME K I+ +PF + V +PGY VL + P G +L Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236 >gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1] Length = 318 Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 14/160 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 M L++ R K +D P+ALD++ V AGL + A V +G S ++ EF V+ Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G +++ + ++++ + ++ + G ++ ++L + LR ++ ++A Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 + A + K + L++F P + VL+ Sbjct: 270 EELAAEIALK-----------LLFPLMFFIFPTLLAVLVG 298 >gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/116 (23%), Positives = 52/116 (44%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 + +KKR + L +FP +++ S+ AG DA+ + ++ + E R + Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116 G SL +++ M R +Q + F +++ G LSE L + +R+ K Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRK 272 >gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia solanacearum CMR15] Length = 315 Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61 IK R + + FP++LD+I+ V AGL + A+ +V + ++ PV + E+ + Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRA 214 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 GL +++ + + +VS ++ + G +++++L S +LR +++M A+ +A Sbjct: 215 GLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274 Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145 AK ++ L FC+ +Y Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294 >gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 324 Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 6 KKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60 K RT + L D P+ALD++V V AG+ + A+ + + SS + E ++ Sbjct: 165 KVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELR 224 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + SES+ + + L++V+ T+I G +++ L S +R + +A+ Sbjct: 225 AGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEI 284 Query: 121 ALSMEAKASAWIIGSLPFCV 140 A M K ++ L FC+ Sbjct: 285 AAKMPVK----LLFPLVFCI 300 >gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B] gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B] Length = 286 Score = 40.8 bits (94), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +P+ +D + +VRAGL + +AVA + + D +R FRR + + + + S+ + R Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169 Query: 76 MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120 + + + ++GG +L L LS LR+ ++A+++ Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELE 215 >gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis Re117] gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter arilaitensis Re117] Length = 313 Score = 40.8 bits (94), Expect = 0.078, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R K L FP +++ +V AG + A+ I + EF + + H G Sbjct: 162 INRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIHAGTP 221 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMK-AKVQ 120 + +++ M M + ++ F I V ++ G L++ L + ++ +RD R+ M+ A + Sbjct: 222 MVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRDASKRELMEVAGKR 281 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150 +SM + G LP T+V+ PG Sbjct: 282 EISMLVPV---VFGILPL---TIVFAVFPG 305 >gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative [Oceanibulbus indolifex HEL-45] Length = 326 Score = 40.8 bits (94), Expect = 0.081, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIE 57 + + R + FP+ALD+++ V AG + D V VG+ S + EF V Sbjct: 165 RRRVDSRKEEITRGFPDALDMMLVCVEAGQSL-DQCIVRVGRELRASYPALAEEFEMVAY 223 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117 G ++ M +Q+VS F TV+ + G ++++AL + +RD++ M+A Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283 Query: 118 KVQALSMEAKASAWIIG 134 + A + K + +G Sbjct: 284 EEAANKLPTKMTLATMG 300 >gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM 574] Length = 310 Score = 40.8 bits (94), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I++R + P+ALD++ SV AGL A+ + QS+ + EF +++ H+G Sbjct: 157 IRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECHMGKP 216 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNL 98 E++ M + + ++S F I + LG GN+ Sbjct: 217 RREALRDMADRVDVDDLSTFCGSIILADTLGISIGNI 253 >gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424] gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054] gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424] Length = 324 Score = 40.8 bits (94), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A AK + ++ L FC+ P M VL+ H+ Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311 >gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX] gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX] Length = 273 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 +KR + P+ LD++ +V AGL A+A + + SEF+ + LG S Sbjct: 118 RKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTSR 177 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALS 123 ++ + + + + F T + +LG LS+ L LS +R D + ++ K Q L+ Sbjct: 178 RDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHLN 237 >gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp. FS406-22] Length = 299 Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V FR+V+ E Q LS ES++ Sbjct: 85 NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GG+L+++L L++ L D K K ++ +++ AS Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVT----ASG 198 Query: 131 WIIGSLPFC 139 IG + C Sbjct: 199 LAIGFIILC 207 >gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3] Length = 324 Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 +K R K +DFP+ALD++ V AGL + DA + V + S+ V SE ++ Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163 A AK + ++ L FC+ P M VL+ H+ Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311 >gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum DSM 20595] gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 291 Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 7 KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65 + T++ L P+ +++I +V AG PV A+ V S P+ R + H G SL Sbjct: 142 RATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSL 201 Query: 66 SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104 ++S + Q VS F+ + + GG L++ L N Sbjct: 202 PAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHN 240 >gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily [Rhodobacterales bacterium HTCC2083] gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily [Rhodobacteraceae bacterium HTCC2083] Length = 323 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 I R + FP++LD+++ V AG + ++ + + S P + E+ V + Sbjct: 167 IDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ M +Q+V+ F TV+ + G +++EAL + +RD++ M+A+ +A Sbjct: 227 GKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 286 Query: 122 LSMEAKAS 129 + K + Sbjct: 287 NKLPTKMT 294 >gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative [Roseobacter litoralis Och 149] Length = 327 Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61 + R + FP++LD+++ V AG + + + + S + EF V Sbjct: 167 VDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 226 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + ++ +Q+VS F TV++ Q G +++EAL + +RD++ M+A+ A Sbjct: 227 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAA 286 Query: 122 LSMEAKAS 129 + K + Sbjct: 287 NKLPTKMT 294 >gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem] gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem] Length = 304 Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAV---AVIVGQSSDPVRSEFRRVIETQHLGL 63 ++TA F P+ LD++ V AGL + A+ A + + P+ +EF VI G Sbjct: 151 RKTAIF-HALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGR 209 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123 SE++ + L ++ +++ +LG +L + L S LR ++ A+ +A Sbjct: 210 PRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERA-- 267 Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156 AK + ++ L FCV P +M VL+ Sbjct: 268 --AKTAVKMLFPLTFCV-------FPAFMVVLL 291 >gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70] Length = 284 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 4 LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60 ++K + K + D P +D++ +V+ G+ + A VA+ + + + R+I Sbjct: 129 ILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 188 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 L LS+++ + +P E+ F TV+ G ++ L LS +R+ + + + + Sbjct: 189 LT-GLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEEK 247 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 ++ AK S +I + F + L+ +PG M V N Sbjct: 248 LGTLSAKMSIPLILFIMFPIIILIL--APGIMRVFPN 282 >gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100] Length = 258 Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPV-RSEFRRVIETQHLG 62 K+R D P +D++ SV AGL A+ IV ++ +D V EF V++ +G Sbjct: 104 KRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKIG 163 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS---RILRDRKNMKAKV 119 S ++++ M + + E++ F V+ G ++S+ L + S R+ R + KA Sbjct: 164 SSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAGA 223 Query: 120 QA 121 QA Sbjct: 224 QA 225 >gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter lacuscaerulensis ITI-1157] Length = 327 Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 +++R FP+ LD+++ V AG + A+ + + SS P + EF V Sbjct: 169 VEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKA 228 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G ++ + +Q+VS F TV+ + G ++++AL + +RD++ M+A+ A Sbjct: 229 GKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288 Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMN 153 + K + A ++ ++P + LV ++ G M Sbjct: 289 NKLPTKMTLATMMLTVPPLLIILVGPSAKGIME 321 >gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063] Length = 295 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + R Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + V + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus okinawensis IH1] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64 + + KF + P AL +++ S+ +G V DA+ ++ V F +++ LS Sbjct: 77 ESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLS 136 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 +SI + + + +I + GG L+E L L++ L D +N+K ++ +++ Sbjct: 137 FEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTA 196 Query: 125 EAKASAWII--GSLPFCVSTLVYFTSPGYMNVL 155 A II G +P + GY+N + Sbjct: 197 NGLAVGLIIICGVIPATAGII-----GGYLNAI 224 >gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1] Length = 238 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 83 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 197 >gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 +PN +D +V VRAGL + + + + ++ +R F G +L S+ + R Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177 Query: 76 MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134 + + + +Q+GGN L L +L +LR + + +V A A + Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237 Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181 + P+ + L+ + PG + V + P G M+L V A L +M++RL Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283 >gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3] gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3] Length = 293 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 17 PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75 P LD + +V AGL ++ A+ V + D +RSEF V+ GL+ ++++ R Sbjct: 151 PVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALRRFDER 210 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126 ++E++ F + ++G L+ L S R + +A + L+MEA Sbjct: 211 QDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRA--EKLAMEA 259 >gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209] Length = 161 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 49/95 (51%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I +R A+ L +FP+ +++ +VRAG + A+ + S + EF R++ G+ Sbjct: 3 ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99 L+E+++ R + + F+ ++V + G L+ Sbjct: 63 LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLA 97 >gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL 11379] gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 50/114 (43%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + + P E R + +G+S ++ + R Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVSRRQAFEELRRR 208 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 ++V+ F T + +LG + E L ++ +R A+ +A KA+ Sbjct: 209 NDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262 >gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C] gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C] Length = 292 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75 P+ LD++ V AGL A+ + G+ P E R ++ +G+S ++ + R Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVSRRQAFDELRRR 204 Query: 76 MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114 ++V+ F T + +LG + E L ++ +R D +N Sbjct: 205 NDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQN 245 >gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella vestfoldensis SKA53] Length = 316 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 ++ R ++ FP++LD+++ V AG + ++ + + + P + EF V + Sbjct: 161 VEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKA 220 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G + + M + ++S F TV+ +Q G ++S+AL + +RD++ M+A+ A Sbjct: 221 GKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAA 280 Query: 122 LSMEAK 127 + K Sbjct: 281 NKLPTK 286 >gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella aurantiaca DW4/3-1] Length = 296 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63 +K+R P LD++ SV AGL + A++ +V + S P++ E V++ +G Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200 Query: 64 SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118 + E++ M+ + L ++ F T + ++G +L + L S +R + +A+ Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255 >gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1] gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis KOD1] Length = 351 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 47/105 (44%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61 K + K+R + P AL I + AG+ +++A+ + P+ EF VI Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106 G S E++ + M + VS I + GGNL+E L L+ Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLA 269 >gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44] gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44] Length = 303 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 11/134 (8%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ + +R + ++FP+A D+++ V AG+ + A +G+ ++ +R + + E H Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTEEIRIKSEALAEELH 192 Query: 61 L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113 G + +++ + + E+ F+ +++ + G ++ E+L S LR ++ Sbjct: 193 WTNLEMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252 Query: 114 NMKAKVQALSMEAK 127 M+A+ A + K Sbjct: 253 QMRAEELAAKIPTK 266 >gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1] Length = 401 Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%) Query: 27 VRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85 +RAG+PV +A ++ Q+ S P++ +V E G++ S++ + + PL V+ Sbjct: 75 IRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPLLFVNMMR 134 Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST-LV 144 + GN+ + L L+ L + N+K K+Q+ A I+ L V L+ Sbjct: 135 A-----GEATGNVDDTLDRLASTLEKQYNIKKKIQS----AMTYPAILSLLTLVVGMFLM 185 Query: 145 YFTSPGYMN 153 F P +M+ Sbjct: 186 VFIVPTFMD 194 >gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353] Length = 191 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQHLGLSLSES 68 F N L ++ S++AG ++++ + + + ++P+ + RR+I+ L ++L + Sbjct: 49 FQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIALEQL 108 Query: 69 ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 L+E F+ VI + GGN+ E L + L+ + + + +++ L Sbjct: 109 FMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL 162 >gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter sp. SK209-2-6] Length = 322 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61 +++R K FP++LD+++ V AG + ++ + + +S P + EF V + Sbjct: 164 VEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKA 223 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120 G + + M +Q++S F TV+ +QSQ G ++++AL + +RD++ M+A+ Sbjct: 224 GKDKEKVLRDMGTRCGVQDISSFVTVM-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEA 282 Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154 A + K + A ++ ++P + LV + G +N+ Sbjct: 283 ANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNM 317 >gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50] Length = 301 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/193 (19%), Positives = 84/193 (43%), Gaps = 14/193 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIET 58 I+KR + +F + + + S+ AG +A + S + E + VI Sbjct: 113 IEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIR- 171 Query: 59 QHLGLSLSESISRMVRYMP----LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 GL + E I +++ M ++E+S F+ V+ V + GGN+ + + + + Sbjct: 172 ---GLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKME 228 Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174 ++ ++Q + K I+ +PF + + + Y+++L + G +++ + A ++ Sbjct: 229 VELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSIL 288 Query: 175 GIMVMRLMINFDV 187 R MI V Sbjct: 289 SAAWSRKMIRIGV 301 >gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099] gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099] Length = 305 Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust. Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61 ++++ ++ + FP+ +D+++ AG+ + + + + + P S+ +++ + Sbjct: 151 VREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 210 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 G SL +++ + + L EV F+T++ +LG +LS AL S +R ++ A+ +A Sbjct: 211 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKA 270 Query: 122 LSMEAKAS 129 ++ AK S Sbjct: 271 HALPAKMS 278 >gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans Sphe3] Length = 285 Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 ++ KKR+A +P+ +D + ++RAGLP+ +A+ + + + +R FR Sbjct: 94 LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119 G S++++ + + + ++GG +L + L L+ LR+ ++++ Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213 Query: 120 QA 121 +A Sbjct: 214 EA 215 >gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 270 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 8/192 (4%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVS-------DAVAVIVGQSSDPVRSEFRRV 55 +L+++R F AL + S+ AG V D + ++ + V E + Sbjct: 80 YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139 Query: 56 IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115 G + E++ R ++++ F+ V + + GG+L E + S ++ ++ + Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199 Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175 ++ + + + A + + P + FTSP YM L + G ++ GVA I Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258 Query: 176 IMVMRLMINFDV 187 +M +I+ V Sbjct: 259 AWLMLKIIDIRV 270 >gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681] gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 290 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60 ++KR + L + P L ++ V AG V A+ V + P+ E R+ + Sbjct: 137 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTVAEWE 196 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114 G S ++ + + +QE++ F+T + + + GG + AL LS+ L ++ Sbjct: 197 SGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRT 251 >gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101] gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101] Length = 320 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGL---PVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 K R + FP+ L++IV + AGL P VA + S + E +++ + Sbjct: 165 KNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMT 224 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 + ++M +PL E+ F+ + + G S A+ L I+ R N + + Sbjct: 225 NDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTL--IIEQRGN-----RLM 277 Query: 123 SMEAKASAW-IIGSLP--FCV--STLVYFTSPGYMNVLIN 157 ++E KA+ ++ +LP FC+ + V P ++VL N Sbjct: 278 AIEEKAARLPVLMTLPLIFCIMPAVFVVLVGPAVLSVLDN 317 >gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus XylebKG-1] Length = 295 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 53/125 (42%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 I+ R P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + E L ++ +R A+ +A Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257 Query: 125 EAKAS 129 KA+ Sbjct: 258 VPKAT 262 >gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1] Length = 320 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 +K+ I+KR+ K P+ALD+ V AGL + DA V + P E Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSL-DAALARVSREIGPAAPEL-----ADE 213 Query: 61 LGLSL---------SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111 LGL+ E++ + R + +V + + G L++AL L+ RD Sbjct: 214 LGLTAVELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRD 273 Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLIN 157 + MKA+ +A + A + +I F + L V P + VL Sbjct: 274 TRMMKAEEKAARLPATLTVPMIA---FILPPLFVVLIGPAIVQVLTT 317 >gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74] gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74] Length = 300 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/127 (21%), Positives = 57/127 (44%) Query: 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62 +++R A P+ LD++ V AGL A+ + + P E R + +G Sbjct: 141 QAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMG 200 Query: 63 LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122 +S ++ + R ++V+ F + + +LG ++E L ++ +R +A+ +A Sbjct: 201 VSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAA 260 Query: 123 SMEAKAS 129 KA+ Sbjct: 261 KTIPKAT 267 >gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces flavogriseus ATCC 33331] Length = 295 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 54/125 (43%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64 ++KR P+ LD++ V AGL A+ + + P E R + +G+S Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197 Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 ++ + R ++V+ F T + +LG + + L ++ +R A+ +A Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257 Query: 125 EAKAS 129 KA+ Sbjct: 258 VPKAT 262 >gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158] Length = 324 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Query: 5 IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60 + R K +DFP+ALD++ V AGL + DA + V + SD V E ++ Sbjct: 161 VAARQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSDVVAGELDLLLLEMR 219 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 G + ++ + ++++ F ++ + G ++SE+L R+L D + +++ Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDLLRTRRRMR 275 Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154 A AK + ++ L FC+ + +V P ++V Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311 >gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631] Length = 617 Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 8 RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67 R +++ F N L I S G+P+ A++++ + P+R E R++ GL LS Sbjct: 409 RYLRYIPIFFNRLATINES---GVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSR 465 Query: 68 SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 + R + + +V+ T+++ + GNL+E L Sbjct: 466 AFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVL 500 >gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile QCD-76w55] Length = 317 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%) Query: 2 KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59 K L KR K + + II+ + +S ++ + Q S+P+ SE ++ + Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS--EALANLSRILRDRKNMKA 117 LG+ + E +S + R + + FS V S L S + L D + +K Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246 Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRGHM-LLGVAAAFML 173 ++ M ++I + F + L+ F S GY++ +IN+ G M L G+ + +L Sbjct: 247 DLRKEIMGPVRESYI---MVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILL 303 >gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3] Length = 295 Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 6 KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHL 61 + + KF + P AL ++ S+ +G V++A+ ++ + V EF + +IE ++ Sbjct: 76 EGKIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYS 135 Query: 62 GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121 +I+ M +++ +I + Q GG L+ L L++ L D N+K ++ Sbjct: 136 FEDAMTTITENSDSMVFRQIG--RLIIENRKQ-GGELASTLRTLAKTLEDLMNIKQQL-- 190 Query: 122 LSMEAKASAWIIGSLPFC 139 + A+ ++G + C Sbjct: 191 --LSTTANGLVVGLVILC 206 >gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus vulcanius M7] Length = 301 Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 69/129 (53%), Gaps = 7/129 (5%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70 ++ P AL I++ ++ +G +++A+ +V + V + F++V+ E Q + S E+++ Sbjct: 87 NNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQKI--SFEEAMT 144 Query: 71 RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 + + + + ++ + GGNL+++L L++ L D + K ++ +++ A Sbjct: 145 IVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVG 204 Query: 131 WII--GSLP 137 +II G +P Sbjct: 205 FIILCGVIP 213 >gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201] gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201] Length = 285 Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 7 KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66 +RTA + +P+ +D + ++RAG+ + +A+ + + +P+R F R L Sbjct: 100 RRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYRASGQLH 159 Query: 67 ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125 S++ + + + + V ++GG +L + L LS LR+ + +++++A Sbjct: 160 GSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEARQSW 219 Que