BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (187 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 187

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH
Sbjct: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ
Sbjct: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR
Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180

Query: 181 LMINFDV 187
           LMINFDV
Sbjct: 181 LMINFDV 187


>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 328

 Score =  306 bits (783), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/186 (76%), Positives = 173/186 (93%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH
Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ
Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L  D RGH++LG+AA  M++G ++MR
Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321

Query: 181 LMINFD 186
            MINFD
Sbjct: 322 TMINFD 327


>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
          Length = 335

 Score =  254 bits (648), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 115/184 (62%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH ++G +A +M IGI+VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 335

 Score =  252 bits (644), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 335

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q +GL
Sbjct: 152 LIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQALS
Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 335

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q +GL
Sbjct: 152 LIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 335

 Score =  251 bits (640), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
          Length = 335

 Score =  250 bits (639), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
 gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
          Length = 335

 Score =  249 bits (636), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRR+IE Q +GL
Sbjct: 152 LIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV ALS
Sbjct: 212 SIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M+
Sbjct: 272 MEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 336

 Score =  248 bits (634), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/183 (60%), Positives = 152/183 (83%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL+
Sbjct: 154 IKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLN 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALSM
Sbjct: 214 VPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALSM 273

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G +A +M IGI +MR MIN
Sbjct: 274 EAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMIN 333

Query: 185 FDV 187
           FD+
Sbjct: 334 FDI 336


>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 336

 Score =  248 bits (633), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PV++EFRRV+E+Q +GL
Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS
Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
 gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 336

 Score =  248 bits (632), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 336

 Score =  247 bits (630), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 335

 Score =  247 bits (630), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIK+R  KFL++FPNALD+I RS+R+GLP++DAV ++  ++ +PVR+EFRRV+ETQ +GL
Sbjct: 152 LIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVGL 211

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S++++ +RM  +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV ALS
Sbjct: 212 SMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVALS 271

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V  LVY TSP YM +L  DPRGH+++ +A  +M  G+++MR M+
Sbjct: 272 MEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQMV 331

Query: 184 NFDV 187
           NFD+
Sbjct: 332 NFDI 335


>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 334

 Score =  244 bits (623), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 151/184 (82%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++R  KFL +FPNALD++VRS+++GLP++DA+ +I   + +PV++EFRRV++ Q LG+
Sbjct: 151 LIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQLGI 210

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+  RM   MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV ALS
Sbjct: 211 TVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVSALS 270

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+ LVY +SP Y+ VL  DPRGHM+LG +A +M IGI VMR MI
Sbjct: 271 MEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMRNMI 330

Query: 184 NFDV 187
           NFD+
Sbjct: 331 NFDI 334


>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 334

 Score =  241 bits (614), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/184 (59%), Positives = 150/184 (81%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q +G+
Sbjct: 151 LLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + + I RM+  MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV ALS
Sbjct: 211 GIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALS 270

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V  LV+FTSP Y+++L  D RGH++LG +A +MLIGI +MR MI
Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMI 330

Query: 184 NFDV 187
           NFD+
Sbjct: 331 NFDI 334


>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 334

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 151/184 (82%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q +G+
Sbjct: 151 ILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGI 210

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + + I RM+  +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV ALS
Sbjct: 211 GIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALS 270

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V  LV+FTSP Y++VL  D RGH++LGV+  +MLIGI +MR MI
Sbjct: 271 MEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMRQMI 330

Query: 184 NFDV 187
           NFD+
Sbjct: 331 NFDI 334


>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
          Length = 336

 Score =  233 bits (595), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 142/185 (76%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H  K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +G
Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL
Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V  LVY TSP YM +L     GHMLLGVAA  ML GI +M+ M
Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331

Query: 183 INFDV 187
           INFD+
Sbjct: 332 INFDM 336


>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
 gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
          Length = 336

 Score =  233 bits (594), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 148/185 (80%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L  +R   FL +FPNALDI+VRS+++GLP++DA+ +I  +  +PVR+EF+R++++Q +G
Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +++ E+ +R+   +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL
Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+ LVY TSP Y+ +L  D RGH++LG +A +M IGI+VMR M
Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331

Query: 183 INFDV 187
           INFD+
Sbjct: 332 INFDI 336


>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
          Length = 337

 Score =  233 bits (593), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 141/182 (77%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +GLS+
Sbjct: 156 KRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLSI 215

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSME
Sbjct: 216 PEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSME 275

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AKASA IIG+LPF V  LVY TSP YM +L     GHMLLG+AA  ML GI +M+ MINF
Sbjct: 276 AKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMINF 335

Query: 186 DV 187
           D+
Sbjct: 336 DM 337


>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
 gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
          Length = 337

 Score =  228 bits (582), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 143/181 (79%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q +G+S+ 
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQMGISIP 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           KASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG AA +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMRKMMNFE 336

Query: 187 V 187
           V
Sbjct: 337 V 337


>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 337

 Score =  228 bits (580), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 146/185 (78%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PVR+EFRR++E Q LG
Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L ++E+  RM   MP  EV+FF  V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL
Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LP  V+ LVY TSP Y+  L ++  GH++LG++A +M IGI VMR M
Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332

Query: 183 INFDV 187
           +NF+V
Sbjct: 333 MNFEV 337


>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 337

 Score =  227 bits (579), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/181 (59%), Positives = 143/181 (79%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PV++EFRR++++Q +GLS+ 
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQMGLSIP 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEA 276

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           KASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336

Query: 187 V 187
           V
Sbjct: 337 V 337


>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 337

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/181 (59%), Positives = 142/181 (78%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q +GLS+ 
Sbjct: 157 RRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMGLSIP 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV ALSMEA
Sbjct: 217 DATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEA 276

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           KASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR M+NF+
Sbjct: 277 KASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKMMNFE 336

Query: 187 V 187
           V
Sbjct: 337 V 337


>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 335

 Score =  221 bits (564), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 144/182 (79%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR   F + FP A+D+IVR V+AGLP++D +  +V    DPV SEF++V+E Q +G++L
Sbjct: 154 KKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQMGVTL 213

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++  R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+QA+SME
Sbjct: 214 GDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSME 273

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AKASA IIGS+P  V++++Y TSP Y+NVL++DPRG+++L  +A +MLIG+++M+ MINF
Sbjct: 274 AKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMKKMINF 333

Query: 186 DV 187
           D+
Sbjct: 334 DI 335


>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 335

 Score =  218 bits (556), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 141/181 (77%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q +G+ +
Sbjct: 154 KKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQMGVPI 213

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE++ ++ R +P  E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQA+SME
Sbjct: 214 SEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSME 273

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AKAS  IIG+LP  V+ LVY T+P Y++VL     GH++L V+  +M  G+ VM+ MI+F
Sbjct: 274 AKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMKKMISF 333

Query: 186 D 186
           D
Sbjct: 334 D 334


>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/186 (54%), Positives = 139/186 (74%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFLD  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q
Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  +VYF SP Y+++L  +P G ++L V+ A+M  G+M+M+
Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318

Query: 181 LMINFD 186
            MINFD
Sbjct: 319 KMINFD 324


>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 326

 Score =  214 bits (546), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 135/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KF+++FP ++D+I+R V+AGLPV+D   VI  +  +PVR EFRR+IE+Q 
Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E++ R    +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+
Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   VY T+P YM VL     G +++     +M IG+ +MR
Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 320 KMINFDI 326


>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
 gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
          Length = 323

 Score =  207 bits (528), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 136/186 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL+  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q
Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LP  V  +VY  SP Y+++L   P G  +L   A +M  GI+VM+
Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316

Query: 181 LMINFD 186
            MINFD
Sbjct: 317 KMINFD 322


>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 324

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  KFL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 340

 Score =  204 bits (518), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 135/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KFL   P+A+D+IVR ++AGLP+ +++ V+   S +P+RSEF  +IETQ 
Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q
Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G ++L     +M +GIMVM+
Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 KMINFD 339


>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 328

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 140/186 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +LIK+R   F ++F NA+D+IVR V++GLPV+D + +I  +S +PVR+EF+ ++E Q 
Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L + ++++   MPL EV+FF  V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q
Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLP  V  L+YF+SPGYM+VL +   G+M++     +M IG++VM+
Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321

Query: 181 LMINFD 186
            MI+F 
Sbjct: 322 KMIDFK 327


>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
 gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
          Length = 322

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 138/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R AKF++ FP ++DII+R ++AGLPV D   +I  ++ +PVRSEFR+++E+Q 
Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E+  R    MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+
Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   V+FT+  YM VL +   G+M++  +  +M +G+ +M+
Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315

Query: 181 LMINFDV 187
            MI+F++
Sbjct: 316 NMIDFEI 322


>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 134/183 (73%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  KFL   P+A+D+IVR ++AGLP+ D++ V+   + +P+RSEF  +IETQ +G+
Sbjct: 141 LKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQAIGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L+++ +R+   MPL E +FF  VI++Q + GGNLSEAL+NLS++LRDRK M  K+QA+S
Sbjct: 201 PLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMS 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+ MI
Sbjct: 261 MEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMKKMI 320

Query: 184 NFD 186
           NFD
Sbjct: 321 NFD 323


>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
 gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
          Length = 323

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
          Length = 323

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
          Length = 323

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KF++  P+A+D+IVR ++AGLP+ D++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI+VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
 gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
          Length = 323

 Score =  197 bits (502), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
 gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
          Length = 339

 Score =  196 bits (499), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 132/181 (72%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R   FL++ PN +DIIVR V+AGLP+SD V V+  ++ +PV +EFR+V ETQ +G+SL
Sbjct: 158 KRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVSL 217

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++S+M   +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS E
Sbjct: 218 AEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSE 277

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIG+LPF V  +++F +P YM +L     G +++     +M  GIMVMR MINF
Sbjct: 278 AKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMINF 337

Query: 186 D 186
           D
Sbjct: 338 D 338


>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  196 bits (499), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 131/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P++SEF  ++ETQ 
Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M IGI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 QMINFD 323


>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
 gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  V+++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 324

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 129/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P+R+EF  +++TQ 
Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G M+L     +M IG+ VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
 gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
          Length = 323

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 136/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R A F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL +S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M  K+Q
Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF +    Y +SP Y ++L     G + L ++  +ML G++VM+
Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 317 KMISFDV 323


>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
 gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
          Length = 324

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 131/183 (71%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R  +FL+  P+A+D+IVR ++AGLP+ D++ V+   S +P+++EF  +IETQ +G+
Sbjct: 141 LKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQTIGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+QA+S
Sbjct: 201 PIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMS 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+ MI
Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMKKMI 320

Query: 184 NFD 186
           NFD
Sbjct: 321 NFD 323


>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 325

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  KR AKF  + PNA+D++VR +R G+PV D   ++  ++ +PVRSEFR V+ETQ 
Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLSL E+ +R+   +P  EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR  M+ KVQ
Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA II  LPF V+ +   TSP Y+++L     G + L  AA +M IGI  ++
Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318

Query: 181 LMINFD 186
            MI F+
Sbjct: 319 KMIAFE 324


>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
           gilvum SL003B-26A1]
 gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
           gilvum SL003B-26A1]
          Length = 339

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 131/181 (72%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   FL++ PNA+DIIVR V+AGLP+ D + ++  ++ DPV  EFR+++E Q +GL+L
Sbjct: 158 RKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQVMGLTL 217

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++ R+   +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++ALS E
Sbjct: 218 TEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSE 277

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIGSLPF VS ++Y  +P Y+ +L  +  G+M++     +M IG MVM+ MINF
Sbjct: 278 AKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMKNMINF 337

Query: 186 D 186
           D
Sbjct: 338 D 338


>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
 gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
          Length = 324

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 131/183 (71%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ +G+
Sbjct: 141 LKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQAIGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++A+S
Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VM+ MI
Sbjct: 261 MEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMKKMI 320

Query: 184 NFD 186
           NFD
Sbjct: 321 NFD 323


>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 327

 Score =  194 bits (492), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 126/172 (73%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +FPNA+D+IVR V+AGLP+ D + ++  ++ +PV+SEFR ++E Q LG+ L +++ R+  
Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            MPL E  FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II 
Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +LP  V +LVY TSP YM +L   P G  +L     +ML+G ++MR MINFD
Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326


>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 338

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 135/181 (74%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +F ++F NA+D+IVR +++GLPV D + +I  ++ +PV+SEF  +++ Q LG+SL
Sbjct: 157 KRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGISL 216

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ R+   +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S E
Sbjct: 217 DEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSE 276

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIG+LPF VS  +Y TSP YM++L +   G ++L   A +M +GI+VMR MINF
Sbjct: 277 AKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMINF 336

Query: 186 D 186
           D
Sbjct: 337 D 337


>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 188

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 2   LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL++ ++I RM   +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 62  LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V+   Y +SP Y  +L     G + L ++  +M +GI VM+
Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 182 KMISFDV 188


>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 324

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 131/183 (71%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R   FL   P+A+D+IVR ++AGLP+ +++ V+V  S +P++SEF  +IETQ +G+
Sbjct: 141 LKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQAVGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++A+S
Sbjct: 201 PLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVS 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VMR MI
Sbjct: 261 TEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMRKMI 320

Query: 184 NFD 186
           NFD
Sbjct: 321 NFD 323


>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
 gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
          Length = 340

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 131/181 (72%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R   FL++ PN +DIIVR V+AGLP+SD + V+  ++ DPV +EFR++ ETQ +G+SL
Sbjct: 159 KRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGISL 218

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ ++   +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS E
Sbjct: 219 ADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAE 278

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIGSLPF V  ++Y  SP Y+ VL     G++++     +M  GIMVMR MINF
Sbjct: 279 AKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMINF 338

Query: 186 D 186
           D
Sbjct: 339 D 339


>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
          Length = 340

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 131/181 (72%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR   F+++ PN +DIIVR V+AGLP+ D V V+  ++ DPV +EF +++ETQ +G+SL
Sbjct: 159 KKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQKMGVSL 218

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E+  ++   +PL E +FF+ V+++Q   GG LSEAL NLSR+LR RK +K K+ ALS E
Sbjct: 219 AEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSE 278

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIG++P  +S  ++F +P Y+N+L+    GH+++     +MLIGI+VMR MINF
Sbjct: 279 AKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMRQMINF 338

Query: 186 D 186
           D
Sbjct: 339 D 339


>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 324

 Score =  191 bits (485), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 128/186 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G ++L     +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 331

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 126/182 (69%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R  KF ++F +ALDIIVR V++GLP+++ + +I  +   PV+ EF+ ++E   +G+ +
Sbjct: 150 KGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLAVGVDV 209

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV ALS E
Sbjct: 210 EEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVSALSSE 269

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AKASAWIIGSLP  V  +V   SP YM  L+  P GH LL     +ML GI+VMR MINF
Sbjct: 270 AKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMRSMINF 329

Query: 186 DV 187
            +
Sbjct: 330 KM 331


>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
 gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
          Length = 339

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 134/182 (73%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  +FL++FPNA+DIIVR +++G+P+ D + +   ++ DPV +EF  V++   +G+ L
Sbjct: 158 KKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQMGMPL 217

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E+I  + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++A+S E
Sbjct: 218 AEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQE 277

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK+SA IIGSLPF V+ L++  SP Y+ +L++   G +L+G+   +M IGI+VMR MI+F
Sbjct: 278 AKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMRKMIDF 337

Query: 186 DV 187
            +
Sbjct: 338 KI 339


>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 333

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 129/179 (72%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q LG+ + E
Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK
Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR MINFD
Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332


>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 333

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 129/179 (72%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q LG+ + E
Sbjct: 154 RFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQTLGIPVDE 213

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++A+S EAK
Sbjct: 214 AVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAK 273

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR MINFD
Sbjct: 274 SSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMRKMINFD 332


>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
 gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
          Length = 332

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 123/180 (68%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A F   FPNA+D+IVR +++GLP++D + +I   S +PVR EFR++IE   +G+ +
Sbjct: 151 KKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQMGIPV 210

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+  R+ + +P  E +FFS VI++QS  GGNLSEAL NLS++LR+R+ M  K+QA S E
Sbjct: 211 PEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQAFSSE 270

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S  IIG+LPF V+ +V+ TSP Y+  L     GH +L   A  M  GI+VM+ MINF
Sbjct: 271 AKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMKKMINF 330


>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 322

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 141/187 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I  ++ +PVR+EFR ++E+Q 
Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SLSE+ +++   MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L YF+SP Y+++L     G + + ++  +M++G++VM+
Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
 gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
          Length = 331

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 121/183 (66%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF   F + +D+IVR V++GLP+ + + +I  +S  P+ +EF+RVI+   +G +
Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +S+S M   MPL EV+FF  VI +Q Q GGNLSEAL NLS +LR RK +  KV+ALS 
Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA IIG+LP  V  LVYF+SP Y+ +L   P GH +L V A  M  GI VM+ M+ 
Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328

Query: 185 FDV 187
            DV
Sbjct: 329 LDV 331


>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 322

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 137/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I  ++ DPV++EFR ++E+Q 
Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL L E+ +++   MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L Y +SP Y+++L     G + +  +  +MLIG++VM+
Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 332

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 127/183 (69%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+R AKF     NA+D++VR V++GLP+++ + VI  +S +P+  EFR V+E Q LG
Sbjct: 148 KLTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLG 207

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L++++ RM   MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ +  KV+AL
Sbjct: 208 VPLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKAL 267

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EAKASA ++ SLP  V  +VY +SPGYM  L     G  ++ + A +M IG++VM+ M
Sbjct: 268 SAEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKM 327

Query: 183 INF 185
           INF
Sbjct: 328 INF 330


>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 325

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 127/180 (70%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K RT KF + F +A+DIIVR +++GLPV+D + +I  +  +P+  EFR ++E   +G+S+
Sbjct: 144 KARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMGMSM 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ RM   MP  E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M  K++ALS E
Sbjct: 204 DQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAE 263

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ASA+IIG+LP  V  L+  T+P YM  +  D RGH++L VAA +M +GI VMR MINF
Sbjct: 264 AVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKMINF 323


>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
 gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
 gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
          Length = 325

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 125/185 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K RT KF + F +A+DIIVR +++GLPV D + +I  +  +P+  EFR + E   
Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ +  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA+IIG LP  V TL+  TSP YM  +  DPRGH++L  +A +M IGI VMR
Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318

Query: 181 LMINF 185
            MINF
Sbjct: 319 NMINF 323


>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 326

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+RT KF  +F +A+DI+VR +++GLPV D + +I  +   P+  EF+R+ E   
Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L  S+ +M   MP  E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++
Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG LP  V  ++Y T+PGYM  L+ DPRG+ +L   A +ML GI +MR
Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319

Query: 181 LMINFD 186
            MINF 
Sbjct: 320 KMINFK 325


>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 339

 Score =  180 bits (456), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 127/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK R  K ++ F +ALDIIVR VR+GLP+++ + VI  +S +P+R EF    +   
Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L  S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+
Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASA IIGSLP  V  +V+ T+P Y+  L     GH++L VA   M  GI VMR
Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 333 NMMNFDM 339


>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
           21756]
          Length = 325

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 124/182 (68%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + R  KF + F +A+DIIVR +++GLP+ D + +I  +S +P+  EFR + E   +G+
Sbjct: 142 LAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVAMGV 201

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++ALS
Sbjct: 202 PLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALS 261

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA IIG+LP  V  L+  TSP YM  L  DPRGH++L  AA +M IG++VMR MI
Sbjct: 262 AEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMRKMI 321

Query: 184 NF 185
           NF
Sbjct: 322 NF 323


>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 332

 Score =  177 bits (449), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 130/179 (72%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AKF  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q LG+ + E
Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ RM   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK
Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +SA IIG+LPF V+  VYF SP YM +L     G ++L     +M IGI+VMR MINFD
Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331


>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Sinorhizobium fredii NGR234]
 gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 332

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 131/180 (72%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +F  +FPNA+D+IVR ++AGLP++D + VI  ++ +PV+ EF  +   Q LGL + 
Sbjct: 152 RRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLPVD 211

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R+   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EA
Sbjct: 212 EAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEA 271

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K+SA IIG+LPF V+  VY TSP YM++L     G M+L  +A +M IG ++MR MINFD
Sbjct: 272 KSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMINFD 331


>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 279

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/184 (47%), Positives = 122/184 (66%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R A+F   F +ALDI+VR +R+GLP+ + +A+I  +  +P+  EFR V+E Q LGL
Sbjct: 96  LGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLGL 155

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL ES++R V   P  +  +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A S
Sbjct: 156 SLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAFS 215

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA IIGSLP  V+ L+    P Y+ +L + P GH+LL      M +G +VMR MI
Sbjct: 216 SEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKMI 275

Query: 184 NFDV 187
           NFD+
Sbjct: 276 NFDL 279


>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 327

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 124/181 (68%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +F  +F NALD+I R V++GLP+++ + ++  +S +PV++EF +++E   +G+SL 
Sbjct: 147 RRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIAVGVSLP 206

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           + + RM   MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ ALS EA
Sbjct: 207 DGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIGALSSEA 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K+SA IIGSLP  V  +VY T+P YM  +   P G ++L     +M IGIMVMR MINF 
Sbjct: 267 KSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMRGMINFK 326

Query: 187 V 187
           +
Sbjct: 327 I 327


>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 126/184 (68%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K R  KF  +FPNA+D+IVR +++GLPV +   +I  +S  P+   F++++E   +G+
Sbjct: 143 LAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVGM 202

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L +++ +M   MP  E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+ALS
Sbjct: 203 TLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALS 262

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA II SLP  V T+V FTSPGYM  L  D RG+ LL +A A M  GI VM+ MI
Sbjct: 263 SEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRMI 322

Query: 184 NFDV 187
           +F +
Sbjct: 323 SFKI 326


>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 337

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 121/179 (67%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF ++FPNA+DI+VR +++GLPV D + +I  +S  P+  EF R++E   +G+S+  
Sbjct: 158 RLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVGVGMSVEG 217

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ +M   +P  E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++ALS EA 
Sbjct: 218 ALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAI 277

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           ASA IIG LP  V  ++  T P Y+  +  DPRG ++L   A +M +GI +MR MINF 
Sbjct: 278 ASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMRKMINFK 336


>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 326

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 124/181 (68%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF  +F NA+D+IVR +++GLPV D   +I  +S  PV  EF+ ++E   +GL+L
Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ +M   +P  E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M  K++ALS E
Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ASA IIGSLP  V TLV  T+P YM ++  D RG ++L  +A +M +GI++M+ MI+F
Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324

Query: 186 D 186
            
Sbjct: 325 K 325


>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
 gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
          Length = 330

 Score =  164 bits (415), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 127/182 (69%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF ++F NA+D+IVR V++GLPV++ + +I   +  PV+ EF+ ++E Q +GL+L
Sbjct: 149 RKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQRIGLTL 208

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+ R+   MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M  K+ ALSME
Sbjct: 209 EQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSME 268

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AKASA I+ ++PF VS LVY  +P Y+  L +   G  +L  A  +MLIGI+VM+ MI+ 
Sbjct: 269 AKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMKNMISI 328

Query: 186 DV 187
            V
Sbjct: 329 KV 330


>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 327

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 119/181 (65%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R  KF   F +A+DI+VR ++ GLPV D   +I  +S +P+  EFR ++E   +GL+L
Sbjct: 146 KARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMGVGLTL 205

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ +M   MP  E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M  K++ALS E
Sbjct: 206 AQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSE 265

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ASA II SLP  V  LV  ++P YM ++  D RG ++L  AA +M  G+ VM+ MI+F
Sbjct: 266 AIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMKRMISF 325

Query: 186 D 186
            
Sbjct: 326 K 326


>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
 gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
          Length = 330

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 121/181 (66%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   +GL+L 
Sbjct: 150 KRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 209

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQA + EA
Sbjct: 210 EALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQAYAAEA 269

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +ASA IIGSLP  V  ++   +P Y+ +L     G++LL +      +G++VMR MINFD
Sbjct: 270 RASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMRNMINFD 329

Query: 187 V 187
           +
Sbjct: 330 I 330


>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 331

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 120/181 (66%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   +GL+L 
Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA
Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +ASA IIGSLP  V  ++   +P Y+ VL     G++LL +       G+MVMR MINFD
Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330

Query: 187 V 187
           +
Sbjct: 331 I 331


>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
 gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 113/184 (61%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+ +R  +FL  F  A+ +IVR +RAGLPV++ V V+  +   PV  EFRRV +   LG 
Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++    R + L E  F +  ++VQ + GGNL+E+L NL  ILR R+ M+ K++A+S
Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA IIG LPF ++ L+   SP YM VL   P G +++    A + +G ++MR M+
Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301

Query: 184 NFDV 187
            F++
Sbjct: 302 RFEI 305


>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
           JL354]
          Length = 323

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 123/185 (66%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K+RTA+F   FP+A+D++VR +R+GLPV++ +AV+  +   PV  EF+ +IE   +G 
Sbjct: 140 FMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIGR 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ E++      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+S
Sbjct: 200 SMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
            E+KASA+I+GSLPF V  ++++ +P Y+     D R  M+ G+    +M +G+ +M  M
Sbjct: 260 SESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDER-LMIAGIGGLVWMSLGVFIMSKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
 gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  147 bits (371), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 121/185 (65%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I KRTA F   FP+A++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   +G 
Sbjct: 140 FINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIGK 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E +      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+S
Sbjct: 200 TMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAMS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
            E+KASA+I+G+LPF V  ++++ +P Y++    D R  +++G+    +M IG  +M  M
Sbjct: 260 SESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDER-LIVIGLGGMVWMSIGAFIMAKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
 gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
          Length = 327

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 116/183 (63%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +RT KF+  FP+A++++VR +R+GLP+++ ++V+  +   PV  EFR V +   +G +
Sbjct: 145 INRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMKIGRT 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++      +   E  FF   I++Q + GGNL+E L+NL+ +LR R  MK K++A+S 
Sbjct: 205 MDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIKAMSS 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E+KASA+IIG+LPF V  +++  +  YM     DPR  ++ G    +M +G+ +M  MIN
Sbjct: 265 ESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMSRMIN 324

Query: 185 FDV 187
           F++
Sbjct: 325 FEI 327


>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 323

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I KR   F+  FP+AL+++VR +R+GLP+S+ + V+  +   PV  EF+ V +   LG +
Sbjct: 141 INKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIRLGRT 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +++      + L E SFF   +++Q + GGNL+E LANL+ +LR R  MK K++A+S 
Sbjct: 201 MEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSS 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IGIMVMRLMI 183
           E+KASA+I+GSLPF V  L+Y  +P Y+     D R  M+ G+     L +G  +M  M+
Sbjct: 261 ESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDER-LMVAGIGGLIWLSMGAFIMSRMV 319

Query: 184 NFDV 187
           NF++
Sbjct: 320 NFEI 323


>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 324

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R A+F+  FP+A++++VR +RAGLP+++ +  +  +   PV SEF+ V +   +G 
Sbjct: 141 LAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMRIGR 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L  ++      +   E  FF   +++Q + GGNL+E L NL+ +LR R  MK K+ A+S
Sbjct: 201 TLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMS 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
            E+KASA+IIG LPF V  L+ F SP YM     D R  M+ G     +M IG  +MR M
Sbjct: 261 SESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQR-LMIAGAGGLIWMSIGAYIMRQM 319

Query: 183 INFDV 187
           INF++
Sbjct: 320 INFEI 324


>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
 gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
          Length = 323

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 120/184 (65%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKRT +F   F +A++++VR +R+GLPV++ + V+  +   PV  EF+ ++E   +G +
Sbjct: 141 IKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIGRT 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ES+      + + E +FF   +++Q + GGNL+E L+NL+ +LR R  MK K++A+S 
Sbjct: 201 MEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSS 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
           E+KASA+I+GSLPF V  L+++ +P Y+     D R  ++ G+    +M IG+ +M  M+
Sbjct: 261 ESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDR-LIVTGLGGLTWMGIGVFIMAKMV 319

Query: 184 NFDV 187
           +F++
Sbjct: 320 SFEI 323


>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 317

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 112/178 (62%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A F  D P ALDI  R +RAG PV+D++A++V  +  P+  EF R  +   +G +L E++
Sbjct: 140 ATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVRMGNTLPETL 199

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+   +PL EV+FF+   ++Q++ GGNL E + NL+  LR+R+ ++ K +ALS EA+AS
Sbjct: 200 ERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARAS 259

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           A I+ +LPF V+ L+   +  Y+  L +DPRG  +   AA+ + +GI VM  M   +V
Sbjct: 260 AVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMVRMGKLNV 317


>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
 gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
          Length = 323

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 119/185 (64%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            IKKRT  F   F + ++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   +G 
Sbjct: 140 FIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIKIGK 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ +S+      + + E +FF+  +++Q + GGNL+E L+NL+ +LR R  MK K++A+S
Sbjct: 200 TMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLM 182
            E+KASA+I+GSLPF V  L+Y  +P Y+     + R  M+ G+    +M IGI +M  M
Sbjct: 260 SESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEER-LMVTGLGGLVWMSIGIFIMAKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 310

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR A+F   FP+A+D++VR +R+GLPV++   V+  +   PV  EF+ V+E   +G +
Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++      +   E  FF   I +Q + GGNL+E LANLS +LR R  MK K++A+S 
Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
           EAKASA+I+G+LPF V  +V+  +P Y+     + R  ++ G+    +M IG  +M  M+
Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQR-LIVAGIGGLIWMSIGAGIMAKMV 306

Query: 184 NFDV 187
           NF++
Sbjct: 307 NFEI 310


>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 324

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I KR   F+   P+ALD++VR +R+GLPV++ + V+  +   PV  EF+ V +   +G +
Sbjct: 142 INKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVGRT 201

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++      + L E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+S 
Sbjct: 202 MEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSS 261

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-AFMLIGIMVMRLMI 183
           E+KASA+I+G+LPF V  L+Y+ +P Y+     D R  ++ G+    ++ IG  +M  M+
Sbjct: 262 ESKASAYIVGALPFIVFALIYWINPVYLGKFFVDER-LIIAGLGGLTWLGIGAFIMAKMV 320

Query: 184 NFDV 187
           +F++
Sbjct: 321 SFEI 324


>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
 gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
          Length = 319

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 100/156 (64%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +RT +FLD  P+A+D++VR+ RAG+PVS+A+     ++ +PVRSEFRRV +   +G+
Sbjct: 136 LTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVSIGV 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++ +    + L +  FF   + VQ + GG L+E L NLS ILR RK+M+ KV+AL+
Sbjct: 196 DLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVKALT 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            E + SA I+ SLPF    L++   P Y+  L  DP
Sbjct: 256 AEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDP 291


>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 205

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 115/184 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 20  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 80  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199

Query: 184 NFDV 187
           N D 
Sbjct: 200 NLDT 203


>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 205

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 20  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 79

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 80  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 139

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 140 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 199

Query: 184 NFD 186
           N D
Sbjct: 200 NLD 202


>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 202

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 17  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 76

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 77  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 136

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 137 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 196

Query: 184 NFD 186
           N D
Sbjct: 197 NLD 199


>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
          Length = 204

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 19  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 78

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 79  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 138

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 139 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 198

Query: 184 NFD 186
           N D
Sbjct: 199 NLD 201


>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
          Length = 200

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 15  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 75  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 135 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 194

Query: 184 NFD 186
           N D
Sbjct: 195 NLD 197


>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 212

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 27  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 86

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 87  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 146

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 147 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 206

Query: 184 NFD 186
           N D
Sbjct: 207 NLD 209


>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 217

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 32  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 91

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 92  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 151

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 152 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 211

Query: 184 NFD 186
           N D
Sbjct: 212 NLD 214


>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
          Length = 331

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325

Query: 184 NFD 186
           N D
Sbjct: 326 NLD 328


>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 223

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 38  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 97

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 98  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 157

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 158 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 217

Query: 184 NFD 186
           N D
Sbjct: 218 NLD 220


>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
           10229]
 gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
          Length = 331

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325

Query: 184 NFD 186
           N D
Sbjct: 326 NLD 328


>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
 gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
           1710b]
 gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 331

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325

Query: 184 NFD 186
           N D
Sbjct: 326 NLD 328


>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
          Length = 331

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325

Query: 184 NFD 186
           N D
Sbjct: 326 NLD 328


>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 331

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 146 LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 205

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 206 DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 265

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 266 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 325

Query: 184 NFD 186
           N D
Sbjct: 326 NLD 328


>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 216

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 115/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 31  LIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 90

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 91  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 150

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R + 
Sbjct: 151 AEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRKIA 210

Query: 184 NFD 186
           N D
Sbjct: 211 NLD 213


>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 326

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 114/181 (62%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A F    P AL+++ R++RAG   +  + ++V + +DP+R EF+  +E  + G+ ++
Sbjct: 146 KRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFGMGVT 205

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  ++  +   +++FF   + +Q++ GGNL+E + N+S ++R+R  +K ++Q LS E 
Sbjct: 206 TALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVLSAEG 265

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AW++  LPF V+ ++ F +PGY+ +L  DP G ++    A  + +GI+V+R M+  +
Sbjct: 266 RMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKMVRIE 325

Query: 187 V 187
           V
Sbjct: 326 V 326


>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 200

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 114/183 (62%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +G 
Sbjct: 15  LIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRVGA 74

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +AL+
Sbjct: 75  DLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALT 134

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + ++ II ++PF ++  ++  +  Y+++L     GH +L +AA  + IG+ ++R + 
Sbjct: 135 AEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRKIA 194

Query: 184 NFD 186
           N D
Sbjct: 195 NLD 197


>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
 gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
          Length = 305

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 106/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR   F    P ALD I RS+RAG  +S A+ +I  +  DP+  EF+ V +  + G+  
Sbjct: 124 KKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMNFGIPF 183

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+ + +   +   ++SFF   + +Q + GGNL+E L  L+  +R+R  ++ KV+ LS E
Sbjct: 184 KEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVRTLSSE 243

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SA ++GS+PF  +T++   +P Y+  L N P+GH LL +A   ML+G+ V+  M+  
Sbjct: 244 GRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLNNMVKI 303

Query: 186 DV 187
            V
Sbjct: 304 KV 305


>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
 gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
          Length = 332

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LI KR ++F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   +G
Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ +++      +   E  FF   +S+Q + GGNL+E L+NL+ +LR R  MK K++A+
Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
           S E+KASA+IIG LPF V  ++ + +  YM      DP G        ++G+    +M I
Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319

Query: 175 GIMVMRLMINFDV 187
           G  +M  MINF++
Sbjct: 320 GAFIMAQMINFEI 332


>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 332

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LI KR  +F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   +G
Sbjct: 140 RLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIKIG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++A+
Sbjct: 200 KTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
           S E+KASA+IIG LPF V  L+ + +  YM+     DP G        ++G+    +M I
Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWMGI 319

Query: 175 GIMVMRLMINFDV 187
           G  +M  MINF++
Sbjct: 320 GAFIMAQMINFEI 332


>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 332

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 8/193 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIK R  KF   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   +G
Sbjct: 140 RLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIKIG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++A+
Sbjct: 200 KTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAM 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG------HMLLGVAA-AFMLI 174
           S E+KASA+IIG LPF V  L+ + +  YM+     DP G        ++G+    +M I
Sbjct: 260 SSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWMSI 319

Query: 175 GIMVMRLMINFDV 187
           G  +M  MINF++
Sbjct: 320 GAFIMAQMINFEI 332


>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
          Length = 217

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 30  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209

Query: 182 MINFD 186
           + N D
Sbjct: 210 IANLD 214


>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
          Length = 219

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 32  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 92  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211

Query: 182 MINFD 186
           + N D
Sbjct: 212 IANLD 216


>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
 gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
          Length = 330

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322

Query: 182 MINFD 186
           + N D
Sbjct: 323 IANLD 327


>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 325

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 117/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +  A+FL  FP+ LD+I+R+VRAG+PV  A++    ++ +PVRS FR + ++  L
Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + + V  + + + SFF+  + +Q + GGNL E L NLS I+R R++++ K +A
Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF +   +Y  +  Y+++L +   GH +L +AA  ++IG+ +++ 
Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 325

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 114/187 (60%), Gaps = 3/187 (1%)

Query: 4   LIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           L +KRT + L      P+A D+I R++RAG     A+ ++  +  +P+  EF  V +  +
Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+S+++  MV  +P++++ +F   + +Q + GGNL+E L +++ I+R+R  +  KV+
Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAW++G LPF +  L+   +PGY++V   DP G  + GVA A ML GI+ MR
Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318

Query: 181 LMINFDV 187
            ++   V
Sbjct: 319 KVVRIRV 325


>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 324

 Score =  130 bits (328), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 106/181 (58%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR AKF +  P+A+D++ R++RAG  +  ++ +I  + SDP+  EFR   +  + G SL 
Sbjct: 144 KRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYGFSLQ 203

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P  ++ +    + +Q + GGNL+E L N+S ++R R  +   ++ L+ E 
Sbjct: 204 EAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEG 263

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SAWI+  LPF V+ +++  +PG+M VL  D  G M++ +    ML GI  MR +I   
Sbjct: 264 KLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQIIKIQ 323

Query: 187 V 187
           V
Sbjct: 324 V 324


>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 320

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ K  +  P AL+++ RS+RAG  ++ A  V+ G+  +PV  EF R  + Q LGLSL 
Sbjct: 139 RRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLSLE 198

Query: 67  ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +++  M    P   +V  F+    +Q + GGNL+E L  +S  +R R     K++AL+ E
Sbjct: 199 QAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASAW++G LPF V+  V   +PGY+  L  +P GH ++G A     +GI+ +R +   
Sbjct: 259 GRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLTQL 318

Query: 186 DV 187
           ++
Sbjct: 319 EI 320


>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
           MSMB43]
          Length = 328

 Score =  130 bits (327), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 114/185 (61%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+A+D++VR+VRAG+PV  A+     +S +PVRS F  + +   +
Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + +    + + + SFF+  + +Q + GG+L+E L NLS I+R R++++ K +A
Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E K SA II ++PF +   +Y  +  Y+ +L +   GH +L +AA  + +G++++R 
Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320

Query: 182 MINFD 186
           + N D
Sbjct: 321 IANLD 325


>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  130 bits (327), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 103/176 (58%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F D  P ALD I RS+RAG  ++ A+ ++  +  DP+  EF+ V +    G+   ++I  
Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   +   +++FF   + +Q + GGNL+E L  LS  +R R  ++ K++ LS E +ASAW
Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++GS+PF +  ++   +PGY++VL   P GH L   A   M +G  +++ ++NF V
Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322


>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  130 bits (327), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 108/182 (59%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +    G+  
Sbjct: 151 KQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIPF 210

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I  +   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+ LS E
Sbjct: 211 KDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSE 270

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASAWI+G++PF  + ++   +PGY++VL + P+G  L+ +    M +GI V+  ++  
Sbjct: 271 GRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQI 330

Query: 186 DV 187
            V
Sbjct: 331 KV 332


>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 327

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 112/181 (61%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A F    P AL+++ R+++AG   S  + ++V + ++P+R EF++ +E  + G+ ++
Sbjct: 147 KRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFGMGVT 206

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++ LS E 
Sbjct: 207 VALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEG 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AW++  LPF V   V   +PGY+N+L  +  G   L + A  M +G++V+R M+  D
Sbjct: 267 RMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKMVRID 326

Query: 187 V 187
           V
Sbjct: 327 V 327


>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 326

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 112/181 (61%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +F    P ALD++ R++RAG   +  + ++V + ++P+ SEFR  +E  + G+ ++
Sbjct: 146 KRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFGMGVT 205

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++ LS E 
Sbjct: 206 VALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVLSAEG 265

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AW++  LPF V   V   +PGY+ +L  +P G +L+ V    M +G++V+R M+  +
Sbjct: 266 RMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKMVRIE 325

Query: 187 V 187
           V
Sbjct: 326 V 326


>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 329

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 112/182 (61%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            +R        P ALD+I R++RAG   S  + +   + S+P+  EFR V +  + G SL
Sbjct: 148 NQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEINYGTSL 207

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AK++ LS E
Sbjct: 208 QQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSE 267

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWI+G +PF ++ L+ F +P +M+ L  DP G ++L   A  M+IG++++R ++  
Sbjct: 268 GRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLRRIVRI 327

Query: 186 DV 187
            V
Sbjct: 328 RV 329


>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 325

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 110/182 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  K     P+A+D+I R++RAG   + A+ ++  +  +P+  EF    E  + G+SL
Sbjct: 144 RKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVSL 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+++ + + +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ LS E
Sbjct: 204 DEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAE 263

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWI+G LPFC + ++   +P +M VL  DP G  ++G+A   M++G++ MR +I  
Sbjct: 264 GRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIRI 323

Query: 186 DV 187
            V
Sbjct: 324 RV 325


>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 317

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++  AK     P+AL +IVRS+R G+P+S A+ +IVGQ ++ P   EFR + +   +G S
Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKS 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ 
Sbjct: 194 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 253

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 254 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313


>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 330

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 110/187 (58%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H   +R A      P+ALD++ R++RAG   + +V +I  + S+P+  EFR V +   
Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL ++++ M   +PL ++ +F   + +Q   GGNL+E L NLSR++RDR  + A+V+
Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G +PF +  L+   +P +M+ L  DP G   +      M+IG +++R
Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323

Query: 181 LMINFDV 187
            ++   V
Sbjct: 324 KIVKIRV 330


>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 235

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 116/177 (65%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +G 
Sbjct: 50  LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +AL+
Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            E + +  II ++PF +   ++  +  Y+ +L     GH +L +AAA ++IG++V+R
Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIR 226


>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 322

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 114/181 (62%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR + F   FP A++++ R++RAG   S  + ++  +  +PV SEF +  E    G ++ 
Sbjct: 142 KRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYSFGKTME 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R  ++  V+ALS E 
Sbjct: 202 EALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEG 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + S WI+  +P  +  ++Y+++P Y+N+ + +P G  +L   A   ++GI+V++ +I   
Sbjct: 262 RLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIKQIIKMR 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 319

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++  AK     P+AL +IVRS+R G+P+S A+ +IVGQ ++ P   EFR + +   +G +
Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRAL-IIVGQEAEYPTADEFRMISQDVAVGKN 195

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ 
Sbjct: 196 LGDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALAS 255

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 256 EARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315


>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 320

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 110/180 (61%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF +  P+A+D++ R++RAG  +S A+ V+  +S++P+  EF  V + Q  GL   +
Sbjct: 141 RLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQKFGLQFRD 200

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ ++   +P +++SF  T I VQ + GG+L++ L   +R++R+R  ++ +++  + + +
Sbjct: 201 ALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGR 260

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            + WI+ +LP  +  L+   +PGY ++L +DP G +LLG     +LIG  ++  +++  V
Sbjct: 261 LTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIISRVVDIKV 320


>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 325

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL  KR  +     P+A+D+I R++RAG   S A++++  +   P+  EFR   E  + G
Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAW++G LPF  + ++   +PG+MNVL  DP G  ++G A   M  G++ MR +
Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 325

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 107/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +     P+ALD++ R++RAG     A+ ++  + +DP+  EFR   +  + G+++
Sbjct: 144 RKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFGIAM 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  M   +P  ++ +F   + +Q + GGNLSE L ++S I+RDR  +  +V+ LS E
Sbjct: 204 PDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAE 263

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            K SAW++  LPF  + ++  T+P ++ VL  DP G  +L  A   M +GI+VMR +I  
Sbjct: 264 GKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKIIRI 323

Query: 186 DV 187
            V
Sbjct: 324 RV 325


>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
 gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
          Length = 320

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 107/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R AKF    P+AL++I R++RAG  +     ++  +S DP+  EF +V E Q+LG+SL
Sbjct: 139 KARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLGVSL 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I+ M   +P  ++ FF T I +Q Q GG+L+E L  + R++R R  +   +QAL+ E
Sbjct: 199 EDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  ++  LP  +   ++  +PGY+  L  DP G+ +L VA    LIG  V++ +I+ 
Sbjct: 259 GRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKIIDI 318

Query: 186 DV 187
            V
Sbjct: 319 KV 320


>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 329

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 110/174 (63%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  + G SL 
Sbjct: 149 QRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEINYGTSLH 208

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+ LS + 
Sbjct: 209 QALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADG 268

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + SAWI+G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 269 RMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322


>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 324

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 108/181 (59%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            KR  KF    P+ALD+IVRS+RAG P + A+ ++  +  DP+ +EF  V +    GLSL
Sbjct: 143 NKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEITFGLSL 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ ++ + +  + +   S  +S+Q++ GGNL+E LANLS +LR+R+ ++ K++ALS E
Sbjct: 203 EQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAE 262

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWII   P  +  ++   +P +   + + P    +  +   + L+G  +M  M+NF
Sbjct: 263 GRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMYRMVNF 322

Query: 186 D 186
           D
Sbjct: 323 D 323


>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 325

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 106/181 (58%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +     P+A+D+I R++RAG   S A+ ++  +   P+  EFR   E  + G++L 
Sbjct: 145 KRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYGIALD 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  + AK++ LS E 
Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++G LPF    ++   +P +M VL  DP G  ++G A   M++G++ MR +I   
Sbjct: 265 RMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 322

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 107/181 (59%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            KR  KF    P+ALD+IVRS+RAG P S A+ ++  +  DP+ +EF  V +    GLS+
Sbjct: 141 NKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITFGLSI 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ ++ + +  + +   S  +S+QS+ GGNL+E LANLS ++R+R+ ++ K++ALS E
Sbjct: 201 EQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWII   P  +   +   +P Y   + ++P    +  +   + L+G  +M  M+ F
Sbjct: 261 GRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYRMVTF 320

Query: 186 D 186
           D
Sbjct: 321 D 321


>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 328

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A F +  P+ALD + R++RAG P ++ + ++  +   PV  EF       + G  + 
Sbjct: 148 KRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGNDVR 207

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  ++  MP   V    T I +  + GGNL+E L  LSR++R R   + K++ LS E 
Sbjct: 208 RAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEG 267

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++ ++PF ++  +  TSP YM VLINDP GH L+  A   MLIGI  ++ +I   
Sbjct: 268 RMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIRIQ 327

Query: 187 V 187
           V
Sbjct: 328 V 328


>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
 gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
          Length = 323

 Score =  124 bits (310), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 109/180 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  KF    P+ALD+IVRS+RAG P + A+A++  +  DP+ +EF  V +    GLSL 
Sbjct: 143 KRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEISFGLSLE 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ ++   +  + +   S  +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++ALS E 
Sbjct: 203 QAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWII   P  +  ++   +P +   +  +P    +  +  ++ L+G  +M  M+NFD
Sbjct: 263 RMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMYRMVNFD 322


>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score =  123 bits (309), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score =  123 bits (309), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 329

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 108/173 (62%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  + G SL +
Sbjct: 150 RLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEINYGTSLQQ 209

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+ LS + +
Sbjct: 210 ALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGR 269

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            SAW +G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 270 MSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322


>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 325

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 104/173 (60%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+A D+I R++RAG      + ++  +  DP+  EF  V +  + G+S+++++  MV 
Sbjct: 153 QLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALLNMVS 212

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P++++ +F   + +Q + GGNL+E L ++S I+R+R  +  KV+ LS E + SAW++ 
Sbjct: 213 RVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSAWVLA 272

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            LPF +  L+   +PGY++V   DP G  L GVA   ML GI+ MR ++   +
Sbjct: 273 VLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325


>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  +P+  EF+ V +    G
Sbjct: 138 QLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIGFG 197

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   E+I R+   M   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++ L
Sbjct: 198 IPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTL 257

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +AS W++GS+PF +  ++   +P Y+++L    RG+ L+ + A  M +G +V++ +
Sbjct: 258 SSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLKRI 317

Query: 183 INFDV 187
           +   V
Sbjct: 318 VQIKV 322


>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 325

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + ++     + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 325

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 107/173 (61%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+  D++ R++R+G   + A+ ++  + ++P+  EFR V +  + G+S+SE+++ +  
Sbjct: 153 QLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALTNLAT 212

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P++++ +F   + +Q + GGNL+E L  ++ ++RDR  +  KV+ LS E + SAW++G
Sbjct: 213 RVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSAWVLG 272

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            LPF V   +   +PG++NVL  DP G  ++  A+  ML GI+ MR ++   V
Sbjct: 273 LLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325


>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 322

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 106/184 (57%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +    G+
Sbjct: 139 LADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIGFGI 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E+I R+   +   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++ LS
Sbjct: 199 PFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILS 258

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +AS W++GS+PF +  ++   +P Y+  L   P+G+ ++ + A  M +G +V++ ++
Sbjct: 259 SEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLKRIV 318

Query: 184 NFDV 187
              V
Sbjct: 319 QIKV 322


>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
 gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
          Length = 325

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 119/185 (64%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++++   +++PVR+ FR + ++  +
Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   G+ +L +AA  + +G++V+R 
Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 326

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +     P+A D+I R++RAG     A+ ++  +   P+  EFR   +  + G+S++
Sbjct: 146 KRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEINCGVSMN 205

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +V  +P+ +V +F   + +Q + GGNL+E L N++ I+R+R  + AKV+ LS E 
Sbjct: 206 DALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEG 265

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF V   +   +PGY  V   D  G  + GVA + M +G++ +R  +   
Sbjct: 266 RLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLRKTVRIR 325

Query: 187 V 187
           V
Sbjct: 326 V 326


>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 3   HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           H+++ RT +        P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  
Sbjct: 138 HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K+
Sbjct: 198 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKI 257

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + LS E + SAWI+G LPF  + L+   +PG+M VL  DP G  ++G A   M+ G++ M
Sbjct: 258 RVLSAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWM 317

Query: 180 RLMINFDV 187
           R +I   V
Sbjct: 318 RKIIRIRV 325


>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
          Length = 330

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 109/181 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+SL 
Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ LS E 
Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +I   
Sbjct: 270 KLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329

Query: 187 V 187
           V
Sbjct: 330 V 330


>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
           13177]
 gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 325

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 109/181 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+SL 
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ LS E 
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +I   
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 324

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 115/187 (61%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  +F    P ALD++ R+++AG      + ++  + +DP+  EF + ++  +
Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ +   + ++++ FF   +++Q + GGNL+E +AN++R++R+R  +  KV+
Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++ +LPF ++ ++YF +P Y+++L  +  G  +   A A M++GI+VMR
Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317

Query: 181 LMINFDV 187
            M+   V
Sbjct: 318 RMVKIQV 324


>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 321

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 109/182 (59%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R A F D FP+ L+ + RS+RAG   S A+ +   + SDP+  E RR  E Q+LG  L
Sbjct: 140 RMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQNLGQPL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
              + ++ + +P  +V FF + + +Q + GGNL+E L  L++++R+R  ++A+++A+S +
Sbjct: 200 EIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQ 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              S  I+ ++P  V+ +++  +P Y    I+DP GH L+       L+G +++R ++ F
Sbjct: 260 GLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIRKIVTF 319

Query: 186 DV 187
           DV
Sbjct: 320 DV 321


>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 330

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 109/181 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+SL 
Sbjct: 150 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 209

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ LS E 
Sbjct: 210 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 269

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +I   
Sbjct: 270 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 329

Query: 187 V 187
           V
Sbjct: 330 V 330


>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 323

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  K     P  +D++ R+++AG   S A+ +      +P   EFR   +  + G+S+
Sbjct: 142 RKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVSV 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P+ ++ +F   + +Q + GGNL+E L  +S ++R R  +  K++ LS E
Sbjct: 202 QDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAE 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWI+  LPF  + ++   +PG++ VL  DP G M++G A   M+IGI VM  +I  
Sbjct: 262 GRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIKI 321

Query: 186 DV 187
            V
Sbjct: 322 RV 323


>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
 gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
 gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
 gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
 gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
 gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 325

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 109/181 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+SL 
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ LS E 
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +I   
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 322

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 106/173 (61%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            FP ALD++ R++RAG     AV ++  + +DP+  +FR + +  + G+  +++++ +  
Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P+ +VS+F   + +Q + GGNL+E L  +S I+R+R  +  +V+ LS E K SA I+ 
Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +LPF V  +V   +P +M VL  DP G  ++G+A   ML+GI+ MR +I   V
Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322


>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
 gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
 gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
 gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
 gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 325

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 109/181 (60%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+SL 
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVSLQ 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ LS E 
Sbjct: 205 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +I   
Sbjct: 265 KLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 322

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R + F    P ALDI+ R ++AG PV+ A + +  +   P+  EF+      + G  
Sbjct: 140 ISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++ LS 
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   + F +PGY+  L  DPRG  L+      + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIRKIIN 319

Query: 185 FDV 187
           F+V
Sbjct: 320 FEV 322


>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
          Length = 320

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 105/182 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++RT +F + FP+AL I  RS+RAG     A+ ++  ++  PV   FR   E Q LGL +
Sbjct: 139 ERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQLGLRM 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ  + +
Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S +++ +LP     +     P Y   LIN+P G  +L  AAA  ++G +V+R ++  
Sbjct: 259 GRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIRKIVRI 318

Query: 186 DV 187
            +
Sbjct: 319 RI 320


>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
 gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
          Length = 325

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 104/177 (58%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+ L E++ 
Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ LS E K SA
Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  LPF  + L+   +P ++ VL  DP G +L+GV    M  GI+ MR +I   V
Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325


>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
 gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
          Length = 322

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 100/171 (58%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F +  P ALD + RS+RAG  ++ A+ ++  +   P+  EF+ V +    G+   
Sbjct: 142 KRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEISFGIPFK 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R+   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+ LS E 
Sbjct: 202 EAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEG 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + SA ++GS+PF ++ ++   +P Y +VL + P+GH L+ V A  M +G  
Sbjct: 262 RISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFF 312


>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
 gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
          Length = 316

 Score =  117 bits (294), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL   R  K     P+AL I+ RS+ AG PV+ AV+++  +  DP+ +EF    +   
Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL+ ++ RM       +V  F+  + +Q + GGNL+E L + +  +R+R+ M+ KV+
Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S E + SA I+ S PF V T ++   P +   +I++P           +M IG +VM 
Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309

Query: 181 LMINFDV 187
            MINF +
Sbjct: 310 RMINFKM 316


>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 325

 Score =  117 bits (293), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +      +A+D+I R++RAG   S A+ ++  +   P+  EFR   E  + G++L 
Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ LS E 
Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SAW++G LPF  + L+   +PG+M VL  DP G  ++G A   M  G++ MR +I   
Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 314

 Score =  117 bits (292), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M +L ++R A F +  P  L+I+VRS+RAG P+  A  +   Q  DP  SE     +   
Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  ++  + R +  +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R  ++ +V+
Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA  +   PF ++ L+   +P Y   +  +P   + L VA   ++IG +V+ 
Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307

Query: 181 LMINFDV 187
            ++NF +
Sbjct: 308 RIVNFRI 314


>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 321

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 110/182 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF    P ALD++ R+++AG   S  + ++  +  DP+  EF + ++  + G+S+
Sbjct: 140 KQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEINFGVSV 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  +   +   ++S+F   + +Q + GGNL++ +A+++ ++R+R  +  +++ LS E
Sbjct: 200 ADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA I+ ++P  V+  +   S  Y+  L +D  G +L+G+A   M+ G++VMR MI  
Sbjct: 260 GRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMRKMIRI 319

Query: 186 DV 187
           DV
Sbjct: 320 DV 321


>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 290

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 106/186 (56%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + K+R  KF +  P+AL ++   +RAGL +S A+A +V +S  P+  EF  ++  Q L
Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G++L +++S +   MP Q     ++ + + ++ GG L+E L   S  +R R  M+AK+ A
Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K  AW++G+LP  +  ++    P  M++L +   G   L V A F  +G+ V+R 
Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284

Query: 182 MINFDV 187
           +I  DV
Sbjct: 285 IIAIDV 290


>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
 gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
          Length = 313

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 104/177 (58%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R A F    P+ALD++ RS+RAG      + ++  +   P+ +EFR V+E    G+S++E
Sbjct: 134 RRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVAFGVSVTE 193

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R+   +    ++FF T + +Q + GGNL+E L  +SR+ R R  + AKV+A+S E +
Sbjct: 194 ALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGR 253

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            SA I+ +LPF +  L+   +P Y+ +L  DP G  ++ V    MLIG +V + M+ 
Sbjct: 254 LSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTKRMVT 310


>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 328

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 106/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +    F  A+DI  R++RAG PV+ A++++  + +DP+ +EF  V +    G +L
Sbjct: 147 EKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIAYGANL 206

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++S+  +     L+++  F+  +SVQS+ GGNL+E L NL+ ++RDR ++  KV+ALS E
Sbjct: 207 NDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALSSE 266

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASAW++  LP     +++  +P +   +  DP             LIG++ +R M++ 
Sbjct: 267 GRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLRSMVDL 326

Query: 186 DV 187
            V
Sbjct: 327 KV 328


>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 321

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ +  +  P ALD++ RS+RAG   + A  V+  +  +PV  EF R  E+Q LGL + 
Sbjct: 140 RRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLPVE 199

Query: 67  ESISRMVRYMPL-QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++I +M    P  +++  F+    +Q + GGNL+E L +++  +R R    +K+ AL+ E
Sbjct: 200 QAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +AS  I+G LP  ++ ++   +P YM  L++DP GHM++  AA   L+G+  +  +   
Sbjct: 260 GRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLTKV 319

Query: 186 DV 187
           D+
Sbjct: 320 DL 321


>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
           bermudensis HTCC2601]
 gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. HTCC2601]
          Length = 321

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 105/182 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P S A+AV+  +  DP+ +EF  + +    G  +
Sbjct: 140 KKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRDI 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES+  M   + +Q++ F +  +S+Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P  V  ++  T P Y + +++ P       + A F+ + +MVMR+++N 
Sbjct: 260 AQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVNI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 321

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            +R A F    P AL++I R++RAG  ++    ++  +   P+  EF R  E Q+LG+ L
Sbjct: 140 NRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVPL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+I  M   +P  ++ FF+T + +Q Q GG+L+E L  +  ++R+R  +  ++QAL+ E
Sbjct: 200 EEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  ++ +LP  +  +++  +  Y   L  DP GH +L  A    LIG +V+R ++N 
Sbjct: 260 GRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVNI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
 gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
          Length = 324

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 99/177 (55%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F    P ALD++ R++RAG     A+ ++  +  DP+  EFR + +  + G+    ++ 
Sbjct: 148 RFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYGVPQQTAML 207

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +       ++S+F   + +Q   GGNL+E L N+S+I+R R  +  +++ LS E K SA
Sbjct: 208 NLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSA 267

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+G LPF  + L+   +PG+M VL  DP G   +  A   M++G++ MR +I   V
Sbjct: 268 WILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKIIRIRV 324


>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
 gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 98/178 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    L+ FP+AL  IVR VR G+PV +A+ V+      P   EF R+ +   +G  L 
Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +M     L E  FF+T IS+Q++ GG L++ L  L+ ++R R  MKA+  AL+ EA
Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+G +P   +  +    P Y+ VL     G+++L  A   +  G +VMR +I 
Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315


>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 322

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 105/182 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR        P+ALD++ R++ AG     A+ ++  +  +P+ SEFR V +  + G+  
Sbjct: 141 QKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIPT 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE++  +++ +P  +VS+F   + +Q + GGNL+E L N+S ++R R  +   V+ LS E
Sbjct: 201 SEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAWI+  LPF +  ++   +P ++++L  DP G  ++ +A   M+ GI VM  +I  
Sbjct: 261 GRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIKI 320

Query: 186 DV 187
            V
Sbjct: 321 RV 322


>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 324

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 106/183 (57%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++RT  F D   +AL +I  S+R G     ++ ++  +   P+ +EF RV+   +LG++
Sbjct: 142 VERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMNLGVT 201

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E+++ + + +   ++    T + +Q Q+GGNL+E L N++  +R R  +K +++ L+ 
Sbjct: 202 TEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIKTLTA 261

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + + S  IIG LP  +  ++Y  +PGYM +L   P G  L+  A    LIG++++R ++N
Sbjct: 262 QGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIRRIVN 321

Query: 185 FDV 187
            DV
Sbjct: 322 IDV 324


>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 321

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 108/181 (59%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G+   
Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ LS E 
Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M    
Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320

Query: 187 V 187
           V
Sbjct: 321 V 321


>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
          Length = 321

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 108/181 (59%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G+   
Sbjct: 141 RRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYGVPAD 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ LS E 
Sbjct: 201 TALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEG 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M    
Sbjct: 261 RLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRMTTIR 320

Query: 187 V 187
           V
Sbjct: 321 V 321


>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 320

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +P+  EF R  E Q LGL+L 
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198

Query: 67  ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA I+G+LPF V+  +   +P Y+ VL    RG M++  A+   ++G++ +  +   
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318

Query: 186 DV 187
           D+
Sbjct: 319 DL 320


>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 319

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 103/179 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K   +F+D FP+A+D + R +RAGLP++ AV  I  ++  P+ + F  + +   +G+ +
Sbjct: 136 RKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELKIGVPI 195

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++    + + L +  FF+  +++Q   GGNL   L  LS+I+R R+ ++ K +A + E
Sbjct: 196 EQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAKAATGE 255

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A+ +G +P   S  ++   PGY+  L  DPRG ++L  A   + +  + MR+++ 
Sbjct: 256 IRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMRMIMR 314


>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 321

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 1/173 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR + F +  P+AL +I RS+RAG  ++ AV ++  ++ +P+   FR   E Q LGL +
Sbjct: 139 KKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQKLGLRI 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  M++ M   ++ FF TVI++ ++ GGNLSE L  L+  +R+R  ++ +VQ  + +
Sbjct: 199 TDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQ 258

Query: 126 AKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            + S +I+ +LP F    L Y   PGY +V + + +GH  +  A    +IG +
Sbjct: 259 GRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFL 311


>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
 gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
          Length = 321

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 99/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I KR  +    FP ALDI+ R ++AG   SD++ ++  +    +  EF+ +    + G  
Sbjct: 139 INKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRINFGND 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++   V+ +P      F + +S+  + GGNL+E + NLSRI+R R   K +V+ LS 
Sbjct: 199 VHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S W++   PF +  ++Y +SP Y ++LIN P G  LL      ML+GI  +  +I 
Sbjct: 259 EGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWISKLIK 318

Query: 185 FDV 187
            +V
Sbjct: 319 IEV 321


>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 324

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   PV  EF +     +
Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL + A  ML+G++ +R
Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 318 KILRIEV 324


>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 322

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+ +    + G  
Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++ LS 
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIRKIIN 319

Query: 185 FDV 187
           F+V
Sbjct: 320 FEV 322


>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 320

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 1/182 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +PV  EF R  E Q LGL+L 
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198

Query: 67  ESISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA I+G+LPF V+  +   +P Y+ VL    +G M++  A+   ++G++ +  +   
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318

Query: 186 DV 187
           D+
Sbjct: 319 DL 320


>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
 gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
          Length = 322

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R ++F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      + G  
Sbjct: 140 ISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++ LS 
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   +   +P Y+  L  DPRG  L+      + IG M +R +IN
Sbjct: 260 ESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIRNIIN 319

Query: 185 FDV 187
           F+V
Sbjct: 320 FEV 322


>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 320

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 104/182 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R+ KF + FP+AL I  RS+RAG     A+ ++  +   PV   F+   E Q LGL +
Sbjct: 139 ERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQLGLRM 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ  + +
Sbjct: 199 VDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQ 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S +++ +LP     +    +P Y   LI +P G  +L  AAA  +IG +V+R ++  
Sbjct: 259 GRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIRKIVRI 318

Query: 186 DV 187
            +
Sbjct: 319 RI 320


>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 322

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 99/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+      + G  
Sbjct: 140 ISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++ LS 
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      +  G + +R +IN
Sbjct: 260 ESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIRKIIN 319

Query: 185 FDV 187
           F+V
Sbjct: 320 FEV 322


>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 339

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 108/186 (58%), Gaps = 1/186 (0%)

Query: 3   HLIKK-RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           H+ KK R  KF    P AL ++ RS++AG      + ++  +  +P+  EF +  +  + 
Sbjct: 154 HMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFNY 213

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL +S +++ + + + LQ++ FF T I++Q + GGNL E L  ++ ++RDR  +   ++A
Sbjct: 214 GLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKA 273

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E + S  I+  LP  ++ ++YF +  YM +LI  P G M++GVA    L+G +++  
Sbjct: 274 ITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIHK 333

Query: 182 MINFDV 187
           ++N  V
Sbjct: 334 IVNIKV 339


>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 321

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L +DPRG  ++ +    + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 315 KIINIEI 321


>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 321

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 105/174 (60%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  KF + FP+AL +I RS+RAG   + A+ ++  + +DPV   F+   E Q LGL 
Sbjct: 139 IRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQLLGLR 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++E+++ +   +   ++ FF+T I++ + +GGNLSE L NL++ +R+R  ++ +V+  + 
Sbjct: 199 ITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVRVYTA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + + + +++G+LP     +    +P Y +VL  + +G  +L  A    ++G+ V
Sbjct: 259 QGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312


>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 313

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 111/180 (61%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL ++R A+F    P+AL ++  ++RAG  +  A+ V+  +   P+  EF R +    
Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ R+   +P  ++    T + +Q Q+GGNL+E L N++  +R+R  +K +++
Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + + SA IIG LP  ++ ++   +P Y+  LI +P G ++LG+ AA  ++G++++R
Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306


>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 321

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      + G  
Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++ +S 
Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +  ++    PGY++ L  DPRG  ++      + +G + MR +IN
Sbjct: 259 ESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMRHIIN 318

Query: 185 FDV 187
           F+V
Sbjct: 319 FEV 321


>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
          Length = 325

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 105/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P+  D I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P ++ VL  DP G +L+G+  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF +  P+A+D+  R++RAG  +   +  I  ++SDPV+ EF++++E   LG  + 
Sbjct: 145 RRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALGSQVE 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  + + +PL ++ FF T + +Q Q G N+   L NLS ++R+R NM AK++A + + 
Sbjct: 205 PALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQ 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA ++  LP  V    +   P Y+ +L  DP G      A     +GI+V+R + N  
Sbjct: 265 RFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKIANIK 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
          Length = 321

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      + G  
Sbjct: 139 ISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLNYGYD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++ +S 
Sbjct: 199 LRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   +    PGY++ L  DPRG  L+      + +G + MR +IN
Sbjct: 259 ESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMRHIIN 318

Query: 185 FDV 187
           F+V
Sbjct: 319 FEV 321


>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 323

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   + FP +LD + RS+RAG   S ++ ++  + +DP+  EFR +   Q+LG  L 
Sbjct: 143 KRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQNLGAPLD 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++      +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R  +K +V+A S   
Sbjct: 203 TALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A I+  LP      +   +PGY+  + +D  G  L+G A    ++G   ++ +IN  
Sbjct: 263 RLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIKRIINIK 322

Query: 187 V 187
           V
Sbjct: 323 V 323


>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 333

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 98/174 (56%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             FP ALDI VR +R+G P+  A+ ++  +  DP+ +EF  V +    GL L E+++RM 
Sbjct: 160 QQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALARMA 219

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L ++  F   +SVQ + GGNL+E L NLS+++RDR +M  KV+ALS E + +A I+
Sbjct: 220 ERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAVIL 279

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            +LP      ++ T+P +   +  DP   +  G      L+G   +R MI+  V
Sbjct: 280 TALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333


>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 321

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  DP+ +EF+      +
Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +P Y+  L NDPRG  ++ V    + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314

Query: 181 LMINFDV 187
            +I+ ++
Sbjct: 315 RIISIEI 321


>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 321

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      + G  
Sbjct: 139 VTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLNYGYD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++ LS 
Sbjct: 199 LRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   + F +P Y+  L  DPRG  ++ +    + IG + +R +IN
Sbjct: 259 ESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIRKIIN 318

Query: 185 FDV 187
            ++
Sbjct: 319 IEI 321


>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 321

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 102/173 (58%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +F    P+ALD+I R+++AG   +  + ++  + +DP+  EF++ ++  + G+    
Sbjct: 142 RMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEINFGIPADA 201

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  + R +   ++ FF   +++Q + GGNL+E + N++R++R+R  +  +V+ LS E +
Sbjct: 202 ALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGR 261

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +AWI+  LPF +  ++   +P +M+ L   P G+MLL  +   M IG + ++
Sbjct: 262 LTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314


>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 322

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R A F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      + G  
Sbjct: 140 ISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLNFGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++ LS 
Sbjct: 200 MRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   + F +P Y+  L  DPRG  L+      + IG + +R +IN
Sbjct: 260 ESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIRNIIN 319

Query: 185 FDV 187
           F+V
Sbjct: 320 FEV 322


>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
 gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
          Length = 325

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 105/178 (58%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A+F D  P ALD++ R++R+G  ++  + ++  +   P+ SEF   ++  +LGL+  E+ 
Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +P  ++ FF+  + +Q + GGN++E L ++SR++R+R   K +V+AL+ E + S
Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           A ++  LP  +   ++F +  Y+++L  +P G  +L  A    ++G  +++ ++  ++
Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIEL 325


>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
 gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
          Length = 325

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G+ L 
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ LS E 
Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +I   
Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 288

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   P+  EF +     +
Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL +    M++G++ +R
Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 282 KILRIEV 288


>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 324

 Score =  111 bits (277), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP ALDI+ R ++AG    DA+ +   +   P+  EF+ +    + G    
Sbjct: 144 KRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEINYGKDTR 203

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      FST + VQ + GGNL+E L NL+RI+R R   + +V+  S + 
Sbjct: 204 RALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQG 263

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++  +P  +   +Y +SP Y   L +   G+ LL +A   MLIGI  +  +I  +
Sbjct: 264 RMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWISRLIRIE 323

Query: 187 V 187
           V
Sbjct: 324 V 324


>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
          Length = 325

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G+ L 
Sbjct: 145 RRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYGVPLQ 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ LS E 
Sbjct: 205 EALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +I   
Sbjct: 265 KLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 321

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +F    P+ALD+I R+++AG      + ++  + +DPV  EF+  ++  + G+S  
Sbjct: 141 RRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGVSPD 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M R +   ++ FF   +++Q + GGNL+E ++ ++ +LR+R  +  +V+ LS E 
Sbjct: 201 AALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEG 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +AWI+ +LPF +  +++  +P +M+ L   P G+MLL  +   M  G + ++ +    
Sbjct: 261 RLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLTTIR 320

Query: 187 V 187
           V
Sbjct: 321 V 321


>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
 gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
          Length = 321

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 105/182 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR +   +  P+A++++VRS+R G P S A++V+  +  DP+ +EF  + +    G  +
Sbjct: 140 RKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRDI 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES+  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 200 GESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P  V  ++  T P Y + +++ P       + A F+ + ++VMR+++N 
Sbjct: 260 AQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVNI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 322

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R A   +  P+A++++VRS+R G P S A+ ++  + +DP+ +EF  + +    G  +
Sbjct: 141 KQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++  +   M +Q++ F +  +S+QSQ GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 TEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   +   PF     +    P Y   + + P       V A F+ I I+ M++M+N 
Sbjct: 261 AKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMKMMVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 327

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V +  + G++L+
Sbjct: 147 KRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P++++ FF   + +Q + GGNL+E L  ++ ++R+R  +  +V+ LS E 
Sbjct: 207 EALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWIIG LPF  +  +   +P +++VL  DP G  ++      M+ G++ MR ++   
Sbjct: 267 RLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLWMRRIVRIR 326

Query: 187 V 187
           V
Sbjct: 327 V 327


>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 322

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 2/182 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESAYGRDVG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + S   +   P FC+  ++    PGY + +I+ P       V  A + + + VMR++ N 
Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 327

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V +  + G++L+
Sbjct: 147 KRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYGVTLN 206

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  +V+ LS E 
Sbjct: 207 EALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEG 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWIIG LPF  +  +   +P +++VL  DP G  L+      M  G++ MR ++   
Sbjct: 267 RLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRIVRIR 326

Query: 187 V 187
           V
Sbjct: 327 V 327


>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 325

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 105/181 (58%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G+SL 
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
 gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
          Length = 321

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 100/180 (55%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R A+F +  P ALDII R+++AG P+  +   +  +  DP+  EF+      + G  L  
Sbjct: 142 RMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLNYGYDLRL 201

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++ LS E++
Sbjct: 202 AILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESR 261

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            SAWI+   PF +   +   SP Y+  L  DPRG  ++ V    + IG + ++ +I+ ++
Sbjct: 262 LSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIKKIISIEI 321


>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 325

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K   +  +  P+A+D I RS RAG+PV++    +    S P+ +EFR +     LG+ 
Sbjct: 143 LQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKLGVP 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR R+ +  KVQ+ + 
Sbjct: 203 LRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQSKTS 262

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+ +L P C+  + Y  SP   + L NDP G  +L  A   + +G+++  LM+
Sbjct: 263 EARASAKIVAALFPGCLGYM-YLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHLMV 321

Query: 184 N 184
            
Sbjct: 322 K 322


>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 327

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 1/181 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF    P+ALD++ R+++AG      + ++  +  DP+  EF +V+E  + G+ + E
Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206

Query: 68  SISRMV-RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  +  R+    ++ FF+  + +Q + GGNL+E L +++RI+R+R  +   ++ LS E 
Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA I+ ++PF V+  +   +P Y+ VL  DP G  L   +   M +GI +M+  I   
Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326

Query: 187 V 187
           V
Sbjct: 327 V 327


>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 323

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  KF +  P ALDI+ R+++AG P  + + V   +  DP+  EFR      + G+++ 
Sbjct: 143 KRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMNIK 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +   +++ +P   +    T + VQ   GGNL+E L  ++ ++R R   + KV+  + E 
Sbjct: 203 TAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  +PF +S  ++  +P Y+ +L+ +P G  L+ +A   +++G+  MR +I  D
Sbjct: 263 RLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIRID 322

Query: 187 V 187
           V
Sbjct: 323 V 323


>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 323

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 106/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +  +LG   
Sbjct: 142 QKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMNLGTQA 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M + +   ++    T + +Q Q+GGNL+E + N++  +R+R  +K +++ L+ +
Sbjct: 202 EEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQ 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S ++IG LPF ++T++   SP Y+  L N   G +++G+A    +IG+M ++ ++N 
Sbjct: 262 GRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIKKIVNI 321

Query: 186 DV 187
           +V
Sbjct: 322 EV 323


>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 322

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R     +  P AL+II   +RAG     A+AV+  +   P+  EF RV+    LG S+ 
Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M      +++    T + +Q Q+GGN++E L  +   +R+R  +K +++AL+ + 
Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA II  LP  V+ L+   +P YM  L+ +P G M+L +A    ++GIM++R ++  +
Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
 gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 326

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     LG+ 
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+ + 
Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+ +L P C++ L Y  SP   + L +DP G  +L  A   + +G++V  +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHVMV 322

Query: 184 N 184
            
Sbjct: 323 K 323


>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 321

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  +F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +   + F +P Y+  L  D RG  L+ +    +  G + +R
Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 NIINFEV 321


>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
          Length = 325

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G+SL 
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  ++ VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 327

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  KKR  KF +   ++L II  S++AG     A+ ++  +   P+  E  RV++  +
Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  ++++ +   +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K ++Q
Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  +++  SP YM  L   P G  ++GV     ++G ++++
Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320

Query: 181 LMINFDV 187
            +I+ +V
Sbjct: 321 KIIDIEV 327


>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
          Length = 322

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 103/186 (55%), Gaps = 8/186 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKRTA+  +  P+A++++VRS+R G P S A++++  + SDP+ +EF  + +    G  L
Sbjct: 141 KKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGREL 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E L  LS+++R R  +  +V+A++ E
Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181
           AK S   +   P      +    P Y     ++   H     AA     F+++ ++VMR 
Sbjct: 261 AKWSGNFLSGFPLMALIGIQLIDPNYY----DEAMEHAFFIPAAITVGVFLVLNLIVMRG 316

Query: 182 MINFDV 187
           ++N  V
Sbjct: 317 LVNIKV 322


>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 321

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R
Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +I+F+V
Sbjct: 315 KIISFEV 321


>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 232

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 100/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      + G  
Sbjct: 50  IADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLNYGYD 109

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++ LS 
Sbjct: 110 MRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSA 169

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R +I+
Sbjct: 170 ESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIRKIIS 229

Query: 185 FDV 187
           F+V
Sbjct: 230 FEV 232


>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
          Length = 321

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G+ L
Sbjct: 140 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL+ E
Sbjct: 200 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +I  
Sbjct: 260 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
 gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
          Length = 322

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 103/182 (56%), Gaps = 2/182 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR +   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESAYGRDVG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + S   +   P FC+  ++    PGY + +I+ P       V  A + + + VMR++ N 
Sbjct: 262 QWSGKFLSGFPLFCLGGILA-KDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMRMLTNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 325

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K     P+  D+I R++R+G   +  + ++  +  +P+  EFR   +  + G+SL 
Sbjct: 145 KRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
 gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
          Length = 347

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G+ L
Sbjct: 166 KRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFGIPL 225

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL+ E
Sbjct: 226 DESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGE 285

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +I  
Sbjct: 286 GRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKIITI 345

Query: 186 DV 187
            V
Sbjct: 346 KV 347


>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 323

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 91/147 (61%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R   F D  P  LD+I  S+R G  +  ++A + G   +P+R+E RRV +   LGLS+
Sbjct: 142 QRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQLGLSI 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+ ++  
Sbjct: 202 TQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSM 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152
            + S+++IG+LPF ++ +++  +P YM
Sbjct: 262 QRISSYVIGALPFALALIIFTINPTYM 288


>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 311

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 100/182 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF     +AL I+  S+RAG     A+A I     DP+  EF +V     LG ++
Sbjct: 130 KQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVELGENI 189

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S++ +   M  +E+   +T +S+Q Q+GGNL++ L N+   +R+R  ++  ++AL+ +
Sbjct: 190 EKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIKALTAQ 249

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              SA +I  LP  V  L+   +  YM  +   P G+ LLGV+A   ++G  +++ + N 
Sbjct: 250 GDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIKKITNI 309

Query: 186 DV 187
           ++
Sbjct: 310 EM 311


>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 320

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   KR +   +  P+A++++VRS+R G P S+A++++  +  DP+ SEF  + +    G
Sbjct: 136 HKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAAYG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A+
Sbjct: 196 RDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAI 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EAK S   +   P     ++    P Y + + + P       +   F+++ + VMR++
Sbjct: 256 TAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMRIL 315

Query: 183 INFDV 187
            N  V
Sbjct: 316 TNIKV 320


>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 321

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 103/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  +F    P+A++++ R++R+G  ++  + ++  +   P+   FR   ETQ+LG+ +
Sbjct: 140 KKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQNLGVPV 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++   ++ MP  +  FF T +++Q Q GG+L+E L  +S ++R+R  +   VQAL+ E
Sbjct: 200 ESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  ++ ++P  +   VY+ +P Y+ VL     G  ++ V     ++G + ++ +I+ 
Sbjct: 260 GRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIKKIIDI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
 gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 293

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 100/180 (55%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  + ++  P  LD  VRS+++G  ++DAV   +  S+DP++S   R+     LG+
Sbjct: 111 LYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLGV 170

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L +++S    +    E+  F+  + V  + GGN SE L NL +++R+R+    ++ A++
Sbjct: 171 NLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAMT 230

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +AW++G+LP  +      T+PGYM  + +D  G  +L  A    + G + +  M+
Sbjct: 231 GETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRML 290


>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 326

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     LG+ 
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+ + 
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+ +L P C++ L Y  SP   + L +DP G  +L  A   + +G+++  +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322

Query: 184 N 184
            
Sbjct: 323 K 323


>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 326

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     LG+ 
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+ + 
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+ +L P C++ L Y  SP   + L +DP G  +L  A   + +G+++  +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322

Query: 184 N 184
            
Sbjct: 323 K 323


>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
           Pf0-1]
          Length = 293

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 98/178 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + ++  P  LD  VRS+++G  ++DAV   +  S DP++    RV     LG+SL
Sbjct: 113 QRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLGVSL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +       E+  F+  + V  + GGN SE L NL R++R+R     +++A++ E
Sbjct: 173 PEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +AW++G LP  ++     ++P Y+  + ND  G M+L  A    +IG +++  M+
Sbjct: 233 TRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRML 290


>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 326

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     LG+ 
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKLGIP 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+ + 
Sbjct: 204 LRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQSKTS 263

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+  L P C++ L Y  SP   + L +DP G  +L  A   + +G+++  +M+
Sbjct: 264 EARASAKIVAMLFPGCLAYL-YMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHVMV 322

Query: 184 N 184
            
Sbjct: 323 K 323


>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 326

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     LG+ 
Sbjct: 144 LQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRLGIP 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+ + 
Sbjct: 204 LRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQSKTS 263

Query: 125 EAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           EA+ASA I+ +L P C++ L Y  SP   + L +DP G  +L  A   + +G+++  +M+
Sbjct: 264 EARASAKIVAALFPGCLAYL-YMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHVMV 322

Query: 184 N 184
            
Sbjct: 323 K 323


>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 325

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G+SL 
Sbjct: 145 RRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 325

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+  D+I R++R+G   + A+ ++  + SDP+  EFR   +  + G+SL 
Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P++++ +F   + +Q + GGNL+E L +++ ++R+R  +  K++ LS E 
Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++G LPF  +  +   +P ++ VL  D  G  ++      M  G++ MR +I   
Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
          Length = 325

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR      DFP+ LD+I R+++AG   +DA+ +   +   P+  EF+ +    +    + 
Sbjct: 145 KRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   ++ +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+ LS E 
Sbjct: 205 RALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +P Y+  L     GH LL   A  M IG   +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWISRIIKID 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 316

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 103/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR   F +  P+A+ ++ RS+RAG  ++ AV +I  +  +P+   F+   E Q LG+ +
Sbjct: 135 KKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQKLGVRI 194

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++S+  +   +  Q+ +FF TV  + S+ GGNLSE L  L+  LR R  ++ +V+ ++ E
Sbjct: 195 ADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAE 254

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S +++ +LP  +   +Y   PGY++V        ++LG A    ++G  ++R ++N 
Sbjct: 255 GRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIRKIVNI 314

Query: 186 DV 187
            +
Sbjct: 315 SI 316


>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 325

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G+SL 
Sbjct: 145 KRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P+Q++ +F   + +Q + GGNL+E L  +S ++R+R  +  KV+ LS E 
Sbjct: 205 DALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R ++   
Sbjct: 265 RLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 325

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 101/177 (57%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  + G+SL +++ 
Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E + SA
Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+G LPF  + L+   +  +++VL  DP G  + G     M+ G+  MR +I   V
Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325


>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
          Length = 322

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 97/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P  V      + P Y + +I+ P       +    +   I VMR + N 
Sbjct: 261 AQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMRKLTNI 320

Query: 186 DV 187
            V
Sbjct: 321 QV 322


>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 323

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 99/176 (56%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F+   P  LD++ RS++AG   +  + +   +  DP+  EF   ++  + G+ + +++ +
Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   +++FF   + +Q + GGNL+E + +++ ++R+R     KV+AL+ E   S W
Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++  LPF +  ++ F +P Y+ +L  +  GH+++  A   M+IG   MR ++  DV
Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323


>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 317

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 103/180 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   F    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G++L 
Sbjct: 137 RRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYGVTLD 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+S E 
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A  +   PF +  ++   SP Y + + +   G  L+    A M IG +++  M+NF+
Sbjct: 257 RITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKMVNFE 316


>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
 gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
          Length = 292

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 99/178 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++  + ++  P  LD  VRS++AG  +SDAV   V  + +P+RS   RV     LG+ L
Sbjct: 112 RRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQLGVPL 171

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++S +       E+  F+  + +  + GGN SE + NL +++R+ +    +++A++ E
Sbjct: 172 DDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLRAMTGE 231

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +AWI+G+LP  +     F +PGY+  +  D  G M+L  A A   +G +V+  M+
Sbjct: 232 TRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLWRMM 289


>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 333

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 4/189 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMV 178
           ALS E + +A ++ +LP      ++  +P +   +  D     ++G        LIG   
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDS--MFIIGFVGLIVLYLIGFFT 324

Query: 179 MRLMINFDV 187
           +R M++  V
Sbjct: 325 IRRMVDLKV 333


>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 317

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 103/180 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G++L 
Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYGVTLD 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LR R  +KAKV+A+S E 
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEG 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A  +   PF +  ++   SP Y + L +   G  ++ V    M IG +++  M+NF+
Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKMVNFE 316


>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 319

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 2/187 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K +  +R A      P AL+IIVRS+ AG PV  A+A++  + SDPV +EF    +    
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +L ++I RM       +V  F+  + +Q + GGNL+  L   +  +R+R  M+ K++A
Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMVMR 180
            S E +ASA I+ + PF    ++   SP +   +I++P     LLG+   ++ IG +VMR
Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGL-TVWVGIGNLVMR 312

Query: 181 LMINFDV 187
            MI+  +
Sbjct: 313 RMIDMKL 319


>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 293

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 102/183 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + ++  P  LD  VRS++AG  ++DAV   +  S +P+RS   RV     
Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++
Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A I+G+LP C+       +P Y+  +  D  G M+L +A A  ++G +V+ 
Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287

Query: 181 LMI 183
            M+
Sbjct: 288 RMM 290


>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 327

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 103/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR        P A D+I R++RAG   S A+ ++  + ++P+  EFR V +  + G++L
Sbjct: 146 RKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDEINYGVTL 205

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++  +   +P+ ++ +F   + +Q + GGNL+E L +++ ++R R  +  KV+ LS E
Sbjct: 206 NEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVLSAE 265

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S WI+  LPF  +  +   +P + +VL  DP G  ++      M++GI+ MR ++  
Sbjct: 266 GRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILWMRRIVQI 325

Query: 186 DV 187
            V
Sbjct: 326 RV 327


>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 336

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 107/182 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R +      P A+D++  ++ AG  ++ A+ +   + S+P+  E  +V+  Q LGLS 
Sbjct: 155 KRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGLSQ 214

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ RM+   P +++    T I++Q ++GG+L+  L ++S  +R+R  +K +++ L+ +
Sbjct: 215 EEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQ 274

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SA+I+ ++PF ++ +++  +  Y+  L     G ++L VA A +++G  +MR +I  
Sbjct: 275 GRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRIIAI 334

Query: 186 DV 187
            V
Sbjct: 335 KV 336


>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 333

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 89/151 (58%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           ALS E + +A ++ +LP      ++  +P +
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAF 297


>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 327

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR V+AG+P ++A  +I      P+  E   + +   L
Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLSL +++      +PL E  FF+ ++ +  + GG LS+ L  LS  LR+R+ +  K++A
Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E +ASA I+  L       +YF SP     L++DP G+ +L  A   +L G+ +   
Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320

Query: 182 MI 183
           MI
Sbjct: 321 MI 322


>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 322

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR +   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +   
Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + S P      +    P Y + +++         + AAF+ + ++VMR
Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 ILVNIKV 322


>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
          Length = 319

 Score =  103 bits (258), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 102/180 (56%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R   F    P+A++++ R++RAG  ++  + V+  +   P+  EF RV E Q+LG+ L E
Sbjct: 140 RLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQNLGIPLEE 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  M   +P  ++ FF T +++Q Q GG+L+E L  +  I+R+R  +  +V+AL+ E +
Sbjct: 200 ALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGR 259

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            S  ++ +LP  +  ++ +T P Y+ +L  D  G  +   A   MLIG   ++ +++  V
Sbjct: 260 LSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIKKIVDIKV 319


>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score =  103 bits (258), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315


>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
 gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
          Length = 325

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G+ L+
Sbjct: 145 RRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYGVPLN 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E 
Sbjct: 205 DALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+G LPF    ++   +  +++VL  DP G  ++G     M  G++ +R ++   
Sbjct: 265 RLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRIVRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
 gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
          Length = 329

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR  RAG+PVS+A  ++      P+  EF  V +   L
Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L +++    + +PL E  FF  ++ +  + GG LS+ L  L+  LR+R+ +  K++A
Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E +ASA I+ SL       +Y  SP     L+ND  G+ +L  A   +L+G+ +   
Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322

Query: 182 MIN 184
           MI 
Sbjct: 323 MIK 325


>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 322

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 101/182 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P S AVA++  +  DP+ +E   + +    G  +
Sbjct: 141 KKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRDM 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES+ +M   M +Q++ F +  +++Q+  GGNL+E L  LS+++R R  +  +V+A++ E
Sbjct: 201 GESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   +   P     ++    P Y + +           V AAF+++ ++VMR ++N 
Sbjct: 261 AKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVNI 320

Query: 186 DV 187
            V
Sbjct: 321 QV 322


>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
 gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
          Length = 323

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 101/182 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR     +  P+A++++VRS++ G P S A+A +  +S DP+ +EF  + +    G  +
Sbjct: 142 KKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGEI 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++S+  M   + +Q++ F + V+ +Q++ GGNL+E L  L+ ++R R  +  KV A++ E
Sbjct: 202 TDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAE 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S + + + P      +  T P + + ++        + V A  ++I I+ MR+M N 
Sbjct: 262 AKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTNI 321

Query: 186 DV 187
            V
Sbjct: 322 KV 323


>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 323

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF    P+AL+++ R++R+G  +S  ++V+V +   P+ +EF    E Q+LG+ + 
Sbjct: 143 RRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQNLGIPIG 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M+  MP  ++ FF T + +Q Q GG+L+E L  +  I+R R  +  +VQAL+ E 
Sbjct: 203 EALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + S  ++ +LP  +   VY+ +P Y+ +L  D  G  ++       ++G + ++ ++N  
Sbjct: 263 RISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIKKIVNIK 322

Query: 187 V 187
           +
Sbjct: 323 I 323


>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 319

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   KR  KF D   +AL I+  S+RAG     A+  +  +   P+ +EF R ++   
Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E+++ M   +   ++    T +++Q Q+GGNL+E L N+   + +R  MK +++
Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+  LP  +  ++   +P Y+ +L   P G +L+G A    LIGIM+++
Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 313 KVINIEL 319


>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 317

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 105/180 (58%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G++L 
Sbjct: 137 RRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLD 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+A+S E 
Sbjct: 197 DALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEG 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A  +   PF +  ++   SP Y + +     G +++ V  A M IG +++  M+NF+
Sbjct: 257 RITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKMVNFE 316


>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
 gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
          Length = 322

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LSRILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   + + IG + +
Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMIS-LFIGTLWI 314

Query: 180 RLMINFDV 187
           R ++N +V
Sbjct: 315 RKIVNIEV 322


>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 335

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 104/176 (59%), Gaps = 4/176 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F D  P  LD+I  S+R G  +  ++A +     +P R+E RRV +   LGLS+++++ 
Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+ ++   + S+
Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--LIGIMVMRLMIN 184
           ++IG+LPF ++ +++  +P YM  L     G +L     AF+  ++G +++R +++
Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQP--GLILCIPIGAFISSVVGFLIIRKIVD 332


>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M +G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLL 315


>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 104/180 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +F    P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    G  L
Sbjct: 140 KRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ +   +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A+S E
Sbjct: 200 VSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SA+I+ ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  M NF
Sbjct: 260 GRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 319


>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 310

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 95/182 (52%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  KR A+F     + L ++   +RAG  +  A+     +S  P   E RRVI    LG 
Sbjct: 127 LAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETSLGR 186

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  S++     M  ++  + +  I +  ++GGNL+E L  ++  +R+R  +K  ++AL+
Sbjct: 187 DLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALA 246

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K SA+I+ ++P  +  ++   +PGYM+ +   P G  ++  +  FM IG + MR +I
Sbjct: 247 AEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMRKII 306

Query: 184 NF 185
           + 
Sbjct: 307 DL 308


>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 331

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++ KKR   F    P AL++  R++RAG  +   + ++  + + P+  EF RV E Q+
Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++  M   +P  +V FF T + +Q Q GG+L E L  +S ++R R  +K +V 
Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMVM 179
           AL+ E + S  ++ ++P  +   ++ T+  Y+  L  DP  G  +L  AA   ++G + +
Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323

Query: 180 RLMINFDV 187
           R +++  V
Sbjct: 324 RKIVDIKV 331


>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 322

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K S   +   P      +    P Y N  +        + V   F+++ ++VMR ++N  
Sbjct: 262 KWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMRALVNIK 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 101/177 (57%), Gaps = 1/177 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  +P+  EFR   +  +
Sbjct: 140 MRHR-NRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLL 315


>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 283

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 100/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L K+R  KF+   P+AL++I  S+++G  VS+A+  +  +   P++ EF+  +  Q L
Sbjct: 98  QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P +E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
          Length = 317

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 103/180 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G++L 
Sbjct: 137 RRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYGVTLD 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   + ++++   +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+S E 
Sbjct: 197 DALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEG 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A  +   PF +  ++   SP Y + + +   G  ++    A M +G +++  M+NF+
Sbjct: 257 RITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKMVNFE 316


>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
 gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
          Length = 317

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 99/181 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R   F + FP+ALD++  +++AG  +  ++ ++  +   P+  EF  V+E  + G S+
Sbjct: 136 RQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKSI 195

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++    + +   E+ +F T + VQ + GGNL E L  +S I+R +   + +V+ALS E
Sbjct: 196 DSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAE 255

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            K SA I+ +LPFC++  V   +  Y+ +LI DP G  L+  A   M  G  ++   +  
Sbjct: 256 GKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQL 315

Query: 186 D 186
           D
Sbjct: 316 D 316


>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 322

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   + + P      +    P Y + +   P       V  AF++  ++ M++M+N 
Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 322

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS+ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVM 179
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   + + IG + +
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVS-LFIGTIWI 314

Query: 180 RLMINFDV 187
           R ++N +V
Sbjct: 315 RKIVNIEV 322


>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 322

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 98/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 AECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   + + P     ++    P Y + +   P       V  AF++  ++ M++M+N 
Sbjct: 261 AKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMKIMVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 322

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 AECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   + + P      +    P Y + +   P       V  AF++  ++ M++M+N 
Sbjct: 261 AKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 310

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 95/185 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++     M  ++  + S  I +  ++GGNL++ L      +R+R  +K  ++
Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++PF +  ++   SP YMN + + P G  ++GV+   M IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303

Query: 181 LMINF 185
            +I+ 
Sbjct: 304 KIIDL 308


>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 325

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP+ALD++ R+++AG   SDAV ++  +   P+  EF  +    +      
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + NLSR++R R   + +V+ LS E 
Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +PGY+  L     GH LL   A  M +G + +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 322

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       + G  
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++ +S 
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
           E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318

Query: 184 NFDV 187
           N +V
Sbjct: 319 NIEV 322


>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 322

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       + G  
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++ +S 
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
           E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318

Query: 184 NFDV 187
           N +V
Sbjct: 319 NIEV 322


>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 323

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 95/161 (59%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+AL+++ R++R+G  ++  + V+V +  DP+  EF    E Q+LG+ + +++  +  
Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P  +  FF+T +++Q Q GG+L+E L  +  I+R+R  +  +VQAL+ E + S  ++ 
Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +LP  +  ++Y+ +P YM +L  +  G  ++  A    ++G
Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILG 311


>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 322

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 99/182 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P + A+A++  + +DP+ +EF  + +    G  +
Sbjct: 141 KKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +ES+      M  Q++ F S  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 TESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   + + P     ++    P Y + +           V   F+ I ++ M++M+N 
Sbjct: 261 AKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
 gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
          Length = 322

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       + G  
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++ +S 
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
           E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318

Query: 184 NFDV 187
           N +V
Sbjct: 319 NIEV 322


>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 316

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 97/180 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R A+F     + L ++   +RAG  V  A+  +  ++S+P  +EF RV+    
Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L +S++ +   M  ++ ++ +  I +  ++GG+L+E    +   +R+R  +K  V+
Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA I+ +LP  +  L+   +P Y   L   P G M+LG+A   M IG + +R
Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309


>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
          Length = 292

 Score =  100 bits (249), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 103/175 (58%), Gaps = 8/175 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIE---TQHLGLSLSE 67
           FL  FP A+D   RS++AG+PV  A+  I+G++ D    EF RRV++      +GL   E
Sbjct: 116 FLSRFPEAVDNFTRSIQAGIPVDRALK-ILGEAYD---DEFGRRVLKLCREMKVGLPFRE 171

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++      +   +V FF  V+++  + G  LS  LA+LS +LR+R+ +  K++AL+ E++
Sbjct: 172 ALGNFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESR 231

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           ASA ++  LP  +  L  F +P  +  L+NDP G ++ G A A ML G ++++ M
Sbjct: 232 ASARVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRM 286


>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++RT  F++   + + ++  S+RAG  +   + ++  ++  P+  EFRRV+    LG+  
Sbjct: 146 RRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGIPT 205

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++S ++R +P +++    T I+VQ ++GGNL++ L  +   +R+R  +K +++ L+ +
Sbjct: 206 QEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLTAQ 265

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              S +II +LP  ++ L+   +PGY+  ++  P   M +G     + +G + MR ++N 
Sbjct: 266 QSISGYIISALPVGLALLLMVINPGYVMGMMRWPWICMPIG-GVVLIFLGFIAMRKIVNI 324

Query: 186 DV 187
           +V
Sbjct: 325 EV 326


>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 317

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 104/179 (58%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF +  P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G++L +
Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+++S E +
Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +A  +   PF +  ++   +P Y + + +   G +++      M IG +++  M+NF+
Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316


>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 99/182 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   + + L
Sbjct: 220 RQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVNIPL 279

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++ L+ +
Sbjct: 280 EDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 339

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S WI+GSLP  +  L+   +P Y+  L+  P G MLLG      + G++V+R +I  
Sbjct: 340 GRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRALIRV 399

Query: 186 DV 187
           D+
Sbjct: 400 DI 401


>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 322

 Score =  100 bits (249), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 105/188 (55%), Gaps = 12/188 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P++++++VRS+R G P+  A+ ++  +S DP+ +EF  + +    G  +
Sbjct: 141 KKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAAYGREV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM------VM 179
           A+ S   + + P      +    P Y + +++    H L  + A F ++G+M      VM
Sbjct: 261 AQWSGKFLSAFPLGALLFILVKDPNYYDGVMD----HELF-IPACF-VVGVMLTMNLFVM 314

Query: 180 RLMINFDV 187
           R++ N  V
Sbjct: 315 RMLTNIKV 322


>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 322

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 95/182 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECSYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ E
Sbjct: 201 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P           P Y + +++ P       +    +   I VMR + + 
Sbjct: 261 AQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMRKLTDI 320

Query: 186 DV 187
            V
Sbjct: 321 QV 322


>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 322

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +   
Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  + +Q Q GGNL+E LA L++++R R  +  +V 
Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255

Query: 121 ALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A++ EAK S   +   P FC+   +    P Y + +++ P            + + ++VM
Sbjct: 256 AITAEAKWSGKFLSGFPVFCL-VFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVM 314

Query: 180 RLMINFDV 187
           R++ N  V
Sbjct: 315 RILTNIKV 322


>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 322

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 101/186 (54%), Gaps = 8/186 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +    G  +
Sbjct: 141 KKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +S+Q Q GGNL++ LA L++++R R  +  +V A++ E
Sbjct: 201 GEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR---GHMLLGVAAAFML-IGIMVMRL 181
           AK S   +   P      +    P Y + ++++P        +G    FML + ++VMR+
Sbjct: 261 AKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVG----FMLTLNLIVMRI 316

Query: 182 MINFDV 187
           + N  V
Sbjct: 317 LTNIKV 322


>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 322

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 98/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A   +  P+A++++VRS+R G P + AVA++  +  DP+ SE   + +    G  +
Sbjct: 141 KKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 GEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   +   P     ++    P Y + +           V A F++  + VMR+++N 
Sbjct: 261 AKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMRMLVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 320

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 101/182 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR A+F     +AL I+  S+RAG     A+ ++  +   P+  EF R +   +LG + 
Sbjct: 139 QKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMNLGTAT 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +   +  +++    T + +Q Q+GGNLS+ L  +S  +R+R  +K +++ L+ +
Sbjct: 199 EEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQ 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  I+G+LP  +  ++   +PGY+ +L +D  G +L+       LIG+ +++ +++ 
Sbjct: 259 GRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIKKIVDI 318

Query: 186 DV 187
            V
Sbjct: 319 KV 320


>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 321

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 99/171 (57%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL++I R ++AG PV  A+A++  +  DP+ SEF  + +    G  L  +++ +  
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +  +++  F T +S+Q+  GGNL E L  L+  +R+R  ++ KV+A++ E + SA+I+ 
Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           ++P  +   +    PG+ + +  +P+   LLG +  ++++G ++M  M NF
Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNF 319


>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
 gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
           sediminis HAW-EB3]
          Length = 325

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR       FP+ALD++ R+++AG   SDA+ +   +   P+  EF+ +    +    + 
Sbjct: 145 KRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANINYTKDVK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + +LSR++R+R   + +V+ LS E 
Sbjct: 205 RALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +P Y+  L     G  LL   A  M IG   +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWISKIIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 322

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 101/182 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ SEF  + +    G  +
Sbjct: 141 KKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENAYGRDM 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +   + LQ++ F +  +++Q Q GGNL+E LA L+ ++R R  +  +V+A++ E
Sbjct: 201 GEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   + + P      +    P Y + +++ P         A F+ + ++VMR +++ 
Sbjct: 261 AQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMRKLVDI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 96/180 (53%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AK  +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +    G  + E
Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  M   + +Q++ F S  +++Q Q GGNL+E LA L+ ++R R  +  KV+A++ EAK
Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            S   + + P      +    P Y + +++ P            + + ++VMR++ +  V
Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322


>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 322

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 2/184 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF +  P ALDII R ++AG P++     +  + S P+  EF       + G  
Sbjct: 140 IADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLNYGYD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++ +S 
Sbjct: 200 LRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIKTISA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGIMVMRLMI 183
           E++ SAW++   PF +  ++    P Y+ +L   P G  M++G   A + IG + +R ++
Sbjct: 260 ESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVA-LFIGTLWIRKIV 318

Query: 184 NFDV 187
           N +V
Sbjct: 319 NIEV 322


>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
 gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
          Length = 322

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 100/182 (54%), Gaps = 2/182 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECAYGRDIG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLP-FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + S   +   P FC++ ++    P Y + +++ P            +   + VMR++ N 
Sbjct: 262 QWSGKFLSGFPLFCLAGILV-KDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMRMLTNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 309

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 100/175 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +F    P  LD++   +RAG     ++     Q   P+    ++V+    LGL L
Sbjct: 128 QRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISLGLDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            + ++R V  +   ++    T I +Q ++GGNL++ L N++R++RDR+++ A+++AL+ +
Sbjct: 188 EDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKALTSQ 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    I+  LP  ++ ++   SPGY++ L +  +G ++LG A  F  IGI+V++
Sbjct: 248 GRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQ 302


>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
 gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
          Length = 325

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR----RVIETQHLG 62
           KR       FP+ LD+I R+++AG   +DA+ +   +   P+  EF+     +  T+ + 
Sbjct: 145 KRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNINYTKDIK 204

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L+L   I R+    P      F++ + VQ + GGNL+E + NL+R++R R   + +V+ L
Sbjct: 205 LALLGFIQRV----PSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+  LPF +  ++Y  +P Y+  L     G  LL      M+IG   +  +
Sbjct: 261 SAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWISRI 320

Query: 183 INFDV 187
           I  DV
Sbjct: 321 IKIDV 325


>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 325

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 98/172 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  + G+SL
Sbjct: 144 RRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVSL 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E
Sbjct: 204 HDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAE 263

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M  G++
Sbjct: 264 GRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLL 315


>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 321

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 98/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P + A+ ++  +  DP+ +EF  + +    G  +
Sbjct: 140 KKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRDI 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 200 GEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P      +    P Y + +++ P       +    + + ++VMR ++N 
Sbjct: 260 AQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVNI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 322

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 97/181 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P + A++++  + +DP+ +EF  + +    G  + 
Sbjct: 142 KRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRDIG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ EA
Sbjct: 202 EALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K S   +   P      +    P Y +  +  P       +   F++  + VMR ++N  
Sbjct: 262 KWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVNIK 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 325

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +      
Sbjct: 145 KRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANINYSKDTK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+ LS E 
Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 325

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +      
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANINYSKDTK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+ LS E 
Sbjct: 205 RALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWISKLIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 320

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 101/181 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R   F  +    + II  S++AG     A+AV+  ++SDP   EF+++++   LG+S 
Sbjct: 139 KDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMSLGISE 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  ++  +  +++     VI +Q  +GGNLSE L N+S  +R+R+ +K++++ L+ +
Sbjct: 199 EDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELKTLTAQ 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  I+  +P  +   +Y  +  Y+ +L     G +++  A     +G++++R +IN 
Sbjct: 259 GRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIRKIINI 318

Query: 186 D 186
           D
Sbjct: 319 D 319


>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 301

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 99/171 (57%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    G  L  +++ +  
Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNSLFD 188

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A+S E + SA+I+ 
Sbjct: 189 RVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAYILT 248

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  M NF
Sbjct: 249 AIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNF 299


>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 320

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 86/148 (58%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P ++A+A++  +  DP+ SEF  + +    G  +
Sbjct: 139 KKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRDI 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V A++ E
Sbjct: 199 GEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153
           AK S   + + P     ++    P Y +
Sbjct: 259 AKWSGKFLSAFPIVALIVIKLGDPHYYD 286


>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 320

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 102/184 (55%), Gaps = 4/184 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR     +  P+A++++VRS+R G P + A++++  +  DP+ SEF  + +    G  +
Sbjct: 139 KKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRDI 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ E
Sbjct: 199 GEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITAE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA--FMLIGIMVMRLMI 183
           AK S   + + P     ++    P Y + ++  P    + G  A   F+ + ++VMR + 
Sbjct: 259 AKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHP--LFIPGCIAVVLFLSLNLIVMRKLT 316

Query: 184 NFDV 187
           +  V
Sbjct: 317 DIKV 320


>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 322

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 96/182 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ +E   + +    G  +
Sbjct: 141 KKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAAYGRDM 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 GESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S   +   P      +    P Y + ++          V  AF+++ + VMR + N 
Sbjct: 261 AKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMRHLTNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
 gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
          Length = 322

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 85/153 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAAYGRDMG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           K S   + + P      +    P Y +  +  P
Sbjct: 262 KWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHP 294


>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 319

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R     D  P   D++ R++ +G  +S A  ++  Q   P+  EF+   + Q+LGL   
Sbjct: 142 QRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLGLPYE 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  + R   + E+  F+  + VQ Q GG+ S+ L NL+  +R+R  +  KV+A++ E 
Sbjct: 202 ITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAITSEG 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +A AW++ +LPF     +Y     Y +VL+  P    ++ V+ A   +GI  +R ++  +
Sbjct: 262 RAQAWVLSALPFVSFGGIYLLDRDYASVLLERPNVMAIMAVSIA---LGIAWIRQIVCIE 318


>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 279

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R AK ++  P+AL+++  S+R+G  ++ A+ ++  ++  P   E   V+  Q LG
Sbjct: 95  YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++     + + L++V+   + I++   +GGNLSE L  L+  LR +  M+ K++AL
Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++G LP  +  +++   P  M  L +   G  ++ V A  +++G + ++ +
Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274

Query: 183 INFDV 187
           +  DV
Sbjct: 275 VTIDV 279


>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 283

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 97/186 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K L K+R  KF+   P+AL++I  S+++G  VS A+  +  +   P++ EF+     Q L
Sbjct: 98  KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P  E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 326

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 100/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   F    P  L ++  S+ AGL ++ +   +  + +DPV +EFRR +    LG+ L 
Sbjct: 146 RRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETRLGVPLE 205

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +       ++++    I +Q Q+GGNL+E L  ++  +R+R+ ++ +V ALS E 
Sbjct: 206 DALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEG 265

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++GSLP    T +   +  Y+  L  DPRG +LL  AA ++ +G   M  ++  +
Sbjct: 266 RLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMSRLVRVE 325

Query: 187 V 187
           V
Sbjct: 326 V 326


>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 323

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 102/182 (56%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +   LG   
Sbjct: 142 QKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMSLGTPT 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M + +   ++    T + +Q Q+GGNL+E L N++  +R+R  +K ++++++ +
Sbjct: 202 EEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIRSITAQ 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S  +IG LPF ++ L+   SP Y+  L N   G +++  A    +IG++ ++ +++ 
Sbjct: 262 GRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIKKIVDI 321

Query: 186 DV 187
           +V
Sbjct: 322 EV 323


>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
 gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
          Length = 314

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 88/162 (54%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   ++L ++  S+RAG  +  A+A +  ++  P   EF R+I    +G  L+ ++    
Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             M  Q+  + +  I++  ++GGNL+E L  +   +R+R  ++ +VQAL+ E K SA+++
Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            +LPF +   ++ ++P Y+ VL   P G  ++      + IG
Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIG 302


>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 322

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +    G  + 
Sbjct: 142 KRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECAYGRDIG 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 202 EALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEA 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + S   + + P           P Y + +++ P            + + + VMR++ N  
Sbjct: 262 QWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMRVLTNIK 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 322

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A F +  P+A++++VRS+R G P S A+ ++  +  DP+ SE   + +    G  +
Sbjct: 141 KKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRDI 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+A++ E
Sbjct: 201 GDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVMRL 181
           AK S   +   P     ++    P Y + +       P   + LG    F++    VM+ 
Sbjct: 261 AKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLG----FLIANYFVMKA 316

Query: 182 MINFDV 187
           + N  V
Sbjct: 317 LTNIKV 322


>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 310

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    LG 
Sbjct: 127 LAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLGR 186

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++     M  ++  + S  I +  ++GGNL++ L  ++  +R+R  +K  ++AL+
Sbjct: 187 DLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKALA 246

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K SA+I+ ++PF +  ++   SP YMN +   P G  ++  +   M +G + MR +I
Sbjct: 247 AEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKII 306

Query: 184 NF 185
           + 
Sbjct: 307 DL 308


>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 332

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 103/191 (53%), Gaps = 8/191 (4%)

Query: 5   IKKRTAKFLDDFPNAL-DIIV---RSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K R A+ +  F N L D+I     ++R G      + ++  ++ DP  +EFRRV++   
Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  E++  ++R +P  ++    T +S+Q ++GGNL++ L  +   +R+R  +K ++ 
Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176
            L+ + + S+WII  LP  ++  +   +P YM  L      P+    + V + FM+ +G 
Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321

Query: 177 MVMRLMINFDV 187
             ++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332


>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
           DSM 5159]
 gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
           [Thermomicrobium roseum DSM 5159]
          Length = 323

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 104/182 (57%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R  +F++   + + ++  S+RAG  +   + ++  +S+ P+  EFRRV+    LG+ L
Sbjct: 143 RHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLGVPL 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  ++  +P +++    T I++  ++GGNL++ L  +   +R+R  +K +++ L+ +
Sbjct: 203 QDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQ 262

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              S +II  LP  ++ L++  +P Y+  L+  P   M +G A   M++G +VMR ++  
Sbjct: 263 QSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPWICMPIG-AVICMVLGFVVMRRIVAI 321

Query: 186 DV 187
           +V
Sbjct: 322 EV 323


>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
 gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 294

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 96/178 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + ++  P  LD  VRS+++G  ++DAV   V    +P+R    RV     +G+SL
Sbjct: 114 QQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMGVSL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+S    +    E   F+  + V  + GGN SE L NL +++R+R+    +++A++ E
Sbjct: 174 PDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A+++G LP  +       +PGY+  + +D  G ++L  A A  L G  +M  M+
Sbjct: 234 TRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRML 291


>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 329

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H   +R   F     +AL I+  ++RAG     A+  +  +   P+ +EF   +    
Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  ES+  +   +   ++    T + +Q Q+GGNL++ L N+SR +RDR  +K +++
Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  ++   +PGYM   + +P G  LL  AA   L G+ V++
Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322

Query: 181 LMINFDV 187
            +++ DV
Sbjct: 323 KIVDIDV 329


>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
 gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
          Length = 320

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 94/174 (54%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +  P+A+D++VRS+R G P S A+ +   +  DP+ +E   + +    G  + E++  M 
Sbjct: 147 EQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETAYGRDMGETLKAMA 206

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +  Q++ F +  +++Q   GGNL+E L  LS+++R R  +  +V+A++ EAK S  ++
Sbjct: 207 ERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAKWSGNLL 266

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            + P      +    P Y + ++  P       V AAF+++ ++VMR + N  V
Sbjct: 267 SAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMRALTNIKV 320


>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 324

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 98/170 (57%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +F    P ALD++ R+++AG      + ++  +   P+  EF + ++  + G+ +
Sbjct: 143 RKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEINYGMDV 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++S +   +   ++ FF   +++Q + GGNL+E +A ++ ++R+R  +  K++ LS E
Sbjct: 203 DRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAE 262

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            + SA+I+ +LPF ++ ++Y  +  Y+++L     G  ++  AA  M+IG
Sbjct: 263 GRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIG 312


>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 315

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 94/178 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +    FP  LD IVR++++G  +  A+++I  +   P+  E + V     LG+S+
Sbjct: 134 KQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLGISM 193

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            + +      + + E  FF   + +Q + GG L+  L  LSR++R R+  +AK++ L+ E
Sbjct: 194 RDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAE 253

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++ +A  +G  P       YF  P  M   +NDP G  +L ++   M+ G ++++ M+
Sbjct: 254 SRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSML 311


>gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 67

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 55/67 (82%)

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++  +M IGI VMR
Sbjct: 1   ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 61  NMVNFDI 67


>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 309

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 99/185 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR  KF D   ++L ++   +RAG  +  AV  +  Q+  P   EF R++    
Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L++++ +    M  ++ S+ S  I +  ++GG+L++ L  + R +R+R  ++ +V+
Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA+++ +LP  +  ++   SP Y+    + P G  ++      M +G + ++
Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302

Query: 181 LMINF 185
            +++F
Sbjct: 303 KIVSF 307


>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
 gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
          Length = 321

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 98/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR     +  P A++++VRS+R G P S A+A++  +  DP+ +E   + +    G  +
Sbjct: 140 KKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRDM 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  M   +  Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V A++ E
Sbjct: 200 GETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAE 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           AK S  ++ + P      +    P Y + ++  P     + +  AF+++ ++VMR +++ 
Sbjct: 260 AKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVDI 319

Query: 186 DV 187
            V
Sbjct: 320 KV 321


>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 301

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 2/184 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           + L  +R  +F   FP+AL++++ +V AG  +  AV+  VGQ+ D  V  EF+ + +   
Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVS-FVGQNLDNEVGREFKNMGDRLK 173

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  + + R  +  P  E  FF+  I      GG L   LA L R+L D + M+ K  
Sbjct: 174 LGESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKM 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA ++ ++P   + ++Y  +P  +N +++DP+G  +L       L+G+ ++ 
Sbjct: 234 AMTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVW 293

Query: 181 LMIN 184
           L++ 
Sbjct: 294 LLVK 297


>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 323

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  KF +  P+ L+++V  +RAG     A+  +  +   P+  EFRRV++   LG+ + 
Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  ++R +P  ++    T I+VQ ++GGNL+E L  +S  +R+R  +K +++ L+ + 
Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180
             S   +  +P  V  ++Y  +  YM          N P G++ L  AA  ++ G +VM 
Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316

Query: 181 LMINFDV 187
            + + +V
Sbjct: 317 KIGDIEV 323


>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 317

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 1/182 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K +   P+A+D IVRS++ G  V  A   +      P+ ++FR + E   +GL   
Sbjct: 136 RREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMAMGLPFE 195

Query: 67  ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             I    R  P L +V        +Q + GG L++ LA L+  +R R + + +V+A + E
Sbjct: 196 TVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAE 255

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + +A+I+G LP   + + +   P YM V  + P G  LL V       G +VMR M+  
Sbjct: 256 GRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVMRAMLRV 315

Query: 186 DV 187
            V
Sbjct: 316 KV 317


>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 300

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 99/182 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +    ++P+  EF+ + +   L
Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P   + ++ + +P  ++ ++NDP+G  +L       LIG+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293

Query: 182 MI 183
           ++
Sbjct: 294 LV 295


>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 300

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 99/182 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+KKR   F + FP+AL+I++ ++ AG  +  A++ +    +DP+  EF+ + +   L
Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +    + R  +  P  E  FF+  +      GG L   LA L R+L D + +  K  A
Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N +++DP G ++L        +G++++ L
Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293

Query: 182 MI 183
           ++
Sbjct: 294 LV 295


>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 325

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 81/147 (55%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR   F D   + + ++  ++R G      + ++   +  P+  EFRRV++   LG + 
Sbjct: 140 KKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVGLGRTT 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  ++R MP +++    T +++Q ++GGNL++ L  +   +R+R  +K ++Q L+ +
Sbjct: 200 EEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQTLTAQ 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYM 152
            + S W+I  LP  ++  +   +P YM
Sbjct: 260 GRISGWVITGLPIGLAIFITMINPEYM 286


>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 660

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R   F D  P+AL ++  S+R+G  V+ +V  + G    P+  E  R +    
Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  +++  +   M  +++ +    I +Q ++GGNLSE +   +  +R+R  ++ +++
Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA+++ +LP     L+  + P YM  L   P G  ++ +A   + +G + + 
Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 654 KVVKVEV 660


>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 283

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 99/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L ++R  +F+   P+AL++I  S++AG  V++A+  +  +   P++ EF+  +  Q L
Sbjct: 98  RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  + + +P  E       + +   +GGNL+E L  LS  LR +  M+ K+ +
Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +   +Y   P  M  ++ +P G  ++ V++  +  G M ++ 
Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277

Query: 182 MINFDV 187
           +I  DV
Sbjct: 278 IITIDV 283


>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
 gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
          Length = 325

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 92/177 (51%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A D++ R++RAG     A+ +   +   P+ SEF  V    + G+ + E+++
Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              R +P++++ F    + +Q + GGNL+E L N+  ++R R  +  K++ LS E +   
Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  +P  +  L+YF +P  ++ L   P G  LL  A     +G++ +R ++   V
Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325


>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 329

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R   F +   + + ++  S+R+G  +  ++ ++  ++  P+  EFRRV++   LGLSL +
Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++ ++R +P  ++    + I++Q+++GGNL+E L  ++  +R+R  +K +++ L+ +A+
Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183
            S +++  LP  ++ ++   +P YM  L+     P     + V +A M+I G   ++ ++
Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325

Query: 184 NFDV 187
           N ++
Sbjct: 326 NIEI 329


>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 282

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L N+P G   L V      +G + + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
          Length = 326

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 84/176 (47%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           T +     P A+D I R  RAG+P   A  +        +  E R +     LG+ L + 
Sbjct: 148 TEELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQV 207

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +      +PL E  FF+ ++ +  + GG L++ L  L+  LR+R  +  KVQA + EA+A
Sbjct: 208 LQESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARA 267

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           S  I+  L   V    Y  +P     L+ DP G  +LG AAA +  G+ V  LM+ 
Sbjct: 268 SIKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323


>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
          Length = 320

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +    G  + 
Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179
           K S   + + P     ++    P Y + +    R H        L+GV   F+ + + VM
Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGV---FLALNLFVM 312

Query: 180 RLMINFDV 187
           R++ +  V
Sbjct: 313 RILTDIKV 320


>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
          Length = 293

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 97/178 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++     ++  P  LD  VRS++AG  ++DAV   +  S +P+R+   RV     LG+ L
Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++A++ E
Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A I+G+LP  +       +P Y+  +  D  G ++L +A A  ++G +V+  M+
Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMM 290


>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 281

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 99/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           KH  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   L
Sbjct: 96  KHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVKL 155

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L E++  M R +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ A
Sbjct: 156 GVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKIDA 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K   WI+ ++P  +  ++ +  P  M  +++   G +L+ + A   ++GI+++R 
Sbjct: 216 LTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIRR 275

Query: 182 MINFDV 187
           ++N D+
Sbjct: 276 IVNIDI 281


>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 302

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61
           +L++KR   F + FP+AL+I++ +V +G  +  A+A  VGQS D  +  EFR + E   L
Sbjct: 118 YLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAY-VGQSLDNQIGLEFRDMGERLKL 176

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    +   R  +  P     FF   I      GG L   +A L R+L D + +  K  A
Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ SLPF    L+ + SP  ++ ++ DP G  +L        +G+ ++ L
Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296

Query: 182 MI 183
           +I
Sbjct: 297 LI 298


>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CMR15]
          Length = 325

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G+ + 
Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMG 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ LS E 
Sbjct: 205 DALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R ++   
Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324

Query: 187 V 187
           +
Sbjct: 325 I 325


>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 325

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 96/181 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G+ ++
Sbjct: 145 KRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYGVPMN 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ LS E 
Sbjct: 205 DALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R ++   
Sbjct: 265 RMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQIVRIH 324

Query: 187 V 187
           +
Sbjct: 325 I 325


>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 320

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 14/188 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +    G  + 
Sbjct: 140 KRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRDVG 199

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+A++ EA
Sbjct: 200 DALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEA 259

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-------MLLGVAAAFMLIGIMVM 179
           K S   + + P     ++    P Y + +    R H        L+G+   F+ + + VM
Sbjct: 260 KWSGKFLSAFPVVALIVINVGDPNYYDAV----RDHAYFIPACFLVGI---FLALNLFVM 312

Query: 180 RLMINFDV 187
           R++ +  V
Sbjct: 313 RVLTDIKV 320


>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
 gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
          Length = 308

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 94/176 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  +F   FP  ++ I R+V AG+ V  A+A +       +  EF  + +   +G+SL 
Sbjct: 127 QQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIGISLK 186

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ +    +P     FFS  + +  + GG L E L +LSR L +   +K K+++L+ E 
Sbjct: 187 QALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSLTAEP 246

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A ++  LP C+ +++YF SP    VL + P G+ +L      M +G+ ++ ++
Sbjct: 247 RMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302


>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 622

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 104/184 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615

Query: 181 LMIN 184
            +++
Sbjct: 616 KVVS 619


>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 623

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 104/184 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616

Query: 181 LMIN 184
            +++
Sbjct: 617 KVVS 620


>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
          Length = 325

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 94/172 (54%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A D+I R++RAG  +  A+ +   +   PV  E   V    + G+S++++++ ++  
Sbjct: 154 LPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGLIDR 213

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI+ +
Sbjct: 214 VPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILTA 273

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 274 LPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
 gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
          Length = 294

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 93/179 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR A F    P AL II   +R+G     A+A +     +P+  E +RVI   + G  L
Sbjct: 113 KKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRKL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES+  +       E+   ++ +++Q + GGNL+E +  ++  + DR N++ +++ L+ +
Sbjct: 173 EESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTTQ 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + S  +IG LP  +  ++ + SP YMN       G ++L V+      G ++++ ++N
Sbjct: 233 GRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291


>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 652

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 96/172 (55%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P +L ++  S+R+G  +  A+  I   + DP+  EF R +    +G  +++++ RM   
Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           M  + +      I +Q ++GGNL+E L   +R LR+R+++  +V+ALS E + SA+I+ +
Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           LP  +   + + + GY+++L   P G M+L      ++ GI  MR ++  +V
Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652


>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 332

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 99/185 (53%), Gaps = 4/185 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R   F +   + + ++  ++R G      + ++  ++  P  +EFRRV++   LG S  
Sbjct: 148 QRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVGLGRSTE 207

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  ++R MP  ++    T +++Q ++GGNL++ L  +   +R+R  +K ++  L+ + 
Sbjct: 208 EALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEISTLTAQG 267

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRLM 182
           + S+WII  LP  ++  +   +P YM  L      P+    + VA+ FM+ +G   ++ +
Sbjct: 268 RISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGYFAIQKI 327

Query: 183 INFDV 187
           I+ +V
Sbjct: 328 IDIEV 332


>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 325

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 94/173 (54%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ ++ 
Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI+ 
Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
 gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
          Length = 310

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 82/160 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            +R   F D FP+AL++I R+VRAG     A+ ++   S DP+  EFRR  +   +GLS 
Sbjct: 129 NRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLDVGLSA 188

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  M   + L +V  F+T ISV  + GG L E L  L+ ++RDR     ++++++  
Sbjct: 189 PKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLRSITSS 248

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
            + SA II  L   +        P Y +     P G  LL
Sbjct: 249 GRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLL 288


>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
 gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
          Length = 325

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 94/173 (54%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ ++ 
Sbjct: 153 QLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGLID 212

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI+ 
Sbjct: 213 RVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWILT 272

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 273 ALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 4/190 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           K  +K RTAK   +F   LD    ++  S+RAG     A+      +  P++ E  R++ 
Sbjct: 125 KMWVKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILN 184

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  +  S++     M  ++  + +  + +  + GGNL+E +  +++++RDR  ++ 
Sbjct: 185 ENRLGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIRE 244

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           KV A + E + S++I+ SLP  ++    F +PGY++ L +   G  L+G +     I  +
Sbjct: 245 KVHAYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFL 304

Query: 178 VMRLMINFDV 187
            MR++++  V
Sbjct: 305 WMRIIVDIKV 314


>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 161

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 89/161 (55%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG+ ++ A   +V +S  P+  EF  ++  Q LG++L +S++ + R +P    +   +
Sbjct: 1   MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            + + ++ GG L+EAL   S  +R R  M+ K+ AL+ + K  AW++G LP  +  ++  
Sbjct: 61  AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             P  M+ L +   G   L V A   ++G++++R ++  DV
Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161


>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 302

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LIKKR  +F   FP+AL+I++ +V AG  V  +++ +     + V   F+ + E   LG 
Sbjct: 119 LIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLGE 178

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A++
Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAMT 238

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA I+ SLPF    ++ F SP  +N ++ DP G  +L        +G+ ++ L+I
Sbjct: 239 SEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLLI 298


>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 272

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 101/185 (54%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  +F    P AL ++  ++RAG+ ++  +  +V QS  P+  EF  ++  Q LG
Sbjct: 88  QLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQRLG 147

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +   MP    S     + + SQ GGNL+EAL ++++ LR R  ++AK+QAL
Sbjct: 148 VPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQAL 207

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +  AWI+G+LP  +  ++    P  M +L + P G  +L +       G++++R +
Sbjct: 208 TSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIRRI 267

Query: 183 INFDV 187
           +  ++
Sbjct: 268 VRIEL 272


>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 316

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR        P+ALD++ R +  G P++  +  +     DP+ +EFR + +    G SL+
Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + R + +++  + S  + +Q   GGNL   L  L+R++R R  M+ +V A+S E 
Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A I+ ++P  +      T+P Y   + +DP    + G   A +L   +++R +++F 
Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315

Query: 187 V 187
           V
Sbjct: 316 V 316


>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 311

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 1/180 (0%)

Query: 4   LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L++ R  +  D  F   L  + R+V AG+ V  A+A I       +  EF  + +   +G
Sbjct: 127 LMRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIG 186

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L +++++    +P     FFS  + +  + GG L E L +LSR + D   +K K+++L
Sbjct: 187 IGLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSL 246

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A I+ SLP  +  ++YF +P     L   PRGH++LG     M +G+ ++ L+
Sbjct: 247 TAEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLL 306


>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 327

 Score = 90.5 bits (223), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR     D   +A+ +I  S++AG     AV ++  + + P+  EF ++ +  + G +
Sbjct: 145 IKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVNFGTT 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +++  +V  +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K +V+ ++ 
Sbjct: 205 TEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVKTVTA 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + + S  II +LP  +  +++  +  ++ VL  DP G ++LG +    +IGI  +  +++
Sbjct: 265 QGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFISRIVS 324

Query: 185 FDV 187
            +V
Sbjct: 325 IEV 327


>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
 gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 314

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR  +  GV+     IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313


>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
 gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
          Length = 654

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF    P+ L ++  ++ +G  ++ A+  +   S+ P   EF R +    
Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +S+++  M   M  + + + +  I +Q  +GGNL++ L   +  LR+R+++K +V 
Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SA+I+  LP  +   + +++P Y ++L     G ++L  +   M+IG + MR
Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 648 KVIQIEV 654


>gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 94/180 (52%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  KR   F   FP+AL+I++ +V AG  +  A + +       V  EF+ + +   LG 
Sbjct: 117 LQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLGE 176

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  + + R  +  P  E  FF+  I      GG L   LA L RIL D + +++K  A++
Sbjct: 177 NAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAMT 236

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA ++ ++P   + +V    P +++ ++NDP+G M+L       ++G+ V+ L++
Sbjct: 237 SEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLLV 296


>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
           BTAi1]
 gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
           sp. BTAi1]
          Length = 329

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 1/159 (0%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+T + F+D FP+A+D + R +RAGLP++ A+  +    S PV   F  + +   +G+ 
Sbjct: 145 QKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELRIGVP 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E++    R + L +  FF+  +++Q   GGNL+  L +LS I+R R+  + K +A + 
Sbjct: 205 LEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAKAATG 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           E + +A+ +G++P   +  +    P Y+  L  DPRGH+
Sbjct: 265 EIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHL 303


>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 314

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR  +  GV+     IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPRLLVATGVSQG---IGALLIRRIVNFE 313


>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 323

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 97/181 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  KF    P+++D++ R++RAG  V+ A+ V+  Q  +PV SEF  V   Q+ GL   
Sbjct: 143 QRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQNFGLPFR 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ ++   +P  ++ F  T + VQ + GGNL+E L   + ++R+R  ++ +V+  + + 
Sbjct: 203 DAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVKTKTAQG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +  I+  LP  +  L+   +P Y   L  DP G  +L   A  + +G   +  ++  +
Sbjct: 263 RLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFINKIVKIE 322

Query: 187 V 187
           V
Sbjct: 323 V 323


>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 302

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 90/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+KKR  +F   FP+AL+I++ +V AG  +  +++ +     + V + F+ + E   LG 
Sbjct: 119 LLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLGE 178

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A++
Sbjct: 179 PPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAMT 238

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA I+ SLPF     + F SP  +N ++ DP G  +L        +G+ ++ L+I
Sbjct: 239 SEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLLI 298


>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
           C54]
          Length = 281

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 92/176 (52%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL ++  ++RAG+ +  A+  +V Q   P+  EF  ++  Q LG+   E+++R
Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   M  +  +     +    Q GGNL+EAL ++++ L  R  ++A+++ L+ + +  AW
Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+G+LP  +   +    P  M  L + P G  +L V       G++++R ++  D+
Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281


>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 282

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 97/186 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + +KR     D  P+AL ++  ++RAG     A+  +V +S  P+  EF  ++    L
Sbjct: 97  KKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVRL 156

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L +++  M + +P+ +    +  I++  ++GGNL+E L +++R LR++  M+ K++A
Sbjct: 157 GVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++    P  M  L + P G   L V A   L+G   +  
Sbjct: 217 LTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAISK 276

Query: 182 MINFDV 187
           + + DV
Sbjct: 277 ITHIDV 282


>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 294

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 92/171 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++  P  LD  VRS+++G  ++DAV   +  ++ P++    R+     LG+SL ++    
Sbjct: 121 IEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARDF 180

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E   F+  + V  + GGN SE + NL R++RDR+    +++A++ E + +A +
Sbjct: 181 AELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTALV 240

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +G LP  ++      +P Y+  + ND  G +LL +A A  L+G +++  M+
Sbjct: 241 LGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRML 291


>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 282

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +  +  P+AL ++  S+RAG+  S A+ V+V     P+  E   V+  QH+G+  
Sbjct: 101 RRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMGVRA 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++    + +P+ +   F + +++  ++GGNL+E LA L+  LR R  M+ KV+AL+ +
Sbjct: 161 DEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQ 220

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            K    ++  LP  +   +       M  + +   G +++GV      +G  + + ++  
Sbjct: 221 GKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKIMTI 280

Query: 186 DV 187
           DV
Sbjct: 281 DV 282


>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
 gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
          Length = 299

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 95/181 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L +KR  +F D+ P+ +D ++R++R G P+      I  Q        F ++++   +
Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G ++++ +    + MP+ E  F + V+S+Q + GG L+  L  L   LR R  + A +Q 
Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++ +LP  V  +++ T   + N L+    G +++      +L G+ ++R 
Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293

Query: 182 M 182
           M
Sbjct: 294 M 294


>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 310

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 88/169 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R A F D   ++L ++  S+RAG  +  AV  +  +++ P   EF R++    +G  L 
Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   M   +  + +  I +  ++GGNL+E L  +   +R+R  ++ +V+ALS E 
Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K SA ++ +LPF +   +  T+P Y+        G++++      + +G
Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVG 298


>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 93/179 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R  + ++  P  LD  VRS+++G  +SDAV   +  +  P++    R+     LG+SL
Sbjct: 114 RVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQLGVSL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++           E   F+  + V  + GGN SE + NL R++R+R+    +++A++ E
Sbjct: 174 PDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A ++G LP  ++      +P Y+  + ND  G ++L +A    L+G +++  M+ 
Sbjct: 234 TRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLWRMLR 292


>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 282

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 95/182 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    LG+ +
Sbjct: 101 KKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIRLGIDM 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++AL+ +
Sbjct: 161 DIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIKALTSQ 220

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +    ++  LP  +  ++ F  P  M  L  +P G   L V      +G + +  + N 
Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSISKITNI 280

Query: 186 DV 187
           DV
Sbjct: 281 DV 282


>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 327

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 102/186 (54%), Gaps = 4/186 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   LGL  
Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++  L+ +
Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181
            + SA++I  LP  ++  +   +P YM+ + +    P     L VA   M+ IG   +  
Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321

Query: 182 MINFDV 187
           +++ +V
Sbjct: 322 IVDIEV 327


>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
 gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
          Length = 291

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  +R   F    P+A+ +I  +VRAG  ++ A+  +  +   P   EF  ++    
Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++L +++  + R M   ++  F   + + ++ GGNL+E L  L+  +R +  ++ K+ 
Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +   W++  LP  V   ++   P  M  L++  +G ++  V A   ++G++ +R
Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284

Query: 181 LMINFDV 187
            ++  D+
Sbjct: 285 RIMAIDI 291


>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 367

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 97/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   + + L
Sbjct: 186 QQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETRVNIPL 245

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++ L+ +
Sbjct: 246 EDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQ 305

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + S WI+G+LP  +  L+   +P Y+  L+  P G  LLG        G++V+R +I  
Sbjct: 306 GRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIRALIRV 365

Query: 186 DV 187
           DV
Sbjct: 366 DV 367


>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 284

 Score = 87.4 bits (215), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 98/184 (53%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  K     P+ L ++  S+RAGL  + A+  +   +  P+  EF  V+  Q +G+
Sbjct: 101 LKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMGV 160

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++      +P+Q+V+ F + +++  ++GGNL+E+L +L+  LR R  M+ KV++L+
Sbjct: 161 KLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSLT 220

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +    ++  +P  + T +    P  M+ L + P G  ++ VA     +G  +   ++
Sbjct: 221 AQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKIV 280

Query: 184 NFDV 187
             D+
Sbjct: 281 TIDI 284


>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 327

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 101/186 (54%), Gaps = 4/186 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   LGL  
Sbjct: 142 KQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLGLRT 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++  L+ +
Sbjct: 202 EDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQ 261

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGIMVMRL 181
            + SA++I  LP  ++  +   +P YM  + +    P     L VA   M+ IG   +  
Sbjct: 262 GRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFAIMK 321

Query: 182 MINFDV 187
           +++ +V
Sbjct: 322 IVDIEV 327


>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
 gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
          Length = 325

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 325

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  +   + P+AL  I  ++RAG  +S AV V+V     P+  EF  V++ Q LG+S 
Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVSF 164

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ ++QAL+ +
Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQ 224

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +    ++   P  +  ++Y   P  M +L +   G  +L V    + +G  ++R ++  
Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVAI 283

Query: 186 DV 187
           D+
Sbjct: 284 DI 285


>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 282

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    L
Sbjct: 97  KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++A
Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  
Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276

Query: 182 MINFDV 187
           + + DV
Sbjct: 277 ITHIDV 282


>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  +   + P+AL  I  ++RAG  +S A+ V+V     P+  EF  V++ Q LG+S 
Sbjct: 105 KKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVSF 164

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ +++AL+ +
Sbjct: 165 DDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQ 224

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +    ++   P  +  ++Y   P  M++L     G ++L V A  +++G  ++R ++  
Sbjct: 225 GRIQGLVMTLFPLLLMGVLYLMQP-TMSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVAI 283

Query: 186 DV 187
           D+
Sbjct: 284 DI 285


>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 295

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 94/178 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++          E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++  M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292


>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 295

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 94/178 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++          E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++  M+
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLWRML 292


>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 323

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 94/181 (51%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  KF     +AL I+  S+R+G     A+ ++  +   P+  EF   ++  + G    
Sbjct: 143 KRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMNWGTPTE 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  MV  +  +++    T + +Q Q+GGNL+E L  ++  +R+R  +K +++ L+ + 
Sbjct: 203 EALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQG 262

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + S  IIG LP  +S  ++  +  YM VL     G  ++  A  F ++G+ +++ +I   
Sbjct: 263 RISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIKKIIKIP 322

Query: 187 V 187
           V
Sbjct: 323 V 323


>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 294

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF     +AL +I  S++AG  ++ A+  +  Q+  P+  EFR +I+   
Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + +++  M R +  ++    +T I    Q GG L+  L  ++ ++R+R  +  KV+
Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+   +  A +I   P  +   +++ +P  +   + +P G  LL VA  F +IG +++R
Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 288 RIVTIEV 294


>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 294

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +    S+  +   +R+    H 
Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164

Query: 62  GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            L L  S+ R++++    MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +V+ ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284

Query: 178 VMRLMINFD 186
           ++R +  F 
Sbjct: 285 LIRQLTKFK 293


>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 322

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 94/182 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR +   +  P+A++++VRS+R G P   ++  +  + SDP+ SE   + +    G  +
Sbjct: 141 KKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAAYGRDV 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +ESI  M   + +Q++ F +  + +Q   GGNL+E LA L+ ++R R  +  KV+ ++ E
Sbjct: 201 AESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAE 260

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ S   +   P      +    P Y + +I+ P         A  + +  ++MR+++N 
Sbjct: 261 ARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMRVLVNI 320

Query: 186 DV 187
            V
Sbjct: 321 KV 322


>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 282

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 93/182 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    LG+ L
Sbjct: 101 KKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLGIDL 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++AL+ +
Sbjct: 161 DIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRALTSQ 220

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  + N 
Sbjct: 221 GRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKITNI 280

Query: 186 DV 187
           DV
Sbjct: 281 DV 282


>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
 gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
          Length = 300

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 95/182 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R  +F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   +A L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +  ++ DP G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293

Query: 182 MI 183
           ++
Sbjct: 294 LV 295


>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 282

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F     M  L ++P G   L V      +G   + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 RITNIDV 282


>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
           DSS12]
          Length = 311

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 90/172 (52%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F   FP  L  I R+V AG+ V  A+A +       +  EF  + +   +G+SL +++ 
Sbjct: 135 QFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGISLKQTLE 194

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +    +P     FF+  + +  + GG L E L +L R L D   +K K+++L+ E + +A
Sbjct: 195 QACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLTAEPRMTA 254

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            I+ SLP  + ++++F +P    VL N   GH +L    + + +G+ ++ ++
Sbjct: 255 LILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINML 306


>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
 gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
          Length = 281

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 92/158 (58%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G+ VS A+  IV  S  P+  EF  ++  Q LG+S   +++R+ + +P +  +  +  + 
Sbjct: 124 GVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALARLSQRVPSEASALVAAALR 183

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V +  GGNL+E L  ++R LR+R  ++ KV+AL+ + +  AWI+G+LP  ++ ++    P
Sbjct: 184 VATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAWIVGALPLLLAAVLDRMEP 243

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             M +L + P G  +L V A     G++++R +++ D+
Sbjct: 244 DAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281


>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 294

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +    S+  +   +R+    H 
Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164

Query: 62  GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            L L  S+ R++++    MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +V+ ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284

Query: 178 VMRLMINFD 186
           ++R +  F 
Sbjct: 285 LIRQLTKFK 293


>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +    S+  +   +R+    H 
Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFAL----SEQYQGSAKRLFLAMHD 164

Query: 62  GLSLSESISRMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            L L  S+ R++++    MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M++
Sbjct: 165 RLKLGHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMES 224

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +V+ ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++
Sbjct: 225 RVRTITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLL 284

Query: 178 VMRLMINFD 186
           ++R +  F 
Sbjct: 285 LIRQLTKFK 293


>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 295

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 94/179 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++          E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++  M+ 
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLWRMLR 293


>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 295

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 94/179 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL
Sbjct: 115 ERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQLGVSL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++          E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E
Sbjct: 175 PDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGE 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++  M+ 
Sbjct: 235 TRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLWRMLR 293


>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
          Length = 303

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G    E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299


>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 303

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G    E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299


>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 303

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G    E
Sbjct: 124 KTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGEDPDE 183

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+ EA+
Sbjct: 184 VLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEAR 243

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 244 SSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299


>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
 gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
 gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
          Length = 300

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 94/182 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+ +R   F + FP+AL+I++ +V AG  +  A++ +     + +  EF+ + +   L
Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ DP G ++L         G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293

Query: 182 MI 183
           ++
Sbjct: 294 LV 295


>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 322

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 96/176 (54%), Gaps = 4/176 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D  P+A++++VRS+R G P++ A+  +  +  DP+ +EF  + +    G ++ +S+  + 
Sbjct: 149 DQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVVDSLRDLA 208

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + +Q++ F +  +S+Q   GGNL+E L  L++++R R  +  +V+A++ E K S   +
Sbjct: 209 ERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPKWSGVFL 268

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLMINFDV 187
            + P  V  ++   +P Y + + + P    +      F L+G  ++ M++M    V
Sbjct: 269 SAFPVAVLVVIQVVAPTYYDNVKDSP--SFVPAALIVFALLGANVLFMKIMTTIKV 322


>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 300

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ KR   F + FP+AL+I++ +V AG  +  A+  +     + +  EF+R+ +   L
Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L + + ++ K  A
Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+  +P     L+ + +P  ++ +++DP G  LL        +G+ ++ L
Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVK 296


>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           642]
          Length = 294

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291


>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 294

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291


>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 294

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRML 291


>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
 gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
          Length = 300

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 94/182 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ D  G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293

Query: 182 MI 183
           ++
Sbjct: 294 LV 295


>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
 gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
          Length = 309

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++   K L   P  LD +VR +  G  V  A    V  +  P+R    +VI  Q  G  
Sbjct: 128 IRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGKE 187

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++ +M R   L E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS 
Sbjct: 188 LDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSA 247

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G LP  V   ++  + GY+ ++  DP G  +L  AA   + G
Sbjct: 248 ETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAG 298


>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 309

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 97/184 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I K+  +F     +AL I+   +RAG  ++ A+  +     DP+ SEFR       
Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +   +S++   M  +++   +  + +Q Q+GGNL+E L N+S+ +RDR  +K  V+
Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+G +P  +  ++   SP Y ++      GH+++ ++     +G + + 
Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302

Query: 181 LMIN 184
            +++
Sbjct: 303 KIVD 306


>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
          Length = 330

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K+L     A +++ R +R G  V++A    VG   DP+  EF R +     G+    +  
Sbjct: 157 KYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAFR 216

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            M     + E+  F   +++Q Q GGNLSE L  L+ ++R R  ++ K++AL+ E +  +
Sbjct: 217 EMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQS 276

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +  LP  V  ++YF +  Y   L+   R  +LLG     + +G + +R ++NF+
Sbjct: 277 RTLTVLPVVVFAMMYFLNRPYAEGLLAQWR--LLLGTVTC-VAVGTLWIRNIMNFE 329


>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
 gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
          Length = 302

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 88/179 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  + L   PN LD +VR    G  ++ +    +  +  P++      ++ Q+ GL L
Sbjct: 122 RKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAGLEL 181

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ R+ R   L E    ++V+++    GG     L  L++ LRDR+    ++ A+S E
Sbjct: 182 DQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAMSSE 241

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA  +  L   ++ ++   +P Y+  + ND  G MLL VA    + G  ++  M+ 
Sbjct: 242 ARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRMVK 300


>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 309

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 88/169 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R AKF     + + +++  +R G  V  +V     ++  P   E  R++    +G    
Sbjct: 129 RRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGKDSR 188

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +   +   M  ++  + S  I +  ++GG+L+E L  ++  +R+R  +K ++++LS E 
Sbjct: 189 LAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEG 248

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K SA+++ ++P  V+ ++ F + GY+NV +  P G ++L +A     +G
Sbjct: 249 KMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVG 297


>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 294

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 90/176 (51%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + +D  G ++L +A A  + G +V+  M+
Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRML 291


>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 303

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 93/180 (51%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R    +   P  +D + R++  G  V  AV  +      P+R+   RV+    LG  
Sbjct: 122 LQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGAG 181

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            ++++ +      ++E+   +  I + S  G +  E L ++ +++R ++  + ++ A++ 
Sbjct: 182 FADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTG 241

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E K +AW++   P  +   ++  +PGY+++++NDP G ++   A A  ++G+++   M+ 
Sbjct: 242 ETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMMK 301


>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
 gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
          Length = 319

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           KF +   + L ++  ++RAG     A  +I  +   P+  E + V+   +LG +L  ++ 
Sbjct: 143 KFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESALD 202

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            M R +   +     T + +Q Q+GG+L+  L  +S  + +R  M+ +V  L+ + + S 
Sbjct: 203 NMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG 262

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++  LPF ++ ++ F  P Y+  L+ D  G +++G+A    LIGI  ++
Sbjct: 263 IVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIK 312


>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 294

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 4/178 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYF--TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  +ST  YF   +P Y+  + +D  G ++L  A A    G +V+  M+
Sbjct: 236 MTAVVLALLP--ISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 291


>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 321

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 86/181 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +       G+ L
Sbjct: 137 QKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 196

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + A++ E
Sbjct: 197 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 256

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAW++  LP  V  L+   +  Y   + +D  G  ++GVAAA  + G++++  +   
Sbjct: 257 TRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLYRLAKL 316

Query: 186 D 186
           D
Sbjct: 317 D 317


>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 307

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L K+   +F + FP+AL+++  +V AG  +  AV V VG+S D  V  EF+R+ E   LG
Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 I 183
           +
Sbjct: 302 M 302


>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 307

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L K+   +F + FP+AL+++  +V AG  +  AV V VG+S D  V  EF+R+ E   LG
Sbjct: 123 LRKREKNRFEESFPDALNMMSSAVSAGEGIMQAV-VFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 I 183
           +
Sbjct: 302 M 302


>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
 gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
 gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 95/186 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + ++R  KF+D   + L I+   ++AG    +++  +V    +P+  EF +V+    +
Sbjct: 106 RMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+QA
Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +      I+  +PF +  +     P ++  + N   G +LL       +IG ++++ 
Sbjct: 226 LTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIKK 285

Query: 182 MINFDV 187
           ++   V
Sbjct: 286 LVTIKV 291


>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 308

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 92/180 (51%), Gaps = 1/180 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G
Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
           S E + SAW++G LP  V+  ++  + GY+ ++  DP G  +L  AAA  + G +M+ RL
Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304


>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 293

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + +D  G ++L  A A    G +V+  M+
Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRML 290


>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 294

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291


>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 294

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291


>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 304

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 93/181 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L +++  KF  +FP+AL+I+  ++ +G  +  A   +  Q ++ V +EF+ + E   +G
Sbjct: 120 KLKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL
Sbjct: 180 EDPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + + L+
Sbjct: 240 TSEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLI 299

Query: 183 I 183
           +
Sbjct: 300 L 300


>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 294

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 88/176 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 291


>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
 gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
          Length = 281

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 90/179 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K LIKKR  K +  FP+ L  +  ++++G  +  ++ +I   S  P+  EF   +    L
Sbjct: 95  KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ES++ +++  P   +S F T++ V  + GGNL+  L  LS  +R+   +  K+ A
Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           L+ +++  +WI+  LP  +  ++   +P   N       G+  L +     + G + M+
Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMK 273


>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
 gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
          Length = 304

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 92/180 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++  KF ++FP+AL+I+  ++ +G  +  A   +  Q  + V +EF+ + E   +G 
Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL+
Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + +  ++
Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300


>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 296

 Score = 80.9 bits (198), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 87/179 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L+ +R   +     +AL ++   +RAGL V  A+ ++V +   PV  EF  +++   
Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E    + + +P ++   F + I++  + GGNL+E    +  ++R+R  +K K+ 
Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             + +       I  +P+ +  + + + P  +  +   P G +L   A AF   G  V+
Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVI 288


>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300


>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 312

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 6/175 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G  
Sbjct: 131 VRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQRAGKE 190

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++ +M R   LQE+   ++V+ +  + GG     +   +  +RDR+  + ++ ALS 
Sbjct: 191 LDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELMALSA 250

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173
           E + SAWI+G LP  V   ++  + GY+ ++  DP G  +      L +A AFML
Sbjct: 251 ETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFML 305


>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
 gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
          Length = 338

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 1/179 (0%)

Query: 6   KKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++R A +     P+A+ ++  +VR+GLPV +A   +  +   P   +F  V    +LG  
Sbjct: 154 QRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLGRP 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++  + R   + E + F+  ++VQ + GG+L+E L NL   +R R  + A+ +AL+ 
Sbjct: 214 PAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAG 273

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           E   S+  +   P     ++Y ++P  +++L  DP G+ LL  A A +L+G +V+  M+
Sbjct: 274 EVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWMV 332


>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 305

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300


>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 322

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +       G+ L
Sbjct: 138 QKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 197

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + A++ E
Sbjct: 198 ENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 257

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAW++  LP  V  L+   +  Y   + ND  G  ++  AAA  + G++++  M   
Sbjct: 258 IRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLYRMAKL 317

Query: 186 D 186
           D
Sbjct: 318 D 318


>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 305

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 90/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300


>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
 gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
          Length = 282

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 97/182 (53%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R  +F +  P+ L  +  ++RAG  +  A+  IV QS  P+  EF  ++  Q +G+  
Sbjct: 101 KLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQRMGIGF 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ + R MP +      + +++ +Q GGNL+E L +++  LR R  + ++VQAL+ +
Sbjct: 161 EQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQALTSQ 220

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +  AWI+  LP  ++ ++++  P  M  L   P G  ++       ++GI  +R ++  
Sbjct: 221 GRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIRRIVAI 280

Query: 186 DV 187
            +
Sbjct: 281 TI 282


>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 321

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R   F     + L ++  S+RAG      + +I  +   P+ +EF  V+    
Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++  M + +  ++ S   T + +Q Q+GGNL+  L  +   + +R  ++ +V 
Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + K S  ++  +P  +      TSP Y+  L+    G M +G A    +IG +++ 
Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314

Query: 181 LMINFDV 187
            +++  +
Sbjct: 315 RIVDIKI 321


>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 318

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+A D++ R++RAG  V  A  VI    + P++ EF    E QHLG+    ++  + R 
Sbjct: 150 LPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRDLARR 209

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             + E+  F   + +  + GGNL+E L NL+ +LR R  +  +++AL+ E +  A ++ +
Sbjct: 210 TSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAVVLIA 269

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           LP  +  ++Y  +  Y  VL++ P   MLL       LIG + +R +I+ +
Sbjct: 270 LPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317


>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 95/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L ++   +F    P  +D ++R++R G P++D   ++  Q    +   F ++ +   +
Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +++ + +    + + E  F + V+S+Q + GG LSE LA L   LR R+ + A +Q 
Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ +A ++ +LP  +  +++ T   +   L+    G  +LG  +  + +G+ ++R 
Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288

Query: 182 MINFD 186
           +    
Sbjct: 289 LTRLQ 293


>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 96/186 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + +KR A+F+D   + L I+   ++AG    +++  +V    +P+  EF +V+    +
Sbjct: 106 RMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQV 165

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+QA
Sbjct: 166 GDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQA 225

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +      I+  +PF +  +     P ++  + +   G +LL       +IG ++++ 
Sbjct: 226 LTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIKK 285

Query: 182 MINFDV 187
           ++   V
Sbjct: 286 LVTIKV 291


>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 306

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 1/181 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64
           KKR+ +F     +AL +I  ++R G     +++ +     +P+ SE +RVIE   +  +S
Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ++  R+   +   E    +T + +Q + GGNL+  +  ++  +  R  +K KV++ + 
Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            A+ SA  + ++PF V     + SPGYM+     P    ++  AA    IG+ ++  M  
Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302

Query: 185 F 185
           F
Sbjct: 303 F 303


>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 310

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 10/186 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   F    P    ++  + +AGL +  A+ +   + +DP  +E R V E+  +G   
Sbjct: 129 EKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIKVGQPF 188

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+++ + + MP +E+    + + V ++ GG L  AL N+S  L +RK  + +V+ +  E
Sbjct: 189 EEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVRTILSE 248

Query: 126 AKASAWI-----IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             ++AW      +GSL F ++ L+    PG +  +     G ++LG A     IG +V+R
Sbjct: 249 TTSTAWTLLLMGVGSL-FLLNALM----PGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303

Query: 181 LMINFD 186
            M   D
Sbjct: 304 RMSRID 309


>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 310

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 94/181 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR     ++ P  +D++ RS  AG  +  A+A++  ++  P+  EFRR      + LS+
Sbjct: 129 KKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLDMNLSV 188

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
              +  +   + L ++   ++ + +  + GGNL   L  ++ ++RDR N + +++A +  
Sbjct: 189 PAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGA 248

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA ++  +      ++    P +++ L  DP G++LL +A    +IGI+ +  ++  
Sbjct: 249 GRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVSTLLRT 308

Query: 186 D 186
           D
Sbjct: 309 D 309


>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 308

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G  
Sbjct: 127 VRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAGKE 186

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ ALS 
Sbjct: 187 LDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSA 246

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML------LGVAAAFML 173
           E + SAWI+G LP  V+  ++  + GY+ ++  DP G  +      L +A AFML
Sbjct: 247 ETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFML 301


>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 198

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +      LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 20  RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 80  AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+
Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRML 195


>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 281

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 99/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K+  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   L
Sbjct: 96  KYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVKL 155

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L E++  M + +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ A
Sbjct: 156 GVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDA 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K   WI+ S+P  +  ++    P  M  +++   G++L+ V A   ++GI+++R 
Sbjct: 216 LTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIRR 275

Query: 182 MINFDV 187
           ++N D+
Sbjct: 276 IVNIDI 281


>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
 gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
          Length = 293

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 82/156 (52%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD +VRS+ AG  + DA+   V  + DP+R  F        LG+ L
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +     ++E+   +  +SV  + GGN ++ L  + R++ +R+ +  ++ A++ E
Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            + SA+++  +P  +   +  ++PGY+  +  D  G
Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSG 268


>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
          Length = 295

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 84/158 (53%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            E + SA+++  +P  +   +  ++PGY+  +  D  G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269


>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
 gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
 gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
 gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
 gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
          Length = 294

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 84/158 (53%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            E + SA+++  +P  +   +  ++PGY+  +  D  G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269


>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
 gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 294

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 84/158 (53%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        LG+
Sbjct: 112 LYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVLLGI 171

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ A++
Sbjct: 172 HLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLHAMT 231

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            E + SA+++  +P  +   +  ++PGY+  +  D  G
Sbjct: 232 GETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTG 269


>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 327

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 82/181 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K   +     P  LD  VR V  G  V  A  +    + DP++S   +       G+ L
Sbjct: 143 QKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGMDL 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + A++ E
Sbjct: 203 ENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMTAE 262

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            + SAW++  LP  V  L+   +  Y   + ND  G  ++  A A  + G++++  M   
Sbjct: 263 TRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMAKL 322

Query: 186 D 186
           D
Sbjct: 323 D 323


>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
 gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
          Length = 294

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  D  ++  +R+   +       +S SR
Sbjct: 123 FPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDPVTVFEDSYSR 182

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T+I      GG + E ++ L RI+ D K M+ K +A++ EA+ SA 
Sbjct: 183 Y----PYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSAM 238

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+ S P      + FT P   + LINDP G  +L       LIG++++  ++
Sbjct: 239 IVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLM 290


>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 304

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 91/181 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L  ++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +G
Sbjct: 120 NLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIG 179

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL
Sbjct: 180 EDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNAL 239

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA II  LP     ++ FTSP   + ++ +  G  +     A  L+G   + L+
Sbjct: 240 TSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWLI 299

Query: 183 I 183
           +
Sbjct: 300 L 300


>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 306

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 88/175 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I KR           L I   S+R+G+ ++ A+A  +G+ +  +  E +R+     
Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S ++++ + +  +P+ E         +  QLGGNL+E   N+   + +R   +  ++
Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A + +AK  A + G +PF V  ++   SP Y+  +++ P G M+L ++   + +G
Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLG 293


>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
 gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score = 77.4 bits (189), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 2/182 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L K+   +F D FP+AL+++  +V +G  +  A+ + VG S D  V  EF+R+ E   LG
Sbjct: 119 LGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAI-IFVGASLDGKVGKEFKRMGEQLQLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++   ++++ K  AL
Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ S+PF    ++ + SP     ++ +P G  +L        IGI+ + L+
Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297

Query: 183 IN 184
           + 
Sbjct: 298 MK 299


>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
 gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 83/165 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M  L +++  +F   FP+AL+++  +V +G  +  ++  +       V  EF+R+ E   
Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S      +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  
Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           AL+ EA+ SA I+ ++PF    ++ + SP   + ++N P+G  +L
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPIL 284


>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
          Length = 289

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 110 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 169

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 170 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 229

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
           ASA II +LP     ++  TSP   N ++ +  G     ++L+  A  F  I  M++R
Sbjct: 230 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 286


>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
 gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
          Length = 304

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 6/178 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L   +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
           +SA II +LP     ++  TSP     ++ +  G     ++L+     F LI  M++R
Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLIS-MILR 301


>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
          Length = 304

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDD 184

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
           ASA II +LP     ++  TSP   N ++ +  G     ++L+  A  F  I  M++R
Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301


>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 304

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 125 QAQRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDD 184

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 185 VLARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEAR 244

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVAAAFMLIGIMVMR 180
           ASA II +LP     ++  TSP   N ++ +  G     ++L+  A  F  I  M++R
Sbjct: 245 ASAKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFI-YMILR 301


>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 284

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 89/185 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L K+R  +  D  P+ L ++  ++R G  +   +  +    S P+  E   V+  Q LG
Sbjct: 100 YLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQRLG 159

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   E++S +   +  Q+     + + +  ++GGNL++ L  L   +R R  M+ K++AL
Sbjct: 160 VPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRAL 219

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++ +LP  +   +    P     L +  RG  +L +A    ++G   +R +
Sbjct: 220 TSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIRKI 279

Query: 183 INFDV 187
           ++ +V
Sbjct: 280 VSIEV 284


>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
           splendidus LGP32]
 gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
           splendidus LGP32]
          Length = 306

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 88/177 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298


>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
          Length = 313

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 1/179 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+   K R A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +    
Sbjct: 129 MRRTTKLR-AQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ 
Sbjct: 188 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A + E + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++
Sbjct: 248 ATTSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 306


>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
 gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
          Length = 306

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 88/177 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLII 298


>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 315

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 93/182 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +  +LG ++
Sbjct: 134 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLNLGRTV 193

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+ +  E
Sbjct: 194 DDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 253

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             A+A+ +  L      LV  ++ G +  +   P G  L+ ++ A   +G +V+R +   
Sbjct: 254 VNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIRRLGRI 313

Query: 186 DV 187
           +V
Sbjct: 314 EV 315


>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
 gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
          Length = 294

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 91/174 (52%), Gaps = 8/174 (4%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F    P  +D ++R++R G P++D    I  Q +   R    R+    H  L + + ++
Sbjct: 118 QFRTGLPEVIDGMIRALRVGAPLAD----IFQQVARQQRGLMSRLFAQMHDELQVGQPVA 173

Query: 71  RMVRY----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++R     + + E  F + V+S+Q + GG LS+ LA L   LR R+ + A +Q ++ E+
Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + SA ++ +LP  +  +++ T   +   L+    G  ++G  +  + +G+ ++R
Sbjct: 234 RNSAKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIR 287


>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 318

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           K  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G+ L 
Sbjct: 139 KLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSGMDLD 198

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A + E 
Sbjct: 199 RALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSET 258

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++
Sbjct: 259 RMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLL 311


>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 304

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +G 
Sbjct: 121 LKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLIGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL+
Sbjct: 181 APDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L++
Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300


>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 289

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 97/185 (52%), Gaps = 1/185 (0%)

Query: 4   LIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L+++R    ++   P+AL +I   +RAG+ ++ A+  +V +   P+  EF   +    LG
Sbjct: 105 LLRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLG 164

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   + +  ++     + + ++ GG+L+EAL   +  +R +  M+ K+ AL
Sbjct: 165 IPLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGAL 224

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K  A ++G LP  +  ++    P  M  L + P G   L V A   ++G++++R +
Sbjct: 225 TAQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRI 284

Query: 183 INFDV 187
           +  DV
Sbjct: 285 VAIDV 289


>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 241

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K   + +   P  +D +VR +  G     A  + +  +  P+R    R       G+ 
Sbjct: 60  LQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGVD 119

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ A+S 
Sbjct: 120 LDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSA 179

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAWI+G LP  V T +   +P Y   + ND  G ML+  +A   L+G
Sbjct: 180 ETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLG 230


>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 291

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEF-----RRV 55
           +I  R  K ++   +A+      VR  L V ++++V +    QSS P+  EF     RR+
Sbjct: 104 IIDYRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRI 163

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G  ++ES++++     L E+  F T I    + GG+L+  L+NL   +R R  +
Sbjct: 164 AN----GAGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAV 219

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +V+  + + +ASAW++G LP  V+++V   S  YM   I +P G  LL   A   + G
Sbjct: 220 MREVRGSTSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFG 279

Query: 176 IMVMR 180
             +MR
Sbjct: 280 AFMMR 284


>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
           damselae]
 gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae]
          Length = 306

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 2/181 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L K+   KF + FP+AL+I+  ++ +G  +  A+ V VG++ D  V +EF  + E   LG
Sbjct: 123 LQKRERKKFEESFPDALNILTSAISSGESIIHAI-VFVGKTLDGAVGNEFSLMGERLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +      GG L + ++ L+RI+ D + ++ K  AL
Sbjct: 182 ESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKYAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ ++PF    ++ + SP     ++ +P G  +L        IGI ++ L+
Sbjct: 242 TSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVWLL 301

Query: 183 I 183
           +
Sbjct: 302 M 302


>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 306

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           ++  +F   FP+AL+++  +V +G  +  ++ + VG+S +  V  EF+R+ E   +G S 
Sbjct: 126 RQQKEFEMAFPDALNMLASAVSSGESLMHSI-IFVGKSLEGSVGEEFKRMGERLQMGESP 184

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  AL+ E
Sbjct: 185 DTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSE 244

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           A+ SA I+ ++PF    ++ + SP   + ++N P+G  +L
Sbjct: 245 ARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPIL 284


>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
 gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
          Length = 295

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 93/182 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R+ KF+   P+AL  +  ++++GL +  ++  +V    +P+  EF +V+    +G  L
Sbjct: 114 KNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYRIGTDL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++S   + + +   EV   ++ I +   +GGNL+    NL+  LR+   ++ K++A++  
Sbjct: 174 NDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIKAMTAM 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +   +  ++P  V+ + +      M +L +   G + LG+      +G+  ++ ++N 
Sbjct: 234 GSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIKKIVNV 293

Query: 186 DV 187
           DV
Sbjct: 294 DV 295


>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
 gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
          Length = 318

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 5   IKKRT----AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           I +RT    A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +    
Sbjct: 133 IMRRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYAR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ 
Sbjct: 193 SGMDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELA 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A + E + SAW++G LP   + L+   SP +   ++++P GH +L +A    L+G  ++
Sbjct: 253 ATTSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLL 311


>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
 gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
          Length = 308

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 1/155 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F  +FP+AL+++  SV AG  +  A+  +     + V  EF+R+ E  ++G S      +
Sbjct: 132 FERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLNIGESTDAVFRK 191

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P     FF   + V    GG L   +  L+R+L + ++++ K +A++ EA+ S++
Sbjct: 192 ACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEARMSSY 251

Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLL 165
           I+ ++PF  +  ++   SP   + ++NDP G  LL
Sbjct: 252 IVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLL 286


>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 283

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  ++RAG  V  AV   V  +  P++ E   ++    LG SL E++    R  P  E
Sbjct: 115 GVMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPE 174

Query: 81  VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
               +  +++  ++GG  + +AL +++  +R+R  +K +V+A +   + SA ++G++P  
Sbjct: 175 TRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLW 234

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              +++F +PG++  L+  P G     V  A +++G ++
Sbjct: 235 CLGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273


>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
 gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
          Length = 317

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +RT       P A   I R++RAG  +  A+ ++      P+  EF    E QHLG
Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++   ++  MVR + + E+  F+  + VQ + GGNL+E L  L+ ++R R  ++ +V+AL
Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +  A ++ ++P  V   +   +P Y +VL       +L+G A +   IG  ++  +
Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWE--HYEILIGCAIS-QCIGAFLISRI 312

Query: 183 INFD 186
           +N D
Sbjct: 313 VNID 316


>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 330

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++K   + +   P  +D +VR +  G     A  + +     P+R    R       G+ 
Sbjct: 149 LQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGVD 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ A+S 
Sbjct: 209 LDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMSS 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAWI+G LP  V T +  ++P Y   L ND  G ML+  A    L+G
Sbjct: 269 ETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLG 319


>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 297

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 88/175 (50%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R    ++  P  +D + +    G  ++ A+   +  +   VRS    V     LG  +
Sbjct: 116 QRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLELGAPV 175

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K +++A   E
Sbjct: 176 ADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELKAAISE 235

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AK S  ++  +P     ++   +P Y++  + DPRGH L  VA     +G++VMR
Sbjct: 236 AKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290


>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 304

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 89/180 (49%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++   F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +G 
Sbjct: 121 LKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLIGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL+
Sbjct: 181 DPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L++
Sbjct: 241 SEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWLIL 300


>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
 gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
          Length = 337

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G
Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326


>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 316

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F    P+ L +    +RAG  +  A+     ++  P+  E  R++    
Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L ES++ + R    ++  + S  I +  ++GG+L+E L ++   +RDR  +K +V+
Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ALS E + SA ++ +LP  +   +   +P Y  V 
Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVF 284


>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
          Length = 337

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 156 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRGGVE 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 216 IDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 275

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G
Sbjct: 276 ETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFG 326


>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 316

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 85/161 (52%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  +R A+F     + L ++  S+RAG  +  AV  +  ++  P + EF R++    LG 
Sbjct: 133 MTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVRLGR 192

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++      +  ++  + +  I +  ++GG+L+E L +++  +R+R  +K +V+ALS
Sbjct: 193 DLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVRALS 252

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
            E + SA+++ +LP  +   +   +  Y+  L   P G ++
Sbjct: 253 AEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIM 293


>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 297

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 69/121 (57%)

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG  +++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K ++
Sbjct: 170 ELGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKREL 229

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A   EA+ S  ++  +P     L+   +PGY++  + DPRGH L  VA A   +G++VM
Sbjct: 230 KAAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVM 289

Query: 180 R 180
           R
Sbjct: 290 R 290


>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 300

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R        P AL  +  +VR+G  +S+A  ++  +   P+  EF    +   LG +   
Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++RM   +PL E   F+T + V  + GGNLS     +S   RDR++++  + A++  ++
Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240

Query: 128 ASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM-I 183
            SA+  ++G +   V+ L +   P Y+   + +P+G  LL +A    ++G I V R++ +
Sbjct: 241 LSAFGMVLGGI-IAVAFLTWL-EPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298

Query: 184 NF 185
           N+
Sbjct: 299 NY 300


>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
 gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 281

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R +
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
           P  +  ++    P  M  L      H L G AA  +++     GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
 gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 321

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314

Query: 181 LMINFDV 187
            M+   V
Sbjct: 315 SMMKVSV 321


>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 309

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 4/145 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H+I+ R  K +   P+ LD++  SV+AGL +  A+  +V +   P+  EFRR++    
Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++   S+  M R   +Q+V  F   +    +LG ++S+ L   +  +RD +  +A+ Q
Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A+    KA   +I  L FC+   ++
Sbjct: 273 AM----KAPVKMIFPLVFCIFPAIF 293


>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 287

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 302

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 88/178 (49%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           T + ++D P  +D + + +  G  +  A+A  +  SS  V +     I    LG  L E+
Sbjct: 124 TEQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEA 183

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + ++   + L E+S  ++ I V  + GG L+  L+N++ ++R+R  +  ++ A + E + 
Sbjct: 184 LQQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRV 243

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           SA ++  +P  ++     ++  Y++  ++  RG  L  VA A  LIG   M  +   D
Sbjct: 244 SAKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301


>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 301

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KK+  +F  +    L ++ R+V AGL V  A+  +    +  +  EF  + +   LG+SL
Sbjct: 118 KKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGISL 177

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++      +P +   +FS  + +    GG L E L NLSR + D + M  KV++++ E
Sbjct: 178 RQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAE 237

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            + +A  +  LP  +  +V +       +L+    G  +L   AA +  G
Sbjct: 238 PRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFG 287


>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 312

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 67/124 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT  F+   P    ++  + +AGL +  A+ + V +  DP R E RRV +   LG SL 
Sbjct: 132 KRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLALGRSLD 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V  L  + 
Sbjct: 192 DALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQV 251

Query: 127 KASA 130
           K +A
Sbjct: 252 KVTA 255


>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 287

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
 gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
          Length = 338

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G+ 
Sbjct: 157 ISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVE 216

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +   ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 217 IDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAMSA 276

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA    ++G
Sbjct: 277 ETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLG 327


>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 305

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 2/177 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L ++   +F + FP AL+++  +V +G  +  A+ + VG + D  V  EF+ + +   LG
Sbjct: 122 LQRREKKQFEEAFPEALNMLTSAVSSGESIMHAI-IFVGTALDGEVGKEFKLMGDRLRLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++ D + ++ K  AL
Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + EA+ASA I+G++PF    L+ + SP     ++  P G  +L        IGI ++
Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISII 297


>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 318

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311

Query: 181 LMINFDV 187
            M+   V
Sbjct: 312 SMMKVSV 318


>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
 gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
          Length = 311

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K +   P  LD +VR    G  +  A    V  + +P+R    R       G+ L 
Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +  R   LQE+   + VI V  + GG     L  ++  +RDR+  + ++ ALS E 
Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + SAWI+G LP  +   +   +      ++ DP G  LL  A     IG
Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIG 300


>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
 gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
          Length = 304

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K +  +F     N L +I R+V AGL V  A+  +       +  EF  + +   LGLSL
Sbjct: 120 KMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLGLSL 179

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+      +P     +FS  + +    GG L + L +LSR + D + M+ KV++L+ E
Sbjct: 180 RQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSE 239

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            + +A  +  LP  +   +Y   P  +  L N   G  +L  A
Sbjct: 240 PRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYA 282


>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 308

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K   + L   P  LD +VR +  G  V  A       +  P+R+    + + Q  G  L
Sbjct: 128 RKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAGKDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + R   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 188 DAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAE 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +M+ RL
Sbjct: 248 TRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304


>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLRTGVE 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 209 IDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  + + V  T+P Y+  + NDP G MLL  A    L G
Sbjct: 269 ETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAG 319


>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 302

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG  +
Sbjct: 119 RQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLALGHGM 178

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++     +P +   +F+  + +    GG L + L +LSR L D + M+ KV++L+ E
Sbjct: 179 KHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAE 238

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            + +A  +  LP  +  +V + +P    VLI    G  +L   A  ++IG + ++LM
Sbjct: 239 PRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQLM 295


>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 275

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R        P+ L +I   +RAG     A+   V +S  P+  EF  ++    LG+ L 
Sbjct: 95  RRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIRLGIDLD 154

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  + + +P+ +    +  + +  ++GGNL++AL +++  LRD+  M+ K++AL+ + 
Sbjct: 155 VAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQG 214

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +    ++  LP  +  ++    P  M  L   P G   L V AA  L+G
Sbjct: 215 RMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLG 263


>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 289

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 92/177 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L   ++AK      +A+D+++ ++ AG  V+ A+A  + +SS P++ +   ++    LG
Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                    + + +PL+    FS+ ++V  ++GG+L+  LA+  R +RDR  +  ++Q+ 
Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             +++ S   I  L + ++ +V+  SP  M   +N   G  ++  +     +GI+ M
Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWM 281


>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 293

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   +F + FP  + I+  +  +G  +  A+       S  +  EF  +    H  L++
Sbjct: 112 RRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAI----HKRLAI 167

Query: 66  SESISRMV-----RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            E  + +      RY P +E  FF T+I V    GG + E +  L R++ D K M+ K  
Sbjct: 168 GEDANSVFEDSYSRY-PYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKS 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           A++ EA+ SA I+ S P      + F  P     L+NDP G M+L
Sbjct: 227 AMTSEARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMIL 271


>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 320

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  + L   P  LD +VR +  G     A  + +    DP+    ++          L 
Sbjct: 141 KRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSASPDLG 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ ++ R   L E    + V  +  + GG     L  +S  +RDR++ + ++ ALS E 
Sbjct: 201 QAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEI 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + SAW++  LP  V  L+   + GY   + ND  G  ++ VAAA   +G  ++
Sbjct: 261 RMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLL 313


>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 341

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 90/182 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   LG S+
Sbjct: 160 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLALGRSV 219

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  +L NL++ L DRK  + +V+ +  E
Sbjct: 220 DDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSE 279

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             A+A+ +  L      L+  ++ G +  +   P G +L+ ++     +G  V+R +   
Sbjct: 280 VNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIRRLGKI 339

Query: 186 DV 187
           +V
Sbjct: 340 EV 341


>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 308

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+    + + Q  G  L
Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAGKDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +M+ RL
Sbjct: 248 TRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304


>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
 gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
          Length = 335

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P+AL  +     AGL V  A A +  ++  P+R  F  V     LG S+ E++ R  R  
Sbjct: 164 PDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELGRSVDEALERFRRAS 223

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            L E+SF +  + VQ   GG+ S  + +    +     ++  ++  + +AK SA ++  +
Sbjct: 224 SLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQTAQAKLSAQVVSIM 283

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    PG+M+       G  LL  AAA  + GI ++  +++ D+
Sbjct: 284 PIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRVLDVDI 334


>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
 gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
          Length = 308

 Score = 70.9 bits (172), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 96/181 (53%), Gaps = 1/181 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           K T +  +    A  ++  + ++G+ ++  + V+  + + P R EF+ + +   LGL   
Sbjct: 129 KYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGLDFE 188

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++ M + +  +E   F + + +Q + GGNL++ L  +++ L +RK ++  ++  + E 
Sbjct: 189 RALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATAEQ 248

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  ++I+ ++P  +  ++     G+++++   P G +L+ +    M + ++++R + N  
Sbjct: 249 RFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVTNIK 307

Query: 187 V 187
           V
Sbjct: 308 V 308


>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 291

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS----LSESISR 71
           FP  + I+  +   G  +  ++       +  +  EF+ + +   LG        +S SR
Sbjct: 120 FPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPMSVFEDSYSR 179

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T+I      GG + E +  L R++ D K M+ K +A++ EA+ SA+
Sbjct: 180 Y----PYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEARMSAF 235

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGVAAAFMLIGIMVMR 180
           I+ S P      + F  P   + L+NDP G    + + G  A  MLI   +MR
Sbjct: 236 IVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288


>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
          Length = 295

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+   + 
Sbjct: 113 QRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ K +
Sbjct: 173 AMAVFHDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++ 
Sbjct: 229 AMTSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 224

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  + +   P+ LD IVR V  G  V  A    +  + +P+RS    V      G+ 
Sbjct: 43  IQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLRGGVE 102

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 103 IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 162

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  + + V  T+P Y++ + NDP G  LL VA    L G
Sbjct: 163 ETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGG 213


>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 282

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 92/182 (50%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R A      P+ L +   ++RAG   + A+  +V ++  P+  E   ++    LG+ L
Sbjct: 101 KRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGIDL 160

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + R +P+ +    +  +++  ++GGNL+EAL +++R L  +  M+ K++AL+ +
Sbjct: 161 DIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALTSQ 220

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +    ++  LP  +  ++ F  P  M  L ++  G + L V A    +G   +  + N 
Sbjct: 221 GRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKITNI 280

Query: 186 DV 187
           DV
Sbjct: 281 DV 282


>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
 gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
          Length = 281

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 89/185 (48%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + +  KR        P  L  +   +++G+ + +AV  +  +   P+  E   +I    L
Sbjct: 95  RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++   R +P+  ++     +++  + GG  S+ L  L+  L  ++ ++ + QA
Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS + +  AW++  +P  +  L+ +  P +   L N   G + LGVA    LIG M+++ 
Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274

Query: 182 MINFD 186
           ++N D
Sbjct: 275 ILNTD 279


>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 326

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVE 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E      V+ +  + GG     L  +S  +RD ++ + ++ A+S 
Sbjct: 205 IDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMSA 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++  +P  V + V  TSP Y   + ND  G  L+ +A A   +G
Sbjct: 265 ETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMG 315


>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
           [Achromobacter xylosoxidans A8]
 gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
           [Achromobacter xylosoxidans A8]
          Length = 281

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 81/148 (54%)

Query: 40  IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
           +V QS  P+  EF  ++  Q +G+    ++  +   MP    +     + + +Q GGNL+
Sbjct: 134 VVEQSGAPLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGGNLA 193

Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           EAL ++++ LR R  ++AK+ AL+ + +  AWI+GSLP  +  ++    P  M +L + P
Sbjct: 194 EALESIAQTLRARLQLQAKLLALTSQGRLQAWIVGSLPLLLLAVLDRLEPEIMGLLWHTP 253

Query: 160 RGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            G  +L + A     G++++R ++  D+
Sbjct: 254 VGWGVLTIVAVLETTGMLLIRRIVRIDI 281


>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 286

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  + L   P  +D + R+ R G  +   + ++   +  P+  E  R +    +G++++
Sbjct: 104 RRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQMGVTMN 163

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +     +  +   +T +SV  Q GG+L   L  L+R LRDR     +++A++  +
Sbjct: 164 EALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLRAITAGS 223

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +A+A ++  LP  +     F  P Y+  L+    G  +
Sbjct: 224 RATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFI 261


>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRV 55
            +I++R       F +AL  +  +V+AG  V  AV   V       G+ +D V  EFR +
Sbjct: 67  RMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIV-EEFRYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
              QH+ + L E    +     ++++  F++V     + GG+++  +  +SR+L D+ ++
Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV-----AAA 170
           K +++A     K+   I+  +P  +   +  TSPG+++VL  +P G   + +     AAA
Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245

Query: 171 FML 173
           + L
Sbjct: 246 YWL 248


>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 290

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F D FP  L ++  +V AG  +  A+          +   F R+    +LG       + 
Sbjct: 115 FEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPERVFND 174

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  +E  FF  V+ V  Q GG L   +  LSRI+ + KNM  +  A++ EA+ SA 
Sbjct: 175 AWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAK 234

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+ SLP      + + SP   + +++DP G ++L    A   IG++++ +++
Sbjct: 235 IVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILL 286


>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 307

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 92/177 (51%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++RTAKF++  P    ++  +  AGL +  A+A++  +  +P RSEF +V      G SL
Sbjct: 126 QRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLRFGASL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  +  ++  +EV+   + + V ++ GG+L  AL  ++  L +RK  + +V  +  +
Sbjct: 186 QTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVTTILSQ 245

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + A+A++I  +   +   +    PG + ++ +   G + L    +   +G +V+R M
Sbjct: 246 SLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIRQM 302


>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 314

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 88/181 (48%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   LG S+ 
Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSVD 193

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  + R +P +E+    T +++ ++ GG +  +L NL+  L +RK  + +V+ +  E 
Sbjct: 194 EALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R +   D
Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313

Query: 187 V 187
           V
Sbjct: 314 V 314


>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
 gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
          Length = 329

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G+ 
Sbjct: 148 ISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTGVE 207

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +   ++E     +V+ +  + GG     L  +S  +RD +  + +++A+S 
Sbjct: 208 IDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSA 267

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA     IG
Sbjct: 268 ETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIG 318


>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 199

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 3   HLIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57
            L ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+  
Sbjct: 14  KLGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLAR 73

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            + +     +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ 
Sbjct: 74  GEDVMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQ 129

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           K +A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ 
Sbjct: 130 KKKAMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMF 189

Query: 178 VMRLMI 183
           ++  ++
Sbjct: 190 IIWWLM 195


>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
          Length = 308

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G  L
Sbjct: 128 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAGKDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 188 DAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLIL 301


>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 295

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+   + 
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +     +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++ 
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
 gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 295

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+   + 
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +     +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++ 
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 295

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+   + 
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +     +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++ 
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 295

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF    +R+   + 
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +     +S SR     P +E  FF ++I      GG + E ++ L R + D   M+ K +
Sbjct: 173 VMAVFQDSYSRY----PYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++ 
Sbjct: 229 AMTSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 206

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 25  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 84

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 85  IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 144

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 145 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 195


>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 237

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 56  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 115

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 116 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 175

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 176 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 226


>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 296

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 1/172 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           KF +    A+ +I  ++RAG  V+ A+  +    SDP++SEFRR+      G  + E++ 
Sbjct: 120 KFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDIRAGTPVPEALD 179

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           ++      +++  F+T + +  Q GG+L++   N+ + +R R   +  +++ +   +  +
Sbjct: 180 KVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIES 239

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            I+  LP  +   +   SP +     + P G  L+ +A     +  ++MR M
Sbjct: 240 QIMVGLPVFMMAALLAISPSHRE-FYSQPSGWALIALAVVLDTLAYLMMRKM 290


>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 211

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 30  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 89

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 90  IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 149

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 150 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 200


>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
 gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
          Length = 308

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G  L
Sbjct: 128 RRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAGKDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 188 DAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAE 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +M+ RL
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304


>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 215

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 34  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 93

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 94  IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 153

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 154 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 204


>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 216

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 35  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 94

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 95  IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 154

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 155 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 205


>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 312

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 84/169 (49%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT  F++  P    ++  + +AGL +  A+ + V +  +P + E RRV +   +G SL 
Sbjct: 132 KRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLAVGHSLD 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V  L  + 
Sbjct: 192 DALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQV 251

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +A  +  L      ++     G ++ +     G + + VAA     G
Sbjct: 252 KVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAG 300


>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 220

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 39  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 98

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 99  IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 158

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 159 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 209


>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 326

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V +    G+ 
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGVE 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S 
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++  LP  V + V  TSP Y   +  D  G  L+ +A A   IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIG 315


>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
          Length = 268

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ +
Sbjct: 88  QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 147

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S E
Sbjct: 148 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 207

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A
Sbjct: 208 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLA 250


>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
           MSMB43]
          Length = 221

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 40  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 99

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 100 IDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 159

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L  V  AF+L
Sbjct: 160 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 206


>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
 gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
          Length = 302

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K +  +F     + L +I R+V AGL V  A+  +       +  EF  + +   LGLSL
Sbjct: 118 KLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALGLSL 177

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++      +P     +FS  + +    GG L + L  LSR + D + M+ KV++L+ E
Sbjct: 178 RDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSLTSE 237

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            + +A  +  LP  +   + +  P   + LIN   G  +L    + +  G +++
Sbjct: 238 PRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLIL 291


>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
          Length = 258

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ +
Sbjct: 78  QKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVEI 137

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S E
Sbjct: 138 DRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAE 197

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            + SAW++G+LP  + + V  T+P Y + +  DP G  L  V  AF+L
Sbjct: 198 TRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQL--VYLAFIL 243


>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 330

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 149 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    QE     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 209 IDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  + + V  T+P Y+  +  DP G MLL +A    + G
Sbjct: 269 ETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAG 319


>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 256

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 75  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 134

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 135 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 194

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 195 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 245


>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
 gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
          Length = 535

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 96/182 (52%), Gaps = 1/182 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+L ++R  K  +   ++L ++  S++AG+ +  A  ++      P+  EF  VI+   
Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  +++  M   +  + +S+    I +Q Q+GGNL++    +   +R+   ++ K+Q
Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI-MVM 179
           A++ + +  + ++G +P+ + ++++   P  M        G ++L     ++L+G+ MV 
Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528

Query: 180 RL 181
           +L
Sbjct: 529 KL 530


>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
 gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 306

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 74/132 (56%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  S+RAGL +S  ++++  + + P   EF R+     LG+S   ++S M + +P +E 
Sbjct: 142 LLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGVSFDRALSDMEKRIPTREF 201

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F+  + +Q + GGNLS+ L  ++  L DR+ +  +++ ++ E +  + ++  +P  + 
Sbjct: 202 RIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMTAEQRYVSILVPIMPVALV 261

Query: 142 TLVYFTSPGYMN 153
            ++   + G+++
Sbjct: 262 LMMNTMNKGFID 273


>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 316

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 135 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 194

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 195 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 254

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 255 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 305


>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
          Length = 242

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 61  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 120

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 121 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 180

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L  V  AF+L
Sbjct: 181 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 227


>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 326

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S 
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIG 315


>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 264

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 83  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 142

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 143 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 202

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 203 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 253


>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 326

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 145 ISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGVD 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S 
Sbjct: 205 IDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSA 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG
Sbjct: 265 ETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIG 315


>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 317

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           + KR  + L   P+ LD +VR +  G     A  + V     P+    ++   +      
Sbjct: 136 LSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLRASPD 195

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  + R   L E    + V  + ++ GG   + L  +S  +RDR++ + ++ ALS 
Sbjct: 196 LGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELHALSA 255

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-MLLGVAAAFMLIGIMVMRL 181
           E + SAWI+  LP  V  L+   + GY   +  D  G  M+LG A    L    + RL
Sbjct: 256 EVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLYRL 313


>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
           10229]
 gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
 gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
          Length = 306

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 125 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 184

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 185 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 244

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 245 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 295


>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 299

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +  P  L ++   +RAG  +  AV  +V Q+  P+R EF RV     L +   +++  + 
Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWI 132
             + L E +       V  + GG+L   L ++SR ++ DR+ ++A ++A   E KASA +
Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRA-MEAACAEGKASARL 243

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + ++P  V  LV + +P Y    + DP G +LL  +   M +G +++R + +
Sbjct: 244 VTAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITD 295


>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
          Length = 261

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 80  MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 139

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 140 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 199

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L  V  AF+L
Sbjct: 200 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 246


>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 302

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 88/177 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG  +
Sbjct: 119 KQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGHGM 178

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++     +P +   +F+  + +    GG L E L +LSR L D + M+ KV++L+ E
Sbjct: 179 RYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLTSE 238

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            + +A  +  LP  +  +V + +P    +LI    G  +L   A  +++G + +++M
Sbjct: 239 PRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVM 295


>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 292

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 91/172 (52%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           + +   P+ ++ + R ++ GL ++ AV      ++ P++   +RVI  + +G+ L ++  
Sbjct: 117 QLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDAFE 176

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      +       ++ S+ ++ GG+++++L +L ++LR +   + ++++++ E + +A
Sbjct: 177 KESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRITA 236

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           W+IGS P  VS  +   +P  +  +     G   L +  +  L+GI+++  M
Sbjct: 237 WVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288


>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 335

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324


>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 335

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 154 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 214 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 273

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 274 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 324


>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 324

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +    +P+R     V      G+ 
Sbjct: 143 IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLRSGVE 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 203 IDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           E + SA+++  LP  + + V  T+P Y+  + NDP G  LL +A
Sbjct: 263 ETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLA 306


>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
 gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 336

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L  V  AF+L
Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQL--VYLAFIL 321


>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
 gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
          Length = 279

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K     F  D P  + +I  +  +G  ++  +     + S P+  E   +    +LG S 
Sbjct: 98  KTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLNLGESP 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
               +   +     E  F  T+I +  Q GG L E ++ LS+++   K  + K   ++ +
Sbjct: 158 EAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQ 217

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + S  II  +P   STL+YF  P  M  + N P G M+        +IGI ++R M+
Sbjct: 218 TRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIRTML 275


>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 302

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG  +
Sbjct: 119 KQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALGHGM 178

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++     +P +   +F+  + +    GG L E L +LSR L + + M+ KV++L+ E
Sbjct: 179 RYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSLTSE 238

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            + +A  +  LP  + TLV + +P    +LI    G  +L   A  +L+G + + LM
Sbjct: 239 PRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295


>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 329

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 148 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGVE 207

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 208 IDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 267

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G
Sbjct: 268 ETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAG 318


>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 292

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 2/181 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHLGL 63
           KK    F + +  AL  +  S+RAG+ +  AV  +         ++ EFR++     LG 
Sbjct: 106 KKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSDIQLGF 165

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+SE+   M   +P  +V    + I +QS +GG+ +E++  ++  +  R  ++ +++ L 
Sbjct: 166 SISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLF 225

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              K +   +  LP  +   +Y++SP Y   L +   G ++  +A   M+IG  + R  +
Sbjct: 226 ASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYIDRKFL 285

Query: 184 N 184
           N
Sbjct: 286 N 286


>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 327

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 146 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 205

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++A+S 
Sbjct: 206 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 265

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++  LP  + + V  T+P Y+  + ND  G  LL    AFML
Sbjct: 266 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 312


>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 257

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 76  IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLRTGVE 135

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 136 IDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSA 195

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  + + V  T+P Y+  + ND  G +LL  A    L G
Sbjct: 196 ETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAG 246


>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 322

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 2/169 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 141 IHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGVE 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++A+S 
Sbjct: 201 IDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMSS 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           E + SAW++  LP  + + V  T+P Y+  + ND  G  LL    AFML
Sbjct: 261 ETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLL--VLAFML 307


>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 304

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 89/178 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K++  ++   F+++FP+AL+I+  ++ +G  +  A   +  Q ++ V  EF+ + E   +
Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  + + R     P  E  FF + I +    GG L + +  ++R++ + ++++ K  +
Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           L+ E++ SA I+G LP     ++ F SP   + ++    G  +         IG  ++
Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFII 296


>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 404

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V      G+ + 
Sbjct: 224 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLRSGVEID 283

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ A+S E 
Sbjct: 284 RALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 343

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++
Sbjct: 344 RLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 396


>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 356

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V      G+ + 
Sbjct: 176 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLRSGVEID 235

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ A+S E 
Sbjct: 236 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELVAMSSET 295

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++
Sbjct: 296 RLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLL 348


>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 386

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V      G+ + 
Sbjct: 206 RRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRSGVEID 265

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S +      +E+     V+ +  + GG     L  +S  +RD ++ + ++ A+S E 
Sbjct: 266 RALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVAMSSET 325

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++
Sbjct: 326 RLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLL 378


>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
 gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 311

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 87/182 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   LG S+
Sbjct: 130 QKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLALGRSV 189

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  +   +P +E+    T + + +Q GG +  +L NL+  L +RK  + +V+ +  E
Sbjct: 190 DAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVRTMLSE 249

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             A+A  + +L      L+   + G +  +     G +L+ +A     +G +V+R +   
Sbjct: 250 VHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIRRLGKI 309

Query: 186 DV 187
           +V
Sbjct: 310 EV 311


>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 242

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 87/181 (48%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   LG S+ 
Sbjct: 62  KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+ +  E 
Sbjct: 122 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 181

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R +   D
Sbjct: 182 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 241

Query: 187 V 187
           V
Sbjct: 242 V 242


>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 342

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 84/181 (46%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V      G+ 
Sbjct: 160 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 219

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++S++ +   ++E+     V+ +  + GG     L  ++  +RD ++ + ++ A+S 
Sbjct: 220 IDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSS 279

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A    ++G  ++  + N
Sbjct: 280 ETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLYRLAN 339

Query: 185 F 185
            
Sbjct: 340 L 340


>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 306

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           M  L  +    F + FP+AL ++  +V AG  +  +  + VG++ D PV  EF+++ +  
Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSF-IFVGRTLDGPVGKEFKKMGDRL 178

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G S +   S+  +  P     FF   +      GG + E +A L+R++   + ++ K 
Sbjct: 179 QMGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKK 238

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            AL+ EA+ SA I+G+LPF    L+ + SP     ++  P G  +L        IG+ ++
Sbjct: 239 YALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLI 298

Query: 180 RLMIN 184
            L++ 
Sbjct: 299 WLLMK 303


>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 356

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V      G+ 
Sbjct: 174 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 233

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ A+S 
Sbjct: 234 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 293

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++  + N
Sbjct: 294 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 353

Query: 185 F 185
            
Sbjct: 354 L 354


>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
 gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
 gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 314

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 87/181 (48%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   LG S+ 
Sbjct: 134 KRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLALGRSID 193

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+ +  E 
Sbjct: 194 EALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEV 253

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R +   D
Sbjct: 254 NATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIRRLGRID 313

Query: 187 V 187
           V
Sbjct: 314 V 314


>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
 gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
          Length = 204

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V      G+ 
Sbjct: 23  IQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLRGGIE 82

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 83  IDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSS 142

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SA+++  LP  + + V  T+P Y+  +  DP G  LL +A    ++G
Sbjct: 143 ETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVG 193


>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
 gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
          Length = 359

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 83/181 (45%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V      G+ 
Sbjct: 177 VNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLRTGVE 236

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ A+S 
Sbjct: 237 IDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELVAMSA 296

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++  + N
Sbjct: 297 ETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLYRLAN 356

Query: 185 F 185
            
Sbjct: 357 L 357


>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 88/185 (47%), Gaps = 5/185 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++   R  + L   P  L+ + R+   G  V   + ++   +  P+  E +  +    
Sbjct: 97  LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + ++++ +     L  +  F   + V  Q GG+L   L  LS+ +RDR     +++
Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHMLLGVAAAFMLIG-IM 177
           A++  ++A+A ++  LP  V  L++FT   P Y + L+    G     +A    +IG I 
Sbjct: 217 AMTAASRATALLMVVLPPGV--LIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIW 274

Query: 178 VMRLM 182
           V+R++
Sbjct: 275 VLRIL 279


>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
 gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
          Length = 294

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  +  +S  +R+   +       +S SR
Sbjct: 123 FPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGEDPMAVFEDSYSR 182

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA+ SA 
Sbjct: 183 Y----PYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTSEARMSAM 238

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+  LP      + F  P     LINDP G  +L       L G+ ++  ++
Sbjct: 239 IVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLM 290


>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
 gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 313

 Score = 64.3 bits (155), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 88/182 (48%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR   F+   P+   ++  +  AGL +  A+A+   +   P   E  RV +   LG S+
Sbjct: 132 QKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLTLGRSV 191

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+ +  E
Sbjct: 192 DDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSE 251

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             A+A+ +  L      L+  ++ G +  +     G  L+ ++     +G  V+R +   
Sbjct: 252 VNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIRRLGKI 311

Query: 186 DV 187
           +V
Sbjct: 312 EV 313


>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 306

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 90/181 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R   F+   P    ++  +  AGL ++ A+A+   +   P   E  RV      G  L
Sbjct: 125 QRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMRFGEDL 184

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +I  +   +P +EV+  ++ + V ++ GG+L  AL +++  L +RK ++ +V+ +  +
Sbjct: 185 DTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVRTVLAQ 244

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + ++ +++  + F +  L+    PG +  +  D  G   L V ++  + G +++R M  F
Sbjct: 245 STSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIRRMTRF 304

Query: 186 D 186
           D
Sbjct: 305 D 305


>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 294

 Score = 63.9 bits (154), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 86/179 (48%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R        P  ++ I+RS++AG  +S AVA    +   PV    +RV     +G SL
Sbjct: 114 QRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMGASL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+++        +  +   +  + +  + GG+  + +  +  +LR R+  + +++A++ E
Sbjct: 174 SDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAMTGE 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA ++  LP  V       +P Y   ++    G  LLG A A+ ++GI ++  M+ 
Sbjct: 234 TRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRMVK 292


>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 307

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 73/169 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +  D  P  LD +VR +  G  ++ A       +S+P+R    +          L 
Sbjct: 128 RRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQELD 187

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++ + R    +E+   + V+ V  + GG     L  ++  +RD    + ++ A S E 
Sbjct: 188 AALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEI 247

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + SAW++  +P  ++  +  T+      + +DP G  +L  A    L G
Sbjct: 248 RLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAG 296


>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
 gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
          Length = 312

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 87/181 (48%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +RT +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   +G S+ 
Sbjct: 132 RRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLAVGHSIE 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +V  +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++    + 
Sbjct: 192 EALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +A+++ ++      LV    PG ++ +     G   + +A     +G +++R +   D
Sbjct: 252 TVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIRRLSKID 311

Query: 187 V 187
           V
Sbjct: 312 V 312


>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 295

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  +  +S  +R+   +       +S  R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA+ SA 
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+   P      + F  P   + LINDP G  +L       L G+ ++  ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291


>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 305

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 65/127 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  + R A     FP+ LD++  SV AGL    A+A +V +S  PV  EFRRV++   
Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  E++        + +V  F+  I    QLG N+ + L   S  +R ++  + + Q
Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267

Query: 121 ALSMEAK 127
           A+ +  K
Sbjct: 268 AMKVPVK 274


>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
 gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
          Length = 281

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
           P  +  ++    P  M  L      H L G AA  +++     GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
 gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
          Length = 281

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINFDV 187
           P  +  ++    P  M  L      H L G AA  +++     GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALW-----HTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  +  +S  +R+   +       +S  R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA+ SA 
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+   P      + F  P   + LINDP G  +L       L G+ ++  ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291


>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  +  +S  +R+   +       +S  R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA+ SA 
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+   P      + F  P   + LINDP G  +L       L G+ ++  ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291


>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 318

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
            ++  ++RAG+ +  A+  +  +  +P RSEFR+      LG +L  ++  M R +  ++
Sbjct: 154 QLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLALHDMRRRVCSRD 213

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +      I VQ Q GGNL   L  ++  L +R+ ++ ++ +L+ EA+ SA ++  LP   
Sbjct: 214 LDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSALVVMVLPIFF 273

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             ++  T  G    L     G +LLGV A
Sbjct: 274 LLMIRDTPLG--EALFQTVIGWVLLGVFA 300


>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
 gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           FP  + I+  +  +G  +  A+      + GQ  +  +S  +R+   +       +S  R
Sbjct: 124 FPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPVSVFEDSYDR 183

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA+ SA 
Sbjct: 184 Y----PYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAI 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+   P      + F  P   + LINDP G  +L       L G+ ++  ++
Sbjct: 240 IVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLM 291


>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 291

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  L+  +R +  G     A    + +S+ P+R+   RV   + LGL L E + R  +
Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L E++  +T + V  + GG+L + L +   +LR ++  + +++AL+ E + +A ++ 
Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +P  +   +  T+P +++ + +   G   L +A    L G  VM  M+ 
Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289


>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 305

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +K   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG 
Sbjct: 122 LQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL+
Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++
Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLII 297


>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
 gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
          Length = 284

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+    F  DFP AL +I  +  +G  ++  +     + S P+ +EF  +    ++G S 
Sbjct: 103 KRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLNVGESP 162

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                   +     E  F  T+  +  Q GG L E  + LS ++   K  + K   ++ +
Sbjct: 163 EAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAVMTAQ 222

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + S  II  +P   S L+YF  P  +  + + P G M+        ++GI+++R M+
Sbjct: 223 VRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIRKML 280


>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 295

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 40  IVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
           + GQ     +S  RR+   +       +S  R     P +E  FF T+I      GG + 
Sbjct: 152 LTGQLGQEFKSIHRRLSIGEDPATVFDDSYDRY----PYKEFYFFITIIRNNLNKGGQIR 207

Query: 100 EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           E ++ L R++ D   M+ K +A++ EA+ SA I+   P      + F  P   + L+NDP
Sbjct: 208 EVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACFPVGFFFFMQFAMPENFDFLVNDP 267

Query: 160 RGHMLLGVAAAFMLIGIMVMRLMI 183
            G  +L       L G+ ++  ++
Sbjct: 268 TGRYVLYYVFGSELFGMGIIWWLM 291


>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 308

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           LI  RT K     L   P  LD +VR +  G  V  A       +  P+R+    + + Q
Sbjct: 122 LIWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQ 181

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++
Sbjct: 182 RAGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQREL 241

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMV 178
            ALS E + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +M+
Sbjct: 242 FALSAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVML 301

Query: 179 MRL 181
            RL
Sbjct: 302 ARL 304


>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 187

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+  + F  DFP  L +I  +  +G  ++  +     + S P+  E   +    +LG S 
Sbjct: 6   KRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLNLGESP 65

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                   +     E  F  T+I +  Q GG L E  + LS+++   K  + K   L+ +
Sbjct: 66  ETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKSVLTAQ 125

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + S  II ++P   S L+YF     +  + ++P G M+         IGI V+R M+
Sbjct: 126 TRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIRKML 183


>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 305

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 85/176 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG 
Sbjct: 122 LQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLGE 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL+
Sbjct: 182 SPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALT 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++
Sbjct: 242 SEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLII 297


>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
 gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 308

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L 
Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E 
Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248

Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
           + SAWI+  LP  ++  ++ F +  +M  + +DP G  LL
Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 287


>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 293

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L +KR  +F   +FP +L +I  +  +G  ++  +     + S P+  EF  V    ++G
Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S         R     E  F  T+I +  Q GG L E  + LS ++   K  + K   +
Sbjct: 169 ESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R M
Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288

Query: 183 I 183
           +
Sbjct: 289 L 289


>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 322

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 261

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 80  IHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGVE 139

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 140 IDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMSS 199

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           E + SAW++  LP  +   V  T+P Y++ + ND  G   L +A    + G
Sbjct: 200 ETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAG 250


>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 314

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  +  AGL +  A+ +   +   P   E   V     +G+ +
Sbjct: 133 QKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLAVGVPM 192

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  M + +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 193 EDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   + +A A   +G +++R M   
Sbjct: 253 VNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIRRMSRI 312

Query: 186 DV 187
           DV
Sbjct: 313 DV 314


>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
 gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
          Length = 322

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
          Length = 313

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  AV +   +   P   E  +V     LG S+
Sbjct: 132 QKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLALGASM 191

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 192 DDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 251

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   + VA A   +G +++R +   
Sbjct: 252 VNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIRRLSRI 311

Query: 186 DV 187
           DV
Sbjct: 312 DV 313


>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
 gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
          Length = 308

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G  L
Sbjct: 128 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 188 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +M+ RL
Sbjct: 248 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 304


>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 311

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 85/181 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT  F+   P    ++  +  AGL +  ++A+   +   P   E R V +   +G +L 
Sbjct: 131 KRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLGVGRTLD 190

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P +E+    + + + ++ GG +  +L NL+  L +RK  + +V+    + 
Sbjct: 191 DALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVRTQLSQI 250

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            A+A+ + ++      LV    PG ++ +     G + + V+     +G + +R +   D
Sbjct: 251 NATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIRRVSKID 310

Query: 187 V 187
           +
Sbjct: 311 I 311


>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
 gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
          Length = 321

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 92/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H I++R     +  P+A+  I   + AGL      + +  +S  P++  F RV +    G
Sbjct: 136 HAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAAG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L E+++ +     ++E++F +T + +Q Q GG++ + L     +L    N++  +   
Sbjct: 196 SPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVN 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A+ SA ++ ++   ++ ++   S G++    +   G ++L VA +  + GIM +R +
Sbjct: 256 TAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRKI 315

Query: 183 IN 184
           ++
Sbjct: 316 LS 317


>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 319

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G  L
Sbjct: 139 RRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 198

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 199 DAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +M+ RL
Sbjct: 259 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARL 315


>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
 gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
          Length = 306

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 3   HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           HL +K    + +   P  LD +VR +  G  V+ A    +G    P+    +R       
Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ A
Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241

Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
           LS E + SAWI+  LP  ++  ++ F +  +M  + +DP G  LL
Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285


>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 314

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT +F++  P    I+  + +AGL +  ++++   +  DP   E  RV     +G  L 
Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLAVGEPLE 193

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+    + 
Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +A+ +         L+    PG ++ +     G + + V+     IG +V+R     D
Sbjct: 254 TVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIRRFSRID 313

Query: 187 V 187
           V
Sbjct: 314 V 314


>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
 gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
          Length = 306

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 3   HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           HL +K    + +   P  LD +VR +  G  V+ A    +G    P+    +R       
Sbjct: 122 HLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRS 181

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ A
Sbjct: 182 GKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTA 241

Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLL 165
           LS E + SAWI+  LP  ++  ++ F +  +M  + +DP G  LL
Sbjct: 242 LSAEVRLSAWILALLPIGLALFIIIFNNQLFMG-MWHDPMGFRLL 285


>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
 gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
          Length = 318

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 1/177 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G  L
Sbjct: 138 RRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGKDL 197

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS E
Sbjct: 198 DAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALSAE 257

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
            + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +M+ RL
Sbjct: 258 TRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARL 314


>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
          Length = 194

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 3   HLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           H+++ RT +        P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  
Sbjct: 69  HVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           + G++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  + 
Sbjct: 129 NYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIG 175


>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 316

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 84/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   +G S+
Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   +  A A   +G +++R +   
Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314

Query: 186 DV 187
           DV
Sbjct: 315 DV 316


>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
 gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
          Length = 272

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KK  + F  DFP  L +I  +  +G  ++  +     + + P+ SE R +    +LG S 
Sbjct: 91  KKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLNLGESP 150

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                   +     E  F  T+I +  Q GG L +    LS+I+   K  + K   ++ E
Sbjct: 151 ESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAE 210

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            + S  II  +P   S L+YF     +  + N P G +
Sbjct: 211 TRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKL 248


>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 223

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L +KR  +F   +FP +L +I  +  +G  ++  +     + S P+  EF  V    ++G
Sbjct: 39  LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 98

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   +
Sbjct: 99  ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 158

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R M
Sbjct: 159 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 218

Query: 183 I 183
           +
Sbjct: 219 L 219


>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 316

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 84/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   +G S+
Sbjct: 135 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLAIGASM 194

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 195 DDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQ 254

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   +  A A   +G +++R +   
Sbjct: 255 VTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIRRLSRI 314

Query: 186 DV 187
           DV
Sbjct: 315 DV 316


>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
          Length = 293

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L +KR  +F   +FP +L +I  +  +G  ++  +     + S P+  EF  V    ++G
Sbjct: 109 LSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNVG 168

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   +
Sbjct: 169 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 228

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R M
Sbjct: 229 TAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRKM 288

Query: 183 I 183
           +
Sbjct: 289 L 289


>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 85/174 (48%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R    +   P  +D ++R+V AG  +  A+      S  P+     +V     LG  +
Sbjct: 125 QRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIKLGGEI 184

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++S  +R   L+E+   +  I V  + G ++ E L +L  +++  +  + + +AL+ E
Sbjct: 185 DTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFRALTGE 244

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++ +AW++G +P  +   +  T+P Y   L +DP G  +L +A      G++ +
Sbjct: 245 SRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLAL 298


>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 312

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 86/182 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +F++  P    I+  + +AGL +  A+++   +   P   E  +V     +G S+
Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLAVGHSV 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+    +
Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVRTQLSQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +A+++  +      L+   SPG ++ +     G   +  A A   IG  ++R M   
Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIRRMSKI 310

Query: 186 DV 187
           DV
Sbjct: 311 DV 312


>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 286

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 5/181 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR A+F + +P+ +D I  +VRAGL +S+A+A +  +   P+R  FRR      
Sbjct: 95  LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154

Query: 61  LGLSLSESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                +ES+ R+   +  P+ +    +  I+ +   GG+L   L +LS  LRD    +++
Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVG-GGDLGRLLRSLSSFLRDDARTRSE 213

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +++    +   A +  + P+ V  L+ F   G +    N P G +++G+ AA  ++   V
Sbjct: 214 LESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRV 271

Query: 179 M 179
           M
Sbjct: 272 M 272


>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT +F++  P    I+  + +AGL +  ++++   +  +P   E  RV     +G  L 
Sbjct: 134 KRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLAVGEPLE 193

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+    + 
Sbjct: 194 DALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQV 253

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +A+ +         L+    PG ++ +     G   + VA     IG +V+R +   D
Sbjct: 254 TVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIRRLSRID 313

Query: 187 V 187
           V
Sbjct: 314 V 314


>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
 gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
          Length = 293

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K     F  DFP  L +I  +  +G  ++  +     +   P+  E   +    ++G S 
Sbjct: 112 KNNHTIFKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESP 171

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                   +     E  F  T+I +  Q GG L E  + LS+++   K  + K   ++ +
Sbjct: 172 ETVFYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQ 231

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + S  I+  +PF  S  +YF  P  +  + N P G ++     +  +IGI ++R M+
Sbjct: 232 TRMSVNILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSML 289


>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
 gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 15/186 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54
           K LI++R  K    F +AL+ +  +V+AG  V +AVA        +  + +D V+ EF  
Sbjct: 56  KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVK-EFH- 113

Query: 55  VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            IETQ  + + + E +  +     +++V  F+ V     + GG+++  +   +R+L D+ 
Sbjct: 114 YIETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKI 173

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +++ +++      KA   I+  +P  +   +  TSPG+++VL  +     L G+ A  + 
Sbjct: 174 DVRKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGN-----LFGMCAMTLC 228

Query: 174 IGIMVM 179
           +GI V+
Sbjct: 229 LGIYVL 234


>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 312

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 87/182 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF+   P    I+  + +AGL +  A+ +   +   P   E  +V +   +G S+
Sbjct: 131 QKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLAVGHSI 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+    +
Sbjct: 191 DDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +A+++  +      L+   + G ++ + +   G   + VA A   +G  ++R M   
Sbjct: 251 VTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIRRMSKI 310

Query: 186 DV 187
           DV
Sbjct: 311 DV 312


>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 280

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L +KR  +F   +FP +L +I  +  +G  ++  +     + S P+  EF  V    ++G
Sbjct: 96  LSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNVG 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   +
Sbjct: 156 ESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVM 215

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + S  II  +P   S L+YF  P  +  + + P G ++        LIG++V+R M
Sbjct: 216 TAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRKM 275

Query: 183 I 183
           +
Sbjct: 276 L 276


>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
 gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
          Length = 332

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +   +  +  P+AL  +    +AGL +    A    ++  P+   F +V     LG
Sbjct: 147 HAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIELG 206

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAK 118
            S+ E++ R      L E++F +  + VQ   GG+ +  L    RI +D  +    ++  
Sbjct: 207 HSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVL----RIAQDSVDHALELRRT 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  + +AK SA I+ ++P  +  ++   SP + N       G  LL +AA+ +  GI++
Sbjct: 263 LRVQTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILI 322

Query: 179 MRLMINFDV 187
           +R M+  D+
Sbjct: 323 VRRMLAVDL 331


>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 313

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 1/176 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+A  L   P  LD +VR+ R G  +  A+      +  PVR  F +++  Q  G  + 
Sbjct: 135 RRSAAILA-LPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQSGTPID 193

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + +   +QE++  +TV+ +  + GG     L  ++  LR R   +A+  ALS E 
Sbjct: 194 QAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAET 253

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +  A I+  +   ++  +   +  Y+  +     G MLL      ++ G++++  M
Sbjct: 254 RLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLNRM 309


>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 312

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 84/181 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   +G S+ 
Sbjct: 132 RRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLAIGHSIE 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ES+  +   +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++    + 
Sbjct: 192 ESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQV 251

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +A+++  +      LV    PG ++ +     G   + VA     +G +++R +   D
Sbjct: 252 TVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIRRLSKID 311

Query: 187 V 187
           V
Sbjct: 312 V 312


>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
 gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
          Length = 300

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 3   HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +L  K+ A+  F   F  AL+II  +V AG  +   +     + S  V  EF  + +   
Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +          +  +E  FF   + +  + GG + E +++L++++ + + M  +  
Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E +AS  I+  +P      + F SP   +VL++DP G MLL    A  L+G+  + 
Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294

Query: 181 LMIN 184
            MIN
Sbjct: 295 TMIN 298


>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 314

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 84/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +F++  P    I+  + +AGL +  AV +   +   P   E  +V     +G S+
Sbjct: 133 QKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLAVGASM 192

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G ++ +   P G   + +A     +G +++R +   
Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIRRLSRI 312

Query: 186 DV 187
           DV
Sbjct: 313 DV 314


>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
          Length = 305

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I KR     +     LD +     AG  +  A+   + +S DP++S   +V     
Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
              SLSE+   + + +P+ E    S  ISV S++          N+S  +++  ++   +
Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A + E+K +++IIG +P  +  ++    P Y+   +  P G +   +A    L G+ ++
Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291

Query: 180 RLMIN 184
           R + N
Sbjct: 292 RRISN 296


>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
 gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
          Length = 245

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRVI 56
            L KKR  +   +F   + ++   + AG  V +A +      VI+      V  EF  ++
Sbjct: 55  ELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHIV 114

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               +  S+ +++S       L +V  F+ V +   + GG L   +++ + ++RD+  ++
Sbjct: 115 SQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVR 174

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  ++   +    I+  +PF +   +  TSPG+ N++ N   G +L+ +  A  +  I
Sbjct: 175 QEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGAI 234

Query: 177 MVMRLMINFDV 187
            + R ++  ++
Sbjct: 235 AIARHIMKIEI 245


>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
           [Rhodopirellula baltica SH 1]
 gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
           TadB [Rhodopirellula baltica SH 1]
          Length = 297

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 68/136 (50%)

Query: 44  SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
           ++ P+R +    +    LG S S     + R MP+  +  FST +SV  + GG+L+  LA
Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           +++R+ RDR+ +  ++++   +++ S   +  L + V+ +++   P +M    +   G  
Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSA 273

Query: 164 LLGVAAAFMLIGIMVM 179
            +        +GI+ M
Sbjct: 274 AIAATIVLQAVGIIWM 289


>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
          Length = 301

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+ 
Sbjct: 155 MQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLRSGVE 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S 
Sbjct: 215 IDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSA 274

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGY 151
           E + SAW++G+LP  + + V  T+P Y
Sbjct: 275 ETRLSAWVLGALPVGIGSFVIATNPKY 301


>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 315

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 84/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+++   +   P   E  +V +   +G SL
Sbjct: 134 QKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLAVGTSL 193

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+    +
Sbjct: 194 DDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQ 253

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +A+ +  +      L+    PG ++ +     G   +  A    ++G + +R     
Sbjct: 254 VSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIRRFSKI 313

Query: 186 DV 187
           DV
Sbjct: 314 DV 315


>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 83/182 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     +G S+
Sbjct: 133 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 192

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   + +A     +G +++R +   
Sbjct: 253 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 312

Query: 186 DV 187
           DV
Sbjct: 313 DV 314


>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 312

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 83/182 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     +G S+
Sbjct: 131 QKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLAVGASM 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 191 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G +  +   P G   + +A     +G +++R +   
Sbjct: 251 VSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIRRLSRI 310

Query: 186 DV 187
           DV
Sbjct: 311 DV 312


>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
 gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
          Length = 305

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 2/174 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  + +   P+ +D +VR +  G  V+ A    +    DP+    +R       G  L 
Sbjct: 126 ERRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLD 185

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ ++ R   LQE+   S+VIS+  + GG     L  ++  +RD +  + ++ ALS E 
Sbjct: 186 SALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEV 245

Query: 127 KASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           + S WI+  LP  +   ++ F +  +M  +  DP G  +L   A   ++G  ++
Sbjct: 246 RMSVWILSLLPIGLGLFIIVFNNDLFMG-MWRDPLGFKMLIGGAMLQVVGTYLL 298


>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
 gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
          Length = 181

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 74/174 (42%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A F  DFP  + +I  +  +G  ++  +     + + P+  E   +    +LG S     
Sbjct: 4   AIFHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVF 63

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
               +     E  F  T+I +  Q GG L E    LS ++   K  + K   ++ + + S
Sbjct: 64  YDAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMS 123

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             II  +P   S L+YF  P  +  + N   G ++     A  LIG+ ++R M+
Sbjct: 124 VNIISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKML 177


>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
          Length = 315

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 85/159 (53%), Gaps = 1/159 (0%)

Query: 29  AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           AGL +   + ++V +   PV+ E  RV+    LG  L  +++ ++  +  Q++  F   +
Sbjct: 158 AGLSIPQGLRLVVQEMPAPVKIELGRVVREIELGRDLEGALNDLLERIHTQDMKVFINAL 217

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +Q + GG+L++ ++ ++  + +RK +   ++A++ +A+ SA+ +  +   ++ ++    
Sbjct: 218 IIQRRAGGDLAKVMSQMAATMEERKIIHQTIKAVTSQARTSAYALPIISLLIAFMLSKMI 277

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            G+ ++    P G ++L +     ++G++++R   N  V
Sbjct: 278 DGFYDLFTTLP-GMIVLALFVGLQVLGVVLVRKFSNIRV 315


>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 312

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 86/182 (47%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +F++  P    I+  + +AGL +  A+ +   +   P   E  +V     +G S+
Sbjct: 131 QKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLAVGHSI 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+    +
Sbjct: 191 DDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +A+++  L      L+   + G ++ + +   G   + VA     IG  ++R M   
Sbjct: 251 VTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIRRMSKI 310

Query: 186 DV 187
           DV
Sbjct: 311 DV 312


>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 269

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRV 55
           K LI ++  + L +F  A+ I+   + AG  + ++V   + +        + +  EF  +
Sbjct: 78  KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +A+   ++ D+  +
Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++  LP  +   + F+SPG+ N++     G M + V     L  
Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 258 IYISKRLLNIEV 269


>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
 gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
 gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
          Length = 295

 Score = 57.4 bits (137), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 6   KKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIETQH 60
           ++R  K  D+ FP  + I+  +  +G+ +  A+         P+  EF    +R+   + 
Sbjct: 113 QRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLARGED 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +S SR     P +   FF  +I      GG + E ++ L R + D   M+ K +
Sbjct: 173 AMAVFQDSYSRY----PYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S  I+   P      + F +P   + ++NDP G ++L       L+GI  + 
Sbjct: 229 AMTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVW 288

Query: 181 LMI 183
            ++
Sbjct: 289 WLM 291


>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 247

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 10/194 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRR 54
           K LI++R       F +AL+ +  +V+AG  V +AV         +  Q +D VR EF  
Sbjct: 56  KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVR-EFH- 113

Query: 55  VIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            +ETQ  + + + E +        ++++  F+ V     + GG+++  +   SR+L D+ 
Sbjct: 114 YMETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKI 173

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +++ +++      KA   I+  +P  +   +  TSPG++ VL  +P G + + +      
Sbjct: 174 DVRREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYG 233

Query: 174 IGIMVMRLMINFDV 187
           +   + R +++ +V
Sbjct: 234 LSYWLGRRIVDIEV 247


>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 313

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 2/170 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT  F+   P    ++  + +AGL +  A+A+   +  DP   E   V +   +G SL 
Sbjct: 133 KRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLAVGQSLD 192

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V     + 
Sbjct: 193 DALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVTTTLSQI 252

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           K +A  +  L      ++   +PG ++ +     G       AAF L G+
Sbjct: 253 KVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQG--ATLAAFGLYGL 300


>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 306

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 62/123 (50%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K L+  P+ LD++  SV AGL    A+A ++ +   P+  EF  V++   +G  
Sbjct: 153 IAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMKVGKQ 212

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +++  M   + L +++ F   I    QLG ++   L   S  +R+++  +AK +A+  
Sbjct: 213 KRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKA 272

Query: 125 EAK 127
             K
Sbjct: 273 PVK 275


>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 282

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 82/166 (49%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  L  +  ++RAG  +  A+  +   +  P+  E   ++  Q LG+S  +++ R+  
Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L  V   +    V    GGNL++ L  +++ LR +   + +++AL+ + +  AW++ 
Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LP  ++ ++Y   P  M  L     G +L+ +  A  ++G  ++R
Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIR 275


>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 297

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 67/136 (49%)

Query: 44  SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
           ++ P+R +    +    LG S S     + R MP+  +  FST +SV  + GG+L+  LA
Sbjct: 154 TASPLRDQIHWCVRRIQLGDSGSSVFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLA 213

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           +++R+ RDR+ +  ++++   +++ S   +  L + V+ +++   P  M    +   G  
Sbjct: 214 SVARVARDRQEVARRIRSNIAQSQFSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSA 273

Query: 164 LLGVAAAFMLIGIMVM 179
            +        +GI+ M
Sbjct: 274 AIAATIVLQAVGIVWM 289


>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 291

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
           L   + AKF   F   ++ +   +  GL +  ++     + +DP ++ +   +++   +G
Sbjct: 108 LAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQ-FADEHADPYIKKQSSLLLQRMSMG 166

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAK 118
                S + ++     + V  F+  I   +Q   +L++ L ++  ++     DR+ +KAK
Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       K +A   G LP+ +  L  +T P +   L+NDP G   + VA    L G + 
Sbjct: 227 LSG----TKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLW 282

Query: 179 MRL 181
           +RL
Sbjct: 283 LRL 285


>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 314

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 85/182 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   +G S+
Sbjct: 133 QKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLAVGASM 192

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+    +
Sbjct: 193 DDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQ 252

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
              +++ +  L      L+     G ++ +     G   + +A +   +G +++R +   
Sbjct: 253 VTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIRRLSRI 312

Query: 186 DV 187
           DV
Sbjct: 313 DV 314


>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
           [Achromobacter xylosoxidans A8]
 gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
           [Achromobacter xylosoxidans A8]
          Length = 307

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  + +   P  LD IVR +  G  +  A       + +P+R     V+ET     SLS
Sbjct: 129 KRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLRE----VVETAS---SLS 181

Query: 67  ES------ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S      ++++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ 
Sbjct: 182 RSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELT 241

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A S E + SAWI+  LP  ++  +   +      L  DP+G  +L  A    + G
Sbjct: 242 ASSAEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGG 296


>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
 gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
          Length = 307

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  +     P  LD++  SV+AGL    A++ I  +   P   E RR+ +   +G+ 
Sbjct: 156 IQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIRMGVV 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              ++  M     L++VS F T I    +LG ++ + L N +  +R+R+    K QA+  
Sbjct: 216 RRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKA 275

Query: 125 EAK 127
             K
Sbjct: 276 PVK 278


>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
          Length = 260

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIETQHLGLSLSESI 69
           F +AL  +  +V+AG    +AV   V       +    +  EFR +     L + + E  
Sbjct: 83  FRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYIESQLRLSVPVEELF 142

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +   ++++  F+ V     + GG++++ +  ++R+L D+  +K +++A     K+ 
Sbjct: 143 LDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEVKKEIEATLAAKKSE 202

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             ++  +P  +   +  TSPG+++VL  +P G
Sbjct: 203 QMVMSIMPAGIICYLKLTSPGFLDVLYGNPFG 234


>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 289

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    K +  F D F  +L +I R++ +G  ++ ++      +   +R EF R+I+  +
Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L E+++      P +  + FS  + +  + GG++ ++L  L++ L   + ++ K  
Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +L+ E++ +A I+  LPF +  ++   +      L  +  G  ++      + IG ++++
Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281

Query: 181 LMIN 184
            MI+
Sbjct: 282 RMID 285


>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 311

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR    +   P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    LG  
Sbjct: 155 IKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTRLGRP 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +++  M+    + +V  F   +    QLG ++   L   S  +R R+  +A+ +A
Sbjct: 215 RRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271


>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
 gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
          Length = 247

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  +       A   +  S+ +GL ++ A+  +   + +PVR+EF R       G  +
Sbjct: 67  RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++  +V  +    + F +  + V  + G  LS+ L   +R++R+R  ++ K+   + +
Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            + SA ++  +P  +   +   S  +   +   P       +A A +L GI
Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVPGAA---SIAVALLLDGI 234


>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 311

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   LG +
Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIRLGRT 210

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             E++  M     +++V  F + +    QLG ++S+ L   S  LR R+  +A+  A
Sbjct: 211 RREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAA 267


>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 311

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   LG +
Sbjct: 151 IKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIRLGRT 210

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++  +V    +++V  F + +    QLG ++S+ L   S  LR R+  +A+      
Sbjct: 211 RREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAE------ 264

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGV 167
           EA   A +   +P     +V+   P    V++    PR    LGV
Sbjct: 265 EAAQKAPVKMLIP-----MVFLIFPALFVVILGPAVPRIMQALGV 304


>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 307

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  + +   P  LD IVR +  G  +  A       + +P+R               L 
Sbjct: 128 KRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAKELD 187

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ ++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ A S E 
Sbjct: 188 AALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEV 247

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           + SAWI+  LP  ++  +   +      L  DP G  +L
Sbjct: 248 RLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKML 286


>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 308

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++ AKF    P    I+  S  AGL +  A+ V   +  DP   EF  +     +G 
Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ RM   +  +++    + + +  + GG+L  +L N+S  L  RK  K +V+ L 
Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            ++  + +++ +       L+   + G +  L +   G + + +A     IG++ +  ++
Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304

Query: 184 N 184
            
Sbjct: 305 K 305


>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
          Length = 318

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 278 EEIAAKIPTK 287


>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 298

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIETQHLGL 63
           K R    + D P  LD IV +V AGL ++  +  A + G    P+  EFRR++     GL
Sbjct: 145 KHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKG-PLAQEFRRLLRDMRSGL 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + +E++ RM   M + ++S F+  +    ++G +L  +L   +   R+ + ++A+  AL 
Sbjct: 204 ARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEKLALE 263

Query: 124 MEAK 127
              K
Sbjct: 264 APVK 267


>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
 gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
          Length = 318

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 278 EEIAAKIPTK 287


>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 314

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           + HL+KKR ++     P+ALD++V    +GL  + A   VA  V  S      E   V  
Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G+ +S++ + ++    L E++   T+++  S++GG+L++ L   +   RD++N + 
Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 274 EEIAAKIPTK 283


>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum SS9]
          Length = 322

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62
           KKR     + FP+ALD++V +  AGL    A   VA  +   S  + SE + V     LG
Sbjct: 166 KKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLG 225

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++S+ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA+ +A 
Sbjct: 226 VPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 284

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
              AK    +I  L  C+        PG+  V I    G  ++ V  AF
Sbjct: 285 ---AKIGTKMIFPLVTCI-------WPGFFTVAI----GPAIIAVLEAF 319


>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 296

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
           K R    + D P  LD I  SV AGL V+  +   V +  +  +  EF R++     GL 
Sbjct: 143 KLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDIRAGLP 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++ RM   M + +++ F++ +    ++G NLS+ L   +   R+ + ++A+  AL  
Sbjct: 203 RAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEA 262

Query: 125 EAK 127
             K
Sbjct: 263 PVK 265


>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
           C54]
          Length = 303

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  LD IVR V  G  ++ A       + +P+R               L  ++ ++ R
Sbjct: 138 QLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQVSR 197

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              ++E+   + V+SV  + GG   + L  ++  +RD    +A++ A S E + SAWI+ 
Sbjct: 198 QYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWILA 257

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            LP  ++  +   +      L  DP G  +L  A    + G  ++
Sbjct: 258 LLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYIL 302


>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           K+R  + L D P  LD I   V  GL ++ A+ + V +  + P+R+EFR ++     G+ 
Sbjct: 184 KRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGMP 243

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E   R    + +QE+    T I    + GG+L+  L   +   R+ + ++A+  AL  
Sbjct: 244 RVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALEA 303

Query: 125 EAK 127
             K
Sbjct: 304 PVK 306


>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 274

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 10/189 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--------VIVGQSSDPVRSEFRRV 55
           L++KR  +    F  AL  +  S+ AG  V +A          +  G ++D VR EF  +
Sbjct: 84  LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVR-EFAMI 142

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G +L   +S+      L+E++ F  V S   + GG+L + +   S+++ ++ ++
Sbjct: 143 RHRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDI 202

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLI 174
           + ++  +  + +  + I+ ++PF     +   +P Y   L + P G++ L  +   F+  
Sbjct: 203 QQEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGC 262

Query: 175 GIMVMRLMI 183
           G ++ +LM+
Sbjct: 263 GALIRKLMM 271


>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 306

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K     P+ LD++  SV AGL    A+  +V + + P+  EF R+++   +G  
Sbjct: 152 ISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIRMGKP 211

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +++  +     +++++ F T I    +LG ++ + L   S+ +R ++  +A+ QA+  
Sbjct: 212 RRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKA 271

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             K            +  LV+F  P    +L+ 
Sbjct: 272 PIK-----------MLLPLVFFIFPTLFIILLG 293


>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
          Length = 217

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 31  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 91  LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210

Query: 181 LMI 183
            M+
Sbjct: 211 KML 213


>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
 gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +++KKR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 274 EEIAAKIPTK 283


>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 306

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            AL  I  SVR+ L +  A+        DP+R E  RV+     G +L+ +  RM R   
Sbjct: 134 RALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTD 193

Query: 78  LQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +V   +  + +Q + GG ++  L    A+ +  LR  + +K ++    +    + W +
Sbjct: 194 SPDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRL----AKWFV 249

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
                 +  +++ T+  +       P G ++LGVA      G+   + +   D
Sbjct: 250 ALAMPAIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302


>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 297

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR     D  P+ LD++  +V AGL    A+A +  ++  P+  E   V+   ++G ++
Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ S + +    + +  F T +    +LG  L++ LA ++  +R     +A+ +A    
Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKA---- 259

Query: 126 AKASAWIIG 134
           AKAS  I G
Sbjct: 260 AKASPKIAG 268


>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
 gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
          Length = 270

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 84  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263

Query: 181 LMI 183
            M+
Sbjct: 264 KML 266


>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 270

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIE 57
           ++  + +R A+ L D    AL  +  S++AG  +  A+     + S   P      R IE
Sbjct: 77  VRDTLARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIE 136

Query: 58  TQ----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                  LG  + E++  +   +PL+E++     +    + GGN+ E + N+++++ DR 
Sbjct: 137 LTAREVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRL 196

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++ ++Q L+ + +  A I+  +P  +  +V  T+P Y+ V      G   LG+
Sbjct: 197 AVEREIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGL 250


>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
          Length = 296

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/178 (17%), Positives = 79/178 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++   F + FP  L I+  +  +G  ++  +     +    + +EF  +    +LG + 
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
               +   R     E  FF++VI +  + GG LS+ +  + + + +   +K +   ++ +
Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +  ++  +P   +  +Y+  P  +  L +   G  ++       ++GI ++R MI
Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292


>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
 gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
          Length = 247

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSE 51
           K +I+KR  +    F + L  +  S+ AG P+  A    VG  SD           +  E
Sbjct: 55  KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKA---FVGALSDLYVLYPSDDAYIVRE 111

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
            + +I    L +S+ E++S       + ++  FS VI +  + GGNL +A+ N SRI+ +
Sbjct: 112 TKIIINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISE 171

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  M  +++ L    K    ++  +P  +  ++  T+  Y+N +     G     +AA  
Sbjct: 172 KIEMAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGR----IAATL 227

Query: 172 MLI 174
            LI
Sbjct: 228 CLI 230


>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 317

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60
           I  R  K ++ FP+ALD++V  V AG+ +  A+   VG+    S  P+  EFR +     
Sbjct: 160 IGARKEKIMEGFPDALDLMVICVEAGMGLDQAINR-VGEEMKLSCPPISDEFRTLNMEMR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++  M     L +V+   T++    Q G ++ +AL   S  +R ++  +A+ +
Sbjct: 219 MGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEK 278

Query: 121 A 121
           A
Sbjct: 279 A 279


>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 307

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +     P+ LD++V SV AGL    A+  +   +S P+  E  RV++   +G S +
Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + ++EV  F   +   S+LG ++   L   +R  R ++  +A+     M  
Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAE----EMAQ 270

Query: 127 KASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           K    ++  +  C+  + ++    PG ++++
Sbjct: 271 KVPVKVMFPVVLCILPALIITVVGPGVLSIM 301


>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
 gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
 gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
 gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
 gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
 gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
           FV-1]
 gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
 gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
           Angola]
 gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
 gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
 gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 291

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 300

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++   F + FP  L I      +G+ V++    I+ ++   ++    +  +     LS+
Sbjct: 119 KQKKIYFTETFPELLLIFNMGSVSGISVNE----ILKKAGQEIKGGLGKECDLIFRRLSI 174

Query: 66  SESISRMVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            E+I+  V Y   Q  S+     F  ++ +    GG L E +  L++++ +   M+ +  
Sbjct: 175 GENINT-VFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKM 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + S W++  +P       YF +P     + +   G +++    A   +GI +MR
Sbjct: 234 AMTGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMR 293

Query: 181 LM 182
            M
Sbjct: 294 YM 295


>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 317

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  LD++  SV AGL    ++  +  + + P+  E +RV +   +G S  E++  +   +
Sbjct: 174 PEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEISMGKSRKEALIDLKERI 233

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            LQ++S F   I    QLG  +S  L   S+  R ++  +A+ QA+    K
Sbjct: 234 DLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVK 284


>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 291

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 78/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  + + P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 291

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 76/183 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI ++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 283

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 78/162 (48%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           S+++G+ +  A + +V     P+  EF  + E    G  +  ++      + +  +S   
Sbjct: 122 SIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADERLQVPRLSLIF 181

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             I +  + GG L+  +  L+   R+ + ++ +V+  +   + SA I+  +PF +  L+Y
Sbjct: 182 QTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMFLMPFFICGLLY 241

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              P  + +L ++  G+++L +A A  +    +M+ +I  D+
Sbjct: 242 LIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283


>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
 gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 268

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62
           +KR     +  P  +D ++R + AG  +  A+   +  +     P+    R  +E+    
Sbjct: 85  QKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVESGRDY 144

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +  S++ R  PL   +F +  +   S  G  +   L  +SR LR ++ M+ +  A 
Sbjct: 145 TGLIDDFSKLYRIPPL---TFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAA 201

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A     LP  +   +   +  + +VL++   G  +L  +   +++G +++  M
Sbjct: 202 TAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFRM 261

Query: 183 IN 184
           + 
Sbjct: 262 VQ 263


>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 329

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 290 EEIAAKIPTK 299


>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
 gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
          Length = 323

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62
           K R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V      G
Sbjct: 163 KDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFAKIQAG 222

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +++ +++S++V    L E+    +++S  S++GG+L++ L + +   RD++   A+  A 
Sbjct: 223 VTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIAA 282

Query: 123 SMEAK 127
            +  K
Sbjct: 283 KIPTK 287


>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
 gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
          Length = 314

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 275 EEIAAKIPTK 284


>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
 gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
          Length = 314

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
           I++R     + FP++LD+I+  V AGL +  AV  +V +  ++ P  +E   ++  +   
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
               AK S  I+  L FC+  S  V    P  + V+
Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
 gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
          Length = 313

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
           ++ KR +K     P+ALD++V    +GL  + A+  +  +   S      E   V    +
Sbjct: 156 MVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVN 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +S++ + +++   L+E++   T+++  S++GG+LS+ L   +   RD++N + +  
Sbjct: 216 AGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEV 275

Query: 121 ALSMEAK 127
           A  +  K
Sbjct: 276 AAKIPTK 282


>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 326

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R  +     P+ +D++  +V AGL +  AV  +  +   PV +EFR+ ++   
Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  E++  +     L E+  F+  +    +LG +L+  L   +  LR ++  +A+ Q
Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288

Query: 121 ALSMEAK 127
           A+    K
Sbjct: 289 AMKTPIK 295


>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 349

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 37/183 (20%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+ ++D P ALD+I   + AG P+  A+ ++ G    P+ +E   V  +  LG S+
Sbjct: 165 QRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGASM 224

Query: 66  SESISRMV---------------RYMPL----------------QEVSFFSTVISVQSQL 94
           +E+  R++               R +P+                 E++ F+  +    + 
Sbjct: 225 AEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEES 284

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           G  L+ AL  L+   R R+  +    AL+   +A    +  L  C   L  F + G + V
Sbjct: 285 GARLAAALGRLADQTRARRQER----ALTAARRAGVTAVAPLGLCF--LPAFVALGVVPV 338

Query: 155 LIN 157
           ++ 
Sbjct: 339 VMG 341


>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 220

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P ALD+    + +G P+  A++      +  + + FRR   +  LG +L+E+++    +
Sbjct: 79  LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALT---EF 135

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134
             L +       I   +  G  L+++L  L++ LR DR+       ALS   +A  W++ 
Sbjct: 136 DSLADGHRLVQTIGRSADTGARLADSLHLLAKELRFDREQ-----AALSHAHRAGVWMV- 189

Query: 135 SLPFCVSTLVYFTSPGYMNVLIN 157
            LP C+  L  F + G + V+I+
Sbjct: 190 -LPLCLCFLPAFIAAGLLPVVIS 211


>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
 gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
          Length = 315

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 15/162 (9%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           PNALD I++                  +S  + +E   V +  +LG  LS+S      ++
Sbjct: 161 PNALDEIIKE---------------QNTSQVLINELITVKQNLNLGYPLSKSFMLAYEHL 205

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            ++E+  F+  +SV  + GGN+ E L       + +  +K   +      K S  +   +
Sbjct: 206 QIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLTVGI 265

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           P     LV F +P +         G ++  +A +F+L GI +
Sbjct: 266 PLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307


>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
 gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 281

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   VA+     +  +     R+I    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 LT-SLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M VL N
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279


>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
 gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
          Length = 314

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
           I++R     + FP++LD+I+  V AGL +  AV  +V +  ++ P  +E   ++  +   
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
               AK S  I+  L FC+  S  V    P  + V+
Sbjct: 273 ----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 268

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54
           K +I+KR ++    F + L  I  S+ AG  V  A       + ++       +  E   
Sbjct: 76  KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++ +++  + +   L+++  F+ V     + GGNL   + N + I+ D+  
Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    ++  +PF +  ++  T+  YM  + +   G +++  A   + I
Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255

Query: 175 GIMVMRLMINFDV 187
           G  V + +++  +
Sbjct: 256 GYFVSKKIMDIKI 268


>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 281

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   VA+     +  +     R+I    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M VL N
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVLPN 279


>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 287

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +  L KKR A  +   P  LD +  S+ AGL ++ A++  V +  S P+R EF +VI   
Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S ++S   M   + + E++   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250

Query: 120 QALSMEAK 127
           +AL    K
Sbjct: 251 KALEAPVK 258


>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 290

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 2   KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
           K L KK T +  D   + P  L+ IV  V AG  V  A+   V ++ D   P+ +E +R+
Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRM 191

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
           +     G    ++  +  +   +QEVS F+T + +  + GGN    AL +LSR+L +++ 
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             A+ +    E  +S  ++  +   +  +V   +P +M
Sbjct: 252 AIARTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286


>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
 gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
          Length = 314

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + + KR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 274 EEIAAKIPTK 283


>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 326

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 2   KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54
           K+ I KR     D     FP+ALD+++  V AG  +  A+  +  +   S  P+  EF  
Sbjct: 163 KYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEI 222

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G   ++ +  M   + +Q+V+ F T +   S  G +++EAL   S  +RD++ 
Sbjct: 223 VSYEMKAGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRI 282

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
            +A+ +A  +  K + +   ++ FCV  L+
Sbjct: 283 SRAEEKANKLPTKLTLF---TMLFCVPPLL 309


>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 256

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56
           L K+R  K L +F  AL ++   + AG  + +A       ++ ++G+++  +  EF+++ 
Sbjct: 67  LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENA-MISREFQKIS 125

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E     L + + +        L E+  FS + SV  + GG L   +   S ++ D+  + 
Sbjct: 126 EGLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGIS 185

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  LS   +    I+  +PF +   +  +SP ++ +L     G +L+       L+ +
Sbjct: 186 EEILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAV 245

Query: 177 MVMRLMINFDV 187
            +   +++ +V
Sbjct: 246 RLSERILDIEV 256


>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
           HTCC2654]
          Length = 329

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56
           +K  I+ R A+    FPNALD++  S  AG+   DA    VGQS    S  +  EF    
Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGF-DAAMTRVGQSLATVSPAISEEFLLCQ 227

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                     ++++ M   M + EVS F+ V+S   + G ++++AL   +  +R+ + MK
Sbjct: 228 AEILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMK 287

Query: 117 A 117
           A
Sbjct: 288 A 288


>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 306

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R  K L D P  LD+I  SV AGL    A+A ++      +  EF + ++   +G+ 
Sbjct: 152 IQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEITMGIE 211

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANL---SRILRDRKNMKA 117
              ++  M     ++E+S F + +    +LG +LS+ L    ANL    R +   K MKA
Sbjct: 212 RKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREKAMKA 271

Query: 118 KVQAL 122
            ++ L
Sbjct: 272 PIKML 276


>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
 gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
          Length = 323

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  + K+R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ ++++++V    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 278 EEIAAKIPTK 287


>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 295

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R+   L   P+ LD++  SV AGL    A+  +V +S  P+  EF   +    +G   
Sbjct: 144 RQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIRMGKPR 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            E++  M R + + +VS F   +     LG ++S  L   +  +R ++  +A+ +A
Sbjct: 204 REALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKA 259


>gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 96

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           GGN SE + NL +++RDR+    +++A++ E + +A ++  LP  ++      +P Y+  
Sbjct: 5   GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPNYLLH 64

Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           + +D  G ++L  A A    G +V+  M+
Sbjct: 65  MWDDESGKIMLSAAFALQATGCVVLWRML 93


>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
 gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
          Length = 288

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57
           ++   ++R  +  +  P+ +D++V  +  G+  ++A++ +   +  +   +  E   V  
Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+SL +S  RM     ++EV   ST +    + G  + EA+  LS +LR ++  +A
Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234

Query: 118 KVQA 121
           + +A
Sbjct: 235 EERA 238


>gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
          Length = 247

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 25/177 (14%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-------IVGQSSDPVRSEFRRVIE 57
           I+++  +    F + LD +  +++AG  V +A+++       + G+ +D  R E R + +
Sbjct: 59  IREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTR-ELREMED 117

Query: 58  TQHLGLSLSESISRMVRYMPL------QEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
                L LS  + R+  +M L      ++V  F+ V     + GG++ + L   +++L D
Sbjct: 118 K----LKLSVPVERL--FMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGD 171

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           +  +K +++A+    K+   ++  +PF +   +  TSPG++ VL  +     L GVA
Sbjct: 172 KIEVKKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGN-----LFGVA 223


>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
 gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
          Length = 290

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 2   KHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
           K L KK   R  + + + P  L+ IV  V AG  V  AV   V ++ D   P+ +E +R+
Sbjct: 132 KDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRM 191

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
           +     G    ++  +  +   +QEVS F+T + +  + GGN    AL +LSR+L +++ 
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRK 251

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
              + +    E  +S  ++  +   +  +V   +P +M
Sbjct: 252 AIGRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286


>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
 gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
          Length = 233

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 11/187 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +HL K+R  K     P  L  +   +R+G  V  A+  + G    P+  E   ++  + +
Sbjct: 46  RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQS-----QLGGNLSEALANLSRILRDRKNMK 116
           G  L++ +    R +P+     FS  + VQS     + GG  S+    L+  L+ ++++K
Sbjct: 106 GKPLTDCLEDWQRRVPV-----FSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIK 160

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-G 175
            +   L+ +A+  A I+  +P  +  L+ +    +  +      G  +L VA   M+I G
Sbjct: 161 ERQITLTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGG 220

Query: 176 IMVMRLM 182
            MV R+M
Sbjct: 221 WMVKRIM 227


>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           M+ + ++  A  L   P  LD +  +V AGL V+ A+   V +  D P+R EF  V+   
Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL   +++ R      + EVS     I+   ++G  L++ L   S   R  +  +A+ 
Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253

Query: 120 QALSMEAK 127
           QA+    K
Sbjct: 254 QAMEAPVK 261


>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 308

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  ++KR+ +   D P+ LD++  SV AGL    A+A +  +    +  EF R ++   +
Sbjct: 153 KIAMRKRSIQ--KDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMRM 210

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+   E++  M     + ++S F+T +    QLG ++ + L   S  +R+++  + + Q 
Sbjct: 211 GVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKR--RQRTQE 268

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           L+M+A         LP     LV+F  P    V++ 
Sbjct: 269 LAMKAPVKML----LP-----LVFFIFPAIFVVVLG 295


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%)

Query: 47  PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           P++    R+     LG+SL ++           E   F+  + V  + GGN SE + NL 
Sbjct: 2   PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61

Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +++RDR+    +++A++ E + +A ++  LP
Sbjct: 62  KLIRDREQAGRQLRAMTGETRMTALVLALLP 92


>gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842]
 gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842]
          Length = 327

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I ++++   L     V DA+  +       +R E  +      
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ FF  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           A + +     + +A I+ +LPF       F  P   ++L+  P G ++ 
Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFK----FFMPQAYSILMRTPLGSIVF 303


>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
 gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
          Length = 257

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +  +       +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G       +L+  A+
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 170 AFMLIGIMVMRL 181
            F+   I+ + L
Sbjct: 246 CFLAFKILDIEL 257


>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 264

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 88/193 (45%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54
           K +I+KR  +    F + L  +  S+ AG  +  +       +++I   S+  +  E   
Sbjct: 72  KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++  ++        L+++  F  V+    + GGN+ + + N S I+ D+  
Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    I+  +P  +   +  ++  YM  + +D RG +++ ++ A ++I
Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251

Query: 175 GIMVMRLMINFDV 187
              + + ++N  V
Sbjct: 252 AYFISKKIMNIKV 264


>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
 gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
          Length = 224

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLG 62
           KKR  K  + FP+ALD++V +  AGL    A   VA  +   S  + +E + V     LG
Sbjct: 68  KKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCRKVRLG 127

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + +  ++++ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA+ +A 
Sbjct: 128 VPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEA- 186

Query: 123 SMEAKASAWIIGSLPFCV 140
              AK    +I  L  C+
Sbjct: 187 ---AKIGTKMIFPLVTCI 201


>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 311

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    LG    +++  M+  
Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             + +V  F   +    QLG ++   L   S  +R R+  +A+ +A
Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEA 271


>gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
 gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
          Length = 257

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 12/192 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +  +       +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH------MLLGVAA 169
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G       +L+  A+
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 170 AFMLIGIMVMRL 181
            F+   I+ + L
Sbjct: 246 CFLSFKILDIEL 257


>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 296

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 59/116 (50%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +  +  P+ +D++V SV AGL +  A++ +  +   P+   F R +    LG S 
Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +   ++  +P++EV  F   +    +LG  +SE L + +  L+  + +KA+  A
Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHA 258


>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
 gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
 gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
 gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
 gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
 gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
 gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
 gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Burkholderia pseudomallei 1710b]
 gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 319

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FST++    + G ++  +L  LS  LR ++ M
Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 271

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308


>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
 gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
          Length = 290

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 2   KHLIKKRTAKFLD---DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
           K L KK T +  D   + P  L+ IV  V AG  V  A+   V ++ D   P+ +E +R+
Sbjct: 132 KDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRM 191

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
           +     G    ++  +  +   +QEVS F+T + +  + GGN    AL +LSR+L +++ 
Sbjct: 192 VLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRK 251

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
              + +    E  +S  ++  +   +  +V   +P +M
Sbjct: 252 AITRTRG---EQASSKLVLPMVVIFMIVIVLLGAPAFM 286


>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 279

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
           I  R    LD  P  +D+I   V+AG+ V  +V  I  +S+D    +      +++   +
Sbjct: 124 INTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEV 183

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L E +  + R M + E+  F   +      G +L E L  LS+ +RD + + ++ + 
Sbjct: 184 S-GLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKI 242

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             + AK S  +I  + F ++ L+   +PG + ++ N
Sbjct: 243 GKLSAKMSVPLILFIMFPITILI--AAPGILRIMQN 276


>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 223

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60
           +KK+    L + P  L+ I+  V AG  V  +    +   ++    P+++E  +      
Sbjct: 71  LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 130

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
           + +SL++S+  + R   +QE+S F+T + +  + GG +L+ AL NLS+ L +R+  KA  
Sbjct: 131 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 188

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           + L  EA +      +L F +  +V   +P  M
Sbjct: 189 RILGEEASSKLVFPMALIFLI-VIVIVAAPAMM 220


>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 205

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54
           ++ L +KR  +F   F NA+  +  +++AG  V +A+         + + +  +R EFR+
Sbjct: 13  LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTIC 186


>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
 gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
          Length = 247

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 66/134 (49%)

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E + +I    L +S+ ++IS       + ++  FS VI +  + GGNL EA+ N SRI+ 
Sbjct: 111 ETKIIINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIIS 170

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           ++  MK +++ L    +    I+  +P  +  ++  T+  Y+  +     G + + +   
Sbjct: 171 EKIEMKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLV 230

Query: 171 FMLIGIMVMRLMIN 184
            +++  ++   ++N
Sbjct: 231 LLIVAYLISNKIMN 244


>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 288

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQH 60
           +KK+    L + P  L+ I+  V AG  V  +    +   ++    P+++E  +      
Sbjct: 136 LKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELL 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
           + +SL++S+  + R   +QE+S F+T + +  + GG +L+ AL NLS+ L +R+  KA  
Sbjct: 196 MNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR--KAVS 253

Query: 120 QALSMEAKAS 129
           + L  EA + 
Sbjct: 254 RILGEEASSK 263


>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 296

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 6/153 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R      + PN LD ++ SV AGL    A+A      S P+  E  R ++    G S  
Sbjct: 143 ERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGRSRK 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+   +   + + ++  F   I      G  ++  L   ++ +R ++  +A+ QA+ +  
Sbjct: 203 EAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMKLPV 262

Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLIN 157
           K    ++  L FC+  +++     P  +NV+ N
Sbjct: 263 K----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291


>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 326

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           +KKR A+ +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V +    
Sbjct: 167 VKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  +  M   + + +V+ F T +   +  G +++EAL   S  +RD++ M+A+ +A
Sbjct: 227 GKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKA 286

Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157
            ++  K +   +G++ F +   L+    P   N+ + 
Sbjct: 287 NTLPTKLT---LGTMLFTLPPLLIILIGPSIHNIAVT 320


>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 313

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FST++    + G ++  +L  LS  LR ++ M
Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 265

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302


>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 293

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++R A+ L   P  LD +  +V AGL ++ A+   V +  + P+R E   V+     GL+
Sbjct: 140 RRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLKSGLN 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ QA+  
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259

Query: 125 EAK 127
             K
Sbjct: 260 PVK 262


>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
 gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
          Length = 285

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 1/177 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K  D   + +D + R+ + G  ++     +  ++  P+  E +       +G+S+ 
Sbjct: 103 RRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVSMK 162

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  +     +  ++  S  + V  + GG+L + L  L+R +RDR     +++  +  +
Sbjct: 163 AALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATAGS 222

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRLM 182
           +A+A ++  LP  +        P Y+  L+    G      A A  +IG + V+R++
Sbjct: 223 RATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVL 279


>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
 gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
          Length = 285

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQHLGLSLSESISR 71
            +P AL  +  +++ G     A+  +      P+R  F    R + T     +  E++  
Sbjct: 106 QYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVLE 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + +     +++  +  + +  + GGNL E L +L + L +R++ +  V A++ EA+ +A 
Sbjct: 166 VAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAA 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +LPF +  +    +P +M  + +   G+ L+   A  +L+G  V+R M++
Sbjct: 226 FLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMVS 278


>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
 gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
          Length = 320

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/149 (18%), Positives = 69/149 (46%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A   +  ++ +G  ++  +  +   + +PVR+EF R   +   G+S + ++ 
Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            ++  +P   +   +  + V  + G  L + LA  S ++ DR  +  +++  + +A+ SA
Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            ++  +P  ++ ++   S  +   L   P
Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP 293


>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
          Length = 281

 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   VA+     +  +     R++    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 LT-SLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 307

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +++IK++TA +    P+ LD++  SV AGL    A++ +V     P+  E         +
Sbjct: 151 RNIIKRKTAIY-HQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREISM 209

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKV 119
           G+   E++ R+       E+  F   I+   +LG ++   +   +  +R   ++N++ + 
Sbjct: 210 GIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQA 269

Query: 120 QALSME 125
           Q LS++
Sbjct: 270 QKLSVK 275


>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 291

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  K  D +P+A+D I   VRAGL + +A+A +  +  + +R  F R  E        
Sbjct: 105 RKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYRATGRF 164

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
            + + R+   M           + +  ++GG +L   L  LS  LR+    +A+++A   
Sbjct: 165 HDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAELEARQS 224

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +A +  + P+ V  ++     G +      P G ++L   A   ++   +M
Sbjct: 225 WTINAARLAVAAPWVVLAMLALRG-GSLQAYAT-PTGWLVLAFGAGLCIVAYRLM 277


>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 320

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRS-EFRRVIE 57
           ++ LIKKR  +  + FP+ LD+++    AGL ++ A+  +  +   S PV S E   V  
Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++  E++        ++E+  F   +S   + G ++++ L   S   RD++  +A
Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCV 140
           +     M AK    +I  L FC+
Sbjct: 279 E----EMAAKMGTKMIFPLIFCI 297


>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
 gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
          Length = 314

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
           ++ KR ++     P+ALD++V    +GL  + A+  +  +   S      E   V     
Sbjct: 157 MVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCVKIS 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +S++ + +++   L E++   T+++  S++GG+LS+ L   +   RD++N + +  
Sbjct: 217 AGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEIEEI 276

Query: 121 ALSMEAK 127
           A  +  K
Sbjct: 277 AAKIPTK 283


>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
 gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
          Length = 323

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ +++    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 278 EEIAAKIPTK 287


>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
 gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
          Length = 254

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 84/179 (46%), Gaps = 8/179 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           F +A+  ++ S++AG  + +A       + ++ G++SD +     R+ +     + L + 
Sbjct: 77  FKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSD-ISFYLSRISKGLRNNVPLEKL 135

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           I  M +     ++  F+ V SV  + GGN++E +     ++  +  ++ +++ L    + 
Sbjct: 136 IFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVLISAKRL 195

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            A I+  +PF +   +  TSPG+ + L ++  G  L+ V      I   +   ++N  +
Sbjct: 196 EARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCISYYLSEKIVNISI 254


>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 275

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 114 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 167

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FST++    + G ++  +L  LS  LR ++ M
Sbjct: 168 LLEMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRM 227

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 228 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 264


>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
 gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           I++R  K  + FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V      
Sbjct: 168 IEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKA 227

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G      +  M     +Q++S F TV+   +  G ++++AL   +  +RD++ M+A+  A
Sbjct: 228 GKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAA 287

Query: 122 LSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
             +  K +   +G ++P  +  LV  +  G MN+
Sbjct: 288 NKLPVKMTLATMGLTVPPLLIILVGPSIQGIMNM 321


>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
           MSMB43]
          Length = 279

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R  K ++DFP+ALD++   V AGL +  A+  +    +D +R   R  I    LGL 
Sbjct: 118 IRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPIVADELGLM 171

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  F  ++    + G ++  +L  LS  LR ++ M
Sbjct: 172 LLEIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRM 231

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 232 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 268


>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
 gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
          Length = 301

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/182 (18%), Positives = 81/182 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R A+F +    +L ++  ++RAG  +  A+  +   S DP++SE         +   +
Sbjct: 119 KSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQIDGDI 178

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             ++  M +    +++      ++   ++GG+L+++L  +   +  R +++  +++ +  
Sbjct: 179 VAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIESETSS 238

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             AS   +  +   +  ++    P   +    DP G  +L V   F   G +++  M + 
Sbjct: 239 VIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIYKMADI 298

Query: 186 DV 187
           DV
Sbjct: 299 DV 300


>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           ++KR  +    FP+ALD+++  V AG  +  ++  +  +   S   +  EF  V      
Sbjct: 153 VEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G      ++ M     +Q+VS F TV+   +  G ++S+AL   +  +RD++ M+A+  A
Sbjct: 213 GKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAA 272

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  K + A ++ ++P     L+   +P  MN+
Sbjct: 273 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 303


>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 331

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ +D++  SV AGL    A+  +  +   PV +EFR+ ++   LG+   E++  +   
Sbjct: 189 LPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLADR 248

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             L E+  F+  +    +LG +L+  L   +  LR ++  +A+ QA+    K        
Sbjct: 249 CELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIK-------- 300

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
               +  LV F  P    VL+    G  L+ + AAF
Sbjct: 301 ---MLLPLVLFIFPTLFIVLL----GPALIQILAAF 329


>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 282

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSS--DPVRSEFRRVIETQ 59
            L+++R    + + P AL  ++  V AG PV  A +  + G+     P+  E+ RV+   
Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN 97
             G S S ++ R  R   +QEVS F+TVI +  + GG+
Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGD 226


>gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I ++++   L     V DA+  +       +R E  +      
Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ F+  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           A + +     + +A I+ +LPF       F  P   ++L+  P G ++  + +  +L
Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 308


>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 310

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R  +     P+ALD++  SV AGL    A+  +  ++   +  EF  +++  H+G  
Sbjct: 157 IRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECHMGKP 216

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++  M   + + ++S F   I +   LG ++   L   S+ +R ++  + K + L+M
Sbjct: 217 RREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKR--RQKTEELAM 274

Query: 125 EA 126
           +A
Sbjct: 275 KA 276


>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 13/168 (7%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57
           H + +   K   +F   +  I  S+ AG  + +A+        + +    +  E + +I 
Sbjct: 63  HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    LS+ ++ ++
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + A  ME K    I+  +P+ +   V   +PGY ++L     G
Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226


>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
 gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
          Length = 205

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI------VGQSSDPVRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+         + + +  +R EFR+
Sbjct: 13  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205


>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 312

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIET 58
           + HL+  R  +  + FP+ALD++   V AGL    A+  +    Q   P  ++  R++  
Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206

Query: 59  Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +   G     ++  +     ++EV  F T+IS   + G +++ +L   + +LR R+  +A
Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +  A    AK +  ++  L FC+  S +V    P  + +
Sbjct: 267 EEAA----AKIALKLLFPLIFCIFPSLMVVLMGPAMIQI 301


>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 249

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/174 (18%), Positives = 78/174 (44%), Gaps = 6/174 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+         + + +  +R EFR+
Sbjct: 57  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + + 
Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTIC 230


>gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 327

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 14/177 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGL----PVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I ++++   L     V DA+  +       +R E  +      
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ F+  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           A + +     + +A I+ +LPF       F  P   ++L+  P G ++  + +  +L
Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFK----FFMPQAYSILMRTPLGSIVFVLTSLIIL 311


>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
 gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
          Length = 314

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 275 EEIAAKIPTK 284


>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
 gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
          Length = 314

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 275 EEIAAKIPTK 284


>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++ L K+R  K    FP+ALD++V    AGL +  A   VA  +  S   + SE   V  
Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   R+++   A
Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 278 EEQAAKLAVK 287


>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
 gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FS ++    + G ++  +L  LS  LR ++ M
Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308


>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 158 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FS ++    + G ++  +L  LS  LR ++ M
Sbjct: 212 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308


>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
           ++R A+ L      LD +  +V AGL ++ A+   V +  + P R E   V+     GL+
Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLKSGLN 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ QA+  
Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQAMEA 259

Query: 125 EAK 127
             K
Sbjct: 260 PVK 262


>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
 gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVIETQ 59
           +R    L  F + L+ +  S   G     A       +A I G+ +D V  E   ++   
Sbjct: 91  RRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVH-EIEMIVNGI 149

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G ++   +        L +V  F+T+  V S+ GGNL +A+ +  RI+ ++  M+ ++
Sbjct: 150 YNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEMEMEI 209

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           + L    K    I+  +P  +  +V  +  G M+++ N P
Sbjct: 210 RTLLTANKNELNIMMLMPLII--MVTLSGMGSMSIVQNTP 247


>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 158 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 211

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FS ++    + G ++  +L  LS  LR ++ M
Sbjct: 212 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 271

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 272 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 308


>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
           IK+R     + FP++LD+I+  V AGL +  AV  +V    D    +  E+  +      
Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A+ +A
Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
               AK    ++  L FC+   +Y
Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292


>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 313

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
           IK+R     + FP++LD+I+  V AGL +  AV  +V    D    +  E+  +      
Sbjct: 153 IKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A+ +A
Sbjct: 213 GLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
               AK    ++  L FC+   +Y
Sbjct: 273 ----AKIGTKVLFPLIFCLFPALY 292


>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
 gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++HL  +R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++  L   S   RD++   A
Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 280 EEQAAKLAVK 289


>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++R  + L   P  LD +  +V AGL ++ A+   V +  + P+R E   V+     GL+
Sbjct: 140 RRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLKSGLN 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ QA+  
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259

Query: 125 EAK 127
             K
Sbjct: 260 PVK 262


>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L   P  LD +  +V AGL ++ A+   V +  + P+R EF  V+     GL+  E++ R
Sbjct: 147 LKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALYR 206

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           M   + ++EV+     +    ++G  LS++L   S   R  +  +A+ QA+    K
Sbjct: 207 MDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVK 262


>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +IK R  +  ++FP+A D+++  V AGL +  A+  +  +    S+ +  E      
Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     ++E+  F+T+++   + G ++ E+L   S  LR ++ ++A
Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           +  A  +  K    ++  +  C+S ++
Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI 281


>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++ L K+R       FP+ALD++V    AGL +  A   VA  +  S   + SE   V  
Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 279 EEQAAKLAVK 288


>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 337

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           +  RT +  D FP+ALD+++  V AG  +   +  +  +  SS P +  EF  V      
Sbjct: 176 VAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKA 235

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL     +        + +V+ F TV+    Q G +++EAL   +  +RD++ M+A+  A
Sbjct: 236 GLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAA 295

Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLIN 157
             +  K +   +G++ F V   L+    P   +++ N
Sbjct: 296 NKIPTKMT---LGTMMFTVPPLLIILVGPSVHDMMEN 329


>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 313

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 152 IAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 205

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FS ++    + G ++  +L  LS  LR ++ M
Sbjct: 206 LLEMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 265

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 266 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 302


>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 69/127 (54%), Gaps = 3/127 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRM 72
           ++ P AL I++ S+ +G  +++A+  +V  +   V   FR+VI   +H  +S  E+I+ +
Sbjct: 85  NNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEHQKISFEEAITVV 144

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 + +   + ++    + GG+LS++L  L++ L D K+ K ++ +++    A  +I
Sbjct: 145 STLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFI 204

Query: 133 I--GSLP 137
           I  G +P
Sbjct: 205 ILCGVIP 211


>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
 gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ + +    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 278 EEIAAKIPTK 287


>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 304

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R+ +     P+A+D++  SV AGL    AV  +   +  P+  E  RV+    LG S S 
Sbjct: 156 RSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREMQLGQSRSA 215

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +     + E+  F   +     LG  +++ L   SR +R ++   A+ +A  +  K
Sbjct: 216 ALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEERAQQVPVK 275

Query: 128 ASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
            +  +I    FC+   ++     P  +N++
Sbjct: 276 ITVPLI----FCILPCLFVVVLGPAVLNIM 301


>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 290

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+K    ++ DFPNA+  I   V  G+ + +A   +   S +P+  + R V++  + G+S
Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVIS--VQSQLGGNLSEALANLSRILRDRK 113
             +++ R       +E+  FST I+  ++S  G +L++ L   + +L + K
Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESD-GTHLADTLIKQADLLLNEK 250


>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 309

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR        P+ALD++  SV AGL    A+  +  +  D +  EF++V+    LG +
Sbjct: 156 IKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIRLGRT 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
             E++  +     + +V  F+  +    QLG ++S+ L
Sbjct: 216 RREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKIL 253


>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
 gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/193 (16%), Positives = 85/193 (44%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ- 59
           ++ +  K+  +F   F +++ I+  +++AG    +A+           +SE R + E + 
Sbjct: 5   LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64

Query: 60  -----HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
                 + + + + +S     +  ++V  F TV +   + GG+    + +  +++ ++  
Sbjct: 65  MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+  +PF +   +  T   ++ VL  +P G +++ +  A    
Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184

Query: 175 GIMVMRLMINFDV 187
             +  + MI  +V
Sbjct: 185 AYIWGKKMIKIEV 197


>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRS---EFRRVI 56
           L+ +R  +    F  AL  +  S+ AG  V +A    +        DP      EFR V 
Sbjct: 98  LLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVK 157

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G  L +++  + +   L +++ FS V +V  + GG+L E +   S+ + ++  +K
Sbjct: 158 YRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVK 217

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
            ++  L  + +  A I+ ++PF     +   +P YM  L     G++LL + 
Sbjct: 218 QEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYGGG-GYVLLTIG 268


>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 306

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    +R  +     P+ LD+++ SV AGL    A+  +  +    +  E  + ++   +
Sbjct: 149 KRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIRM 208

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  E++  M     + ++S F + +    QLG N+++ L   +  +R R+ M+A+ +A
Sbjct: 209 GKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEA 268

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           +    K            +  LV+F  P    VL+
Sbjct: 269 MRAPIK-----------MLFPLVFFIFPALFVVLL 292


>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
 gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 296

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R    ++DFP+ALD++   V AGL +  A+  +    +D +R   R  +    LGL 
Sbjct: 135 IASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKV----ADELR--LRSPVVADELGLM 188

Query: 65  LSESISRMVRYMPL---------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           L E  S   +   L         ++V  FS ++    + G ++  +L  LS  LR ++ M
Sbjct: 189 LLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRM 248

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +A+ +A    AK +  ++  L FC+  + L     P ++++
Sbjct: 249 RAEERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 285


>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
 gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62
           +KR  +  D FP++LD+++  + AG  +  ++  +  +   S   +  EF  V      G
Sbjct: 169 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIKAG 228

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +  M     +Q++S F TV+ VQSQ  G ++ EAL   +  +RD++ M+A+ +A
Sbjct: 229 RDKPSVLGEMAERCGVQDISSFVTVL-VQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKA 287

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
             +  K + A ++ ++P  +  LV  +  G M++L
Sbjct: 288 NKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322


>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 322

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +R  + +  FP+ALD+++  V AGL +    D V   +  S   V +   +V+     G 
Sbjct: 164 RRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A+ +A  
Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHR 283

Query: 124 MEAKASAWIIGS-LPFCVSTLV 144
           +    S  ++   LP  +  L+
Sbjct: 284 LPVLLSVPLVACMLPVMIGVLM 305


>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
 gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
          Length = 313

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
           IK R     + FP++LD+I+  V AGL +  A+  +V +  ++ PV + E+  +      
Sbjct: 153 IKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLS  +++        + +VS    ++    + G +++ +L   S +LR ++ M A+ +A
Sbjct: 213 GLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
               AK    I+  L FC+   +Y
Sbjct: 273 ----AKIGTKILFPLIFCIFPSIY 292


>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
 gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +++R  +  + FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +      
Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRA 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   S  ++ M     +Q+VS F TV++  +  G ++++AL   +  +RD++ M+A+ +A
Sbjct: 225 GKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKA 284

Query: 122 LSMEAK 127
             +  K
Sbjct: 285 NKLPTK 290


>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
           P  LD +  SV AGL ++ A+   V +  + P+R EF  V+     GLS ++++ RM   
Sbjct: 151 PVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDLKSGLSRADALRRMDDR 210

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           + ++EV+ F   +    ++G  L+  L   S   R  +  +A+ QA+    K
Sbjct: 211 LRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEKQAMEAPVK 262


>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 318

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 74/160 (46%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           M+ L++ R  K  +D P+ALD++   V AGL +  A   V   +G  S  ++ EF  V+ 
Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + QA  +  K            +  L++F  P  + VL+ 
Sbjct: 270 EEQAAKIALK-----------LLFPLMFFIFPTLLAVLVG 298


>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  L+  T P   N+  N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270


>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 326

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
           IK R    ++  P+ALD++V  V AG+ +  A + +  +  +++PV + E   VI     
Sbjct: 167 IKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S +E++  +   + L++V+   T+I      G ++S  L   S  +R  +  +A+  A
Sbjct: 227 GKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIA 286

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
             M  K    ++  L FC+   ++ T   P ++ ++
Sbjct: 287 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 318


>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
 gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
          Length = 284

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  L+  T P   N+  N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVLMLMA-TQPAVRNIY-NSFAGFVLMFAGAGLSVIAYRIM 270


>gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
 gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
          Length = 296

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 1/170 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D P+   ++  ++ AG   S A+A +           F++       G S+SE ++ M  
Sbjct: 122 DMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMAH 181

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +    V F  T + +  + G  L       ++++  ++  K  +   + +A+ S  ++ 
Sbjct: 182 TLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVVS 241

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           SLP  + +++   S  +    I  P G + LG+AA    I +M++R ++ 
Sbjct: 242 SLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 290


>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 324

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           ++KR  +    FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +      
Sbjct: 165 MEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKA 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   S+ ++ M      Q+VS F TV++     G ++S+AL   +  +RD++ M+A+  A
Sbjct: 225 GKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAA 284

Query: 122 LSMEAK 127
             +  K
Sbjct: 285 NKLPTK 290


>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 293

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
           ++R A+ L      LD +  +V AGL ++ A+   V +  + P+R E   V+     GL+
Sbjct: 140 RRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLKSGLN 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ +A+  
Sbjct: 200 RTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKKAMEA 259

Query: 125 EAK 127
             K
Sbjct: 260 PVK 262


>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV------IVGQSSDPVRSEFRRV 55
           K LI  +  K + +F  A+ II   + AG  + +++        ++    + +  EF  +
Sbjct: 36  KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +++   ++ D+  +
Sbjct: 96  NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++   P  +   +  +SPG+ N++     G + +       L  
Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 216 IYISKGLLNIEV 227


>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62
           +KR  +  D FP++LD+++  + AG  +  ++  +  +  +S P  +E   ++  Q   G
Sbjct: 167 QKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAG 226

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++ M     +Q+++ F TV+ VQSQ  G ++ EAL   +  +RD++ M+A+ +A
Sbjct: 227 RDKPSVLNEMAERCGVQDITSFVTVM-VQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKA 285

Query: 122 LSMEAKAS 129
             +  K +
Sbjct: 286 NKLPTKMT 293


>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  + L   P+ALD++  SV AGL    A+  IV +  + +  EF  V+    LG S
Sbjct: 487 ITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMKLGKS 546

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +++  M   + L E+    + I    ++G ++   L+  S  +R R+  +A+
Sbjct: 547 RRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAE 600


>gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
 gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
          Length = 274

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 11  KFLDDFPNALD----IIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           K +D    AL+     ++  ++AG P+     +A   +V    +P ++EF   +     G
Sbjct: 87  KAVDAAAEALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAG 143

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL E++ +      L+ +     V +   + GG+ +     +   LR+++   A V A 
Sbjct: 144 LSLDEALGQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAAR 203

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA ++  LP  V+       P ++  L NDP G   L    A  L GI ++R +
Sbjct: 204 TAEARLSARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263

Query: 183 IN 184
             
Sbjct: 264 AG 265


>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 322

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +R    +  FP+ALD+++  V AGL +    D V   +  S   V +   +V+     G 
Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A+ +A
Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKA 281


>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           I++R  +    FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V +    
Sbjct: 168 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKA 227

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + +  M     +Q+VS F TV+   +  G +++EAL   +  +RD++ M+A+  A
Sbjct: 228 GKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAA 287

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  K + A +  ++P  +  LV  ++ G  N+
Sbjct: 288 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 321


>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
 gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Aromatoleum aromaticum EbN1]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           +  LI  R  +  + FP+ALD++   V AGL V  A   VA  +   S+ +  E   V  
Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL  + ++  +     ++EV  F  ++    + G +++ +L   S +LR R+  +A
Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +        +A+A I   L F    L++F  P  M VL+ 
Sbjct: 267 E--------EAAAKIALKLLF---PLIFFIFPSLMLVLLG 295


>gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM
           15829]
          Length = 314

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            D P+   ++  ++ AG   S A+A +           F++       G S+SE ++ M 
Sbjct: 139 HDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCGSSISEVLNDMA 198

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +    V F  T + +  + G  L       ++++  ++  K  +   + +A+ S  ++
Sbjct: 199 HTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVKTAQARLSIRVV 258

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            SLP  + +++   S  +    I  P G + LG+AA    I +M++R ++ 
Sbjct: 259 SSLPLVLISVLSCISLDFQKG-ITRPAGLISLGIAAFLDFIALMIIRSLLK 308


>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 284

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61
           IK+R  + ++  P+ALD++V  V AG+ +  A+A +    QS+ PV   E +  I     
Sbjct: 125 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 184

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A+  A
Sbjct: 185 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 244

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
             M  K    ++  L FC+   ++ T   P ++ ++
Sbjct: 245 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 276


>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 323

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIE 57
           + H + +R     ++FP+ +D++   V AGL +  A+  +  + +   PV + E + ++ 
Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L ++L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           + QA    AK +  ++  L F +  S L+    P ++ +
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311


>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  +     P+ALD++   V AGL    A+A +  +    +   F RVI+   LG +
Sbjct: 162 ISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQLGKT 221

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +++  M   + + E++ F   +    QLG ++++ L   S  +R R+   A+ +A
Sbjct: 222 RRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEA 278


>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV---IETQH 60
           L + +  K  ++ P AL IIV ++ +G  +++A+  +V  +   V   F RV   IE Q 
Sbjct: 74  LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  S  ++++ +  +   + +     ++    + GGNLSE L  L++ L D +  K ++ 
Sbjct: 134 L--SFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLM 191

Query: 121 ALSMEAKASAWII 133
           +++  + A  +I+
Sbjct: 192 SVTANSLAMGFIM 204


>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
 gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
          Length = 328

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 72/134 (53%), Gaps = 9/134 (6%)

Query: 2   KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRV 55
           K+ + KR  +  +D    FP++LD+++  V AG  +  ++  +  +  +S P  +E  ++
Sbjct: 162 KYWVTKRQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQI 221

Query: 56  IETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRK 113
           +  Q   G      ++ M     +Q++S F TV+ VQSQ  G ++++AL   +  +RD++
Sbjct: 222 VANQIKAGRDKPSVLNEMAERCGVQDISSFVTVL-VQSQTFGTSIADALRVYAGEMRDKR 280

Query: 114 NMKAKVQALSMEAK 127
            M+A+ +A  +  K
Sbjct: 281 VMRAEEKANKLPTK 294


>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 326

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGL 63
           +R  + ++ FP++LD+++  V AG  +  ++  +  +  S  P +  E++ V      G 
Sbjct: 169 ERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMKAGK 228

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++ +  M     + ++S F TV+    Q G +++EAL   S  +RD++ M+A+ +A +
Sbjct: 229 DKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEKANT 288

Query: 124 MEAK 127
           +  K
Sbjct: 289 LPTK 292


>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 323

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPV-RSEFRRVIETQHL 61
           IK+R  + ++  P+ALD++V  V AG+ +  A+A +    QS+ PV   E +  I     
Sbjct: 164 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 223

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A+  A
Sbjct: 224 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 283

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
             M  K    ++  L FC+   ++ T   P ++ ++
Sbjct: 284 AKMPVK----LLFPLVFCILPALFVTIMGPAFIKLM 315


>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
 gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
          Length = 303

 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R        P+A+D++V SV AGL    A+  +V +  + +  EF R +    +G+ 
Sbjct: 151 IAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMRMGIP 210

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +++  + R + + +++ F   +    QLG ++S+ L   +  +R R+  +A+     +
Sbjct: 211 RRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQ----EL 266

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             KA   +I  + F +   +Y
Sbjct: 267 AHKAPIKMIFPMVFLIFPALY 287


>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +  L KKR    +   P  LD +  S+ AGL ++ A++  V +  + P+R EF +VI   
Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S +++   M   + + EV+   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250

Query: 120 QALSMEAK 127
           +AL    K
Sbjct: 251 KALEAPVK 258


>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 15/135 (11%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL------ 61
           R  ++ D FP+ LD++V SV AGL +  AV  +    +D +   +  +  T HL      
Sbjct: 148 REREYADGFPDLLDLLVASVEAGLSLDAAVTRV----TDELERRYPNL--TVHLRFLVLE 201

Query: 62  ---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G +  ++ S     + +++    +T++    ++G +L + L   S+ +R ++ ++A+
Sbjct: 202 LRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRAE 261

Query: 119 VQALSMEAKASAWII 133
            +AL++ AK +  +I
Sbjct: 262 EKALALSAKLTVPLI 276


>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 313

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +K  I  R  + L   P  LDII   V AGL +  A+A  V +     VR EF+RV+   
Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  M   +    V+ F   +    ++G NL   L   +   R  + ++A  
Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRA-- 273

Query: 120 QALSMEA 126
           + L+MEA
Sbjct: 274 EKLAMEA 280


>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
           SSC/2]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-----VGQSSDPVRSEFRRVIE 57
           H   +   K   +F   +  I  S+ AG  + +A+        + +    +  E + +I 
Sbjct: 63  HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN----LSRILRDRK 113
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    LS+ ++ ++
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +   + A  ME K    I+  +P+ +   V   +PGY ++L     G
Sbjct: 183 EIHTMIAAKQMEKK----IMSVMPYFILLYVRIANPGYFDILYESFAG 226


>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++ L  +R  +    FP+ALD++V    AGL +  A   VA  +  S   + SE   V  
Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 278 EEQAAKLAVK 287


>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
          Length = 323

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP-VRSEFRRVIETQH 60
           I++R       FP+ALD+++  V AG  +  ++ V VG   Q+S P +  EF  V     
Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQSI-VRVGKELQASYPELAEEFEIVAHEMK 226

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A+  
Sbjct: 227 AGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286

Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
           A  +  K +   +G ++P  ++ L+  +  G  N+
Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321


>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
 gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +  P A   +  S+ +G  ++  +  +   + +PV +EF RV      G+S ++++  ++
Sbjct: 136 EAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISATDALDDLL 195

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +    +S  +  + V  + G  L++ L+  S ++ +R  +K ++   + +A+ SA ++
Sbjct: 196 VRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMV 255

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++P  +  ++   S  +   L   P G   + +  A   + ++V+R ++  ++
Sbjct: 256 AAMPTGMCAVLALLSADFRRGLAT-PAGAGAVVLGLALNAVALVVIRRIMRVEL 308


>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A    +G+ +D +R +   + E  H
Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTDEIRIKSEALAEELH 192

Query: 61  L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                   G +  +S+  +     + E+  F+ +++   + G ++ E+L   S  LR ++
Sbjct: 193 WTNLEMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252

Query: 114 NMKAKVQALSMEAK 127
            M+A+  A  +  K
Sbjct: 253 QMRAEELAAKIPTK 266


>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR    L   P+ALD++  SV AGL    A+  +  +  + +  EFRR +    LG  
Sbjct: 149 IKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIRLGTQ 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
             E+   M     +++++ F + +    QLG ++ + L
Sbjct: 209 RHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKML 246


>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 304

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 8/181 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRRVI 56
           L+++R  +    F  AL  +  S+ AG  V +A       + ++    S  +  EF  ++
Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G  +   I        L++++ F+ V     + GGNL E +   S ++ ++  + 
Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIG 175
            ++  +  + K  + I+ + P  +  ++ F+SP YM  L     R  M +G+   F+ + 
Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYEGAGRLIMTIGLTVLFLCLW 294

Query: 176 I 176
           I
Sbjct: 295 I 295


>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  +DI+  SV AGL    A+  +  ++  P+  EFR       LG    E+++R+   
Sbjct: 163 LPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSER 222

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
             ++EV  F+  I    +LG +L   L + S+++R       + +A  +  K
Sbjct: 223 TEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVK 274


>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 314

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57
           +K+LI +R  +  + FP+ALD++   V AGL +  A+A +   +G  S  +  E + V  
Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++  +     + +V     ++    + G +++++L   S  LR ++  +A
Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           + QA    AK +  ++  L F +  S LV    P ++ +
Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQI 302


>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
 gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/192 (16%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55
           + L ++R  +   +F + + ++   + AG  + +AVA       ++  +   +  EF  +
Sbjct: 117 EDLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEM 176

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++      +     L++V+ F+ V +   + GG+L E +++ + ++RD+  +
Sbjct: 177 ARGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQV 236

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++        I+  +P  +   +  TSPG+ +++     G +++    A   I 
Sbjct: 237 QEEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGIS 296

Query: 176 IMVMRLMINFDV 187
           +++ R ++  ++
Sbjct: 297 LLLARRILQVEI 308


>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 11/160 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +  + +P A+D +  +VRAG+ + DA+A +  +  +P+R  F +      +    
Sbjct: 98  RRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTGRF 157

Query: 66  SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            E + R+   +  P+ +       I+ +   GG L   L NLS  LRD    +++++A  
Sbjct: 158 GECLDRLKERLADPVGDRVVEGLRIAREVG-GGELGRLLRNLSSYLRDDARTRSELEARQ 216

Query: 124 ME-------AKASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155
                    A AS W ++  + F    +  + SPG + VL
Sbjct: 217 AWTVNGARLAVASPWLVLLFMSFQSEVIHRYASPGGVLVL 256


>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 50/98 (51%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  + L+  P+ALD++  +  AGL   +A+  I  + ++ +  EF RV+    +G+ 
Sbjct: 155 IGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMSMGVP 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
             ++++ M     + +++ F + I     LG ++   L
Sbjct: 215 RRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVL 252


>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 17/160 (10%)

Query: 3   HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57
           HL +K R  +     P+ LD++   V AGL + DA  +   ++     +P+  E R+V  
Sbjct: 144 HLKVKARQLEIFHPLPDILDLVTLCVEAGLSI-DAALIRTTETPQFRDNPLAIEIRQVTM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A
Sbjct: 203 EVRAGKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +      EA A   I    P     L+ F  P  + V++ 
Sbjct: 263 E------EAAAKTTIKLIFP-----LIMFIFPALLVVILG 291


>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
           +KKR        P +LD++  SV AGL  + A+A +V +    P+R E + V++   +G 
Sbjct: 141 VKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQLKMGK 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +  E +  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+
Sbjct: 201 TREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255


>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  E+ + + R 
Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMSRREAFTELRRR 213

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267


>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
 gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
          Length = 291

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLG 62
           L ++R  + L +FP  LD+    V AGL +  A+        D P+R E R  +     G
Sbjct: 137 LARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADMRAG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   +++  +     L  V    T ++   QLG +L   L + S   R  + ++A+  AL
Sbjct: 197 VPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEKLAL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVY 145
               K    ++  + FC+    +
Sbjct: 257 EAPVK----MLFPMVFCIFPCTF 275


>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 324

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 9/155 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
           + +R     ++FP+ +D++   V AGL +  A+  +  + +   PV + E + ++     
Sbjct: 161 VAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
               AK +  ++  L F +  S L+    P ++ +
Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311


>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 307

 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R +  +   P+A+D++  SV AGL    A+  +V +  + +  EF R++    +G S
Sbjct: 154 IKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIRMGQS 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++  +     + +++ F + +    QLG ++++ L   S+ +R R+  +A+ QA   
Sbjct: 214 RREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQA--- 270

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             KA   +I  + F +   +Y
Sbjct: 271 -HKAPVKMIFPMVFLIFPALY 290


>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/196 (16%), Positives = 86/196 (43%), Gaps = 14/196 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS----------E 51
           +  +KKR  +    F   +  +  ++ AG  V +A     G++   +R           E
Sbjct: 54  ESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAF----GEALRELRQLYEEDAMIVRE 109

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           FR ++    +  SL + ++ +     ++++  F+ + S   + GGNL   + N  + +  
Sbjct: 110 FRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQ 169

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           ++  + ++       +    I+  +P  +   V   SPG+++V+ ++P G +++ +    
Sbjct: 170 KEETRREINTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLV 229

Query: 172 MLIGIMVMRLMINFDV 187
             +  +  R +++ +V
Sbjct: 230 YFLAWLWGRKIVSIEV 245


>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 3   HL-IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIE 57
           HL +K R  +     P+ LD++   V AGL + DA  +   ++     +P+  E R+V  
Sbjct: 144 HLKVKARQLEIFHTLPDILDLVTLCVEAGLSM-DAALIRTTETPQFRDNPLAIEIRQVTM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A
Sbjct: 203 EVRAGKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTA 262

Query: 118 KVQA 121
           +  A
Sbjct: 263 EEAA 266


>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 15/162 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56
           + H   +R  K     P+ LD+I   V AGL + DA  +   ++    +DP+  E +   
Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSM-DAALIKTTETPQFANDPLAKEIKIAT 201

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G    ES+  M     + +V  F T++S   + G +LS+AL+  +  LR ++   
Sbjct: 202 METRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQM 261

Query: 117 AKVQALSMEAKASAWIIGSLPFCV----STLVYFTSPGYMNV 154
           A+      EA A   I    P  +    + LV    P Y+ +
Sbjct: 262 AE------EAAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297


>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
 gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/182 (18%), Positives = 81/182 (44%), Gaps = 4/182 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + +KR  KF   F  A+  I   ++    + +A+  ++  + +P++ E ++++    
Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180

Query: 61  LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            G+SL E++    +    PL E    S V +   Q+  N ++    +S  +++R     K
Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFA--GQMKANTADICQKMSAKIKERIRQNNK 238

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           + +     K++  +I ++   +    Y + P Y           +LL +  ++++  + V
Sbjct: 239 ISSFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEAFTTTAGKLVLLYIIISYVVTTVFV 298

Query: 179 MR 180
            R
Sbjct: 299 FR 300


>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +R     + FPN LD+I+  V AGL +    D V+  + ++   V     R       G 
Sbjct: 164 RRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGA 223

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           +  E++ RM     + E+  F+T++    +LG ++   L   +  +R+++ M+A+ +A
Sbjct: 224 TREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKA 281


>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVI 56
           +L K+R  +    F   + ++   + AG  + + + + + +        + +  EFR + 
Sbjct: 55  NLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILS 114

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           +   +     E      R   +++V  F+ V+S   + GG L E +   + I+RD+  +K
Sbjct: 115 DGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQVK 174

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH-----MLLGVAAAF 171
            ++  +         I+  +PF +   +  TSPG+ +V+     G       L   A A 
Sbjct: 175 EEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGAL 234

Query: 172 MLIG 175
           +L G
Sbjct: 235 VLAG 238


>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 324

 Score = 43.1 bits (100), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 80/155 (51%), Gaps = 9/155 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
           + +R     ++FP+ +D++   V AGL +  A+  +  + +   PV + E + ++     
Sbjct: 161 VSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  ++++ +     +++V  F++++    + G +L E+L  LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
               AK +  ++  L F +  S L+    P ++ +
Sbjct: 281 ----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQI 311


>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
 gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
          Length = 254

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A   +  S+ +GL ++ A+  + G+S +PVR+EF         G+S  +++  +V  
Sbjct: 84  MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +    +      + V  + G +L+  L+  + ++ +R  +   ++  + + + SA ++  
Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +P  +   +   S  +   +   P G   L VA A  +   +V+R ++  D
Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253


>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
 gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
          Length = 327

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           I++R  +    FP+ALD+++  V AG  +  A+  +  +   S   +  EF  V      
Sbjct: 169 IEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMKA 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + +  M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+  A
Sbjct: 229 GKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  K + A +  ++P  +  LV  ++ G  N+
Sbjct: 289 NKLPTKMTLATMTLTVPPLLIILVGPSAQGIANL 322


>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  ++ + + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262


>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  ++ + + R 
Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 209

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 210 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 263


>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 312

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 11/160 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H I  R  +  + FP+ALD+I+  V +GL + DA    VG+            +   +
Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGL-DAALARVGEEMHVRSPTLGEELHLIN 205

Query: 61  LGLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           L L    S  R +R + L    +EV     ++    + G N+S++L    R+  D    K
Sbjct: 206 LELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSL----RVHADSLRTK 261

Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
            ++ A    AK +  ++  L F +  S L+    P ++N+
Sbjct: 262 RRLLAEEAAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301


>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
 gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGL 63
           I +R    L +FP  LD++V  +RAGL  + A+   I    +  +R EF +V+     G 
Sbjct: 156 INRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREIRAGK 215

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           S  E++  +   M L+ +S F   ++   + GG +   L   +   R+ +   A++ A
Sbjct: 216 SRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEIAA 273


>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  ++ + + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262


>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  ++ + + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262


>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 314

 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
           I++R     + FP++LD+I+  V AGL +  AV  +V +  ++ P  + E+  +      
Sbjct: 153 IRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTLELRA 212

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A+ +A
Sbjct: 213 GLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERA 272

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
               AK    I+  L FC+  S  V    P  + V+
Sbjct: 273 ----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
 gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/134 (18%), Positives = 61/134 (45%)

Query: 50  SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
           +EF  +    +LG +     +   R     E  FF++VI +  + GG LS+ +  + + +
Sbjct: 28  NEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGI 87

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
            +   +K +   ++ + + +  ++  +P   +  +Y+  P  +  L +   G  ++    
Sbjct: 88  TESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIV 147

Query: 170 AFMLIGIMVMRLMI 183
              ++GI ++R MI
Sbjct: 148 ISEILGIFIIRNMI 161


>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
 gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR    +  F   L I+   + AG  + +A+   +    + +  +   V E + +  SL
Sbjct: 37  KKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKRSL 96

Query: 66  S------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           S      E++S+      + ++  FS +  V  + GG+L + +   S I+RD+  +  ++
Sbjct: 97  SMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITEEI 156

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             L+   +    I+  +PF +   +  +SP +  +L +   G  ++       L+ I + 
Sbjct: 157 ITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIYLS 216

Query: 180 RLMI 183
           + +I
Sbjct: 217 QKII 220


>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           +R  +       ALD++   V AG    DA  V V +S+D P+  EF RV+    +G S 
Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGF-DAALVQVARSTDGPISGEFARVLSEVQIGKSR 209

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE+ + +   + L +V  F + I    +LG  ++  L   +  +R  +  +A+ +A  + 
Sbjct: 210 SEAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVT 269

Query: 126 AKASAWIIGSLPFCV--STLVYFTSPGYMNVLINDPRGHML 164
            K    I+  L  C+  +  V    PG + ++     G++L
Sbjct: 270 VK----ILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306


>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
 gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
          Length = 318

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I+ R    L  FP+ALD++V  V AGL + D     VGQ    +  E    +   +
Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSL-DVAITRVGQELQLMHRELSEELRALY 212

Query: 61  LGLSLSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           L L    S  + +R     + L+EV  F  ++    + G ++ +AL   +  LR R++++
Sbjct: 213 LELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQ 272

Query: 117 AKVQA 121
           A   A
Sbjct: 273 ATEMA 277


>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281

Query: 118 KVQALSMEAK 127
           + +A ++  K
Sbjct: 282 EEKANTLPTK 291


>gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
 gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
          Length = 327

 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92
           V D+V  +       ++ E  +       G S++ES   + +  P QE+ FF  ++ V  
Sbjct: 171 VVDSVEEVKPLVHSSIKEELNKATIKLQQGKSVNESFMSLDKKYPYQELKFFHEMLDVAD 230

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEA----KASAWIIGSLPFCVSTLVYFTS 148
           + GG   EAL +++    +RK  + ++ A +++     + SA  + ++PF     V    
Sbjct: 231 KNGGRNIEALESIAVDFEERKVKQMRLYAETIQGTKAFRNSALTVLAIPFIFKFFV---- 286

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           P    +L++ P G ++    A  +L   + ++ + ++D
Sbjct: 287 PDAYGMLMSTPLGSIVFVSIACVVLYCYIRIQKLADWD 324


>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 52/114 (45%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+   E+ + + R 
Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 213

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 214 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 267


>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
 gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
          Length = 334

 Score = 42.4 bits (98), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++   +R  +     P+ALD+++  +  G+P+  A+  +  +   S   +  EF  +I 
Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFE-IIR 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 S+++++ +  + +   +V+  S +IS   +LG N+S AL + +  +R +   +A
Sbjct: 201 RHADANSMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYM---NVLINDPR 160
           +  +    +K S  ++  + FC++  +Y  F  P  +   N LI + R
Sbjct: 261 EENS----SKTSIKLLFPIIFCMAPPIYILFFGPAVLELRNFLIREHR 304


>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
 gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 14/162 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +K R  K  +DFP+ALD++   V AGL +  A+  +  +   SS+ V SE   ++     
Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLLEMRS 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +   ++  +     ++++  F  ++    + G ++SE+L    R+L D    + +++A
Sbjct: 221 GFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMRA 276

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
               AK +  ++  L FC+        P  M VL+     H+
Sbjct: 277 EERAAKIALKLLFPLIFCI-------FPALMLVLLGPAMIHV 311


>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 320

 Score = 42.4 bits (98), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLG 62
           +KR    L  FP+ALD++V  V AG+ +  A++ +  +S      +  E          G
Sbjct: 164 QKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAG 223

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   +++  +     LQ++   +T++    + G ++S+AL   S  +R  +  +A+ +A 
Sbjct: 224 MPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAA 283

Query: 123 SMEAK 127
            +  K
Sbjct: 284 KIPVK 288


>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 291

 Score = 42.4 bits (98), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 52/114 (45%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+   E+ + + R 
Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMGRREAFTELRRR 204

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 205 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 258


>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 315

 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIETQHL 61
           IK R  +  + FP++LD+I+  V AGL +  A+  +V   +++ PV + E+  +      
Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRA 214

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLS  +++  +     + +VS    ++    + G +++++L   S +LR +++M A+ +A
Sbjct: 215 GLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
               AK    ++  L FC+   +Y
Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294


>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
           HTCC2601]
 gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
          Length = 323

 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +++R  +  + FP+ALD+++  V AG  +  ++  +  +   S   +  EF  +      
Sbjct: 165 VEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKA 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  ++ M     + +VS F TV++  S  G ++++AL   +  +RD++ M+A+ +A
Sbjct: 225 GKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKA 284

Query: 122 LSMEAK 127
             +  K
Sbjct: 285 NKLPTK 290


>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 325

 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +++R    ++ FP+ LD+++  V AG  +  A+  +  +   S   +  EF  V      
Sbjct: 169 VEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEMKA 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G      +        +Q+VS F TV+   +  G ++++AL   S  +RD++ M+A+  A
Sbjct: 229 GKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEEAA 288

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYM 152
             +  K + A ++ ++P  +  LV  ++ G M
Sbjct: 289 NKLPTKMTLATMMLTVPPLLVILVGPSAKGIM 320


>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 295

 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S  ++ + + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMSRRQAFAELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + + L +L++ +R      A+ +A     KA+
Sbjct: 209 NDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKAT 262


>gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
          Length = 90

 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 98  LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           ++E    +S ++R+R  ++ K+ AL+ + K   WI+ S+P  +  ++    P  M  +++
Sbjct: 1   MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60

Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              G++L+ V A   ++GI+++R ++N D+
Sbjct: 61  HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90


>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
 gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
          Length = 246

 Score = 42.0 bits (97), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 43  QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           Q    ++ E + +I    +   +   +        L +V  F+ V +V  + GGNL + +
Sbjct: 102 QGRSYIQGEIKMIIAGLEMNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMM 161

Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
             + + + +R  ++ ++  +    +    I+ ++PF +   +   +PGYMN L  +    
Sbjct: 162 KKMVQTIEERLEVEDEIDTMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGN---- 217

Query: 163 MLLGVAAAFMLIGIMVMRLMI 183
            + G+AA  M + ++V+ LM+
Sbjct: 218 -VFGIAA--MSVCLIVIFLMV 235


>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD+++  V AG  +  ++  +  +   S   +  EF  V      G    + +  M
Sbjct: 179 FPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDM 238

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AW 131
                + +VS F TV+   SQ G +++EAL   +  +RD++ M+A+  A  +  K + A 
Sbjct: 239 GTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298

Query: 132 IIGSLPFCVSTLVYFTSPGYMNV 154
           ++ ++P  +  LV  ++ G M++
Sbjct: 299 MMLTVPPLLIILVGPSAKGIMDL 321


>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Cupriavidus metallidurans CH34]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
           +  R     ++FP+ +D++   V AGL +  A+  +  + +   PV + E + ++     
Sbjct: 161 VTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRS 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A+ QA
Sbjct: 221 GFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQA 280

Query: 122 LSMEAK 127
             +  K
Sbjct: 281 AKIALK 286


>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 323

 Score = 42.0 bits (97), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60
           I++R       FP+ALD+++  V AG  +  A+ V VG+    S   +  EF  V     
Sbjct: 168 IEERKQAITRAFPDALDMMLVCVEAGQSLDQAI-VRVGKELRASYPELAEEFEIVAYEMK 226

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A+  
Sbjct: 227 AGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEA 286

Query: 121 ALSMEAKASAWIIG-SLPFCVSTLVYFTSPGYMNV 154
           A  +  K +   +G ++P  ++ L+  +  G  N+
Sbjct: 287 ANKLPTKMTLATMGLTVPPLLAILIAPSVQGLGNI 321


>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
          Length = 281

 Score = 42.0 bits (97), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           +IK +  + + D P  +D++  +V+ G+ +  A   V++   + +  +     R+I    
Sbjct: 126 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  + +
Sbjct: 186 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M VL N
Sbjct: 245 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 279


>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score = 42.0 bits (97), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
           +K R  K  +DFP+ALD++   V AGL + DA  + V +     S+ V SE   ++    
Sbjct: 161 VKVRQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +   ++  +     ++++  F  ++    + G ++SE+L    R+L D    + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275

Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           A    AK +  ++  L FC+  + +V    P  ++V
Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311


>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
 gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           I  R    ++DFP+ALD++   + AGL +   +  +  +    S  V  E   ++     
Sbjct: 157 IASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLLEMRS 216

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S   ++  +      +++  FS ++    + G ++  +L  LS  LR ++ M+A+ +A
Sbjct: 217 GFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERA 276

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
               AK +  ++  L FC+  + L     P ++++
Sbjct: 277 ----AKIALKLLFPLIFCIFPALLTVLLGPAFIHI 307


>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
 gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           +IK +  + + D P  +D++  +V+ G+ +  A   V++   + +  +     R+I    
Sbjct: 135 IIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIRRAE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  + +
Sbjct: 195 LT-SLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVMEEK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M VL N
Sbjct: 254 LGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVLPN 288


>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAK 127
           + +A ++  K
Sbjct: 285 EEKANTLPTK 294


>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 50/98 (51%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  + L+  P+ALD++  +  AGL    A+  I  + ++ +  EF RV+    +G+ 
Sbjct: 155 IRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMSMGVP 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
             ++++ M     + +++ F + +     LG ++   L
Sbjct: 215 RRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVL 252


>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
 gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
          Length = 296

 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLG 62
           I+KR    L +F   +D+    + +GL    A   I+   +    +  E  +++    LG
Sbjct: 139 IQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNEVKLG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            S  E++ R+     +QE+  F  +I    +LG +L + L N S  LR R+  KA+
Sbjct: 199 YSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254


>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 326

 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAK 127
           + +A ++  K
Sbjct: 285 EEKANTLPTK 294


>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           + +R  +    FP+ALD+++  V AG  +   +  +  +   S   +  EF  V      
Sbjct: 150 VAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEMKA 209

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+  A
Sbjct: 210 GKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEEAA 269

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
             +  K + A ++ ++P     L+   +P  MN+
Sbjct: 270 NKLPTKMTLATMMLTVP---PLLIILVAPSVMNI 300


>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
 gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-----RRVI 56
           K +I  R  +  +D P  +DI+   V++G+ + + +  +  ++++ +  +      R ++
Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYL-AENTETINPDISVLLARTIM 182

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           + +  G+S  E++  +   +P QE+   ++ +    + G ++   L +LSR +R+ + + 
Sbjct: 183 KMEVSGMS--EALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLA 240

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +  S+ AK S  +I  + F +  LV    PG + ++
Sbjct: 241 IDEKISSLAAKMSLPMIICIMFPI--LVLVAGPGVIRIV 277


>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 296

 Score = 41.6 bits (96), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 4   LIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           L++   A+  DD     P+ LD++   V AGL    A+  +  + + P   E R  +   
Sbjct: 134 LLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQM 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G+   E+  ++ R    ++VS F + +    +LG  + + L  ++  +R      A+ 
Sbjct: 194 DMGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARR 253

Query: 120 QALSMEAKAS 129
           +A     KA+
Sbjct: 254 KAAKAVPKAT 263


>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
           denitrificans OCh 114]
 gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter denitrificans OCh 114]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +  R  +    FP++LD+++  V AG  +   +  +  +   S   +  EF  V      
Sbjct: 195 VDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 254

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A+  A
Sbjct: 255 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAA 314

Query: 122 LSMEAKAS 129
             +  K +
Sbjct: 315 NKLPTKMT 322


>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
 gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++L  +R  +    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L ++   ++ IS   +LG  ++  L   S   RD++  +A
Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 280 EEQAAKLAVK 289


>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  L + R  + +   P  LD +  ++ AGL +S A+A  V +  D P++ EF +VI   
Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---ANLSRILR----DR 112
             G+S +++   M   + + E++   + ++   + G +L   L   A+  R+ R    ++
Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250

Query: 113 KNMKAKVQ 120
           K M+A ++
Sbjct: 251 KAMEAPIK 258


>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P+ +D++  SV AGL    A+  +  +    +  EF ++++   +G    E
Sbjct: 157 RKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIKIGRPRLE 216

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  + R + + ++S F+  + +  QLG +    + N+ R+  D+  MK +  A  M  K
Sbjct: 217 ALRDLSRRLDVDDLSAFAGAVILADQLGIS----IGNILRVQSDQIRMKRRQAAEEMAMK 272

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           A   ++  +P     +V F  P    VL+    G  ++ ++ AF
Sbjct: 273 APVKML--IP-----MVLFIFPAIFVVLL----GPAVIQISKAF 305


>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLS 64
           KKR    L   P  LD+I    +AGL ++ A+A  V +     +  EF R++     G+S
Sbjct: 143 KKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREMRTGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++++ M   +  + +    + ++    LG +L++ L+ +S   R  +   A  + L+M
Sbjct: 203 RMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHA--EKLAM 260

Query: 125 EA 126
           EA
Sbjct: 261 EA 262


>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 299

 Score = 41.6 bits (96), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
           ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+   E Q   LS  ES++
Sbjct: 85  NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +      + +   + ++    + GG+LS++L  L++ L D K  K ++ +++    A  
Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIG 202

Query: 131 WII--GSLP 137
           +II  G +P
Sbjct: 203 FIILCGVIP 211


>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily  protein
           [Roseovarius nubinhibens ISM]
          Length = 323

 Score = 41.6 bits (96), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           D FP++LD+++  V AG  +  ++  +   +  S   +  E++ V +    G   +  ++
Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231

Query: 71  RMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            M     +Q++S F TV+ VQSQ  G ++ +AL   +  +RD++ M+A+ +A  +  K +
Sbjct: 232 EMGDRCGVQDISSFVTVL-VQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMT 290

Query: 130 AWIIG 134
              +G
Sbjct: 291 LCTMG 295


>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 320

 Score = 41.6 bits (96), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 70/132 (53%), Gaps = 3/132 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
           +++R  ++ + FP+ +D+++    AG+ +   +  +  +   + P  S+  +++  +   
Sbjct: 167 VRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A+ +A
Sbjct: 227 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEKA 286

Query: 122 LSMEAKASAWII 133
            ++ AK S  ++
Sbjct: 287 HALPAKMSVPVV 298


>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
 gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 66/138 (47%)

Query: 45  SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
           S+ V  E+RR++E     + L   ++R        +V + +T++ +Q ++GG++++ L  
Sbjct: 152 SEIVLEEYRRIVELLRAQVPLEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDL 211

Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
            +  +  R+    + +A   +  A   ++  +PF     +Y  +P + + L     G  L
Sbjct: 212 AASSILRRRQSLRRQKAAMAQIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFL 271

Query: 165 LGVAAAFMLIGIMVMRLM 182
           +  + A +LIG   +R +
Sbjct: 272 ILGSLASILIGGEAIRFV 289


>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
           voltae A3]
 gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
          Length = 294

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLG 62
           L + +  KF  + P AL I+V S+ +G  V +++  I+      V   F ++I       
Sbjct: 73  LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +S+  +   +  +       +I    + GGNL+E+L  L++ L D  N+K   Q L
Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKN--QLL 190

Query: 123 SMEAKASAWIIGSLPFCV 140
           S+ +   +  +G +  C+
Sbjct: 191 SVASNGLS--VGIIILCI 206


>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRY 75
           P  L ++  +V AG+ + +A  V+ G    P  + FRRV+    + GL++ E++ R+   
Sbjct: 42  PQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEALWRVASE 101

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
           +P      F+ +++  ++ G  L E L   +R
Sbjct: 102 LPSPNFRRFALIVAEGARSGARLGEVLGVAAR 133


>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 295

 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 57/129 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R        P+ LD++   V AGL    A+  +  + S P   E R  +    
Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  E+  ++ +    ++VS F + +    +LG  + + L  ++  +R      A+ +
Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253

Query: 121 ALSMEAKAS 129
           A     KA+
Sbjct: 254 AAKAVPKAT 262


>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 285

 Score = 41.2 bits (95), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKRTA     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G     S+ ++   +           + +  ++GG +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213

Query: 120 QA 121
           +A
Sbjct: 214 EA 215


>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 8/153 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60
           + KR      +    L+ IV  V AG  V  A+         Q   P+  E  R+I+   
Sbjct: 47  VDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLE 106

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G S  +S     +   +QEVS F+T + +  + GG + + AL +LSR L +++    + 
Sbjct: 107 GGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRT 166

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           +    E  +S  +   +   +  +V   +P +M
Sbjct: 167 RG---EQASSKLVFPMMVIFMIVIVLVGTPAFM 196


>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
           [Shewanella sediminis HAW-EB3]
 gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
           transmembrane protein [Shewanella sediminis HAW-EB3]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++ +  +R       FP+ALD++V    AGL +  A   VA  +  S   + SE   V  
Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  +++       L+++   ++ IS   +LG  ++E L   S   R+++  +A
Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278

Query: 118 KVQALSMEAK 127
           + QA  +  K
Sbjct: 279 EEQAAKLAVK 288


>gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA
           2018]
          Length = 396

 Score = 41.2 bits (95), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 29  AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           AG  + ++++++     D  +   RR+I+    G+    SI + V+Y       FF +++
Sbjct: 74  AGFNICESLSIMY----DKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPYFFKSML 129

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144
            +  +  GNLSE   NL    +D+   + K++ A +  A   A+ I  L F VS ++
Sbjct: 130 FIGEE-SGNLSEVFRNLGEYYKDQWKTEEKIKNATTYPAIVFAFTIIILVFLVSKVI 185


>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
 gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIET 58
           K+++  R  K   D P  +D++   V++GL +  ++  +   VG  +D       R+++ 
Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKK 185

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +   L   ++ + + +P +EVS     +    + G ++ E L  LS  +R+ + +K +
Sbjct: 186 IEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTE 244

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                + AK S  ++  L F    ++   +PG M V+
Sbjct: 245 EIIGKLSAKMSIPLV--LFFMFPVVIIIAAPGIMRVM 279


>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 286

 Score = 41.2 bits (95), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64
           +K+ A+F  + P  LD+   +++  LPV+ A+  I  +S D + S E  R +    LG S
Sbjct: 135 QKKKAQFESEIPRFLDLFQTAIKINLPVATAIK-ITAESIDGILSEELLRALVVTELGTS 193

Query: 65  -LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +S+  + +   +   S F   I    Q G +++E++   SR ++    + AK QA  
Sbjct: 194 NWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQA-- 251

Query: 124 MEAKASAWII 133
             AK ++ I+
Sbjct: 252 --AKTTSLIL 259


>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
 gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
          Length = 326

 Score = 41.2 bits (95), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAK 127
           + +A ++  K
Sbjct: 285 EEKANTLPTK 294


>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
 gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           ++ L  +RT +     P  LDII  ++ AG  ++ A+   V +  + P+  E RRV+   
Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  +   + +  +S +   I    + G +L   L   +   R+ + M+A+ 
Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259

Query: 120 QALSMEAK 127
            AL    K
Sbjct: 260 MALKAPVK 267


>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 330

 Score = 41.2 bits (95), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 2   KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54
           K+ I KR A+  ++    FP+ALD+++  V AG  +  A+  +  +   S   +  EF  
Sbjct: 156 KYWINKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFEL 215

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G   +  +  M     + +++ F TV+   +  G ++++AL   +  +RD++ 
Sbjct: 216 VSHEIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRV 275

Query: 115 MKAKVQALSMEAK 127
           M+A+ +A  +  K
Sbjct: 276 MRAEEKANKLPTK 288


>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
 gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67
           +F   L  +  S+ AG  + +AV      + D +R+   + + V+E +      GL +++
Sbjct: 80  EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135

Query: 68  SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119
            I  ++  M L+    E S F+ V+ +  + GGNL     +++ ++++ ++ ++ +   V
Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
            A  ME K    I+  +PF +   V   +PGY  VL + P G +L
Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236


>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
 gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
          Length = 259

 Score = 41.2 bits (95), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQ----HLGLSLSE 67
           +F   L  +  S+ AG  + +AV      + D +R+   + + V+E +      GL +++
Sbjct: 80  EFKEMLLSVYNSLSAGYSLENAVRA----ARDDMRAVNGDKKSVLEQELSLVCAGLEVNQ 135

Query: 68  SISRMVRYMPLQ----EVSFFSTVISVQSQLGGNL----SEALANLSRILRDRKNMKAKV 119
            I  ++  M L+    E S F+ V+ +  + GGNL     +++ ++++ ++ ++ +   V
Sbjct: 136 PIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTMV 195

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
            A  ME K    I+  +PF +   V   +PGY  VL + P G +L
Sbjct: 196 SAKRMEQK----IMSVMPFFILLYVRLMNPGYFQVLYDSPGGVIL 236


>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 72/160 (45%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           M  L++ R  K  +D P+ALD++   V AGL +  A   V   +G  S  ++ EF  V+ 
Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +  A  +  K            +  L++F  P  + VL+ 
Sbjct: 270 EELAAEIALK-----------LLFPLMFFIFPTLLAVLVG 298


>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +KKR  + L +FP   +++  S+ AG    DA+  +   ++  +  E R  +    
Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            G SL +++  M R   +Q +  F   +++    G  LSE L   +  +R+    K
Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRK 272


>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CMR15]
          Length = 315

 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHL 61
           IK R  +  + FP++LD+I+  V AGL +  A+  +V +  ++ PV + E+  +      
Sbjct: 155 IKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRA 214

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL   +++  +     + +VS    ++    + G +++++L   S +LR +++M A+ +A
Sbjct: 215 GLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERA 274

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
               AK    ++  L FC+   +Y
Sbjct: 275 ----AKIGTKVLFPLIFCIFPSLY 294


>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 324

 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 6   KKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
           K RT + L  D  P+ALD++V  V AG+ +  A+  +  +   SS  +  E   ++    
Sbjct: 165 KVRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELR 224

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G + SES+  +   + L++V+   T+I      G +++  L   S  +R  +  +A+  
Sbjct: 225 AGKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEI 284

Query: 121 ALSMEAKASAWIIGSLPFCV 140
           A  M  K    ++  L FC+
Sbjct: 285 AAKMPVK----LLFPLVFCI 300


>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 286

 Score = 40.8 bits (94), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +  +VRAGL + +AVA +  +  D +R  FRR  +   +  + + S+  + R 
Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120
           +           + +  ++GG +L   L  LS  LR+   ++A+++
Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELE 215


>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 313

 Score = 40.8 bits (94), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R  K L  FP   +++  +V AG   + A+  I       +  EF + +   H G  
Sbjct: 162 INRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIHAGTP 221

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMK-AKVQ 120
           + +++  M   M +  ++ F   I V ++ G  L++ L + ++ +RD   R+ M+ A  +
Sbjct: 222 MVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRDASKRELMEVAGKR 281

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            +SM       + G LP    T+V+   PG
Sbjct: 282 EISMLVPV---VFGILPL---TIVFAVFPG 305


>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 326

 Score = 40.8 bits (94), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIE 57
           +  +  R  +    FP+ALD+++  V AG  + D   V VG+    S   +  EF  V  
Sbjct: 165 RRRVDSRKEEITRGFPDALDMMLVCVEAGQSL-DQCIVRVGRELRASYPALAEEFEMVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIG 134
           +  A  +  K +   +G
Sbjct: 284 EEAANKLPTKMTLATMG 300


>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I++R  +     P+ALD++  SV AGL    A+  +  QS+  +  EF  +++  H+G  
Sbjct: 157 IRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECHMGKP 216

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNL 98
             E++  M   + + ++S F   I +   LG   GN+
Sbjct: 217 RREALRDMADRVDVDDLSTFCGSIILADTLGISIGNI 253


>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
           +K R  K  +DFP+ALD++   V AGL + DA  + V +     S+ V SE   ++    
Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +   ++  +     ++++  F  ++    + G ++SE+L    R+L D    + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           A    AK +  ++  L FC+        P  M VL+     H+
Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311


>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 273

 Score = 40.8 bits (94), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR  +     P+ LD++  +V AGL    A+A +       + SEF+  +    LG S 
Sbjct: 118 RKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTSR 177

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALS 123
            ++ + +      + +  F T +    +LG  LS+ L  LS  +R  D + ++ K Q L+
Sbjct: 178 RDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHLN 237


>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 9/129 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
           ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+   E Q   LS  ES++
Sbjct: 85  NNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK--LSFEESMT 142

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +      + +   + ++    + GG+L+++L  L++ L D K  K ++ +++    AS 
Sbjct: 143 IVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVT----ASG 198

Query: 131 WIIGSLPFC 139
             IG +  C
Sbjct: 199 LAIGFIILC 207


>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
           +K R  K  +DFP+ALD++   V AGL + DA  + V +     S+ V SE   ++    
Sbjct: 161 VKVRQRKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSEVVASELDLLLLEMR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +   ++  +     ++++  F  ++    + G ++SE+L    R+L D    + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDMLRTRRRMR 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           A    AK +  ++  L FC+        P  M VL+     H+
Sbjct: 276 AEERAAKIALKLLFPLIFCI-------FPALMMVLLGPAMIHV 311


>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 291

 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + T++ L    P+ +++I  +V AG PV  A+   V   S P+    R  +   H G SL
Sbjct: 142 RATSRILTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSL 201

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
             ++S +      Q VS F+  +    + GG L++ L N
Sbjct: 202 PAALSDLSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHN 240


>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2083]
 gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           I  R  +    FP++LD+++  V AG  +  ++  +  +   S P +  E+  V +    
Sbjct: 167 IDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G      ++ M     +Q+V+ F TV+   +  G +++EAL   +  +RD++ M+A+ +A
Sbjct: 227 GKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 286

Query: 122 LSMEAKAS 129
             +  K +
Sbjct: 287 NKLPTKMT 294


>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
 gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +  R  +    FP++LD+++  V AG  +   +  +  +   S   +  EF  V      
Sbjct: 167 VDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A+  A
Sbjct: 227 GKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAA 286

Query: 122 LSMEAKAS 129
             +  K +
Sbjct: 287 NKLPTKMT 294


>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 304

 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAV---AVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++TA F    P+ LD++   V AGL +  A+   A    + + P+ +EF  VI     G 
Sbjct: 151 RKTAIF-HALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGR 209

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             SE++  +     L ++    +++    +LG +L + L   S  LR ++   A+ +A  
Sbjct: 210 PRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERA-- 267

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
             AK +  ++  L FCV        P +M VL+
Sbjct: 268 --AKTAVKMLFPLTFCV-------FPAFMVVLL 291


>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           ++K +  K + D P  +D++  +V+ G+ +  A   VA+   + +  +     R+I    
Sbjct: 129 ILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L   LS+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 189 LT-GLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIEEK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M V  N
Sbjct: 248 LGTLSAKMSIPLILFIMFPIIILIL--APGIMRVFPN 282


>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
 gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPV-RSEFRRVIETQHLG 62
           K+R      D P  +D++  SV AGL    A+  IV ++  +D V   EF  V++   +G
Sbjct: 104 KRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKIG 163

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS---RILRDRKNMKAKV 119
            S ++++  M   + + E++ F  V+      G ++S+ L + S   R+ R  +  KA  
Sbjct: 164 SSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAGA 223

Query: 120 QA 121
           QA
Sbjct: 224 QA 225


>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           +++R       FP+ LD+++  V AG  +  A+  +  +  SS P +  EF  V      
Sbjct: 169 VEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKA 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   ++ +        +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+  A
Sbjct: 229 GKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAA 288

Query: 122 LSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMN 153
             +  K + A ++ ++P  +  LV  ++ G M 
Sbjct: 289 NKLPTKMTLATMMLTVPPLLIILVGPSAKGIME 321


>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
 gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
          Length = 295

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + R 
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + + +Q+GGN L   L +L  +LR  +  + +V A        A +  
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
           + P+ +  L+  + PG + V  + P G M+L V A    L  +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283


>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLS 64
           + +  KF  + P AL +++ S+ +G  V DA+  ++      V   F +++       LS
Sbjct: 77  ESKIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLS 136

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +SI  +   +  +       +I    + GG L+E L  L++ L D +N+K ++ +++ 
Sbjct: 137 FEDSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTA 196

Query: 125 EAKASAWII--GSLPFCVSTLVYFTSPGYMNVL 155
              A   II  G +P     +      GY+N +
Sbjct: 197 NGLAVGLIIICGVIPATAGII-----GGYLNAI 224


>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
 gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
          Length = 238

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++   +G 
Sbjct: 83  VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+
Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 197


>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 4/168 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + R 
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKRE 177

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + + +Q+GGN L   L +L  +LR  +  + +V A        A +  
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
           + P+ +  L+  + PG + V  + P G M+L V A    L  +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283


>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 293

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRY 75
           P  LD +  +V AGL ++ A+   V +  D  +RSEF  V+     GL+ ++++ R    
Sbjct: 151 PVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALRRFDER 210

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++E++ F   +    ++G  L+  L   S   R  +  +A  + L+MEA
Sbjct: 211 QDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRA--EKLAMEA 259


>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
 gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
          Length = 161

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 49/95 (51%)

Query: 5  IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
          I +R A+ L +FP+  +++  +VRAG   + A+  +   S   +  EF R++     G+ 
Sbjct: 3  ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62

Query: 65 LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
          L+E+++   R   +  +  F+  ++V  + G  L+
Sbjct: 63 LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLA 97


>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 295

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 50/114 (43%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVSRRQAFEELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + E L  ++  +R      A+ +A     KA+
Sbjct: 209 NDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262


>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
 gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
          Length = 292

 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  + G+   P   E R  ++   +G+S  ++   + R 
Sbjct: 145 LPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVSRRQAFDELRRR 204

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114
              ++V+ F T +    +LG  + E L  ++  +R  D +N
Sbjct: 205 NDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQN 245


>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
 gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
          Length = 316

 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           ++ R    ++ FP++LD+++  V AG  +  ++  +  +  +  P +  EF  V +    
Sbjct: 161 VEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKA 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  +  M     + ++S F TV+   +Q G ++S+AL   +  +RD++ M+A+  A
Sbjct: 221 GKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAA 280

Query: 122 LSMEAK 127
             +  K
Sbjct: 281 NKLPTK 286


>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 296

 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++   +G 
Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+
Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAE 255


>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
 gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 351

 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  I   + AG+ +++A+  +      P+  EF  VI     
Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           G S  E++ +    M  + VS     I    + GGNL+E L  L+
Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLA 269


>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A    +G+ ++ +R +   + E  H
Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAA----LGKVTEEIRIKSEALAEELH 192

Query: 61  L-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                   G +  +++  +     + E+  F+ +++   + G ++ E+L   S  LR ++
Sbjct: 193 WTNLEMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKR 252

Query: 114 NMKAKVQALSMEAK 127
            M+A+  A  +  K
Sbjct: 253 QMRAEELAAKIPTK 266


>gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
 gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
          Length = 401

 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 27  VRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAG+PV +A  ++  Q+ S P++    +V E    G++ S++  +  +  PL  V+   
Sbjct: 75  IRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPLLFVNMMR 134

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST-LV 144
                  +  GN+ + L  L+  L  + N+K K+Q+    A     I+  L   V   L+
Sbjct: 135 A-----GEATGNVDDTLDRLASTLEKQYNIKKKIQS----AMTYPAILSLLTLVVGMFLM 185

Query: 145 YFTSPGYMN 153
            F  P +M+
Sbjct: 186 VFIVPTFMD 194


>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
 gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
          Length = 191

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQHLGLSLSES 68
           F N L  ++ S++AG  ++++  + + +        ++P+  + RR+I+   L ++L + 
Sbjct: 49  FQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIALEQL 108

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                    L+E   F+ VI +    GGN+ E L    + L+ + + + +++ L
Sbjct: 109 FMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL 162


>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 6/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           +++R  K    FP++LD+++  V AG  +  ++  +  +  +S P +  EF  V +    
Sbjct: 164 VEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKA 223

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    + +  M     +Q++S F TV+ +QSQ  G ++++AL   +  +RD++ M+A+  
Sbjct: 224 GKDKEKVLRDMGTRCGVQDISSFVTVM-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEA 282

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           A  +  K + A ++ ++P  +  LV  +  G +N+
Sbjct: 283 ANKLPVKMTLATMMLTVPPLLIILVGPSVQGILNM 317


>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
 gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 84/193 (43%), Gaps = 14/193 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIET 58
           I+KR  +   +F + +  +  S+ AG    +A      +       S  +  E + VI  
Sbjct: 113 IEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIR- 171

Query: 59  QHLGLSLSESISRMVRYMP----LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
              GL + E I  +++ M     ++E+S F+ V+ V  + GGN+   +   +  +  +  
Sbjct: 172 ---GLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKME 228

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++Q +    K    I+  +PF +   +   +  Y+++L  +  G +++ +  A  ++
Sbjct: 229 VELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSIL 288

Query: 175 GIMVMRLMINFDV 187
                R MI   V
Sbjct: 289 SAAWSRKMIRIGV 301


>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 3/128 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HL 61
           ++++  ++ + FP+ +D+++    AG+ +   +  +  +   + P  S+  +++  +   
Sbjct: 151 VREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELRA 210

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A+ +A
Sbjct: 211 GRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKA 270

Query: 122 LSMEAKAS 129
            ++ AK S
Sbjct: 271 HALPAKMS 278


>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 285

 Score = 39.7 bits (91), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKR+A     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G     S++++   +           + +  ++GG +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213

Query: 120 QA 121
           +A
Sbjct: 214 EA 215


>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 270

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVS-------DAVAVIVGQSSDPVRSEFRRV 55
           +L+++R       F  AL  +  S+ AG  V        D + ++     + V  E   +
Sbjct: 80  YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G  + E++    R   ++++  F+ V +   + GG+L E +   S ++ ++  +
Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             ++  +  + +  A  + + P      + FTSP YM  L +   G ++ GVA     I 
Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258

Query: 176 IMVMRLMINFDV 187
             +M  +I+  V
Sbjct: 259 AWLMLKIIDIRV 270


>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
 gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 290

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQH 60
           ++KR  + L + P  L  ++  V AG  V  A+   V      +  P+  E R+ +    
Sbjct: 137 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTVAEWE 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114
            G S  ++   + +   +QE++ F+T + +  + GG +   AL  LS+ L  ++ 
Sbjct: 197 SGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRT 251


>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGL---PVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           K R  +    FP+ L++IV +  AGL   P    VA  +  S   +  E  +++    + 
Sbjct: 165 KNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMT 224

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                + ++M   +PL E+  F+  +    + G   S A+  L  I+  R N     + +
Sbjct: 225 NDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTL--IIEQRGN-----RLM 277

Query: 123 SMEAKASAW-IIGSLP--FCV--STLVYFTSPGYMNVLIN 157
           ++E KA+   ++ +LP  FC+  +  V    P  ++VL N
Sbjct: 278 AIEEKAARLPVLMTLPLIFCIMPAVFVVLVGPAVLSVLDN 317


>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 53/125 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257

Query: 125 EAKAS 129
             KA+
Sbjct: 258 VPKAT 262


>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
 gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ I+KR+ K     P+ALD+ V    AGL + DA    V +   P   E         
Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSL-DAALARVSREIGPAAPEL-----ADE 213

Query: 61  LGLSL---------SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           LGL+           E++  + R +   +V      +    + G  L++AL  L+   RD
Sbjct: 214 LGLTAVELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRD 273

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLIN 157
            + MKA+ +A  + A  +  +I    F +  L V    P  + VL  
Sbjct: 274 TRMMKAEEKAARLPATLTVPMIA---FILPPLFVVLIGPAIVQVLTT 317


>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 57/127 (44%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             +++R A      P+ LD++   V AGL    A+  +  +   P   E R  +    +G
Sbjct: 141 QAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  ++   + R    ++V+ F + +    +LG  ++E L  ++  +R     +A+ +A 
Sbjct: 201 VSRRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAA 260

Query: 123 SMEAKAS 129
               KA+
Sbjct: 261 KTIPKAT 267


>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 295

 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 54/125 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + + L  ++  +R      A+ +A   
Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257

Query: 125 EAKAS 129
             KA+
Sbjct: 258 VPKAT 262


>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
 gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
          Length = 324

 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 11/156 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
           +  R  K  +DFP+ALD++   V AGL + DA  + V +     SD V  E   ++    
Sbjct: 161 VAARQQKIFEDFPDALDLLTVCVEAGLGL-DAALMKVSEELRFRSDVVAGELDLLLLEMR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +   ++  +     ++++  F  ++    + G ++SE+L    R+L D    + +++
Sbjct: 220 SGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESL----RVLSDLLRTRRRMR 275

Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           A    AK +  ++  L FC+  + +V    P  ++V
Sbjct: 276 AEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHV 311


>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
 gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
          Length = 617

 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +++  F N L  I  S   G+P+  A++++    + P+R E R++      GL LS 
Sbjct: 409 RYLRYIPIFFNRLATINES---GVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSR 465

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           +  R    + + +V+   T+++   +  GNL+E L
Sbjct: 466 AFVRFANRIRVFDVTRVVTMLNEAMKTTGNLTEVL 500


>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
           QCD-76w55]
          Length = 317

 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
           K L  KR  K      + + II+   +    +S ++   +   Q S+P+ SE ++ +   
Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLS--EALANLSRILRDRKNMKA 117
            LG+ + E +S + R    + +  FS    V S L    S  + L        D + +K 
Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY---FTSPGYMNVLINDPRGHM-LLGVAAAFML 173
            ++   M     ++I   + F +  L+    F S GY++ +IN+  G M L G+  + +L
Sbjct: 247 DLRKEIMGPVRESYI---MVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILL 303


>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
 gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score = 39.3 bits (90), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHL 61
           + +  KF  + P AL ++  S+ +G  V++A+  ++    + V  EF +    +IE ++ 
Sbjct: 76  EGKIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYS 135

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +I+     M  +++     +I  + Q GG L+  L  L++ L D  N+K ++  
Sbjct: 136 FEDAMTTITENSDSMVFRQIG--RLIIENRKQ-GGELASTLRTLAKTLEDLMNIKQQL-- 190

Query: 122 LSMEAKASAWIIGSLPFC 139
             +   A+  ++G +  C
Sbjct: 191 --LSTTANGLVVGLVILC 206


>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESIS 70
           ++ P AL I++ ++ +G  +++A+  +V  +   V + F++V+   E Q +  S  E+++
Sbjct: 87  NNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQKI--SFEEAMT 144

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +      + +   + ++    + GGNL+++L  L++ L D +  K ++ +++    A  
Sbjct: 145 IVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVG 204

Query: 131 WII--GSLP 137
           +II  G +P
Sbjct: 205 FIILCGVIP 213


>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
 gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 285

 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +RTA   + +P+ +D +  ++RAG+ + +A+  +  +  +P+R  F R          L 
Sbjct: 100 RRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYRASGQLH 159

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125
            S++ + + +           + V  ++GG +L + L  LS  LR+ +  +++++A    
Sbjct: 160 GSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEARQSW 219

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
              +A +  + P+ +  L+  T P  +    N P G ++L
Sbjct: 220 TVNAARLSVAAPWLILGLMA-TQPAAVQA-YNTPAGAVVL 257


>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
 gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 292

 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQ 59
           ++K++    + D P  +D++   V+ G+ ++ A+  +       + D      R + + +
Sbjct: 138 ILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRKAE 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G  L  ++  +   +P +E+  F+TV+      G ++   L  LS  +R+ + +  + 
Sbjct: 198 IIG--LPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEE 255

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           Q  ++ AK S  +I  + F +  L+   +PG M V  N
Sbjct: 256 QLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVFPN 291


>gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
 gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
          Length = 353

 Score = 38.9 bits (89), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 43/90 (47%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L  +   + AG+ +++A+  +      P+  EF  +I   H G S  ++++R    M
Sbjct: 182 PYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMHGGTSFEDALTRFEERM 241

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS 106
             + VS     I   ++ GGNL++ L  L+
Sbjct: 242 ASENVSRVVKQILRATRFGGNLADILYKLA 271


>gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 17/187 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVS--------DAVAVIVGQSSDPVRSEFRRVIE 57
           ++R A F +  P  +D  +R + AG  +         DA  V       P+    R  +E
Sbjct: 124 QQRRAIF-ESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVF-----QPLTFRLRSAVE 177

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +      L +  +R+ R   L  VS     +   ++ G ++   L  ++  LR ++ ++ 
Sbjct: 178 SGRDYTGLFDDFARLYRVPSLVLVSI---ALRTSARFGSSIRPVLQQVANSLRSQQELRR 234

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +  A + E + +A     LP  ++  +   +  Y +VL+    GH +L +A     IG++
Sbjct: 235 EFLASTAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVV 294

Query: 178 VMRLMIN 184
           ++  M+ 
Sbjct: 295 IIWRMVQ 301


>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
 gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
          Length = 318

 Score = 38.9 bits (89), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLS 64
           R    +  FP++LD+++  V +G  +  A+  +  +       +  EF  V      G  
Sbjct: 167 RQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKD 226

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
               +        + ++S F +V+   +  G  ++EAL   S  +RD++ M+A+ +A ++
Sbjct: 227 KKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTL 286

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             K +   +G++ FC+ +L+
Sbjct: 287 PVKMT---LGTMVFCLPSLL 303


>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 295

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 50/114 (43%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F T +    +LG  + E L  ++  +R      A+ +A     KA+
Sbjct: 209 NDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKAT 262


>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 303

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/130 (17%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     + E+  F+ +++   + G ++ +++   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 257 EELAAKIPTK 266


>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 331

 Score = 38.9 bits (89), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61
           I KR  +  + FP++LD+++  V AG  +  A   VA  +      +  EF  V      
Sbjct: 171 IDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIKA 230

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQ 120
           G      +  M     + +V+ F TV+ +QSQ  G ++++AL   +  +RD++ M+A+ +
Sbjct: 231 GKDKITVLKDMAERCGVGDVTSFVTVL-IQSQSFGTSIADALRVYAGEMRDKRVMRAEEK 289

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A  +  K +   +G++ F V  L+
Sbjct: 290 ANVLPTKLT---LGTMMFTVPPLL 310


>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 38.9 bits (89), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 48/106 (45%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++  ++ R 
Sbjct: 149 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQLRRR 208

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              ++VS F T +    +LG  + + L  ++  +R      A+ +A
Sbjct: 209 NDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREA 254


>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
 gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
          Length = 310

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---L 61
           I +R       FP+ +D++V  V AGL + DA    VG+       E R  I   H   L
Sbjct: 155 ISQRKQACSSGFPDMMDLMVACVEAGLSL-DASVQRVGEE-----LELRHPIIAGHMRTL 208

Query: 62  GLSLSESISRMVRY------MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            L L    SR + +      + + E    +T++    ++G +L + L   S  +R R+ +
Sbjct: 209 SLELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRIL 268

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            A+ +A+++ AK       +LP     L+ F  P  + VLI
Sbjct: 269 MAEEKAMALPAKM------TLP-----LIIFVFPVLLGVLI 298


>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
 gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR+ + L DF N +  +     AGL + DA A +    +  +  E +  ++    G+S
Sbjct: 140 IKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGVS 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVI-----SVQSQLGGNLSEALA---NLSRILRDRKNMK 116
            +E+I        + E+  F++ I        S+L   L E  A   NL R L  R+  K
Sbjct: 200 ETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTALLQEQSAETWNLKRQLVKREGEK 259

Query: 117 AKVQAL 122
           A  + L
Sbjct: 260 ASSKLL 265


>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 67/127 (52%), Gaps = 3/127 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ-HLG 62
           +++  ++ + FP+ +D+++    AG+ +   +  +  +   + P  S+  +++  +   G
Sbjct: 168 REKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSLELRAG 227

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A+ +A 
Sbjct: 228 RSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAH 287

Query: 123 SMEAKAS 129
           ++ AK S
Sbjct: 288 ALPAKMS 294


>gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304]
 gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 651

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 45/86 (52%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L  +  +  +G+P+  A+ +I    + P+R E  ++      G+SLS+++ R    +
Sbjct: 437 PIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGISLSDALVRFANRL 496

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEAL 102
            + E+S   T+++   +  GN++E L
Sbjct: 497 KIFEISRTMTLLNEALKSTGNVTEVL 522


>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
 gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
          Length = 315

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 275 EEVAAKIPVK 284


>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 292

 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 56/121 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ +   D P+ LD++  +VR+G+    AV  +      P+  E R  I +  LG++  
Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++          + V+ F +      +LG  L++AL ++S  +R  +  + +  A   + 
Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261

Query: 127 K 127
           K
Sbjct: 262 K 262


>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
 gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
          Length = 285

 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQH 60
           ++K +  K + D P  +D++  +V+ G+ +  A   VA+   + +  +     R+I    
Sbjct: 130 ILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   LS ++  +   +P  EV  F +V+      G ++   L  LS  +R+ + +  + +
Sbjct: 190 IT-GLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEEK 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             ++ AK S  +I  + F +  L+   +PG M V  N
Sbjct: 249 LGTLAAKMSIPLILFIMFPIIILIL--APGIMRVFPN 283


>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 326

 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 2   KHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRR 54
           K+ + +R A+  ++    FP++LD+++  V AG  +  ++  +  +   S   +  EF  
Sbjct: 161 KYWVTRRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDI 220

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G    + +  M     +Q++S F TV+   +  G +++EAL   +  +RD++ 
Sbjct: 221 VAHEMKAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRV 280

Query: 115 MKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           M+A+  A  +  K + A ++ ++P     L+    P   N++
Sbjct: 281 MRAEEAANKLPVKMTLATMMLTVP---PLLIILVGPSVKNIM 319


>gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 647

 Score = 38.5 bits (88), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 53/97 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  + L   P  L+ +  +  +G+P+  A+A+I    + P++ E +++      G+SL
Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           ++++ R    + + E+S   T+++   +  GN++E L
Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVL 522


>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
           SC2]
 gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
           SC2]
          Length = 292

 Score = 38.5 bits (88), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET---QH 60
           ++KR  + L + P  L  ++  V AG  V  A+   V  + +D V   +R +++T     
Sbjct: 139 VQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTVGEWE 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114
            G S  ++   + +   +QEV+ F+T + +  + GG +   AL  LS+ L  ++ 
Sbjct: 199 SGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRT 253


>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 319

 Score = 38.5 bits (88), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K R  +     P+ LD +  +++AG+P+  A+  +V     P+  E +R      LG+
Sbjct: 159 LAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELELGV 218

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E+  R+V     +E+      +   S+LG  ++     ++  +R  +  K K +A  
Sbjct: 219 PREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEKA-- 276

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             AKAS       P       +  +PG M
Sbjct: 277 --AKAS-------PKVTLVTSFIITPGVM 296


>gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 245

 Score = 38.5 bits (88), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L +V  F+ V +   + GG L   + + S ++RD+  ++ ++  ++   +    I+  +P
Sbjct: 136 LDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQEEIATMTAAKQFEQKIMNLIP 195

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG-----VAAAFMLIG 175
           F +   V  +SPG+ +++     G  ++       AAA++L G
Sbjct: 196 FFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAYVLAG 238


>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
 gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
          Length = 321

 Score = 38.5 bits (88), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           FP++LD+++  V AG  +  ++  +  +  S  P +  EF  V +    G   +  +  M
Sbjct: 177 FPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEAKAGKDKNTVLKDM 236

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                + +++ F TV+   SQ G ++++AL   S  +RD++ M+A+ +A  +  K
Sbjct: 237 SDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEEKANKLPTK 291


>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
          Length = 306

 Score = 38.5 bits (88), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR  +   + P+ +D++  +++AG+ +  A+   V  ++ P+  E  R+ +   
Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+    +   ++      E+      +     LG  +SE  A  +  +R+ +  KAK Q
Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262

Query: 121 ALSMEAKASA 130
           A   E K SA
Sbjct: 263 AGKSEPKISA 272


>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 313

 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + ES+  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 273 EEIAAKIPVK 282


>gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
 gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
          Length = 315

 Score = 38.1 bits (87), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L + L  LS  LRD    ++++
Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+  T P    ++ N   G ML+   AA   I +   
Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLMA-TQPA-ARMVYNSFAGAMLMIAGAA---ISLAAY 298

Query: 180 RLMI 183
           RLM+
Sbjct: 299 RLML 302


>gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 402

 Score = 38.1 bits (87), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P++ A+  +  Q ++P +R+    V      G S S+++S             FST+
Sbjct: 78  AGIPLTRALFTLSKQIANPTLRNAVSDVARNVEGGQSFSDALS--------AHPGIFSTL 129

Query: 88  ---ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
              ++   ++GG LSEAL+ LS  L   K+++  V++ S    A   ++G     V  ++
Sbjct: 130 FVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHVRSASFYPIA---VLGFAGVVVLAML 186

Query: 145 YFTSPGYMNVLINDPRGHML 164
           YF  P +M      P G +L
Sbjct: 187 YFLVPVFMQFF---PEGMVL 203


>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 292

 Score = 38.1 bits (87), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
           IK R    +   PN LD+++ SV +G  +  A+  I+ +   DP+  E  R      LG 
Sbjct: 137 IKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQMQLGR 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++++  M + +   +++     I    +LG ++ + L    R+  D +  K    A  
Sbjct: 197 KRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLL----RVQGDMQRNKRFSLAEK 252

Query: 124 MEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           +  +A+  II  + FC+  S L+    P  + VL
Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIFGPLALQVL 286


>gi|324330324|gb|ADY38542.1| TrdJ [Streptomyces sp. SCSIO1666]
          Length = 497

 Score = 38.1 bits (87), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKAK 118
           +GL +S  IS     +P QEV   S  +S   QLGG++  AL N   + +  DR     +
Sbjct: 377 VGLVISPCISAATYRVPPQEVGVVSAFVSTSQQLGGSIGTALLNAIATSVTADRIAGGGR 436

Query: 119 VQALSMEAKASAWIIGSL 136
            +   +EA    + + SL
Sbjct: 437 AERAVIEATVHGYAVASL 454


>gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b]
 gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b]
          Length = 405

 Score = 38.1 bits (87), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 27  VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAG+P+  A +++ V   S+ ++    +V +    G++ SE+I +  R       +FFS
Sbjct: 77  IRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKKHPRVFS----NFFS 132

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCVSTLV 144
           + +++  +  GNL EAL  +   L+ + ++K KV  AL+     S   IG + F +  +V
Sbjct: 133 S-MALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSIVAIGVVAFLMVNVV 191


>gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 295

 Score = 38.1 bits (87), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  +   
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKHE 177

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + + +Q+GGN L   L +L  +LR  +  + +V A        A +  
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
           + P+ +  L+  + PG + V  + P G M+L V A    L  +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLEV-YSTPVGSMILLVGALVSALAYLMMLRL 283


>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
 gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
          Length = 275

 Score = 38.1 bits (87), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P+ LD++  ++ AGLP+  AV  +  +++  +  E+R V     LG+    ++  +  
Sbjct: 136 ELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALVALAE 195

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             P   V      +   ++ G  L EALA  +R  R  +  +   QA
Sbjct: 196 RCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQA 242


>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
 gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
          Length = 298

 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVL---- 201

Query: 61  LGLSLSESISRMVRYM 76
           +G+S  +++ R ++ M
Sbjct: 202 IGVSSGDTLERCLKRM 217


>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
 gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
          Length = 294

 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVG---QSSDP--VRSEFRRVIETQHLGLSLSESISR 71
           P+A+D++V SV AGL +  A+ + VG   ++ +P   R   R   E Q  G   +  ++R
Sbjct: 151 PDAIDLLVISVEAGLALDRAL-LRVGHYLEALEPGLARQFLRTHAEIQMRG-DQASCLAR 208

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +     L E+   +  + +  Q G  L+E +  +S+  R  + +  + QA S+  K +  
Sbjct: 209 LAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT-- 266

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +I      +  LV   +P  +N+LIN  R
Sbjct: 267 LIQMALIMLPMLVLIIAP-TLNLLINSLR 294


>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
 gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
 gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 300

 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + R 
Sbjct: 154 LPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRR 213

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F + +    +LG  ++E L  ++  +R     +A+ +A     KA+
Sbjct: 214 NNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKTIPKAT 267


>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
 gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
          Length = 309

 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL- 61
           +L KKR  +     P+ALD++V  V AGL +  A+  +    S+ ++  +R + E   L 
Sbjct: 145 YLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRV----SEEMKKTYRVIAEEFGLC 200

Query: 62  ------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G   S+ +  +     + ++   + ++    + G ++S+AL   S  +R R+  
Sbjct: 201 NFQLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQ 260

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            A+ +A     K            +  LV+F  PG   VL+ 
Sbjct: 261 IAEEKAAKTAVK-----------MIFPLVFFIFPGIFVVLVG 291


>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
 gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
          Length = 326

 Score = 37.7 bits (86), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +++ R  + +   P+ALD++V  V AGL + D     VG+   P+  +        +L +
Sbjct: 165 VVRSRQNRIMRALPDALDLMVVCVEAGLGL-DMTFRRVGEEIRPLSHDLSDEFHLTNLEI 223

Query: 64  SLSESISRMVRYMPLQ----EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              +  +   + M L+    EVS   T++   S+ G +L++AL    R+  D   +K + 
Sbjct: 224 RAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKAL----RVHSDAMRIKRRQ 279

Query: 120 QALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
            A    AK++  +I  L F +  +  V    PG + ++
Sbjct: 280 IAEEKAAKSTVKLIFPLVFFIFPAIFVVLVGPGVIRII 317


>gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 268

 Score = 37.7 bits (86), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 47  PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANL 105
           P+  E+ R+I +   G S ++SI    R   +QE S F+TV+ +  + GG+    AL  L
Sbjct: 162 PLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVLALKEL 221

Query: 106 SRILRDRKNMKAKVQALSMEAK 127
           S  L +++   A+++     +K
Sbjct: 222 SFSLWEKRKATARMRGEEASSK 243


>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 294

 Score = 37.7 bits (86), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 17  PNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           P+A+D++V SV AGL +  A   V   +G     +  +F R      +    +  ++R+ 
Sbjct: 151 PDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGDQASCLARLA 210

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L E+   +  + +  Q G  L+E +  +S+  R  + +  + QA S+  K +  +I
Sbjct: 211 WRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT--LI 268

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
                 +  LV   +P  +N+LIN  R
Sbjct: 269 QMALIMLPMLVLIIAP-TLNLLINSLR 294


>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
 gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
          Length = 298

 Score = 37.7 bits (86), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVL---- 201

Query: 61  LGLSLSESISRMVRYM 76
           +G+S  +++ R ++ M
Sbjct: 202 IGVSSGDTLERCLKRM 217


>gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1]
 gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus
           NA1]
          Length = 355

 Score = 37.7 bits (86), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  +   + AG+ +S+A+  +       +  EF  ++     
Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           G S  E++++    M  + VS     I    + GGNLSE L  ++        MK
Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMK 283


>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 314

 Score = 37.7 bits (86), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61
           ++ R  +  ++FP+A+D+++  V AGL + DA  + VG+      P+ ++   ++   +L
Sbjct: 152 VENRQREIFNNFPDAIDLLLVCVEAGLGL-DAALLKVGEEMRIKSPILADELHLV---NL 207

Query: 62  GLSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            L    +  R +R + +    QEV     ++    + G ++ E+L   +  LR ++ ++A
Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +  A    AK    ++  L FC+  + L+    P ++ +
Sbjct: 268 EEAA----AKIPLKLLFPLIFCIFPALLLVLLGPAFIQI 302


>gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 286

 Score = 37.7 bits (86), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 7/183 (3%)

Query: 4   LIKKRTAKFLDD---FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++++R A+  D    +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E   
Sbjct: 94  VLRRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              S S  + R+   +           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 154 ATGSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMV 178
           +        +A +  + P+ V  L+   S G      + P G + LLG A   +L  +++
Sbjct: 214 ETRQAWTVNAARLAMAAPWIV--LLLLASRGENIQAYDSPTGVLVLLGGAGVSVLAYVLM 271

Query: 179 MRL 181
            R+
Sbjct: 272 KRI 274


>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 321

 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG---LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           R  K  + FP+ALD++V    +G   L     V+V +  S   +  E   V +    G+ 
Sbjct: 167 RMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQKNRAGIE 226

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS ++        L ++   +  I+   +LG  ++E L   +   RD++   A+     M
Sbjct: 227 LSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAAE----EM 282

Query: 125 EAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
            AK    II  +  C+  S  +    P  + V+
Sbjct: 283 AAKLGVKIIFPMLTCIWPSFFIVAVGPAVIKVM 315


>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 314

 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +I KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 275 EEMAAKIPVK 284


>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 315

 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 2   KHLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRR 54
           +  ++KR AK  +      P+ALD++V S+ AGL +  A+  +  +  +S P +  E + 
Sbjct: 146 RFFLEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQL 205

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G   SE++          E      ++    + G ++ E+L   S  LR R+ 
Sbjct: 206 VTLEMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRR 265

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
            +A+ +A     K    ++  + F +  S LV    PG + + 
Sbjct: 266 QEAEERA----GKVGVKLVFPIFFFILPSMLVVAAGPGILQIF 304


>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVIETQH 60
           +++R    L + P  L+ IV  V AG  V  A+ + +     Q   P+  E  ++ +   
Sbjct: 138 VQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQKEWE 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G S  +++    +   +QEVS F+T + +  + GG + + AL +LS  L +++    + 
Sbjct: 198 GGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKAVGRT 257

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
                E  +S  +   +   ++ L+   +P +M
Sbjct: 258 LG---EQASSKLVFPMVLLFMAVLILVGAPAFM 287


>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 297

 Score = 37.7 bits (86), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P+ LD++   V AGL    A+  +  +   P   E R  ++   +G+S  ++   + R  
Sbjct: 151 PDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMTMGVSRRQAFDELRRRN 210

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             ++V+ F T +    +LG  + E L  L+  +R      A+ +A     KA+       
Sbjct: 211 DSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRRAARAVPKAT------- 263

Query: 137 PFCVSTLVYFTSPGYMNVLI 156
            F V+T   F  PG + +L+
Sbjct: 264 -FAVTT---FMLPGTLILLV 279


>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score = 37.4 bits (85), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 17  PNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           P+A+D++V SV AGL +  A   V   +G     +  +F R      +    +  ++R+ 
Sbjct: 151 PDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHAEIQMRGDQAGCLARLA 210

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L E+   +  + +  Q G  L+E +  +S+  R  + +  + QA S+  K +  +I
Sbjct: 211 WRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLALEEQAGSLPGKIT--LI 268

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPR 160
                 +  LV   +P  +N+LIN  R
Sbjct: 269 QMALIMLPMLVLIIAP-TLNLLINSLR 294


>gi|288966008|gb|ADC79648.1| TamJ [Streptomyces sp. 307-9]
          Length = 498

 Score = 37.4 bits (85), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKAK 118
           +GL +S  IS     +P QEV   S  +S   QLGG++  AL N   + +  DR     +
Sbjct: 378 VGLVISPCISAATYRVPPQEVGVVSAFVSTSQQLGGSIGTALLNAIATSVTADRIAGGGR 437

Query: 119 VQALSMEAKASAWIIGSL 136
            +    EA    + + SL
Sbjct: 438 AERAVTEATVHGYAVASL 455


>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 324

 Score = 37.4 bits (85), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61
           +  R  +  + FP+ALD+++  V AG  +  A   VA  +      +  EF  V      
Sbjct: 165 VDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEIKA 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + +  M     + +V  F TV+   +  G +++EAL   +  +RD++ M+A+ +A
Sbjct: 225 GKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKA 284

Query: 122 LSMEAK 127
            ++  K
Sbjct: 285 NTLPTK 290


>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
 gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
          Length = 309

 Score = 37.4 bits (85), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/105 (21%), Positives = 52/105 (49%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +  +  P+ L  +   +R G+ + +A+  +    + P+  E RRV+    +G S 
Sbjct: 92  ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            ES   M + +  +++     +I    + GG L++ ++++S  LR
Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLR 196


>gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 260

 Score = 37.4 bits (85), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 10/178 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVS----DAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +R A+ L+     L  ++  ++AG P+     +A   +     +P + EF   +     G
Sbjct: 77  ERAAEALEGL---LVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEF---LAALGAG 130

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L L E++        L+ +     V S   + GG+++     + + LR+++   A+V A 
Sbjct: 131 LPLEEALGLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAAR 190

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + EA+ SA ++  LP  V+       P ++  L  DP G   L  A    L G+ ++R
Sbjct: 191 TAEARLSARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLR 248


>gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
 gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
          Length = 284

 Score = 37.4 bits (85), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 93  VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L + L  LS  LR+    ++++
Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+  T P    ++ N   G ML+   AA   I +   
Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLMA-TQPA-ARMVYNSFAGAMLMIAGAA---ISLAAY 267

Query: 180 RLMI 183
           RLM+
Sbjct: 268 RLML 271


>gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 274

 Score = 37.4 bits (85), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  +   
Sbjct: 98  WPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELKEQ 157

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121
           +           + +  ++GG  L + L  L+R LRD   ++++ +A
Sbjct: 158 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEA 204


>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 302

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 9/128 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIE 57
           + H I  R  K  +  P+ALD++V  V AGL ++ A+  +    + ++PV S EF  +  
Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNM 115
               GL   +++  +     ++E+S    ++    + G ++++AL    R+  D  R N 
Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQAL----RVQSDTMRTNR 256

Query: 116 KAKVQALS 123
           + +++ L+
Sbjct: 257 RQRLEELA 264


>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
 gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
          Length = 313

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 273 EEIAAKIPVK 282


>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 313

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 273 EEIAAKIPVK 282


>gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
 gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
          Length = 355

 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 47/101 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A   +       +  EF  +++  H G S 
Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
            +++S+    M  + V+  +  I    + GGNL++ L  ++
Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMA 273


>gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB]
          Length = 298

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLS 64
           + +  KF  + P AL ++V S+ +G  + +A+  ++      V S F + V+      LS
Sbjct: 79  ESKMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLS 138

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +S+  +   +  +     S +I    + GG L+  L  L++ L D +N+K+++ +++ 
Sbjct: 139 FEDSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISVTG 198

Query: 125 EAKASAWII--GSLP 137
              A   +I  G +P
Sbjct: 199 NGLAVGLVILCGVIP 213


>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLG 62
           + R  +    FP+ALD++V  V +GL +   +  +  +   S   +  E   V      G
Sbjct: 165 QARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIRAG 224

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++ +E++ ++     L+++    ++++   + G ++++ L   +   RDR+   A+    
Sbjct: 225 ITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAE---- 280

Query: 123 SMEAKASAWIIGSLPFCV 140
            M AK    +I  L FC+
Sbjct: 281 EMGAKIGTKLIFPLIFCL 298


>gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 295

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  +   
Sbjct: 118 WPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILKHE 177

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + + +Q+GGN L   L +L  +LR  +  + +V A        A +  
Sbjct: 178 LADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARLAA 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF-MLIGIMVMRL 181
           + P+ +  L+  + PG +  + + P G M+L V A    L  +M++RL
Sbjct: 238 ASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRL 283


>gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 266

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            H  +KR+ +    F + L+ +  S+ AG+ V D++                 V E  ++
Sbjct: 77  NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136

Query: 62  GLSLSESISRMVRYMPL--------QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            +  + +I+  +  M L        +++  F+       + GGN+ E + N   IL D+ 
Sbjct: 137 LIGFNNNIN--IETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKI 194

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL------GV 167
            ++ +V+ +   ++    I+  +P   S +        +NV+  D  GH  L      G 
Sbjct: 195 TIEMEVKTMIAASRNELNIMMCMPVLFSLV--------LNVMGGDITGHATLIGRIATGA 246

Query: 168 AAAFMLIGIMV 178
           A    +I  MV
Sbjct: 247 AVMMFIIAYMV 257


>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 320

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 75/156 (48%), Gaps = 14/156 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRS-EFRRVIETQHL 61
           ++ R     ++FP+ LD++   V AGL +  A+  +  + +   PV + E    +     
Sbjct: 157 VEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLLELRS 216

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    ++++ +     +++V  F++++    + G +L+++L  LS +LR ++ M+A+ QA
Sbjct: 217 GFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRAEEQA 276

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             +  K            +  L++F  P  + VL+ 
Sbjct: 277 AKIALK-----------LLFPLIFFIFPTLLLVLLG 301


>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 296

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 51/114 (44%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + R 
Sbjct: 150 LPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMDMGVSRRQAFDELRRR 209

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F + +    +LG  +++ L  L+  +R      A+ +A     KA+
Sbjct: 210 NTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRRAAKTIPKAT 263


>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
 gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
          Length = 312

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR  +   D P+ LD +  S++AG  +  A+  ++   S P++ EF   ++   LG+  
Sbjct: 153 KKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEIDLGVPR 212

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++   ++     +E   F   +   ++LG  ++  L + +  +R     + K +A    
Sbjct: 213 EKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEKA---- 268

Query: 126 AKASAWIIGSLPFCVSTLV 144
           AKAS  +     F ++ L+
Sbjct: 269 AKASPKVTMITSFIIAPLI 287


>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 304

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 55/120 (45%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +  D  P+ LD++  SV AGL    A+  +V +    +  E  R+++   +G    +
Sbjct: 156 RQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVKMGKPRRD 215

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +     +++V  F   +    QLG ++   L   S  +R ++  +A+ +A+    K
Sbjct: 216 ALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQKAMKAPVK 275


>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
 gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 301

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 51/114 (44%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + + 
Sbjct: 155 LPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRKR 214

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
              ++V+ F + +    +LG  ++E L  L+  +R      A+ +A     KA+
Sbjct: 215 NSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRRAAKTIPKAT 268


>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 328

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGL 63
           KR  K     P+ALD++V  V AGL +  A   VA  + +S   +  EF        LG 
Sbjct: 174 KRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGS 233

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             SE +S +     + ++   ++++    + G ++++AL    R+  D  +M+ K + ++
Sbjct: 234 PRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQAL----RVQSD--SMRTKRRQIA 287

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            E  A   +    P     LV F  PG   VL+ 
Sbjct: 288 EEKAAKTAVKMIFP-----LVLFIFPGIFVVLVG 316


>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
 gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
           1]
          Length = 328

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHLGL 63
           KR  K     P+ALD++V  V AGL +  A   VA  + +S   +  EF        LG 
Sbjct: 174 KRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGS 233

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             SE +S +     + ++   ++++    + G ++++AL    R+  D  +M+ K + ++
Sbjct: 234 PRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQAL----RVQSD--SMRTKRRQIA 287

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            E  A   +    P     LV F  PG   VL+ 
Sbjct: 288 EEKAAKTAVKMIFP-----LVLFIFPGIFVVLVG 316


>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 326

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVS---DAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +R  + L+ FP+ LD+++  V AG+ +    D V   +  S   V  +  +       G 
Sbjct: 166 RRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTLELRAGA 225

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           S  E++  +     + E+  F+T++    +LG +++  L   +  +R+++ M+A+ +A
Sbjct: 226 SREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRAEEKA 283


>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 189

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++KR A+   D P A+D++   +RAG P   A+A  VG + D P+      V     LG 
Sbjct: 35  VRKRNARISADLPLAVDLLAACLRAGRPPQAAIAT-VGHALDGPLAGLLAEVERRLDLGA 93

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ++ S ++R  P    + F+       + G  L++ L + S  LR  +   A+ Q  +
Sbjct: 94  DAIDAWS-VLRAEP--TCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRA 150

Query: 124 MEAK 127
           +E +
Sbjct: 151 VETR 154


>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 321

 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-----RVIETQHLG 62
           R ++     P+ALD+I  +  AGLP+  ++  +   S + VRS         +++ Q   
Sbjct: 146 RVSRIQHALPDALDMITMTTTAGLPLQKSIKRV---SDEMVRSHEDLACELMILDRQAET 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNM 115
            SL ++I    + + + EV+  +++++   ++GG+++ A  + +  I R R+ +
Sbjct: 203 GSLGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQL 256


>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   VAV +G  S P+  EF     
Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  LS+++  +++  RD +  +A
Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWII 133
           + +A ++  K +  +I
Sbjct: 286 EKKAAALPPKLTVPMI 301


>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 327

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQH 60
           I KR     +DFP+ALD++   V AGL + DA  + V +     S+ V  E   ++    
Sbjct: 164 ITKRQRTIFEDFPDALDLLTVCVEAGLGL-DAALMRVSEELRFRSEVVSGELDLLLLEMR 222

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +   ++  +     ++++  F  ++    + G +++E+L  LS +LR R+ M+A+ +
Sbjct: 223 SGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRAEER 282

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A  +  K    ++  L FC+        P  M VL+     H+   +  +F  IG
Sbjct: 283 AARIALK----LLFPLIFCI-------FPALMGVLLGPAMIHVYRVLLPSFATIG 326


>gi|258544824|ref|ZP_05705058.1| ribonuclease G [Cardiobacterium hominis ATCC 15826]
 gi|258519929|gb|EEV88788.1| ribonuclease G [Cardiobacterium hominis ATCC 15826]
          Length = 487

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           A+  + I G LP     L  F SPG   V+++ P  H  +   AA  L+G+   RL
Sbjct: 200 ARPGSLIYGELPLYQKVLRDFVSPGVRRVVVDHPGAHREMQAFAANFLVGMEQTRL 255


>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
 gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
          Length = 303

 Score = 36.6 bits (83), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRV-IET 58
           + H  K R  +     P AL+++  SV AG+ V      +   ++  P+  EF R  +E 
Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            HLG+S  +++  M R      + +F   +   ++ G ++S  L + +++ R     KA+
Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLAR-----KAR 257

Query: 119 VQALSME 125
             AL+ +
Sbjct: 258 YDALTAQ 264


>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 187

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 14/153 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESIS 70
           +DFP+ALD++   V AGL +  A+  +  +    S  V SE   ++     G +   ++ 
Sbjct: 33  EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +     +++V  F T++    + G +++E+L    R+L D    + +++A    AK + 
Sbjct: 93  NLALRTGVEDVESFCTMLIQADRFGTSVAESL----RVLSDMLRTRRRMRAEERAAKIAL 148

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            ++  L FCV        P  M VL+     H+
Sbjct: 149 KLLFPLIFCV-------FPALMGVLLGPALIHV 174


>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 312

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           I  R  + L   P  LDI+   V AGL +  A++  V +      R E +RV+     G 
Sbjct: 159 IALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDVRAGK 218

Query: 64  SLSESISRMVRYMPLQE---VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + +E++  M     L+E    SF ++VI  +S +G NL   L   +   R  +  +A+ +
Sbjct: 219 ARAEALRAMAER--LREPGITSFVTSVIQAES-MGMNLGPVLRAQADQRRSERFQRAEKK 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           AL    K    +I  +  C   +++F
Sbjct: 276 ALEAPVKLLLPLIAFIFPCTFIVLFF 301


>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
          Length = 313

 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++  M
Sbjct: 170 LSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAALKAM 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMKA 117
            R + L  V  F   + +    G  L++ L   ++ +R+   R+ M+A
Sbjct: 230 GRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEA 277


>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 300

 Score = 36.2 bits (82), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 44/94 (46%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++   + R  
Sbjct: 155 PDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVSRRQAFDELRRRN 214

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
             ++V+ F + +    +LG  ++E L  L+  +R
Sbjct: 215 TSEQVAQFVSALQQGEELGSPIAETLIQLAADMR 248


>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 335

 Score = 36.2 bits (82), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56
           +++L+ KRT       P+ALD++V    AGL V  A   VA  +G++   +  EF    I
Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E   L      +   +   + L  V    T +    + G  L+ AL  LS   R+ + M+
Sbjct: 231 ELSFL-TERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMR 289

Query: 117 AKVQALSMEA 126
           A+ +A  + A
Sbjct: 290 AEEKAARLPA 299


>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 322

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 4   LIKKRTA----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRV 55
           ++ +RTA      ++DFP+ALD++   V AGL + DA  + VG+     S  V SE   +
Sbjct: 155 VLSRRTAARQRSLVEDFPDALDLLTVCVEAGLGL-DASLMKVGEEIRLRSAVVASELELM 213

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +     G S  +++        ++++  FS ++    + G ++  +L    R+L D    
Sbjct: 214 LLEMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASL----RVLSDTLRT 269

Query: 116 KAKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           + +++A    AK +  ++  L FC+  + LV    P  +++
Sbjct: 270 RRRMRAEERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHI 310


>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 323

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHLG 62
           + R     + FP++LD+++  V AG  +  ++  +  +  S  P + SE+  V      G
Sbjct: 165 QTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMKAG 224

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
              +  +  M     + +++ F TV+ +QSQ  G +++EAL   +  +RD++ M+A+ +A
Sbjct: 225 KDKTSVLRDMSERCGVPDIASFVTVL-IQSQSFGTSIAEALRVYAGEMRDKRVMRAEEKA 283

Query: 122 LSMEAK 127
            ++  K
Sbjct: 284 NTLPTK 289


>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 333

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ I KR    +  FP+ALD+++  V AG+ +  A+ V V Q       E     E   
Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAI-VKVSQEIGTTSVELAE--ELAL 216

Query: 61  LGLSLSESISRMVRYMPLQE------VSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           L   LS    R + Y  L +      V   ST +    Q G  L  AL  +++  RD + 
Sbjct: 217 LSAELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRL 276

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             A+ +A ++ A+ +  +I  + F     V    P  +N+
Sbjct: 277 SAAEKKAAALPAQLTVPMI--IFFLPVLFVVILGPAIINI 314


>gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
          Length = 285

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F++       G   
Sbjct: 99  RRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYRAGARF 158

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
            +++ R+   M           + +  ++GG ++   L  LS  LR    ++A+     +
Sbjct: 159 VDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAE-----L 213

Query: 125 EAKASAWIIGS--LPFCVSTLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           EA+ S W + +  L  C   LV     T P  +    +   G +LL    A M+  ++  
Sbjct: 214 EARQS-WTVNAARLAVCAPWLVLLLLGTQPAAVAAYRSAAGGAVLL----AGMVASVVCY 268

Query: 180 RLMIN 184
           R+M+ 
Sbjct: 269 RVMLR 273


>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 313

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVI 56
           +  L+ +R  +  + FP+A+D++   V AGL + DA  V V +     S  + SE   V 
Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGL-DAAMVRVAEEMRLRSKALASELHLVS 206

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G +  +++  +     ++E+    +++    + G +++ +L   S  LR  + ++
Sbjct: 207 LELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLR 266

Query: 117 AKVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           A+  A    AK +  ++  L F +  S L+    P ++N+
Sbjct: 267 AEEAA----AKIALKLLFPLIFFIFPSLLLVLMGPAFINI 302


>gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 284

 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KRTA     +P+ +D +  ++RAGL + +A+  +  +  + +R  FR        G   
Sbjct: 98  RKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYRAGGQF 157

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
             +++R+   +           + +  ++GG +L   L  L   LR+    +++++A
Sbjct: 158 DPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSELEA 214


>gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score = 35.8 bits (81), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 51/110 (46%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L++V  F+ V +   + GG L   +   + I+RD+  ++ ++  ++        I+  +P
Sbjct: 118 LEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQVQEEIHTMTAARVFEQKIMNGIP 177

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           F +   +  TS G+  V+     G  ++ +  A  L   M+ + ++  +V
Sbjct: 178 FLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGAWMLSKKILEIEV 227


>gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
          Length = 404

 Score = 35.8 bits (81), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           VR+GLP+ +A+  +  QS  P +RS    V      G +L+  +S      P      + 
Sbjct: 78  VRSGLPIEEALGTVARQSEKPRIRSMLMAVRTRVMEGHTLARGLSDFPHVFP----DIYR 133

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           T +    Q  G+L   L  L+    +R+ M+ K+Q
Sbjct: 134 TTVEAGEQ-SGHLEVVLERLADYTENRQQMRQKIQ 167


>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 311

 Score = 35.8 bits (81), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQ 59
           +K  ++K         P+ LD++V  + AGL + +++   VG+    +   F   I+  Q
Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ-VGEELRWIHPAFTHEIDLVQ 208

Query: 60  H---LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           H   LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   
Sbjct: 209 HDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQA 268

Query: 117 AKVQA 121
           A+  A
Sbjct: 269 AEENA 273


>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
 gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
          Length = 313

 Score = 35.8 bits (81), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQ 59
           +K  ++K         P+ LD++V  + AGL + +++   VG+    +   F   I+  Q
Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQ-VGEELRWIHPAFTHEIDLVQ 210

Query: 60  H---LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           H   LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   
Sbjct: 211 HDIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQA 270

Query: 117 AKVQA 121
           A+  A
Sbjct: 271 AEENA 275


>gi|330948965|gb|EGH49225.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 55

 Score = 35.8 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           GGN SE + NL +++RDR+    +++A++ E + +A ++  LP  +S   YF
Sbjct: 5   GGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLP--ISMAGYF 54


>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
 gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
          Length = 325

 Score = 35.8 bits (81), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRS-EFRRVIE 57
           +K + K+R A     FP+ALD+++    +GL + ++   +    Q + P  S E   V  
Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+L +++        L+++   ++VI    +LG  ++  +   S   R+++   A
Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 283 EENAAKLGVK 292


>gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 285

 Score = 35.8 bits (81), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E      S S  + ++   
Sbjct: 108 WPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSCLDKLADE 167

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV---QALSMEAK---- 127
           +           + +  ++GG +L   L  LS  LR+    +A++   Q+ ++ A     
Sbjct: 168 LADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARLAL 227

Query: 128 ASAWII 133
           A+ W++
Sbjct: 228 AAPWVV 233


>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 283

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---- 56
           ++H   KR A   + +P  +D +  ++RAGL + +A++ +       +R  FR       
Sbjct: 92  LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
            T +  ++L +   R+    P+ +     T + +  ++GG +L   L  LS  LRD    
Sbjct: 152 ATANFAVALDQLGERLAD--PVADKIL--TTLRITREVGGTDLGHTLTTLSAFLRDDVRT 207

Query: 116 KAKVQA 121
           + ++ A
Sbjct: 208 RGELAA 213


>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 292

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 54/117 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  K   + PN LD ++ +V AGL    A+A        P+  E  R ++   +G S 
Sbjct: 141 QERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQVGRSR 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +S   +     +Q++  F   +      G  +++ L   ++ +R ++  +A+ +A+
Sbjct: 201 RDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQKAM 257


>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 358

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 45/111 (40%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     G S 
Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            E++ R    M  + VS     I    + GGNL+E L  ++        MK
Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMK 281


>gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 285

 Score = 35.8 bits (81), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F+        G   
Sbjct: 99  RRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYRAGARF 158

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
            +++ R+   M           + +  ++GG ++   L  LS  LR    ++A+     +
Sbjct: 159 VDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAE-----L 213

Query: 125 EAKASAWIIGS--LPFCVSTLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           EA+ S W + +  L  C   LV     T P  +    +   G +LL    A M+  ++  
Sbjct: 214 EARQS-WTVNAARLAVCAPWLVLLLLGTQPAAVAAYRSAAGGAVLL----AGMVASVVCY 268

Query: 180 RLMIN 184
           R+M+ 
Sbjct: 269 RVMLR 273


>gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5]
 gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5]
          Length = 298

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69
           KF  + P AL ++V S+ +G  V +A+  ++      V   F +V+       LS  +++
Sbjct: 84  KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKLSFEDAM 143

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++    A 
Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAV 203

Query: 130 AWII--GSLP 137
             II  G +P
Sbjct: 204 GLIILCGVIP 213


>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 313

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++  M
Sbjct: 170 LSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAALKAM 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD---RKNMKA 117
            R + L  V  F   + +    G  L++ L   ++ +R+   R+ M+A
Sbjct: 230 GRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREMGRRELMEA 277


>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
          Length = 193

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 33  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 91

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 92  KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 151

Query: 116 KAKVQALSMEAKASAWIIGSLPF 138
           +  +  LS +     ++   +PF
Sbjct: 152 EESISKLSTKLTLPLFLFILIPF 174


>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 291

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 55/127 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  +KR      + PNALD ++ SV+AGL    A+         P+  E  R ++   
Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +   + +  V  F   +      G  ++  L   ++ +R ++   A+  
Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254

Query: 121 ALSMEAK 127
           A+ M  K
Sbjct: 255 AMKMPVK 261


>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
 gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
          Length = 301

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +    F +ALD++   V +G     A+  +    + P+  EF RV+    +G++  
Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSM 124
           ++   M       EV  F + +    +LG  ++  L   ++ +R   R+  + K Q +++
Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTV 268

Query: 125 E 125
           +
Sbjct: 269 K 269


>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 313

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/130 (20%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIE 57
           ++ + +KR  +  D  P+ +D++V    +G+ +  A+A I   + + +  +  EF   + 
Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L+++    T+     + G  +++AL   S +LR R+  +A
Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272

Query: 118 KVQALSMEAK 127
           +  A  +  K
Sbjct: 273 EEMAAKIPVK 282


>gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium
           sticklandii DSM 519]
 gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium
           sticklandii]
          Length = 405

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 12/131 (9%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+S+A+ V+  Q+ + V R   + V      GL LS+++ +  +  P    +   
Sbjct: 79  LNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKHKKVFP----NLLI 134

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144
           T++    ++ GNL   LA +S        + +K++ A+   A  S   +G + F ++ ++
Sbjct: 135 TMVEA-GEMTGNLDNVLAKMSEHYEKENKINSKIKGAMVYPAILSVAAVGVVIFLLTFIM 193

Query: 145 -----YFTSPG 150
                 FTS G
Sbjct: 194 PTFTEMFTSSG 204


>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
 gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
          Length = 333

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56
           +K+   KRT +     P+ALD++V    AGL V  A   VA  +G++   +  EF    I
Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E   L      + + +   + L+ V    T +    + G  L+ AL  LS   R+ + M+
Sbjct: 231 ELSFLN-ERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMR 289

Query: 117 AKVQALSMEA 126
           A+ +A  + A
Sbjct: 290 AEEKAARLPA 299


>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
 gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
          Length = 355

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 47/105 (44%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + ++R  +     P  L  +   + AG+ +++ +  +       +  EFR VI+  H 
Sbjct: 169 KSVWRRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHK 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
           G S  +++++    M    VS     I    + GGNLS+ L  ++
Sbjct: 229 GSSFEDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMA 273


>gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
 gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus
           gammatolerans EJ3]
          Length = 358

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 45/111 (40%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     G S 
Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            E++ R    M  + VS     I    + GGNL+E L  ++        MK
Sbjct: 231 EEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMK 281


>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 205

 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 45  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 103

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 104 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 163

Query: 116 KAKVQALSMEAKASAWIIGSLPF 138
           +  +  LS +     ++   +PF
Sbjct: 164 EESISKLSTKLTLPLFLFILIPF 186


>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 329

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 26/163 (15%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +KR        P+ALD++V  V AGL +  A+  +    S+ +R  +R + E   L  
Sbjct: 166 LGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKV----SEEMRKSYRVIAEEFSL-C 220

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQS---------QLGGNLSEALANLSRILRDRKN 114
           +L   + R  R   LQE+   S V  ++S         + G ++++AL   S  +R R+ 
Sbjct: 221 NLQLQMGRG-RTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRR 279

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             A+ +A     K            +  LV F  PG   VL+ 
Sbjct: 280 QIAEEKAAKTAVK-----------LIFPLVLFIFPGIFVVLVG 311


>gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 652

 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P+ L+ +    R GL ++ A+ ++V  +   +  E RR+      G + SE++ R  + +
Sbjct: 432 PDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSEALMRFEQRI 491

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALA 103
               ++   T+I+  S++ G + E LA
Sbjct: 492 STASIARTVTLITKASEMTGQIGEVLA 518


>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
 gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 311

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 37/74 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   + R  +   D P  LD +  +++AG+ +  A+  ++     P+R EF R  +   
Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207

Query: 61  LGLSLSESISRMVR 74
           LG+   ++  +++R
Sbjct: 208 LGVQREKAYEQLLR 221


>gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 404

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 29  AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  A+ ++  Q+ + + R     ++ +   G +  E+++R+  + P+        V
Sbjct: 78  AGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETFHEALARLQVFPPI-------MV 130

Query: 88  ISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQA 121
            ++++ +LGG+L EAL  L+  L     ++ KV++
Sbjct: 131 HAIEAAELGGSLDEALEELAAHLEREHELQEKVKS 165


>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
 gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
          Length = 331

 Score = 35.4 bits (80), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56
           +K+   KRT       P+ALD++V    AGL V  A   VA  +G++   +  EF    I
Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E   L     ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+
Sbjct: 231 ELSFL-TERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMR 289

Query: 117 AKVQALSMEA 126
           A+ +A  + A
Sbjct: 290 AEEKAARLPA 299


>gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 286

 Score = 35.4 bits (80), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A   + +P+ +D +   VRAGL + +AVA +  +    +R+ FR   E        
Sbjct: 100 RRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYRATGRF 159

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
           ++S+  +   +           + +   +GG +L   L  LS  LRD    + +++A
Sbjct: 160 TDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGELEA 216


>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 313

 Score = 35.4 bits (80), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMVR 74
            P+A++++  ++ AG P+      +      P+  EF  V  E   LG S  E++  + +
Sbjct: 167 LPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEALEHLGQ 226

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K    I+ 
Sbjct: 227 RCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD--IVL 284

Query: 135 SLPFCVSTLVYFTSPGYMNVL--INDPRG 161
           SL F   T+     P  +N+L  +ND  G
Sbjct: 285 SLCFLPPTVALVVVPTVVNLLNFLNDSMG 313


>gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
 gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score = 35.4 bits (80), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55
           K LI+KR  +    F   L +I+ S++AG  +  A+         +  +   + +E   +
Sbjct: 54  KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
             +  + + + + +    +   +++++ F+ V  V  + GGNL + + +  + + D+  M
Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173

Query: 116 KAKVQA-LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           + ++QA +S +   S ++   LP   + L+      YMN+ + D    +  G+    ++ 
Sbjct: 174 EREIQAFISGKKLESKFMTAILP---AILL------YMNISMADMMNSLYQGILGRLVMS 224

Query: 175 GIM 177
           G++
Sbjct: 225 GVL 227


>gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/180 (15%), Positives = 75/180 (41%), Gaps = 9/180 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-------VAVIVGQSSDPVRSEFRR 54
           + L K+   +    F + +  +  S+  G  + +A       + ++ G  S  +  EFR 
Sbjct: 57  RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSES-RIAKEFRI 115

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +        ++ + +        ++++ +F+ V     + GG+L   + N + ++RD+  
Sbjct: 116 ICNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNE 175

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG-HMLLGVAAAFML 173
           +   ++ +    +    ++  +PF +   +   SP ++  L  +  G  ++ G  A + L
Sbjct: 176 VAEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYAL 235


>gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
 gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
          Length = 250

 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSES 68
           A+     P+AL  I  +V  GL +  A  V+      P+   FRRV+    + G +  ++
Sbjct: 33  ARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPDA 92

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALSM 124
           +  +   + +     F+ ++   ++ G  L E L   +R    ++  R+++ A+++   +
Sbjct: 93  LWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYVL 152

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSP 149
              A   ++G        LVYF  P
Sbjct: 153 LYYA---VVGVFAALSDVLVYFMLP 174


>gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6]
 gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6]
          Length = 298

 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69
           KF  + P AL ++V S+ +G  V +A+  ++      V + F +V+       LS  +++
Sbjct: 84  KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERKLSFEDAM 143

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++    A 
Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAV 203

Query: 130 AWII--GSLP 137
             II  G +P
Sbjct: 204 GLIILCGVIP 213


>gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806]
 gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 404

 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+   + V+  QSS+P +R   + +      G  LS+++++         VS   
Sbjct: 77  INAGVPIMRCLGVLGDQSSNPKMRKALQAISTDVQQGSPLSQAMAKHTECFDELYVSMIE 136

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                  + GG L E L  LS++L D   +K ++++
Sbjct: 137 A-----GETGGVLDEVLLRLSKLLEDMARLKNQIKS 167


>gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score = 35.0 bits (79), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64
           + R  +   +FP  LD++V + +A   + +++ +    +   V S E  + ++   LG  
Sbjct: 149 QDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGTG 208

Query: 65  LSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + E++ R+ R M  +EV      VI  + + G N  E L   +R LR R+  KA   +  
Sbjct: 209 MIEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASEK 267

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 268 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 296


>gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 35.0 bits (79), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGL 63
           ++ R  +   +FP  LD++V + +A   + +++ +    +   V S E  + ++   LG 
Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALGT 206

Query: 64  SLSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            + E++ R+ R M  +EV      VI  + + G N  E L   +R LR R+  KA   + 
Sbjct: 207 GMVEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASE 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 266 KLKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295


>gi|332160536|ref|YP_004297113.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664766|gb|ADZ41410.1| general secretion pathway protein F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 402

 Score = 35.0 bits (79), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 27  VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81
           V A +P+ +A+A+I  QS+    D V  + R RV+E    G SLS+S+S+     P    
Sbjct: 76  VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           S + ++I+   +L G+L   L+NL+  +   + +K+K+
Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQTRKVKSKI 164


>gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 35.0 bits (79), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLS 64
           + R  +   +FP  LD++V + +A   + +++ +    +   V S E  + ++   LG  
Sbjct: 148 QDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGTG 207

Query: 65  LSESISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + E++ R+ R M  +EV      VI  + + G N  E L   +R LR R+  KA   +  
Sbjct: 208 MIEALQRLERRMTAEEVIRVIRAVIQGEVE-GSNRVELLREHARDLRFRRWEKADRASEK 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295


>gi|330863524|emb|CBX73640.1| hypothetical protein YEW_CV11520 [Yersinia enterocolitica W22703]
          Length = 402

 Score = 35.0 bits (79), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 27  VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81
           V A +P+ +A+A+I  QS+    D V  + R RV+E    G SLS+S+S+     P    
Sbjct: 76  VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           S + ++I+   +L G+L   L+NL+  +   + +K+K+
Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQTRKVKSKI 164


>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
 gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 307

 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 47/106 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R     +  P+ L+ I   +  GL    A+  +   S  P+ +E ++++         
Sbjct: 90  EHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQFKKPF 149

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           +ES+  +     L  + +   +I    + GGNL+E L ++S  L++
Sbjct: 150 NESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKE 195


>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
 gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
          Length = 301

 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSESISRMVR 74
            P+A++++  ++ AG P+      +      P+  EF  V  E   LG S  E++  + +
Sbjct: 155 LPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEALEHLGQ 214

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
               Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K    I+ 
Sbjct: 215 RCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD--IVL 272

Query: 135 SLPFCVSTLVYFTSPGYMNVL--INDPRG 161
           SL F   T+     P  +N+L  +ND  G
Sbjct: 273 SLCFLPPTVALVVVPTVVNLLNFLNDSMG 301


>gi|157150407|ref|YP_001449579.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|229486382|sp|A8AUW9|MUTS2_STRGC RecName: Full=MutS2 protein
 gi|157075201|gb|ABV09884.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 777

 Score = 35.0 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLS-----RILRDRKNMKAKVQALSMEAKASAWI 132
           + ++S   T I ++ +   NL+E ++N        +LR  + + A ++  + E   +AWI
Sbjct: 208 VHDISASGTTIYIEPRAVVNLNEEISNYKADERYELLRILQELSAMIRPHAAEIANNAWI 267

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           IG L   ++ L +    G +   I+D +   LL V
Sbjct: 268 IGHLDLVMAKLAFMRERGAVVPAISDTQAIQLLQV 302


>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
 gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
          Length = 329

 Score = 35.0 bits (79), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56
           + ++  KRT       P+ALD++V    AGL V  A   VA  +G++   +  EF    I
Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E   L     ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+
Sbjct: 229 ELSFLN-ERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMR 287

Query: 117 AKVQALSMEA 126
           A+ +A  + A
Sbjct: 288 AEEKAARLPA 297


>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 299

 Score = 35.0 bits (79), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQH 60
           +K R  +     P+A+D++V  V AGL +  A+ + VGQ    S   +  EF ++   Q 
Sbjct: 140 VKGRRHRISRSMPDAIDLLVICVDAGLGLDQAM-LRVGQELAVSHPEINEEFLQINREQR 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G    ++         L E+  F +++    + G  ++ AL   S  +R ++   A+ +
Sbjct: 199 AGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIAEEK 258

Query: 121 ALSMEAK 127
           A     K
Sbjct: 259 AAKTTVK 265


>gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
 gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
          Length = 478

 Score = 35.0 bits (79), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 18/167 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57
           +K  +KKR  +   D+P  L  I+    AGL +  ++  IV Q  D  +    E+    E
Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374

Query: 58  TQHL-------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALAN-LSRI 108
              +       G+S   +I++      L      + +I    + G G LS AL N L+R 
Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNRA 434

Query: 109 LRDRKNMKAKVQALSMEAKASAWIIGSLP-FCVSTLVYFTSPGYMNV 154
           L +RKN      AL   ++ S  ++G +    +  LV    P  M++
Sbjct: 435 LVERKNT-----ALKRGSEISTKLLGPMTVMLIVALVILMVPALMSI 476


>gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 287

 Score = 35.0 bits (79), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  +   
Sbjct: 111 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELKDQ 170

Query: 76  MPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQA 121
           +           + +  ++GG  L + L  L+R LR+   ++++ +A
Sbjct: 171 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEA 217


>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 324

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           I  R     +DFP+ALD++   V AGL +  A+  +  +    S  V SE   ++     
Sbjct: 160 IASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLLEMRS 219

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +   ++  +     ++++  F  ++    + G ++ ++L    R+L D    + +++A
Sbjct: 220 GFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSL----RVLSDMLRTRRRMRA 275

Query: 122 LSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
               AK +  ++  L FC+  + L     P ++++
Sbjct: 276 EERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHI 310


>gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
 gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
          Length = 284

 Score = 35.0 bits (79), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 108 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 167

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
                       + +  ++GG +L   L +LS++LR+    + +++A
Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 214


>gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str.
           MC2 155]
 gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 210

 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            ALD++V  +R G    DA     G+S  PV    R V     LG  ++  +  + R   
Sbjct: 39  GALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARLGADVAAGLDDVARA-- 96

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQALSMEAKASAWII 133
             ++      ++V  +L      AL  L R       +R+   A+V+A     + +A ++
Sbjct: 97  -SQLPGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVRAAMAGPRTTALVL 155

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             LP     L        +  L+    G  LL +       G++
Sbjct: 156 AGLPLAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLL 199


>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
          Length = 277

 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 116 KAKVQALSMEAKASAWIIGSLPF 138
           +  +  LS +     ++   +PF
Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258


>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 292

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 54/121 (44%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +   + PN LD ++ SV AGL    A+A   G     +  E  R ++   +G    
Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   +     +Q++  F   +    + G  +++ L   ++  R ++  +A+ +A+ +  
Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261

Query: 127 K 127
           K
Sbjct: 262 K 262


>gi|257464504|ref|ZP_05628875.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202]
 gi|257450164|gb|EEV24207.1| pili/fimbriae biogenesis protein [Actinobacillus minor 202]
          Length = 398

 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           ++    L  +   V+A +P+  A+A+I+   +   +      +I+   LG + S ++ + 
Sbjct: 58  EEITQVLSQLAMLVKAKIPLKSALAMILENCTQIKIYLWLEALIKWIELGYAFSMALEKS 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +Y+P QE+           ++ G L   L N+++  ++++    KV+ +
Sbjct: 118 EKYIPQQEIQLIKM-----GEISGKLETILQNIAKARKEKETTLKKVKKI 162


>gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 184

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  S 68
           +
Sbjct: 176 A 176


>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
 gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
          Length = 298

 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A    + P+ALD IV S+ +GL    A+             E  R ++   +G+  
Sbjct: 145 RERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQVGMPR 204

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +   +V     +++  F   +    + G ++S  + N S  +R ++ ++A+ +A  + 
Sbjct: 205 RAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGKAQQVS 264

Query: 126 AKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
            K    ++  L FC+  +++    +PG M  +
Sbjct: 265 VK----LLFPLIFCLFPVLFVIVLAPGVMTAI 292


>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
 gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
 gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
 gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
 gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
 gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
 gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
 gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
 gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 277

 Score = 34.7 bits (78), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 116 KAKVQALSMEAKASAWIIGSLPF 138
           +  +  LS +     ++   +PF
Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258


>gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
 gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
          Length = 268

 Score = 34.7 bits (78), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/133 (18%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           EF  +     L  +L E  S       ++E+  F+ ++    + GG +   +++++ I+ 
Sbjct: 132 EFSDMRRQLSLNRTLEELWSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIG 191

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV--- 167
            +  ++ +++ ++ + +    I+  LP  +   +  TSPG+ + +     G +++ V   
Sbjct: 192 GKLQVQEEIRTMTAQKQFEQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLA 251

Query: 168 --AAAFMLIGIMV 178
             A A++L G M+
Sbjct: 252 VYAGAYVLAGRML 264


>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
 gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
          Length = 325

 Score = 34.7 bits (78), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     ++ P+AL  +V  +RAGL + + +  +       +  EFR V+     G +  E
Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-- 125
           +I  M   +  + ++    +    S  GG L++ L  +   +R+ + ++ + +A++    
Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITTMPC 221

Query: 126 -AKASAWIIGSLPFCVS 141
            A A   +I  LP  VS
Sbjct: 222 LALALGGLISGLPVGVS 238


>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 347

 Score = 34.7 bits (78), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLG 62
           +KRT       P+ALD++V    AGL V  A + +   +G++   +  EF   + +  LG
Sbjct: 186 QKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEF--ALTSIELG 243

Query: 63  L--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A+ +
Sbjct: 244 FLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEEK 303

Query: 121 ALSMEA 126
           A  + A
Sbjct: 304 AARLPA 309


>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 277

 Score = 34.7 bits (78), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM-- 115
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 116 KAKVQALSMEAKASAWIIGSLPF 138
           +  +  LS +     ++   +PF
Sbjct: 236 EESISKLSTKLTLPLFLFILIPF 258


>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
 gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
          Length = 204

 Score = 34.7 bits (78), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL-SESISR 71
           L + P  +DI++  + +GL    A+ +   + S  +  E      T  LG +   E++++
Sbjct: 61  LREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREEALNQ 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           M   + +  +  F+TV++     G  L+E L   + +LRD +
Sbjct: 121 MAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQ 162


>gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20]
          Length = 283

 Score = 34.7 bits (78), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKTR 166

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
                       + +  ++GG +L   L +LS++LR+    + +++A
Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 213


>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score = 34.7 bits (78), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  V +G+ +  A   V+V +G  S P+  E      
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-----QSQ-LGGNLSEALANLSRILRD 111
                  LS    R + Y  LQ+ +    V SV     QS+  G  L + L  +++  RD
Sbjct: 226 ------ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRD 279

Query: 112 RKNMKAKVQALSMEAK 127
            +  +A+ +A S+  K
Sbjct: 280 MRMNEAEKKAASLPPK 295


>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 297

 Score = 34.7 bits (78), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 140 VRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKN 114
             ++   + +    ++V+ F T +    +LG  + E L  ++  +R  D +N
Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQN 251


>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 987

 Score = 34.7 bits (78), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRS-EFRRVIETQHLG 62
           ++R  +  + FP++LD+++  V AG  +  ++  +  +  +  P  + E+  V      G
Sbjct: 829 QERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAYEMKAG 888

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                 +  M     + +V+ F TV+    Q G +++EAL   +  +RD++ M+A+ +A 
Sbjct: 889 KDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRAEEKAN 948

Query: 123 SMEAK 127
           ++  K
Sbjct: 949 TLPTK 953


>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 288

 Score = 34.7 bits (78), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +K   K+R    L   P  +D++  S+ AGL +S A+   V +S+  P+  E  RV+   
Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +  +++      +    ++ F + +    + G +L   L   +   R  + ++A  
Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRA-- 248

Query: 120 QALSMEAKASAWIIGSLPFCV 140
           + L+MEA     ++G L F +
Sbjct: 249 EKLAMEAPVK--MLGPLIFFI 267


>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score = 34.7 bits (78), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           +K+ I+KR       FP+ALD+++  + +G+ +  A   V++ +G  S P+  EF     
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASAWII 133
           + +A ++  K +  +I
Sbjct: 286 EKKAAALPPKLTVPMI 301


>gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
 gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
          Length = 412

 Score = 34.7 bits (78), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG+P+++++  +  Q  +P   +F+ ++      ++   S++  ++  P      F +
Sbjct: 86  LRAGIPLAESLGALFEQIENP---KFQAIVGEVRTAVNEGSSLADALQKHPRVFDELFVS 142

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           ++    +L GNL E L  L+  +     +++KVQ 
Sbjct: 143 MVRA-GELAGNLDEVLERLAEFMESSAQLRSKVQG 176


>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 199

 Score = 34.7 bits (78), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 19/123 (15%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSE------ 67
           FP+ALD++V  V AGL V  A+  +  +  +S P  +E         +GL+ +E      
Sbjct: 55  FPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAE--------EIGLTAAELAFLGD 106

Query: 68  ---SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              +   +     L +V   ST +    + G  +++AL  LS+  R+ +   A+ +A S+
Sbjct: 107 RRQAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASL 166

Query: 125 EAK 127
            AK
Sbjct: 167 PAK 169


>gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 403

 Score = 34.7 bits (78), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 29  AGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P+S A+AV    + D P+R    R+ E+ H G +L E++  M    P   V    T 
Sbjct: 81  AGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPGVFPNLLVYMIQT- 139

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                +  G L   L  ++      + M  KV+A
Sbjct: 140 ----GESSGKLDVMLGTMAEYYDREEEMNGKVRA 169


>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 204

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 28  RAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFF 84
            +G+ V  A+ V+  +  D  PV SE  RV+  +   GL L E + +    + + E+S  
Sbjct: 71  ESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDT 130

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             +++     GG   ++L  L +++ DR+  + +     + AK S  ++  L    + L+
Sbjct: 131 CVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFL--FPALLI 188

Query: 145 YFTSPGYMNV 154
               PG+M +
Sbjct: 189 VLAGPGFMAI 198


>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 294

 Score = 34.7 bits (78), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R      +  N LD ++ SV AGL    A+A        P+  E  R ++   +G S 
Sbjct: 141 KERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQVGRSR 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            E+   +     + E+  F   I      G  +S  L   ++++R ++  +A+ +A+ +
Sbjct: 201 REAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEKAMKL 259


>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 295

 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 29  AGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFFS 85
           +G+ V  A+ V+  +  D  PV SE  RV+  +   GL L E + +M   + + E+S   
Sbjct: 162 SGMAVEQALRVLSNEGKDLLPVLSEEIRVVLARVDSGLELGEELRKMAALLDVDELSDTC 221

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLV 144
            +++     GG   ++L  L +++ DR+  + +     + AK S   ++   P   + L+
Sbjct: 222 IILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMVFLFP---ALLI 278

Query: 145 YFTSPGYMNV 154
               PG++ +
Sbjct: 279 VLAGPGFIAI 288


>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 17/166 (10%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHL 61
           I KR    +  FP+ALD+++  V AG+ +  A+A +   +G SS  +  E         L
Sbjct: 169 ITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEEL------SLL 222

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISV-----QSQLGGN-LSEALANLSRILRDRKNM 115
              LS    R + Y  L + +    V SV     Q++  G  LS AL  +++  RD +  
Sbjct: 223 SAELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLS 282

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            A+ +A ++ A+ +  +I  L F     +    P  +N++    +G
Sbjct: 283 AAEKKAAALPAQLTVPMI--LFFLPVLFIVILGPAILNIMDTMAKG 326


>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 277

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE--T 58
           +K+ + KRT   L   P  +DI    V++G+ + +++     Q    + ++   ++   T
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNY-TTQKFQTINTDLCLIMSKVT 175

Query: 59  QHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           +   ++ L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+
Sbjct: 176 KRAEINGLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMRE 229


>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
 gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
          Length = 308

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           ++ LIK R  +     P+ALD++V  V AGL +  A   V+  + +++  V SEF     
Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + ++   + ++    + G ++++AL   S  +R +++  A
Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + QA     K            +  LV F  PG   VL+         G AA  M+ G++
Sbjct: 267 EEQAAMTAVK-----------MIFPLVLFIFPGIFVVLV---------GPAAIMMINGLL 306

Query: 178 V 178
            
Sbjct: 307 T 307


>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEF 52
           +K+ I+KR       FP+ALD+++  + +G+ +  A   V++ +G  S P+  EF
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEF 220


>gi|123443546|ref|YP_001007519.1| general secretion pathway protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090507|emb|CAL13376.1| general secretion pathway protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 402

 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 27  VRAGLPVSDAVAVIVGQSS----DPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81
           V A +P+ +A+A+I  QS+    D V  + R RV+E    G SLS+S+S+     P    
Sbjct: 76  VNAAIPLDEALALIENQSTKSKVDSVIHKIRKRVLE----GHSLSDSLSQF----PAIFN 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           S + ++I+   +L G+L   L+NL+  +   + +K+K+
Sbjct: 128 SLYRSMIAA-GELSGHLGLVLSNLADHIEQARKVKSKI 164


>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIETQHL 61
           I KR       FP+ALD+++  V +G+ +  A   VA+ +G  S P+  EF   + T  L
Sbjct: 170 ISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEF--TLTTAEL 227

Query: 62  GLSLSESIS--RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  ++   + +   L+ V      +    + G  L ++L  +++  RD +  +A+ 
Sbjct: 228 SYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEK 287

Query: 120 QALSMEAKASAWII 133
           +A ++  K +  +I
Sbjct: 288 KAAALPPKLTVPMI 301


>gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 286

 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E      S S S+ R+   
Sbjct: 109 WPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRATGSFSASLDRLADD 168

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120
           +           + +  ++GG +L   L  LS  LR+    +A+++
Sbjct: 169 LADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELE 214


>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 339

 Score = 34.3 bits (77), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVIET 58
           +LI KRT       P+ALD++V    AGL +  A   VA  +G++   +  EF    IE 
Sbjct: 178 NLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAIEL 237

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             L    S +   +   + L+ +    T +    + G  L+ AL  LS   R+ + M+A+
Sbjct: 238 SFLTERRS-AFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAE 296

Query: 119 VQALSMEA 126
            +A  + A
Sbjct: 297 EKAARLPA 304


>gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 283

 Score = 34.3 bits (77), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 166

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
                       + +  ++GG +L   L +LS++LR+    + +++A
Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEA 213


>gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
 gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
          Length = 353

 Score = 34.3 bits (77), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 43/101 (42%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R A+     P  L  +   + AG+ +++A+  +       +  EF  +I     G S 
Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS 106
            E+++R    M  + VS     +    + GGNLS  L  L+
Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLA 271


>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
           2246]
          Length = 307

 Score = 34.3 bits (77), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQ-HL 61
           I+KR     +  P+ALDI+V SV  G  ++ A+     +  D  PV      V++ +  L
Sbjct: 151 IEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQREVQL 210

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLS+ ++     R   + E    +  +    + G ++ +AL    R   D      +  A
Sbjct: 211 GLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKAL----RTFADSARQDRQAWA 266

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
             +  KAS  ++  +  C+   ++
Sbjct: 267 EEVAQKASVKVVFPMLLCIFPAIF 290


>gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 284

 Score = 34.3 bits (77), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R A   + +P+ +D +  ++RAGL +++A+  +  +  +P+R  FR        G S 
Sbjct: 98  KRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYRAGGSF 157

Query: 66  SESISRMVRYM--PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             S+  +   +  P+ +   F  +   +   G +L   L  LS  LR+    +++++A  
Sbjct: 158 ETSLDLLKERLADPVAD-RIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSELEARQ 216

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                +A I  + P+ V  LV   +     +  N P G +LL    A ++I ++  RLM+
Sbjct: 217 SWTVNAARIAVAAPWIV--LVLLAAQPNALLAYNSPSGWILL---LAGLIISVVCYRLML 271

Query: 184 N 184
            
Sbjct: 272 R 272


>gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M]
 gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 267

 Score = 34.3 bits (77), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    R   L
Sbjct: 97  ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RD---RKNMKAKVQALSMEAKASAWIIG 134
              S +   ++V  QL  +   A+A L R   RD   R+   AKV A    A+ASA I+ 
Sbjct: 157 P--SHWER-LAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILA 213

Query: 135 SLP 137
            LP
Sbjct: 214 GLP 216


>gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99]
 gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
           Agy99]
          Length = 264

 Score = 34.3 bits (77), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    R   L
Sbjct: 97  ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RD---RKNMKAKVQALSMEAKASAWIIG 134
                    ++V  QL  +   A+A L R   RD   R+   AKV A    A+ASA I+ 
Sbjct: 157 PA---HWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILA 213

Query: 135 SLP 137
            LP
Sbjct: 214 GLP 216


>gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
 gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
          Length = 289

 Score = 34.3 bits (77), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +P+A+D I  +VRAG+ + +AVA +  +  + +R  F+   +   +     + + R+ 
Sbjct: 111 DLWPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLK 170

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV---QALSMEAK-- 127
             +           + +  ++GG +L   L  LS  LR+    ++++   Q+ ++ A   
Sbjct: 171 ERLSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARL 230

Query: 128 --ASAWII 133
             A+ WI+
Sbjct: 231 AVAAPWIV 238


>gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 303

 Score = 34.3 bits (77), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I KR  +   + P+A   +  S+RAG+  S+A+  +       +  EF+RV+     G S
Sbjct: 88  ISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKGRS 147

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALA----NLSRILRDRKNMKA 117
             E++  M        V + S +I +++ + G  +S+ L     ++  ILR ++  KA
Sbjct: 148 TVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205


>gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
 gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
          Length = 271

 Score = 34.3 bits (77), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
           +++ R  KF       L  ++  + +G P+ +    +     +P V  EFRR++   + G
Sbjct: 87  MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRIL-RDRKNMKAKVQ 120
             +  +I R +  +P +  +   +++     + G++++ LA  L  I+ R++   K++ Q
Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206

Query: 121 ALSM 124
           ALS+
Sbjct: 207 ALSL 210


>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 323

 Score = 34.3 bits (77), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFR-RVI 56
           + + I  R       FP+ALD+++  V +G+ +  A   V   +G  S P+  EF     
Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E  +L    +  ++   R   L+ V   STV+    + G  L +AL   ++  RD + M+
Sbjct: 224 ELSYLPDRRTAYLNLAAR-TGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMME 282

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+ +A ++  K +  +I  + F    +V   SP  + V+
Sbjct: 283 AEKKAAALPPKLTVPMI--VFFLPVLMVVVLSPAAIQVM 319


>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein
          [Rhodococcus erythropolis SK121]
 gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein
          [Rhodococcus erythropolis SK121]
          Length = 189

 Score = 34.3 bits (77), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 20 LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
          LD++   +RAGLPVS A+  +   +  P+    RRV +   LG
Sbjct: 50 LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALG 92


>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 318

 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIETQHL 61
           I +R     D+ P+ALD++V  V +G+ +  AV  +  +  +S P + SEF+ +      
Sbjct: 158 INRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTLELRA 217

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  +++  +   + L +++  ++++      G ++   L   S  +R +++ +A+ +A
Sbjct: 218 GKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRAEEKA 277

Query: 122 LSM 124
             M
Sbjct: 278 AKM 280


>gi|73667452|ref|YP_303468.1| type IV secretion system protein VirB5 [Ehrlichia canis str. Jake]
 gi|72394593|gb|AAZ68870.1| CagE, TrbE, VirB family component of typeIV transporter system
           [Ehrlichia canis str. Jake]
          Length = 791

 Score = 34.3 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 52  FRRVIETQHLGLSLSESISRMVRY---MPLQEVSFFSTVISVQSQLGGNLSEALAN--LS 106
            +R++  +++   +  SI+++V +   +P++  +  S +    S LG N+++ + N   +
Sbjct: 528 LQRMLNVKNITEEMKSSINQVVDHIFTLPIESRTI-SNIADHISGLGKNVNQWVNNGEFA 586

Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +L++  N+  K + L +       I+ S P C S ++Y+    ++N+LIN
Sbjct: 587 HLLKEDSNIDWKAKVLGLNVG----IVFSKPQCASVIIYY----FLNMLIN 629


>gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2]
 gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 298

 Score = 33.9 bits (76), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESI 69
           KF  + P AL ++V S+ +G  V +A+  ++      V   F +++       LS  +++
Sbjct: 84  KFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFEDAM 143

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++    A 
Sbjct: 144 ILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAV 203

Query: 130 AWII--GSLP 137
             II  G +P
Sbjct: 204 GLIILCGVIP 213


>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 295

 Score = 33.9 bits (76), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 46/106 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 VRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
              +   + +    ++V+ F T +    +LG  + E L  ++  +R
Sbjct: 198 RRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMR 243


>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
           JL354]
          Length = 342

 Score = 33.9 bits (76), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRV-IETQHL 61
           KKRT       P+ALD++V    AGL +  A   VA  +G++   +  EF    IE   L
Sbjct: 187 KKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSFL 246

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +   +   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A+ +A
Sbjct: 247 N-NRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKA 305

Query: 122 LSMEA 126
             + A
Sbjct: 306 ARLPA 310


Searching..................................................done


Results from round 2




>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 325

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 110/183 (60%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR  K     P+A+D+I R++RAG   + A+ ++  +  +P+  EF    E  + G+S
Sbjct: 143 RRKRLKKLEAQLPDAVDMIARALRAGHSFASALGMVGQEIKEPMGPEFHTTFEEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+++ + + +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ LS 
Sbjct: 203 LDEALTNLAKRVPVNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAWI+G LPFC + ++   +P +M VL  DP G  ++G+A   M++G++ MR +I 
Sbjct: 263 EGRLSAWILGLLPFCTAGMILLVNPDFMKVLWTDPMGLKMIGLALFNMVMGLIWMRKIIR 322

Query: 185 FDV 187
             V
Sbjct: 323 IRV 325


>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 187

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH
Sbjct: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ
Sbjct: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR
Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180

Query: 181 LMINFDV 187
           LMINFDV
Sbjct: 181 LMINFDV 187


>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 325

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL  KR  +     P+A+D+I R++RAG   S A++++  +   P+  EFR   E  + G
Sbjct: 141 HLRAKRLKQLEAQLPDAVDMISRALRAGHSFSGALSMVGQEMKAPIGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAMRVPVADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAW++G LPF  + ++   +PG+MNVL  DP G  ++G A   M  G++ MR +
Sbjct: 261 SAEGKLSAWVLGLLPFGTAGMILVINPGFMNVLWEDPLGLRMIGGALVSMTFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
 gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
          Length = 323

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/186 (52%), Positives = 136/186 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL+  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 137 LSYLKRRREKQFLEALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI +Q++ GGNLSEAL NLS++LRDRK M+AK+Q
Sbjct: 197 IGMPLGEACMRLYERMPLPEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LP  V  +VY  SP Y+++L   P G  +L   A +M  GI+VM+
Sbjct: 257 AMSMEAKASAAIIGALPPVVMIIVYIMSPDYISLLWTHPTGRFMLACCAVWMTAGILVMK 316

Query: 181 LMINFD 186
            MINFD
Sbjct: 317 KMINFD 322


>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 328

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 142/187 (75%), Positives = 174/187 (93%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++LIKKRTAKFL++FPNALDIIVRSVR+GLPVSDA+++IVGQSSDPVRSEFRRV+E QH
Sbjct: 142 LQYLIKKRTAKFLNEFPNALDIIVRSVRSGLPVSDAISIIVGQSSDPVRSEFRRVVEAQH 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+SES++RMVRYMPLQEVSFFSTVIS+Q+Q GGNLSEAL+NLS ILR+RK MK KVQ
Sbjct: 202 LGLSVSESVARMVRYMPLQEVSFFSTVISIQAQSGGNLSEALSNLSGILRERKKMKGKVQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+MEAK+SAWIIGSLPF VS+LV+FTSPGY+++L  D RGH++LG+AA  M++G ++MR
Sbjct: 262 ALAMEAKSSAWIIGSLPFFVSSLVHFTSPGYIDILFLDSRGHIILGIAAFLMVLGAVIMR 321

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 322 TMINFDM 328


>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KF++  P+A+D+IVR ++AGLP+ D++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKKRREKKFINALPDAVDVIVRGIKAGLPLFDSLKVVAADSPEPLKSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGCVVWMSAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 324

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 129/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P+R+EF  +++TQ 
Sbjct: 138 LSFLKKRRERNFLKALPDAVDVIVRGIKAGLPLYDSIKVVAADAPEPLRTEFLTILDTQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACGRLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G M+L     +M IG+ VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMFLVYLTTPDYIALLWTHPTGQMMLAGCVLWMSIGVFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 324

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  KFL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKKFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 334

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 152/187 (81%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI++R  KFL +FPNALD++VRS+++GLP++DA+ +I   + +PV++EFRRV++ Q 
Sbjct: 148 VSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+++ E+  RM   MPLQEVSFF+ VI++QSQ GGNLSEAL+NLS++LR+R+ MKAKV 
Sbjct: 208 LGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVS 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+ VL  DPRGHM+LG +A +M IGI VMR
Sbjct: 268 ALSMEAKASAVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 NMINFDI 334


>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI+VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
 gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
          Length = 336

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 105/185 (56%), Positives = 148/185 (80%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L  +R   FL +FPNALDI+VRS+++GLP++DA+ +I  +  +PVR+EF+R++++Q +G
Sbjct: 152 YLRNRRLKAFLSEFPNALDIMVRSIKSGLPLNDAIRMISAEGQEPVRTEFKRIVDSQQMG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +++ E+ +R+   +PL E +FFS VI++Q+Q GGNLSEAL NLSR+LRDRK MKAK+ AL
Sbjct: 212 MNIPEACARLYSRIPLSEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+ LVY TSP Y+ +L  D RGH++LG +A +M IGI+VMR M
Sbjct: 272 SMEAKASAAIIGALPFIVALLVYLTSPDYIMILFTDTRGHLILGASAIWMSIGILVMRNM 331

Query: 183 INFDV 187
           INFD+
Sbjct: 332 INFDI 336


>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR  +     P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  + G
Sbjct: 141 RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ L
Sbjct: 201 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + L+   +PG+M VL  DP G  ++G A   M+ G++ MR +
Sbjct: 261 SAEGRLSAWILGLLPFGTAGLIMVVNPGFMRVLWEDPIGWRMVGAAMTSMIFGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 139/186 (74%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFLD  P+A+D+IVR V+AGLP+ D++ V+V  S +P+RSEFR +IETQ 
Sbjct: 139 LNFLKKRREKKFLDALPDAVDVIVRGVKAGLPLFDSLKVVVNDSPEPLRSEFRAIIETQS 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+  R+   MPL E +FF  V+ +Q + GGNLSEAL NLS++LRDRK MKAK+Q
Sbjct: 199 IGMPLGEACMRLYERMPLPEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  +VYF SP Y+++L  +P G ++L V+ A+M  G+M+M+
Sbjct: 259 AMSMEAKASAGIIGSLPPAVMMIVYFMSPDYISLLWTEPAGRVMLAVSGAWMFAGVMIMK 318

Query: 181 LMINFD 186
            MINFD
Sbjct: 319 KMINFD 324


>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 95/186 (51%), Positives = 134/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  +FL   P+A+DIIVR ++AGLP+ D++ ++   S +P+RSEF  +IETQ 
Sbjct: 138 LGYLKRRREKRFLAALPDAVDIIVRGIKAGLPLFDSIKMVAADSPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYERMPIPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPIIVMMLVYVTTPDYISLLWTHPTGRILLAASALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
 gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  KFL   P+A+D+IVR ++AGLP+ +++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADAPEPLRSEFLAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  V+++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVVAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M +GI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLVGCVVWMSMGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 326

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/187 (52%), Positives = 135/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KF+++FP ++D+I+R V+AGLPV+D   VI  +  +PVR EFRR+IE+Q 
Sbjct: 140 LSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCFRVIASEGQEPVRGEFRRIIESQA 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E++ R    +P+ E SFFS VI++Q + GGNLSEAL NLSR+LRDRK MK KV+
Sbjct: 200 IGLSVGEAVERFAERVPVPEASFFSIVINIQQKSGGNLSEALGNLSRVLRDRKKMKGKVK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   VY T+P YM VL     G +++     +M IG+ +MR
Sbjct: 260 AMSSEAKASAGIIGSLPFLVGGAVYLTTPSYMMVLFTTNIGKIIIACGLLWMAIGVFIMR 319

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 320 KMINFDI 326


>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 340

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/186 (52%), Positives = 135/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R +KFL   P+A+D+IVR ++AGLP+ +++ V+   S +P+RSEF  +IETQ 
Sbjct: 154 LSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLRSEFLAIIETQA 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MPL E +FF  VIS+Q + GGNLSEAL NLS++LRDRK M+ K+Q
Sbjct: 214 IGMPLGEACSRLYDRMPLPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMREKIQ 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+++L   P G ++L     +M +GIMVM+
Sbjct: 274 AMSMEAKASAAIIGSLPPIVMFLVYLTTPHYISLLWTHPTGQLMLVGCVVWMSVGIMVMK 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 KMINFD 339


>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 325

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  +     P+A D+I R++RAG     A+ ++  +  +P+  EF  V +  +
Sbjct: 139 LCRKRTKRVLQLERQLPDAADLIARALRAGHSFPAALGMVGEELPNPLGGEFALVFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+S+++  MV  +P++++ +F   + +Q + GGNL+E L +++ I+R+R  +  KV+
Sbjct: 199 YGVSMSDALLNMVNRVPVEDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAW++G LPF +  L+   +PGY++V   DP G  + GVA A ML GI+ MR
Sbjct: 259 VLSAEGRLSAWVLGVLPFAILGLLSVLNPGYISVFWKDPAGPQIAGVAIAMMLFGILWMR 318

Query: 181 LMINFDV 187
            ++   V
Sbjct: 319 KVVRIRV 325


>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
 gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
          Length = 305

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F    P ALD I RS+RAG  +S A+ +I  +  DP+  EF+ V +  +
Sbjct: 119 LSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMIGKEFPDPLGGEFKTVFDEMN 178

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+ + +   +   ++SFF   + +Q + GGNL+E L  L+  +R+R  ++ KV+
Sbjct: 179 FGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGNLAELLGGLATTIRERFKLRGKVR 238

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++GS+PF  +T++   +P Y+  L N P+GH LL +A   ML+G+ V+ 
Sbjct: 239 TLSSEGRISALVLGSMPFVFATIISLINPRYILPLFNTPQGHTLLYIAGGLMLVGMYVLN 298

Query: 181 LMINFDV 187
            M+   V
Sbjct: 299 NMVKIKV 305


>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 335

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 111/185 (60%), Positives = 153/185 (82%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIK+R  KFL++FPNALD+I RS+R+GLP++DAV ++  ++ +PVR+EFRRV+ETQ +G
Sbjct: 151 FLIKRRQNKFLEEFPNALDLITRSIRSGLPLNDAVRLVASEAREPVRTEFRRVVETQQVG 210

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS++++ +RM  +MPLQEV+FFS VI++Q+Q GGNLSEAL NL+++LR+RK MKAKV AL
Sbjct: 211 LSMTDACARMNNHMPLQEVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVAL 270

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V  LVY TSP YM +L  DPRGH+++ +A  +M  G+++MR M
Sbjct: 271 SMEAKASAVIIGALPFIVMLLVYLTSPQYMMILFTDPRGHLIMLLAGIWMAFGVIIMRQM 330

Query: 183 INFDV 187
           +NFD+
Sbjct: 331 VNFDI 335


>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 131/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ D++ V+   + +P++SEF  ++ETQ 
Sbjct: 138 LNFLKKRREKNFLKALPDAVDVIVRGIKAGLPLFDSLKVVAADAPEPLKSEFLAILETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MPL E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+++L   P G ++L     +M IGI VM+
Sbjct: 258 AMSMEAKASAGIIGSLPPIVMLLVYLSTPDYISLLWTHPTGQLMLAGCVLWMAIGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 QMINFD 323


>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 135/186 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  KFL   P+A+D+IVR ++AGLP+ D++ V+   + +P+RSEF  +IETQ 
Sbjct: 138 LGFLKRRREKKFLAALPDAVDVIVRGIKAGLPLFDSIKVVAADAPEPLRSEFNAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L+++ +R+   MPL E +FF  VI++Q + GGNLSEAL+NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLADACARLYERMPLPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LP  V  LVY T+P Y+++L   P G +LL  +A +M  GI VM+
Sbjct: 258 AMSMEAKASATIIGALPLIVMLLVYLTTPDYISLLWTHPTGRLLLAGSALWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 322

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +   
Sbjct: 136 LLKLADRRRRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGDPIGYEFKIVFDEIG 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+I R+   +   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++
Sbjct: 196 FGIPFKEAIGRLAERVQSNDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +AS W++GS+PF +  ++   +P Y+  L   P+G+ ++ + A  M +G +V++
Sbjct: 256 ILSSEGRASGWVLGSMPFVLMAVLSLINPEYIAQLWTTPQGNTMMMIGAGLMSVGFVVLK 315

Query: 181 LMINFDV 187
            ++   V
Sbjct: 316 RIVQIKV 322


>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 325

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 104/181 (57%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +      +A+D+I R++RAG   S A+ ++  +   P+  EFR   E  + G++L 
Sbjct: 145 KRIKRMEAQLADAVDMISRALRAGHSFSGALGMVGQEMKAPIGPEFRTTFEEINYGVALD 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  +  K++ LS E 
Sbjct: 205 EAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SAW++G LPF  + L+   +PG+M VL  DP G  ++G A   M  G++ MR +I   
Sbjct: 265 KMSAWVLGLLPFGTAGLILVVNPGFMKVLWEDPIGLRMIGGALVSMTFGVLWMRKIIRIR 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
 gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
          Length = 337

 Score =  200 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 108/187 (57%), Positives = 144/187 (77%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q 
Sbjct: 151 VSFRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKAEFRRIVDSQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ
Sbjct: 211 MGISIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG AA +M IGI+VMR
Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPDYLMPLFNTSVGNLILGCAAVWMSIGILVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 KMMNFEV 337


>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 327

 Score =  200 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  KKR  KF +   ++L II  S++AG     A+ ++  +   P+  E  RV++  +
Sbjct: 141 LKYSQKKRLDKFNEQINDSLTIISNSLKAGYSFFQALEMVAKEMPPPISEEITRVLKEMN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  ++++ +   +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K ++Q
Sbjct: 201 LGASPQDALTALTDRVESDDLELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQ 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  +++  SP YM  L   P G  ++GV     ++G ++++
Sbjct: 261 TLTAQGRMSGLIIGLLPVGLGGMLFLISPDYMAPLFGHPLGQTMIGVGIISQILGAVLIK 320

Query: 181 LMINFDV 187
            +I+ +V
Sbjct: 321 KIIDIEV 327


>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
           assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 336

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 154/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PV++EFRRV+E+Q +GL
Sbjct: 153 MVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVKTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ ++ +RM++ +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+RK MKAKV ALS
Sbjct: 213 NVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERKKMKAKVGALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPEYMMVLFTDPRGHLIMGASAVWMSIGIFVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
          Length = 335

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 337

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PV++EFRR++++Q 
Sbjct: 151 VSFRRSRRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANEAPEPVKTEFRRIVDSQQ 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKVQ
Sbjct: 211 MGLSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR
Sbjct: 271 ALSMEAKASAAIIGALPFIVAFLVYLSSPSYLMPLFNTSVGNLILGCSAVWMSIGILVMR 330

Query: 181 LMINFDV 187
            M+NF+V
Sbjct: 331 KMMNFEV 337


>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 335

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISAVWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 325

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR  +     P+A+D+I R++RAG   S A+ ++  +   P+  EFR   E  + G
Sbjct: 141 RLRAKRIQQMESQLPDAVDMIARALRAGHSFSGALGMVGQEMKAPIAPEFRTTFEEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  ++R+R  + AK++ L
Sbjct: 201 IALDEAMTNLAIRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LPF    ++   +P +M VL  DP G  ++G A   M++G++ MR +
Sbjct: 261 SAEGRMSAWVLGLLPFATGGMILVVNPDFMKVLWEDPIGLKMVGAAVGMMMLGVLWMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 336

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 152/184 (82%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            IK+R  KFLD+FPNALD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL
Sbjct: 153 RIKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVNALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G +A +M IGI +MR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPAYMAILFTDPRGHLIMGASAVWMSIGIWMMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 108/183 (59%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R   F D  P ALD I R++RAG  ++ A+ ++  +  DP+  EF+ V +    G+ 
Sbjct: 150 AKQRRKVFGDKLPEALDYISRAMRAGHSLTSAIGMVGKELPDPIGYEFKTVFDEISFGIP 209

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++I  +   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+ LS 
Sbjct: 210 FKDAIGHLADRIQSNDLNFFVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSS 269

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E +ASAWI+G++PF  + ++   +PGY++VL + P+G  L+ +    M +GI V+  ++ 
Sbjct: 270 EGRASAWILGTMPFVFAGILMLINPGYISVLWSTPQGQNLMFIGCGLMAVGIFVLSRIVQ 329

Query: 185 FDV 187
             V
Sbjct: 330 IKV 332


>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
 gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
          Length = 324

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/186 (48%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R  +FL+  P+A+D+IVR ++AGLP+ D++ V+   S +P+++EF  +IETQ 
Sbjct: 138 LGFLKKRREKRFLNALPDAVDVIVRGIKAGLPLFDSIKVVAADSPEPLKTEFNAIIETQT 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPIGEACARLYDRMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L     +M  GI+VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPIVMLLVYMSTPDYIALLWTHPTGRLMLAGCVVWMAAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
 gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
          Length = 335

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 154/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRR+IE Q 
Sbjct: 149 LGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGTEGTEPVKSEFRRIIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
           13177]
 gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 325

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGMLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 335

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 114/185 (61%), Positives = 153/185 (82%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q +G
Sbjct: 151 FLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQVG 210

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ ++ +RM  +MPLQEVSFF+ VI++QSQ GGNLSEA+ NLS+++R+R+ MKAKV AL
Sbjct: 211 LSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSEAIGNLSKVIRERRKMKAKVSAL 270

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M
Sbjct: 271 SMEAKASAVIIGALPFIVATLVYLTSPSYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330

Query: 183 INFDV 187
           +NFD+
Sbjct: 331 VNFDI 335


>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 325

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              +KR  +     P+ALD++ R++RAG     A+ ++  + +DP+  EFR   +  + G
Sbjct: 141 RAKRKRLDRIEHQLPDALDLMGRALRAGHAFPTALKMVGDEMNDPLAGEFRIAFDEVNFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +++ +++  M   +P  ++ +F   + +Q + GGNLSE L ++S I+RDR  +  +V+ L
Sbjct: 201 IAMPDALMNMATRVPSTDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAW++  LPF  + ++  T+P ++ VL  DP G  +L  A   M +GI+VMR +
Sbjct: 261 SAEGKMSAWVLSLLPFGAAFMIQLTNPKFLEVLYTDPAGRKMLAAAIVMMALGILVMRKI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
 gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
 gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
 gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
 gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
 gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 325

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
 gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
 gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
 gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
 gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
 gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 325

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 201 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
          Length = 335

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/187 (61%), Positives = 155/187 (82%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEFRRVIE Q 
Sbjct: 149 IGFLIKRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFRRVIEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV 
Sbjct: 209 VGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVS 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH ++G +A +M IGI+VMR
Sbjct: 269 ALSMEAKASAVIIGALPFIVATLVYLTSPNYMIVLFTDPRGHFIMGASAVWMSIGILVMR 328

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 329 NMVNFDI 335


>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
 gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 336

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 337

 Score =  197 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 107/185 (57%), Positives = 142/185 (76%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R   FL++FPNALDIIVR+V++GLP++DAV +I  +S +PV++EFRR++++Q +G
Sbjct: 153 FRRARRVKAFLNEFPNALDIIVRAVKSGLPLNDAVRLIANESPEPVKTEFRRIVDSQQMG 212

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ ++  RM   MP  E SFF  VI +QSQ GGNLSEAL NLSR+LRDRK MKAKV AL
Sbjct: 213 LSIPDATLRMPETMPCTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAAL 272

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+ LVY +SP Y+  L N   G+++LG +A +M IGI+VMR M
Sbjct: 273 SMEAKASAAIIGALPFIVAFLVYLSSPAYLMPLFNTSVGNLILGCSAVWMSIGILVMRKM 332

Query: 183 INFDV 187
           +NF+V
Sbjct: 333 MNFEV 337


>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 330

 Score =  197 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 266 SAEGKLSALILTLLPFGTAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325

Query: 183 INFDV 187
           I   V
Sbjct: 326 IRIRV 330


>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 336

 Score =  197 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/184 (60%), Positives = 153/184 (83%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K+R  KFLD+FPN+LD++VRS+++GLP++DA+ +I     +PVR+EFRRV+E+Q +GL
Sbjct: 153 MVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++ E+ +RM+  +PL EV+FF+ VI++Q+Q GGNLSEAL NLS++LR+R+ MKAKV ALS
Sbjct: 213 NVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVGALS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           MEAKASA IIG+LPF V+TLVY TSP YM VL  DPRGH+++G +A +M IGI VMR MI
Sbjct: 273 MEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMI 332

Query: 184 NFDV 187
           NFD+
Sbjct: 333 NFDI 336


>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 335

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 98/187 (52%), Positives = 146/187 (78%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR   F + FP A+D+IVR V+AGLP++D +  +V    DPV SEF++V+E Q 
Sbjct: 149 LSNRRKKRINDFSNSFPTAIDLIVRGVKAGLPLNDTLRTVVSDVPDPVSSEFQKVVEAQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L ++  R+ + +PL E +FF+ VI++QSQ GGNLSEAL NLSR+LR+RK M+ K+Q
Sbjct: 209 MGVTLGDACDRLYKQVPLPETNFFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQ 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGS+P  V++++Y TSP Y+NVL++DPRG+++L  +A +MLIG+++M+
Sbjct: 269 AVSMEAKASASIIGSIPVLVASMIYMTSPDYLNVLLHDPRGNIVLIASAVWMLIGVLIMK 328

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 329 KMINFDI 335


>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 329

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  +
Sbjct: 143 LQRKRLQRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIAGEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+
Sbjct: 203 YGTSLHQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS + + SAWI+G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 263 VLSADGRMSAWILGLMPFGLAALLNLMNPEFMHPLWTDPIGISILKWLAALMVIGLLLLR 322

Query: 181 LMINFDV 187
            +    V
Sbjct: 323 RIARIRV 329


>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 335

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 114/185 (61%), Positives = 153/185 (82%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIK+R  KFL++ PNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q +G
Sbjct: 151 FLIKRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVG 210

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKVQAL
Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQAL 270

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M
Sbjct: 271 SMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330

Query: 183 INFDV 187
           +NFD+
Sbjct: 331 VNFDI 335


>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
          Length = 330

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 109/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 146 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +   +P+ ++ +F   + +Q + GGNL+E L  +++++R+R  +  K++ L
Sbjct: 206 VSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIAQLIRERFKLFDKIRVL 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  DP G +L+GV  A M  GI+ MR +
Sbjct: 266 SAEGKLSALILTLLPFATAALLSIMNPDFISVLWEDPAGVLLVGVTIASMAFGILWMRHI 325

Query: 183 INFDV 187
           I   V
Sbjct: 326 IRIRV 330


>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
          Length = 325

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 105/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P+  D I R++RAG   S A++++ G+ ++P+  EFR   +  + G
Sbjct: 141 HCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P ++ VL  DP G +L+G+  A M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAGLLSVMNPDFIAVLWQDPAGILLVGMTIASMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 339

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K R  KF    P AL ++ RS++AG      + ++  +  +P+  EF +  +  +
Sbjct: 153 LHMKKKYRLKKFEKQLPEALGLMARSLKAGHSFPSTMQLVADEMPNPIGIEFFKTFKEFN 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL +S +++ + + + LQ++ FF T I++Q + GGNL E L  ++ ++RDR  +   ++
Sbjct: 213 YGLDMSSALANLQKRIDLQDLKFFVTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + S  I+  LP  ++ ++YF +  YM +LI  P G M++GVA    L+G +++ 
Sbjct: 273 AITSEGRFSGLILTCLPPGMAIILYFLNKKYMLLLITHPWGKMMVGVALTMQLLGYLMIH 332

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 333 KIVNIKV 339


>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 325

 Score =  197 bits (501), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  KR AKF  + PNA+D++VR +R G+PV D   ++  ++ +PVRSEFR V+ETQ 
Sbjct: 139 LRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSREAEEPVRSEFRTVVETQA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLSL E+ +R+   +P  EV+FF+ VI++Q Q GGNLSEAL NLS +LRDR  M+ KVQ
Sbjct: 199 MGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKMRGKVQ 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA II  LPF V+ +   TSP Y+++L     G + L  AA +M IGI  ++
Sbjct: 259 AMSMEAKASASIIACLPFAVAGITALTSPDYISLLWTTDTGKIALVGAAIWMSIGIFTIK 318

Query: 181 LMINFD 186
            MI F+
Sbjct: 319 KMIAFE 324


>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 335

 Score =  196 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 114/185 (61%), Positives = 153/185 (82%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIK+R  KFL++FPNALD+I RS+++GLP++DA+ +I  + ++PV+SEF RVIE Q +G
Sbjct: 151 FLIKRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIATEGTEPVKSEFLRVIEAQQVG 210

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ ++ +RM  +MPLQEV+FF+ VI++QSQ GGNLSEA+ NLS++LR+R+ MKAKV AL
Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH ++GV+A +M IGI VMR M
Sbjct: 271 SMEAKASAVIIGALPFIVATLVYMTSPNYMMILFTDPRGHFIMGVSAIWMSIGIFVMRNM 330

Query: 183 INFDV 187
           +NFD+
Sbjct: 331 VNFDI 335


>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 324

 Score =  196 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 128/186 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKTRREKAFLRALPDAVDVIVRGIKAGLPLFESIKVVAADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ +R+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K+Q
Sbjct: 198 IGMPLGEACARLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQ 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY T+P Y+ +L   P G ++L     +M  GI VM+
Sbjct: 258 AMSMEAKASAAIIGSLPPVVMMLVYLTTPDYIAMLWTHPTGRLMLAGCVLWMSAGIFVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
 gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
          Length = 322

 Score =  196 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F +  P ALD + RS+RAG  ++ A+ ++  +   P+  EF+ V +   
Sbjct: 136 LSRQANKRRQAFSEKLPEALDYVTRSLRAGHSLTSAIGIVGKEFPGPIGQEFKIVFDEIS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E++ R+   +   +++FF   + +Q + GGNL+E L  L++ +R+R  ++ KV+
Sbjct: 196 FGIPFKEAMDRLADRVESVDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++GS+PF ++ ++   +P Y +VL + P+GH L+ V A  M +G   + 
Sbjct: 256 TLSAEGRISALVLGSMPFILTAILTVINPEYTSVLWSTPQGHTLIMVMAVLMALGFFSLN 315

Query: 181 LMINFDV 187
            +    V
Sbjct: 316 RISQIKV 322


>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 328

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/186 (48%), Positives = 140/186 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +LIK+R   F ++F NA+D+IVR V++GLPV+D + +I  +S +PVR+EF+ ++E Q 
Sbjct: 142 LSYLIKRRQKAFTEEFANAIDVIVRGVKSGLPVNDCLKLIATESPEPVRTEFQGIVEGQR 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++L + ++++   MPL EV+FF  V+++Q + GGNLSEAL NLS++LR+RK M+ K+Q
Sbjct: 202 VGVTLEQGLAKIYERMPLPEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQ 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLP  V  L+YF+SPGYM+VL +   G+M++     +M IG++VM+
Sbjct: 262 AMSQEAKASAGIIGSLPPGVMLLIYFSSPGYMDVLFSTTAGNMIIVGGIMWMAIGVLVMK 321

Query: 181 LMINFD 186
            MI+F 
Sbjct: 322 KMIDFK 327


>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F D  P ALD I R++RAG  ++ A+ ++  +  +P+  EF+ V +   
Sbjct: 136 LMQLADRRLRAFEDKLPEALDHISRALRAGHSLAPAMGMVGQEFGEPIGYEFKIVFDEIG 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E+I R+   M   +++FF   +++Q + GGNL+E    L+R +R R  ++ K++
Sbjct: 196 FGIPFKEAIGRLAERMQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +AS W++GS+PF +  ++   +P Y+++L    RG+ L+ + A  M +G +V++
Sbjct: 256 TLSSEGRASGWVLGSMPFVLMMVLSLINPEYISLLWTTSRGNNLMLIGAGLMSVGFVVLK 315

Query: 181 LMINFDV 187
            ++   V
Sbjct: 316 RIVQIKV 322


>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
 gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
          Length = 322

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 103/176 (58%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F D  P ALD I RS+RAG  ++ A+ ++  +  DP+  EF+ V +    G+   ++I  
Sbjct: 147 FGDKLPEALDYISRSMRAGHSLTSAIGMLGTEFRDPIGHEFKTVFDEIGFGIPFKDAIGE 206

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   +   +++FF   + +Q + GGNL+E L  LS  +R R  ++ K++ LS E +ASAW
Sbjct: 207 LADRVQSTDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASAW 266

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++GS+PF +  ++   +PGY++VL   P GH L   A   M +G  +++ ++NF V
Sbjct: 267 VLGSMPFALVAILTLINPGYISVLWTTPEGHKLTLSALGLMSVGFFLLKRIVNFKV 322


>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 330

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 110/187 (58%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H   +R A      P+ALD++ R++RAG   + +V +I  + S+P+  EFR V +   
Sbjct: 144 LNHRRSRRLAHLERQLPDALDLVTRALRAGHSFASSVQMIGDEMSEPIAGEFRMVADEVG 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL ++++ M   +PL ++ +F   + +Q   GGNL+E L NLSR++RDR  + A+V+
Sbjct: 204 FGVSLQQALTNMSERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVR 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G +PF +  L+   +P +M+ L  DP G   +      M+IG +++R
Sbjct: 264 VLSAEGRLSAWILGLMPFALVALLNAFNPEFMSPLWTDPIGITAVKYMLGLMVIGAVILR 323

Query: 181 LMINFDV 187
            ++   V
Sbjct: 324 KIVKIRV 330


>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 329

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R        P ALD+I R++RAG   S  + +   + S+P+  EFR V +  +
Sbjct: 143 LQRKRNQRLGLLERQIPEALDLIARALRAGHAFSAGLQMAGEELSEPIAGEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AK++
Sbjct: 203 YGTSLQQALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G +PF ++ L+ F +P +M+ L  DP G ++L   A  M+IG++++R
Sbjct: 263 VLSSEGRMSAWILGLMPFALAALLNFVNPEFMSTLWTDPIGIVILQWLAGLMVIGMLMLR 322

Query: 181 LMINFDV 187
            ++   V
Sbjct: 323 RIVRIRV 329


>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
 gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
          Length = 324

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 100/185 (54%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +   +F    P ALD++ R++RAG     A+ ++  +  DP+  EFR + +  + G
Sbjct: 140 RARNQHMQRFELQLPEALDLMGRALRAGHAFPTAIKMVAEEMKDPIGGEFRILFDEMNYG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +       ++S+F   + +Q   GGNL+E L N+S+I+R R  +  +++ L
Sbjct: 200 VPQQTAMLNLASRTDSTDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SAWI+G LPF  + L+   +PG+M VL  DP G   +  A   M++G++ MR +
Sbjct: 260 SAEGKLSAWILGCLPFATAALINIVNPGFMKVLWEDPAGINFIYGAMGMMVLGVVWMRKI 319

Query: 183 INFDV 187
           I   V
Sbjct: 320 IRIRV 324


>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
 gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
 gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
          Length = 325

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 326

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+RT KF  +F +A+DI+VR +++GLPV D + +I  +   P+  EF+R+ E   
Sbjct: 140 LSFLAKRRTTKFTANFADAIDILVRGIKSGLPVHDGLKIIAKELPAPLGPEFQRLNENIS 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L  S+ +M   MP  E+ FF+ VI++Q + GGNL+EAL NLS +LR R+ M+ K++
Sbjct: 200 IGMGLDMSLEKMCERMPTPELRFFTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG LP  V  ++Y T+PGYM  L+ DPRG+ +L   A +ML GI +MR
Sbjct: 260 ALSSEAIASASIIGVLPPGVGIMIYITNPGYMGPLLTDPRGNFMLLGGAVWMLCGIFMMR 319

Query: 181 LMINFD 186
            MINF 
Sbjct: 320 KMINFK 325


>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
          Length = 325

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+A D+I R++RAG   S A++++ G+ +DP+  EFR   +  + G
Sbjct: 141 RCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFADPMGGEFRITFDEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  K++ L
Sbjct: 201 VPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKIRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E K SA I+  LPF  + L+   +P +++VL  D  G +L+G     M  GI+ MR +
Sbjct: 261 SAEGKLSALILTLLPFGTAALLAIMNPDFISVLWEDSAGVLLVGATVTSMAFGILWMRHI 320

Query: 183 INFDV 187
           I   V
Sbjct: 321 IRIRV 325


>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 325

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 105/177 (59%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +     P+A D+I R++RAG      + ++  +  DP+  EF  V +  + G+S+++++ 
Sbjct: 149 QLERQLPDAADLIARALRAGHSFPATLGMVGQELPDPLGGEFALVFDEINYGVSMNDALL 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            MV  +P++++ +F   + +Q + GGNL+E L ++S I+R+R  +  KV+ LS E + SA
Sbjct: 209 NMVSRVPVEDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           W++  LPF +  L+   +PGY++V   DP G  L GVA   ML GI+ MR ++   +
Sbjct: 269 WVLAVLPFAILGLLTVLNPGYISVFWKDPAGVQLAGVAITMMLFGILWMRKIVRIHI 325


>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
          Length = 336

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/185 (59%), Positives = 142/185 (76%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H  K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +G
Sbjct: 152 HRRKQRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS+ E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV AL
Sbjct: 212 LSIPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LPF V  LVY TSP YM +L     GHMLLGVAA  ML GI +M+ M
Sbjct: 272 SMEAKASAAIIGALPFIVMVLVYLTSPLYMTLLFTSSTGHMLLGVAAVLMLTGIFIMKNM 331

Query: 183 INFDV 187
           INFD+
Sbjct: 332 INFDM 336


>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 325

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  +  +P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFPEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 325

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G
Sbjct: 141 RCRGKRMRKLERQLPDICDMISRALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +++  +   +P+Q++ +F   + +Q + GGNL+E L  +S ++R+R  +  KV+ L
Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGGMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
 gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
          Length = 324

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R   FL   P+A+D+IVR ++AGLP+ +++ V+   S +P++SEF  +IETQ 
Sbjct: 138 LGFLKKRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVAADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++
Sbjct: 198 IGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VM+
Sbjct: 258 AVSMEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMTAGILVMK 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 324

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/186 (49%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R   FL   P+A+D+IVR ++AGLP+ +++ V+V  S +P++SEF  +IETQ 
Sbjct: 138 LGFLKQRRETAFLRALPDAVDVIVRGIKAGLPLFESLKVVVADSPEPLKSEFAAIIETQA 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E+ SR+   MP+ E +FF  VI++Q + GGNLSEAL NLS++LRDRK M  K++
Sbjct: 198 VGMPLGEACSRLYERMPVPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLP  V  LVY ++P Y+ +L   P G ++L  +A +M  GI+VMR
Sbjct: 258 AVSTEAKASAAIIGSLPPIVMLLVYLSTPDYIALLWTHPTGRLMLAGSALWMSAGILVMR 317

Query: 181 LMINFD 186
            MINFD
Sbjct: 318 KMINFD 323


>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
 gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
          Length = 325

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 101/185 (54%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+  D+I R++R+G   +  + ++  +  DP+  EFR   +  + G
Sbjct: 141 RCRGRRMRKLQRQLPDVCDMIARALRSGHSFTSTLGMVGDEFPDPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L++++  +   +P Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VPLNDALKNLATRVPAQDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF    ++   +  +++VL  DP G  ++G     M  G++ +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTGAVMALVNREFLSVLWQDPAGIRMVGTMLVSMAFGLLWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 323

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR  K     P  +D++ R+++AG   S A+ +      +P   EFR   +  + G+S
Sbjct: 141 KRKRLEKIERQLPEVIDLMARALKAGHAFSGALQMASTDGPEPAADEFRLTFDEINFGVS 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +++  +   +P+ ++ +F   + +Q + GGNL+E L  +S ++R R  +  K++ LS 
Sbjct: 201 VQDALMNLATRVPITDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSA 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAWI+  LPF  + ++   +PG++ VL  DP G M++G A   M+IGI VM  +I 
Sbjct: 261 EGRLSAWILSCLPFATALMINLVNPGFLTVLWTDPIGVMMVGTALGMMVIGIFVMSRIIK 320

Query: 185 FDV 187
             V
Sbjct: 321 IRV 323


>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
 gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
 gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
 gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
          Length = 325

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K RT KF + F +A+DIIVR +++GLPV D + +I  +  +P+  EFR + E   
Sbjct: 139 LGFLAKGRTQKFTEAFADAVDIIVRGIKSGLPVHDCLKIIGKECPEPLAGEFRILTENVA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ +  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPMDAALEKMYERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA+IIG LP  V TL+  TSP YM  +  DPRGH++L  +A +M IGI VMR
Sbjct: 259 ALSAEAVASAFIIGCLPPGVVTLISVTSPAYMAPMFTDPRGHLMLLASAIWMSIGIFVMR 318

Query: 181 LMINFD 186
            MINF 
Sbjct: 319 NMINFK 324


>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
          Length = 337

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 108/183 (59%), Positives = 141/183 (77%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R  KFL++FPNALD+IVR+ RAGLP++D + +I  ++ +PV+SEF++V+E Q +GLS
Sbjct: 155 RKRRLKKFLEEFPNALDVIVRATRAGLPLNDGLRLIASEAVEPVKSEFKKVVEAQQIGLS 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++ +M   MP  E +FF+ VI +Q+Q GGNLSEAL NLS++LRDRK MKAKV ALSM
Sbjct: 215 IPEAVGKMPDSMPCPETNFFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSM 274

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA IIG+LPF V  LVY TSP YM +L     GHMLLG+AA  ML GI +M+ MIN
Sbjct: 275 EAKASAAIIGALPFIVMVLVYLTSPQYMTLLFTSSTGHMLLGIAAVLMLTGIFIMKNMIN 334

Query: 185 FDV 187
           FD+
Sbjct: 335 FDM 337


>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
           21756]
          Length = 325

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L + R  KF + F +A+DIIVR +++GLP+ D + +I  +S +P+  EFR + E   
Sbjct: 139 LSILAQGRIRKFTEAFSDAIDIIVRGIKSGLPLHDCLRIIGQESPEPLAGEFRMLTENVA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L  ++ +M   MP  E+ FF+ V+++Q + GGNL+EAL NLS +LR RK MK K++
Sbjct: 199 MGVPLDAALDKMHERMPTNELRFFAIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG+LP  V  L+  TSP YM  L  DPRGH++L  AA +M IG++VMR
Sbjct: 259 ALSAEAVASALIIGALPPGVIVLISVTSPAYMQPLFTDPRGHLMLLAAAIWMGIGVLVMR 318

Query: 181 LMINFD 186
            MINF 
Sbjct: 319 KMINFK 324


>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 329

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     R  +     P ALD+I R++RAG   S ++ +   + ++P+  EFR V +  +
Sbjct: 143 LQRKRLLRLKRMERQLPEALDLIARALRAGHAFSASLQMAGEELTEPIADEFRLVHDEIN 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++++ +   +P+ ++ +F   + +Q + GGNL+E L+NLSR++R+R  + AKV+
Sbjct: 203 YGTSLQQALTNLGERVPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKVR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS + + SAW +G +PF ++ L+   +P +M+ L  DP G  +L   AA M+IG++++R
Sbjct: 263 VLSADGRMSAWFLGLMPFGLAALLNLMNPEFMHPLWTDPIGITILKWLAALMVIGLLLLR 322

Query: 181 LMINFDV 187
            +    V
Sbjct: 323 RIARIRV 329


>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 325

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 105/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 320

 Score =  193 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K     R  KF +  P+A+D++ R++RAG  +S A+ V+  +S++P+  EF  V + Q 
Sbjct: 134 LKWKKSSRLGKFEEALPDAIDLMARALRAGHAMSSAIEVVAEESAEPLAGEFAIVFQQQK 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL   +++ ++   +P +++SF  T I VQ + GG+L++ L   +R++R+R  ++ +++
Sbjct: 194 FGLQFRDALLQLGDRVPSKDLSFLITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIR 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + + WI+ +LP  +  L+   +PGY ++L +DP G +LLG     +LIG  ++ 
Sbjct: 254 TYTAQGRLTGWILSALPVVMLCLINVATPGYSHILFHDPTGQLLLGAGGVLILIGGFIIS 313

Query: 181 LMINFDV 187
            +++  V
Sbjct: 314 RVVDIKV 320


>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 326

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 114/185 (61%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR A F    P AL+++ R++RAG   +  + ++V + +DP+R EF+  +E  + G
Sbjct: 142 MRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFADPIRVEFQTTLEEINFG 201

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N+S ++R+R  +K ++Q L
Sbjct: 202 MGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERFKLKGRIQVL 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AW++  LPF V+ ++ F +PGY+ +L  DP G ++    A  + +GI+V+R M
Sbjct: 262 SAEGRMAAWVLCLLPFGVAAVIQFVNPGYLGLLFTDPMGRIMSYGVAGLITMGILVIRKM 321

Query: 183 INFDV 187
           +  +V
Sbjct: 322 VRIEV 326


>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 332

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 127/183 (69%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R AKF     NA+D++VR V++GLP+++ + VI  +S +P+  EFR V+E Q LG+
Sbjct: 149 LTKRRQAKFTSHLANAIDVVVRGVKSGLPLNECLQVIARESPEPLAGEFRSVMEQQRLGV 208

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L++++ RM   MPL EV F + VI++Q Q GGNLSEAL+NLS +LRDR+ +  KV+ALS
Sbjct: 209 PLADALDRMYDRMPLAEVRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKALS 268

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EAKASA ++ SLP  V  +VY +SPGYM  L     G  ++ + A +M IG++VM+ MI
Sbjct: 269 AEAKASAMVLASLPPGVMFMVYMSSPGYMMPLFTTTPGRFMMALGATWMTIGVLVMKKMI 328

Query: 184 NFD 186
           NF 
Sbjct: 329 NFK 331


>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 338

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/183 (48%), Positives = 135/183 (73%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             K+R  +F ++F NA+D+IVR +++GLPV D + +I  ++ +PV+SEF  +++ Q LG+
Sbjct: 155 RRKRRFKQFTNEFSNAVDVIVRGLKSGLPVGDCLRIIAAEAQEPVKSEFVAIVQDQTLGI 214

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL E++ R+   +PL E +FF+ V+ +QS+ GG+L+EAL NLS++LR+RK M AK++A+S
Sbjct: 215 SLDEAVQRLWERVPLAEANFFAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMS 274

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EAK+SA IIG+LPF VS  +Y TSP YM++L +   G ++L   A +M +GI+VMR MI
Sbjct: 275 SEAKSSAGIIGALPFFVSAAIYLTSPDYMSLLFSTLTGKLVLAGCALWMGMGILVMRKMI 334

Query: 184 NFD 186
           NFD
Sbjct: 335 NFD 337


>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
          Length = 325

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRAKRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++++ +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALTNLATRVPVQDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  ++ VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLLVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 331

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 128/187 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R  KF ++F +ALDIIVR V++GLP+++ + +I  +   PV+ EF+ ++E   
Sbjct: 145 LGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQEGEAPVKQEFQLLVEGLA 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E + RM R MPL E+SFF+TV+++Q + GGNL+EAL NLS +LR RK M+ KV 
Sbjct: 205 VGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLAEALNNLSAVLRARKMMREKVS 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASAWIIGSLP  V  +V   SP YM  L+  P GH LL     +ML GI+VMR
Sbjct: 265 ALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMTPLLTTPMGHFLLLGGGVWMLTGILVMR 324

Query: 181 LMINFDV 187
            MINF +
Sbjct: 325 SMINFKM 331


>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 324

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +++RT  F D   +AL +I  S+R G     ++ ++  +   P+ +EF RV+   +
Sbjct: 138 LRVKVERRTKAFNDQLGDALILIANSLRTGYSFLQSIEMVSREMLPPIATEFARVLREMN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++  E+++ + + +   ++    T + +Q Q+GGNL+E L N++  +R R  +K +++
Sbjct: 198 LGVTTEEALNNLAKRVDSDDLDLVVTAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  ++Y  +PGYM +L   P G  L+  A    LIG++++R
Sbjct: 258 TLTAQGRISGVIIGLLPVALGLVIYALNPGYMQILFTHPLGRALVAGAIVSQLIGVLLIR 317

Query: 181 LMINFDV 187
            ++N DV
Sbjct: 318 RIVNIDV 324


>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 324

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 106/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR AKF +  P+A+D++ R++RAG  +  ++ +I  + SDP+  EFR   +  + G
Sbjct: 140 RFRHKRLAKFEEQLPDAIDLMCRALRAGHALPQSLKMIGDEMSDPISGEFRTTFDEVNYG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SL E++  +   +P  ++ +    + +Q + GGNL+E L N+S ++R R  +   ++ L
Sbjct: 200 FSLQEAMMNLATRIPSTDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E K SAWI+  LPF V+ +++  +PG+M VL  D  G M++ +    ML GI  MR +
Sbjct: 260 AAEGKLSAWILTILPFAVALVIHLLNPGFMKVLWEDQTGLMMVSIIGLMMLAGIFWMRQI 319

Query: 183 INFDV 187
           I   V
Sbjct: 320 IKIQV 324


>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 335

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/186 (52%), Positives = 142/186 (76%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  KF ++FPNA+D+IVR V++GLP++D + ++ G++ DPVRSEFR++IE+Q 
Sbjct: 149 LSRARKKRFHKFGEEFPNAIDLIVRGVKSGLPLNDTLRIVSGETLDPVRSEFRKIIESQQ 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ +SE++ ++ R +P  E +FF+ VI++QSQ GGNLSEAL NLS +LRDRK M+AKVQ
Sbjct: 209 MGVPISEAVEKLYRNIPTPEANFFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQ 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKAS  IIG+LP  V+ LVY T+P Y++VL     GH++L V+  +M  G+ VM+
Sbjct: 269 AMSMEAKASGGIIGALPVVVAGLVYITTPDYISVLFTTGTGHLILAVSGLWMATGVFVMK 328

Query: 181 LMINFD 186
            MI+FD
Sbjct: 329 KMISFD 334


>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 325

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  K     P+  D+I R++R+G   +  + ++  + S+P+  EFR   +  + G
Sbjct: 141 RCRARRMRKLERQLPDICDMIARALRSGHSFTSTLGMVGDEFSEPMGGEFRVTFDEVNYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +++  +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ L
Sbjct: 201 VSLHDALMNLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     ML G+  +R +
Sbjct: 261 SAEGRLSAWILGLLPFGTAAVMALLNREFLSVLWEDPAGIRMVGTMLVSMLFGLFWIRRI 320

Query: 183 INFDV 187
           +   V
Sbjct: 321 VRIRV 325


>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
 gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
          Length = 331

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/183 (49%), Positives = 121/183 (66%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I  R  KF   F + +D+IVR V++GLP+ + + +I  +S  P+ +EF+RVI+   +G +
Sbjct: 149 ISARQKKFTQQFSDGIDVIVRGVKSGLPLIECLRIIASESPAPLGTEFKRVIDAIQMGTT 208

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +S+S M   MPL EV+FF  VI +Q Q GGNLSEAL NLS +LR RK +  KV+ALS 
Sbjct: 209 VEKSLSNMYNRMPLPEVNFFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSS 268

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA IIG+LP  V  LVYF+SP Y+ +L   P GH +L V A  M  GI VM+ M+ 
Sbjct: 269 EAKASAMIIGALPIAVMILVYFSSPDYITLLFTHPTGHFMLMVGAGLMGAGIFVMKQMMK 328

Query: 185 FDV 187
            DV
Sbjct: 329 LDV 331


>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 322

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R + F    P ALDI+ R ++AG PV+ A + +  +   P+  EF+      +
Sbjct: 136 LSKKISDRLSAFEGQLPEALDIMRRMLQAGQPVTQAFSEVGEEMPAPIGVEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +PGY+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSFVNPGYVEPLYTDPRGMKLISGGVVSLFIGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 322

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+ +    +
Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGLEMPAPIGVEFKNMFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFLFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFIGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 326

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 112/185 (60%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +F    P ALD++ R++RAG   +  + ++V + ++P+ SEFR  +E  + G
Sbjct: 142 MRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMVVSEFAEPISSEFRTTLEEINFG 201

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++ L
Sbjct: 202 MGVTVALDNLMDRVDCPDLNFFVISVKIQNETGGNLAEIIGNIASLIRERLKLKGRIRVL 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AW++  LPF V   V   +PGY+ +L  +P G +L+ V    M +G++V+R M
Sbjct: 262 SAEGRMAAWVLCLLPFFVCGAVQVLNPGYLGLLFTEPLGRILIYVVMGLMTLGVLVIRKM 321

Query: 183 INFDV 187
           +  +V
Sbjct: 322 VRIEV 326


>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 322

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 105/183 (57%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR        P+ALD++ R++ AG     A+ ++  +  +P+ SEFR V +  + G+ 
Sbjct: 140 KQKRINTIEQQLPSALDLMGRAMVAGHAFPSALQMVGTEMPEPIASEFRIVFDEINYGIP 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            SE++  +++ +P  +VS+F   + +Q + GGNL+E L N+S ++R R  +   V+ LS 
Sbjct: 200 TSEALMNLIQRVPSTDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAWI+  LPF +  ++   +P ++++L  DP G  ++ +A   M+ GI VM  +I 
Sbjct: 260 EGRLSAWILTLLPFALGAVLQLVNPKFLSILWTDPNGLKMVIIALILMVFGIFVMWRIIK 319

Query: 185 FDV 187
             V
Sbjct: 320 IRV 322


>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 324

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 115/187 (61%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  +F    P ALD++ R+++AG      + ++  + +DP+  EF + ++  +
Sbjct: 138 LRRLKARRMGRFQAQLPEALDLMSRALKAGHTFGGGMRMVANEFADPIGGEFGKTLDEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ +   + ++++ FF   +++Q + GGNL+E +AN++R++R+R  +  KV+
Sbjct: 198 YGMDVDRALANLQLRVDVEDLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SA ++ +LPF ++ ++YF +P Y+++L  +  G  +   A A M++GI+VMR
Sbjct: 258 VLSAEGRISALLLSALPFFIAGVLYFINPDYISLLWTNELGRSMAWGAVASMIVGIVVMR 317

Query: 181 LMINFDV 187
            M+   V
Sbjct: 318 RMVKIQV 324


>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 326

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  +     P+A D+I R++RAG     A+ ++  +   P+  EFR   +  +
Sbjct: 140 LRSRRAKRVVQLERLLPDAADLIARALRAGHSFPAALGMVADELPQPLGGEFRIAFDEIN 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+++++  +V  +P+ +V +F   + +Q + GGNL+E L N++ I+R+R  + AKV+
Sbjct: 200 CGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVR 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+G LPF V   +   +PGY  V   D  G  + GVA + M +G++ +R
Sbjct: 260 VLSAEGRLSAWILGLLPFIVIAALSVLNPGYCKVFWEDETGQKIAGVALSMMALGVLWLR 319

Query: 181 LMINFDV 187
             +   V
Sbjct: 320 KTVRIRV 326


>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 325

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 102/181 (56%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+  D+I R++R+G   + A+ ++  + SDP+  EFR   +  + G+SL 
Sbjct: 145 RRMRKLERQLPDVCDMIARALRSGHAFTSAIGMVSDEFSDPMGGEFRITFDEINYGVSLH 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +P++++ +F   + +Q + GGNL+E L +++ ++R+R  +  K++ LS E 
Sbjct: 205 DALMNLANRVPVRDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAW++G LPF  +  +   +P ++ VL  D  G  ++      M  G++ MR +I   
Sbjct: 265 RMSAWVLGLLPFATAGAMMVLNPEFLAVLWQDSAGIKMVATTLVSMAFGVLWMRRIIRIH 324

Query: 187 V 187
           V
Sbjct: 325 V 325


>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
 gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
          Length = 325

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 104/177 (58%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A+F D  P ALD++ R++R+G  ++  + ++  +   P+ SEF   ++  +LGL+  E+ 
Sbjct: 148 ARFQDQLPEALDLLARALRSGHAMTSGLEMVAAEMDPPISSEFGAAVDEINLGLTFQEAF 207

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   +P  ++ FF+  + +Q + GGN++E L ++SR++R+R   K +V+AL+ E + S
Sbjct: 208 ENLCERVPSTDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLS 267

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           A ++  LP  +   ++F +  Y+++L  +P G  +L  A    ++G  +++ ++  +
Sbjct: 268 AMVLIGLPIALFGYIFFVNHQYLSLLWTEPLGQYMLAGAIVLQILGAFIIKKIVTIE 324


>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 334

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/187 (58%), Positives = 151/187 (80%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L+K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q 
Sbjct: 148 LAFLLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + + I RM+  MPL EVSFFS VI++Q+Q GGNLSEAL+NLSR+LRDR+ M+AKV 
Sbjct: 208 VGIGIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVN 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V  LV+FTSP Y+++L  D RGH++LG +A +MLIGI +MR
Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 QMINFDI 334


>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 325

 Score =  190 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 108/177 (61%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +     P+  D++ R++R+G   + A+ ++  + ++P+  EFR V +  + G+S+SE+++
Sbjct: 149 QLERQLPDVCDMLSRALRSGHAFTGAIDMVGAEFTEPMSGEFRIVFDEINYGVSISEALT 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P++++ +F   + +Q + GGNL+E L  ++ ++RDR  +  KV+ LS E + SA
Sbjct: 209 NLATRVPIRDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           W++G LPF V   +   +PG++NVL  DP G  ++  A+  ML GI+ MR ++   V
Sbjct: 269 WVLGLLPFGVGGAMMAINPGFLNVLWRDPAGVRMIAAASVAMLFGILWMRHIVKIRV 325


>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 327

 Score =  190 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 1   MKHLI--KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           ++ L    KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V + 
Sbjct: 139 LRMLRARSKRLRLLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDE 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            + G++L+E++  +   +P++++ FF   + +Q + GGNL+E L  ++ ++R+R  +  +
Sbjct: 199 INYGVTLNEALLNLATRVPVRDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQ 258

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           V+ LS E + SAWIIG LPF  +  +   +P +++VL  DP G  ++      M+ G++ 
Sbjct: 259 VRVLSAEGRLSAWIIGLLPFAAAGGMNLLNPSFLSVLWEDPAGLKVIEAVLVSMVFGVLW 318

Query: 179 MRLMINFDV 187
           MR ++   V
Sbjct: 319 MRRIVRIRV 327


>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
          Length = 323

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
          Length = 323

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Sinorhizobium fredii NGR234]
 gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 332

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 131/182 (71%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  +F  +FPNA+D+IVR ++AGLP++D + VI  ++ +PV+ EF  +   Q LGL 
Sbjct: 150 RNRRLKRFTAEFPNAVDVIVRGLKAGLPMTDCLRVIAAEAQEPVKGEFLTIAHDQTLGLP 209

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++ R+   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S 
Sbjct: 210 VDEAVERLCERMPLPEARFFAIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSA 269

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK+SA IIG+LPF V+  VY TSP YM++L     G M+L  +A +M IG ++MR MIN
Sbjct: 270 EAKSSAGIIGALPFFVAGAVYLTSPDYMSLLFTTMTGKMVLVGSALWMGIGTLLMRKMIN 329

Query: 185 FD 186
           FD
Sbjct: 330 FD 331


>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
 gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
          Length = 325

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 104/177 (58%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+A D+I R++RAG   S A++++ G+ ++P+  EFR   +  + G+ L E++ 
Sbjct: 149 KLERQLPDACDMIARALRAGHAFSSAISMVGGEFAEPMGGEFRITFDEINYGVPLQEALL 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  KV+ LS E K SA
Sbjct: 209 NLATRVPVSDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  LPF  + L+   +P ++ VL  DP G +L+GV    M  GI+ MR +I   V
Sbjct: 269 WILTLLPFGTAALLAIMNPDFIAVLWQDPAGVLLVGVTITSMAFGIVWMRYIIRIRV 325


>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
          Length = 319

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R   F    P+A++++ R++RAG  ++  + V+  +   P+  EF RV E Q+
Sbjct: 133 LHMKRSSRLKAFAAQLPDAMELVARALRAGHSLAAGMHVVAEEMPAPICKEFGRVYEEQN 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M   +P  ++ FF T +++Q Q GG+L+E L  +  I+R+R  +  +V+
Sbjct: 193 LGIPLEEALKGMCDRVPNLDLKFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ +LP  +  ++ +T P Y+ +L  D  G  +   A   MLIG   ++
Sbjct: 253 ALTAEGRLSGVVLIALPIGLFVMMLWTKPDYVEMLWKDDLGIKMSIGAIVLMLIGSYAIK 312

Query: 181 LMINFDV 187
            +++  V
Sbjct: 313 KIVDIKV 319


>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 401

 Score =  189 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 99/185 (53%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   + 
Sbjct: 217 RRYRQRLQAFDAQLPDALTLMANALKSGYSFLQAADVVAREMPAPIAEEFGWLVKETRVN 276

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++ L
Sbjct: 277 IPLEDALANLLDRVPSPDLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTL 336

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + S WI+GSLP  +  L+   +P Y+  L+  P G MLLG      + G++V+R +
Sbjct: 337 TAQGRLSGWIVGSLPVALLVLLSAMNPAYLQPLLATPVGWMLLGAGVVMEVAGVLVIRAL 396

Query: 183 INFDV 187
           I  D+
Sbjct: 397 IRVDI 401


>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
 gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens AM1]
          Length = 323

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQKRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 333

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q 
Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++
Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR
Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326

Query: 181 LMINFD 186
            MINFD
Sbjct: 327 KMINFD 332


>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 325

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 128/184 (69%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            + K RT KF + F +A+DIIVR +++GLPV+D + +I  +  +P+  EFR ++E   +G
Sbjct: 141 MMAKARTKKFTEAFSDAIDIIVRGIKSGLPVNDCLKIIGKECPEPLAGEFRVLVENTGMG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+ +++ RM   MP  E+ FF+ V+++Q++ GGNL+EAL NLS +LR RK M  K++AL
Sbjct: 201 MSMDQALERMYERMPTNELRFFTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKAL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EA ASA+IIG+LP  V  L+  T+P YM  +  D RGH++L VAA +M +GI VMR M
Sbjct: 261 SAEAVASAFIIGALPPGVVILISVTAPTYMAPMFTDQRGHLMLMVAAFWMTVGIFVMRKM 320

Query: 183 INFD 186
           INF 
Sbjct: 321 INFK 324


>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
 gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
          Length = 320

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 107/185 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K R AKF    P+AL++I R++RAG  +     ++  +S DP+  EF +V E Q+LG
Sbjct: 136 FKRKARLAKFGKQLPDALELISRALRAGHSLGAGFRLVSEESDDPIGREFAKVFEAQNLG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++I+ M   +P  ++ FF T I +Q Q GG+L+E L  + R++R R  +   +QAL
Sbjct: 196 VSLEDAITDMTERVPNLDLKFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++  LP  +   ++  +PGY+  L  DP G+ +L VA    LIG  V++ +
Sbjct: 256 TGEGRISGIVLLGLPPALFVALWRLNPGYVMTLFTDPLGNKMLAVAIVMQLIGAWVIQKI 315

Query: 183 INFDV 187
           I+  V
Sbjct: 316 IDIKV 320


>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
 gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
           extorquens DM4]
          Length = 323

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R   F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E+Q 
Sbjct: 137 LKRRQRRRVEAFIEELPNAMDVVVRGLRSGIPLGDCLRMIAREAKEPLRSEFRVTMESQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 197 LGLSMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V    Y +SP Y  +L     G + L ++  +ML G+ VM+
Sbjct: 257 AMSMEAKASAAIIGALPFVVGGGTYLSSPDYTALLWTTSFGKIALVISGLWMLTGVFVMK 316

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 317 KMINFDI 323


>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 333

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 130/186 (69%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +F  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q 
Sbjct: 147 VNMKRNARFTRFAAEFPNAVDVIVRGLKAGLPMPDCLRVIAMEAQEPVKGEFLAIVQDQT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ RM   MPL E +FF+ V+++QS+ GG+LSEAL NLS++LR+RK MK K++
Sbjct: 207 LGIPVDEAVKRMSERMPLAEANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIK 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIG+LPF V+  VYF SP YM +L     G +++     +M IGI+VMR
Sbjct: 267 AMSSEAKSSAGIIGALPFLVAGAVYFMSPDYMALLFTTMIGKVVVVGCGLWMGIGILVMR 326

Query: 181 LMINFD 186
            MINFD
Sbjct: 327 KMINFD 332


>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 327

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 126/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R  +F  +F NALD+I R V++GLP+++ + ++  +S +PV++EF +++E   
Sbjct: 141 LGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILSVESPEPVKTEFAKLVEGIA 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL + + RM   MPL E++FF TV+ +Q + GGNL+E L NLS +LR RK M+ K+ 
Sbjct: 201 VGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRSRKMMREKIG 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIGSLP  V  +VY T+P YM  +   P G ++L     +M IGIMVMR
Sbjct: 261 ALSSEAKSSAAIIGSLPPGVMGIVYATTPSYMGQMFTHPTGQLMLLGGLTWMFIGIMVMR 320

Query: 181 LMINFDV 187
            MINF +
Sbjct: 321 GMINFKI 327


>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 321

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      +
Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++
Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +  ++    PGY++ L  DPRG  ++      + +G + MR
Sbjct: 255 TISAESRMSAWILVLSPFVLFIVMSLIHPGYVSPLYEDPRGVGVISYGIVSLFLGSLWMR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 HIINFEV 321


>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 322

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +   P+  EF+      +
Sbjct: 136 LGKKISDRLAAFEEQLPEALDIMRRMLQAGQPVTQAFNEVGVEMPAPIGIEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 YGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +PGY+  L  DPRG  L+      +  G + +R
Sbjct: 256 TLSAESRLSAWILVLSPFVLFIFLSVINPGYVEPLYTDPRGMKLVSGGVVSLFFGSLWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 KIINFEV 322


>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 334

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 152/187 (81%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++K+R  KFL++FPNALD++ RS+++GLP++DAV +I     +PV++EF+RV++ Q 
Sbjct: 148 LGFILKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQ 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + + I RM+  +PL EVSFFSTVI++Q+Q GGNLSEAL+NLS++LR+R+ M+AKV 
Sbjct: 208 VGIGIPQGIERMMLTVPLFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVN 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V  LV+FTSP Y++VL  D RGH++LGV+  +MLIGI +MR
Sbjct: 268 ALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSVLFTDMRGHIILGVSGLWMLIGIFIMR 327

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 328 QMINFDI 334


>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
 gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
          Length = 339

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 132/182 (72%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R   FL++ PN +DIIVR V+AGLP+SD V V+  ++ +PV +EFR+V ETQ +G+S
Sbjct: 157 RKRRFNAFLNELPNGIDIIVRGVKAGLPLSDCVKVVAREAREPVATEFRKVTETQVMGVS 216

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++S+M   +PL E +F + V+S+Q + GG L+EAL NLSR+LR RK MKAK++ALS 
Sbjct: 217 LAEALSKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSS 276

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK+SA IIG+LPF V  +++F +P YM +L     G +++     +M  GIMVMR MIN
Sbjct: 277 EAKSSAAIIGALPFVVGGILFFIAPDYMMILFTATTGKIIVAGCLFWMFCGIMVMRSMIN 336

Query: 185 FD 186
           FD
Sbjct: 337 FD 338


>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
 gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
          Length = 340

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 131/182 (71%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R   FL++ PN +DIIVR V+AGLP+SD + V+  ++ DPV +EFR++ ETQ +G+S
Sbjct: 158 RKRRFNAFLEELPNGVDIIVRGVKAGLPLSDCIKVVAREARDPVATEFRKITETQIMGIS 217

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++ ++   +PL E +FF+ V+++Q + GG L+EAL NLS++LR RK MK K++ALS 
Sbjct: 218 LADAVGKLPERVPLPEANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSA 277

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK+SA IIGSLPF V  ++Y  SP Y+ VL     G++++     +M  GIMVMR MIN
Sbjct: 278 EAKSSAGIIGSLPFFVGGIMYLISPKYIMVLFETTAGNIIIAGGLFWMFCGIMVMRAMIN 337

Query: 185 FD 186
           FD
Sbjct: 338 FD 339


>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 321

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPIVQSFNEVGEEMPEPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAIMQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L +DPRG  ++ +    + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYSDPRGISMVSIGVILLAIGALWIR 314

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 315 KIINIEI 321


>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 327

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 106/189 (56%), Gaps = 2/189 (1%)

Query: 1   MKHLI--KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           ++ L   +KR        P A D+I R++RAG   S A+ ++  + ++P+  EFR V + 
Sbjct: 139 LRMLRARRKRLRVLERQLPEAADMISRALRAGHSFSSALGMLGSEFAEPMAGEFRIVFDE 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            + G++L+E++  +   +P+ ++ +F   + +Q + GGNL+E L +++ ++R R  +  K
Sbjct: 199 INYGVTLNEALLNLATRVPVGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDK 258

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           V+ LS E + S WI+  LPF  +  +   +P + +VL  DP G  ++      M++GI+ 
Sbjct: 259 VRVLSAEGRLSGWILALLPFASAGAMQVVNPTFFSVLWEDPAGLQIIETMLVSMVLGILW 318

Query: 179 MRLMINFDV 187
           MR ++   V
Sbjct: 319 MRRIVQIRV 327


>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 325

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 101/177 (57%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  + G+SL +++ 
Sbjct: 149 KLQRQLPDVCDMIARALRSGHAFTGALGMVGEEFPEPMGGEFRITFDEINYGVSLHDALM 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +P+Q++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS E + SA
Sbjct: 209 NLATRVPVQDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+G LPF  + L+   +  +++VL  DP G  + G     M+ G+  MR +I   V
Sbjct: 269 WILGLLPFGTAALMALLNRDFLSVLWEDPAGVRMTGTMLVSMVFGLFWMRRIIRIRV 325


>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 327

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR        P A D+I R++RAG   S A+ ++  + ++P   EFR V +  + G
Sbjct: 143 RARSKRLRVLERQLPEAADMISRALRAGHSFSSAIGMLGNEFAEPTGGEFRIVFDEINYG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L+E++  +   +P+ ++ +F   + +Q + GGNL+E L  ++ ++R+R  +  +V+ L
Sbjct: 203 VTLNEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVL 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LPF  +  +   +P +++VL  DP G  L+      M  G++ MR +
Sbjct: 263 SAEGRLSAWIIGLLPFAAAGAMNLLNPSFLSVLWEDPAGLKLIEAVLVSMAFGVLWMRRI 322

Query: 183 INFDV 187
           +   V
Sbjct: 323 VRIRV 327


>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CMR15]
          Length = 325

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 95/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + + ++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ L
Sbjct: 201 VPMGDALTGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R +
Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
 gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
          Length = 347

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G
Sbjct: 163 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 222

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL
Sbjct: 223 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 282

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +
Sbjct: 283 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 342

Query: 183 INFDV 187
           I   V
Sbjct: 343 ITIKV 347


>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
          Length = 340

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F+++ PN +DIIVR V+AGLP+ D V V+  ++ DPV +EF +++ETQ 
Sbjct: 154 INRRRKKRFTAFMEELPNGVDIIVRGVKAGLPLGDCVRVVSTEAKDPVSTEFAKILETQK 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SL+E+  ++   +PL E +FF+ V+++Q   GG LSEAL NLSR+LR RK +K K+ 
Sbjct: 214 MGVSLAEAFMKLPERVPLPEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIV 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIG++P  +S  ++F +P Y+N+L+    GH+++     +MLIGI+VMR
Sbjct: 274 ALSSEAKSSAGIIGAMPVLISLALFFIAPDYINILLTTTAGHIVIAGCITWMLIGILVMR 333

Query: 181 LMINFD 186
            MINFD
Sbjct: 334 QMINFD 339


>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
 gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
          Length = 339

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 135/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  +FL++FPNA+DIIVR +++G+P+ D + +   ++ DPV +EF  V++   
Sbjct: 153 VSRARKKRFNRFLEEFPNAVDIIVRGIKSGMPLGDCMHIAASEAKDPVGTEFSLVLDKMQ 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L+E+I  + + +PLQE +F + V+++Q+Q GG+LSEAL NLS+ LR RK MK K++
Sbjct: 213 MGMPLAEAIQSLPKRVPLQETNFLAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIR 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAK+SA IIGSLPF V+ L++  SP Y+ +L++   G +L+G+   +M IGI+VMR
Sbjct: 273 AVSQEAKSSAAIIGSLPFIVTALLFVLSPDYIKLLVDTDIGLVLIGIGLFWMSIGILVMR 332

Query: 181 LMINFDV 187
            MI+F +
Sbjct: 333 KMIDFKI 339


>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 327

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 88/172 (51%), Positives = 126/172 (73%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           +FPNA+D+IVR V+AGLP+ D + ++  ++ +PV+SEFR ++E Q LG+ L +++ R+  
Sbjct: 155 EFPNAIDVIVRGVKAGLPLVDCLNIVAAEAQEPVKSEFRALVEDQTLGMPLQDAVERLPE 214

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            MPL E  FF+ VI++QS+ GG+LSEAL NLSR+LR+RK M+ K++A+S EAKASA II 
Sbjct: 215 RMPLSEARFFAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIA 274

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +LP  V +LVY TSP YM +L   P G  +L     +ML+G ++MR MINFD
Sbjct: 275 ALPIVVGSLVYLTSPAYMALLFTTPIGKAVLAGCVVWMLLGTLMMRKMINFD 326


>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
 gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
          Length = 323

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 136/187 (72%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R A F+++ PNA+D++VR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 137 LKWRQKRRVAAFVEELPNAMDVVVRGLRSGIPLGDCLRMISREAKEPLRSEFRVAMEAQA 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL +S++I RM   +P+ EV+FFS VI +Q + GGNLSEAL+NLSR+LR+RK M  K+Q
Sbjct: 197 MGLPMSDAILRMYERVPVTEVNFFSIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF +    Y +SP Y ++L     G + L ++  +ML G++VM+
Sbjct: 257 AMSMEAKASAGIIGALPFLIGGGTYLSSPDYTSLLWTTSVGKIALVISGLWMLAGVLVMK 316

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 317 KMISFDV 323


>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 319

 Score =  186 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 101/186 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   KR  KF D   +AL I+  S+RAG     A+  +  +   P+ +EF R ++   
Sbjct: 133 LKNAKMKRLQKFNDQLGDALGIMSNSLRAGFSFLQAMDSLSKELPPPISTEFGRALKEMR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E+++ M   +   ++    T +++Q Q+GGNL+E L N+   + +R  MK +++
Sbjct: 193 LGTPTEEALANMTERIRSDDLDLIVTAVNIQRQVGGNLAEILDNIGNTISERVRMKGEIK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+  LP  +  ++   +P Y+ +L   P G +L+G A    LIGIM+++
Sbjct: 253 TLTAQGRISGTIVALLPVFLVGVISVMNPSYIGLLFTHPLGLILIGGAVISELIGIMLIK 312

Query: 181 LMINFD 186
            +IN +
Sbjct: 313 KVINIE 318


>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
          Length = 321

 Score =  186 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R +KF +  P+ALDII R ++AG P++ +   +  +   P+  EF+      +
Sbjct: 135 LQKKISDRLSKFEEQLPDALDIIRRMLQAGQPLTQSFNEVGNEMPAPIGVEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  +  K++
Sbjct: 195 YGYDLRLAIMQMADRTPTVSMLAFSSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +   +    PGY++ L  DPRG  L+      + +G + MR
Sbjct: 255 TISAESRMSAWILVLSPFVLFIAMSIIHPGYVSPLYEDPRGVGLISYGIVSLFMGSLWMR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 HIINFEV 321


>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 339

 Score =  186 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 90/187 (48%), Positives = 127/187 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK R  K ++ F +ALDIIVR VR+GLP+++ + VI  +S +P+R EF    +   
Sbjct: 153 LNFLIKGRHTKMINQFADALDIIVRGVRSGLPLNECIRVIAKESPEPLRKEFLTFADNLA 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L  S++ + + +PLQE++FF+ V+ +QS+ GGNLSEAL NLS ++R RK M+ KV+
Sbjct: 213 MGAGLERSLAALYKRLPLQEINFFAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAKASA IIGSLP  V  +V+ T+P Y+  L     GH++L VA   M  GI VMR
Sbjct: 273 ALSSEAKASAMIIGSLPIAVGVMVFLTTPDYIMTLFTTETGHVILVVAVGMMGSGITVMR 332

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 333 NMMNFDM 339


>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 337

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/185 (57%), Positives = 146/185 (78%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R   FL++FPNALDIIVR+V++GLP++DAV +I  ++ +PVR+EFRR++E Q LG
Sbjct: 153 YLRRRRVQAFLNEFPNALDIIVRAVKSGLPLNDAVRMIAVEAQEPVRTEFRRLVEAQQLG 212

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L ++E+  RM   MP  EV+FF  V+ +QSQ GGNLSEAL NLSR+LR+RK +KA+VQAL
Sbjct: 213 LPMAEAAMRMSETMPCPEVNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQAL 272

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SMEAKASA IIG+LP  V+ LVY TSP Y+  L ++  GH++LG++A +M IGI VMR M
Sbjct: 273 SMEAKASAVIIGALPIVVAALVYITSPAYIMPLFSESVGHLILGLSAVWMSIGIFVMRQM 332

Query: 183 INFDV 187
           +NF+V
Sbjct: 333 MNFEV 337


>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
 gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
          Length = 332

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/186 (47%), Positives = 125/186 (67%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   KKR A F   FPNA+D+IVR +++GLP++D + +I   S +PVR EFR++IE   
Sbjct: 146 VKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIATDSDEPVRGEFRKLIEAAQ 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + E+  R+ + +P  E +FFS VI++QS  GGNLSEAL NLS++LR+R+ M  K+Q
Sbjct: 206 MGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEALGNLSKVLRERRKMADKIQ 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S EAK S  IIG+LPF V+ +V+ TSP Y+  L     GH +L   A  M  GI+VM+
Sbjct: 266 AFSSEAKTSTMIIGALPFVVAIMVFATSPYYLVPLWTTTGGHKVLFFCAVSMGFGILVMK 325

Query: 181 LMINFD 186
            MINF 
Sbjct: 326 KMINFK 331


>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 321

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R  KF    P ALD++ R+++AG   S  + ++  +  DP+  EF + ++  +
Sbjct: 135 LMSRRKQRMEKFQRQLPEALDLVSRALKAGHAFSGGMKMVADEMDDPIGPEFDKTLDEIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S+++++  +   +   ++S+F   + +Q + GGNL++ +A+++ ++R+R  +  +++
Sbjct: 195 FGVSVADALKNLAARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E +ASA I+ ++P  V+  +   S  Y+  L +D  G +L+G+A   M+ G++VMR
Sbjct: 255 VLSAEGRASAIILIAIPIFVAAALLVVSRSYITTLADDRIGRVLIGIAVCMMIFGVVVMR 314

Query: 181 LMINFDV 187
            MI  DV
Sbjct: 315 KMIRIDV 321


>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 325

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 96/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  +  +  P A D++ R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 RCRAKRLLRLEEQLPEAADLLSRALRAGHSLPSALDMAGSELPAPIGAELALVFSEINYG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++++++ +   +P++++ +    + +Q + GGNL+E L N+  ++R R  +  KV+ L
Sbjct: 201 VPMNDALAGLTDRVPIEDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  V  +VY  +P  ++ L  DP G  +L  A     +G++ +R +
Sbjct: 261 SAEGRMGGWILTLLPPVVGVIVYELNPDLISTLWKDPTGLKMLWYAITMTCVGVIWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 332

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/179 (51%), Positives = 130/179 (72%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AKF  +FPNA+D+IVR ++AGLP+ D + VI  ++ +PV+ EF  +++ Q LG+ + E
Sbjct: 153 RFAKFTAEFPNAVDVIVRGLKAGLPMPDCLRVIATEAQEPVKGEFLAIVQDQTLGIPVDE 212

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ RM   MPL E  FF+ VI++QS+ GG+LSEAL NLS++LR+RK MKAK++A+S EAK
Sbjct: 213 AVKRMSERMPLAEAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAK 272

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +SA IIG+LPF V+  VYF SP YM +L     G ++L     +M IGI+VMR MINFD
Sbjct: 273 SSAGIIGALPFLVAGAVYFASPDYMALLFATVTGKIVLVGCGLWMGIGILVMRKMINFD 331


>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 321

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R A F    P AL++I R++RAG  ++    ++  +   P+  EF R  E Q+LG+ 
Sbjct: 139 RNRRLAHFARQLPEALELISRALRAGHSLASGFKLVADELGGPIAVEFERCYEAQNLGVP 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+I  M   +P  ++ FF+T + +Q Q GG+L+E L  +  ++R+R  +  ++QAL+ 
Sbjct: 199 LEEAIDEMTVRVPNLDLRFFATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTG 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + S  ++ +LP  +  +++  +  Y   L  DP GH +L  A    LIG +V+R ++N
Sbjct: 259 EGRLSGIVLLALPPVLFVVMWRLNQQYCMALFTDPMGHQMLAGAVVMQLIGALVIRKIVN 318

Query: 185 FDV 187
             V
Sbjct: 319 IKV 321


>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 327

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 112/185 (60%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR A F    P AL+++ R+++AG   S  + ++V + ++P+R EF++ +E  + G
Sbjct: 143 MRKAKRMAAFETQLPEALELVGRALKAGHTFSSGMGMVVSEFAEPIRGEFQKTMEEVNFG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + ++ ++  ++  +   +++FF   + +Q++ GGNL+E + N++ ++R+R  +K +++ L
Sbjct: 203 MGVTVALDNLMERVDCPDLNFFVISVKIQNETGGNLAEIVENIAWLIRERIKLKGRIRVL 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AW++  LPF V   V   +PGY+N+L  +  G   L + A  M +G++V+R M
Sbjct: 263 SAEGRMAAWVLCLLPFFVCGAVQMLNPGYLNLLFTEALGRFFLYLVAGLMTLGVLVIRKM 322

Query: 183 INFDV 187
           +  DV
Sbjct: 323 VRIDV 327


>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 321

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  +P+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEEMPEPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAIMQMTERAPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  DPRG  ++ +    + IG + +R
Sbjct: 255 TLSAESRLSAWILTLSPFVLFFGLKFVNPEYIEPLYTDPRGISMVSIGVILLAIGALWIR 314

Query: 181 LMINFDV 187
            +IN ++
Sbjct: 315 KIINIEI 321


>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 322

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 106/173 (61%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            FP ALD++ R++RAG     AV ++  + +DP+  +FR + +  + G+  +++++ +  
Sbjct: 150 QFPEALDLMSRAMRAGHSFPSAVKMVADEMTDPLGHDFRVLFDEMNYGVPTNDALANLAE 209

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P+ +VS+F   + +Q + GGNL+E L  +S I+R+R  +  +V+ LS E K SA I+ 
Sbjct: 210 RVPVPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSAIILT 269

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +LPF V  +V   +P +M VL  DP G  ++G+A   ML+GI+ MR +I   V
Sbjct: 270 ALPFGVGLVVNLVNPKFMAVLWTDPAGLRMVGLALFMMLLGILWMRSIIRIRV 322


>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 321

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  DP+ +EF+      +
Sbjct: 135 VQNRVSYRMARFEEQLPEALDIIRRALQAGQPLIQSFNEVGEELPDPIGAEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAILQMAERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRSRFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +P Y+  L NDPRG  ++ V    + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALKVANPDYIEPLYNDPRGVSMVSVGIVLLAIGALWIK 314

Query: 181 LMINFDV 187
            +I+ ++
Sbjct: 315 RIISIEI 321


>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
 gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 118/185 (63%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KRTA F   FP+A++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   +G
Sbjct: 139 FFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVVAQEVPGPVGVEFKSIVERIKIG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ E +      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+
Sbjct: 199 KTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGNLAETLSNLSEVLRKRGQMKLKIRAM 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E+KASA+I+G+LPF V  ++++ +P Y++    D R  ++      +M IG  +M  M
Sbjct: 259 SSESKASAYIVGALPFIVFAMIWWINPTYIDGFFTDERLIVIGLGGMVWMSIGAFIMAKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 337

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 123/186 (66%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +   R  KF ++FPNA+DI+VR +++GLPV D + +I  +S  P+  EF R++E   
Sbjct: 151 LGMMATGRLKKFTEEFPNAMDILVRGIKSGLPVHDGLKIISKESPAPLGPEFLRLVENVG 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S+  ++ +M   +P  E+ FF+ VI++Q++ GGNL+EAL NLS +LR RK M+ K++
Sbjct: 211 VGMSVEGALEKMSERIPSPELRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIK 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA IIG LP  V  ++  T P Y+  +  DPRG ++L   A +M +GI +MR
Sbjct: 271 ALSSEAIASASIIGVLPPGVGVMISLTRPEYIGGMFTDPRGQIMLLGGAIWMALGIFMMR 330

Query: 181 LMINFD 186
            MINF 
Sbjct: 331 KMINFK 336


>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
          Length = 321

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 102/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +F +  P AL+++ RS+RAG  ++    ++  +   P+ +EFRR  E Q  G
Sbjct: 137 FKRKRRLKRFGEQIPEALELLGRSLRAGHSLNAGFGLVGDEMEAPLATEFRRCFEEQKFG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ESI  M   +P  ++ FF+T + +Q Q GG+LSE L  +  ++R+R  +   +QAL
Sbjct: 197 IPLDESIEDMAERVPNMDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQAL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S  ++ +LP  +  ++   +  Y+ +L  D  G M LG+A    ++G + ++ +
Sbjct: 257 TGEGRMSGAVLLALPPVLFLVMLKINAEYVLMLFTDELGRMALGMALVTQVLGALAIKKI 316

Query: 183 INFDV 187
           I   V
Sbjct: 317 ITIKV 321


>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 188

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/187 (48%), Positives = 134/187 (71%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A F+++ PNA+D+IVR +R+G+P+ D + +I  ++ +P+RSEFR  +E Q 
Sbjct: 2   LSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISREAKEPLRSEFRIAMEAQA 61

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL++ ++I RM   +P+ EV+FF+ VI +Q + GGNLSEAL NLSR+LR+RK M  K+Q
Sbjct: 62  LGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMAGKIQ 121

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEAKASA IIG+LPF V+   Y +SP Y  +L     G + L ++  +M +GI VM+
Sbjct: 122 AMSMEAKASAVIIGALPFFVALATYLSSPDYTALLWTTAVGKIALVLSGLWMALGIFVMK 181

Query: 181 LMINFDV 187
            MI+FDV
Sbjct: 182 KMISFDV 188


>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 321

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR  +F    P+A++++ R++R+G  ++  + ++  +   P+   FR   ETQ+
Sbjct: 135 LSFRRKKRFKQFAKQLPDAMELMGRALRSGHSLASGLHLVCDEMPPPISQVFRSAYETQN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +  ++   ++ MP  +  FF T +++Q Q GG+L+E L  +S ++R+R  +   VQ
Sbjct: 195 LGVPVESALKESLKKMPNLDYKFFVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQ 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ ++P  +   VY+ +P Y+ VL     G  ++ V     ++G + ++
Sbjct: 255 ALTGEGRLSGAVLMAMPIAIFFAVYYLNPNYVMVLFTTDLGKKMIAVGIVMQILGAVAIK 314

Query: 181 LMINFDV 187
            +I+  V
Sbjct: 315 KIIDIKV 321


>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
 gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum PSI07]
          Length = 325

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 92/177 (51%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A D++ R++RAG     A+ +   +   P+ SEF  V    + G+ + E+++
Sbjct: 149 KLEAQLPEATDLLARALRAGHSFPSALDMAGSELPAPIASEFALVFSEINYGVPMGEALA 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              R +P++++ F    + +Q + GGNL+E L N+  ++R R  +  K++ LS E +   
Sbjct: 209 AFSRRVPIEDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRLGG 268

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           WI+  +P  +  L+YF +P  ++ L   P G  LL  A     +G++ +R ++   V
Sbjct: 269 WILSLMPPVLGVLMYFLNPTLVSSLWTHPLGIQLLWAAIIMTGVGMLWIRHLVRIHV 325


>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 288

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   P+  EF +     +
Sbjct: 102 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPISVEFGKTFSELN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 162 YGVDIKVALANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL +    M++G++ +R
Sbjct: 222 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITGVCMILGMIWIR 281

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 282 KILRIEV 288


>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 232

 Score =  183 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 46  LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 105

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 106 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 165

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R
Sbjct: 166 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 225

Query: 181 LMINFDV 187
            +I+F+V
Sbjct: 226 KIISFEV 232


>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
 gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
          Length = 323

 Score =  183 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 117/185 (63%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             IKKRT +F   F +A++++VR +R+GLPV++ + V+  +   PV  EF+ ++E   +G
Sbjct: 139 RAIKKRTNQFNVKFADAIELLVRGLRSGLPVTETLNVVSQEIPGPVGEEFKSIVERIKIG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ ES+      + + E +FF   +++Q + GGNL+E L+NL+ +LR R  MK K++A+
Sbjct: 199 RTMEESLQETADRLGIPEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAM 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E+KASA+I+GSLPF V  L+++ +P Y+     D R  +       +M IG+ +M  M
Sbjct: 259 SSESKASAYIVGSLPFIVFGLIFWINPEYLGGFFTDDRLIVTGLGGLTWMGIGVFIMAKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 321

 Score =  183 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 104/184 (56%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  +F    P+ALD+I R+++AG      + ++  + +DPV  EF+  ++  + G+
Sbjct: 138 RRTRRMNRFHRQLPDALDLIARALKAGHAFPQGMRMVADEFADPVGPEFQITLDEINFGV 197

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   ++  M R +   ++ FF   +++Q + GGNL+E ++ ++ +LR+R  +  +V+ LS
Sbjct: 198 SPDAALHAMTRRVDCADLRFFVVSVNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLS 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +AWI+ +LPF +  +++  +P +M+ L   P G+MLL  +   M  G + ++ + 
Sbjct: 258 AEGRLTAWILFALPFGIGFIIHLLNPDFMSALYTTPEGNMLLNGSLFLMTAGALALKKLT 317

Query: 184 NFDV 187
              V
Sbjct: 318 TIRV 321


>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
 gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
          Length = 313

 Score =  183 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 105/186 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R A F    P+ALD++ RS+RAG      + ++  +   P+ +EFR V+E   
Sbjct: 127 LSWRAAARRAHFQRQLPDALDMMARSLRAGHAFLAGMKIVAEEFPAPIGAEFRSVVEEVA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S++E++ R+   +    ++FF T + +Q + GGNL+E L  +SR+ R R  + AKV+
Sbjct: 187 FGVSVTEALQRLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA I+ +LPF +  L+   +P Y+ +L  DP G  ++ V    MLIG +V +
Sbjct: 247 AVSAEGRLSAVILFALPFALGGLLLIINPDYVLLLFRDPIGRAMVTVGGVLMLIGGVVTK 306

Query: 181 LMINFD 186
            M+   
Sbjct: 307 RMVTVR 312


>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
 gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
          Length = 322

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/187 (49%), Positives = 138/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R AKF++ FP ++DII+R ++AGLPV D   +I  ++ +PVRSEFR+++E+Q 
Sbjct: 136 LGFLARRRVAKFIEAFPGSVDIIIRGIKAGLPVGDCFRMIASEADEPVRSEFRQIVESQT 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS+ E+  R    MP+ E SFFS VIS+Q + GGNLSEAL+NL+ +LR+RK MKAKV+
Sbjct: 196 IGLSIGEATERFAERMPVAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S EAKASA IIGSLPF V   V+FT+  YM VL +   G+M++  +  +M +G+ +M+
Sbjct: 256 AMSAEAKASAGIIGSLPFLVGLAVWFTNKPYMAVLFDTTVGNMIIAGSLLWMAVGVFIMK 315

Query: 181 LMINFDV 187
            MI+F++
Sbjct: 316 NMIDFEI 322


>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 314

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M +L ++R A F +  P  L+I+VRS+RAG P+  A  +   Q  DP  SE     +   
Sbjct: 128 MYYLRRRRVAAFGEQLPELLEIMVRSLRAGHPLVVAFTLAAKQMPDPAGSEIGITADEIG 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  ++  + R +  +++ FF+T +++Q+Q GGNL+E LA L+ +LR+R  ++ +V+
Sbjct: 188 YGRDVGAALYNLYRRVGFEDLRFFATAVTIQAQTGGNLAEILARLATLLRERARLRQRVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA  +   PF ++ L+   +P Y   +  +P   + L VA   ++IG +V+ 
Sbjct: 248 ALSAEGRLSALALSLFPFLLAGLITLLNPDYYGSVWGNPLFDLALTVAGGMLIIGNIVLY 307

Query: 181 LMINFDV 187
            ++NF +
Sbjct: 308 RIVNFRI 314


>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 324

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 110/186 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF    P+ALD+IVRS+RAG P + A+ ++  +  DP+ +EF  V +   
Sbjct: 138 LRRARNKRIQKFAAQLPDALDMIVRSLRAGHPTTVAIGLVAREMPDPLGTEFGIVSDEIT 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GLSL +++ ++ + +  + +   S  +S+Q++ GGNL+E LANLS +LR+R+ ++ K++
Sbjct: 198 FGLSLEQAVRKLSQRVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWII   P  +  ++   +P +   + + P    +  +   + L+G  +M 
Sbjct: 258 ALSAEGRMSAWIISLFPVVMFGILLLVAPKFYGEVWDSPLILPVFVIFGLWALLGDFIMY 317

Query: 181 LMINFD 186
            M+NFD
Sbjct: 318 RMVNFD 323


>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
          Length = 321

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 108/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G
Sbjct: 137 RKRDRRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ L
Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M
Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316

Query: 183 INFDV 187
               V
Sbjct: 317 TTIRV 321


>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
 gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
          Length = 323

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/186 (33%), Positives = 111/186 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF    P+ALD+IVRS+RAG P + A+A++  +  DP+ +EF  V +   
Sbjct: 137 LRSARDKRIKKFAVQLPDALDMIVRSLRAGHPTTVAIALVAREMPDPLGTEFGIVSDEIS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GLSL +++ ++   +  + +   S  +S+Q++ GGNL+E L+NLS +LR+R+ ++ K++
Sbjct: 197 FGLSLEQAVRKLSERVGFEGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWII   P  +  ++   +P +   +  +P    +  +  ++ L+G  +M 
Sbjct: 257 ALSAEGRMSAWIISLFPLLMLGVLSIAAPSFYGDVWGNPIVVPVFVIFGSWALLGDFIMY 316

Query: 181 LMINFD 186
            M+NFD
Sbjct: 317 RMVNFD 322


>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 309

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 99/186 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR  KF D   ++L ++   +RAG  +  AV  +  Q+  P   EF R++    
Sbjct: 123 LSFLAGKRRKKFADQLDDSLQLLSGGLRAGHSLQRAVDAVSQQAPSPTAEEFSRIMNETR 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L++++ +    M  ++ S+ S  I +  ++GG+L++ L  + R +R+R  ++ +V+
Sbjct: 183 IGRDLTDAMDQTAERMKSEDFSWVSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVK 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA+++ +LP  +  ++   SP Y+    + P G  ++      M +G + ++
Sbjct: 243 ALSAEGKMSAYVLMALPVLIIGVLAIISPSYIVSFGSSPLGWGMVAGGILMMTVGGLWLK 302

Query: 181 LMINFD 186
            +++F 
Sbjct: 303 KIVSFK 308


>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 324

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 113/185 (61%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR   F+   P+ALD++VR +R+GLPV++ + V+  +   PV  EF+ V +   +G
Sbjct: 140 RAINKRIDNFVTRLPDALDLLVRGLRSGLPVTETLGVVAAELPGPVGEEFKLVTDRIKVG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ E++      + L E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+
Sbjct: 200 RTMEEALQDTADRLNLPEFNFFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAM 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E+KASA+I+G+LPF V  L+Y+ +P Y+     D R  +       ++ IG  +M  M
Sbjct: 260 SSESKASAYIVGALPFIVFALIYWINPVYLGKFFVDERLIIAGLGGLTWLGIGAFIMAKM 319

Query: 183 INFDV 187
           ++F++
Sbjct: 320 VSFEI 324


>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 320

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 1/184 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R+ K  +  P AL+++ RS+RAG  ++ A  V+ G+  +PV  EF R  + Q LGLS
Sbjct: 137 RSRRSQKISEQLPEALEMMARSLRAGHALTSAFQVVAGEMPEPVCVEFARSYDEQRLGLS 196

Query: 65  LSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           L +++  M    P   +V  F+    +Q + GGNL+E L  +S  +R R     K++AL+
Sbjct: 197 LEQAVLHMAERCPGNSDVKIFAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALT 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +ASAW++G LPF V+  V   +PGY+  L  +P GH ++G A     +GI+ +R + 
Sbjct: 257 GEGRASAWVLGLLPFIVALAVSVMNPGYLRTLAENPSGHWIVGYAIVSWAVGIVWLRRLT 316

Query: 184 NFDV 187
             ++
Sbjct: 317 QLEI 320


>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
          Length = 322

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNSKAKKRMAKIEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVEDPLATEFGIIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P  V      + P Y + +I+ P       +    +   I VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFVLAGTLVSDPHYYDNVIDHPWFMPACFIVGGMLTANIFVMR 315

Query: 181 LMINFDV 187
            + N  V
Sbjct: 316 KLTNIQV 322


>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 321

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 108/185 (58%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R A+F    P+ALD++ R++RAG   +  + ++  +  DP+  EF++V++  + G
Sbjct: 137 RKRARRMARFQRQLPDALDLVGRALRAGHAFNQGMRMVADEFEDPIGPEFQKVLDEINYG 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    ++  +VR +   ++ FF   +++Q + GGNL+E +  ++R++R+R  +  +V+ L
Sbjct: 197 VPADTALINLVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +AWI+ +LPF +  ++   +P +M+VL   P G++L+  +   M IG + ++ M
Sbjct: 257 SAEGRLTAWILLALPFGIGIIINMLNPDFMSVLYETPEGNLLMTGSLFQMTIGAIALKRM 316

Query: 183 INFDV 187
               V
Sbjct: 317 TTIRV 321


>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 325

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 98/174 (56%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R  K     P+  D+I R++R+G   + A+ ++  +  +P+  EFR   +  + G+S
Sbjct: 143 RRRRMLKLERQLPDVCDMIARALRSGHSFTSALGMVGEEFPEPMSGEFRITFDEINYGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+ LS 
Sbjct: 203 LHDALVNLATRVPANDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSA 262

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M  G++ 
Sbjct: 263 EGRLSAWILGLLPFGTAGMMAVLNREFLSVLWQDPAGVKMVGAMLTSMAFGLLW 316


>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 324

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  +KR   F + F  ALD++ R++  G P ++ +  +  +   PV  EF +     +
Sbjct: 138 LKYKAEKRLCLFEEQFVEALDVMKRALLVGYPFTEVMKTVSQEMPAPVSVEFGKTFSELN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +++ + +  P   V  F++ + +Q + GGNL+E L NLS ++R R  +  KV+
Sbjct: 198 YGVDIKVALANLAQRNPSVSVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SAWI+  +PF +  ++Y ++P Y++ L    RG  LL + A  ML+G++ +R
Sbjct: 258 SLSAEGRMSAWILMCVPFVLVIMIYLSTPDYLDPLFESDRGANLLMITAVCMLVGMIWIR 317

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 318 KILRIEV 324


>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 327

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 100/181 (55%), Gaps = 1/181 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF    P+ALD++ R+++AG      + ++  +  DP+  EF +V+E  + G+ + E
Sbjct: 147 RMKKFDAQLPDALDLMARALKAGHAFPGGIQMVAKEFDDPIGIEFAKVVEETNFGVGVEE 206

Query: 68  SISRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++  +        ++ FF+  + +Q + GGNL+E L +++RI+R+R  +   ++ LS E 
Sbjct: 207 ALRNLANRFDSSSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEG 266

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA I+ ++PF V+  +   +P Y+ VL  DP G  L   +   M +GI +M+  I   
Sbjct: 267 RLSAIILVAIPFFVAFALSIMNPQYITVLATDPIGKALAFTSLVMMAVGIYIMKKTIQIK 326

Query: 187 V 187
           V
Sbjct: 327 V 327


>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 322

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 116/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  KR + F   FP A++++ R++RAG   S  + ++  +  +PV SEF +  E   
Sbjct: 136 VSKIKAKRLSVFESQFPEAVELVGRALRAGHSFSAGLRMVGEELGEPVASEFNKTFEDYS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++ E+++ +VR + L++V FF++ +S+Q + GGNL+E L N++ I+R+R  ++  V+
Sbjct: 196 FGKTMEEALTGLVRRVELEDVKFFASAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + S WI+  +P  +  ++Y+++P Y+N+ + +P G  +L   A   ++GI+V++
Sbjct: 256 ALSAEGRLSGWILSLMPPALFAMLYWSTPEYINMALGNPIGQTILLSGACLEVLGIVVIK 315

Query: 181 LMINFDV 187
            +I   V
Sbjct: 316 QIIKMRV 322


>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
           JL354]
          Length = 323

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 120/185 (64%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             +K+RTA+F   FP+A+D++VR +R+GLPV++ +AV+  +   PV  EF+ +IE   +G
Sbjct: 139 FFMKRRTAQFNARFPDAIDLLVRGLRSGLPVTETLAVVAQEIPGPVGIEFKGIIERIKIG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ E++      + + E +FF   +++Q + GGNL+E L+NLS +LR R  MK K++A+
Sbjct: 199 RSMEEAMQESADRLGIAEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAM 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E+KASA+I+GSLPF V  ++++ +P Y+     D R  +       +M +G+ +M  M
Sbjct: 259 SSESKASAYIVGSLPFLVFAMIWWVNPSYLGAFFIDERLMIAGIGGLVWMSLGVFIMSKM 318

Query: 183 INFDV 187
           ++F++
Sbjct: 319 VSFEI 323


>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 323

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 99/176 (56%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F+   P  LD++ RS++AG   +  + +   +  DP+  EF   ++  + G+ + +++ +
Sbjct: 148 FMAQLPEGLDLLARSLKAGHAFTTGMKLAAEEFGDPLGPEFDVALDEINFGVPVPDALRK 207

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   +++FF   + +Q + GGNL+E + +++ ++R+R     KV+AL+ E   S W
Sbjct: 208 MTYRVDCPDLNFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSMW 267

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++  LPF +  ++ F +P Y+ +L  +  GH+++  A   M+IG   MR ++  DV
Sbjct: 268 VLIGLPFAIVGILTFMNPEYITLLFEETMGHIMIAGALIMMIIGYFFMRNIVKIDV 323


>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
           gilvum SL003B-26A1]
 gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
           gilvum SL003B-26A1]
          Length = 339

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 88/186 (47%), Positives = 132/186 (70%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   FL++ PNA+DIIVR V+AGLP+ D + ++  ++ DPV  EFR+++E Q 
Sbjct: 153 LARRRRKRFDAFLNELPNAVDIIVRGVKAGLPLGDCIKIVASEARDPVAGEFRKIVEAQV 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L+E++ R+   +PL E +FF+ V+++Q Q GG LSEAL NL ++LR RK +K K++
Sbjct: 213 MGLTLTEAVGRLPDRVPLAEANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIR 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EAK+SA IIGSLPF VS ++Y  +P Y+ +L  +  G+M++     +M IG MVM+
Sbjct: 273 ALSSEAKSSAAIIGSLPFIVSLILYLIAPDYIMLLFTETAGNMIIAGGLLWMFIGSMVMK 332

Query: 181 LMINFD 186
            MINFD
Sbjct: 333 NMINFD 338


>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 322

 Score =  180 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR AK  +  P+ ++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNSKAKKRMAKLEEQLPDGVELMVRSLRVGHPFSSAVQIVAKEVDDPLATEFGIIADECS 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P           P Y + +++ P       +    +   I VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFTLGGTLVMDPHYYDSVLDHPWFMPACFIVGGMLTANIFVMR 315

Query: 181 LMINFDV 187
            + +  V
Sbjct: 316 KLTDIQV 322


>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 323

 Score =  180 bits (458), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KR   F+  FP+AL+++VR +R+GLP+S+ + V+  +   PV  EF+ V +   
Sbjct: 137 VSWAINKRINNFITRFPDALELLVRGLRSGLPISETLVVVANELPGPVSEEFKIVTDRIR 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++      + L E SFF   +++Q + GGNL+E LANL+ +LR R  MK K++
Sbjct: 197 LGRTMEDALQETADRLDLAEFSFFCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  L+Y  +P Y+     D R  +       ++ +G  +M 
Sbjct: 257 AMSSESKASAYIVGSLPFIVFALIYSINPRYLGQFFVDERLMVAGIGGLIWLSMGAFIMS 316

Query: 181 LMINFDV 187
            M+NF++
Sbjct: 317 RMVNFEI 323


>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 322

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEMSAPLGPEFLNTFNMLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS+ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLIRPEYIELLHTTPMGVKMIIGGMVSLFIGTIWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 321

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++     R  +F    P+ALD+I R+++AG   +  + ++  + +DP+  EF++ ++  +
Sbjct: 135 VQRKRNARMGRFQRQLPDALDLIARALKAGHAFNQGMRMVADEFADPIGPEFQKTLDEIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+    ++  + R +   ++ FF   +++Q + GGNL+E + N++R++R+R  +  +V+
Sbjct: 195 FGIPADAALYNLTRRVDCPDLKFFVVSVNIQRETGGNLAEIVTNIARLIRERFKLAGRVR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + +AWI+  LPF +  ++   +P +M+ L   P G+MLL  +   M IG + ++
Sbjct: 255 VLSAEGRLTAWILFVLPFGIGFIINLLNPDFMSALYATPEGNMLLTASLFQMAIGGIALK 314

Query: 181 LMINFDV 187
            +    V
Sbjct: 315 RLTTIRV 321


>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  +
Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++ 
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMMNREFLSVLWQDPAGIKMVGVMLGSMAFGLLW 316


>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 321

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  +F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRITDRLNRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGNEMAPPIGIEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAWI+   PF +   + F +P Y+  L  D RG  L+ +    +  G + +R
Sbjct: 255 TISAESRLSAWILVLSPFVLFVGLMFINPEYVKPLYQDERGMELVTMGIVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 315 NIINFEV 321


>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
           solanacearum CFBP2957]
          Length = 325

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   PV  E   V    + G+S++++++ +
Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPVGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
           bermudensis HTCC2601]
 gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. HTCC2601]
          Length = 321

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 105/183 (57%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A   +  P+A++++VRS+R G P S A+AV+  +  DP+ +EF  + +    G  
Sbjct: 139 AKKRLALIEEQLPDAVELMVRSLRVGHPFSSAIAVVSKEIKDPLATEFGVIADESTYGRD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ES+  M   + +Q++ F +  +S+Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 199 IGESLKHMAERLDMQDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ S   +   P  V  ++  T P Y + +++ P       + A F+ + +MVMR+++N
Sbjct: 259 EAQWSGKFLSGFPVGVLLVIQLTDPHYYDEVLDHPWFVPACFIVAVFLALNLMVMRMLVN 318

Query: 185 FDV 187
             V
Sbjct: 319 IKV 321


>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 323

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 108/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +  +
Sbjct: 137 IRIKRQKRLAKFNSQISDALVIMSNSLRSGFSFLQAMDMVRKELPNPISKEFGRTFQEMN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E++  M + +   ++    T + +Q Q+GGNL+E + N++  +R+R  +K +++
Sbjct: 197 LGTQAEEALENMAQRVKSDDLDLLITAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S ++IG LPF ++T++   SP Y+  L N   G +++G+A    +IG+M ++
Sbjct: 257 TLTAQGRISGFVIGLLPFGLTTVMITISPSYILTLFNSQLGLLMMGMAIISEVIGVMFIK 316

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 317 KIVNIEV 323


>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
 gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
          Length = 322

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LSRILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYIIISLVRPDYIELLHTSPMGIKMVIGGMISLFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
 gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
          Length = 322

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFMNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
           [Ralstonia solanacearum UW551]
 gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 325

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ +
Sbjct: 151 ETQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 316

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 99/186 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R A+F     + L ++   +RAG  V  A+  +  ++S+P  +EF RV+    
Sbjct: 130 LSFLTQRRRARFEAQLGDTLTMVSGGLRAGHSVLRAIDAVAQEASEPTATEFSRVVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L +S++ +   M  ++ ++ +  I +  ++GG+L+E    +   +R+R  +K  V+
Sbjct: 190 LGRDLQDSLNDVSLRMKSEDFNWMAQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E K SA I+ +LP  +  L+   +P Y   L   P G M+LG+A   M IG + +R
Sbjct: 250 ALSAEGKLSAIILMALPVLLFILIGLANPKYSGQLTGHPIGWMMLGIAVVMMTIGGLWIR 309

Query: 181 LMINFD 186
            + +  
Sbjct: 310 KISDLK 315


>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
 gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
          Length = 322

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R ++F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      +
Sbjct: 136 LNKRISDRLSQFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +SR+LR R  ++ K++
Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   +P Y+  L  DPRG  L+      + IG M +R
Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLSIINPTYVEPLYTDPRGMTLVSGGIVSLFIGSMWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 NIINFEV 322


>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
 gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
          Length = 327

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 117/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +RT KF+  FP+A++++VR +R+GLP+++ ++V+  +   PV  EFR V +   
Sbjct: 141 VSMTINRRTTKFIARFPDAIELLVRGLRSGLPITETMSVVGQEIPGPVGDEFRAVSDRMK 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++  ++      +   E  FF   I++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 201 IGRTMDAALQETADRLETPEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+IIG+LPF V  +++  +  YM     DPR  ++ G    +M +G+ +M 
Sbjct: 261 AMSSESKASAYIIGALPFVVFAMIWMINAPYMARFFVDPRLMIIGGGGLLWMALGVFIMS 320

Query: 181 LMINFDV 187
            MINF++
Sbjct: 321 RMINFEI 327


>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  +P+  EFR   +  +
Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPEPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++GV    M  G++ 
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMVNREFLSVLWQDPAGIKMVGVMLGSMAFGLLW 316


>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 323

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  KF    P+++D++ R++RAG  V+ A+ V+  Q  +PV SEF  V   Q+
Sbjct: 137 LNFQRAQRLKKFNAALPDSIDLLGRALRAGHSVASAIEVVSEQGQEPVASEFGEVFRAQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL   +++ ++   +P  ++ F  T + VQ + GGNL+E L   + ++R+R  ++ +V+
Sbjct: 197 FGLPFRDAMLQLAERVPSSDLRFLVTAMMVQKETGGNLTEILDRTTYVIRERLRIQGEVK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + +  I+  LP  +  L+   +P Y   L  DP G  +L   A  + +G   + 
Sbjct: 257 TKTAQGRLTGVILALLPIILGILINVINPDYAKPLFTDPLGKKMLYAGAGLISVGAFFIN 316

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 317 KIVKIEV 323


>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
 gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
          Length = 321

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +  R A+F +  P ALDII R+++AG P+  +   +  +  DP+  EF+      +
Sbjct: 135 VQNRVTYRMARFEEQLPEALDIIRRALQAGQPLVQSFNEVGEELPDPIGVEFKNTYNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M   +P   +  FS+ + +Q + GGNLSE L  +S +LR R  ++ K++
Sbjct: 195 YGYDLRLAILQMTERVPTVSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   +   SP Y+  L  DPRG  ++ V    + IG + ++
Sbjct: 255 TLSAESRLSAWILTLSPFGLFFALRVASPEYIEPLYKDPRGLSMVSVGIVLLAIGALWIK 314

Query: 181 LMINFDV 187
            +I+ ++
Sbjct: 315 KIISIEI 321


>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 322

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 137/187 (73%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLP+ D + +I  ++ DPV++EFR ++E+Q 
Sbjct: 136 LAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPDPVKTEFRAIVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL L E+ +++   MP+ E +FF+ VI +QS+ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 IGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L Y +SP Y+++L     G + +  +  +MLIG++VM+
Sbjct: 256 AMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWTTQVGQIAIAASGLWMLIGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 322

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 108/185 (58%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KR  KF    P+ALD+IVRS+RAG P S A+ ++  +  DP+ +EF  V +    
Sbjct: 137 RRARNKRIRKFAKQLPDALDMIVRSLRAGHPASVAIGLVAREMPDPLGTEFGIVSDEITF 196

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLS+ +++ ++ + +  + +   S  +S+QS+ GGNL+E LANLS ++R+R+ ++ K++A
Sbjct: 197 GLSIEQAVRKLSQRVGFEGLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRA 256

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS E + SAWII   P  +   +   +P Y   + ++P    +  +   + L+G  +M  
Sbjct: 257 LSAEGRVSAWIISLFPIVMFFTLQILAPTYYGAVWSNPLVFPVFLIFGLWALLGDFIMYR 316

Query: 182 MINFD 186
           M+ FD
Sbjct: 317 MVTFD 321


>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 320

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR A+F     +AL I+  S+RAG     A+ ++  +   P+  EF R +   +
Sbjct: 134 VKAAKQKRVARFNAQIGDALIIMANSLRAGFSFLQAMELVSKEMPAPISVEFARALREMN 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +   +  +++    T + +Q Q+GGNLS+ L  +S  +R+R  +K +++
Sbjct: 194 LGTATEEALQNLCNRVESEDLDLVITAVLIQRQVGGNLSQILEGISHTIRERVRIKGEIK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+G+LP  +  ++   +PGY+ +L +D  G +L+       LIG+ +++
Sbjct: 254 TLTAQGRISGMIVGALPVGMGLILAVINPGYIGILFSDSLGLVLIVAGVILQLIGVALIK 313

Query: 181 LMINFDV 187
            +++  V
Sbjct: 314 KIVDIKV 320


>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 322

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 322

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+R A   +  P+A++++VRS+R G P S A+ ++  + +DP+ +EF  + +   
Sbjct: 136 VNKKAKQRLAMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEFGMIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E++  +   M +Q++ F +  +S+QSQ GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVTEALKELAERMDMQDLRFLAVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   PF     +    P Y   + + P       V A F+ I I+ M+
Sbjct: 256 AITAEAKWSGMFLSGFPFLALVGINLMEPDYYADVKDTPAFIPACVVVAVFLTINIIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 MMVNIKV 322


>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
 gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
          Length = 325

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 94/175 (53%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
               P A D+I R++RAG  +  A+ +   +   P+  E   V    + G+S++++++ +
Sbjct: 151 EAQLPEATDLISRALRAGHSLPSALEMAGDELPQPIGPELAIVFGQINYGVSMNDALAGL 210

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           +  +P+ ++ +    I +Q + GGNL+E L N+  ++R R  +  KV+ LS E +   WI
Sbjct: 211 IDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRLGGWI 270

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +LP  ++ +VY  +P  M+ L  DP G  ++  A A    G++ +R ++   +
Sbjct: 271 LTALPPAMAVVVYQLNPELMSTLWKDPVGIHMMWYAIAMTCFGVLWIRHIVRIHI 325


>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
 gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
          Length = 317

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 104/179 (58%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF +  P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G++L +
Sbjct: 138 RIRKFAEKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYGVTLDD 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+++S E +
Sbjct: 198 ALMNLNDRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +A  +   PF +  ++   +P Y + + +   G +++      M IG +++  M+NF+
Sbjct: 258 ITAIFMSLYPFLLFGMIRTLAPTYFDPVWDSGYGTIIVSSLLVVMAIGNVILYKMVNFE 316


>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 328

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 102/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR A F +  P+ALD + R++RAG P ++ + ++  +   PV  EF       + G  
Sbjct: 146 RNKRFAAFEEGLPDALDAMCRALRAGHPFNETLRLVAEEHKGPVAQEFGMTFSDINYGND 205

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  ++  MP   V    T I +  + GGNL+E L  LSR++R R   + K++ LS 
Sbjct: 206 VRRAMLGLLERMPSMTVMMLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSA 265

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAW++ ++PF ++  +  TSP YM VLINDP GH L+  A   MLIGI  ++ +I 
Sbjct: 266 EGRMSAWVLVAIPFVLAIAIVLTSPSYMPVLINDPIGHKLIIGAFCAMLIGIFWIKKIIR 325

Query: 185 FDV 187
             V
Sbjct: 326 IQV 328


>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 323

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR AKF     +AL I+  S+R+G     A+ ++  +  +P+  EF R  +   
Sbjct: 137 LRMARQKRLAKFNAQIGDALVIMANSLRSGFSFLQAMDMVRKELPNPISREFGRAFQEMS 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E++  M + +   ++    T + +Q Q+GGNL+E L N++  +R+R  +K +++
Sbjct: 197 LGTPTEEALQNMAQRVKSDDLDLVITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +++ + + S  +IG LPF ++ L+   SP Y+  L N   G +++  A    +IG++ ++
Sbjct: 257 SITAQGRISGMVIGFLPFALAALMLVISPQYIMTLFNSKIGLIMVASAIFSEVIGVVAIK 316

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 317 KIVDIEV 323


>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 279

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/184 (47%), Positives = 121/184 (65%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+R A+F   F +ALDI+VR +R+GLP+ + +A+I  +  +P+  EFR V+E Q LG
Sbjct: 95  WLGKRRIARFTTLFADALDIVVRGLRSGLPLGECMAIIGREVPEPLGPEFRLVMEGQKLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL ES++R V   P  +  +F+ V+ +Q Q GGNL+E LA LS +LR RK M+ K++A 
Sbjct: 155 LSLEESLARAVERTPTADFKYFAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAF 214

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EA ASA IIGSLP  V+ L+    P Y+ +L + P GH+LL      M +G +VMR M
Sbjct: 215 SSEATASAMIIGSLPVVVALLLTAVGPDYIGILFSTPTGHLLLASGGLLMGMGALVMRKM 274

Query: 183 INFD 186
           INFD
Sbjct: 275 INFD 278


>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 322

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++ A   +  + S P+  EF       +
Sbjct: 136 LQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGREVSAPLGPEFLNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFALYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 329

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H   +R   F     +AL I+  ++RAG     A+  +  +   P+ +EF   +    
Sbjct: 143 LQHKKGERLKTFNQQLGDALVIMANALRAGFGFQQAMETVRRELPPPISTEFEWTLREIQ 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  ES+  +   +   ++    T + +Q Q+GGNL++ L N+SR +RDR  +K +++
Sbjct: 203 LGSTTEESLLNLCERVKSDDLDMVVTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIR 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +  ++   +PGYM   + +P G  LL  AA   L G+ V++
Sbjct: 263 TLTAQGRLSGIIIGLLPIALLFILLILNPGYMTPFLQNPLGLYLLSGAAVSELAGLYVIK 322

Query: 181 LMINFDV 187
            +++ DV
Sbjct: 323 KIVDIDV 329


>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 317

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAIALVAREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LR R  +KAKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + L +   G  ++ V    M IG +++  M
Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPLWDSGYGTAVVSVLLVVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 101/178 (56%), Gaps = 1/178 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+H   +R  K     P+  D+I R++R+G   S A+ ++  +  DP+  EFR   +  +
Sbjct: 140 MRH-RNRRMLKLERQLPDICDMIARALRSGHSFSSALGMVGEEFPDPMGGEFRITFDEIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL +++  +   +P  ++ +F   + +Q + GGNL+E L +++ ++R+R  +  KV+
Sbjct: 199 YGVSLHDALVNLATRVPAHDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            LS E + SAWI+G LPF  + ++   +  +++VL  DP G  ++G     M +G++ 
Sbjct: 259 VLSAEGRLSAWILGLLPFGTAAMMAMLNREFLSVLWQDPAGIKMVGAMLGSMALGLLW 316


>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 322

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ SEF  + +   
Sbjct: 136 VNSKAKKRMSLIEEQLPDAVELMVRSLRVGHPFSSAIQIVSREVADPLGSEFGIIADENA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  +   + LQ++ F +  +++Q Q GGNL+E LA L+ ++R R  +  +V+
Sbjct: 196 YGRDMGEALKDLAERIGLQDLRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P      +    P Y + +++ P         A F+ + ++VMR
Sbjct: 256 AITAEAQWSGMFLSAFPIVALIAINVMDPHYYDEVMDHPFFLPACFAVAGFLGVNLIVMR 315

Query: 181 LMINFDV 187
            +++  V
Sbjct: 316 KLVDIKV 322


>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
          Length = 317

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKKFELKLPEALDVANRSLAAGHPLPAAISLVGREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + ++++   +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLDLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + + +   G  ++    A M +G +++  M
Sbjct: 253 SSEGRITAIFMSVYPFLLYAMIKALSPTYFDPVWDSGHGTTVVCALLAVMAVGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 321

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R ++F +  P+ALDII R ++AG PV+ A   +  + + P+  EF+      +
Sbjct: 135 LQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAFNEVGKEMAAPIGLEFKNTFNLLN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  F++ + +Q + GGNLSE L  + ++LR R  +  K++
Sbjct: 195 YGYDMRLAIMQMAERTPTVSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  D RG  ++ V    +  G + +R
Sbjct: 255 TLSAESRLSAWILVLSPFVLFIGLMFINPDYVTPLYQDARGMEMVSVGMVSLFFGAIWIR 314

Query: 181 LMINFDV 187
            +I+F+V
Sbjct: 315 KIISFEV 321


>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 324

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP ALDI+ R ++AG    DA+ +   +   P+  EF+ +    +
Sbjct: 138 LNRDFNKRMEKIEEQFPEALDILRRGIQAGYAFPDAIKLTYEEMDGPIAYEFKVMFAEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++   +  +P      FST + VQ + GGNL+E L NL+RI+R R   + +V+
Sbjct: 198 YGKDTRRALLHFIERVPSVSAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S + + SAW++  +P  +   +Y +SP Y   L +   G+ LL +A   MLIGI  + 
Sbjct: 258 TFSAQGRMSAWVLVCVPLALFGYLYLSSPTYARELTDTEIGNTLLTIAGIGMLIGIYWIS 317

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 318 RLIRIEV 324


>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
 gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
           HTCC2503]
          Length = 330

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/187 (45%), Positives = 128/187 (68%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF ++F NA+D+IVR V++GLPV++ + +I   +  PV+ EF+ ++E Q 
Sbjct: 144 LYQTRRKRQKKFENEFSNAIDVIVRGVKSGLPVNECLKIISRDAQSPVKEEFQLLVEGQR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L +S+ R+   MP+ +V+FF+ V+ +Q Q GGNL++AL NLS +LR RK M  K+ 
Sbjct: 204 IGLTLEQSLERLYNRMPISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIA 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA I+ ++PF VS LVY  +P Y+  L +   G  +L  A  +MLIGI+VM+
Sbjct: 264 ALSMEAKASAAILAAMPFFVSGLVYLAAPDYIAPLFSTQTGQFMLMGAGMWMLIGIVVMK 323

Query: 181 LMINFDV 187
            MI+  V
Sbjct: 324 NMISIKV 330


>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
 gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
          Length = 322

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFTSAVQIVANEVEDPLATEFGIISDECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDIGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    P Y + +++ P            +   + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLAGILVKDPNYYDKVLDHPWFIPACFTVGVMLTANLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
 gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
          Length = 654

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF    P+ L ++  ++ +G  ++ A+  +   S+ P   EF R +    
Sbjct: 468 LRMLAGRRAKKFEQMLPDILMLVATTLASGFSLTQALDAVARDSAQPAGKEFSRTLAETR 527

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +S+++  M   M  + + + +  I +Q  +GGNL++ L   +  LR+R+++K +V 
Sbjct: 528 IGADVSDALENMSVRMDSEAMRWTTMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVN 587

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +LS E + SA+I+  LP  +   + +++P Y ++L     G ++L  +   M+IG + MR
Sbjct: 588 SLSAEGRLSAYILLGLPILLFVYMAWSNPAYTSLLWTRTVGILMLLGSGVSMVIGTLWMR 647

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 648 KVIQIEV 654


>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 322

 Score =  177 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R A F +  P ALDI+ R ++AG PV+ A   +  +  DP+ +EF+      +
Sbjct: 136 LNKRISDRLASFEEQLPEALDIMRRMLQAGQPVTQAFNEVGNEMPDPIGTEFKNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  +I +M    P   +  FS+ + +Q + GGNLSE L  +S++LR R  ++ K++
Sbjct: 196 FGYDMRMAIMQMAERTPTVSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E++ SAWI+   PF +   + F +P Y+  L  DPRG  L+      + IG + +R
Sbjct: 256 TLSAESRLSAWILVLSPFLLFLFLTFINPSYVEPLYTDPRGMTLVSGGIISLFIGSIWIR 315

Query: 181 LMINFDV 187
            +INF+V
Sbjct: 316 NIINFEV 322


>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 317

 Score =  177 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/184 (30%), Positives = 103/184 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R   F    P ALD+  RS+ AG P+  A+A++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMKAFELKLPEALDVATRSLAAGHPLPAAIALVGREMPDPIGTEFGLLTDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  ++AKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + + +   G  L+    A M IG +++  M
Sbjct: 253 SSEGRITAIFMSIYPFLLYAMIRALSPTYFDPVWDSGHGTTLVCALLAVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 321

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 98/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR +   +  P+A++++VRS+R G P + A+ ++  +  DP+ +EF  + +    G  
Sbjct: 139 AKKRLSMIEEQLPDAVELMVRSLRVGHPFTSAITIVSKEIKDPLATEFGIIADESAYGRD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 199 IGEALKHMAERLDMQDLRFLAVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ S   +   P      +    P Y + +++ P       +    + + ++VMR ++N
Sbjct: 259 EAQWSGKFLSGFPVMALIFIQVAKPDYYDEVLDHPWFIPACFIVGIMLALNMIVMRWLVN 318

Query: 185 FDV 187
             V
Sbjct: 319 IKV 321


>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
 gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
          Length = 325

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 322

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +   
Sbjct: 136 VNHKAKKRMALLEEQLPDAVELMVRSLRVGNPFVSSIQIVANEVQDPLGTEFGVIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  + +Q Q GGNL+E LA L++++R R  +  +V 
Sbjct: 196 YGRGVGEALKDMAERLDMQDLRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVN 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + +++ P            + + ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPVFCLVFILVKDPNYYDTVLDHPWFIPACFFVGIMLTLNLIVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 ILTNIKV 322


>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 325

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 93/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +R  K     P A D+I R++RAG  +  A+ +   +   P+ +E   V    + G
Sbjct: 141 HRRTRRLLKLEAQLPEATDLISRALRAGHSLPAALEMAGTELPAPIGAELAIVFSQINFG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+S++ + +   +P+ ++ +    I +Q + GGNL+E L N+ +++R R  +  KV+ L
Sbjct: 201 VSMSDAFAGLTDRVPVDDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVL 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E +   WI+  LP  +   +Y  +P  M+ L     G  LL  A     +G++ +R +
Sbjct: 261 SAEGRLGGWILTLLPPVMGLAIYLLNPELMSTLWTTDAGIRLLWFAITMTCLGMLWIRQI 320

Query: 183 INFDV 187
           +   +
Sbjct: 321 VRIHI 325


>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 660

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R   F D  P+AL ++  S+R+G  V+ +V  + G    P+  E  R +    
Sbjct: 474 LRGRAERRLTAFADQLPDALQLVAGSLRSGFSVAQSVERLAGLELQPMGQEMARAVAQTR 533

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  +++  +   M  +++ +    I +Q ++GGNLSE +   +  +R+R  ++ +++
Sbjct: 534 LGVSTEDALRSVADRMNCRDLHWVVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIR 593

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA+++ +LP     L+  + P YM  L   P G  ++ +A   + +G + + 
Sbjct: 594 ALSAEGRLSAYVLIALPVITGGLLTVSRPDYMRPLYTTPMGIGMICLAVFLVALGWLWLS 653

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 654 KVVKVEV 660


>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
 gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
          Length = 321

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I KR  +    FP ALDI+ R ++AG   SD++ ++  +    +  EF+ +    +
Sbjct: 135 LNRNINKRMERIEQQFPEALDILKRGLQAGYAFSDSIKLVYEELEGELSDEFKLMFNRIN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  +  ++   V+ +P      F + +S+  + GGNL+E + NLSRI+R R   K +V+
Sbjct: 195 FGNDVHTALLSFVKRVPSTSAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + S W++   PF +  ++Y +SP Y ++LIN P G  LL      ML+GI  + 
Sbjct: 255 TLSAEGRLSGWVLVLTPFVLFAVLYISSPDYASILINTPEGLNLLKWGGIGMLLGIWWIS 314

Query: 181 LMINFDV 187
            +I  +V
Sbjct: 315 KLIKIEV 321


>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 320

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 99/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR     +  P+A++++VRS+R G P + A++++  +  DP+ SEF  + +    G  
Sbjct: 138 AKKRMDMIEEQLPDAVELMVRSLRVGHPFTSAISIVSKEIQDPLASEFGVIADETAYGRD 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+A++ 
Sbjct: 198 IGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITA 257

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P     ++    P Y + ++  P           F+ + ++VMR + +
Sbjct: 258 EAKWSGKFLSAFPILALIVIKLGDPHYYDEVMTHPLFIPGCIAVVLFLSLNLIVMRKLTD 317

Query: 185 FDV 187
             V
Sbjct: 318 IKV 320


>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
 gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
          Length = 323

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 117/187 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKRT  F   F + ++++VR +R+GLPV++ +AV+  +   PV  EF+ ++E   
Sbjct: 137 VSFFIKKRTNDFNAKFADGIELLVRGLRSGLPVTETLAVVAQEVPGPVGLEFKGIVERIK 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +S+      + + E +FF+  +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 197 IGKTMEDSLQETADRLGIPEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+I+GSLPF V  L+Y  +P Y+     + R  +       +M IGI +M 
Sbjct: 257 AMSSESKASAYIVGSLPFIVFGLIYSVNPSYIGGFFVEERLMVTGLGGLVWMSIGIFIMA 316

Query: 181 LMINFDV 187
            M++F++
Sbjct: 317 KMVSFEI 323


>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
 gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
          Length = 321

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 105/183 (57%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR +   +  P+A++++VRS+R G P S A++V+  +  DP+ +EF  + +    G  
Sbjct: 139 ARKRLSLIEEQLPDAVELMVRSLRVGHPFSSAISVVSCEIKDPLATEFGIIADESTYGRD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ES+  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 199 IGESLKHMAERLDMQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ S   +   P  V  ++  T P Y + +++ P       + A F+ + ++VMR+++N
Sbjct: 259 EAQWSGKFLSGFPVAVLLIIQLTDPHYYDEVLDHPWFIPACFIVAIFLALNLIVMRMLVN 318

Query: 185 FDV 187
             V
Sbjct: 319 IKV 321


>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 106/185 (57%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + K+R  +F    P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    
Sbjct: 136 RFMRKRRLKRFGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTY 195

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++ +   +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A
Sbjct: 196 GSDLVSALNSLFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRA 255

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +S E + SA+I+ ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  
Sbjct: 256 ISTEGRLSAYILTAIPALLFAGIMAMMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFK 315

Query: 182 MINFD 186
           M NF 
Sbjct: 316 MSNFR 320


>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 322

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 101/181 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R     +  P AL+II   +RAG     A+AV+  +   P+  EF RV+    LG S+ 
Sbjct: 142 RRMQALNNQLPEALNIISSGLRAGYSFPQAMAVVGREMDAPIADEFNRVLRDNRLGKSMD 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M      +++    T + +Q Q+GGN++E L  +   +R+R  +K +++AL+ + 
Sbjct: 202 DALLEMTARTDNEDLDLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQ 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SA II  LP  V+ L+   +P YM  L+ +P G M+L +A    ++GIM++R ++  +
Sbjct: 262 RMSAVIIVLLPIAVALLLLVINPEYMLTLVTEPIGIMVLSIAVIMQIVGIMIIRRIVQIE 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 322

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVANEVEDPLATEFGVIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    PGY + +I+ P       V  A + + + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 322

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I  R  KF +  P ALDII R ++AG P++     +  + S P+  EF       +
Sbjct: 136 IQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGFGEVGREVSAPLGPEFMNTFNLLN 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I +M    P   +  FS+ + +Q + GGNL E +  LS ILR R  +  K++
Sbjct: 196 YGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKLARKIK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +S E++ SAW++   PF +  ++    P Y+ +L   P G  ++      + IG + +R
Sbjct: 256 TISAESRMSAWVLVLAPFGLYVIISLVRPEYIELLHTHPMGIKMVIGGMVALFIGTLWIR 315

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 316 KIVNIEV 322


>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 320

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H   KR +   +  P+A++++VRS+R G P S+A++++  +  DP+ SEF  + +   
Sbjct: 134 VSHKAGKRMSMIEEQLPDAVELMVRSLRVGHPFSNAISIVSKEIQDPLASEFGVIADEAA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 194 YGRDLGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P     ++    P Y + + + P       +   F+++ + VMR
Sbjct: 254 AITAEAKWSGKFLSGFPLAALVVINLGDPHYYDEVRDHPYFIPACFIVGMFLVLNLFVMR 313

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 314 ILTNIKV 320


>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 282

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L N+P G   L V      +G + + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFNEPVGWATLAVIGVMEFLGYVWIT 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 284

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 98/185 (52%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  K     P+ L ++  S+RAGL  + A+  +   +  P+  EF  V+  Q +G
Sbjct: 100 WLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLARDTDPPLAQEFALVLREQRMG 159

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L +++      +P+Q+V+ F + +++  ++GGNL+E+L +L+  LR R  M+ KV++L
Sbjct: 160 VKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRRLIMEGKVKSL 219

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++  +P  + T +    P  M+ L + P G  ++ VA     +G  +   +
Sbjct: 220 TAQGRLQGIVMALMPVGLLTFLTLAYPDTMHDLYHTPLGWGIIAVAVVMEYLGYRMSLKI 279

Query: 183 INFDV 187
           +  D+
Sbjct: 280 VTIDI 284


>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 317

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 105/184 (57%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R  KF    P ALD+  RS+ AG P+  A++++  +  DP+ +EF  + +    G
Sbjct: 133 RARARRMRKFELKLPEALDVANRSLAAGHPLPAAISLVAREMPDPIGTEFGLLSDELTYG 192

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++  +   + +++++  +  +SVQ+  GGNL E L NLS+ LRDR  +KAKV+A+
Sbjct: 193 VTLDDALVNLADRVGVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAI 252

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + +A  +   PF +  ++   SP Y + +     G +++ V  A M IG +++  M
Sbjct: 253 SSEGRITAIFMSMYPFLLYAMIKALSPTYFDPVWESGHGAVVVTVLLAVMAIGNVILYKM 312

Query: 183 INFD 186
           +NF+
Sbjct: 313 VNFE 316


>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
 gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
          Length = 322

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR +   +  P+A++++VRS+R G P + AV ++  +  DP+ +EF  + +   
Sbjct: 136 VNKKAAKRMSMIEEQLPDAVELMVRSLRVGHPFASAVQIVANEVEDPLATEFGIIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKEMAERLDMQDMRFLAVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   +   P      +    PGY + +I+ P       V  A + + + VMR
Sbjct: 256 AITAEAQWSGKFLSGFPLFCLGGILAKDPGYYDSVIDHPWFIPACFVVGAMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 324

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 112/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+R A+F+  FP+A++++VR +RAGLP+++ +  +  +   PV SEF+ V +   
Sbjct: 138 LNILAKRRIAQFITRFPDAIELLVRGLRAGLPIAETMGAVASEIEGPVGSEFQAVSDRMR 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L  ++      +   E  FF   +++Q + GGNL+E L NL+ +LR R  MK K+ 
Sbjct: 198 IGRTLEGALQETADRLGTAEFQFFVITLAIQRETGGNLAETLGNLADVLRKRMQMKLKIS 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E+KASA+IIG LPF V  L+ F SP YM     D R  +       +M IG  +MR
Sbjct: 258 AMSSESKASAYIIGVLPFVVFGLISFISPTYMAGFFADQRLMIAGAGGLIWMSIGAYIMR 317

Query: 181 LMINFDV 187
            MINF++
Sbjct: 318 QMINFEI 324


>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 323

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  KF    P+AL+++ R++R+G  +S  ++V+V +   P+ +EF    E Q+
Sbjct: 137 LLFRRNRRFKKFGQQLPDALELVGRALRSGHSLSSGLSVVVQEMPPPISTEFALAYEEQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++  M+  MP  ++ FF T + +Q Q GG+L+E L  +  I+R R  +  +VQ
Sbjct: 197 LGIPIGEALKNMLTRMPNLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQ 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + S  ++ +LP  +   VY+ +P Y+ +L  D  G  ++       ++G + ++
Sbjct: 257 ALTGEGRISGVVLMALPIALFFAVYYLNPDYVMLLFTDELGRKMIAGGIVLQVLGALWIK 316

Query: 181 LMINFDV 187
            ++N  +
Sbjct: 317 KIVNIKI 323


>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 623

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 104/186 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 437 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 496

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 497 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 556

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 557 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 616

Query: 181 LMINFD 186
            +++  
Sbjct: 617 KVVSVK 622


>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 322

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVAECIRAFAERMDSQDLRFLAVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P     ++    P Y + +   P       V  AF++  ++ M+
Sbjct: 256 AITAEAKWSGTFLSAFPIVALVMISVLKPDYYDGVKETPLFIPAALVVGAFLVANVIFMK 315

Query: 181 LMINFDV 187
           +M+N  V
Sbjct: 316 IMVNIKV 322


>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 622

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 104/186 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R A F D   ++L ++  ++RAG  +  A+  +  ++  P   EF R++    
Sbjct: 436 LRVMAGRRRAAFADQLDDSLQLLASNLRAGHSMLRALDSLSREAEVPTSEEFARIVNETR 495

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L+ES+  + R M   + ++ +  I++  ++GG+L+E L  +   +R+R  ++ +V+
Sbjct: 496 VGRDLNESLDDVARRMRSDDFNWIAQAIAINREVGGDLAEVLDQVGNTIRERNQIRRQVK 555

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+++ +LPF ++  +  ++P Y++ L     G++++ V    + +G + M 
Sbjct: 556 ALAAEGKLSAYVLMALPFGLTAFLLVSNPDYLSKLTGSAIGYVMIAVGLVMLTVGGLWMN 615

Query: 181 LMINFD 186
            +++  
Sbjct: 616 KVVSVK 621


>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 331

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 1/188 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++ KKR   F    P AL++  R++RAG  +   + ++  + + P+  EF RV E Q+
Sbjct: 144 LNYMKKKRINDFTAAMPEALELTGRALRAGHGLGSGLKMVADEMTGPIAEEFGRVFEEQN 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++  M   +P  +V FF T + +Q Q GG+L E L  +S ++R R  +K +V 
Sbjct: 204 LGIPMEEALRAMANRIPTMDVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVA 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP-RGHMLLGVAAAFMLIGIMVM 179
           AL+ E + S  ++ ++P  +   ++ T+  Y+  L  DP  G  +L  AA   ++G + +
Sbjct: 264 ALTGEGRLSGAVLLAMPPLLLLYLFMTNRPYVMPLFTDPELGQPMLIGAAVLQILGALAI 323

Query: 180 RLMINFDV 187
           R +++  V
Sbjct: 324 RKIVDIKV 331


>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 316

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 105/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR   F +  P+A+ ++ RS+RAG  ++ AV +I  +  +P+   F+   E Q 
Sbjct: 130 LNYHRKKRRRLFAEQLPDAMVMMARSLRAGHSLAAAVELIGLELPEPIGGLFKLAYEQQK 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +++S+  +   +  Q+ +FF TV  + S+ GGNLSE L  L+  LR R  ++ +V+
Sbjct: 190 LGVRIADSLISLRERVESQDFNFFLTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVE 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ E + S +++ +LP  +   +Y   PGY++V        ++LG A    ++G  ++R
Sbjct: 250 VITAEGRISGYVLVALPVVMFAGLYLLRPGYLDVFFTQRLCQLILGAAVLGQVVGFFIIR 309

Query: 181 LMINFDV 187
            ++N  +
Sbjct: 310 KIVNISI 316


>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 367

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R   F    P+AL ++  ++++G     A  V+  +   P+  EF  +++   
Sbjct: 181 LARRYQQRLRAFDGQLPDALTLMANALKSGYSFLQAADVVAREMPPPIADEFAWLVKETR 240

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + + L ++++ ++  +P  ++    T + +Q Q+GGNL+  L   +  +R+R  ++ +++
Sbjct: 241 VNIPLEDALANLLDRVPSADLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIR 300

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S WI+G+LP  +  L+   +P Y+  L+  P G  LLG        G++V+R
Sbjct: 301 TLTAQGRLSGWIVGALPVALLVLLSAMNPAYLQPLLATPLGWTLLGAGVVMEAAGVLVIR 360

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 361 ALIRVDV 367


>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 322

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  KKR +   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +   
Sbjct: 136 ISHKAKKRMSMLEEQLPDAVELMVRSLRVGHPFSSAVQIVAKEVQDPLASEMGVIADESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKAMAERLDNQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + S P      +    P Y + +++         + AAF+ + ++VMR
Sbjct: 256 AITAEAQWSGKFLSSFPLMALVAIQLGDPNYYDPVLDHEWFIPACFLVAAFLGVNLIVMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 ILVNIKV 322


>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 323

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR A   + FP +LD + RS+RAG   S ++ ++  + +DP+  EFR +   Q+
Sbjct: 137 VRQKRSKRLATLEEQFPESLDFLARSMRAGHAFSISLEMLGEELADPLGQEFRALFNEQN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  ++      +PL +V FF++ + +Q Q GGNLSE LA L+ ++R+R  +K +V+
Sbjct: 197 LGAPLDTALRNFTTRVPLLDVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S   + +A I+  LP      +   +PGY+  + +D  G  L+G A    ++G   ++
Sbjct: 257 AASAHGRLTATILTLLPVGTMLALLVVAPGYLQGMADDSDGKYLIGGAIVAQVLGNYFIK 316

Query: 181 LMINFDV 187
            +IN  V
Sbjct: 317 RIINIKV 323


>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 282

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LKRMRKKRIEALEKQLPDALLMMSGALRAGASFPAALEAVVYETAPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ ++   +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDLDIAMRNVEKRIPIPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F     M  L ++P G   L V      +G   + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEAKAMAPLFSEPVGWATLAVIGVMECLGYFWIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 RITNIDV 282


>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 332

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 101/191 (52%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R   F +   + + ++  ++R G      + ++  ++ DP  +EFRRV++   
Sbjct: 142 VKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVAREAPDPASTEFRRVVQEVG 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  E++  ++R +P  ++    T +S+Q ++GGNL++ L  +   +R+R  +K ++ 
Sbjct: 202 LGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNLAQVLDTIGHTIRERVRIKGEIS 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176
            L+ + + S+WII  LP  ++  +   +P YM  L      P+    + V + FM+ +G 
Sbjct: 262 TLTAQGRISSWIITGLPIGLAAFITVVNPDYMAPLFTFGLPPQAWCCMPVTSLFMIALGY 321

Query: 177 MVMRLMINFDV 187
             ++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332


>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 322

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 97/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR A   +  P+A++++VRS+R G P + A++++  + +DP+ +EF  + +    G  
Sbjct: 140 ANKRMAMLEEQLPDAIELMVRSLRVGHPFTSAISIVASEMADPLATEFGIIADEAAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 200 IGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   +   P      +    P Y +  +  P       +   F++  + VMR ++N
Sbjct: 260 EAKWSGKFLSGFPVLALIGIQIIDPNYYDKAMLHPYFIPACLIVGTFLVANLFVMRALVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 652

 Score =  174 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 96/172 (55%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P +L ++  S+R+G  +  A+  I   + DP+  EF R +    +G  +++++ RM   
Sbjct: 481 LPQSLMLVSTSLRSGFGLPQALDSIAKDAPDPLAKEFSRGLAETRIGTDIADALERMADR 540

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           M  + +      I +Q ++GGNL+E L   +R LR+R+++  +V+ALS E + SA+I+ +
Sbjct: 541 MGSRSMRMAVMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSAYILIA 600

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           LP  +   + + + GY+++L   P G M+L      ++ GI  MR ++  +V
Sbjct: 601 LPIGLFFYMMWVNYGYISLLWTHPLGLMMLVGGIVLLIGGIFWMRQVVKIEV 652


>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 282

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 95/186 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    L
Sbjct: 97  KRMHKKRVEAIEKQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRL 156

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++A
Sbjct: 157 GIDLDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  
Sbjct: 217 LTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTKPVGWATLAVIGVMELLGYFSISK 276

Query: 182 MINFDV 187
           + + DV
Sbjct: 277 ITHIDV 282


>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 332

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LIK R  KF   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   
Sbjct: 138 VSRLIKGRVLKFNAKFPDALELLTRGLRSGLPIAETLNVVSNEVPGPVGEEFKLITERIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 198 IGKTMDQALQETADRLGTPEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172
           A+S E+KASA+IIG LPF V  L+ + +  YM+     DP G        ++      +M
Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPAGLFGLSTMQVIGIGGMCWM 317

Query: 173 LIGIMVMRLMINFDV 187
            IG  +M  MINF++
Sbjct: 318 SIGAFIMAQMINFEI 332


>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 310

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 111/183 (60%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR A+F   FP+A+D++VR +R+GLPV++   V+  +   PV  EF+ V+E   +G +
Sbjct: 128 IKKRVAQFNARFPDAIDLLVRGLRSGLPVTETFQVVSQELPGPVGEEFKGVVERIRIGNT 187

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++      +   E  FF   I +Q + GGNL+E LANLS +LR R  MK K++A+S 
Sbjct: 188 MEAALQETAEMLGTPEFQFFCITIQIQRETGGNLAETLANLSDVLRKRAQMKLKIRAMSS 247

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAKASA+I+G+LPF V  +V+  +P Y+     + R  +       +M IG  +M  M+N
Sbjct: 248 EAKASAYIVGALPFFVFGVVWTVNPSYLAGFFVEQRLIVAGIGGLIWMSIGAGIMAKMVN 307

Query: 185 FDV 187
           F++
Sbjct: 308 FEI 310


>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
           2.4.1]
 gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 322

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 97/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  
Sbjct: 140 AKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 200 VAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P      +    P Y + +   P       V  AF++  ++ M++M+N
Sbjct: 260 EAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 322

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +   
Sbjct: 136 VNRKAGKRMALIEEQLPDAVELMVRSLRVGHPFNSTVQIVAHEIEDPLATEFGIIADECA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDIGEALKEMAERLDIQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P           P Y + +++ P            + + + VMR
Sbjct: 256 AITAEAQWSGKFLSAFPLLALIGTLLKDPNYYDDVMDHPYFIPACFFVGIMLTVNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 VLTNIKV 322


>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
          Length = 325

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR      DFP+ LD+I R+++AG   +DA+ +   +   P+  EF+ +    +
Sbjct: 139 LNRDTNKRMDTIEADFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   ++ +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YTKDIKRALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     GH LL   A  M IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEAGHKLLMWGAVGMTIGGWWIS 318

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 319 RIIKIDV 325


>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 332

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI KR  +F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   
Sbjct: 138 VSRLINKRVQQFTAKFPDALELLTRGLRSGLPIAETLGVVSSEVPGPVGEEFKLITERIK 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G ++ +++      +   E  FF   +++Q + GGNL+E L+NL+ +LR R  MK K++
Sbjct: 198 IGKTMDQALQETADRLGTAEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFM 172
           A+S E+KASA+IIG LPF V  L+ + +  YM+     DP G        ++      +M
Sbjct: 258 AMSSESKASAYIIGVLPFTVFGLICYINYDYMSPFFTPDPVGLFGLSTMQVVGIGGMCWM 317

Query: 173 LIGIMVMRLMINFDV 187
            IG  +M  MINF++
Sbjct: 318 GIGAFIMAQMINFEI 332


>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 322

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 88/187 (47%), Positives = 141/187 (75%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R A+F+ + PNA+D+IVR +++GLPV D + +I  ++ +PVR+EFR ++E+Q 
Sbjct: 136 LGYLRKRRIARFVLELPNAMDVIVRGIKSGLPVGDCLRIIAREAPEPVRTEFRALVESQA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+SLSE+ +++   MP+ E +FF+ VI +Q++ GGNLSEAL NLSR+LRDR+ M  KV 
Sbjct: 196 VGVSLSEAATKLFERMPVSEANFFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVS 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+SMEA+ASA II SLPF V+ L YF+SP Y+++L     G + + ++  +M++G++VM+
Sbjct: 256 AMSMEARASAAIIASLPFVVAVLCYFSSPDYISLLWTTQVGQIAITLSGLWMVVGVLVMK 315

Query: 181 LMINFDV 187
            MI F++
Sbjct: 316 RMITFEI 322


>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 322

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A F +  P+A++++VRS+R G P S A+ ++  +  DP+ SE   + +    G  
Sbjct: 140 AKKRMAMFEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGSEIGIIADESAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +S+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 200 IGDSLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   +   P     ++    P Y + +           V   F++    VM+ + N
Sbjct: 260 EAKWSGTFLSGFPILAIVMINVIQPNYYDDVKETGFFIPAALVCLGFLIANYFVMKALTN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 320

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 104/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K R   F  +    + II  S++AG     A+AV+  ++SDP   EF+++++   
Sbjct: 134 IRKRKKDRIKHFDSELNEGITIISNSLKAGYSFLQAIAVVSEETSDPFSKEFKKLLKEMS 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  +++  ++  +  +++     VI +Q  +GGNLSE L N+S  +R+R+ +K++++
Sbjct: 194 LGISEEDALKNLLSRVESEDLRLIVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+  +P  +   +Y  +  Y+ +L     G +++  A     +G++++R
Sbjct: 254 TLTAQGRLSGIILMLIPIFLGVTIYLFNKEYILLLFTTSIGLIMVAAAVLSEFLGLLIIR 313

Query: 181 LMINFDV 187
            +IN D+
Sbjct: 314 KIINIDM 320


>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 279

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 104/185 (56%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R AK ++  P+AL+++  S+R+G  ++ A+ ++  ++  P   E   V+  Q LG
Sbjct: 95  YLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVATETPPPFSQELSLVLREQKLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL ++     + + L++V+   + I++   +GGNLSE L  L+  LR +  M+ K++AL
Sbjct: 155 VSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNLSEVLERLASTLRAKAAMEGKIRAL 214

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++G LP  +  +++   P  M  L +   G  ++ V A  +++G + ++ +
Sbjct: 215 TSQGKLQGIVVGLLPVFLGFVLFQMEPEAMAPLFSTYYGWAVMAVVAVLLIMGGVFIKKI 274

Query: 183 INFDV 187
           +  DV
Sbjct: 275 VTIDV 279


>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 310

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 96/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A+F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 LGFLAGKRRARFDQQLGDTLQLLAGGLRAGHSILRAIDAAAAESQSPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  S++     M  ++  + +  I +  ++GGNL+E L  ++  +R+R  +K  ++
Sbjct: 184 LGRDLLASLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++P  +  ++   +PGYM+ +   P G  ++  +  FM IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPIGIVLMLMAVNPGYMDAMFTHPLGWAMIAASVVFMTIGSLWMR 303

Query: 181 LMINFD 186
            +I+  
Sbjct: 304 KIIDLK 309


>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
 gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
          Length = 332

 Score =  173 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 112/193 (58%), Gaps = 8/193 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LI KR ++F   FP+AL+++ R +R+GLP+++ + V+  +   PV  EF+ + E   +G
Sbjct: 140 RLITKRVSQFNAKFPDALELLTRGLRSGLPIAETLGVVSNEIPGPVGEEFKLITERIKIG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            ++ +++      +   E  FF   +S+Q + GGNL+E L+NL+ +LR R  MK K++A+
Sbjct: 200 RTMEQALQETADRLGTAEFQFFVITLSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAM 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRG-------HMLLGVAAAFMLI 174
           S E+KASA+IIG LPF V  ++ + +  YM      DP G        ++      +M I
Sbjct: 260 SSESKASAYIIGVLPFLVFGMICYINFDYMKPFFTPDPVGIFGLSTMQVIGIGGMCWMGI 319

Query: 175 GIMVMRLMINFDV 187
           G  +M  MINF++
Sbjct: 320 GAFIMAQMINFEI 332


>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 322

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 97/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +    G  
Sbjct: 140 AKKRMALIEEQLPDAVELMVRSLRVGHPFSSAIQIVAKEVPDPLGTEFGVIADEAAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++E I      M  Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 200 VAECIRAFAERMESQDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P      +    P Y + +   P       V  AF++  ++ M++M+N
Sbjct: 260 EAKWSGTFLSAFPIVALVAISILKPDYYDGVKETPLFIPAALVVGAFLIANVIFMKIMVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 310

 Score =  173 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 95/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    
Sbjct: 124 LGFLAGKRRAAFDSQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++     M  ++  + S  I +  ++GGNL++ L      +R+R  +K  ++
Sbjct: 184 LGRDLLAALNDTAERMQNEDFVWISQAIQINREVGGNLADVLDQTGETIRERSEIKGHIK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E K SA+I+ ++PF +  ++   SP YMN + + P G  ++GV+   M IG + MR
Sbjct: 244 ALAAEGKFSAYILIAMPFGIVAMLVAMSPTYMNSMFSHPLGWAMIGVSFVLMTIGALWMR 303

Query: 181 LMINFD 186
            +I+  
Sbjct: 304 KIIDLK 309


>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 310

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 93/184 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR A F     + L ++   +RAG  +  A+     +S  P   E RRVI    LG
Sbjct: 126 FLAGKRRAAFDGQLGDTLQLLSGGLRAGHSILRAIDAAAAESQKPTSEEMRRVITETSLG 185

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  +++     M  ++  + S  I +  ++GGNL++ L  ++  +R+R  +K  ++AL
Sbjct: 186 RDLLAALNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKAL 245

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E K SA+I+ ++PF +  ++   SP YMN +   P G  ++  +   M +G + MR +
Sbjct: 246 AAEGKFSAYILIAMPFGIVAMLLAVSPTYMNSMFTHPLGWAMIVASFVLMTVGALWMRKI 305

Query: 183 INFD 186
           I+  
Sbjct: 306 IDLK 309


>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
 gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
          Length = 317

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 100/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R   F + FP+ALD++  +++AG  +  ++ ++  +   P+  EF  V+E  + G S
Sbjct: 135 RRQRRINFEEHFPDALDLMGYAMKAGHSIMASLKMVSEEMPAPINEEFAIVVEEINFGKS 194

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++    + +   E+ +F T + VQ + GGNL E L  +S I+R +   + +V+ALS 
Sbjct: 195 IDSTLRNFAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSA 254

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E K SA I+ +LPFC++  V   +  Y+ +LI DP G  L+  A   M  G  ++   + 
Sbjct: 255 EGKLSAIILVALPFCIALAVSVLNKEYVAILITDPIGPYLITGAVIMMSFGSFIIYKFVQ 314

Query: 185 FDV 187
            D+
Sbjct: 315 LDM 317


>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 324

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 100/176 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR  +F    P ALD++ R+++AG      + ++  +   P+  EF + ++  +
Sbjct: 138 LQGKKRKRMDRFQKQLPEALDLMARALKAGHTFGGGMRMVADEFDGPIGPEFGKTLDEIN 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +   +   ++ FF   +++Q + GGNL+E +A ++ ++R+R  +  K++
Sbjct: 198 YGMDVDRALSNLQSRVDCPDLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIR 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            LS E + SA+I+ +LPF ++ ++Y  +  Y+++L     G  ++  AA  M+IG 
Sbjct: 258 VLSAEGRVSAYILIALPFLLTGILYVVNSDYISLLWTRELGQNMVWGAAISMIIGA 313


>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 96/180 (53%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AK  +  P+A++++VRS+R G P +  V ++  +  DP+ +EF  + +    G  + E
Sbjct: 143 RMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIEDPLATEFGIIADESAYGRDIGE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  M   + +Q++ F S  +++Q Q GGNL+E LA L+ ++R R  +  KV+A++ EAK
Sbjct: 203 ALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFRKVKAITAEAK 262

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            S   + + P      +    P Y + +++ P            + + ++VMR++ +  V
Sbjct: 263 WSGKFLSAFPLLALIAILVKDPNYYDSVMDHPYFIPACFAVGIMLAVNLLVMRILTDIKV 322


>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
 gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
           mirabilis ATCC 51599]
          Length = 291

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL  +R   F    P+A+ +I  +VRAG  ++ A+  +  +   P   EF  ++    
Sbjct: 105 IRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLALRQMASELPAPGGQEFELMLRELR 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG++L +++  + R M   ++  F   + + ++ GGNL+E L  L+  +R +  ++ K+ 
Sbjct: 165 LGVTLDDALLNLERRMGCDDLRLFGAAVRIANESGGNLAETLERLADTIRKKMALEDKIM 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +   W++  LP  V   ++   P  M  L++  +G ++  V A   ++G++ +R
Sbjct: 225 ALTAQGRMQGWVMVLLPLGVGAALFAIEPTAMAPLLHSWQGWIVCSVVAVLEIVGLLFIR 284

Query: 181 LMINFDV 187
            ++  D+
Sbjct: 285 RIMAIDI 291


>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 336

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 107/184 (58%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             K+R +      P A+D++  ++ AG  ++ A+ +   + S+P+  E  +V+  Q LGL
Sbjct: 153 RRKRRLSALERQLPGAIDVLAGALEAGSSLAQAMMLAAREMSNPISDELIKVVRDQELGL 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E++ RM+   P +++    T I++Q ++GG+L+  L ++S  +R+R  +K +++ L+
Sbjct: 213 SQEEALRRMLERCPSEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLT 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + SA+I+ ++PF ++ +++  +  Y+  L     G ++L VA A +++G  +MR +I
Sbjct: 273 AQGRISAYIVTAIPFLLTAVIFLLNRSYIMPLFTTNMGRIMLAVALAGIMMGYYMMRRII 332

Query: 184 NFDV 187
              V
Sbjct: 333 AIKV 336


>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 281

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +KH  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   
Sbjct: 95  VKHYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREAMPPLSQEFGLFVKEVK 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M R +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ 
Sbjct: 155 LGVPLEEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKID 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K   WI+ ++P  +  ++ +  P  M  +++   G +L+ + A   ++GI+++R
Sbjct: 215 ALTSQGKLQGWIVAAMPGVLGMVLNYMRPDLMEPMMDHIFGWILVIIIAIMEVMGILIIR 274

Query: 181 LMINFDV 187
            ++N D+
Sbjct: 275 RIVNIDI 281


>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 322

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P + AVA++  +  DP+ SE   + +   
Sbjct: 136 VNNKAKKRLALIEEQLPDAVELMVRSLRVGHPFTSAVAIVAKEVPDPLGSEMGVISDEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDVGEALKAMAERLEMQDMRFLAVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P     ++    P Y + +           V A F++  + VMR
Sbjct: 256 AITAEAKWSGMFLSLFPLGALVMINVIQPNYYDAVSETSVFIPACLVVAGFLVANMFVMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 MLVNIKV 322


>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 326

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/181 (45%), Positives = 124/181 (68%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  KF  +F NA+D+IVR +++GLPV D   +I  +S  PV  EF+ ++E   +GL+L
Sbjct: 145 KRRLKKFSLEFANAVDVIVRGIKSGLPVHDCFKIIARESPAPVGPEFQTLVEGLGVGLTL 204

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++ +M   +P  E+ FF+ VI++Q + GGNL EAL+NL+ +LR R+ M  K++ALS E
Sbjct: 205 GQALEKMYERIPTPELRFFTIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSE 264

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ASA IIGSLP  V TLV  T+P YM ++  D RG ++L  +A +M +GI++M+ MI+F
Sbjct: 265 ATASAGIIGSLPPVVMTLVGLTTPAYMGLMFTDFRGQVMLLGSAIWMGMGILMMKKMISF 324

Query: 186 D 186
            
Sbjct: 325 K 325


>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 283

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 100/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L K+R  KF+   P+AL++I  S+++G  VS+A+  +  +   P++ EF+  +  Q L
Sbjct: 98  QFLHKRRRRKFVHQLPDALNMIASSMQSGANVSNAIEFMAEEMEAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P +E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMFKRIPEEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTLLPVFIGVVLYHMEPSAMGRILTEPMGWALIALVIIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 321

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 106/178 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  KF + FP+AL +I RS+RAG   + A+ ++  + +DPV   F+   E Q 
Sbjct: 135 LHFKIRQRLEKFTELFPDALTMIARSLRAGHSFNSAIQLVGEEIADPVGELFKTAYEQQL 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL ++E+++ +   +   ++ FF+T I++ + +GGNLSE L NL++ +R+R  ++ +V+
Sbjct: 195 LGLRITETLTNLNERIESLDLRFFTTAIAINNDVGGNLSEILENLAKTIRERLKIRRQVR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + + + + +++G+LP     +    +P Y +VL  + +G  +L  A    ++G+ V
Sbjct: 255 VYTAQGRMTGYVLGALPVFTFLIFNVLNPKYESVLYKETKGLYVLAFAVVLQVVGLFV 312


>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 322

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P++++++VRS+R G P+  A+ ++  +S DP+ +EF  + +   
Sbjct: 136 VNQKAKKRLSLIEEQLPDSVELMVRSLRVGHPLVSAIQIVAKESEDPIATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F S  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGREVGEALKEMAERLDMQDLRFLSVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EA+ S   + + P      +    P Y + +++         V    + + + VMR
Sbjct: 256 AITAEAQWSGKFLSAFPLGALLFILVKDPNYYDGVMDHELFIPACFVVGVMLTMNLFVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 MLTNIKV 322


>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 323

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  KF +  P+ L+++V  +RAG     A+  +  +   P+  EFRRV++   LG+ + 
Sbjct: 137 KRLVKFNEQLPDMLNLMVNGLRAGYSTMQAMEAVSKELPPPICDEFRRVVQEMQLGVPMQ 196

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  ++R +P  ++    T I+VQ ++GGNL+E L  +S  +R+R  +K +++ L+ + 
Sbjct: 197 QALDNLLRRIPSDDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV 256

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI------NDPRGHMLLGVAAAFMLIGIMVMR 180
             S   +  +P  V  ++Y  +  YM          N P G++ L  AA  ++ G +VM 
Sbjct: 257 MYSGRFLAMMPIFVMGVLYLLNRPYMMEFFKPENNANLPCGYIALVCAAILIISGYVVMN 316

Query: 181 LMINFDV 187
            + + +V
Sbjct: 317 KIGDIEV 323


>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 321

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R   F     + L ++  S+RAG      + +I  +   P+ +EF  V+    
Sbjct: 135 LQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQPPMSTEFANVMRNTS 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++  M + +  ++ S   T + +Q Q+GGNL+  L  +   + +R  ++ +V 
Sbjct: 195 LGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISERIRLRREVG 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + K S  ++  +P  +      TSP Y+  L+    G M +G A    +IG +++ 
Sbjct: 255 TLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLTTSIGKMAIGAAVVMEIIGYLIIS 314

Query: 181 LMINFDV 187
            +++  +
Sbjct: 315 RIVDIKI 321


>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 282

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 94/185 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            + KKR        P+AL ++  ++RAG     A+  +V ++  P+  EF  ++    LG
Sbjct: 98  RMRKKRIEVIEQQLPDALLMMSGALRAGASFPTALEAVVHETPPPISQEFDLLMREIRLG 157

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++AL
Sbjct: 158 IDLDIAMRNVEKRIPVPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRAL 217

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +    ++  LP  +  ++ F  P  M  L   P G   L V     L+G   +  +
Sbjct: 218 TSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTQPVGWATLAVIGVMELLGYFSISKI 277

Query: 183 INFDV 187
            N DV
Sbjct: 278 TNIDV 282


>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 322

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR A   +  P+A++++VRS+R G P   ++ ++  +  DP+ +EF  + +   
Sbjct: 136 VNNKAKKRMALIEEQLPDAVELMVRSLRVGNPFVSSIQIVANEIEDPLATEFGIISDESA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +S+Q Q GGNL++ LA L++++R R  +  +V 
Sbjct: 196 YGRDVGEALKDMAERLDMQDLRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVN 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + ++++P            + + ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPVACLVFILVNDPNYYDTVLDEPYFIPACFFVGFMLTLNLIVMR 315

Query: 181 LMINFDV 187
           ++ N  V
Sbjct: 316 ILTNIKV 322


>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 322

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR +   +  P+A++++VRS+R G P S AVA++  +  DP+ +E   + +    G  
Sbjct: 140 AKKRISMIEEQLPDAVELMVRSLRVGHPFSSAVAIVAKEVPDPLGTEMGVISDEAAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ES+ +M   M +Q++ F +  +++Q+  GGNL+E L  LS+++R R  +  +V+A++ 
Sbjct: 200 MGESLKQMADRMDMQDMRFLAVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   +   P     ++    P Y + +           V AAF+++ ++VMR ++N
Sbjct: 260 EAKWSGMFLSVFPLGALVMINVLQPTYYDAVKETSVFIPACLVVAAFLVVNVIVMRRLVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IQV 322


>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 327

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IKKR     D   +A+ +I  S++AG     AV ++  + + P+  EF ++ +  +
Sbjct: 141 IKIKIKKRLRILNDQLNDAIVLISNSLKAGYSFFQAVDIVSKEMTGPMAEEFAQLQKEVN 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +  +++  +V  +   ++    T + +Q Q+GGNLSE L N+S  +R+R  +K +V+
Sbjct: 201 FGTTTEKALENLVTRVTSDDLELVVTAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II +LP  +  +++  +  ++ VL  DP G ++LG +    +IGI  + 
Sbjct: 261 TVTAQGRMSGMIIAALPPALGFILFLINKSHVMVLFTDPIGLIILGFSVFMEIIGIYFIS 320

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 321 RIVSIEV 327


>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 320

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 98/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR +   +  P+A++++VRS+R G P ++A+A++  +  DP+ SEF  + +    G  
Sbjct: 138 AKKRMSMIEEQLPDAVELMVRSLRVGHPFTNAIAIVSKEIQDPLASEFGIISDEAAYGRD 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V A++ 
Sbjct: 198 IGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITA 257

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P     ++    P Y + ++              F+   ++VMR + +
Sbjct: 258 EAKWSGKFLSAFPIVALIVIKLGDPHYYDEVMTHELFIPGCIAVILFLSANLLVMRKLTD 317

Query: 185 FDV 187
             V
Sbjct: 318 IKV 320


>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 282

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 98/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K + +KR     D  P+AL ++  ++RAG     A+  +V +S  P+  EF  ++    
Sbjct: 96  VKKMQRKRLMAIEDQMPDALLMMSSALRAGASFPMALESVVAESRPPISQEFDLLMREVR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++  M + +P+ +    +  I++  ++GGNL+E L +++R LR++  M+ K++
Sbjct: 156 LGVDLMDALRNMEKRIPVPDFLMVTAAITISREVGGNLAETLESVARTLREKHQMEGKIR 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K    ++  LP  +  ++    P  M  L + P G   L V A   L+G   + 
Sbjct: 216 ALTAQGKMQGLVMTGLPLFLIVVLNHMEPVAMAPLFSSPIGWGTLSVIAVMELLGYKAIS 275

Query: 181 LMINFDV 187
            + + DV
Sbjct: 276 KITHIDV 282


>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
 gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
           sediminis HAW-EB3]
          Length = 325

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR       FP+ALD++ R+++AG   SDA+ +   +   P+  EF+ +    +
Sbjct: 139 LSRDTNKRMDAIEASFPDALDVVRRALQAGYSFSDAIKLATEELEGPIAKEFKLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   +  +P      F++ + VQ + GGNL+E + +LSR++R+R   + +V+
Sbjct: 199 YTKDVKRALLGFIERVPSISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     G  LL   A  M IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYLQTPSYVGELTGTEGGKKLLMWGAIGMTIGGWWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KIIRIDM 325


>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 103/184 (55%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++RT  F++   + + ++  S+RAG  +   + ++  ++  P+  EFRRV+    LG+
Sbjct: 144 RARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVARETPPPMSEEFRRVVREVGLGI 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E++S ++R +P +++    T I+VQ ++GGNL++ L  +   +R+R  +K +++ L+
Sbjct: 204 PTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIRERVRIKGEIRVLT 263

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +   S +II +LP  ++ L+   +PGY+  ++  P    +       + +G + MR ++
Sbjct: 264 AQQSISGYIISALPVGLALLLMVINPGYVMGMMRWPW-ICMPIGGVVLIFLGFIAMRKIV 322

Query: 184 NFDV 187
           N +V
Sbjct: 323 NIEV 326


>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
 gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
           15444]
          Length = 316

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 103/187 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL   R  K     P+AL I+ RS+ AG PV+ AV+++  +  DP+ +EF    +   
Sbjct: 130 IRHLAGARAKKLAAQLPDALQIVCRSLEAGHPVATAVSLVAREMPDPIGTEFGMTADEVS 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL+ ++ RM       +V  F+  + +Q + GGNL+E L + +  +R+R+ M+ KV+
Sbjct: 190 YGMSLTNAVQRMAERAGDPDVELFAATVRLQEKTGGNLTELLKSNTNTIRERQTMRLKVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A S E + SA I+ S PF V T ++   P +   +I++P           +M IG +VM 
Sbjct: 250 AASSEGRVSAMILTSAPFIVMTAIHLLRPEFYGSVIHEPLIQYSFAGLLVWMGIGNLVMN 309

Query: 181 LMINFDV 187
            MINF +
Sbjct: 310 RMINFKM 316


>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
 gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
          Length = 305

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 113/184 (61%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+ +R  +FL  F  A+ +IVR +RAGLPV++ V V+  +   PV  EFRRV +   LG 
Sbjct: 122 LMGRRRGRFLKTFAEAIALIVRGLRAGLPVTETVGVVGREIEGPVGEEFRRVADEVRLGA 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++    R + L E  F +  ++VQ + GGNL+E+L NL  ILR R+ M+ K++A+S
Sbjct: 182 PIEGAMGEAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMS 241

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA ASA IIG LPF ++ L+   SP YM VL   P G +++    A + +G ++MR M+
Sbjct: 242 SEATASALIIGVLPFAMAVLMSIASPDYMRVLFTGPLGRLMIAAGLASLAVGGLIMRKMV 301

Query: 184 NFDV 187
            F++
Sbjct: 302 RFEI 305


>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 296

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L+ +R   +     +AL ++   +RAGL V  A+ ++V +   PV  EF  +++   
Sbjct: 110 INYLVDRRINAYSAQMVDALTLLSNGIRAGLSVPQAIGMVVDEMPAPVSQEFNMILQQNR 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E    + + +P ++   F + I++  + GGNL+E    +  ++R+R  +K K+ 
Sbjct: 170 IGVPLEECFDNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKID 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +       I  +P+ +  + + + P  +  +   P G +L   A AF   G  V+ 
Sbjct: 230 TFTAQGMFQGLTIFLMPYGIGLIYFVSDPESVKPMFTHPLGIILTLAALAFDFAGGFVIL 289

Query: 181 LMINFDV 187
            ++   V
Sbjct: 290 KIVKIKV 296


>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
          Length = 322

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 100/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKRTA+  +  P+A++++VRS+R G P S A++++  + SDP+ +EF  + +    G  
Sbjct: 140 AKKRTARLEEQLPDAIELMVRSLRVGHPFSAAISIVANEVSDPLATEFGIIADEAAYGRE 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E++  M   + +Q++ F +  +++Q Q GGNL+E L  LS+++R R  +  +V+A++ 
Sbjct: 200 LGEALKDMAERLDMQDLRFLAVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   +   P      +    P Y +  +              F+++ ++VMR ++N
Sbjct: 260 EAKWSGNFLSGFPLMALIGIQLIDPNYYDEAMEHAFFIPAAITVGVFLVLNLIVMRGLVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 290

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 106/186 (56%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + K+R  KF +  P+AL ++   +RAGL +S A+A +V +S  P+  EF  ++  Q L
Sbjct: 105 RQMRKRRLRKFEEQLPDALMMLSGGLRAGLGLSSAMAQLVAESGPPLSQEFSLMLREQRL 164

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G++L +++S +   MP Q     ++ + + ++ GG L+E L   S  +R R  M+AK+ A
Sbjct: 165 GVTLEQALSNLNHRMPTQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGA 224

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K  AW++G+LP  +  ++    P  M++L +   G   L V A F  +G+ V+R 
Sbjct: 225 LTAQGKLQAWVVGALPIALMLILNEMEPQAMSMLWHTRVGWATLAVIALFEFLGVYVIRK 284

Query: 182 MINFDV 187
           +I  DV
Sbjct: 285 IIAIDV 290


>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 320

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R+ KF + FP+AL I  RS+RAG     A+ ++  +   PV   F+   E Q 
Sbjct: 134 LRVKTERRSIKFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEVPSPVGPLFKTAYEQQQ 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL + +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + S +++ +LP     +    +P Y   LI +P G  +L  AAA  +IG +V+R
Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSVLNPNYERALIREPLGLYVLAGAAAMQIIGFLVIR 313

Query: 181 LMINFDV 187
            ++   +
Sbjct: 314 KIVRIRI 320


>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
           MSMB43]
          Length = 328

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 114/185 (61%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+A+D++VR+VRAG+PV  A+     +S +PVRS F  + +   +
Sbjct: 141 RMLIVRFRLRFLAVFPDAIDLMVRAVRAGIPVVHAIVTAGVESQEPVRSTFHTIGDGLRV 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + +    + + + SFF+  + +Q + GG+L+E L NLS I+R R++++ K +A
Sbjct: 201 GADLKEVLEQACERLQIADFSFFAVCLMLQRETGGSLTETLENLSGIIRARRDVRLKTKA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E K SA II ++PF +   +Y  +  Y+ +L +   GH +L +AA  + +G++++R 
Sbjct: 261 LTAEGKISAKIIAAVPFAIMGFLYLVNRPYIELLFDTGMGHTMLMLAAVLLTVGLLLIRK 320

Query: 182 MINFD 186
           + N D
Sbjct: 321 IANLD 325


>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 282

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + KKR        P+AL ++  ++RAG     A+  +V +++ P+  EF  ++    
Sbjct: 96  LARMRKKRIGTLEKQLPDALLMMSGALRAGASFPSALEAVVHETTPPISQEFDLLMREIR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +  ++  + + +P+ +    +  +++  ++GGNL+EAL +++R LR++  M+ K++
Sbjct: 156 LGIDMDIAMRNVEKRIPIPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIK 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++ F  P  M  L  +P G   L V      +G + + 
Sbjct: 216 ALTSQGRMQGIVMTCLPLFLMLVLRFMEPKAMAPLFTEPVGWATLAVIGVMEFLGYVSIS 275

Query: 181 LMINFDV 187
            + N DV
Sbjct: 276 KITNIDV 282


>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 327

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 103/189 (54%), Gaps = 4/189 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   LG
Sbjct: 139 YAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L   +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++  L
Sbjct: 199 LRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVL 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVA-AAFMLIGIMV 178
           + + + SA++I  LP  ++  +   +P YM+ + +    P     L VA    ++IG   
Sbjct: 259 TAQGRISAYVITGLPIGLAIFITVINPNYMSPMFSFGMPPEHWCCLPVAGIVMIVIGFFA 318

Query: 179 MRLMINFDV 187
           +  +++ +V
Sbjct: 319 IMKIVDIEV 327


>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 103/185 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            +  +R  KF +  P+A+D+  R++RAG  +   +  I  ++SDPV+ EF++++E   LG
Sbjct: 141 RVRGRRLHKFEEMLPDAIDLFTRTMRAGHNIHSGLETIATETSDPVKMEFKKLMEELALG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  ++  + + +PL ++ FF T + +Q Q G N+   L NLS ++R+R NM AK++A 
Sbjct: 201 SQVEPALHGLGKRVPLIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAH 260

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + SA ++  LP  V    +   P Y+ +L  DP G      A     +GI+V+R +
Sbjct: 261 TAQQRFSAGLLCCLPLVVGIGFWILKPEYVRLLWTDPVGSKFFTYAIISEFVGILVIRKI 320

Query: 183 INFDV 187
            N  V
Sbjct: 321 ANIKV 325


>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
           DSM 5159]
 gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
           [Thermomicrobium roseum DSM 5159]
          Length = 323

 Score =  170 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 102/185 (55%), Gaps = 1/185 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R  +F++   + + ++  S+RAG  +   + ++  +S+ P+  EFRRV+    LG
Sbjct: 140 WRGRHRLQRFVNQLGDTIGLMANSLRAGYSLLQTMDLVARESAPPMSEEFRRVVREVGLG 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L +++  ++  +P +++    T I++  ++GGNL++ L  +   +R+R  +K +++ L
Sbjct: 200 VPLQDALDHLLERIPSEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVL 259

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +   S +II  LP  ++ L++  +P Y+  L+  P    +   A   M++G +VMR +
Sbjct: 260 TAQQSLSGYIISLLPVGLAILIFLLNPSYLLSLLRWPW-ICMPIGAVICMVLGFVVMRRI 318

Query: 183 INFDV 187
           +  +V
Sbjct: 319 VAIEV 323


>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 325

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 99/191 (51%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR   F D   + + ++  ++R G      + ++   +  P+  EFRRV++   
Sbjct: 135 LNMRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVARDAPAPMSGEFRRVVQEVG 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  ++R MP +++    T +++Q ++GGNL++ L  +   +R+R  +K ++Q
Sbjct: 195 LGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNLAQILDTIGHTIRERVRIKGEIQ 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGV-AAAFMLIGI 176
            L+ + + S W+I  LP  ++  +   +P YM  + +    P+    L V + A + IG 
Sbjct: 255 TLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSFGMPPKHWCCLPVTSLAMIAIGY 314

Query: 177 MVMRLMINFDV 187
             +  +++ +V
Sbjct: 315 FAIMKIMDIEV 325


>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 327

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 102/189 (53%), Gaps = 4/189 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K+R  KF     + ++++  S+R+G  +  ++ ++  ++ +P  SE+RRV++   LG
Sbjct: 139 YAAKQRVTKFNAQLGDTINMLANSLRSGYSLLQSMELVSREAPEPTASEYRRVVQEVGLG 198

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L   +++  +++ +P +++    T + +Q + GGNL++ L  +   +R+R  +K ++  L
Sbjct: 199 LRTEDALDNLLKRVPSEDLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVL 258

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVA-AAFMLIGIMV 178
           + + + SA++I  LP  ++  +   +P YM  + +    P     L VA    ++IG   
Sbjct: 259 TAQGRISAYVITGLPIGLAIFITVINPNYMAPMFSFGMPPEHWCCLPVAGIVMIVIGFFA 318

Query: 179 MRLMINFDV 187
           +  +++ +V
Sbjct: 319 IMKIVDIEV 327


>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
          Length = 320

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RT +F + FP+AL I  RS+RAG     A+ ++  ++  PV   FR   E Q 
Sbjct: 134 LRVKTERRTTRFTEQFPDALSIAARSLRAGHSFPTAIQLVGQEAPSPVGPLFRTAYEQQQ 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL + +++ RM   +   ++ FF+T++++ S +GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRMVDALMRMNERIDSLDLRFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + + + S +++ +LP     +     P Y   LIN+P G  +L  AAA  ++G +V+R
Sbjct: 254 VYTAQGRLSGYVLAALPIATFGIFSMLHPNYERALINEPLGLYVLIGAAAMQIVGFLVIR 313

Query: 181 LMINFDV 187
            ++   +
Sbjct: 314 KIVRIRI 320


>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
           Och 149]
          Length = 320

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 96/183 (52%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +    G  
Sbjct: 138 ANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRD 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+A++ 
Sbjct: 198 VGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITA 257

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P     ++    P Y + + +         +   F+ + + VMR++ +
Sbjct: 258 EAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGVFLALNLFVMRILTD 317

Query: 185 FDV 187
             V
Sbjct: 318 IKV 320


>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 283

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 97/186 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K L K+R  KF+   P+AL++I  S+++G  VS A+  +  +   P++ EF+     Q L
Sbjct: 98  KFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQAPIKQEFQLFQREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  M + +P  E    +  + +  ++GGNL+E L  LS  LR +  M+ K+ A
Sbjct: 158 GVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEMEGKIDA 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +  ++Y   P  M  ++ +P G  L+ +    +  G + +R 
Sbjct: 218 LTSQGKMQGIVMTMLPLFIGFVLYHMEPKSMGRILTEPMGWALMALIFIMLTSGYLSIRK 277

Query: 182 MINFDV 187
           ++  DV
Sbjct: 278 IVAIDV 283


>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 322

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P S A+ ++  + +DP+ +E   + +   
Sbjct: 136 VNSKAKKRMSMIEEQLPDAVELMVRSLRVGHPFSSAINIVAKEVADPLGTEMGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+  M   M +Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V+
Sbjct: 196 YGRDMGESLKAMAERMDMQDLRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y + ++          V  AF+++ + VMR
Sbjct: 256 AITAEAKWSGMFLSGFPLLALVAINLLQPNYYDDVMETAVFIPACLVVGAFLVVNVFVMR 315

Query: 181 LMINFDV 187
            + N  V
Sbjct: 316 HLTNIKV 322


>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 310

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 92/180 (51%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R A F D   ++L ++  S+RAG  +  AV  +  +++ P   EF R++    +G  L 
Sbjct: 130 RRQAAFADQLDDSLQLMASSLRAGHSLLRAVDAVSTEAAAPTSEEFARIVNETRVGRDLG 189

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   M   +  + +  I +  ++GGNL+E L  +   +R+R  ++ +V+ALS E 
Sbjct: 190 DALDEVAERMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEG 249

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K SA ++ +LPF +   +  T+P Y+        G++++      + +G + ++  +   
Sbjct: 250 KLSAVVLMALPFGIVGFLSVTNPAYLAGFTEGLAGYLMIAAVVVLLTVGGLWLKKTVAIR 309


>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
 gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
           KT99]
          Length = 325

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR       FP+ LD+I R+++AG   +DA+ +   +   P+  EF+ +    +
Sbjct: 139 LNRDTNKRMDTIEASFPDGLDVIRRALQAGYSFTDAIKLATEELEGPLAKEFKLMFVNIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  ++   ++ +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YTKDIKLALLGFIQRVPSVSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +P Y+  L     G  LL      M+IG   + 
Sbjct: 259 TLSAEGRLSAWILILLPFALFAVIYLQTPAYVGELTGTEAGQKLLMWGGVGMIIGGWWIS 318

Query: 181 LMINFDV 187
            +I  DV
Sbjct: 319 RIIKIDV 325


>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 223

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 36  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 95

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 96  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 155

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 156 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 215

Query: 182 MINFD 186
           + N D
Sbjct: 216 IANLD 220


>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 322

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 99/183 (54%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A   +  P+A++++VRS+R G P + A+A++  + +DP+ +EF  + +    G  
Sbjct: 140 AKKRIALMEEQLPDAVELMVRSLRVGHPFASAIAIVSKEVADPLGTEFGIIGDEAAYGRD 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++ES+      M  Q++ F S  +++Q Q GGNL+E L  L++++R R  +  +V+A++ 
Sbjct: 200 VTESLKAFAERMDNQDLRFLSVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITA 259

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P     ++    P Y + +           V   F+ I ++ M++M+N
Sbjct: 260 EAKWSGMFLSAFPIGALVMILMLKPDYFDKVKETSAFVPAALVVGVFLTINVIFMKMMVN 319

Query: 185 FDV 187
             V
Sbjct: 320 IKV 322


>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 333

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGSDLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + +A ++ +LP      ++  +P +   +  D    +         LIG   +R
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQDSMFIIGFVGLIVLYLIGFFTIR 326

Query: 181 LMINFDV 187
            M++  V
Sbjct: 327 RMVDLKV 333


>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
          Length = 331

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 323

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 95/162 (58%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+AL+++ R++R+G  ++  + V+V +  DP+  EF    E Q+LG+ + +++  +  
Sbjct: 151 QLPDALELVARALRSGHSLASGLQVVVQEMPDPISREFGMAYEEQNLGVPIDQALKNVFH 210

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +P  +  FF+T +++Q Q GG+L+E L  +  I+R+R  +  +VQAL+ E + S  ++ 
Sbjct: 211 RVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQALTGEGRISGIVLM 270

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           +LP  +  ++Y+ +P YM +L  +  G  ++  A    ++G 
Sbjct: 271 ALPIVLFFVMYYLNPEYMMLLFTEEMGRKMIAGAVVMQILGA 312


>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
           10229]
 gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
 gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
          Length = 331

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
 gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
           1710b]
 gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 331

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
          Length = 331

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 320

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 96/183 (52%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR A   +  P+A++++VRS+R G P S AV ++  +  DP+ SE   + +    G  
Sbjct: 138 ANKRLAMIEEQLPDAVELMVRSLRVGHPFSSAVQIVSKEVQDPLASEMGVIADESAYGRD 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +++  M   + +Q++ F +  +++Q   GGNL+E LA L++++R R  +  +V+A++ 
Sbjct: 198 VGDALKEMAERLDMQDLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITA 257

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S   + + P     ++    P Y + + +         +   F+ + + VMR++ +
Sbjct: 258 EAKWSGKFLSAFPVVALIVINVGDPNYYDAVRDHAYFIPACFLVGIFLALNLFVMRVLTD 317

Query: 185 FDV 187
             V
Sbjct: 318 IKV 320


>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 320

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 1/181 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +P+  EF R  E Q LGL+L 
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEMPEPICVEFARAYEEQRLGLTLE 198

Query: 67  ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA I+G+LPF V+  +   +P Y+ VL    RG M++  A+   ++G++ +  +   
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTARGQMIILGASVSWVVGLLWLYRLTQV 318

Query: 186 D 186
           D
Sbjct: 319 D 319


>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 332

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   F +   + + ++  ++R G      + ++  ++  P  +EFRRV++   
Sbjct: 142 VNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSREAPPPAATEFRRVVQEVG 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  E++  ++R MP  ++    T +++Q ++GGNL++ L  +   +R+R  +K ++ 
Sbjct: 202 LGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKGEIS 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFML-IGI 176
            L+ + + S+WII  LP  ++  +   +P YM  L      P+    + VA+ FM+ +G 
Sbjct: 262 TLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFGFPPQAWCCMPVASLFMIAMGY 321

Query: 177 MVMRLMINFDV 187
             ++ +I+ +V
Sbjct: 322 FAIQKIIDIEV 332


>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
          Length = 331

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 144 RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 203

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 204 GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 263

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 264 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 323

Query: 182 MINFD 186
           + N D
Sbjct: 324 IANLD 328


>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 322

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   +   P      +    P Y N  +        + V   F+++ ++VMR
Sbjct: 256 AITAEAKWSGKFLSGFPIMALIGIQVIKPDYYNEAMEHAFFIPAVLVVGVFLVMNLIVMR 315

Query: 181 LMINFDV 187
            ++N  V
Sbjct: 316 ALVNIKV 322


>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
 gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
          Length = 330

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 122/187 (65%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   
Sbjct: 144 LGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L E++ R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KVQ
Sbjct: 204 IGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSDVLRARKRMRDKVQ 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + EA+ASA IIGSLP  V  ++   +P Y+ +L     G++LL +      +G++VMR
Sbjct: 264 AYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFTSDLGNILLAIGVGTEAMGVLVMR 323

Query: 181 LMINFDV 187
            MINFD+
Sbjct: 324 NMINFDI 330


>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
 gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
          Length = 294

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 93/182 (51%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR A F    P AL II   +R+G     A+A +     +P+  E +RVI   + G  
Sbjct: 112 KKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPNPISEELKRVIREVNYGRK 171

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ES+  +       E+   ++ +++Q + GGNL+E +  ++  + DR N++ +++ L+ 
Sbjct: 172 LEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEKVTETINDRINIRNQIRVLTT 231

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + + S  +IG LP  +  ++ + SP YMN       G ++L V+      G ++++ ++N
Sbjct: 232 QGRYSGMLIGLLPVFLLIILTWISPNYMNSFFKTSIGKVMLVVSVILETTGFLLIQKIVN 291

Query: 185 FD 186
             
Sbjct: 292 IK 293


>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 327

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 120/186 (64%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K R  KF   F +A+DI+VR ++ GLPV D   +I  +S +P+  EFR ++E   
Sbjct: 141 IGMKAKARMKKFSLAFADAIDILVRGIKTGLPVHDCFKIIARESPEPLAGEFRTLVEGMG 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GL+L++++ +M   MP  E+ FF+ VI++Q + GGNL+EAL NL+ +LR R+ M  K++
Sbjct: 201 VGLTLAQALDKMYERMPTPELKFFAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA ASA II SLP  V  LV  ++P YM ++  D RG ++L  AA +M  G+ VM+
Sbjct: 261 ALSSEAIASAGIIASLPPAVMILVMLSNPSYMMLMFTDIRGQVMLMGAALWMATGVFVMK 320

Query: 181 LMINFD 186
            MI+F 
Sbjct: 321 RMISFK 326


>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
 gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 293

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 100/182 (54%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  + ++  P  LD  VRS+++G  ++DAV   +  S+DP++S   R+     LG
Sbjct: 110 WLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGAIEASNDPLKSAMGRIQRNVQLG 169

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++S    +    E+  F+  + V  + GGN SE L NL +++R+R+    ++ A+
Sbjct: 170 VNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGARQLSAM 229

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +AW++G+LP  +      T+PGYM  + +D  G  +L  A    + G + +  M
Sbjct: 230 TGETRMTAWVLGTLPLLLVGYFMLTNPGYMLGMWHDSAGQKMLITAVCLQIFGCLALWRM 289

Query: 183 IN 184
           + 
Sbjct: 290 LR 291


>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 216

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 29  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 88

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 89  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 148

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 149 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 208

Query: 182 MINFD 186
           + N D
Sbjct: 209 IANLD 213


>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 217

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 30  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 149

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 150 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 209

Query: 182 MINFD 186
           + N D
Sbjct: 210 IANLD 214


>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/185 (47%), Positives = 126/185 (68%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K R  KF  +FPNA+D+IVR +++GLPV +   +I  +S  P+   F++++E   +G
Sbjct: 142 FLAKARMKKFSLEFPNAVDVIVRGIKSGLPVHECFKIIARESPAPLGPAFKKLVEALGVG 201

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++L +++ +M   MP  E+ FF+ VI++Q + GGNL+EAL+NLS +LR R+ M+ KV+AL
Sbjct: 202 MTLEQALDKMFEQMPTPELRFFTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKAL 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EA ASA II SLP  V T+V FTSPGYM  L  D RG+ LL +A A M  GI VM+ M
Sbjct: 262 SSEALASAGIIASLPPAVMTMVMFTSPGYMMALFTDIRGNALLLLAGALMGTGIFVMKRM 321

Query: 183 INFDV 187
           I+F +
Sbjct: 322 ISFKI 326


>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
 gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
           SKA53]
          Length = 320

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R     +  P+A+D++VRS+R G P S A+ +   +  DP+ +E   + +   
Sbjct: 134 ISRKATQRINLISEQLPDAVDLMVRSLRVGHPFSSAINIAAKEVPDPLGTEIGIIADETA 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   +  Q++ F +  +++Q   GGNL+E L  LS+++R R  +  +V+
Sbjct: 194 YGRDMGETLKAMAERLDNQDLRFLAVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S  ++ + P      +    P Y + ++  P       V AAF+++ ++VMR
Sbjct: 254 AITAEAKWSGNLLSAFPILALIGINLVQPNYFDDVMESPMFIPACFVVAAFLVLNLIVMR 313

Query: 181 LMINFDV 187
            + N  V
Sbjct: 314 ALTNIKV 320


>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 323

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  KF     +AL I+  S+R+G     A+ ++  +   P+  EF   ++  +
Sbjct: 137 LRLAKTKRLVKFNGQIGDALIIMANSLRSGFSFLQAMDMVRKEMPGPIAKEFGAALQEMN 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G    E++  MV  +  +++    T + +Q Q+GGNL+E L  ++  +R+R  +K +++
Sbjct: 197 WGTPTEEALLNMVSRVNSEDLELVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  IIG LP  +S  ++  +  YM VL     G  ++  A  F ++G+ +++
Sbjct: 257 TLTAQGRISGLIIGLLPIFLSIAIFLLNHAYMKVLFTSKAGLTMVSCAVLFQVLGLALIK 316

Query: 181 LMINFDV 187
            +I   V
Sbjct: 317 KIIKIPV 323


>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 300

 Score =  167 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 99/183 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+KKR   F + FP+AL+I++ ++ AG  +  A++ +    +DP+  EF+ + +   L
Sbjct: 114 RYLVKKRRTNFENTFPDALNILMSAITAGDSLMQAISYVGDVMNDPIGVEFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +    + R  +  P  E  FF+  +      GG L   LA L R+L D + +  K  A
Sbjct: 174 GETPEVVLQRSCKNYPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N +++DP G ++L        +G++++ L
Sbjct: 234 MTSEARISAKIVAAIPVIFMIILNYINPDNLNFVLHDPSGRIVLFYVLGSEFLGLLIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 212

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 25  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 84

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 85  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 144

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 145 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 204

Query: 182 MINFD 186
           + N D
Sbjct: 205 IANLD 209


>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
 gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
           multacida DSM 20544]
          Length = 319

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 90/177 (50%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            KF +   + L ++  ++RAG     A  +I  +   P+  E + V+   +LG +L  ++
Sbjct: 142 KKFTNQLGDMLTMVANALRAGFSFMQAFELISREMDAPMGREVQLVVNEVNLGNTLESAL 201

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R +   +     T + +Q Q+GG+L+  L  +S  + +R  M+ +V  L+ + + S
Sbjct: 202 DNMQRRVASPDFELVVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLS 261

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             ++  LPF ++ ++ F  P Y+  L+ D  G +++G+A    LIGI  ++ + +  
Sbjct: 262 GIVLAILPFAMAGILTFIKPDYLKPLLEDEVGRIIIGIAIVSELIGIFFIKKITDIR 318


>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 313

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 113/186 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++HL ++R A+F    P+AL ++  ++RAG  +  A+ V+  +   P+  EF R +    
Sbjct: 127 LRHLRRQRLARFQSQLPDALSLMANTMRAGFGMLQAMDVVRREMPPPISQEFGRTLAELG 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + E++ R+   +P  ++    T + +Q Q+GGNL+E L N++  +R+R  +K +++
Sbjct: 187 LGMGVEEALERLSHRVPSDDLDLAVTAVIIQRQVGGNLAEILDNIATTIRERVRLKGEIR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + + SA IIG LP  ++ ++   +P Y+  LI +P G ++LG+ AA  ++G++++R
Sbjct: 247 ALTAQGRISALIIGLLPLALALILSLINPSYLLTLIYEPLGRIMLGLGAAGEIVGVLLLR 306

Query: 181 LMINFD 186
            +   +
Sbjct: 307 KITEVE 312


>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 329

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 106/184 (57%), Gaps = 4/184 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R   F +   + + ++  S+R+G  +  ++ ++  ++  P+  EFRRV++   LGLSL +
Sbjct: 146 RLKAFNNQLGDTVGLLANSLRSGYSLLQSMDLVSREAPPPISVEFRRVVQEVGLGLSLED 205

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++ ++R +P  ++    + I++Q+++GGNL+E L  ++  +R+R  +K +++ L+ +A+
Sbjct: 206 GMNNLLRRVPSDDLDLMVSAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQAR 265

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLI-GIMVMRLMI 183
            S +++  LP  ++ ++   +P YM  L+     P     + V +A M+I G   ++ ++
Sbjct: 266 YSGYVVTFLPISIAVIITMLNPDYMAPLMTIGMPPDAWCCMPVCSAMMMIGGFFAIKSIV 325

Query: 184 NFDV 187
           N ++
Sbjct: 326 NIEI 329


>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 311

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R  KF     +AL I+  S+RAG     A+A I     DP+  EF +V     
Sbjct: 125 IKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPDPIGPEFLKVCREVE 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +S++ +   M  +E+   +T +S+Q Q+GGNL++ L N+   +R+R  ++  ++
Sbjct: 185 LGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNIGEAIRERITIQKNIK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +   SA +I  LP  V  L+   +  YM  +   P G+ LLGV+A   ++G  +++
Sbjct: 245 ALTAQGDVSAKVIAGLPVVVLVLISMVNKEYMEPVFTTPFGYALLGVSATLEIMGYAMIK 304

Query: 181 LMINFDV 187
            + N ++
Sbjct: 305 KITNIEM 311


>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 323

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 106/187 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+   ++R   F D  P  LD+I  S+R G  +  ++A + G   +P+R+E RRV +   
Sbjct: 137 MRIRRQRRKQAFSDQLPETLDLITASMRGGFSLVQSLANVAGDVQEPMRTELRRVFQEVQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLS+++++  +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+
Sbjct: 197 LGLSITQALDNLVQRMESTDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVR 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++   + S+++IG+LPF ++ +++  +P YM  L        +   A    + G +++R
Sbjct: 257 VITSMQRISSYVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFVSSVAGFLIIR 316

Query: 181 LMINFDV 187
            +++  +
Sbjct: 317 KIVDVRI 323


>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
 gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
          Length = 330

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 143 RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 203 GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 263 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 322

Query: 182 MINFD 186
           + N D
Sbjct: 323 IANLD 327


>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 321

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++ KKR + F +  P+AL +I RS+RAG  ++ AV ++  ++ +P+   FR   E Q 
Sbjct: 134 VSNVRKKRYSSFTEQLPDALTMIARSLRAGHSLTSAVELVGSETPEPLGGLFRAAYEQQK 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGL +++++  M++ M   ++ FF TVI++ ++ GGNLSE L  L+  +R+R  ++ +VQ
Sbjct: 194 LGLRITDALGGMLQRMDSLDLRFFVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQ 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV-YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + + + S +I+ +LP      + Y   PGY +V + + +GH  +  A    +IG + 
Sbjct: 254 VYTAQGRMSGYILVALPIFAFFFLQYVMLPGYEDVFMKETKGHYAIAYAIISQIIGFLF 312


>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 320

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 1/181 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+AK  +  P ALD++ RS+RAG  V+ A  V+  +  +PV  EF R  E Q LGL+L 
Sbjct: 139 KRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEMPEPVSVEFARAYEEQRLGLTLE 198

Query: 67  ESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ +M    P   ++  F+    +Q + GGNL+E L  +   +R R     K++AL+ E
Sbjct: 199 RAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYRFYGKLRALTGE 258

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +ASA I+G+LPF V+  +   +P Y+ VL    +G M++  A+   ++G++ +  +   
Sbjct: 259 GRASAVILGALPFAVAVALSILNPEYLMVLPGTAKGQMIILGASVSWVVGLLWLYRLTQV 318

Query: 186 D 186
           D
Sbjct: 319 D 319


>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 321

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 99/172 (57%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL++I R ++AG PV  A+A++  +  DP+ SEF  + +    G  L  +++ +  
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPDPIGSEFGVIADEVTYGSDLVSALNSLFD 208

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            +  +++  F T +S+Q+  GGNL E L  L+  +R+R  ++ KV+A++ E + SA+I+ 
Sbjct: 209 RVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSAYILT 268

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           ++P  +   +    PG+ + +  +P+   LLG +  ++++G ++M  M NF 
Sbjct: 269 AVPALLFAAIMALMPGFYSDVWGEPKTWYLLGASITWLMLGNLMMFKMSNFK 320


>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 326

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R   F    P  L ++  S+ AGL ++ +   +  + +DPV +EFRR +    
Sbjct: 140 LGVRRGRRRKAFSAAVPETLQLMSGSLSAGLSLAQSAETVTREGADPVAAEFRRALVETR 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++  +       ++++    I +Q Q+GGNL+E L  ++  +R+R+ ++ +V 
Sbjct: 200 LGVPLEDALEGVADRFDSADLAWAVMAIRIQRQVGGNLAELLDTVAETMREREYVRRQVA 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAW++GSLP    T +   +  Y+  L  DPRG +LL  AA ++ +G   M 
Sbjct: 260 ALSAEGRLSAWVLGSLPVAFLTYLLLVNREYVMPLFEDPRGIVLLAGAALWLAVGAFWMS 319

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 320 RLVRVEV 326


>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 328

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 107/187 (57%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +    F  A+DI  R++RAG PV+ A++++  + +DP+ +EF  V +   
Sbjct: 142 LNRSAEKRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMADPIGTEFGLVADEIA 201

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L++S+  +     L+++  F+  +SVQS+ GGNL+E L NL+ ++RDR ++  KV+
Sbjct: 202 YGANLNDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVR 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E +ASAW++  LP     +++  +P +   +  DP             LIG++ +R
Sbjct: 262 ALSSEGRASAWMLSVLPALTMLVLFMINPSFYLEVSGDPLFATSFAGMIGLYLIGVLWLR 321

Query: 181 LMINFDV 187
            M++  V
Sbjct: 322 SMVDLKV 328


>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 319

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 99/185 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K +  +R A      P AL+IIVRS+ AG PV  A+A++  + SDPV +EF    +    
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSDPVGTEFGMAADEIAY 193

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +L ++I RM       +V  F+  + +Q + GGNL+  L   +  +R+R  M+ K++A
Sbjct: 194 GANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLKIKA 253

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            S E +ASA I+ + PF    ++   SP +   +I++P     L     ++ IG +VMR 
Sbjct: 254 ASAEGRASAMILSAAPFIAVGMIMIISPKFYGDVIHEPAVKWGLLGLTVWVGIGNLVMRR 313

Query: 182 MINFD 186
           MI+  
Sbjct: 314 MIDMK 318


>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
 gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2150]
          Length = 323

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR     +  P+A++++VRS++ G P S A+A +  +S DP+ +EF  + +    G  
Sbjct: 141 AKKRLGMMEEQLPDAIELMVRSLKVGHPFSSAIAAVAAESPDPIGTEFGVIADEAAYGGE 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +++S+  M   + +Q++ F + V+ +Q++ GGNL+E L  L+ ++R R  +  KV A++ 
Sbjct: 201 ITDSLQEMAERLDMQDLRFLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITA 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S + + + P      +  T P + + ++        + V A  ++I I+ MR+M N
Sbjct: 261 EAKFSGFFLSAFPILALIGMLITKPDFYDEVMETSMFVPAVIVVAFLLIINIVFMRVMTN 320

Query: 185 FDV 187
             V
Sbjct: 321 IKV 323


>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 307

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F + FP+AL+++  +V AG  +  AV  +       V  EF+R+ E   LG
Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 IN 184
           + 
Sbjct: 302 MR 303


>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 323

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 101/183 (55%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR  KF +  P ALDI+ R+++AG P  + + V   +  DP+  EFR      + G++
Sbjct: 141 RDKRIGKFEEQLPEALDIMSRAMKAGYPFVETLHVASEEMRDPLAKEFRTTFADINYGMN 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +   +++ +P   +    T + VQ   GGNL+E L  ++ ++R R   + KV+  + 
Sbjct: 201 IKTAFLSLLQRVPSMSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTA 260

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           E + SAWI+  +PF +S  ++  +P Y+ +L+ +P G  L+ +A   +++G+  MR +I 
Sbjct: 261 EGRLSAWILTLVPFVLSAALHVINPEYLPMLVKEPLGRTLILLAFINIMVGVFWMRRIIR 320

Query: 185 FDV 187
            DV
Sbjct: 321 IDV 323


>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 325

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 117/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +  A+FL  FP+ LD+I+R+VRAG+PV  A++    ++ +PVRS FR + ++  L
Sbjct: 138 RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQAISTAGKEAEEPVRSTFRTMGDSLRL 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E + + V  + + + SFF+  + +Q + GGNL E L NLS I+R R++++ K +A
Sbjct: 198 GADLKEVLDKAVARLQIADFSFFAVCLLLQRETGGNLGETLENLSGIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF +   +Y  +  Y+++L +   GH +L +AA  ++IG+ +++ 
Sbjct: 258 LTAEGRIASKIISAVPFAIMGFLYVINRPYVDLLFHTRAGHKMLTLAAVLLVIGLSLIQK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
 gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
           12B01]
          Length = 300

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 95/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R  +F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRREFENTFPDALNILMSAVTAGDSLMQAISYVGDVMHNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   +A L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +  ++ DP G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMLILNYVNPDNVEFVLYDPEGRLVLFYVLGSELFGLFLVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
 gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
          Length = 310

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 92/186 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R   F D FP+AL++I R+VRAG     A+ ++   S DP+  EFRR  +   
Sbjct: 124 LIWIKNRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSEDPIGVEFRRCAKQLD 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +GLS  +++  M   + L +V  F+T ISV  + GG L E L  L+ ++RDR     +++
Sbjct: 184 VGLSAPKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAYHRQLR 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +++   + SA II  L   +        P Y +     P G  LL  A     +G+  + 
Sbjct: 244 SITSSGRMSATIIALLAPLLLVFFLLFQPEYFSEFFAHPWGRYLLLFALVSEALGLYFVY 303

Query: 181 LMINFD 186
            ++  D
Sbjct: 304 RLVRAD 309


>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 205

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 18  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 78  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197

Query: 182 MINFD 186
           + N D
Sbjct: 198 IANLD 202


>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 202

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 15  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 74

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 75  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 134

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 135 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 194

Query: 182 MINFD 186
           + N D
Sbjct: 195 IANLD 199


>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
          Length = 204

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 17  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 76

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 77  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 136

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 137 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 196

Query: 182 MINFD 186
           + N D
Sbjct: 197 IANLD 201


>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
          Length = 200

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 13  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 73  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 133 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 192

Query: 182 MINFD 186
           + N D
Sbjct: 193 IANLD 197


>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 307

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F + FP+AL+++  +V AG  +  AV  +       V  EF+R+ E   LG
Sbjct: 122 WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLDGKVGKEFKRMGEQLQLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    Q GG L E +  L+R++   + ++ K  AL
Sbjct: 182 ESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVMKRLNRLMFGARAIEKKKLAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+ ++PF    ++ + SP     ++ +P G  +L        IGI+++ L+
Sbjct: 242 TSEARASAKIVAAIPFIFLFMLQYLSPENYEFVMFNPAGRPILYYVLISESIGILIIWLL 301

Query: 183 IN 184
           + 
Sbjct: 302 MR 303


>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 235

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 118/183 (64%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +G 
Sbjct: 50  LIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRVGA 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +AL+
Sbjct: 110 DLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRSRRDIRLKSRALT 169

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +  II ++PF +   ++  +  Y+ +L     GH +L +AAA ++IG++V+R + 
Sbjct: 170 AEGRITTNIISAVPFVMIGALFLVNRPYIMLLFTTHAGHTMLTIAAALLVIGLLVIRKIS 229

Query: 184 NFD 186
             +
Sbjct: 230 RLE 232


>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 205

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 18  RILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 77

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 78  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 137

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+N+L +   GH +L +AA  + +G+ ++R 
Sbjct: 138 LTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLFHTRAGHKMLILAAVLLTVGLAMIRK 197

Query: 182 MINFD 186
           + N D
Sbjct: 198 IANLD 202


>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 317

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 114/187 (60%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +  A F  D P ALDI  R +RAG PV+D++A++V  +  P+  EF R  +   
Sbjct: 131 LSIAQSRYKATFAADLPEALDIFARGLRAGRPVTDSMAIVVDNAKGPILREFTRCHDEVR 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L E++ R+   +PL EV+FF+   ++Q++ GGNL E + NL+  LR+R+ ++ K +
Sbjct: 191 MGNTLPETLERLSARLPLPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKAR 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS EA+ASA I+ +LPF V+ L+   +  Y+  L +DPRG  +   AA+ + +GI VM 
Sbjct: 251 ALSSEARASAVILAALPFAVAVLIAVLNGDYLEPLYSDPRGRFMSVTAASSIGLGIFVMV 310

Query: 181 LMINFDV 187
            M   +V
Sbjct: 311 RMGKLNV 317


>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
 gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
           cinnamea P4]
          Length = 314

 Score =  164 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 92/173 (53%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D   ++L ++  S+RAG  +  A+A +  ++  P   EF R+I    +G  L+ ++    
Sbjct: 141 DQLDDSLQLMASSLRAGHSLLQALASVAREAEQPTSEEFARIINETRVGRELAPALEETA 200

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             M  Q+  + +  I++  ++GGNL+E L  +   +R+R  ++ +VQAL+ E K SA+++
Sbjct: 201 NRMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSAYVL 260

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +LPF +   ++ ++P Y+ VL   P G  ++      + IG + +  ++   
Sbjct: 261 MALPFGIGGFLFVSNPSYIGVLTQSPLGWGMIAAGVVMLTIGGIWLSKVVRIR 313


>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 301

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 100/175 (57%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL++I R ++AG PV  A+A++  +  DP+ +EF  + +    G  L  +++ 
Sbjct: 126 FGMQLPEALELITRGLKAGHPVPVAIAMVSREMPDPIGTEFGVIADEVTYGSDLVSALNS 185

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   +  +++  F T +S+QS  GGNL E L  L+  +R+R  ++ KV+A+S E + SA+
Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAY 245

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           I+ ++P  +   +    PG+   + ++P+   L+G +  ++++G ++M  M NF 
Sbjct: 246 ILTAIPALLFAAIMALMPGFYRDVWDEPKTWYLIGGSVTWLMLGNLMMFKMSNFR 300


>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    KR  +F       L ++  S+RAG     A+      +  P++ E  R++    
Sbjct: 128 VKMRTAKRRREFNAQLDGMLQMLASSMRAGQSFQQAMGSCARDADSPMQDELTRILNENR 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  S++     M  ++  + +  + +  + GGNL+E +  +++++RDR  ++ KV 
Sbjct: 188 LGRDIIASMNDTAERMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIREKVH 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + S++I+ SLP  ++    F +PGY++ L +   G  L+G +     I  + MR
Sbjct: 248 AYASEGRFSSYILMSLPLLIAVAYSFITPGYLDPLFSTGLGLALVGGSVVMYTIAFLWMR 307

Query: 181 LMINFDV 187
           ++++  V
Sbjct: 308 IIVDIKV 314


>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 333

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 98/176 (55%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
               FP ALDI VR +R+G P+  A+ ++  +  DP+ +EF  V +    GL L E+++R
Sbjct: 158 MEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMEDPIGTEFGIVTDEIAFGLDLREALAR 217

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M     L ++  F   +SVQ + GGNL+E L NLS+++RDR +M  KV+ALS E + +A 
Sbjct: 218 MAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKVRALSSEGRMTAV 277

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+ +LP      ++ T+P +   +  DP   +  G      L+G   +R MI+  V
Sbjct: 278 ILTALPILAFVGLFLTNPVFYLDVATDPIFFIGFGGLILLYLVGFFTIRRMIDLKV 333


>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
 gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
          Length = 321

 Score =  164 bits (416), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 98/183 (53%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR     +  P A++++VRS+R G P S A+A++  +  DP+ +E   + +    G  
Sbjct: 139 AKKRMNMLAEQLPEAVELMVRSLRVGHPFSSAIAIVAREVPDPLGTEIGMISDEAAYGRD 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E++  M   +  Q++ F +  +++Q   GGNL+E L  L++++R R  +  +V A++ 
Sbjct: 199 MGETLKSMAERLDNQDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITA 258

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EAK S  ++ + P      +    P Y + ++  P     + +  AF+++ ++VMR +++
Sbjct: 259 EAKWSGNLLSAFPIFALMGINLVKPDYYDDVMESPLFIPAVLIVVAFLVVNLLVMRALVD 318

Query: 185 FDV 187
             V
Sbjct: 319 IKV 321


>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 302

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +L++KR   F + FP+AL+I++ +V +G  +  A+A +     + +  EFR + E   L
Sbjct: 117 NYLMRKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQSLDNQIGLEFRDMGERLKL 176

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    +   R  +  P     FF   I      GG L   +A L R+L D + +  K  A
Sbjct: 177 GEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLKSVMARLIRVLMDARTLDKKKAA 236

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ SLPF    L+ + SP  ++ ++ DP G  +L        +G+ ++ L
Sbjct: 237 MTSEARLSAKIVASLPFFFMILLSYLSPQNLDFVLTDPSGRYILYYVVGSEALGMFIIWL 296

Query: 182 MIN 184
           +I 
Sbjct: 297 LIR 299


>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 321

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 111/187 (59%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R A F D FP+ L+ + RS+RAG   S A+ +   + SDP+  E RR  E Q+
Sbjct: 135 VRRKARMRVAAFEDQFPDCLEFVSRSMRAGHAFSVAIEMAHREFSDPLAGELRRAFEEQN 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L   + ++ + +P  +V FF + + +Q + GGNL+E L  L++++R+R  ++A+++
Sbjct: 195 LGQPLEIVLRKLSQRVPSMDVQFFVSAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S +   S  I+ ++P  V+ +++  +P Y    I+DP GH L+       L+G +++R
Sbjct: 255 AVSAQGLMSGRILSAIPAGVAVMMFLVNPKYARFFIDDPVGHELMAAGLGLQLLGYLIIR 314

Query: 181 LMINFDV 187
            ++ FDV
Sbjct: 315 KIVTFDV 321


>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
 gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 294

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 96/182 (52%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R  + ++  P  LD  VRS+++G  ++DAV   V    +P+R    RV     +G
Sbjct: 111 WRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +S+S    +    E   F+  + V  + GGN SE L NL +++R+R+    +++A+
Sbjct: 171 VSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A+++G LP  +       +PGY+  + +D  G ++L  A A  L G  +M  M
Sbjct: 231 TGETRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRM 290

Query: 183 IN 184
           + 
Sbjct: 291 LR 292


>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
          Length = 219

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 32  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 91

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 92  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 151

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 152 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 211

Query: 182 MINFD 186
           + N D
Sbjct: 212 IANLD 216


>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 305

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 85/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++   +F + FP AL+++  +V +G  +  A+  +       V  EF+ + +   LG
Sbjct: 121 WLQRREKKQFEEAFPEALNMLTSAVSSGESIMHAIIFVGTALDGEVGKEFKLMGDRLRLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++ D + ++ K  AL
Sbjct: 181 DSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKFAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ASA I+G++PF    L+ + SP     ++  P G  +L        IGI ++  +
Sbjct: 241 TSEARASAKIVGAIPFVFLFLLQYLSPENFEFVMFHPSGRPILYYVLISEAIGISIIWAL 300

Query: 183 IN 184
           + 
Sbjct: 301 MK 302


>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 300

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 99/183 (54%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +    ++P+  EF+ + +   L
Sbjct: 114 RFLVGRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAMNNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P   + ++ + +P  ++ ++NDP+G  +L       LIG+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFTVILNYVNPANVDFVLNDPQGQYVLFYVLGSELIGLSIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 284

 Score =  163 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L K+R  +  D  P+ L ++  ++R G  +   +  +    S P+  E   V+  Q 
Sbjct: 98  LLYLKKRRFLRLHDQLPDTLLMMASALRGGANLGQTLEGLAKDMSPPMNQELSLVVREQR 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E++S +   +  Q+     + + +  ++GGNL++ L  L   +R R  M+ K++
Sbjct: 158 LGVPFEEAVSHLAERVRSQDFDLVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIR 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K    ++ +LP  +   +    P     L +  RG  +L +A    ++G   +R
Sbjct: 218 ALTSQGKLQGIVMTALPVLIILALLRIEPAATGALFDTYRGWAVLAIAIVLEILGYWGIR 277

Query: 181 LMINFDV 187
            +++ +V
Sbjct: 278 KIVSIEV 284


>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
          Length = 217

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 30  RMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  + + + +    + L + SFF   +++Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 90  GADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRMKTRA 149

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+ +L +   GH +L +A   + IG+ ++R 
Sbjct: 150 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLFHTRAGHKMLILAVVLLTIGLAMIRK 209

Query: 182 MINFD 186
           + N D
Sbjct: 210 IANLD 214


>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 309

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 97/186 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I K+  +F     +AL I+   +RAG  ++ A+  +     DP+ SEFR       
Sbjct: 123 LKMSINKKQIQFEKQLGDALQILANGLRAGFSLTQAIESLAKDMPDPLGSEFRTASRELL 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ +   +S++   M  +++   +  + +Q Q+GGNL+E L N+S+ +RDR  +K  V+
Sbjct: 183 LGMDIETVLSKIADRMKSEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVR 242

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  I+G +P  +  ++   SP Y ++      GH+++ ++     +G + + 
Sbjct: 243 TLTAQGRISGQIVGIIPIALLLIISIISPDYTSIFFTTTYGHIMIFISVIMECLGFLAIY 302

Query: 181 LMINFD 186
            +++  
Sbjct: 303 KIVDIK 308


>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 294

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  +R  KF     +AL +I  S++AG  ++ A+  +  Q+  P+  EFR +I+   
Sbjct: 108 LRQLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQNIHPISVEFRLLIQEIR 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ + +++  M R +  ++    +T I    Q GG L+  L  ++ ++R+R  +  KV+
Sbjct: 168 LGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKVR 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+   +  A +I   P  +   +++ +P  +   + +P G  LL VA  F +IG +++R
Sbjct: 228 ALTALGRLQAILIALTPVALLIGLWWINPVMIRAFVTNPIGIALLIVAGIFDVIGFLIIR 287

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 288 RIVTIEV 294


>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 315

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 94/184 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K+R  +    FP  LD IVR++++G  +  A+++I  +   P+  E + V     LG
Sbjct: 131 FKKKQRQNRLRQQFPEMLDAIVRALQSGYGIDGALSMIAEEFRAPLGKEVKEVNRQLTLG 190

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S+ + +      + + E  FF   + +Q + GG L+  L  LSR++R R+  +AK++ L
Sbjct: 191 ISMRDILRDFQTRIEIPEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTL 250

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E++ +A  +G  P       YF  P  M   +NDP G  +L ++   M+ G ++++ M
Sbjct: 251 TAESRFTAIFLGLAPLGYLGYKYFFDPDSMAFFLNDPTGQDILIISLVLMISGAIILKSM 310

Query: 183 INFD 186
           +   
Sbjct: 311 LRIK 314


>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 283

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 99/186 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L ++R  +F+   P+AL++I  S++AG  V++A+  +  +   P++ EF+  +  Q L
Sbjct: 98  RYLHQRRRRRFVHQLPDALNMIAASMQAGANVTNAIEFMADEMDAPIKQEFQLFLREQRL 157

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+  + ++  + + +P  E       + +   +GGNL+E L  LS  LR +  M+ K+ +
Sbjct: 158 GVEFNTALDNVYKRIPESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITS 217

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + K    ++  LP  +   +Y   P  M  ++ +P G  ++ V++  +  G M ++ 
Sbjct: 218 LTSQGKMQGIVMTLLPVAIGFTLYHMEPVSMGRILTEPVGWAVIAVSSLLLFGGYMTIKK 277

Query: 182 MINFDV 187
           +I  DV
Sbjct: 278 IITIDV 283


>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 315

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 94/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +  +
Sbjct: 129 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLN 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG ++ +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+
Sbjct: 189 LGRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVR 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      LV  ++ G +  +   P G  L+ ++ A   +G +V+R
Sbjct: 249 TMLSEVNATAFTVPMLGLGSLVLVNSSNEGALERVTGSPLGQALVLISLALYTVGFLVIR 308

Query: 181 LMINFDV 187
            +   +V
Sbjct: 309 RLGRIEV 315


>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
 gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 295

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G
Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +           P +E  FF ++I      GG + E ++ L R + D   M+ K +A+
Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  +
Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290

Query: 183 IN 184
           + 
Sbjct: 291 MR 292


>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 200

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 115/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + LI +   +FL  FP+ALD+I+R+VRAG+PV+ A+     +S +PVR+ FR + +   +
Sbjct: 13  RILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGRESEEPVRATFRAMGDALRV 72

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + + +    + L + SFF   + +Q + GGNL+E L NLS I+R R++++ K +A
Sbjct: 73  GADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRA 132

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + ++ II ++PF ++  ++  +  Y+++L     GH +L +AA  + IG+ ++R 
Sbjct: 133 LTAEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLFRTRAGHKMLILAAVLLTIGLAMIRK 192

Query: 182 MINFD 186
           + N D
Sbjct: 193 IANLD 197


>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 333

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 102/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  K  + FP ALD  VR +RAG P++ A+ ++  +  DP+ SEF  V++   
Sbjct: 147 LTRLAQRRRKKMEEQFPVALDTFVRGLRAGHPIAAALDLLTKEMRDPIGSEFGIVVDEVT 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ RM     + E+  F   +SVQS+ GGNL+E L NLS ++R+R ++  KV+
Sbjct: 207 YGADLRDALQRMAERWDMNEMHMFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVR 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + +A ++ +LP      ++  +P +   +  +    +         +IG + +R
Sbjct: 267 ALSSEGRMTAVMLTALPILAFVGLFLVNPAFYLDVAQEKMFIVGFVGLITLYIIGFVTIR 326

Query: 181 LMINFDV 187
            M++  V
Sbjct: 327 RMVDLKV 333


>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 295

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 80/180 (44%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  
Sbjct: 113 QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFAIIYKRLARGED 172

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +           P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ 
Sbjct: 173 VMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTS 232

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 233 EARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 292


>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 295

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G
Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +           P +E  FF ++I      GG + E ++ L R + D   M+ K +A+
Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  +
Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290

Query: 183 IN 184
           + 
Sbjct: 291 MR 292


>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 295

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G
Sbjct: 111 LGQRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +           P +E  FF ++I      GG + E ++ L R + D   M+ K +A+
Sbjct: 171 EDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  +
Sbjct: 231 TSEARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWL 290

Query: 183 IN 184
           + 
Sbjct: 291 MR 292


>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 309

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 103/183 (56%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   ++R  +F    P  LD++   +RAG     ++     Q   P+    ++V+    L
Sbjct: 124 RVRKQRRLQRFERQIPPMLDMVSSGLRAGFSFLQSLQNAGAQIEAPLGDTLQQVVAEISL 183

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L + ++R V  +   ++    T I +Q ++GGNL++ L N++R++RDR+++ A+++A
Sbjct: 184 GLDLEDVLNRWVERVGSLDLELAVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKA 243

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ + +    I+  LP  ++ ++   SPGY++ L +  +G ++LG A  F  IGI+V++ 
Sbjct: 244 LTSQGRLEGLIVSLLPVAMAVIINLLSPGYLSPLFSTQKGQVMLGTAIFFAFIGILVIQR 303

Query: 182 MIN 184
           ++ 
Sbjct: 304 IVR 306


>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
 gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
          Length = 325

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 119/185 (64%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++++   +++PVR+ FR + ++  +
Sbjct: 138 RALVERFRIRFLEAFPDAIDVIVRAVRAGIPVTQAISMVGDGAAEPVRATFRSMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTQAADRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   G+ +L +AA  + +G++V+R 
Sbjct: 258 LTAEGRITTNIISAVPFVMIGALFLVNRDYVMLLFSTHPGNTMLTIAAGLLTVGLLVIRK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
 gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
           SWAT-3]
          Length = 300

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 94/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ +R   F + FP+AL+I++ +V AG  +  A++ +     +P+  EF+ + +   L
Sbjct: 114 RFLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDNPIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ D  G ++L       L G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLVFMIILNYVNPDNVNYVLYDESGRVVLFYVLGSELFGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
           Pf0-1]
          Length = 293

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 98/182 (53%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R  + ++  P  LD  VRS+++G  ++DAV   +  S DP++    RV     LG
Sbjct: 110 WRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGAIDASEDPLKHAMGRVQRNVQLG 169

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL E++  +       E+  F+  + V  + GGN SE L NL R++R+R     +++A+
Sbjct: 170 VSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNASELLENLIRMIRERDQASRQLRAM 229

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +AW++G LP  ++     ++P Y+  + ND  G M+L  A    +IG +++  M
Sbjct: 230 TGETRITAWVLGLLPVGLAGYFLLSNPKYLIAMWNDHSGQMMLASAFGLQVIGSLLLWRM 289

Query: 183 IN 184
           + 
Sbjct: 290 LR 291


>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 322

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 96/181 (53%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR     D  P+A++++VRS+R G P++ A+  +  +  DP+ +EF  + +    G ++ 
Sbjct: 142 KRLKLAEDQLPDAVELMVRSLRVGHPLASAIQAVAKEIPDPLGTEFGIIADEAAYGRNVV 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+  +   + +Q++ F +  +S+Q   GGNL+E L  L++++R R  +  +V+A++ E 
Sbjct: 202 DSLRDLAERLDMQDLRFLAVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEP 261

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           K S   + + P  V  ++   +P Y + + + P       +  A +   ++ M++M    
Sbjct: 262 KWSGVFLSAFPVAVLVVIQVVAPTYYDNVKDSPSFVPAALIVFALLGANVLFMKIMTTIK 321

Query: 187 V 187
           V
Sbjct: 322 V 322


>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 325

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 96/183 (52%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K   +  +  P+A+D I RS RAG+PV++    +    S P+ +EFR +     L
Sbjct: 140 RSTLQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHLSGPLANEFRLIDHWLKL 199

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR R+ +  KVQ+
Sbjct: 200 GVPLRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQRRELALKVQS 259

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L NDP G  +L  A   + +G+++  L
Sbjct: 260 KTSEARASAKIVAALFPGCLGYMYLKSPEDFDFLFNDPVGSTVLVYALCSVTLGMVITHL 319

Query: 182 MIN 184
           M+ 
Sbjct: 320 MVK 322


>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 316

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 95/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R A+F     + L ++  S+RAG  +  AV  +  ++  P + EF R++    
Sbjct: 130 LSVMTSRRRAQFEAQLGDTLQMLSGSMRAGHSLLRAVDAVALEAQSPTKEEFARIVGEVR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L +++      +  ++  + +  I +  ++GG+L+E L +++  +R+R  +K +V+
Sbjct: 190 LGRDLRDALLDAANRLHSEDFLWATQAIEIHREVGGDLAEVLDHVAETIRERSQIKGQVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA+++ +LP  +   +   +  Y+  L   P G ++L VA   + +G   + 
Sbjct: 250 ALSAEGRLSAYVLIALPTGMFLYLSLANGTYIQPLFTHPVGWIMLVVAVVLLALGSFWLS 309

Query: 181 LMINFD 186
            ++   
Sbjct: 310 RVVKIK 315


>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
          Length = 295

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 4   LIKKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           L ++R  K F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G
Sbjct: 111 LGQRRNKKLFNEKFPEVIQVLNSATSSGISLLQALERCGKDITGPIGEEFSIIYKRLARG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                         P +E  FF ++I      GG + E ++ L R + D   M+ K +A+
Sbjct: 171 EDAMAVFHDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  +
Sbjct: 231 TSEARMSAAIVACFPVAFFLFMKVTTPENFDFVVNDPNGRIILYYVVGSELLGMFIIWWL 290

Query: 183 IN 184
           + 
Sbjct: 291 MR 292


>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 331

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 120/181 (66%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR   F   F +ALD++VR +R+GLP+ + +A+I  +  DPV +EFR++ E   +GL+L 
Sbjct: 151 KRLKAFTAQFADALDVVVRGIRSGLPLGECIAIIGREMPDPVGAEFRQITEGTRIGLTLH 210

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+++R V  MP+ E+ +F+ V+++Q Q GGNL+E LA LS +LR RK M+ KV + + EA
Sbjct: 211 EAMTRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEA 270

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +ASA IIGSLP  V  ++   +P Y+ VL     G++LL +       G+MVMR MINFD
Sbjct: 271 RASAAIIGSLPLLVVAMLGMLAPQYIGVLFTTEPGNLLLAIGILTEAAGVMVMRGMINFD 330

Query: 187 V 187
           +
Sbjct: 331 I 331


>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 295

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
           splendidus LGP32]
 gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
           splendidus LGP32]
          Length = 306

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++  +
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301

Query: 183 IN 184
           + 
Sbjct: 302 MK 303


>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
 gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
          Length = 301

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 97/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L  +R  +F   FP+AL++++ +V AG  +  AV+ +     + V  EF+ + +   L
Sbjct: 115 QWLSNRRRVQFQQTFPDALNVLMSAVTAGESLMQAVSFVGQNLDNEVGREFKNMGDRLKL 174

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  + + R  +  P  E  FF+  I      GG L   LA L R+L D + M+ K  A
Sbjct: 175 GESPDQVLQRAAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMA 234

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA ++ ++P   + ++Y  +P  +N +++DP+G  +L       L+G+ ++ L
Sbjct: 235 MTSEARISAKVVAAIPVIFAVILYNVNPDNINYILHDPKGVWVLYYVVGSELVGLFIVWL 294

Query: 182 MIN 184
           ++ 
Sbjct: 295 LVK 297


>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
 gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio sp. MED222]
          Length = 306

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           HL K+   +F + FP+AL+++  S+ AG  +   +  +  +    V  EF+ + E  +LG
Sbjct: 122 HLQKREKKRFEETFPDALNMLASSLSAGESIGRGIGYVGKKLEGEVGKEFKLMSERLNLG 181

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + +   +  R  P     FF   +    Q GG L E ++ L+R + + + ++ K  AL
Sbjct: 182 EPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVERKKFAL 241

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+G+ PF    ++ F SP     +++ P G  +L        IG++++  +
Sbjct: 242 TSEARISAKIVGATPFFFLFILQFLSPENFEFVMHHPEGRPILYYLITSESIGMLIIWAL 301

Query: 183 IN 184
           + 
Sbjct: 302 MK 303


>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
 gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
          Length = 306

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M  L +++  +F   FP+AL+++  +V +G  +  ++  +       V  EF+R+ E   
Sbjct: 120 MSWLEQRQQKEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGSVGEEFKRMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S      +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  
Sbjct: 180 LGESPDSVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP   + ++N P+G  +L        IGI ++ 
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFILQYLSPENYDFVMNHPKGQPILYYMLISEAIGIGIIW 299

Query: 181 LMIN 184
            ++ 
Sbjct: 300 SLMK 303


>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
 gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
          Length = 322

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 101/187 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR A   +  P+A++++VRS+R G P S A+ ++  +  DP+ +EF  + +   
Sbjct: 136 ISMKASKRMALLEEQLPDAIELMVRSLRVGHPFSSAIGIVATEVGDPLATEFGIIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + E++  M   + +Q++ F +  +++Q Q GGNL+E LA L++++R R  +  +V+
Sbjct: 196 YGRDMGEALKEMAERLDMQDLRFLAVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ EAK S   + + P      +    P Y +  +  P     + V   F+++ ++VMR
Sbjct: 256 AITAEAKWSGKFLSAFPLLALVGIQLLKPDYYDEAMEHPFFIPAVLVVGVFLVLNLIVMR 315

Query: 181 LMINFDV 187
            +++  V
Sbjct: 316 ALVSIKV 322


>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 335

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 101/177 (57%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F D  P  LD+I  S+R G  +  ++A +     +P R+E RRV +   LGLS+++++ 
Sbjct: 159 EFNDQLPETLDLITASMRGGFSLVQSLASVASDVQEPTRTELRRVFQEVQLGLSVTQALD 218

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +V+ M   ++    T I + +++GGNL + L N+S  +R+R  ++ +V+ ++   + S+
Sbjct: 219 NLVQRMESADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISS 278

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++IG+LPF ++ +++  +P YM  L        +   A    ++G +++R +++  +
Sbjct: 279 YVIGALPFALALIIFTINPTYMMRLFQPGLILCIPIGAFISSVVGFLIIRKIVDVRI 335


>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 309

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 92/183 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +R AKF     + + +++  +R G  V  +V     ++  P   E  R++    +G 
Sbjct: 126 LRDRRRAKFEGQLTDTIQMLIGGLRVGHSVLRSVEAAAQEADVPTSEELLRIVNETRIGK 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               +   +   M  ++  + S  I +  ++GG+L+E L  ++  +R+R  +K ++++LS
Sbjct: 186 DSRLAFEDVAERMDSEDFRWISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLS 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K SA+++ ++P  V+ ++ F + GY+NV +  P G ++L +A     +G   M  ++
Sbjct: 246 AEGKMSAYVLMAMPVGVAFILAFINSGYLNVFVEKPLGLVMLVMAIVMFTVGGFWMSRVV 305

Query: 184 NFD 186
              
Sbjct: 306 KIK 308


>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
 gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum 3TCK]
          Length = 302

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            LIKKR  +F   FP+AL+I++ +V AG  V  +++ +     + V   F+ + E   LG
Sbjct: 118 WLIKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDLFQDMGERLKLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A+
Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLDKKKSAM 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ SLPF    ++ F SP  +N ++ DP G  +L        +G+ ++ L+
Sbjct: 238 TSEARLSAKIVASLPFIFMVILSFISPQNLNYVLTDPNGRYVLYYVVGSETLGLFIIWLL 297

Query: 183 IN 184
           I 
Sbjct: 298 IR 299


>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 282

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 95/185 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++R  +  +  P+AL ++  S+RAG+  S A+ V+V     P+  E   V+  QH+G
Sbjct: 98  MLRRRRLDRIQEQLPDALQMLASSLRAGVGFSPAMEVLVQDGQPPLAQELALVLRQQHMG 157

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +   E++    + +P+ +   F + +++  ++GGNL+E LA L+  LR R  M+ KV+AL
Sbjct: 158 VRADEALESFSKRVPIVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKAL 217

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + K    ++  LP  +   +       M  + +   G +++GV      +G  + + +
Sbjct: 218 TAQGKLQGIVMALLPVFLVGYLSLMYAETMAPMFHSWHGWLVIGVCVVMEYLGYRMCKKI 277

Query: 183 INFDV 187
           +  DV
Sbjct: 278 MTIDV 282


>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 1/183 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR  +   + P+AL  I  ++RAG  +S AV V+V     P+  EF  V++ Q LG+S
Sbjct: 104 RKKRRQQIESELPDALLFIASALRAGSALSVAVQVLVRDQQGPLGQEFGLVLKEQRLGVS 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ ++QAL+ 
Sbjct: 164 FDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTA 223

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +    ++   P  +  ++Y   P  M +L +   G  +L V    + +G  ++R ++ 
Sbjct: 224 QGRIQGLVMTLFPLLLMGVLYLMQPT-MGLLFSTKIGWAVLFVIGVMLFLGYAMIRKIVA 282

Query: 185 FDV 187
            D+
Sbjct: 283 IDI 285


>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
           damselae]
 gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
           damselae]
          Length = 306

 Score =  160 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 87/184 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K+   KF + FP+AL+I+  ++ +G  +  A+  +       V +EF  + E   
Sbjct: 120 ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKTLDGAVGNEFSLMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S      +     P     FF   +      GG L + ++ L+RI+ D + ++ K  
Sbjct: 180 LGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVMSRLNRIMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP     ++ +P G  +L        IGI ++ 
Sbjct: 240 ALTSEARISAKIVAAIPFIFLFMLQYLSPENYEFVMFNPGGRPILYYVIISESIGITIVW 299

Query: 181 LMIN 184
           L++ 
Sbjct: 300 LLMK 303


>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 325

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +
Sbjct: 139 LNRDTSKRMDKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMDGPLAKEFSLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KLIRIDM 325


>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
 gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
          Length = 295

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G    
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRIAIGEDPV 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 SVFEDSYDRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + LINDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLINDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 321

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R+ +  +  P ALD++ RS+RAG   + A  V+  +  +PV  EF R  E+Q LGL 
Sbjct: 138 RDRRSNRLSEQLPEALDMMARSLRAGHAFTSAFEVVATEMPEPVAVEFARAFESQRLGLP 197

Query: 65  LSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + ++I +M    P  +++  F+    +Q + GGNL+E L +++  +R R    +K+ AL+
Sbjct: 198 VEQAIVQMTERAPGNRDLRIFAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALT 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +AS  I+G LP  ++ ++   +P YM  L++DP GHM++  AA   L+G+  +  + 
Sbjct: 258 AEGRASGAILGMLPILMALVLRIMNPAYMGRLVSDPLGHMIMLFAALSWLVGVAWLYSLT 317

Query: 184 NFD 186
             D
Sbjct: 318 KVD 320


>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 325

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 98/181 (54%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  K  + FP+ALD++ R+++AG   SDAV ++  +   P+  EF  +    +      
Sbjct: 145 KRMDKIEESFPDALDVLRRALQAGYSFSDAVKLVTEEMEGPLAKEFSLMFANINYSKDTK 204

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++   +  +P      F++ + VQ + GGNL+E + NLSR++R R   + +V+ LS E 
Sbjct: 205 RALLSFIERVPSVSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEG 264

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + SAWI+  LPF +  ++Y  +PGY+  L     GH LL   A  M +G + +  +I  D
Sbjct: 265 RLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGHKLLMWGAIGMFVGGLWISKIIRID 324

Query: 187 V 187
           +
Sbjct: 325 M 325


>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
 gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
          Length = 329

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR  RAG+PVS+A  ++      P+  EF  V +   L
Sbjct: 143 RNAMAKHLKEFKQNLPQAIDSIVRIARAGVPVSNAFNLVAENLPGPLAKEFSLVDKWLRL 202

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L +++    + +PL E  FF  ++ +  + GG LS+ L  L+  LR+R+ +  K++A
Sbjct: 203 GVPLRQAMQDSAKRVPLNEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRA 262

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E +ASA I+ SL       +Y  SP     L+ND  G+ +L  A   +L+G+ +   
Sbjct: 263 KTSEVRASAVIVASLAPLSLAYMYLNSPKDFQFLLNDSTGNNVLFYAFGSVLLGLSITHF 322

Query: 182 MIN 184
           MI 
Sbjct: 323 MIK 325


>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 293

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 102/184 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + ++  P  LD  VRS++AG  ++DAV   +  S +P+RS   RV     
Sbjct: 108 LSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGGIDGSREPLRSTMTRVRRNVQ 167

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++
Sbjct: 168 LGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTSELMENLIKLIREREQGSRQLK 227

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A I+G+LP C+       +P Y+  +  D  G M+L +A A  ++G +V+ 
Sbjct: 228 AMTGETRITAMILGALPLCMVGYFLMANPHYLLTMWQDSSGQMMLLLAFALQVVGCLVLW 287

Query: 181 LMIN 184
            M+ 
Sbjct: 288 RMMR 291


>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
 gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
 gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
          Length = 300

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 94/183 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++L+ +R   F + FP+AL+I++ +V AG  +  A++ +     + +  EF+ + +   L
Sbjct: 114 RYLVTRRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGDVMDNSIGREFKLMGDRLKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  +      GG L   LA L R+L D + ++ K  A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+ ++P     ++ + +P  +N ++ DP G ++L         G+ ++ L
Sbjct: 234 MTSEARISAKIVAAIPLIFMIILNYVNPDNVNFVLYDPSGRLVLFYVLGSEFFGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVR 296


>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 322

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR +   +  P+A++++VRS+R G P   ++  +  + SDP+ SE   + +   
Sbjct: 136 VSRTAKKRLSLLEEQLPDAVELMVRSLRVGHPFVASINTVSREMSDPIASELGVIADEAA 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ESI  M   + +Q++ F +  + +Q   GGNL+E LA L+ ++R R  +  KV+
Sbjct: 196 YGRDVAESIRAMADRLDIQDLRFLAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVR 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ EA+ S   +   P      +    P Y + +I+ P         A  + +  ++MR
Sbjct: 256 VITAEARGSGNFLSVFPILALVGINVMQPDYYSEVIDTPVFIPAAAGVAVALGLNWVIMR 315

Query: 181 LMINFDV 187
           +++N  V
Sbjct: 316 VLVNIKV 322


>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
 gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
          Length = 319

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 115/184 (62%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +RT +FLD  P+A+D++VR+ RAG+PVS+A+     ++ +PVRSEFRRV +   
Sbjct: 133 LGMLTHRRTIRFLDRLPDAIDLVVRASRAGVPVSEAIIAAGRETEEPVRSEFRRVADQVS 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L +++ +    + L +  FF   + VQ + GG L+E L NLS ILR RK+M+ KV+
Sbjct: 193 IGVDLKDALRQSSARVRLPDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVK 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E + SA I+ SLPF    L++   P Y+  L  DP GH LL  AAA + +G+ V+ 
Sbjct: 253 ALTAEGRMSANIVASLPFVSGGLIFAVDPTYVLNLFTDPLGHKLLAAAAACLGLGMFVIG 312

Query: 181 LMIN 184
            M  
Sbjct: 313 RMTR 316


>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 319

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +R     D  P   D++ R++ +G  +S A  ++  Q   P+  EF+   + Q+LG
Sbjct: 138 QRRNQRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGGPIAKEFQHCCQQQNLG 197

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L    ++  + R   + E+  F+  + VQ Q GG+ S+ L NL+  +R+R  +  KV+A+
Sbjct: 198 LPYEITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIKLAMKVKAI 257

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +A AW++ +LPF     +Y     Y +VL+  P    ++ + A  + +GI  +R +
Sbjct: 258 TSEGRAQAWVLSALPFVSFGGIYLLDRDYASVLLERPN---VMAIMAVSIALGIAWIRQI 314

Query: 183 INFD 186
           +  +
Sbjct: 315 VCIE 318


>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 325

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 285

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 1/183 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            KKR  +   + P+AL  I  ++RAG  +S A+ V+V     P+  EF  V++ Q LG+S
Sbjct: 104 RKKRRQQIESELPDALLFIASALRAGSALSVAIQVLVRDQVGPLGQEFGLVLKEQRLGVS 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++I +M + + + +       + V  ++GGNLSE L  L+  LR +  ++ +++AL+ 
Sbjct: 164 FDDAIQKMSQRLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTA 223

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +    ++   P  +  ++Y   P  M++L     G ++L V A  +++G  ++R ++ 
Sbjct: 224 QGRIQGLVMTLFPLLLMGVLYLMQPT-MSLLFTTTIGWVVLTVIAIMLMLGYAMIRKIVA 282

Query: 185 FDV 187
            D+
Sbjct: 283 IDI 285


>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 325

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 325

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR  K  + FP+ALD++ R+++AG   SDA+ ++  +   P+  EF  +    +
Sbjct: 139 LNRDTAKRMEKIEESFPDALDVLRRALQAGYSFSDAIKLVTEEMEGPLAKEFSLMFANIN 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                  ++   +  +P      F++ + VQ + GGNL+E + NL+R++R R   + +V+
Sbjct: 199 YSKDTKRALLGFIERVPSVSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVR 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            LS E + SAWI+  LPF +  ++Y  +PGY+  L     G+ LL   A  M +G M + 
Sbjct: 259 TLSAEGRLSAWILILLPFVLFAVIYIQTPGYVGELTGTEEGNQLLIWGAIGMFVGGMWIS 318

Query: 181 LMINFDV 187
            +I  D+
Sbjct: 319 KLIRIDM 325


>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 325

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 118/185 (63%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + +++    + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GVDLKDVLTQASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRVTTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 325

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 116/185 (62%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+++   +FL+ FP+A+D+IVR+VRAG+PV+ A++ +   +++PVRS FR + ++  +
Sbjct: 138 RALVERFRLRFLEAFPDAIDLIVRAVRAGIPVTQAISTVGDSAAEPVRSTFRTMGDSLRV 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L + ++     + + + SFF+  + +Q + GG+L E L  LS I+R R++++ K +A
Sbjct: 198 GADLKDVLTHASDRLMIADFSFFTVYLLLQRETGGSLGETLDELSSIIRTRRDIRLKTRA 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E + +  II ++PF +   ++  +  Y+ +L +   GH++L +AA  + IG++ +  
Sbjct: 258 LTAEGRITTKIISAVPFVMIGALFLVNRSYVMLLFDTHAGHVMLTIAAVLLTIGLLTINK 317

Query: 182 MINFD 186
           +   D
Sbjct: 318 ISKLD 322


>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
 gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
          Length = 292

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 100/184 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +++  + ++  P  LD  VRS++AG  +SDAV   V  + +P+RS   RV     
Sbjct: 107 LSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATREPLRSAMLRVRRNVQ 166

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L +++S +       E+  F+  + +  + GGN SE + NL +++R+ +    +++
Sbjct: 167 LGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQGDRQLR 226

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +AWI+G+LP  +     F +PGY+  +  D  G M+L  A A   +G +V+ 
Sbjct: 227 AMTGETRITAWILGALPLGMVGYFLFANPGYLMAMWRDSHGQMMLLFAFALQAVGCLVLW 286

Query: 181 LMIN 184
            M+ 
Sbjct: 287 RMMR 290


>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 275

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 90/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R        P+ L +I   +RAG     A+   V +S  P+  EF  ++    
Sbjct: 89  LSWMRTRRIETLERQLPDMLLMIAGGLRAGASFPIALESAVQESVPPISQEFDLLLREIR 148

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L  ++  + + +P+ +    +  + +  ++GGNL++AL +++  LRD+  M+ K++
Sbjct: 149 LGIDLDVAMRNIEQRIPVPDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIR 208

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +    ++  LP  +  ++    P  M  L   P G   L V AA  L+G   + 
Sbjct: 209 ALTSQGRMQGIVMTCLPLFLMMVLRAMEPVAMAPLFTSPIGWATLAVVAAMELLGYASIA 268

Query: 181 LMINFDV 187
            ++  +V
Sbjct: 269 RIVRINV 275


>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
 gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L K+   +F D FP+AL+++  +V +G  +  A+  +       V  EF+R+ E   LG
Sbjct: 118 WLGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGKVGKEFKRMGEQLQLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S      +     P     FF   +    + GG L E +  L+R++   ++++ K  AL
Sbjct: 178 ESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEKKKYAL 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ S+PF    ++ + SP     ++ +P G  +L        IGI+ + L+
Sbjct: 238 TSEARTSAKIVASIPFIFLFMLQYLSPENYEYVMFNPDGRPILYYVLISESIGILTIWLL 297

Query: 183 IN 184
           + 
Sbjct: 298 MK 299


>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
 gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 295

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 75/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +  + + +  A+       +  +  EF+ +     +G   +
Sbjct: 115 RNKKTFNAMFPEVIQILNAAATSSVGLLQALERCGKDLTGQLGQEFKSIHRRLSIGEDPA 174

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T+I      GG + E ++ L R++ D   M+ K +A++ EA
Sbjct: 175 TVFDDSYDRYPYKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEA 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+   P      + F  P   + L+NDP G  +L       L G+ ++  ++ 
Sbjct: 235 RMSAIIVACFPVGFFFFMQFAMPENFDFLVNDPTGRYVLYYVFGSELFGMGIIWWLMR 292


>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
          Length = 337

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G + + 
Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331

Query: 181 LMINFD 186
            M    
Sbjct: 332 RMARLR 337


>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
           HTCC2654]
          Length = 316

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 95/181 (52%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR        P+ALD++ R +  G P++  +  +     DP+ +EFR + +    G SL+
Sbjct: 136 KRADALTRQLPDALDLMKRGLSVGHPLNVTIRNVATTLPDPIAAEFRILADQVAYGDSLT 195

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + R + +++  + S  + +Q   GGNL   L  L+R++R R  M+ +V A+S E 
Sbjct: 196 DAVDDLARRIDIEDFHYLSAAVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEG 255

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + +A I+ ++P  +      T+P Y   + +DP    + G   A +L   +++R +++F 
Sbjct: 256 RITAIILSAMPVLMYVGTSLTAPEYYASVKDDPAFWPMCGAILALVLGNALMLRKLVSFR 315

Query: 187 V 187
           V
Sbjct: 316 V 316


>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
 gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
          Length = 337

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 152 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 212 GGVEIDRAMLHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  +++ V  T+P Y++ + NDP G MLL +A    L G + + 
Sbjct: 272 AMSAETRLSAFVLVMLPIAIASFVIMTNPQYLHGMWNDPSGQMLLVIAFLLQLFGSIWLY 331

Query: 181 LMINFD 186
            M    
Sbjct: 332 RMARLR 337


>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 199

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 80/180 (44%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++    F + FP  + ++  +  +G+ +  A+       + P+  EF  + +    G  
Sbjct: 17  QRRNRKLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDITGPIGEEFTIIYKRLARGED 76

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +           P +E  FF ++I      GG + E ++ L R + D   M+ K +A++ 
Sbjct: 77  VMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTS 136

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ SA I+   P      +  T+P   + ++NDP G ++L       L+G+ ++  ++ 
Sbjct: 137 EARMSAAIVACFPVGFFLFMKVTTPENFDFVVNDPAGRIILYYVVGSELLGMFIIWWLMR 196


>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 326

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
 gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
          Length = 308

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 95/184 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            +  ++  +F   FP  ++ I R+V AG+ V  A+A +       +  EF  + +   +G
Sbjct: 123 FIRAQQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGLLAHEFSLLRDRLEIG 182

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +SL +++ +    +P     FFS  + +  + GG L E L +LSR L +   +K K+++L
Sbjct: 183 ISLKQALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKMKIKSL 242

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A ++  LP C+ +++YF SP    VL + P G+ +L      M +G+ ++ ++
Sbjct: 243 TAEPRMTALVLACLPLCLISVMYFKSPASFAVLTDTPTGNDVLMYVIGSMALGLGIINVL 302

Query: 183 INFD 186
               
Sbjct: 303 TKVR 306


>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 304

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K++  ++   F+++FP+AL+I+  ++ +G  +  A   +  Q ++ V  EF+ + E   +
Sbjct: 119 KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQLNNDVGKEFKIISERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  + + R     P  E  FF + I +    GG L + +  ++R++ + ++++ K  +
Sbjct: 179 GENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEKKKNS 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ E++ SA I+G LP     ++ F SP   + ++    G  +         IG  ++  
Sbjct: 239 LTAESRMSAKILGVLPIGFLFVLKFISPEDFDFVMFQEEGRPIFYYLICSEFIGFFIIWR 298

Query: 182 MIN 184
           +I 
Sbjct: 299 IIK 301


>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
 gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
          Length = 535

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+L ++R  K  +   ++L ++  S++AG+ +  A  ++      P+  EF  VI+   
Sbjct: 349 LKNLKRRRGTKINNQLMDSLILLSNSLKAGMDIVQAFEMVSKDMKPPIADEFGLVIKNYQ 408

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  +++  M   +  + +S+    I +Q Q+GGNL++    +   +R+   ++ K+Q
Sbjct: 409 LGSSFEQALEMMEDRVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQ 468

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ + +  + ++G +P+ + ++++   P  M        G ++L     ++L+G+ ++ 
Sbjct: 469 AMTAQQRIQSIVVGIMPWLMISVMFLFRPDAMINFYTSGIGLIVLFFCIFWILMGMKMVS 528

Query: 181 LMINFDV 187
            +    V
Sbjct: 529 KLGEIKV 535


>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 300

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L+ KR   F + FP+AL+I++ +V AG  +  A+  +     + +  EF+R+ +   L
Sbjct: 114 RSLVTKRRRDFENTFPDALNILMSAVSAGDSLMQAIIYVGDVMDNAIGREFKRMGDRFKL 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S    + R  +  P  E  FF+  I      GG L   LA L R+L + + ++ K  A
Sbjct: 174 GESPDVILHRACKTYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMA 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ SA I+  +P     L+ + +P  ++ +++DP G  LL        +G+ ++ L
Sbjct: 234 MTSEARISAKIVAMIPVIFMLLLNYINPENIDFILHDPSGRGLLYYVVGSEFLGLFIVWL 293

Query: 182 MIN 184
           ++ 
Sbjct: 294 LVK 296


>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
 gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 314

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR   LL        IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313


>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
          Length = 293

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR  +F    FP +L +I  +  +G  ++  +     + S P+  EF  V    ++
Sbjct: 108 RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 167

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   
Sbjct: 168 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 227

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R 
Sbjct: 228 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 287

Query: 182 MI 183
           M+
Sbjct: 288 ML 289


>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 293

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR  +F    FP +L +I  +  +G  ++  +     + S P+  EF  V    ++
Sbjct: 108 RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 167

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S         R     E  F  T+I +  Q GG L E  + LS ++   K  + K   
Sbjct: 168 GESPESVFYDSYRRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 227

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R 
Sbjct: 228 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 287

Query: 182 MI 183
           M+
Sbjct: 288 ML 289


>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 326

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPDDFSFLFSDPVGTSVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 326

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 97/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLAGPLANEFKTIDHWLKL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+  L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAMLFPGCLAYLYMKSPDDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 326

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LR+R+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMSEYRFFVVILIINQEAGGRLGETLERLSATLRERRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G+++  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTTVLIYALCSVSVGMLITHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
 gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
           profundum SS9]
          Length = 302

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 90/182 (49%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L+KKR  +F   FP+AL+I++ +V AG  +  +++ +     + V + F+ + E   LG
Sbjct: 118 WLLKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAVFQDMGERLKLG 177

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               +   R  ++ P     FF   I      GG L   +A L R+L D + +  K  A+
Sbjct: 178 EPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSAM 237

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ SLPF     + F SP  +N ++ DP G  +L        +G+ ++ L+
Sbjct: 238 TSEARLSAKIVASLPFIFMVFLSFISPQNLNYVLTDPSGRYVLYYVVGSETLGLFIIWLL 297

Query: 183 IN 184
           I 
Sbjct: 298 IR 299


>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 317

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 1/188 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  K +   P+A+D IVRS++ G  V  A   +      P+ ++FR + E   
Sbjct: 130 LMIRRARREEKLVAQLPDAIDTIVRSLKVGQSVDAATLEVARGFPPPIGADFRAINEEMA 189

Query: 61  LGLSLSESISRMVRYMP-LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +GL     I    R  P L +V        +Q + GG L++ LA L+  +R R + + +V
Sbjct: 190 MGLPFETVIKNFQRRYPRLPDVRILCATFVIQRETGGKLTDILAGLASTIRARLHFQRRV 249

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A + E + +A+I+G LP   + + +   P YM V  + P G  LL V       G +VM
Sbjct: 250 RASTAEGRTTAFILGILPLGFAAVTWLLRPEYMRVFRDHPLGRKLLVVVILMEAAGFLVM 309

Query: 180 RLMINFDV 187
           R M+   V
Sbjct: 310 RAMLRVKV 317


>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 356

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M     +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 170 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQTTEAPLRECLDHVSRMLR 229

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 230 SGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 289

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++ 
Sbjct: 290 AMSSETRLSSWVLGMLPVGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 349

Query: 181 LMINFD 186
            +    
Sbjct: 350 RLARLK 355


>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
 gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
          Length = 294

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 75/180 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G  
Sbjct: 112 QHRNKKTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQLGEEFKSIHKRLSIGED 171

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                       P +E  FF T++      GG + E ++ L R++ D   M+ K +A++ 
Sbjct: 172 PMAVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEKKKKAMTS 231

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ SA I+  LP      + F  P     LINDP G  +L       L G+ ++  ++ 
Sbjct: 232 EARMSAMIVACLPVGFFFFMQFAMPENFEFLINDPSGRYVLYYVFGSELFGMGIIWWLMR 291


>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
 gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 326

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  ++K      +  P A+D I RS RAG+PV++  +++    + P+ +EF+ +     L
Sbjct: 141 RSTLQKHLKALRESLPEAIDAITRSCRAGVPVANTFSIVAEHLTGPLANEFKTIDHWLRL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L + I      +P+ E  FF  ++ +  + GG L E L  LS  LRDR+ ++ KVQ+
Sbjct: 201 GIPLRQVIQASATRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRDRRELQLKVQS 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + EA+ASA I+ +L       +Y  SP   + L +DP G  +L  A   + +G++V  +
Sbjct: 261 KTSEARASAKIVAALFPGCLAYLYMKSPEDFSFLFSDPVGTSVLIYALCSVSVGMLVTHV 320

Query: 182 MIN 184
           M+ 
Sbjct: 321 MVK 323


>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
 gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
          Length = 281

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 93/186 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K LIKKR  K +  FP+ L  +  ++++G  +  ++ +I   S  P+  EF   +    L
Sbjct: 95  KWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ES++ +++  P   +S F T++ V  + GGNL+  L  LS  +R+   +  K+ A
Sbjct: 155 GSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +++  +WI+  LP  +  ++   +P   N       G+  L +     + G + M+ 
Sbjct: 215 LTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMKK 274

Query: 182 MINFDV 187
           ++   V
Sbjct: 275 LMKIRV 280


>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
 gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
          Length = 294

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++    F   FP  + I+  +  +G  +  A+       +  +  EF+ + +   +G   
Sbjct: 113 RRNHKMFNAMFPEVIQILTAAASSGAGLLQALERCGKDLTGQLGDEFKNIHKRLAIGEDP 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
                      P +E  FF T+I      GG + E ++ L RI+ D K M+ K +A++ E
Sbjct: 173 VTVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ SA I+ S P      + FT P   + LINDP G  +L       LIG++++  ++ 
Sbjct: 233 ARMSAMIVASFPIAFFFFMQFTMPENFDFLINDPSGRYVLYYVFGSELIGMLIIWWLMR 291


>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
 gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
           20546]
          Length = 304

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 92/181 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++  KF ++FP+AL+I+  ++ +G  +  A   +  Q  + V +EF+ + E   +G 
Sbjct: 121 LKQRQEEKFKNNFPDALNILSGAISSGQSIVHAFEYVGKQLDNEVGNEFKFMAERLLIGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL+
Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + +  ++
Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWFIL 300

Query: 184 N 184
            
Sbjct: 301 R 301


>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
 gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
           kristensenii ATCC 33638]
          Length = 284

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 81/183 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+    F  DFP AL +I  +  +G  ++  +     + S P+ +EF  +    +
Sbjct: 98  LRLSRKRHHTLFKKDFPEALLMINMAASSGASINQVLERCGQEISGPLGNEFSLICRRLN 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S         +     E  F  T+  +  Q GG L E  + LS ++   K  + K  
Sbjct: 158 VGESPEAVFYDSYQRFKHPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKA 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+YF  P  +  + + P G M+        ++GI+++R
Sbjct: 218 VMTAQVRMSVNIISIMPIAFSFLLYFLDPTTIESMWDHPIGRMIYYYIITSEIVGIVLIR 277

Query: 181 LMI 183
            M+
Sbjct: 278 KML 280


>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 341

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 91/187 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 155 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLA 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L DRK  + +V+
Sbjct: 215 LGRSVDDALGELAERLPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVR 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      L+  ++ G +  +   P G +L+ ++     +G  V+R
Sbjct: 275 TMLSEVNATAFTVPLLGLGSLLLINSSNDGALARVTGSPLGQLLVLISIGLYTVGFFVIR 334

Query: 181 LMINFDV 187
            +   +V
Sbjct: 335 RLGKIEV 341


>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
 gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
          Length = 306

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  ++  +F   FP+AL+++  +V +G  +  ++  +       V  EF+R+ E   
Sbjct: 120 LTILESRQQKEFEMAFPDALNMLASAVSSGESLMHSIIFVGKSLEGSVGEEFKRMGERLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S      +     P +   FF   +    Q GG L + +  L+R++ D + ++ K  
Sbjct: 180 MGESPDTVFRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+ ++PF    ++ + SP   + ++N P+G  +L        IGI ++ 
Sbjct: 240 ALTSEARTSAKIVAAIPFFFLFMLQYLSPENYDFVMNHPKGQPILYYMLISEAIGISIVW 299

Query: 181 LMIN 184
            ++ 
Sbjct: 300 GLMR 303


>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
 gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
           intermedia ATCC 29909]
          Length = 293

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 75/173 (43%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F  DFP  L +I  +  +G  ++  +     +   P+  E   +    ++G S       
Sbjct: 118 FKRDFPEVLLMINMAASSGTSINQVLERCGKEVGGPLGDELSLICRRLNVGESPETVFYD 177

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +     E  F  T+I +  Q GG L E  + LS+++   K  + K   ++ + + S  
Sbjct: 178 AYQRFHYPEFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQTRMSVN 237

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           I+  +PF  S  +YF  P  +  + N P G ++     +  +IGI ++R M+ 
Sbjct: 238 ILSIIPFVFSLFLYFMDPTAIESMWNHPTGRIIYYYIISSEIIGIALIRSMLR 290


>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 314

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P    +I R+VR+G  V+ A+ +I      P+R EF    E Q LG+    
Sbjct: 138 RNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPSPIREEFALCYEQQELGMWREL 197

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +  ++     + E+  F   + VQ++ GG+L E L NLS+++  R  ++ +++AL+ E +
Sbjct: 198 AFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGR 257

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             A ++  LPF     +   SP Y   L+  PR   LL        IG +++R ++NF+
Sbjct: 258 MQALVLVVLPFVALGAIVLFSPEYAETLLERPR---LLVATGVSQGIGALLIRRIVNFE 313


>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 327

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 98/183 (53%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++ + K   +F  + P A+D IVR V+AG+P ++A  +I      P+  E   + +   L
Sbjct: 141 RNAMGKHLKEFKQNLPQAIDSIVRVVKAGVPATNAFGLIANNLPGPLAKELALIDKWLSL 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GLSL +++      +PL E  FF+ ++ +  + GG LS+ L  LS  LR+R+ +  K++A
Sbjct: 201 GLSLRQAMQDSAIRVPLNEYRFFAVILVINQEAGGRLSDTLERLSETLRERQELALKIRA 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E +ASA I+  L       +YF SP     L++DP G+ +L  A   +L G+ +   
Sbjct: 261 KTSEVRASAVIVAMLAPLSLAYMYFNSPKDFQFLLSDPTGNSVLIYAFGSVLTGLAITHF 320

Query: 182 MIN 184
           MI 
Sbjct: 321 MIK 323


>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 317

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 108/179 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++  AK     P+AL +IVRS+R G+P+S A+ ++  ++  P   EFR + +   +G SL
Sbjct: 135 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKSL 194

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ E
Sbjct: 195 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 254

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 255 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 313


>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 281

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 100/187 (53%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  K+R  KF     +AL  +  + +AGL    A+  +  ++  P+  EF   ++   
Sbjct: 95  VKYYRKRRIKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAREALPPLSQEFGLFVKEVK 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  M + +   ++       ++  QLGGN++E    +S ++R+R  ++ K+ 
Sbjct: 155 LGVPLEEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKID 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + K   WI+ S+P  +  ++    P  M  +++   G++L+ V A   ++GI+++R
Sbjct: 215 ALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMDHMFGYVLVTVIAIMEILGILIIR 274

Query: 181 LMINFDV 187
            ++N D+
Sbjct: 275 RIVNIDI 281


>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 304

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 93/181 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++  KF  +FP+AL+I+  ++ +G  +  A   +  Q ++ V +EF+ + E   +G 
Sbjct: 121 LKQRQEEKFKTNFPDALNILSGAISSGQSIVHAFEYVGKQLNNEVGNEFKFMAERLLIGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  AL+
Sbjct: 181 DPDDVLERSATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ASA II  LP     ++ FTSP   + ++ +P G  +         IG + + L++
Sbjct: 241 SEARASAKIIACLPVIFLVILKFTSPENYSFVMFEPGGQPIFYYVLISEFIGFVCIWLIL 300

Query: 184 N 184
            
Sbjct: 301 R 301


>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 145 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALQTTEEPLRGCLDHVSRMLR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 205 TGVEIDRAMLHIAKIYRTKEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + NDP G MLL  A    L G + + 
Sbjct: 265 AMSAETRLSAFVLMMLPIAIGSFVVMTNPKYLQGMWNDPSGRMLLTFAFLAQLAGSVWLY 324

Query: 181 LMINFD 186
            M    
Sbjct: 325 RMARLR 330


>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 356

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 170 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 229

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 230 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 289

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++ 
Sbjct: 290 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 349

Query: 181 LMINFD 186
            + N  
Sbjct: 350 RLANLR 355


>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 293

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 79/180 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++   +F + FP  + I+  +  +G  +  A+       S  +  EF  + +   +G  
Sbjct: 111 QRRNRKEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQIGEEFTAIHKRLAIGED 170

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +          P +E  FF T+I V    GG + E +  L R++ D K M+ K  A++ 
Sbjct: 171 ANSVFEDSYSRYPYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKMEKKKSAMTS 230

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           EA+ SA I+ S P      + F  P     L+NDP G M+L        +G+ ++  ++ 
Sbjct: 231 EARMSAMIVASFPVAFFIFMKFMMPENFEFLLNDPGGRMILYYVLGSESLGMGIIWWLMR 290


>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
 gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
           [Burkholderia xenovorans LB400]
          Length = 359

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 173 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 232

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++     ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 233 TGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 292

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A A  L G  ++ 
Sbjct: 293 AMSAETRLSSWVLAMLPVGIGGFLILSNPKYFASMWFDPTGRQLVYLAFALQLGGAYLLY 352

Query: 181 LMINFD 186
            + N  
Sbjct: 353 RLANLR 358


>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
           C54]
          Length = 281

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 92/176 (52%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL ++  ++RAG+ +  A+  +V Q   P+  EF  ++  Q LG+   E+++R
Sbjct: 106 FEQQLPMALLMLASALRAGVALMPALRQVVAQGGAPLAQEFGLMLREQRLGVPWDEALAR 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   M  +  +     +    Q GGNL+EAL ++++ L  R  ++A+++ L+ + +  AW
Sbjct: 166 LNTRMTAESTTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+G+LP  +   +    P  M  L + P G  +L V       G++++R ++  D+
Sbjct: 226 IVGALPVLLLIALDRLEPDIMMPLWHTPAGWTVLAVLGGLETAGVLLIRRIVRIDI 281


>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
 gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
          Length = 305

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L ++   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG
Sbjct: 121 WLQEREKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL
Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++  +
Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHTEGRPILYYVLISEAIGMLIIWGL 300

Query: 183 IN 184
           + 
Sbjct: 301 LK 302


>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 289

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 94/184 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R        P+AL +I   +RAG+ ++ A+  +V +   P+  EF   +    LG+
Sbjct: 106 LRQRRLDLIEQQLPDALQVIAGGLRAGVSMTVALQQLVREGRPPIAQEFDLTLREHRLGI 165

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++  +   + +  ++     + + ++ GG+L+EAL   +  +R +  M+ K+ AL+
Sbjct: 166 PLDEALDHLAARVRMPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALT 225

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + K  A ++G LP  +  ++    P  M  L + P G   L V A   ++G++++R ++
Sbjct: 226 AQGKLQAVVVGMLPLALLLVLDRMEPEAMGFLWHSPPGWATLAVIATLEVLGVLLIRRIV 285

Query: 184 NFDV 187
             DV
Sbjct: 286 AIDV 289


>gi|156975615|ref|YP_001446522.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
 gi|156527209|gb|ABU72295.1| hypothetical protein VIBHAR_03348 [Vibrio harveyi ATCC BAA-1116]
          Length = 301

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 94/182 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR   F   FP+AL+I++ +V AG  +  A + +       V  EF+ + +   LG
Sbjct: 116 WLQNKRRLDFEKKFPDALNILMSAVTAGESLMHAFSFVGENMEGEVGREFKEMGDRLKLG 175

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +  + + R  +  P  E  FF+  I      GG L   LA L RIL D + +++K  A+
Sbjct: 176 ENAEKVLLRSCKAFPYPEYIFFTITIRANINRGGQLKNVLARLIRILVDARTLESKRMAM 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA ++ ++P   + +V    P +++ ++NDP+G M+L       ++G+ V+ L+
Sbjct: 236 TSEARISAKVVAAIPIAFAFMVNQIDPSHIDFILNDPQGRMVLYYVVGSEVLGLFVVWLL 295

Query: 183 IN 184
           + 
Sbjct: 296 VK 297


>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
 gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 98/178 (55%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R    L+ FP+AL  IVR VR G+PV +A+ V+      P   EF R+ +   +G  L 
Sbjct: 138 RRATALLNQFPDALATIVRCVRVGIPVQEALRVVSQDMPAPTSREFGRIADQVAIGTPLE 197

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +M     L E  FF+T IS+Q++ GG L++ L  L+ ++R R  MKA+  AL+ EA
Sbjct: 198 LALRQMADRAHLAEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEA 257

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA I+G +P   +  +    P Y+ VL     G+++L  A   +  G +VMR +I 
Sbjct: 258 RTSALILGIIPLVAALAIEVIQPAYLRVLFVTHGGNIVLAAAVGLLAGGALVMREIIR 315


>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 296

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 90/187 (48%), Gaps = 4/187 (2%)

Query: 3   HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +L  +R     KF +    A+ +I  ++RAG  V+ A+  +    SDP++SEFRR+    
Sbjct: 109 YLKVRRDSGKKKFEEQLGQAMPLIASNLRAGSSVAQAIGPVAENMSDPIKSEFRRLTSDI 168

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  + E++ ++      +++  F+T + +  Q GG+L++   N+ + +R R   +  +
Sbjct: 169 RAGTPVPEALDKVADRTGSRDLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAI 228

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++ +   +  + I+  LP  +   +   SP +     + P G  L+ +A     +  ++M
Sbjct: 229 RSKTSLNRIESQIMVGLPVFMMAALLAISPSH-REFYSQPSGWALIALAVVLDTLAYLMM 287

Query: 180 RLMINFD 186
           R M +  
Sbjct: 288 RKMGDVK 294


>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
 gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio fischeri ES114]
          Length = 305

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 87/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L +K   +F + FP+AL+++  +V AG  ++ A+A +  +    V  EF+ + E   LG
Sbjct: 121 WLQEKEKKQFNERFPDALNMLSSAVSAGESITHAIAFVGKKLEGDVGKEFKIMGERLQLG 180

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S  E   +     P     FF   +      GG L + ++ L+R++ D + ++ K  AL
Sbjct: 181 ESPDEVFKKSCVRFPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYAL 240

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + EA+ SA I+ + PF    ++ F SP     ++    G  +L        IG++++  +
Sbjct: 241 TSEARISAKIVCATPFFFLFILQFLSPENYEFVMFHAEGRPILYYVLISEAIGMLIIWGL 300

Query: 183 IN 184
           + 
Sbjct: 301 LK 302


>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 316

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 90/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  +R   F    P+ L +    +RAG  +  A+     ++  P+  E  R++    
Sbjct: 130 LNMLTARRRKTFDAQVPDTLQMFSGGLRAGHSLLRAIDAAAQENQGPMAEELSRIVNETR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L ES++ + R    ++  + S  I +  ++GG+L+E L ++   +RDR  +K +V+
Sbjct: 190 IGRDLGESMADVSRRTASEDFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SA ++ +LP  +   +   +P Y  V      G ++L  A A + +G + + 
Sbjct: 250 ALSAEGRISAMVLMALPILMFIGLVTFNPTYARVFTTTFIGFVMLAAAVALLAVGGLWLS 309

Query: 181 LMIN 184
            +I 
Sbjct: 310 RIIK 313


>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 280

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR  +F    FP +L +I  +  +G  ++  +     + S P+  EF  V    ++
Sbjct: 95  RLSRKRYHRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGIEFNLVCRRLNV 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   
Sbjct: 155 GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ + + S  II  +P   S L+YF  P  +  + + P G ++        LIG++V+R 
Sbjct: 215 MTAQIRMSVNIISIMPIAFSLLLYFLDPITIESMWHHPIGKIVYYYIITSELIGMIVIRK 274

Query: 182 MI 183
           M+
Sbjct: 275 ML 276


>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
          Length = 258

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 83/186 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 73  LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 132

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 133 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 192

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 193 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 252

Query: 181 LMINFD 186
            +    
Sbjct: 253 RLARLR 258


>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
          Length = 268

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 83/186 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 83  LASRTQKRRLQIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLR 142

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 143 SGVEIDRAMVYIAELYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELA 202

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 203 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQVAGGYWLY 262

Query: 181 LMINFD 186
            +    
Sbjct: 263 RLARLR 268


>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 342

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + +   P  LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 156 LTMRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAALQTTEAPLRECLDYVSRMLR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S++ +   ++E+     V+ +  + GG     L  ++  +RD ++ + ++ 
Sbjct: 216 TGVEIDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAERELV 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++  LP  +   +  ++P Y   +  DP G  L+ +A    ++G  ++ 
Sbjct: 276 AMSSETRLSSWVLAMLPIGIGGFLILSNPKYFASMWFDPTGRQLVYLAFVLQVLGAYLLY 335

Query: 181 LMINFD 186
            + N  
Sbjct: 336 RLANLR 341


>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
           pseudotuberculosis IP 31758]
          Length = 291

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI ++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGIFIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 319

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 108/179 (60%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++  AK     P+AL +IVRS+R G+P+S A+ ++  ++  P   EFR + +   +G +L
Sbjct: 137 RRYAAKLFQQLPDALGMIVRSLRVGIPLSRALIIVGQEAEYPTADEFRMISQDVAVGKNL 196

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +     LQE  FF+T++++Q+Q GG L++ LA+ + ++R R   + +  AL+ E
Sbjct: 197 GDTLHNLAERTGLQEYRFFATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASE 256

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+ S +++G +PF +  ++   +P YM V +    GHMLLGV+A  + +G   MR ++ 
Sbjct: 257 ARMSCYVLGGIPFAIGGIMSIINPDYMAVFLTTHMGHMLLGVSALMLGLGFGSMRFIMK 315


>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 322

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 79/183 (43%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 140 RIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGV 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++A+S
Sbjct: 200 EIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  + + V  T+P Y+  + ND  G  LL +A      G + +  M 
Sbjct: 260 SETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLYHMA 319

Query: 184 NFD 186
              
Sbjct: 320 KLR 322


>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 335

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 153 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 213 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 273 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 332

Query: 184 NFD 186
              
Sbjct: 333 RLR 335


>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 335

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 153 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 212

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 213 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 272

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 273 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 332

Query: 184 NFD 186
              
Sbjct: 333 RLR 335


>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 327

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 79/183 (43%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R    +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 145 RIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAALQTTEAPLRGCLDHVSRMLRTGV 204

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +      +E     +V+ +  + GG     L  +S  +RD +  + +++A+S
Sbjct: 205 EIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRADIMLDRMSTFMRDLEQAERELEAMS 264

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  + + V  T+P Y+  + ND  G  LL +A      G + +  M 
Sbjct: 265 SETRLSAWVLVMLPIAIGSFVIATNPLYLQSMWNDYTGRQLLVLAFMLQAAGGIWLYHMA 324

Query: 184 NFD 186
              
Sbjct: 325 KLR 327


>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 329

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 147 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 206

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 207 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 267 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 326

Query: 184 NFD 186
              
Sbjct: 327 RLR 329


>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 291

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 76/178 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +    F   FP  + I+  +   G  +  ++       +  +  EF+ + +   LG    
Sbjct: 111 RNQKMFNAMFPEVIQIMNAAATGGAGLLQSLERCGKDLTGQLGEEFKAIHKRLALGEDPM 170

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                     P +E  FF T+I      GG + E +  L R++ D K M+ K +A++ EA
Sbjct: 171 SVFEDSYSRYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEA 230

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SA+I+ S P      + F  P   + L+NDP G  +L         G++++  ++ 
Sbjct: 231 RMSAFIVASFPIAFFLFMQFAMPENFDFLLNDPSGRYVLYYVFGSEAFGMLIIWWLMR 288


>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 187

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MK   K+  + F  DFP  L +I  +  +G  ++  +     + S P+  E   +    +
Sbjct: 1   MKLSRKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEVSGPLGHELVLICRRLN 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S         +     E  F  T+I +  Q GG L E  + LS+++   K  + K  
Sbjct: 61  LGESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKS 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L+ + + S  II ++P   S L+YF     +  + ++P G M+         IGI V+R
Sbjct: 121 VLTAQTRMSVNIISAMPVAFSLLLYFIDAKNIESMWDNPIGRMIFFYIITSEAIGIYVIR 180

Query: 181 LMIN 184
            M+ 
Sbjct: 181 KMLR 184


>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
 gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 336

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 330

Query: 181 LMINFD 186
            +    
Sbjct: 331 RLARLR 336


>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 261

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 79/183 (43%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 79  RIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAALLTTEAPLRGCLDVVSRMLRTGV 138

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 139 EIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRADVMLERMAVFMRDLEQAERELVAMS 198

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  +   V  T+P Y++ + ND  G   L +A    + G   +  M 
Sbjct: 199 SETRLSAWVLVMLPIAIGGFVIATNPSYLSSMWNDDSGRAYLYLAFIMQIAGGAWLYRMS 258

Query: 184 NFD 186
              
Sbjct: 259 RLR 261


>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
 gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
          Length = 310

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 96/186 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  KKR     ++ P  +D++ RS  AG  +  A+A++  ++  P+  EFRR      
Sbjct: 124 LHYRRKKRMQTIQEELPEMIDLLARSTHAGASLEQAIAIVGEETKGPLSFEFRRCARQLD 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + LS+   +  +   + L ++   ++ + +  + GGNL   L  ++ ++RDR N + +++
Sbjct: 184 MNLSVPAVMKSLSSRIQLIDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMK 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A +   +ASA ++  +      ++    P +++ L  DP G++LL +A    +IGI+ + 
Sbjct: 244 ASTGAGRASALLMTVVAPVAFVVLLVAFPAHVSNLYTDPIGNILLLIAIVLEVIGILWVS 303

Query: 181 LMINFD 186
            ++  D
Sbjct: 304 TLLRTD 309


>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
 gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
          Length = 270

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 84  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 143

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 144 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 203

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 204 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 263

Query: 181 LMI 183
            M+
Sbjct: 264 KML 266


>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 223

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR  +F    FP +L +I  +  +G  ++  +     + S P+  EF  V    ++
Sbjct: 38  RLSRKRYYRFFKQNFPESLLMINMAASSGASINQILERCGQEISGPLGVEFNLVCRRLNV 97

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S         +     E  F  T+I +  Q GG L E  + LS ++   K  + K   
Sbjct: 98  GESPESVFYDSYQRFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAV 157

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ + + S  II  +P   S L+YF  P  +  + + P G ++    +   +IG++V+R 
Sbjct: 158 MTAQIRMSVNIISIMPIAFSLLLYFLDPTTIESMWHHPIGKIVYYYISISEIIGMIVIRK 217

Query: 182 MI 183
           M+
Sbjct: 218 ML 219


>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 311

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F+   P    ++  +  AGL +  ++A+   +   P   E R V +   
Sbjct: 125 LNWHRTKRTEAFISQLPEISRVLANATHAGLSLRTSIAMAADELESPAGDELRVVADQLG 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +L +++  +   +P +E+    + + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 185 VGRTLDDALGELAERLPSRELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVR 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +  A+A+ + ++      LV    PG ++ +     G + + V+     +G + +R
Sbjct: 245 TQLSQINATAYAVPAIGIGAMLLVNSILPGALDRMTGSVVGQIAVIVSLGLYALGFVAIR 304

Query: 181 LMINFDV 187
            +   D+
Sbjct: 305 RVSKIDI 311


>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
 gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
          Length = 304

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 89/183 (48%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L +++   F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 SKLKQRQMNSFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNDVGKEFKLMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 295

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 272

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 101/186 (54%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  +F    P AL ++  ++RAG+ ++  +  +V QS  P+  EF  ++  Q 
Sbjct: 86  VSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSGAPLAQEFGLMLREQR 145

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+    ++  +   MP    S     + + SQ GGNL+EAL ++++ LR R  ++AK+Q
Sbjct: 146 LGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRARLQLQAKLQ 205

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +  AWI+G+LP  +  ++    P  M +L + P G  +L +       G++++R
Sbjct: 206 ALTSQGRLQAWIVGALPLLLLAVLDQLEPDIMGLLWHTPIGWGVLAILVVLETAGVLLIR 265

Query: 181 LMINFD 186
            ++  +
Sbjct: 266 RIVRIE 271


>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
           10229]
 gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
 gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
          Length = 306

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 124 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 183

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 184 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 243

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 244 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 303

Query: 184 NFD 186
              
Sbjct: 304 RLR 306


>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 295

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLHMWNDGSGQIMLSMAFGLQVLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 293

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 88/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 115 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 174

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 175 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 234

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + +D  G ++L  A A    G +V+  M+ 
Sbjct: 235 MTAVVLALLPISMAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 291


>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 404

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 80/186 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M     +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V     
Sbjct: 218 MSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLRTTEAPLRECLDHVSRMLR 277

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD +  + ++ 
Sbjct: 278 SGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRADVMLDRMSSFMRDLEQAERELV 337

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++ 
Sbjct: 338 AMSSETRLSSWVLGMLPIGIGGFLILTNPRYFGSMWFDPGGRQILYLAFALQLTGAYLLY 397

Query: 181 LMINFD 186
            +    
Sbjct: 398 RLARLK 403


>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 312

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  A+++   +   P   E  +V     
Sbjct: 126 LNWQRQKRIERFINQLPELSRILANATQAGLALRTALSMAADEMEAPAGEELSKVSAKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 186 VGHSVDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      L+   SPG ++ +     G   +  A A   IG  ++R
Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRISPGSLDRMTASIWGQAAVIAAFALYGIGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
 gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
          Length = 304

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             L +++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 NKLKQRQMDRFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +  + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEAPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +        L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLVSELLGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 286

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 86/184 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R  + L   P  +D + R+ R G  +   + ++   +  P+  E  R +    
Sbjct: 98  LMTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVATDTPAPLGDEMERSVRKLQ 157

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++++E++  +     +  +   +T +SV  Q GG+L   L  L+R LRDR     +++
Sbjct: 158 MGVTMNEALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGRLR 217

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++  ++A+A ++  LP  +     F  P Y+  L+    G  +        ++G + + 
Sbjct: 218 AITAGSRATALLMILLPPAILVFFIFRDPDYLASLMASNWGRFITIAGVILEIVGAIWIL 277

Query: 181 LMIN 184
            ++N
Sbjct: 278 KILN 281


>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 294

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 88/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+ 
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292


>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           642]
          Length = 294

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 90/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+ 
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292


>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R  + ++  P  LD  VRS+++G  +SDAV   +  +  P++    R+     
Sbjct: 109 VSWRYRVRVRRMIEQLPQLLDHSVRSLKSGRTLSDAVLYGIAAADQPLKDGMSRIERNVQ 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL ++           E   F+  + V  + GGN SE + NL R++R+R+    +++
Sbjct: 169 LGVSLPDAARDFAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLR 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + ND  G ++L +A    L+G +++ 
Sbjct: 229 AMTGETRMTALVLGLLPVGMAGYFMVVNPDYLLHMWNDGSGRIMLSMAFGLQLLGCLMLW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLR 292


>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 294

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 88/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLQGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+ 
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292


>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
          Length = 261

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 76  LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 135

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 136 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 195

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 196 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 255

Query: 181 LMINFD 186
            +    
Sbjct: 256 RLARLR 261


>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 294

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 90/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+ 
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292


>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
 gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
 gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
 gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
 gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
 gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
           FV-1]
 gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
 gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
           Angola]
 gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
 gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
 gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
 gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
 gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
 gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 291

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
 gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
          Length = 304

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 91/183 (49%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +L  ++  +F  +FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+ + E   +
Sbjct: 119 NNLKARQVERFKTNFPDALNILSGAISSGQSIIHAFEYVGKQLDNEVGKEFKFMAERLLI 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    + + R     P  E  FF++ I +    GG L + +  ++R++ D + ++ K  A
Sbjct: 179 GEDPDDVLERSSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ EA+ASA II  LP     ++ FTSP   + ++ +  G  +     A  L+G   + L
Sbjct: 239 LTSEARASAKIIACLPVIFLIILKFTSPENYSFVMFEEAGQPIFYYVLASELVGFFCIWL 298

Query: 182 MIN 184
           ++ 
Sbjct: 299 ILR 301


>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 314

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  +  AGL +  A+ +   +   P   E   V     
Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATHAGLALRTAIGMAAEELEAPAGEELANVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + +++  M + +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGVPMEDALDEMAKRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A A   +G +++R
Sbjct: 248 TQLSQVNMTSYAVPVLGIGSLFLMNGVKDGALERMTGSPLGQGAVIIAFALYTVGFVLIR 307

Query: 181 LMINFDV 187
            M   DV
Sbjct: 308 RMSRIDV 314


>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
 gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 313

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 89/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F+   P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 127 LNWQRQKRIEAFIGQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELARVADQLT 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG++  +L NL++ L DRK  + +V+
Sbjct: 187 LGRSVDDALDELAERLPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ +  L      L+  ++ G +  +     G  L+ ++     +G  V+R
Sbjct: 247 TMLSEVNATAFTVPLLGLGSLLLINSSNEGALARVTGSSLGQGLILLSLGLYTVGFFVIR 306

Query: 181 LMINFDV 187
            +   +V
Sbjct: 307 RLGKIEV 313


>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 294

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 88/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+ 
Sbjct: 236 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 292


>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
 gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
           mollaretii ATCC 43969]
          Length = 279

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K     F  D P  + +I  +  +G  ++  +     + S P+  E   +    +
Sbjct: 93  LKISRKTHHTLFKRDLPEVILMINMAASSGASINQVLERCGNEISGPLGDELDLICRRLN 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S     +   +     E  F  T+I +  Q GG L E ++ LS+++   K  + K  
Sbjct: 153 LGESPEAVFNDAYQRFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKA 212

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   STL+YF  P  M  + N P G M+        +IGI ++R
Sbjct: 213 VMTAQTRMSVNIISLMPLVFSTLLYFLDPATMESMWNHPMGKMVFYYIILSEVIGITIIR 272

Query: 181 LMI 183
            M+
Sbjct: 273 TML 275


>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 294

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 87/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP   +      +P Y+  + +D  G ++L  A A    G +V+  M+ 
Sbjct: 236 MTAVVLALLPISTAGYFLAVNPNYLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 292


>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 330

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 145 LTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    QE     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 205 TGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  +  DP G MLL +A    + G + + 
Sbjct: 265 AMSAETRLSAFVLVMLPIGIGSFVVMTNPKYLEGMWIDPGGRMLLVLAFLLQIAGSVWLY 324

Query: 181 LMINFD 186
            M    
Sbjct: 325 RMARLR 330


>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 264

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 82  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 141

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 142 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 201

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 202 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 261

Query: 184 NFD 186
              
Sbjct: 262 RLR 264


>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 386

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 80/185 (43%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
                +R    +   P+ LD IVR +  G  V  A    +  +  P+R     V      
Sbjct: 201 SMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQASLQITEAPLRECLDHVSRMLRS 260

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ +  ++S +      +E+     V+ +  + GG     L  +S  +RD ++ + ++ A
Sbjct: 261 GVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRADVMLDRMSSFMRDLEHAERELVA 320

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +S E + S+W++G LP  +   +  T+P Y   +  DP G  +L +A A  L G  ++  
Sbjct: 321 MSSETRLSSWVLGMLPAGIGGFLILTNPRYFGAMWFDPGGRQILYIAFALQLTGAYLLYR 380

Query: 182 MINFD 186
           +    
Sbjct: 381 LARLK 385


>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 294

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 90/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+ 
Sbjct: 236 MTAVVLALLPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 292


>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 316

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 134 RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 193

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 194 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 253

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 254 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 313

Query: 184 NFD 186
              
Sbjct: 314 RLR 316


>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 312

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF+   P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 126 LNWQRQKRIEKFISQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVADKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+
Sbjct: 186 VGHSIDDALGELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      L+   + G ++ + +   G   + VA A   +G  ++R
Sbjct: 246 TQLSQVTVTAYVVPLMGIGTLLLMNRIATGSLDRMTSSFWGQAAVVVAFALYGVGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
          Length = 242

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 57  LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 117 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 176

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   + 
Sbjct: 177 AMSAETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLY 236

Query: 181 LMINFD 186
            +    
Sbjct: 237 RLARLR 242


>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 256

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 74  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 133

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 134 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 193

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 194 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 253

Query: 184 NFD 186
              
Sbjct: 254 RLR 256


>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 312

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 126 LGWQRQKRIERFINQLPELSRILANATQAGLALRTALGMAADEMEAPAGEELAKVAAKLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V+
Sbjct: 186 VGHSIDDALEELAERLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTQTLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  L      L+   + G ++ + +   G   + VA     IG  ++R
Sbjct: 246 TQLSQVTVTAYVVPLLGIGTLLLMNRIAAGSLDRMTSSFWGQAAVVVAFCLYGIGFFLIR 305

Query: 181 LMINFDV 187
            M   DV
Sbjct: 306 RMSKIDV 312


>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 314

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 89/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T +++ ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 LGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLGRIDV 314


>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
 gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
          Length = 304

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 89/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  KF D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    +
Sbjct: 125 REKKFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGKEFKKMSERLLIGEDPDD 184

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++R     P  E  FF++ I +    GG L   +  ++RI+ + + ++ K  AL+ EA+
Sbjct: 185 VLARSASTFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEAR 244

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +SA II +LP     ++  TSP     ++ +  G  +        LIG  ++ +++ 
Sbjct: 245 SSAKIIAALPVIFMCILKLTSPENYQFVMFEEGGKPIFYYVLISELIGFFLISMILR 301


>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 326

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 78/183 (42%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGV 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S
Sbjct: 204 DIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG   +  + 
Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDTGRQLVYLAFVLQAIGGFWLFRLA 323

Query: 184 NFD 186
              
Sbjct: 324 RLR 326


>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 291

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 78/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 105 LKYSRSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 165 LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  + + P G  ++       +IGI+++R
Sbjct: 225 VMTAQIRMSVNIISIMPILFSFLLYLLDPTTIEFVWHHPTGRFIIYYIIISEVIGILIIR 284

Query: 181 LMI 183
            M+
Sbjct: 285 KML 287


>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 295

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQILGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 314

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  +F++  P    I+  + +AGL +  AV +   +   P   E  +V     
Sbjct: 128 LNWQRQKRIERFINQLPELARILANATQAGLALRTAVGMAAEEMEAPAGEELAKVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G ++ +   P G   + +A     +G +++R
Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSPAGQAAVIIAFGLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 310

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 89/186 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F    P    ++  + +AGL +  A+ +   + +DP  +E R V E+  
Sbjct: 124 LNRQEEKRREAFTAQLPELARVLSNATQAGLALPTAIDMAADELADPAGAELRHVAESIK 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E+++ + + MP +E+    + + V ++ GG L  AL N+S  L +RK  + +V+
Sbjct: 184 VGQPFEEALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVR 243

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  ++AW +  +      L+    PG +  +     G ++LG A     IG +V+R
Sbjct: 244 TILSETTSTAWTLLLMGVGSLFLLNALMPGTVARMTESFAGLVVLGAALTLFTIGFVVIR 303

Query: 181 LMINFD 186
            M   D
Sbjct: 304 RMSRID 309


>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 326

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 79/183 (43%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V +    G+
Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSQMLRSGV 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S
Sbjct: 204 EIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  V + V  TSP Y   +  D  G  L+ +A A   IG   +  + 
Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWGDDNGRQLIYLAFALQAIGGFWLYRLA 323

Query: 184 NFD 186
              
Sbjct: 324 RLR 326


>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
          Length = 293

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 97/179 (54%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++     ++  P  LD  VRS++AG  ++DAV   +  S +P+R+   RV     LG+ L
Sbjct: 113 RRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGAIDSSREPLRTTLARVRRNVQLGVPL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++ +       E+  F+  + +  + GGN SE + NL +++R+R+    +++A++ E
Sbjct: 173 EDAMTELAELHQQDELRLFALGLRINQRHGGNASELMENLIKLIREREQGARQLKAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A I+G+LP  +       +P Y+  +  D  G ++L +A A  ++G +V+  M+ 
Sbjct: 233 TRITAIILGALPLAMVGYFLLANPHYLLAMWRDSSGQLMLLLAFALQVLGCLVLWRMMR 291


>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
 gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
          Length = 299

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 95/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L +KR  +F D+ P+ +D ++R++R G P+      I  Q        F ++++   +
Sbjct: 114 QQLQQKRMERFRDELPDIIDGLIRALRVGAPMLAVFQDIANQHQGVTSRLFHQIVDELRV 173

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G ++++ +    + MP+ E  F + V+S+Q + GG L+  L  L   LR R  + A +Q 
Sbjct: 174 GRTMADVMKLAAQRMPIAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQT 233

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++ +LP  V  +++ T   + N L+    G +++      +L G+ ++R 
Sbjct: 234 ITSESRNSAKVLAALPVLVMLVLFSTGREHFNFLMATTGGQIVMIYITISILFGLFLIRR 293

Query: 182 MINFD 186
           M    
Sbjct: 294 MTQLK 298


>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 326

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 78/183 (42%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSALQTAEMPLRRCLDDVSRMLRSGV 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E      V+ +  + GG     L  +S  +RD +  + ++ A+S
Sbjct: 204 DIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMS 263

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  V + V  TSP Y   + ND  G  L+ +A     IG   +  + 
Sbjct: 264 AETRLSAWVLALLPIAVGSFVIATSPRYFTAMWNDDAGRQLVYLAFVLQAIGGFWLFRLA 323

Query: 184 NFD 186
              
Sbjct: 324 RLR 326


>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
          Length = 217

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 77/183 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+   K    F  DFP  L +I  +  +G  ++  +     +   P+  E   +    +
Sbjct: 31  LKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRGPLGQELGLICRRLN 90

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +               E  F  T+I +  Q GG L E +  LS+I+  +K  + K  
Sbjct: 91  LGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKA 150

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ + + S  II  +P   S L+Y   P  +  +   P G  ++       +IGI+++R
Sbjct: 151 VMTAQIRMSVNIISIMPMLFSFLLYLLDPTTIEFVWQHPTGRFIIYYIIISEVIGILIIR 210

Query: 181 LMI 183
            M+
Sbjct: 211 KML 213


>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
          Length = 289

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 112 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 171

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 172 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 231

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 232 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 286


>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 295

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 95/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     
Sbjct: 110 VSWRYERRVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIELNVQ 169

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+SL +++          E   F+  + V  + GGN SE + NL +++RDR+    +++
Sbjct: 170 LGVSLPDAVRDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLR 229

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + +A ++G LP  ++      +P Y+  + +D  G ++L +A    ++G +++ 
Sbjct: 230 AMTGETRMTAIVLGLLPVSMAGYFLAVNPDYLLQMWSDDSGRIMLSMAFGLQMLGCLMLW 289

Query: 181 LMIN 184
            M+ 
Sbjct: 290 RMLR 293


>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 220

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 38  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 97

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 98  EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 157

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 158 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 217

Query: 184 NFD 186
              
Sbjct: 218 RLR 220


>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 314

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 128 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A     +G +++R
Sbjct: 248 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 211

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 29  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 88

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 89  EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 148

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 149 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 208

Query: 184 NFD 186
              
Sbjct: 209 RLR 211


>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
          Length = 313

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  AV +   +   P   E  +V     
Sbjct: 127 LSWQRQKRIEKFINQLPELARILANATQAGLALRTAVGMAAEELEAPAGEELGKVSHQLA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 187 LGASMDDALGELADRLPSRELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVR 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + VA A   +G +++R
Sbjct: 247 TQLSQVNMTSYAVPVLGIGALFLMNGVKDGALERMTGSPIGQGAVIVAFALYAVGFVLIR 306

Query: 181 LMINFDV 187
            +   DV
Sbjct: 307 RLSRIDV 313


>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 312

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 84/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V     
Sbjct: 126 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELSKVANQLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 186 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   + +A     +G +++R
Sbjct: 246 TQLSQVSMTSYAVPVLGVGSLFLMNGVKDGALERMTGSPVGQAAVIIAFGLYAVGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSRIDV 312


>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 215

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 33  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 92

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 93  EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 152

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 153 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 212

Query: 184 NFD 186
              
Sbjct: 213 RLR 215


>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
           27064]
 gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 313

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KRT  F+   P    ++  + +AGL +  A+A+   +  DP   E   V +   
Sbjct: 127 LEWQRVKRTEAFIAQLPELTRVLANATQAGLSLRTALAMAAEELDDPAGHELGIVADQLA 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL +++  +   +P +E+    T + + ++ GG +  +L NL++ L +RK  + +V 
Sbjct: 187 VGQSLDDALGTLAERLPSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVT 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               + K +A  +  L      ++   +PG ++ +     G      A     +G  ++R
Sbjct: 247 TTLSQIKVTALAVPLLGLGFLLMINGMTPGALDRMTGSVVGQGATLAAFGLYGLGAFLIR 306

Query: 181 LMINFDV 187
            +    V
Sbjct: 307 RLSRIQV 313


>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 216

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 34  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 93

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 94  EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 153

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 154 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 213

Query: 184 NFD 186
              
Sbjct: 214 RLR 216


>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 206

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 24  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 83

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 84  EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 143

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 144 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 203

Query: 184 NFD 186
              
Sbjct: 204 RLR 206


>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
 gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
          Length = 303

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 91/181 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G 
Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+
Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299

Query: 184 N 184
            
Sbjct: 300 R 300


>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
 gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
 gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
          Length = 303

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 91/181 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G 
Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+
Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299

Query: 184 N 184
            
Sbjct: 300 R 300


>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 321

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 87/186 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +      
Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + 
Sbjct: 192 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SAW++  LP  V  L+   +  Y   + +D  G  ++GVAAA  + G++++ 
Sbjct: 252 AMTAETRLSAWVLSLLPVAVCCLIISFNASYFLNMWDDASGRNIIGVAAALQVFGVVLLY 311

Query: 181 LMINFD 186
            +   D
Sbjct: 312 RLAKLD 317


>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
 gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrionales bacterium SWAT-3]
          Length = 302

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K +  +F     + L +I R+V AGL V  A+  +       +  EF  + +   LG
Sbjct: 115 YRRKLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGLLGREFSYIRDNLALG 174

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL +++      +P     +FS  + +    GG L + L  LSR + D + M+ KV++L
Sbjct: 175 LSLRDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAMRKKVKSL 234

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  +   + +  P   + LIN   G  +L    + +  G +++  +
Sbjct: 235 TSEPRMTALFLSLLPIGLIGSIAWIEPTMADRLINTESGQNVLIYVLSSICFGTLILNSL 294

Query: 183 IN 184
             
Sbjct: 295 TR 296


>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
 gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
          Length = 338

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 97/182 (53%), Gaps = 1/182 (0%)

Query: 4   LIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             ++R A +     P+A+ ++  +VR+GLPV +A   +  +   P   +F  V    +LG
Sbjct: 152 WQQRRVALQLFRQLPDAIQLVTSTVRSGLPVHEAFRALAREMPQPTAGQFAIVCNEVNLG 211

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              +E++  + R   + E + F+  ++VQ + GG+L+E L NL   +R R  + A+ +AL
Sbjct: 212 RPPAEAVEGVYRRTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKAL 271

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E   S+  +   P     ++Y ++P  +++L  DP G+ LL  A A +L+G +V+  M
Sbjct: 272 AGEVIFSSRALTISPLIGGGVLYASNPQTVDLLFTDPVGNKLLAYAVASVLVGALVISWM 331

Query: 183 IN 184
           + 
Sbjct: 332 VR 333


>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 81/184 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + ++   R  + L   P  L+ + R+   G  V   + ++   +  P+  E +  +    
Sbjct: 97  LMYVRSSRQNQILGQLPAMLEELARAATTGRSVEQCLQLVAADTPSPLGDELQLCVRRMQ 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + ++++ +     L  +  F   + V  Q GG+L   L  LS+ +RDR     +++
Sbjct: 157 MGMPMRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLR 216

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++  ++A+A ++  LP  V        P Y + L+    G     +A    +IG + + 
Sbjct: 217 AMTAASRATALLMVVLPPGVLIFFTLRDPDYFSKLMGSSWGRNGTIIAFTLTMIGTIWVL 276

Query: 181 LMIN 184
            ++ 
Sbjct: 277 RILR 280


>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
           MSMB43]
          Length = 221

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 39  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 98

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 99  EIDRAMVYVATLYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 158

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 159 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPMGRQLVYLAFILQVAGGYWLYRLA 218

Query: 184 NFD 186
              
Sbjct: 219 RLR 221


>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 319

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 104/184 (56%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K   +F+D FP+A+D + R +RAGLP++ AV  I  ++  P+ + F  + +   
Sbjct: 131 LVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAGAPISTVFAMIADELK 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ + +++    + + L +  FF+  +++Q   GGNL   L  LS+I+R R+ ++ K +
Sbjct: 191 IGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALRLKAK 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + +A+ +G +P   S  ++   PGY+  L  DPRG ++L  A   + +  + MR
Sbjct: 251 AATGEIRITAYALGGIPVLTSGALFVLQPGYLAPLWTDPRGPVILMAAGGLLFLAYLSMR 310

Query: 181 LMIN 184
           +++ 
Sbjct: 311 MIMR 314


>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
 gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
          Length = 303

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 91/181 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L   +TAKF  +FP+AL+I+  ++ AG  +  A   +  Q  + V  EF+ + E   +G 
Sbjct: 120 LRAHKTAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDNDVGYEFKFMAERLLIGE 179

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E ++R     P  E  FF++ I +    GG L E +  ++RI+ D + +  K  AL+
Sbjct: 180 DPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALT 239

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA++SA II +LP     ++ FTSP   N ++ +  G  +        LIG   + +++
Sbjct: 240 SEARSSAKIIAALPVIFLLILKFTSPENYNFVMFEEGGKPIFYYVVISELIGFFCIWMIL 299

Query: 184 N 184
            
Sbjct: 300 R 300


>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
           3_1_45B]
          Length = 326

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 83/175 (47%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +     P A+D I R  RAG+P   A  +        +  E R +     LG+ L + +
Sbjct: 149 EELGKSLPEAIDSIARICRAGVPAQTAFGLAAQNLRGALSEELRTIDRWLRLGVPLKQVL 208

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                 +PL E  FF+ ++ +  + GG L++ L  L+  LR+R  +  KVQA + EA+AS
Sbjct: 209 QESAHRVPLPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARAS 268

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             I+  L   V    Y  +P     L+ DP G  +LG AAA +  G+ V  LM+ 
Sbjct: 269 IKIVACLVPGVLIYQYIQAPQDFQFLVTDPTGLKVLGYAAASVAAGLFVTWLMVR 323


>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
 gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
           bercovieri ATCC 43970]
          Length = 181

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F  DFP  + +I  +  +G  ++  +     + + P+  E   +    +LG S       
Sbjct: 6   FHQDFPEVILMITMAASSGASINQILERCGYEINGPLGDELTLICRKLNLGESPETVFYD 65

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +     E  F  T+I +  Q GG L E    LS ++   K  + K   ++ + + S  
Sbjct: 66  AYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRMSVN 125

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           II  +P   S L+YF  P  +  + N   G ++     A  LIG+ ++R M+ 
Sbjct: 126 IISLMPLAFSLLLYFIDPTTIESMWNHSIGKLIFYYIIASELIGLALIRKMLR 178


>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
 gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
          Length = 326

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 80/183 (43%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R  K +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 144 RISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGV 203

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E      V+ +  + GG     L  +S  +RD ++ + ++ A+S
Sbjct: 204 EIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMS 263

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  +P  V + V  TSP Y   + ND  G  L+ +A A   +G   +  + 
Sbjct: 264 AETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLYRLA 323

Query: 184 NFD 186
              
Sbjct: 324 RLR 326


>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 198

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 87/177 (49%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +      LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 20  RVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHGIEATDQPLKDGMSRIERNVQLGVSLPD 79

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 80  AARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 139

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + ND  G ++L +A      G +V+  M+ 
Sbjct: 140 MTALVLALLPVGMAGYFLTVNPSYLLHMWNDDSGKIMLSMAFVLQATGCVVLWRMLR 196


>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 317

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 79/186 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + L   P+ LD +VR +  G     A  + V     P+    ++   +  
Sbjct: 132 LWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNVPAPLGDALQQASASLR 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L  ++  + R   L E    + V  + ++ GG   + L  +S  +RDR++ + ++ 
Sbjct: 192 ASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLERVSAYIRDRQSAERELH 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+  LP  V  L+   + GY   +  D  G  ++  AA    +G   + 
Sbjct: 252 ALSAEVRLSAWILALLPVAVGGLIMILNQGYFMTMWQDETGRKMVLGAAGLEALGSFFLY 311

Query: 181 LMINFD 186
            +    
Sbjct: 312 RLARLK 317


>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 83/183 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V      G+
Sbjct: 55  RMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTEAPLRGCLDHVSRMLRSGV 114

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+S
Sbjct: 115 EIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMS 174

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G+LP  + + V  T+P Y + +  DP G  L+ +A    + G   +  + 
Sbjct: 175 AETRLSAWVLGALPVGIGSFVIATNPKYFSAMWLDPTGRQLVYLAFILQIAGGYWLYRLA 234

Query: 184 NFD 186
              
Sbjct: 235 RLR 237


>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 324

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +    +P+R     V     
Sbjct: 139 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTCEEPLRGCLDHVSRMLR 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 199 SGVEIDRAMLHVAKVYRTKEFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + NDP G  LL +A    + G + + 
Sbjct: 259 AMSAETRLSAFVLVMLPIAIGSFVVMTNPRYLEGMWNDPSGRTLLMLAFLAQVAGSLWLY 318

Query: 181 LMINFD 186
            M    
Sbjct: 319 RMARLR 324


>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
 gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
           DSS12]
          Length = 311

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 92/183 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +   +  +F   FP  L  I R+V AG+ V  A+A +       +  EF  + +   +G+
Sbjct: 128 MRSMQMKQFDHAFPQVLGQISRAVAAGISVPQAIAQVSEYQQGFLGREFELIRDRLAIGI 187

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL +++ +    +P     FF+  + +  + GG L E L +L R L D   +K K+++L+
Sbjct: 188 SLKQTLEQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIKMKIKSLT 247

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A I+ SLP  + ++++F +P    VL N   GH +L    + + +G+ ++ ++ 
Sbjct: 248 AEPRMTALILASLPLILISIMFFKNPTSFAVLTNTQTGHHVLVYVVSSIALGLGIINMLT 307

Query: 184 NFD 186
              
Sbjct: 308 KVR 310


>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 294

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 86/182 (47%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              ++R        P  ++ I+RS++AG  +S AVA    +   PV    +RV     +G
Sbjct: 111 WRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMRPPVAEVMQRVQREVDMG 170

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SLS+++        +  +   +  + +  + GG+  + +  +  +LR R+  + +++A+
Sbjct: 171 ASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERARRELKAM 230

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SA ++  LP  V       +P Y   ++    G  LLG A A+ ++GI ++  M
Sbjct: 231 TGETRISAGVLAILPVGVGGYTVMMNPDYYATMLESTVGVWLLGGAMAWQVLGIFLIWRM 290

Query: 183 IN 184
           + 
Sbjct: 291 VK 292


>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 257

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 72  LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAALLTTEEPLRGCLDHVSRMLR 131

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 132 TGVEIDRAMLHIAKIYRTEEFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELT 191

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  + ND  G +LL  A    L G + + 
Sbjct: 192 AMSAETRLSAFVLVMLPIAIGSFVVMTNPTYLQGMWNDSLGRLLLMFAFLMQLAGSVWLY 251

Query: 181 LMINFD 186
            M    
Sbjct: 252 RMARLR 257


>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
 gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
 gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 96/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + ++R  KF+D   + L I+   ++AG    +++  +V    +P+  EF +V+    
Sbjct: 105 VRMIYEQRCTKFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+Q
Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +      I+  +PF +  +     P ++  + N   G +LL       +IG ++++
Sbjct: 225 ALTAQGMMQGIIVTLIPFILMAVFLVIDPAFIKPMFNTTLGLVLLAAMLGLQIIGGVLIK 284

Query: 181 LMINFDV 187
            ++   V
Sbjct: 285 KLVTIKV 291


>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 305

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 90/181 (49%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFVCIWFIL 300

Query: 184 N 184
            
Sbjct: 301 R 301


>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 305

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 90/181 (49%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300

Query: 184 N 184
            
Sbjct: 301 R 301


>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 312

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F++  P    ++  + +AGL +  A+ + V +  +P + E RRV +   
Sbjct: 126 LNWQRGKRTEAFINQLPELTRVLANATQAGLALRTAIGMAVEELDNPAQEELRRVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL ++++ +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V 
Sbjct: 186 VGHSLDDALNELVERLPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVT 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  + K +A  +  L      ++     G ++ +     G + + VAA     G   + 
Sbjct: 246 TLLSQVKVTAVAVPILGLGFLLIINGMRAGALDDMTGSTPGRIAVVVAAGLYAAGFFFIN 305

Query: 181 LMINFDV 187
            +    +
Sbjct: 306 RLTRVRI 312


>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
 gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 311

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR   F++  P+   ++  +  AGL +  A+A+   +   P   E  RV +   
Sbjct: 125 LNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELEAPAGEELCRVADQLA 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+  ++  +   +P +E+    T + + +Q GG +  +L NL+  L +RK  + +V+
Sbjct: 185 LGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETRREVR 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A  + +L      L+   + G +  +     G +L+ +A     +G +V+R
Sbjct: 245 TMLSEVHATALTVPALGLGSLLLINSQNEGALARVTGSALGQILILIALGLYAVGFLVIR 304

Query: 181 LMINFDV 187
            +   +V
Sbjct: 305 RLGKIEV 311


>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
 gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
           3645]
          Length = 317

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +RT       P A   I R++RAG  +  A+ ++      P+  EF    E QHLG
Sbjct: 136 HRRLQRTEMLTQQLPEAFSAISRALRAGQGLPTAIQMVANDFPKPLSEEFTHYYEQQHLG 195

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++   ++  MVR + + E+  F+  + VQ + GGNL+E L  L+ ++R R  ++ +V+AL
Sbjct: 196 VANEVALRDMVRRVDVMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKAL 255

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E +  A ++ ++P  V   +   +P Y +VL      + +L   A    IG  ++  +
Sbjct: 256 TGEGRMQAVVLIAMPVLVLAALAVVAPDYSSVLWEH---YEILIGCAISQCIGAFLISRI 312

Query: 183 INFD 186
           +N D
Sbjct: 313 VNID 316


>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
 gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
           secretion [Vibrio splendidus 12B01]
          Length = 304

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K +  +F     N L +I R+V AGL V  A+  +       +  EF  + +   LG
Sbjct: 117 YRRKMQVEEFEQGIINVLGLISRAVAAGLSVPQAIEQVSETQPGLLGREFSYIRDNLTLG 176

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LSL +S+      +P     +FS  + +    GG L + L +LSR + D + M+ KV++L
Sbjct: 177 LSLRQSLDDACVRLPYSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSL 236

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  +   +Y   P  +  L N   G  +L  A   +  G +++  +
Sbjct: 237 TSEPRMTALFLSILPLGLLGGIYLMEPAMIVQLFNTESGQRVLTYAIISISSGTLILNAL 296

Query: 183 IN 184
             
Sbjct: 297 TR 298


>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
 gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
 gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
 gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
 gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
          Length = 304

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLDNEVGEEFKKMSERLLIGEDPDDVL 186

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301


>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 294

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 90/177 (50%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +           E   F+  + V  + GGN SE + NL +++RDR+    +++A++ E +
Sbjct: 176 AARDFAELYERDEFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETR 235

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +A ++  LP  ++      +P Y+  + +D  G ++L +A A  + G +V+  M+ 
Sbjct: 236 MTALVLALLPITMAGYFLAVNPSYLLHMWDDDSGKIMLSMAFALQVTGCVVLWRMLR 292


>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 95/184 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L ++   +F    P  +D ++R++R G P++D   ++  Q    +   F ++ +   +
Sbjct: 109 QQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGLMSRLFAQMHDELQV 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +++ + +    + + E  F + V+S+Q + GG LSE LA L   LR R+ + A +Q 
Sbjct: 169 GQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAASIQT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ +A ++ +LP  +  +++ T   +   L+    G  +LG  +  + +G+ ++R 
Sbjct: 229 ITAESRNAAKVLAALPVIILLVLFTTGREHFTYLMTTTSGQWVLGYVSISVAVGLWLIRR 288

Query: 182 MINF 185
           +   
Sbjct: 289 LTRL 292


>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 320

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 80/184 (43%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               KR  + L   P  LD +VR +  G     A  + +    DP+    ++        
Sbjct: 137 RRQAKRRERLLQQLPGFLDNMVRLISIGNSPHAAFQMALNNVPDPLGDALQQAAAMLSAS 196

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   L E    + V  +  + GG     L  +S  +RDR++ + ++ AL
Sbjct: 197 PDLGQAMGQLERNWRLPEFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHAL 256

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++  LP  V  L+   + GY   + ND  G  ++ VAAA   +G  ++  +
Sbjct: 257 SSEIRMSAWVLALLPLVVGALIMVINRGYFMRMWNDDSGQTMVLVAAALEALGAFLLYRL 316

Query: 183 INFD 186
               
Sbjct: 317 AKLR 320


>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 305

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 90/181 (49%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L + + AKF +DFP+AL+I+  ++ +G  +  A   +  Q  + V  +F+ + E   +G 
Sbjct: 121 LQQAKAAKFKEDFPDALNILSGALSSGQSIVHAFEYVGNQLQNEVGKQFKLMAERLLMGE 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              + +SR     P  E  FF+  I +    GG L E ++ ++RI+ + + +  K  AL+
Sbjct: 181 DPDDVLSRSAASFPYVEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            EA+ SA II  LP     ++ FTSP   N ++ +  G  +        +IG + +  ++
Sbjct: 241 SEARMSAKIIACLPVVFLLILKFTSPENYNYVMFEEGGKPIFYYVLTSEIIGFICIWFIL 300

Query: 184 N 184
            
Sbjct: 301 R 301


>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 315

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+++   +   P   E  +V +   
Sbjct: 129 LGWQRQKRIEKFINQLPELSRILANATQAGLALRMALSLAADEMEAPAGDELEKVAQQLA 188

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G SL +++  +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 189 VGTSLDDALGELAERLPSRELVVLVTTLVLANRAGGTVVSSLRNLTETLEERKETRREVR 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +  +      L+    PG ++ +     G   +  A    ++G + +R
Sbjct: 249 TQLSQVSMTAYSVPVIGVGSLLLIDNMQPGALDRMTGSGLGQFAVVAAFGLYVVGFIAIR 308

Query: 181 LMINFDV 187
                DV
Sbjct: 309 RFSKIDV 315


>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
 gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
          Length = 304

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 87/175 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F D+FP+AL+I+  ++ +G  +  A   +  Q  + V  EF+++ E   +G    + +
Sbjct: 127 QRFKDNFPDALNILSGALSSGQSIVHAFEYVGTQLENEVGEEFKKMSERLLIGEDPDDVL 186

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R     P  E  FF+  I +    GG L + +  ++RI+ + + ++ K  AL+ EA+AS
Sbjct: 187 ARSAASFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARAS 246

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A II +LP     ++  TSP   N ++ +  G  +         IG   + +++ 
Sbjct: 247 AKIIAALPVIFIMILKVTSPENYNFVMFEEGGKPIFYYVLVSEAIGFFFIYMILR 301


>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 316

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   +  A A   +G +++R
Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309

Query: 181 LMINFDV 187
            +   DV
Sbjct: 310 RLSRIDV 316


>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 316

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 130 LNWQRQKRIEKFINQLPELARILANATQAGLALRTAIGMAAEELEAPAGEELGKVADQLA 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 190 IGASMDDALGELAGRLPSRELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVR 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G +  +   P G   +  A A   +G +++R
Sbjct: 250 TQLSQVTMTSYAVPVLGIGSLLLMNGVKDGALERMTGSPAGQAAVITAFALYAVGFVLIR 309

Query: 181 LMINFDV 187
            +   DV
Sbjct: 310 RLSRIDV 316


>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 327

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 82/183 (44%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             +K   +     P  LD  VR V  G  V  A  +    + DP++S   +       G+
Sbjct: 141 RAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLARAGM 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + A++
Sbjct: 201 DLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLSAMT 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  LP  V  L+   +  Y   + ND  G  ++  A A  + G++++  M 
Sbjct: 261 AETRLSAWVLSLLPVAVGCLIISFNASYFLNMWNDASGRNIIWAAVALQVFGVLLLYRMA 320

Query: 184 NFD 186
             D
Sbjct: 321 KLD 323


>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 322

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K  A+     P  LD  VR V  G  V  A  +    + DP++S   +      
Sbjct: 133 LYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKDPLQSVMEKAASLAR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L  +++ + R   L E+   + ++ +  + GG +   L  ++  +RDR+  +  + 
Sbjct: 193 AGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQDLS 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SAW++  LP  V  L+   +  Y   + ND  G  ++  AAA  + G++++ 
Sbjct: 253 AMTAEIRMSAWVLSLLPVAVCCLIISFNASYFLNMWNDASGRNIIWAAAALQVFGVLLLY 312

Query: 181 LMINFD 186
            M   D
Sbjct: 313 RMAKLD 318


>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 291

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 97/187 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + +KR A+F+D   + L I+   ++AG    +++  +V    +P+  EF +V+    
Sbjct: 105 VRMIYEKRCARFVDQMVDGLTIMANGIKAGSNPQESMKRVVEIMGNPMSQEFAQVLYQMQ 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +++ +   +P  +V  F T I++  + GGNL+E    +  ++R+R+ ++ K+Q
Sbjct: 165 VGDSFESALNDLGNRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQ 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ +      I+  +PF +  +     P ++  + +   G +LL       +IG ++++
Sbjct: 225 ALTAQGLMQGIIVTLIPFILMVVFSIIDPTFIKPMFSTTLGLVLLVAMLGLQIIGGVLIK 284

Query: 181 LMINFDV 187
            ++   V
Sbjct: 285 KLVTIKV 291


>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 308

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 91/182 (50%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G
Sbjct: 125 HRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KELDQAVLQVGRAYKVEELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V+  ++  + GY+ ++  DP G  +L  AAA  + G +++  +
Sbjct: 245 SAETRLSAWVLGLLPLVVAGGLFTLNAGYILMMWKDPTGKTMLLSAAALEVAGALMLYRL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
 gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
          Length = 300

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 3   HLIKKRTAK--FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +L  K+ A+  F   F  AL+II  +V AG  +   +     + S  V  EF  + +   
Sbjct: 115 YLQSKKLARQAFETGFAEALNIIGGAVGAGNSLLHGIEQSGQKVSGIVGEEFTIISQRLE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +          +  +E  FF   + +  + GG + E +++L++++ + + M  +  
Sbjct: 175 IGEDVESVFMDSYERLFYREYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKL 234

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E +AS  I+  +P      + F SP   +VL++DP G MLL    A  L+G+  + 
Sbjct: 235 AKTAEPRASIKILMVIPVGFFFFLKFLSPENFDVLLHDPTGQMLLYYCIASELLGLFWVW 294

Query: 181 LMIN 184
            MIN
Sbjct: 295 TMIN 298


>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 314

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +KR  KF++  P    I+  + +AGL +  A+ +   +   P   E  +V +   
Sbjct: 128 LNWQRQKRIEKFINQLPEMARILANATQAGLALRTAIGMAAEEMEAPAGEELGKVSDQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ +++  +   +P +E+    T + + ++ GG +  AL NL+  L +RK  + +V+
Sbjct: 188 VGASMDDALGELADRLPSRELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +++ +  L      L+     G ++ +     G   + +A +   +G +++R
Sbjct: 248 TQLSQVTMTSYAVPVLGVGSLFLMNGVKDGALDRMTGSAFGQAAVIIAFSLYAVGFVLIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
 gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
          Length = 338

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 84/184 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G
Sbjct: 155 RRISARRLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTG 214

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + +  ++  + +   ++E     +V+ +  + GG     L  ++  +RD +  + ++ A+
Sbjct: 215 VEIDRAMLHIAKEYRVREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAM 274

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA    ++G  ++  M
Sbjct: 275 SAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRM 334

Query: 183 INFD 186
               
Sbjct: 335 ARLR 338


>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
 gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
          Length = 308

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++++  +    F  +FP+AL+++  SV AG  +  A+  +     + V  EF+R+ E  +
Sbjct: 121 IRYMDIRTQNAFERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNIVGREFKRMGERLN 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S      +  +  P     FF   + V    GG L   +  L+R+L + ++++ K +
Sbjct: 181 IGESTDAVFRKACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKR 240

Query: 121 ALSMEAKASAWIIGSLPF-CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           A++ EA+ S++I+ ++PF  +  ++   SP   + ++NDP G  LL        IG+ ++
Sbjct: 241 AMTAEARMSSYIVCAIPFIFLFGVLRVLSPENYDFVMNDPGGRYLLYYMLTSEAIGMGIV 300

Query: 180 RLMIN 184
             ++ 
Sbjct: 301 FWLMR 305


>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
          Length = 296

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 79/178 (44%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K++   F + FP  L I+  +  +G  ++  +     +    + +EF  +    +LG + 
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAP 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
               +   R     E  FF++VI +  + GG LS+ +  + + + +   +K +   ++ +
Sbjct: 175 EIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQ 234

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +  ++  +P   +  +Y+  P  +  L +   G  ++       ++GI ++R MI
Sbjct: 235 IRMTTNVVSLIPIVFTAFLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 292


>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
             +I++R       F +AL  +  +V+AG  V  AV   V            +  EFR +
Sbjct: 66  NRMIRERRKNLNYQFKDALTSLSVAVQAGYSVESAVKTCVRDLERLYGKGTDIVEEFRYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
              QH+ + L E    +     ++++  F++V     + GG+++  +  +SR+L D+ ++
Sbjct: 126 ESQQHISVPLEELFLDLGERSQIEDIENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A     K+   I+  +P  +   +  TSPG+++VL  +P G   + +        
Sbjct: 186 KKEIEATLAAKKSEQMIMSLMPVGIILYLQMTSPGFLSVLYGNPFGIAAMSICLVIYAAA 245

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 246 YWLGRRIVDIEV 257


>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 312

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 87/187 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT  F+   P    ++  + +AGL +  A+ + V +  DP R E RRV +   
Sbjct: 126 LNWQRAKRTEAFISQLPELTRVLANATQAGLALRTAIGMAVEELDDPAREELRRVADQLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG SL +++  +V  +P +E++   + + + ++ GG +  +L NL+  L +RK  + +V 
Sbjct: 186 LGRSLDDALGDLVERLPSRELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVT 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  + K +A  +  L      ++     G +  +     G + + +A     +G +++ 
Sbjct: 246 TLLSQVKVTAVAVPVLGLGFLLVINGMRDGALEDMTGALGGRVAVLIATGLYALGFILIN 305

Query: 181 LMINFDV 187
            +    +
Sbjct: 306 RLTRVRI 312


>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
 gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
          Length = 329

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 84/184 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I  R  K +   P+ LD +VR V  G  V  A    +G +  P+R    +V      G
Sbjct: 146 RRISARRLKIVRQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRLCLDQVSRMLRTG 205

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + +  ++  + +   ++E     +V+ +  + GG     L  +S  +RD +  + +++A+
Sbjct: 206 VEIDRAMLHIAKEYRIREFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAM 265

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAW++G LP  V + V  T+P Y   +  +  G ++L VA     IG  ++  M
Sbjct: 266 SAETRLSAWVLGLLPIAVGSFVVSTNPKYFMAMWMNESGRVVLYVAFILQAIGGFMLYRM 325

Query: 183 INFD 186
               
Sbjct: 326 ARLR 329


>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 306

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 87/184 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M  L  +    F + FP+AL ++  +V AG  +  +   +      PV  EF+++ +   
Sbjct: 120 MNWLQAREKQHFEEAFPDALTMLASAVSAGEGLMQSFIFVGRTLDGPVGKEFKKMGDRLQ 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S +   S+  +  P     FF   +      GG + E +A L+R++   + ++ K  
Sbjct: 180 MGESTNAVFSKSCQRFPYPSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKY 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ EA+ SA I+G+LPF    L+ + SP     ++  P G  +L        IG+ ++ 
Sbjct: 240 ALTSEARVSAKIVGALPFFFLFLLQYISPDNFEFVMFHPDGRPVLYYVMISECIGMGLIW 299

Query: 181 LMIN 184
           L++ 
Sbjct: 300 LLMK 303


>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 314

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT +F++  P    I+  + +AGL +  ++++   +  +P   E  RV     
Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELENPAGEELARVARRLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +         L+    PG ++ +     G   + VA     IG +V+R
Sbjct: 248 TQLSQVTVTAYAVPIFGVGAMLLMNAVMPGALDRMTGAFIGQAAVVVAIVLYAIGFVVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLSRIDV 314


>gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 313

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +K         P+   ++  SV+AGL +   + ++  +   P ++ F  +     
Sbjct: 128 LKVKQQKLVDALNRQLPDICRLLSSSVKAGLNIQQGIELVAREQKPPAQTVFTELAHQLQ 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +L  + S ++  +P +E+    + I VQ + GGN++  L  +S+ L +R  +  +++
Sbjct: 188 LGNTLENAFSHIMEELPSKELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + E K  A I+  +P     ++  + PG+   L   P G +L  +      +G +++ 
Sbjct: 248 GKTAETKFVAMILPFMPIVAGLVLNISFPGFFRPLF-TPLGLILAALVIGIETVGFILIA 306

Query: 181 LMINFDV 187
            + +  V
Sbjct: 307 KITDIRV 313


>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 312

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 89/184 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q 
Sbjct: 127 LWNRVRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQNSIANTDAPLRQCLVQAVHLQR 186

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L +++ +M R   LQE+   ++V+ +  + GG     +   +  +RDR+  + ++ 
Sbjct: 187 AGKELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQRELM 246

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E + SAWI+G LP  V   ++  + GY+ ++  DP G  +L  A A  + G  ++ 
Sbjct: 247 ALSAETRLSAWILGLLPLVVGGGLFVLNAGYVLMMWRDPTGKTMLLTALALEIAGAFMLY 306

Query: 181 LMIN 184
            +  
Sbjct: 307 RLAK 310


>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 301

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 83/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             KK+  +F  +    L ++ R+V AGL V  A+  +    +  +  EF  + +   LG+
Sbjct: 116 RRKKQIEEFDTNIVQVLGLVSRAVSAGLSVPQAIEQVANSQTGLLGREFALITDNLALGI 175

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL +++      +P +   +FS  + +    GG L E L NLSR + D + M  KV++++
Sbjct: 176 SLRQTLDEACTRLPYRTFRYFSVALILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMT 235

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A  +  LP  +  +V +       +L+    G  +L   AA +  G   +  + 
Sbjct: 236 AEPRMTAKFLSLLPLILVAVVAWIDVSLFELLVYTESGQSILIYCAASIAFGGFTLHSLT 295

Query: 184 N 184
            
Sbjct: 296 K 296


>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
          Length = 315

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 90/187 (48%), Gaps = 1/187 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++        +          ++  +  AGL +   + ++V +   PV+ E  RV+    
Sbjct: 130 LRSRQHIYAQRMDSQLSEVCRLLSSAASAGLSIPQGLRLVVQEMPAPVKIELGRVVREIE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L  +++ ++  +  Q++  F   + +Q + GG+L++ ++ ++  + +RK +   ++
Sbjct: 190 LGRDLEGALNDLLERIHTQDMKVFINALIIQRRAGGDLAKVMSQMAATMEERKIIHQTIK 249

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ +A+ SA+ +  +   ++ ++     G+ + L     G ++L +     ++G++++R
Sbjct: 250 AVTSQARTSAYALPIISLLIAFMLSKMIDGFYD-LFTTLPGMIVLALFVGLQVLGVVLVR 308

Query: 181 LMINFDV 187
              N  V
Sbjct: 309 KFSNIRV 315


>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 294

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 92/173 (53%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            ++  P  LD  VRS+++G  ++DAV   +  ++ P++    R+     LG+SL ++   
Sbjct: 120 MIEQLPQLLDHSVRSLKSGRTLADAVLFGITAANQPLKEGMSRIERNVQLGVSLPDAARD 179

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                   E   F+  + V  + GGN SE + NL R++RDR+    +++A++ E + +A 
Sbjct: 180 FAELYESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTAL 239

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++G LP  ++      +P Y+  + ND  G +LL +A A  L+G +++  M+ 
Sbjct: 240 VLGLLPVGMAGYFMAVNPAYLMHMWNDGSGRILLSMAFALQLLGCLMLWRMLR 292


>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 242

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 56  LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 115

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 116 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 176 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 235

Query: 181 LMINFDV 187
            +   DV
Sbjct: 236 RLGRIDV 242


>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 314

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 86/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KRT +F++  P    I+  + +AGL +  ++++   +  DP   E  RV     
Sbjct: 128 LNWQRIKRTERFINQLPELSRILANATQAGLALRTSLSMAAEELEDPAGEELARVARRLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L +++S +   +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 VGEPLEDALSELTDRLPSRELVVLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVK 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+ +         L+    PG ++ +     G + + V+     IG +V+R
Sbjct: 248 TQLSQVTVTAYAVPLFGIGAMLLMNAVMPGALDRMTGAFFGQVAVVVSIVLYAIGFVVIR 307

Query: 181 LMINFDV 187
                DV
Sbjct: 308 RFSRIDV 314


>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 224

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 87/186 (46%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + +   P+ LD IVR V  G  V  A    +  + +P+RS    V     
Sbjct: 39  LASRIQRRRLRIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDHVSRMLR 98

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 99  GGVEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 158

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y++ + NDP G  LL VA    L G + + 
Sbjct: 159 AMSSETRLSAFVLVMLPIGIGSFVVMTNPKYLHGMWNDPSGRTLLMVAFLLQLGGSVWLY 218

Query: 181 LMINFD 186
            M    
Sbjct: 219 RMARLR 224


>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
 gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
           proteinsecretion [Moritella sp. PE36]
          Length = 311

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 93/183 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  ++  +F   F   L  + R+V AG+ V  A+A I       +  EF  + +   +G+
Sbjct: 128 MRTRQHREFDAAFTQVLGQMSRAVSAGISVPQAIAQIADYQQGMLGREFSLIRDKLEIGI 187

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++++    +P     FFS  + +  + GG L E L +LSR + D   +K K+++L+
Sbjct: 188 GLKQALNQASIRLPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLT 247

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A I+ SLP  +  ++YF +P     L   PRGH++LG     M +G+ ++ L+ 
Sbjct: 248 AEPRMTAAILASLPILLIGVMYFKNPSAFITLTQSPRGHLVLGYVVTSMALGMAIIHLLT 307

Query: 184 NFD 186
              
Sbjct: 308 KVR 310


>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
 gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
          Length = 308

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 89/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + +++   K L   P  LD +VR +  G  V  A    +  +  P+R    + +  Q  G
Sbjct: 125 NRVRRLHKKLLSQLPGFLDGVVRLMTIGSSVPAAFQNSIANTEAPLRQCLVQAVHLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L +++ ++ R   ++E+   ++V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KELDQAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V+  ++  + GY+ ++  DP G  +L  A A  + G  ++  +
Sbjct: 245 SAETRLSAWILGLLPLVVAGGLFMLNAGYILMMWKDPTGKTMLLSALALEIAGAFMLYRL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
           thermocellum DSM 2360]
 gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 268

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRR 54
           K +I+KR ++    F + L  I  S+ AG  V  A    +        DP   +  E   
Sbjct: 76  KDIIEKRKSELNLQFKDLLYSISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEY 135

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++ +++  + +   L+++  F+ V     + GGNL   + N + I+ D+  
Sbjct: 136 IVRRLEMNETIEDALEDLAKRSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIE 195

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    ++  +PF +  ++  T+  YM  + +   G +++  A   + I
Sbjct: 196 IKEEINTLLAAKKFEQKVLSVMPFIMILILSLTTEDYMAPVFDTIVGRIVMTFAIIIIAI 255

Query: 175 GIMVMRLMINFDV 187
           G  V + +++  +
Sbjct: 256 GYFVSKKIMDIKI 268


>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
 gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
          Length = 294

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 90/176 (51%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +F    P  +D ++R++R G P++D    +  Q    +   F ++ +   +G  +++ +
Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGLMSRLFAQMHDELQVGQPVAQVM 176

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +    + + E  F + V+S+Q + GG LS+ LA L   LR R+ + A +Q ++ E++ S
Sbjct: 177 RQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAESRNS 236

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A ++ +LP  +  +++ T   +   L+    G  ++G  +  + +G+ ++R +   
Sbjct: 237 AKVLAALPVIILLVLFSTGREHFTYLMTTASGQWVMGYVSISVAVGLWLIRRLTRL 292


>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 161

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 89/161 (55%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG+ ++ A   +V +S  P+  EF  ++  Q LG++L +S++ + R +P    +   +
Sbjct: 1   MRAGVGLNAATQQLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTLVVS 60

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            + + ++ GG L+EAL   S  +R R  M+ K+ AL+ + K  AW++G LP  +  ++  
Sbjct: 61  AMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQAWVVGMLPLSLMAVLNK 120

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             P  M+ L +   G   L V A   ++G++++R ++  DV
Sbjct: 121 MEPESMSYLWHSQVGWATLAVIAFLEIMGVVLIRKIVAIDV 161


>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
 gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
          Length = 204

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+R     V     
Sbjct: 19  LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRGCLDVVSRMLR 78

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  + +    +E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 79  GGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELT 138

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+S E + SA+++  LP  + + V  T+P Y+  +  DP G  LL +A    ++G + + 
Sbjct: 139 AMSSETRLSAFVLVMLPIAIGSFVVMTNPKYLYGMWGDPSGRSLLMIAFLAQVVGSIWLY 198

Query: 181 LMINFD 186
            M    
Sbjct: 199 RMARLR 204


>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
 gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 306

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 90/184 (48%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              K   +  +       ++  S+RAGL +S  ++++  + + P   EF R+     LG+
Sbjct: 124 RRNKYQERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEMNYPAGDEFSRMARELQLGV 183

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   ++S M + +P +E   F+  + +Q + GGNLS+ L  ++  L DR+ +  +++ ++
Sbjct: 184 SFDRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTMT 243

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +  + ++  +P  +  ++   + G+++ L +     +L        L+  ++++ + 
Sbjct: 244 AEQRYVSILVPIMPVALVLMMNTMNKGFIDPLFSGFGLFLLGLFVIG-TLLSYILVKKVT 302

Query: 184 NFDV 187
           N  V
Sbjct: 303 NIKV 306


>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 303

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 93/181 (51%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +++R    +   P  +D + R++  G  V  AV  +      P+R+   RV+    LG 
Sbjct: 121 RLQRRQRIIVTQIPLFIDQVSRALSTGKSVEGAVRSVTEDMQMPLRAVLDRVVRATDLGA 180

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++++ +      ++E+   +  I + S  G +  E L ++ +++R ++  + ++ A++
Sbjct: 181 GFADAMQKAAELHHIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMT 240

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E K +AW++   P  +   ++  +PGY+++++NDP G ++   A A  ++G+++   M+
Sbjct: 241 GETKMTAWVLSLTPLLIVGYMFIANPGYIDMMLNDPSGALIFKAALAMQVVGVLIFWRMM 300

Query: 184 N 184
            
Sbjct: 301 K 301


>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
 gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
           part [Cupriavidus metallidurans CH34]
          Length = 309

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 87/181 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I++   K L   P  LD +VR +  G  V  A    V  +  P+R    +VI  Q  G 
Sbjct: 127 RIRRIKEKMLRQLPGFLDGVVRLMTIGSSVPAAFQNSVANTEPPLRQCLVQVIHLQRAGK 186

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L +++ +M R   L E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 187 ELDQAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALS 246

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++G LP  V   ++  + GY+ ++  DP G  +L  AA   + G  ++  + 
Sbjct: 247 AETRMSAWVLGLLPLIVGGGMFVFNAGYILLMWRDPGGRAMLLTAAGLEVAGAFLLYRLA 306

Query: 184 N 184
            
Sbjct: 307 R 307


>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 282

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 93/184 (50%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + K+R A      P+ L +   ++RAG   + A+  +V ++  P+  E   ++    LG+
Sbjct: 99  MRKRRIAMLERQLPDVLLMTAGALRAGASFAVAMESVVSEAPAPISGELELLMRELRLGI 158

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + R +P+ +    +  +++  ++GGNL+EAL +++R L  +  M+ K++AL+
Sbjct: 159 DLDIAMQNIERRIPVPDFLMVTAAVTISREVGGNLAEALESVARTLGAKLQMEGKIRALT 218

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +    ++  LP  +  ++ F  P  M  L ++  G + L V A    +G   +  + 
Sbjct: 219 SQGRMQGIVMTLLPLGLMVVLNFMEPEAMAPLFHERVGWLTLAVIAVMEFLGYKAISKIT 278

Query: 184 NFDV 187
           N DV
Sbjct: 279 NIDV 282


>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
 gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
 gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 314

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     KR   F+   P+   ++  +  AGL +  A+A+   +  +P   E   V +   
Sbjct: 128 LNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELENPAGEELSNVADQLA 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ E++  + R +P +E+    T + + ++ GG +  +L NL+  L +RK  + +V+
Sbjct: 188 LGRSIDEALDELSRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVR 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  E  A+A+ + +L      LV   + G ++ +     G  L+ ++     +G  V+R
Sbjct: 248 TMLSEVNATAFTVPALGLGSLLLVNAQNDGALHRVTGSGLGQFLILLSLGLYTVGFFVIR 307

Query: 181 LMINFDV 187
            +   DV
Sbjct: 308 RLGRIDV 314


>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
 gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
          Length = 322

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 318

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+A D++ R++RAG  V  A  VI    + P++ EF    E QHLG+    ++  
Sbjct: 146 LARQLPDAFDVMSRALRAGQTVPAAFQVIATDFNSPLKEEFAHCYEQQHLGIERDVALRD 205

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R   + E+  F   + +  + GGNL+E L NL+ +LR R  +  +++AL+ E +  A 
Sbjct: 206 LARRTSVMELQIFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQAV 265

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           ++ +LP  +  ++Y  +  Y  VL++ P   MLL       LIG + +R +I+ +
Sbjct: 266 VLIALPAVIFGVMYVMNREYAQVLLDRP---MLLIGCGISQLIGALCIRKIIDIE 317


>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
 gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
          Length = 295

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 95/187 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R+ KF+   P+AL  +  ++++GL +  ++  +V    +P+  EF +V+    
Sbjct: 109 LLEMKKNRSDKFVKQMPDALAAMSTALKSGLNLVKSLQQVVRNQPEPLAQEFAQVLVEYR 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  L++S   + + +   EV   ++ I +   +GGNL+    NL+  LR+   ++ K++
Sbjct: 169 IGTDLNDSFGDLAKRIDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIK 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++    +   +  ++P  V+ + +      M +L +   G + LG+      +G+  ++
Sbjct: 229 AMTAMGSSQGKLALAVPIVVALVFFQQERAAMEMLFHTKLGWIWLGMMVFSAFLGMTFIK 288

Query: 181 LMINFDV 187
            ++N DV
Sbjct: 289 KIVNVDV 295


>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
          Length = 330

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            K+L     A +++ R +R G  V++A    VG   DP+  EF R +     G+    + 
Sbjct: 156 EKYLRQIAGAFELMARVIRTGQSVTEAFRAAVGAFDDPLAEEFGRCVHQIEHGIRPEAAF 215

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M     + E+  F   +++Q Q GGNLSE L  L+ ++R R  ++ K++AL+ E +  
Sbjct: 216 REMSDRADVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQ 275

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +  LP  V  ++YF +  Y   L+       LL      + +G + +R ++NF+
Sbjct: 276 SRTLTVLPVVVFAMMYFLNRPYAEGLLAQ---WRLLLGTVTCVAVGTLWIRNIMNFE 329


>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 322

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  KR     +  P+AL  +    +AGL +      +  +   P+ + F R      
Sbjct: 135 LRTVQDKRRDALREGIPDALRSMAVCFQAGLSLLQTFQQVASEVQGPLGTLFARAAHQLE 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     ++  + R   + E++F +  + VQ Q GG++ + L      ++    ++  ++
Sbjct: 195 TGEGAGRALEVLRRGSSVAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALR 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             + +AK SA ++  LPF +  +    S G+++     P G  LL +A      GI+ +R
Sbjct: 255 VQTAQAKLSARVVSVLPFVLIAVFSLVSEGFLDPFFASPMGMALLAIALGMQAAGIVAVR 314

Query: 181 LMINFDV 187
            M+  +V
Sbjct: 315 RMLAVEV 321


>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
 gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 308

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 78/178 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L 
Sbjct: 129 RRRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLD 188

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E 
Sbjct: 189 AALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEV 248

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SAWI+  LP  ++  +   +      + +DP G  LL  A      G   +  M  
Sbjct: 249 RLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 306


>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 300

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 84/178 (47%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R        P AL  +  +VR+G  +S+A  ++  +   P+  EF    +   LG +   
Sbjct: 121 RVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSKEIKGPLGQEFAYAHQQLELGHAPVS 180

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            ++RM   +PL E   F+T + V  + GGNLS     +S   RDR++++  + A++  ++
Sbjct: 181 VMNRMATRVPLTEFRVFATAVVVHRRAGGNLSLLTERMSHSARDRQDVRNHLMAVTSGSR 240

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            SA+ +          + +  P Y+   + +P+G  LL +A    ++G + +  ++  
Sbjct: 241 LSAFGMVLGGIIAVAFLTWLEPDYVRAFLENPKGPWLLFIAFMLQVVGAIWVWRILKV 298


>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 330

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 83/182 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++K   + +   P  +D +VR +  G     A  + +     P+R    R       G+
Sbjct: 148 RLQKFRRQLVSQLPAYIDSMVRLITIGNSTQAAFQLAIANCEPPLRGYLDRAASLVRAGV 207

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ A+S
Sbjct: 208 DLDRALHQTAVSVRIEEMYLLASILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMS 267

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V T +  ++P Y   L ND  G ML+  A    L+G   +  + 
Sbjct: 268 SETRLSAWILGLLPVGVCTFLMISNPSYFMGLWNDGTGRMLIFSAVGLQLLGAAFLYRLA 327

Query: 184 NF 185
             
Sbjct: 328 RL 329


>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
          Length = 295

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
 gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
           ATCC 43380]
          Length = 272

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   KK  + F  DFP  L +I  +  +G  ++  +     + + P+ SE R +    +
Sbjct: 86  IKAARKKHYSLFKQDFPEVLLMINMASSSGASINQVLERCGQEITGPLGSELRLICRRLN 145

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S         +     E  F  T+I +  Q GG L +    LS+I+   K  + K  
Sbjct: 146 LGESPESVFHDAYQRFNFPEFYFLITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKA 205

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ E + S  II  +P   S L+YF     +  + N P G ++        +IGI ++R
Sbjct: 206 TMTAETRMSVNIISVMPIAFSLLLYFIDSTSIESMWNHPTGKLIFYYIIISEIIGISLIR 265

Query: 181 LMIN 184
            M+ 
Sbjct: 266 KMLR 269


>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
 gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 321

 Score =  140 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 135 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 195 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIS 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 255 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 314

Query: 181 LMINFDV 187
            M+   V
Sbjct: 315 SMMKVSV 321


>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 318

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 132 IRYYLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 191

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 192 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 252 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 311

Query: 181 LMINFDV 187
            M+   V
Sbjct: 312 SMMKVSV 318


>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
 gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
 gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
 gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
 gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
 gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
          Length = 294

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
 gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
 gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
          Length = 295

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 75/183 (40%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K   ++    F + FP  + I+  +  +G+ +  A+         P+  EF  + +    
Sbjct: 110 KMGQRRNKKMFDETFPEVIQILNAATSSGVSLLQAMERCGKDIRGPLGQEFTLIYKRLAR 169

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G              P +   FF  +I      GG + E ++ L R + D   M+ K +A
Sbjct: 170 GEDAMAVFQDSYSRYPYKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKA 229

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ EA+ S  I+   P      + F +P   + ++NDP G ++L       L+GI  +  
Sbjct: 230 MTAEARMSVMIVACFPVFFFFFMKFMTPENFDFMMNDPGGRIILYYVVGSELLGIFTVWW 289

Query: 182 MIN 184
           ++ 
Sbjct: 290 LMR 292


>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 306

 Score =  140 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLS 64
           KKR+ +F     +AL +I  ++R G     +++ +     +P+ SE +RVIE   +  +S
Sbjct: 123 KKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFMPEPIHSELQRVIEDVSNASIS 182

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ++  R+   +   E    +T + +Q + GGNL+  +  ++  +  R  +K KV++ + 
Sbjct: 183 LPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDTIAETIARRIELKNKVRSSTA 242

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            A+ SA  + ++PF V     + SPGYM+     P    ++  AA    IG+ ++  M  
Sbjct: 243 NARFSAVFVAAVPFAVLAFFTYGSPGYMDNFYAWPFWPAVIIAAAVLDGIGLFLISRMYK 302

Query: 185 FD 186
           F 
Sbjct: 303 FK 304


>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
 gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
          Length = 293

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 91/179 (50%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  + +   P  LD +VRS+ AG  + DA+   V  + DP+R  F        LG+ L
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEDAEDPLRDIFGLARNHVLLGIHL 172

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++  +     ++E+   +  +SV  + GGN ++ L  + R++ +R+ +  ++ A++ E
Sbjct: 173 PEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAMTGE 232

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   +  M+ 
Sbjct: 233 TRISAYVLAGVPSALGGYILASNPGYLLNMWADGSGRFLLLASLGLQLLGCYALWRMLK 291


>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
 gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 281

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 88/171 (51%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R +
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRV 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
 gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
          Length = 302

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 89/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +KR  + L   PN LD +VR    G  ++ +    +  +  P++      ++ Q+ G
Sbjct: 119 YRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTALENAEQPLKEALGLAVQMQYAG 178

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L L +++ R+ R   L E    ++V+++    GG     L  L++ LRDR+    ++ A+
Sbjct: 179 LELDQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQEMLAM 238

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S EA+ SA  +  L   ++ ++   +P Y+  + ND  G MLL VA    + G  ++  M
Sbjct: 239 SSEARMSAVFMCCLTPALAGIILTLNPAYLGTMWNDDTGRMLLFVAGILQIAGAAIIYRM 298

Query: 183 IN 184
           + 
Sbjct: 299 VK 300


>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
 gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
 gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 294

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 94/184 (51%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R  + +   P  LD +VRS+ AG  + DA+   V  + +P+R  F        
Sbjct: 109 LGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVENAEEPLRDIFTLARNHVL 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++  +     ++E+   +  +SV  + GGN S+ L ++ +++ +R+ +  ++ 
Sbjct: 169 LGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKLIHEREKLSRQLH 228

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A++ E + SA+++  +P  +   +  ++PGY+  +  D  G  LL  +    L+G   + 
Sbjct: 229 AMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW 288

Query: 181 LMIN 184
            M+ 
Sbjct: 289 RMLK 292


>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
           3_1_45B]
          Length = 292

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 95/174 (54%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
            FL  FP A+D   RS++AG+PV  A+ ++     D       ++     +GL   E++ 
Sbjct: 115 AFLSRFPEAVDNFTRSIQAGIPVDRALKILGEAYDDEFGRRVLKLCREMKVGLPFREALG 174

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                +   +V FF  V+++  + G  LS  LA+LS +LR+R+ +  K++AL+ E++ASA
Sbjct: 175 NFADELDDPDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASA 234

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP  +  L  F +P  +  L+NDP G ++ G A A ML G ++++ M  
Sbjct: 235 RVLCLLPVFILGLQAFLNPSQLLFLVNDPAGRIVAGCALACMLAGFIIIQRMSR 288


>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
 gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K LI++R  K    F +AL+ +  +V+AG  V +AVA               +  EF  +
Sbjct: 56  KGLIRERKRKLNYQFKDALNALSVAVQAGYSVENAVAACSRDLERLYPKETDIVKEFHYI 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                + + + E +  +     +++V  F+ V     + GG+++  +   +R+L D+ ++
Sbjct: 116 ETQLRVSVPVEELLLSLGDRSGIEDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKIDV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++      KA   I+  +P  +   +  TSPG+++VL  +  G   + +     ++ 
Sbjct: 176 RKEIETTLAAKKAEQMIMSLMPAGIILYLKLTSPGFLSVLYGNLFGMCAMTLCLGIYVLS 235

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 236 YWLGRRIVDIEV 247


>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
 gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
          Length = 308

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 96/184 (52%), Gaps = 1/184 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              K T +  +    A  ++  + ++G+ ++  + V+  + + P R EF+ + +   LGL
Sbjct: 126 RKNKYTEQLNNQLSEACRLLGNATKSGMTITQGLEVVASEINSPAREEFKVLTQNLRLGL 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               +++ M + +  +E   F + + +Q + GGNL++ L  +++ L +RK ++  ++  +
Sbjct: 186 DFERALAEMEKRIKTREYKLFISALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTAT 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E +  ++I+ ++P  +  ++     G+++++   P G +L+ +    M + ++++R + 
Sbjct: 246 AEQRFVSYILPAMPIFLLFMLNNIMDGFIDLIFTVP-GAILMTIFIIGMAVALILVRAVT 304

Query: 184 NFDV 187
           N  V
Sbjct: 305 NIKV 308


>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
 gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
           [Planctomyces maris DSM 8797]
          Length = 285

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 78/180 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K  D   + +D + R+ + G  ++     +  ++  P+  E +       +G+S
Sbjct: 101 RSRRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEKTPAPLGDELKEASRRLQMGVS 160

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +     +  ++  S  + V  + GG+L + L  L+R +RDR     +++  + 
Sbjct: 161 MKAALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRDRVLFLGRLRTATA 220

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++A+A ++  LP  +        P Y+  L+    G      A A  +IG + +  ++ 
Sbjct: 221 GSRATAVLMILLPPLILGFFILRDPTYLTTLMASSWGRGATFTAIALQVIGSLWVLRVLK 280


>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 247

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K LI++R       F +AL+ +  +V+AG  V +AV                +  EF  +
Sbjct: 56  KGLIRERKKNLNYQFKDALNALSVAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYM 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                + + + E +        ++++  F+ V     + GG+++  +   SR+L D+ ++
Sbjct: 116 ETQLKVSVPVEELLMSFGDRSGIEDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++      KA   I+  +P  +   +  TSPG++ VL  +P G + + +      + 
Sbjct: 176 RREIETTLAAKKAEQMIMSLMPAGIILYLKMTSPGFLEVLYGNPFGILAMSLCLGIYGLS 235

Query: 176 IMVMRLMINFDV 187
             + R +++ +V
Sbjct: 236 YWLGRRIVDIEV 247


>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 290

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 81/177 (45%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
               F D FP  L ++  +V AG  +  A+          +   F R+    +LG     
Sbjct: 111 HRRYFEDRFPEILSVVNAAVSAGNSIHQALHRCGEGIDGDLGVTFHRIDRRLNLGEDPER 170

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
             +        +E  FF  V+ V  Q GG L   +  LSRI+ + KNM  +  A++ EA+
Sbjct: 171 VFNDAWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEAR 230

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            SA I+ SLP      + + SP   + +++DP G ++L    A   IG++++ +++ 
Sbjct: 231 TSAKIVASLPLLFFCGMKYFSPENFDFVVHDPVGRLILYYVIASEAIGMIIIWILLR 287


>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
 gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
          Length = 282

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 99/187 (52%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K R  +F +  P+ L  +  ++RAG  +  A+  IV QS  P+  EF  ++  Q 
Sbjct: 96  IGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHIVAQSPAPLSQEFGLMLRQQR 155

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ + R MP +      + +++ +Q GGNL+E L +++  LR R  + ++VQ
Sbjct: 156 MGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETLESIAATLRARLRLLSRVQ 215

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ + +  AWI+  LP  ++ ++++  P  M  L   P G  ++       ++GI  +R
Sbjct: 216 ALTSQGRLQAWIMAGLPPVLAIVLHYLDPDSMRALWETPAGWSVVAAIVTMEVLGIWFIR 275

Query: 181 LMINFDV 187
            ++   +
Sbjct: 276 RIVAITI 282


>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 308

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 82/183 (44%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L +++ AKF    P    I+  S  AGL +  A+ V   +  DP   EF  +     +G 
Sbjct: 125 LKERQRAKFFQQLPEFARIMANSTGAGLSIHTALGVAASELPDPASREFSALKRELEIGT 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ RM   +  +++    + + +  + GG+L  +L N+S  L  RK  K +V+ L 
Sbjct: 185 PLDIALERMSERISGRDLDVLVSTLVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLV 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            ++  + +++ +       L+   + G +  L +   G + + +A     IG++ +  ++
Sbjct: 245 SQSSYTGYLVVAFGVGFVLLLASFNDGLLLKLTSTIIGQIAIVIATVCYAIGLVAINRLV 304

Query: 184 NFD 186
              
Sbjct: 305 KVK 307


>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 318

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               K  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G
Sbjct: 135 RRTSKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  +++   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A 
Sbjct: 195 MDLDRALALAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++  +
Sbjct: 255 TSETRMSAWVLGLLPPACAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 314

Query: 183 IN 184
             
Sbjct: 315 AK 316


>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
 gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
          Length = 312

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +RT +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   
Sbjct: 126 LNWQRARRTERFINQLPELARILANATQAGLALRTAIGIAAEELEAPAGEELSRVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ E++  +V  +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++
Sbjct: 186 VGHSIEEALGEIVERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++ ++      LV    PG ++ +     G   + +A     +G +++R
Sbjct: 246 TQLSQVTVTAYLVPAIGLGSLLLVDLMMPGALDRMTGAWIGQTAVLIALGLFTLGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSKIDV 312


>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 287

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAVAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRTVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMILMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
 gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
          Length = 281

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 89/185 (48%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + +  KR        P  L  +   +++G+ + +AV  +  +   P+  E   +I    L
Sbjct: 95  RRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVNAVTSLFDEFEAPLGQEVNELIRQVRL 154

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L  +++   R +P+  ++     +++  + GG  S+ L  L+  L  ++ ++ + QA
Sbjct: 155 GDDLPTALTDWQRRVPIFSITLVVQALTLGYRNGGQQSQVLRRLAENLGQQQKVRDRQQA 214

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           LS + +  AW++  +P  +  L+ +  P +   L N   G + LGVA    LIG M+++ 
Sbjct: 215 LSAQGRMQAWVLICMPLALFLLLNWMKPTHTAYLTNTLIGQVALGVAIVLTLIGAMMVKR 274

Query: 182 MINFD 186
           ++N D
Sbjct: 275 ILNTD 279


>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
 gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
           protein [Slackia exigua ATCC 700122]
          Length = 335

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 6   KKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++R     +  +  P+AL  +     AGL V  A A +  ++  P+R  F  V     LG
Sbjct: 150 RRRDAELQRMRELVPDALRCMEACFHAGLTVPQAFAEVARETKPPLRDAFSMVSHDMELG 209

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+ E++ R  R   L E+SF +  + VQ   GG+ S  + +    +     ++  ++  
Sbjct: 210 RSVDEALERFRRASSLPELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQ 269

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +AK SA ++  +P  +  ++    PG+M+       G  LL  AAA  + GI ++  +
Sbjct: 270 TAQAKLSAQVVSIMPIALLVVLSGIDPGFMDPFFESGAGIALLVCAAAMEIAGIAIVSRV 329

Query: 183 INFDV 187
           ++ D+
Sbjct: 330 LDVDI 334


>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
 gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
          Length = 306

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 76/176 (43%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L  +
Sbjct: 129 RRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLDAA 188

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E + 
Sbjct: 189 LHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEVRL 248

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           SAWI+  LP  ++  +   +      + +DP G  LL  A      G   +  M  
Sbjct: 249 SAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304


>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
 gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
          Length = 318

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               +  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G
Sbjct: 135 RRTTRLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 194

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A 
Sbjct: 195 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 254

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SAW++G LP   + L+   SP +   ++++P GH +L +A    L+G  ++  +
Sbjct: 255 TSETRMSAWVLGLLPPASAVLMAIASPDFFQPVLHEPLGHKVLLIALGLELVGAFLLYRL 314

Query: 183 IN 184
             
Sbjct: 315 AK 316


>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
 gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
          Length = 306

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 76/176 (43%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + +   P  LD +VR +  G  V+ A    +G    P+    +R       G  L  +
Sbjct: 129 RRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGSVEQPLLEVLQRADSQVRSGKDLDAA 188

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + ++ R   L+E+   S VI++  + GG   + L  ++  +RD +  + ++ ALS E + 
Sbjct: 189 LHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTALSAEVRL 248

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           SAWI+  LP  ++  +   +      + +DP G  LL  A      G   +  M  
Sbjct: 249 SAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMAR 304


>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
 gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
          Length = 311

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 77/178 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K +   P  LD +VR    G  +  A    V  + +P+R    R       G+ L 
Sbjct: 132 RRHQKMVRQLPAFLDTMVRLTIVGNSLESAFQATVLTTEEPLRELLDRSNRLVQAGMDLE 191

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ +  R   LQE+   + VI V  + GG     L  ++  +RDR+  + ++ ALS E 
Sbjct: 192 HALVQKARVFRLQELELIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSET 251

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + SAWI+G LP  +   +   +      ++ DP G  LL  A     IG   +  +  
Sbjct: 252 RLSAWILGLLPIGLGVFMVIFNNRMFVTMLEDPLGKNLLIFAVVLEAIGAYWLYRLAK 309


>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
           [Stenotrophomonas maltophilia K279a]
          Length = 313

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
               K  A+ L   P+ LD +VR    G  +  A  V   Q+S P+R      +     G
Sbjct: 130 RRTTKLRAQLLHQLPDFLDNLVRLTALGNSLQAAFQVASMQTSAPLRGLLDTTVRYARSG 189

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L  ++S   +   +  +   S VI V  ++GG   + L  +   +RD +  + ++ A 
Sbjct: 190 MDLDRALSLAAQPYRMDVLKVLSVVIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAAT 249

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + SAW++G LP   + L+  +SP +   +++DP GH +L +A    L G  ++  +
Sbjct: 250 TSETRMSAWVLGLLPPASAVLMAISSPEFFQPVLHDPLGHKILLIALGLELFGAFLLYRL 309

Query: 183 IN 184
             
Sbjct: 310 AK 311


>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 287

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 88/187 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ +++R  +     P A+D IV +VR G P++ AV  +      P   EF R+   Q 
Sbjct: 101 IRYFLQRRWLQIESQLPYAVDQIVSAVRTGKPLAIAVNAVADTGQMPASREFERIAREQK 160

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+ L E++ R  R +P          + + ++ GG++SE L  +S+  ++   +  K+ 
Sbjct: 161 LGIGLVEALDRHGRNVPSLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKIT 220

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             S +A+ +  ++      +  +++F  P  ++ +  +  G ++  V A     G   MR
Sbjct: 221 TSSSQARMNFRVVNGGALFMMLMIFFGQPELIDKVFGNAIGIVIAIVGAILYATGFFWMR 280

Query: 181 LMINFDV 187
            M+   V
Sbjct: 281 SMMKVSV 287


>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 306

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 90/186 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I KR           L I   S+R+G+ ++ A+A  +G+ +  +  E +R+     
Sbjct: 119 LNAMISKRGELLAKQLHGCLIIWANSLRSGVSLAQAIAGSIGRVAPQINEELKRIKYDID 178

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S ++++ + +  +P+ E         +  QLGGNL+E   N+   + +R   +  ++
Sbjct: 179 LGFSSADALEKALVRIPVAEFKMVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLK 238

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + +AK  A + G +PF V  ++   SP Y+  +++ P G M+L ++   + +G   + 
Sbjct: 239 AHTTQAKLGAVVAGLMPFIVLIILKTMSPDYLKPMLDSPYGTMMLMLSVFLVFLGWFTIN 298

Query: 181 LMINFD 186
            +    
Sbjct: 299 KLSTIK 304


>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
 gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
          Length = 308

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGMVRLMSIGSAVPAAFQAASANTEPPLRTCLTSATQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPVGKMLMTAAFGLEVMGSLMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
 gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
          Length = 302

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 2/184 (1%)

Query: 3   HLIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
            +++KR    +F       L +I R+V AGL V  A++ +       +  EF R+ +   
Sbjct: 114 FVVRKRQQVEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAEAQDGLLGREFSRIEDQLA 173

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  +++     +P +   +F+  + +    GG L + L +LSR L D + M+ KV+
Sbjct: 174 LGHGMKHTLNEACVRLPYKAFRYFTIALVLNQNSGGQLRDILHSLSRTLHDNRTMQKKVK 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +L+ E + +A  +  LP  +  +V + +P    VLI    G  +L   A  ++IG + ++
Sbjct: 234 SLTAEPRMAARFLSLLPLGLLAVVAWVNPSLFGVLIETESGQSVLVYCAVSIVIGALSLQ 293

Query: 181 LMIN 184
           LM  
Sbjct: 294 LMTR 297


>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 312

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 85/187 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  +F++  P    I+  + +AGL +  A+ +   +   P   E  RV +   
Sbjct: 126 LNWQRSRRNERFINQLPELARILANATQAGLALRTAIGMAADELEAPAGEELARVADRLA 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+ ES+  +   +P +E+    + + + ++ GG +  +L NL+  L  RK  + +++
Sbjct: 186 IGHSIEESLGEITERLPSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIR 245

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               +   +A+++  +      LV    PG ++ +     G   + VA     +G +++R
Sbjct: 246 TQLSQVTVTAYLVPVMGLGSLLLVDAMMPGALDRMTGAVIGQTAVLVAIGLFTLGFVLIR 305

Query: 181 LMINFDV 187
            +   DV
Sbjct: 306 RLSKIDV 312


>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 84/182 (46%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++K   + +   P  +D +VR +  G     A  + +  +  P+R    R       G+
Sbjct: 59  RLQKVRRQLISQLPAYIDAMVRLITIGNSTQAAFQLAIATTQAPLRGHMERSAALVRAGV 118

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ +    + ++E+   ++++ +  + GG     L  ++  +RDR+  + ++ A+S
Sbjct: 119 DLDRALHQTANNVRVEEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMS 178

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V T +   +P Y   + ND  G ML+  +A   L+G   +  + 
Sbjct: 179 AETRLSAWILGLLPLGVGTFLVVVNPDYFLSMWNDDTGRMLIFSSAGLQLLGAFFLYRLA 238

Query: 184 NF 185
             
Sbjct: 239 RL 240


>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
 gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
           saccharolyticum WM1]
          Length = 245

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
             L KKR  +   +F   + ++   + AG  V +A +  V +          V  EF  +
Sbjct: 54  SELKKKRLQQLNLEFKEGILLLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHI 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    +  S+ +++S       L +V  F+ V +   + GG L   +++ + ++RD+  +
Sbjct: 114 VSQIRINRSVEQALSEFAGRSGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++   +    I+  +PF +   +  TSPG+ N++ N   G +L+ +  A  +  
Sbjct: 174 RQEILTMTASKQFEQKIMTMIPFFIVLYIDMTSPGFFNIMYNTGIGRILMTLCLAVYIGA 233

Query: 176 IMVMRLMINFDV 187
           I + R ++  ++
Sbjct: 234 IAIARHIMKIEI 245


>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 308

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 84/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+    + + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSITQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRMSAWILGLLPVVVGGIIIMFNAAYVMSMWRDPSGKMLMMAAFGLEVMGSLMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 308

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +K   + L   P  LD +VR +  G  V  A       +  P+R+    + + Q  G
Sbjct: 125 NRTRKMNERLLQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + R   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLTVGRQYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +++  +
Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 318

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
             F         ++  ++RAG+ +  A+  +  +  +P RSEFR+      LG +L  ++
Sbjct: 143 RAFNKQLVEVTQLLANALRAGMSIQQAIGEVSERVPEPARSEFRQTHHELLLGDNLPLAL 202

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R +  +++      I VQ Q GGNL   L  ++  L +R+ ++ ++ +L+ EA+ S
Sbjct: 203 HDMRRRVCSRDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFS 262

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           A ++  LP     ++  T  G    L     G +LLGV A   +    +++ +   +V
Sbjct: 263 ALVVMVLPIFFLLMIRDTPLG--EALFQTVIGWVLLGVFAVVQVAVYFLIQRVARIEV 318


>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
          Length = 308

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G
Sbjct: 125 NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLTSTTQLQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  +
Sbjct: 245 SAETRLSAWILGLLPVVVGGIIIMVNAPYVMSMWRDPSGKMLMMAAFGLEVMGSLILARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
 gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
          Length = 302

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 88/181 (48%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG 
Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGLLGREFSRIEDQLALGH 176

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  +++     +P +   +F+  + +    GG L E L +LSR L D + M+ KV++L+
Sbjct: 177 GMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVKSLT 236

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + +A  +  LP  +  +V + +P    +LI    G  +L   A  +++G + +++M 
Sbjct: 237 SEPRMAARFLSLLPLGLLAVVAWINPSLFVLLIKTETGQSVLIYCAVSIVLGAITLQVMT 296

Query: 184 N 184
            
Sbjct: 297 K 297


>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
          Length = 260

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K    ++  +    F +AL  +  +V+AG    +AV   V            +  EFR +
Sbjct: 69  KKCTARQQRELNYQFRDALTAMNVAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYI 128

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L + + E    + +   ++++  F+ V     + GG++++ +  ++R+L D+  +
Sbjct: 129 ESQLRLSVPVEELFLDLGKRSGVEDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEV 188

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A     K+   ++  +P  +   +  TSPG+++VL  +P G   + V      + 
Sbjct: 189 KKEIEATLAAKKSEQMVMSIMPAGIICYLKLTSPGFLDVLYGNPFGICAMTVCMVIYGLS 248

Query: 176 IMVMRLMINFDV 187
             +   +++ +V
Sbjct: 249 YWLGVKIVDIEV 260


>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 307

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 75/181 (41%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  +  D  P  LD +VR +  G  ++ A       +S+P+R    +         
Sbjct: 125 RADRRRGRMFDQLPEMLDTMVRLITIGNSMAAAFQAASANTSEPLREVVEKAAHLSRSTQ 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++ + R    +E+   + V+ V  + GG     L  ++  +RD    + ++ A S
Sbjct: 185 ELDAALANVARQYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAAS 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAW++  +P  ++  +  T+      + +DP G  +L  A    L G   +  M 
Sbjct: 245 AEIRLSAWVLALMPLGIACYIMLTNNAMFMDMWDDPLGFKMLMAALGLQLAGSYWLYRMT 304

Query: 184 N 184
            
Sbjct: 305 K 305


>gi|323694363|ref|ZP_08108536.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
 gi|323501603|gb|EGB17492.1| hypothetical protein HMPREF9475_03400 [Clostridium symbiosum
           WAL-14673]
          Length = 257

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +  +       +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G +++          
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 176 IMVMRLMINFD 186
             +   +++ +
Sbjct: 246 CFLSFKILDIE 256


>gi|225572861|ref|ZP_03781616.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039787|gb|EEG50033.1| hypothetical protein RUMHYD_01052 [Blautia hydrogenotrophica DSM
           10507]
          Length = 247

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 87/192 (45%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           +  I+++  +    F + LD +  +++AG  V +A+++   +          +  E R +
Sbjct: 56  QQKIREQQRELNYQFKDMLDSLNVTLQAGYSVENAISLCARELERLYGREADLTRELREM 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   L + +      +      ++V  F+ V     + GG++ + L   +++L D+  +
Sbjct: 116 EDKLKLSVPVERLFMDLGSRSHSEDVENFAVVFQTAKRSGGDMRKILEKSAQMLGDKIEV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++A+    K+   ++  +PF +   +  TSPG++ VL  +  G  ++    A  L  
Sbjct: 176 KKEIEAVLTAKKSEQRLMSVMPFGIILYMSLTSPGFLEVLYGNLFGVAVMTGCLAVYLFA 235

Query: 176 IMVMRLMINFDV 187
             +   +++ +V
Sbjct: 236 WWLGNRIVDIEV 247


>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
 gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
           WAL-14163]
          Length = 257

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           K L  +R  +    F  A+ I+  S+ AG  V +A A  + +  +       +  EF  +
Sbjct: 66  KELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREGMITKEFSYI 125

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +  ++   ++       L+E+  FS + +V  +  G L   + +   ++ DR  +
Sbjct: 126 AHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTVHVISDRLQV 185

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++ E +    I+  +P+C+   + F+SPG+   +     G +++          
Sbjct: 186 REEILTMTAEKQFEQKIMNLVPYCIVIYIEFSSPGFFRQMYGTAAGRVVMTGCLLIYCAS 245

Query: 176 IMVMRLMINFD 186
             +   +++ +
Sbjct: 246 CFLAFKILDIE 256


>gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 278

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFR 53
           ++ LI KR A+    F +AL  +  S+  G  +  A    +        D    +  EF 
Sbjct: 85  VQDLITKRKAELQLQFKDALYSLTSSLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFG 144

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            +     L   +  ++        L+++  F+ V+ +  + GGNL + + N S IL D+ 
Sbjct: 145 YICRKIELNEPVETALLDFAERSGLEDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKI 204

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +  +++ L  + K    I+  +P     LV F   GYM+ L    +G++L+ +A   ++
Sbjct: 205 EISQEIELLLTKQKYEQKILNIMPIVFIGLVKFGGSGYMDSLYTSIKGYLLMALALGILI 264

Query: 174 IGIMVMRLMINFDV 187
              +V + + +  V
Sbjct: 265 AASVVSKKIFDIKV 278


>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
 gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
           20476]
          Length = 332

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 84/185 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            H   +   +  +  P+AL  +    +AGL +    A    ++  P+   F +V     L
Sbjct: 146 SHAADEEQNRLRELVPDALRCMESCFQAGLSLPQTFAETARETEPPLSQTFAQVSHDIEL 205

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ E++ R      L E++F +  + VQ   GG+ +  L      +     ++  ++ 
Sbjct: 206 GHSVDEALDRFRLGSGLPELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRV 265

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + +AK SA I+ ++P  +  ++   SP + N       G  LL +AA+ +  GI+++R 
Sbjct: 266 QTAQAKLSAQIVSAMPLVLVGVLSLVSPHFFNPFFETGTGLALLAMAASMLAGGILIVRR 325

Query: 182 MINFD 186
           M+  D
Sbjct: 326 MLAVD 330


>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 304

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRRVI 56
           L+++R  +    F  AL  +  S+ AG  V +A    +        DP   +  EF  ++
Sbjct: 115 LMRRRKEEMNQQFKQALQCLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMV 174

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G  +   I        L++++ F+ V     + GGNL E +   S ++ ++  + 
Sbjct: 175 RRLDNGEPIEACILGFAERAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIV 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +  + K  + I+ + P  +  ++ F+SP YM  L     G +++ +    + + +
Sbjct: 235 QEISVMVAQKKFESKIMLTAPVAIIGILCFSSPDYMKPLYE-GAGRLIMTIGLTVLFLCL 293

Query: 177 MVMRLMINFDV 187
            + + +++  V
Sbjct: 294 WITKKIMDIKV 304


>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
 gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
          Length = 294

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 96/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   L
Sbjct: 109 RHFEQLAINEFNTQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+   +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ 
Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R 
Sbjct: 229 ITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288

Query: 182 MINFD 186
           +  F 
Sbjct: 289 LTKFK 293


>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 282

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 84/169 (49%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  L  +  ++RAG  +  A+  +   +  P+  E   ++  Q LG+S  +++ R+  
Sbjct: 110 QLPAGLLSLASALRAGASLPAALRQLADLAQPPLAQEIGLMLREQRLGVSFDDALHRLEC 169

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L  V   +    V    GGNL++ L  +++ LR +   + +++AL+ + +  AW++ 
Sbjct: 170 RVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEGRLKALTAQGRMQAWVLS 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +LP  ++ ++Y   P  M  L     G +L+ +  A  ++G  ++R ++
Sbjct: 230 ALPLVLAVVLYLLRPEQMARLWQTEAGWILIALVMALQVLGWFLIRRIL 278


>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 313

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 85/186 (45%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I  R +  +   P  LD +VR+ R G  +  A+      +  PVR  F +++  Q 
Sbjct: 128 IRYRIGLRRSAAILALPGFLDAVVRASRVGASLPAALLSATKDAHGPVREVFNQIMRRQQ 187

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  + +   +QE++  +TV+ +  + GG     L  ++  LR R   +A+  
Sbjct: 188 SGTPIDQAMLTVGKRYQMQELAIIATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFN 247

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALS E +  A I+  +   ++  +   +  Y+  +     G MLL      ++ G++++ 
Sbjct: 248 ALSAETRLGALILSLMIPGLALYIVLMNHSYLQGMWAVSTGRMLLVAGGTLLVTGVVLLN 307

Query: 181 LMINFD 186
            M    
Sbjct: 308 RMAKLR 313


>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 287

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS----SDP---VRSEFRR 54
             L+ +R  +    F  AL  +  S+ AG  V +A    +        DP   +  EFR 
Sbjct: 96  SFLLVRRKERLQLQFKEALYSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRI 155

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G  L +++  + +   L +++ FS V +V  + GG+L E +   S+ + ++  
Sbjct: 156 VKYRLDNGEPLEQALRSLAKRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLE 215

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L  + +  A I+ ++PF     +   +P YM  L     G++LL +    +  
Sbjct: 216 VKQEISVLLAQKRFEARIMMAVPFAFLGFLSAFAPDYMKPLYG-GGGYVLLTIGLVVLSF 274

Query: 175 GIMVMRLMINFDV 187
              ++  ++   V
Sbjct: 275 CFWLIHRIMQIRV 287


>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
 gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
          Length = 305

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 78/177 (44%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P+ +D +VR +  G  V+ A    +    DP+    +R       G  L  
Sbjct: 127 RRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDDPLLEVLQRAEALMRSGKDLDS 186

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ ++ R   LQE+   S+VIS+  + GG     L  ++  +RD +  + ++ ALS E +
Sbjct: 187 ALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSAEVR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            S WI+  LP  +   +   +      +  DP G  +L   A   ++G  ++  M  
Sbjct: 247 MSVWILSLLPIGLGLFIIVFNNDLFMGMWRDPLGFKMLIGGAMLQVVGTYLLFRMAR 303


>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
           cellulolyticus CD2]
          Length = 305

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I KR     +     LD +     AG  +  A+   + +S DP++S   +V     
Sbjct: 112 LKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLTALDYSIEKSRDPLKSVLEKVSANIK 171

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKV 119
              SLSE+   + + +P+ E    S  ISV S++          N+S  +++  ++   +
Sbjct: 172 KSQSLSEAFENVTKQIPIPEFKMVSMAISVHSEITNEGWPRTFENISSQMKENGDLFNTI 231

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A + E+K +++IIG +P  +  ++    P Y+   +  P G +   +A    L G+ ++
Sbjct: 232 DASNTESKINSYIIGLMPLAMFIVIRLMQPEYVANSLESPIGKISYVIAGLLSLSGMYLV 291

Query: 180 RLMINF 185
           R + N 
Sbjct: 292 RRISNV 297


>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 307

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 94/186 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RTAKF++  P    ++  +  AGL +  A+A++  +  +P RSEF +V     
Sbjct: 121 VRRSQQRRTAKFVNQLPELARLLANASHAGLSLPTAIAMVSDELGEPARSEFAQVENRLR 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +  ++  +EV+   + + V ++ GG+L  AL  ++  L +RK  + +V 
Sbjct: 181 FGASLQTALDELASHVRSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVT 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  ++ A+A++I  +   +   +    PG + ++ +   G + L    +   +G +V+R
Sbjct: 241 TILSQSLATAYLIIIIGLGLLVALNMFEPGTVELMTHSLVGRICLIAGLSLFAVGFVVIR 300

Query: 181 LMINFD 186
            M    
Sbjct: 301 QMTKVK 306


>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
 gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 96/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   L
Sbjct: 109 RHFEQLAINEFNMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+   +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ 
Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R 
Sbjct: 229 ITSESRTSAKVLAILPPALIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288

Query: 182 MINFD 186
           +  F 
Sbjct: 289 LTKFK 293


>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 269

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI ++  + L +F  A+ I+   + AG  + ++V   + +        + +  EF  +
Sbjct: 78  KELIVEKKRRLLIEFKEAVMILSSLLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYI 137

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +A+   ++ D+  +
Sbjct: 138 CQLIYMNISVERAFDDLAYRSHCEDIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRI 197

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++  LP  +   + F+SPG+ N++     G M + V     L  
Sbjct: 198 KEEIITMTAAKRFEQKVMNILPLLIVLYIDFSSPGFFNIMYTTIIGRMCMSVGLTVYLFA 257

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 258 IYISKRLLNIEV 269


>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 88/185 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  ++R    +   P  +D ++R+V AG  +  A+      S  P+     +V     
Sbjct: 120 LYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALLTATADSRLPLGEVLEQVTREIK 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  ++S  +R   L+E+   +  I V  + G ++ E L +L  +++  +  + + +
Sbjct: 180 LGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYGSSIQELLRSLVTLIQQEETSRQEFR 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           AL+ E++ +AW++G +P  +   +  T+P Y   L +DP G  +L +A      G++ + 
Sbjct: 240 ALTGESRLTAWVLGLMPLLLVGFLLLTNPEYPAHLWHDPAGRTILLIALLLQSGGVLALW 299

Query: 181 LMINF 185
            +   
Sbjct: 300 RLTRV 304


>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
 gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
          Length = 281

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 101/176 (57%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL  +  ++RAG+ VS A+  IV  S  P+  EF  ++  Q LG+S   +++R
Sbjct: 106 FEQQLPGALLALASALRAGVGVSTALRHIVDHSEPPLAQEFGLMLREQRLGVSFDAALAR 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + +P +  +  +  + V +  GGNL+E L  ++R LR+R  ++ KV+AL+ + +  AW
Sbjct: 166 LSQRVPSEASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+G+LP  ++ ++    P  M +L + P G  +L V A     G++++R +++ D+
Sbjct: 226 IVGALPLLLAAVLDRMEPDAMAILWHTPLGWAVLAVVAGLETAGVLLIRRIVDIDI 281


>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
           BTAi1]
 gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
           sp. BTAi1]
          Length = 329

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 103/184 (55%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    K+    F+D FP+A+D + R +RAGLP++ A+  +    S PV   F  + +   
Sbjct: 141 LSREQKQTERMFVDLFPDAVDTVARMLRAGLPITVAMRTVAVDGSPPVSRVFGLIADELR 200

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+ L E++    R + L +  FF+  +++Q   GGNL+  L +LS I+R R+  + K +
Sbjct: 201 IGVPLEEALDTNSREIGLPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAK 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + E + +A+ +G++P   +  +    P Y+  L  DPRGH++L +A A +L+  + MR
Sbjct: 261 AATGEIRLTAYTLGAIPILTTGALLVVQPRYLTPLWTDPRGHLILVLAGALLLLSFLTMR 320

Query: 181 LMIN 184
            M+ 
Sbjct: 321 KMMR 324


>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
 gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
          Length = 294

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 96/185 (51%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +H  +    +F    P+ +D + R+V+ G P+ D    +  Q     +  F  + +   L
Sbjct: 109 RHFEQLAINEFSMQMPDIIDSMERAVKVGAPLHDIFFALSEQYQGSAKRLFLAMHDRLKL 168

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+   +    + MP QE  F +T++S+QS+ GG LS  L  L + LR+R  M+++V+ 
Sbjct: 169 GHSVERVMQFAAQQMPSQEFRFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRT 228

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++ E++ SA ++  LP  +  ++Y ++  + + L+ D  G  +L      ++ G++++R 
Sbjct: 229 ITSESRTSAKVLAILPPVLIGVLYGSAKEHFDYLLRDATGQWILLYVVLSVVTGLLLIRQ 288

Query: 182 MINFD 186
           +  F 
Sbjct: 289 LTKFK 293


>gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
 gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
          Length = 220

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K  I+KR   F   F  A+  +  ++  G  V +A+   +          + +  EFR +
Sbjct: 29  KQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREALKDLQIIYKKDELIVREFRYM 88

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + +++ + +    +    ++V  F TV  +  + GG++   + N  + + ++ ++
Sbjct: 89  VRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSGGDMIAIIRNTVQQMSEKADI 148

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  +    K    ++ ++PF +   + F+ P +M VL  +  G +++ +     +I 
Sbjct: 149 RREIGTIIASKKLEFKVMSAIPFGMICYMKFSFPEFMGVLYGNAAGVVIMTICFLGYVIA 208

Query: 176 IMVMRLMINFDV 187
             + + ++  +V
Sbjct: 209 YEIGKRIVEIEV 220


>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 302

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 88/182 (48%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              K++  +F       L +I R+V AGL V  A++ +       +  EF R+ +   LG
Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGLMSREFSRIEDQLALG 175

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +++     +P +   +F+  + +    GG L E L +LSR L + + M+ KV++L
Sbjct: 176 HGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKVKSL 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + +A  +  LP  + TLV + +P    +LI    G  +L   A  +L+G + + LM
Sbjct: 236 TSEPRTAARFLSLLPLGLLTLVAWINPSLFLLLIETEPGQSVLIYCAVSILVGAITLHLM 295

Query: 183 IN 184
             
Sbjct: 296 TK 297


>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
 gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
          Length = 297

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 92/185 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R    ++  P  +D + +    G  ++ A+   +  +   VRS    V     
Sbjct: 111 VRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPAVVRSYIAPVARRLE 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K +++
Sbjct: 171 LGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A   EAK S  ++  +P     ++   +P Y++  + DPRGH L  VA     +G++VMR
Sbjct: 231 AAISEAKISGRVLIVMPLVAMAVLVAMNPDYIDFFLRDPRGHRLAVVALVLQGMGMLVMR 290

Query: 181 LMINF 185
            ++  
Sbjct: 291 RVMRL 295


>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
 gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
           DSM 15981]
          Length = 308

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 86/191 (45%), Gaps = 6/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56
            L ++R  +   +F + + ++   + AG  + +AVA    +          +  EF  + 
Sbjct: 118 DLKRQRLCRLNLEFKDGILVLASFLSAGYSIENAVAASGRELTLLYGADGLMAGEFEEMA 177

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               L  ++      +     L++V+ F+ V +   + GG+L E +++ + ++RD+  ++
Sbjct: 178 RGLRLNRTVESVFLDLGGRSGLEDVNNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQVQ 237

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  ++        I+  +P  +   +  TSPG+ +++     G +++    A   I +
Sbjct: 238 EEIHTMTASKAFEQKIMSLVPVLIVLYIDLTSPGFFDIMYRTMAGRLVMSGCLAVYGISL 297

Query: 177 MVMRLMINFDV 187
           ++ R ++  ++
Sbjct: 298 LLARRILQVEI 308


>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
 gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 83/182 (45%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +HL K+R  K     P  L  +   +R+G  V  A+  + G    P+  E   ++  + +
Sbjct: 46  RHLKKQRYIKIEKQLPGMLIGLSNQLRSGTSVGAALKNLKGTLLAPLGQEVDELLRQEKV 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L++ +    R +P+  +      + +  + GG  S+    L+  L+ ++++K +   
Sbjct: 106 GKPLTDCLEDWQRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQIT 165

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           L+ +A+  A I+  +P  +  L+ +    +  +      G  +L VA   M+IG  +++ 
Sbjct: 166 LTSQARMQAKILVMMPVGLYFLLSWMKSEHTALFTESRVGIFMLIVALILMIIGGWMVKR 225

Query: 182 MI 183
           ++
Sbjct: 226 IM 227


>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 292

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           + +  KK    F + +  AL  +  S+RAG+ +  AV  +         ++ EFR++   
Sbjct: 101 VSYTEKKHKKNFEERYARALRQLSSSLRAGMTLQQAVEDLCKCPFIHYEIKKEFRQINSD 160

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG S+SE+   M   +P  +V    + I +QS +GG+ +E++  ++  +  R  ++ +
Sbjct: 161 IQLGFSISEAFGHMAERIPTADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKE 220

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++ L    K +   +  LP  +   +Y++SP Y   L +   G ++  +A   M+IG  +
Sbjct: 221 IKTLFASTKMTIIGMDILPAIIILFLYYSSPMYFRPLFSTLIGRLVFVLAIILMVIGSYI 280

Query: 179 MRLMIN 184
            R  +N
Sbjct: 281 DRKFLN 286


>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 306

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 91/186 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R   F+   P    ++  +  AGL ++ A+A+   +   P   E  RV     
Sbjct: 120 LSRAQQRRNEAFIGQMPELARLLSNATSAGLSIASALALAANELDAPAGPEMARVASRMR 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L  +I  +   +P +EV+  ++ + V ++ GG+L  AL +++  L +RK ++ +V+
Sbjct: 180 FGEDLDTAIGELTARLPSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVR 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +  ++ ++ +++  + F +  L+    PG +  +  D  G   L V ++  + G +++R
Sbjct: 240 TVLAQSTSTGYLVIGMGFALLFLLNIIRPGTVEAMTEDWLGRGALVVGSSLFVGGFLLIR 299

Query: 181 LMINFD 186
            M  FD
Sbjct: 300 RMTRFD 305


>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
 gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
          Length = 301

 Score =  128 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 83/187 (44%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K R A+F +    +L ++  ++RAG  +  A+  +   S DP++SE         
Sbjct: 114 VRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDDPLKSELLACAGAMQ 173

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +  ++  M +    +++      ++   ++GG+L+++L  +   +  R +++  ++
Sbjct: 174 IDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGDTIDARLSLRRHIE 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + +    AS   +  +   +  ++    P   +    DP G  +L V   F   G +++ 
Sbjct: 234 SETSSVIASMKALIVMLLILFAIIMVGIPQAYDFYTQDPLGIPVLIVVVLFAATGSVIIY 293

Query: 181 LMINFDV 187
            M + DV
Sbjct: 294 KMADIDV 300


>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 291

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 77/178 (43%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L   + AKF   F   ++ +   +  GL +  ++      +   ++ +   +++   +G
Sbjct: 107 DLAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEHADPYIKKQSSLLLQRMSMG 166

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                S + ++     + V  F+  I   +Q   +L++ L ++  ++  R   + +++A 
Sbjct: 167 SDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDMLKSVCNMMSLRTLDRQQLKAK 226

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               K +A   G LP+ +  L  +T P +   L+NDP G   + VA    L G + +R
Sbjct: 227 LSGTKYAAVFSGFLPYALIPLFSYTDPTWFEPLLNDPNGIAFITVALLCQLFGFLWLR 284


>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 245

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
            +L K+R  +    F   + ++   + AG  + + + + + +        + +  EFR +
Sbjct: 54  SNLKKERARRLELQFKEGIQVLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRIL 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   +     E      R   +++V  F+ V+S   + GG L E +   + I+RD+  +
Sbjct: 114 SDGIRMNRPAEELFMDFGRRSGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  +         I+  +PF +   +  TSPG+ +V+     G  ++ +  A     
Sbjct: 174 KEEIHTMLASRIFEQRIMNLIPFLIVLYIDLTSPGFFSVMYGTWMGRSVMTMCLAAYAGA 233

Query: 176 IMVMRLMINFDV 187
           +++   +++ +V
Sbjct: 234 LVLAGKILDIEV 245


>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
 gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
          Length = 292

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 91/174 (52%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + +   P+ ++ + R ++ GL ++ AV      ++ P++   +RVI  + +G+ L ++
Sbjct: 115 KLQLVQQLPSFVEQVNRRIKVGLSIAQAVEQSASATNAPLKDVLQRVIHRKAVGVELQDA 174

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             +      +       ++ S+ ++ GG+++++L +L ++LR +   + ++++++ E + 
Sbjct: 175 FEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGETRI 234

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +AW+IGS P  VS  +   +P  +  +     G   L +  +  L+GI+++  M
Sbjct: 235 TAWVIGSAPLLVSAYMLTQNPELLINMWYSEGGRQALILGISLQLLGIILIWRM 288


>gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 245

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 78/191 (40%), Gaps = 6/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56
            L  +R  +   +F   + I+   + AG  V +A +  + +       S  +  EF  + 
Sbjct: 55  DLKDQRLKRLNLEFKEGILILSSFLSAGYSVENAFSASIRELAVMYGASGMMVLEFSHME 114

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               +   + + +        L +V  F+ V +   + GG L   + + S ++RD+  ++
Sbjct: 115 GQIRMNRPVEQVLMEFGDRSGLDDVRNFAEVFAAAKRSGGELVSIINHTSGVIRDKIQIQ 174

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  ++   +    I+  +PF +   V  +SPG+ +++     G  ++    A      
Sbjct: 175 EEIATMTAAKQFEQKIMNLIPFFLVLYVDVSSPGFFDMMYQTGAGRWIMTGCLAIYAAAY 234

Query: 177 MVMRLMINFDV 187
           ++   ++  +V
Sbjct: 235 VLAGRILRIEV 245


>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 270

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRV 55
           +L+++R       F  AL  +  S+ AG  V +     +           + V  E   +
Sbjct: 80  YLLRRRRENLSLHFKQALYSLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAII 139

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G  + E++    R   ++++  F+ V +   + GG+L E +   S ++ ++  +
Sbjct: 140 CARMDYGQPIEEALLDFSRRAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEI 199

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             ++  +  + +  A  + + P      + FTSP YM  L +   G ++ GVA     I 
Sbjct: 200 TQEISVMIAQKRFEAKAMLAAPVLFLLFMQFTSPDYMRPL-HHGAGLLISGVALLLYAIC 258

Query: 176 IMVMRLMINFDV 187
             +M  +I+  V
Sbjct: 259 AWLMLKIIDIRV 270


>gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
 gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
          Length = 248

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K  I+ R  +    F +AL+ +   + AG  + + +                +  EF  +
Sbjct: 57  KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                  + L E +  +     ++++  F+ V+    ++GGN+   L      + +R  +
Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A+    K    I+  +P  +   +  TSP +++VL  +P G  ++          
Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNPVGICVMTACLLLYTAA 236

Query: 176 IMVMRLMINFDV 187
                 +   DV
Sbjct: 237 FQWGVRLTQIDV 248


>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
 gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIE 57
           L KKR    +  F   L I+   + AG  + +A+   +    + +        E +++  
Sbjct: 35  LRKKRQEVLVSQFKEMLSILSAYLSAGYSLENALFACIPDLENLLGKKCYMVEELKQIKR 94

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   L E++S+      + ++  FS +  V  + GG+L + +   S I+RD+  +  
Sbjct: 95  SLSMNRPLEEALSQFALRSGVDDIHNFSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITE 154

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  L+   +    I+  +PF +   +  +SP +  +L +   G  ++       L+ I 
Sbjct: 155 EIITLNASRRFEQKIMNGVPFFMIFYLNASSPEFFRILYSTIMGRGVMSFCLCIYLLAIY 214

Query: 178 VMRLMINFDV 187
           + + +I   V
Sbjct: 215 LSQKIIAIPV 224


>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
 gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
          Length = 319

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 137 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 196

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 197 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 257 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 316

Query: 184 N 184
            
Sbjct: 317 K 317


>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
 gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
          Length = 281

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 87/171 (50%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
 gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
          Length = 281

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 87/171 (50%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P AL  +  ++RAG  ++ A+  +V     P+  EF  ++  Q +G+S   +++R+ R  
Sbjct: 111 PGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRA 170

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             + ++  +  + V +  GGNL+E L  +++ +  R  ++ +V+AL  + +  AWI+G+L
Sbjct: 171 SFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGAL 230

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +  ++    P  M  L +   G   L +       GI ++R ++  DV
Sbjct: 231 PPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV 281


>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
 gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
           UW551]
          Length = 308

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 126 RTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 186 DLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 245

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 246 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPAGKMLMMAAFGLEVMGSLMLARLA 305

Query: 184 N 184
            
Sbjct: 306 K 306


>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 289

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 93/182 (51%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L   ++AK      +A+D+++ ++ AG  V+ A+A  + +SS P++ +   ++    LG
Sbjct: 105 YLATMKSAKLERQLADAIDLMIGALGAGTGVTSAMAAAIEESSYPLKGQLEDLLARIRLG 164

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                    + + +PL+    FS+ ++V  ++GG+L+  LA+  R +RDR  +  ++Q+ 
Sbjct: 165 DDPQAVFRSLSQRIPLETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSN 224

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +++ S   I  L + ++ +V+  SP  M   +N   G  ++  +     +GI+ M  +
Sbjct: 225 IAQSQVSTVFILLLTYFIAAVVWRNSPEQMQAFLNTDMGGSVVAGSMVLQAVGIVWMSAI 284

Query: 183 IN 184
             
Sbjct: 285 SK 286


>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
 gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
          Length = 318

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 82/181 (45%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + +   P  LD +VR +  G  V  A       +  P+R+      + Q  G 
Sbjct: 136 RTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAASANTEPPLRTCLALTTQLQRAGK 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ ALS
Sbjct: 196 DLDAAVLAVGQLYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQKELLALS 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+G LP  V  ++   +  Y+  +  DP G ML+  A    ++G +++  + 
Sbjct: 256 AETRLSAWILGLLPVVVGGIIIMFNATYVMSMWRDPVGKMLMMAAFGLEVMGSLMLARLA 315

Query: 184 N 184
            
Sbjct: 316 K 316


>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 300

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 75/180 (41%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  K++   F + FP  L I      +G+ V++ +     +    +  E   +     +G
Sbjct: 116 YYKKQKKIYFTETFPELLLIFNMGSVSGISVNEILKKAGQEIKGGLGKECDLIFRRLSIG 175

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            +++       +     E   F  ++ +    GG L E +  L++++ +   M+ +  A+
Sbjct: 176 ENINTVFYDAYQRFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAM 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + E + S W++  +P       YF +P     + +   G +++    A   +GI +MR M
Sbjct: 236 TGEIRMSIWVVTLIPVIFFAFSYFMNPLSFQKIFSYEIGKIIIYYCLASNTLGIFIMRYM 295


>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 205

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +KR  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 13  LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIAYIA 192

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205


>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 227

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI  +  K + +F  A+ II   + AG  + +++   + +        + +  EF  +
Sbjct: 36  KELINVKKRKLVLEFKEAIMIISSLLSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYI 95

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +  ++ +S+  +   +      +++  F+ V+ +  + GG L   +++   ++ D+  +
Sbjct: 96  NQLIYMNISVERAFDDLAYRSHSEDIRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRI 155

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  ++   +    ++   P  +   +  +SPG+ N++     G + +       L  
Sbjct: 156 KEEIITMTAAKRFEQSVMNVFPLFIVLYIDISSPGFFNIMYTTIIGRICMSFGLIMYLFA 215

Query: 176 IMVMRLMINFDV 187
           I + + ++N +V
Sbjct: 216 IYISKGLLNIEV 227


>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 264

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRR 54
           K +I+KR  +    F + L  +  S+ AG  +  +   ++   S         +  E   
Sbjct: 72  KEIIEKRKNELNLQFRDMLYSLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEY 131

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    +  ++  ++        L+++  F  V+    + GGN+ + + N S I+ D+  
Sbjct: 132 IVRKIEMNETIESALEDFAARSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIE 191

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  L    K    I+  +P  +   +  ++  YM  + +D RG +++ ++ A ++I
Sbjct: 192 VKEEIDTLLASRKFEQKILALMPVMLILFLSLSTGDYMYPVFHDLRGRLVMTLSLALIII 251

Query: 175 GIMVMRLMINFDV 187
              + + ++N  V
Sbjct: 252 AYFISKKIMNIKV 264


>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
          Length = 301

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 71/151 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++KR  + +   P+ LD IVR V  G  V  A    +  +  P+R     V     
Sbjct: 151 LASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQATLQTTDAPLRGCLDHVSRMLR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++  +     ++E     +V+ +  + GG     L  ++  +RD +  + ++ 
Sbjct: 211 SGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELV 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           A+S E + SAW++G+LP  + + V  T+P Y
Sbjct: 271 AMSAETRLSAWVLGALPVGIGSFVIATNPKY 301


>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 299

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +  P  L ++   +RAG  +  AV  +V Q+  P+R EF RV     L +   +++  + 
Sbjct: 125 EQLPETLMLMASVIRAGGTLYQAVQTVVQQAPQPMRGEFERVARAMQLQVPAGDALGLIR 184

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             + L E +       V  + GG+L   L ++SR L + +     ++A   E KASA ++
Sbjct: 185 DRVGLGEFTSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASARLV 244

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            ++P  V  LV + +P Y    + DP G +LL  +   M +G +++R + +  
Sbjct: 245 TAVPLVVVALVSYQNPAYFGEALTDPLGRVLLLGSLCAMALGWLLIRQITDVR 297


>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
 gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
           29176]
          Length = 197

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ +  K+  +F   F +++ I+  +++AG    +A+                +  E+  
Sbjct: 5   LEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYEI 64

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    + + + + +S     +  ++V  F TV +   + GG+    + +  +++ ++  
Sbjct: 65  MIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKME 124

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+  +PF +   +  T   ++ VL  +P G +++ +  A    
Sbjct: 125 TEKEIQTMIASKKLEFEIMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMSICLALYFT 184

Query: 175 GIMVMRLMINFDV 187
             +  + MI  +V
Sbjct: 185 AYIWGKKMIKIEV 197


>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
 gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
          Length = 165

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 70/161 (43%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +  +G  ++  +     +    + +EF  +    +LG +     +   R     E  
Sbjct: 1   MNMAASSGANLNQILERCGKEIQGELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYAEFH 60

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
           FF++VI +  + GG LS+ +  + + + +   +K +   ++ + + +  ++  +P   + 
Sbjct: 61  FFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMTTNVVSLIPIVFTA 120

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            +Y+  P  +  L +   G  ++       ++GI ++R MI
Sbjct: 121 FLYYIDPNSIETLWSQDVGKEIISYIVISEILGIFIIRNMI 161


>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 249

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 57  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 116

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 117 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 176

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 177 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENATGRCFMTICLIVYIA 236

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 237 AYSFGRKIIHIEV 249


>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 308

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 83/182 (45%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +K   + L   P  LD +VR +  G  V  A       +  P+R+    + + Q  G
Sbjct: 125 NRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAASANTEQPLRNCLTAITQMQRAG 184

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L  ++  + +   + E+   S+V+ +  + GG     +   +  +RDR+  + ++ AL
Sbjct: 185 KDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFAL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           S E + SAWIIG LP  V  ++   +  Y+  +  DP G  L+  A    ++G +++  +
Sbjct: 245 SAETRLSAWIIGLLPVVVGGVIIMFNAAYIMSMWRDPFGKTLILTAFGMEVLGAVMLARL 304

Query: 183 IN 184
             
Sbjct: 305 AK 306


>gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
           27755]
 gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
           27755]
          Length = 230

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 76/193 (39%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRR 54
           +   IK++  +FL  F   +      +  G  V +AV   + +          +  E   
Sbjct: 38  LDECIKRKEQEFLVQFKELIQTFSSLLNTGYSVENAVKESLKEMQIFYSDDAAILRELEI 97

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + + + +++  +     L +V  F+ V     + GGNL   + N +  + D+ +
Sbjct: 98  MVRQIRVQVPVEQAVEELSERTKLPDVESFAGVFVTAKRSGGNLMSIIRNTADQIGDKID 157

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    K    ++  +PF +   +  + P +M  L  +  G  ++       L 
Sbjct: 158 VKREIDTMLAAKKYEFQVMSVIPFGIVLYMTVSFPEFMGNLYGNIAGRGVMTGCLIIYLG 217

Query: 175 GIMVMRLMINFDV 187
              + R +I  +V
Sbjct: 218 AYGLGRKIIEIEV 230


>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
 gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
          Length = 205

 Score =  124 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ L +K+  +F   F NA+  +  +++AG  V +A+       +        +R EFR+
Sbjct: 13  LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++    + +     + +    M  ++   F TV S     GG+    + N  +I+  + +
Sbjct: 73  MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + ++Q +    K    I+ ++PF +   +  T   +++VL  +  G   + +     + 
Sbjct: 133 TEQEIQTMFASKKLEFEIMCAVPFFIILYMKLTFGEFLSVLYENAAGRCFMTICLIVYIA 192

Query: 175 GIMVMRLMINFDV 187
                R +I+ +V
Sbjct: 193 AYSFGRKIIHIEV 205


>gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
           15053]
 gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
           15053]
          Length = 251

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 83/192 (43%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K  ++++++ F   F +A+  +  ++  G  V +A      +       +D +R E   +
Sbjct: 60  KECLRRKSSSFQLQFKDAIQSLSSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHII 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + + + + +      +  ++V  F+ V +   + GG++   + N +  + D+  +
Sbjct: 120 VSQIRVNVPMEQIMEEFAERVRQEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQIGDKVEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++  +    +    ++ ++P+ +   +  + P +M  L  +  G  ++ V  A  +  
Sbjct: 180 KREIDTILASREYEFKVMSAVPYVIIGYMSLSFPEFMQNLYGNVLGTGVMTVCLAAYIGA 239

Query: 176 IMVMRLMINFDV 187
             + + +I  +V
Sbjct: 240 CCLGQKIIRIEV 251


>gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 248

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 72/192 (37%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K  I+ R  +    F +AL+ +   + AG  + + +                +  EF  +
Sbjct: 57  KQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKDLERLYGEKAEMAREFAYI 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                  + L E +  +     ++++  F+ V+    ++GGN+   L      + +R  +
Sbjct: 117 ERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGNMRGILNRCISSIEERIQV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A+    K    I+  +P  +   +  TSP +++VL  +  G  ++          
Sbjct: 177 KKEIDAVLASRKMEQKIMSFIPLGIILYMQITSPEFLSVLYGNSVGICVMTACLLLYTAA 236

Query: 176 IMVMRLMINFDV 187
                 +   DV
Sbjct: 237 FQWGVRLTQIDV 248


>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 307

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 73/181 (40%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              KR  + +   P  LD IVR +  G  +  A       + +P+R              
Sbjct: 125 RADKRRRRMIGQLPAFLDNIVRLITIGNSMGAAFQTAAATTDEPLREVVETAASLSRSAK 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  ++ ++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ A S
Sbjct: 185 ELDAALVQVSRMYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASS 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+  LP  ++  +   +      L  DP G  +L  A    + G   +  M 
Sbjct: 245 AEVRLSAWILALLPVGIAGFIIVANNKLFMGLWEDPLGFKMLLTAVVLQIGGCYWLYRMA 304

Query: 184 N 184
            
Sbjct: 305 K 305


>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 83/189 (43%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58
           +KKR  +    F   +  +  ++ AG  V +A    + +          +  EFR ++  
Sbjct: 57  MKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALRELRQLYEEDAMIVREFRYIVVQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  SL + ++ +     ++++  F+ + S   + GGNL   + N  + +  ++  + +
Sbjct: 117 LGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGGNLIAIIRNTVQCISQKEETRRE 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       +    I+  +P  +   V   SPG+++V+ ++P G +++ +      +  + 
Sbjct: 177 INTCLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVMYHNPAGILIMSICLLVYFLAWLW 236

Query: 179 MRLMINFDV 187
            R +++ +V
Sbjct: 237 GRKIVSIEV 245


>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 270

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57
           L ++      D    AL  +  S++AG  +  A+     + S        +  E      
Sbjct: 81  LARREAQALRDQLQEALLSLATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAR 140

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + E++  +   +PL+E++     +    + GGN+ E + N+++++ DR  ++ 
Sbjct: 141 EVELGTPVDEALLDLRARVPLEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVER 200

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++Q L+ + +  A I+  +P  +  +V  T+P Y+ V      G   LG+    +  G  
Sbjct: 201 EIQVLTAQKRTEAAILAMIPLGIYLVVRVTNPAYLAVFHATLWGQAALGLILLAVAGGYW 260

Query: 178 VMRLMINFDV 187
           + + + + D+
Sbjct: 261 MAQRIASIDM 270


>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
 gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 306

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 69/168 (41%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL  I  SVR+ L +  A+        DP+R E  RV+     G +L+ +  RM R    
Sbjct: 135 ALPQIAASVRSSLTLERALRTAASHVEDPLREELARVLADTAYGTTLAMAFERMARRTDS 194

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            +V   +  + +Q + GG ++  L  ++     R     +++      + + W +     
Sbjct: 195 PDVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVALAMP 254

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +  +++ T+  +       P G ++LGVA      G+   + +   D
Sbjct: 255 AIFFIMFATNADFSQFYREQPLGWIVLGVAGCSEAFGLFACQRITAMD 302


>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 283

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 1/158 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++RAG  V  AV   V  +  P++ E   ++    LG SL E++    R  P  E 
Sbjct: 116 VMATALRAGQDVMSAVEGSVKYARPPLKRELEELVAEVKLGRSLGEAVENFARKWPSPET 175

Query: 82  SFFSTVISVQSQLGGNLS-EALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              +  +++  ++GG    +AL +++  +R+R  +K +V+A +   + SA ++G++P   
Sbjct: 176 RLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLWC 235

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +++F +PG++  L+  P G     V  A +++G ++
Sbjct: 236 LGVMWFLNPGFLGSLLETPGGRACFTVGVALLVVGWLL 273


>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 297

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 91/185 (49%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R    ++  P  +D + +    G  ++ A+   +  +   V      V     
Sbjct: 111 VRRRAQVRVEALIEALPYYIDAVRQMQAVGNSLAQALDRALADAPGVVWGFIAPVARRLE 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +++++  +   + + E+S  +  I    + GG++S  L NL+ ILR+R  +K +++
Sbjct: 171 LGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKRELK 230

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A   EA+ S  ++  +P     L+   +PGY++  + DPRGH L  VA A   +G++VMR
Sbjct: 231 AAISEARISGRVLIVMPLAAMALLVAMNPGYVDFFLRDPRGHRLALVAMALQGMGMLVMR 290

Query: 181 LMINF 185
            ++  
Sbjct: 291 RVMRL 295


>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
 gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
          Length = 321

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 91/182 (50%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            H I++R     +  P+A+  I   + AGL      + +  +S  P++  F RV +    
Sbjct: 135 SHAIERREDALREALPDAVWSIGICLHAGLSQQQTFSRLEEESHGPLKEVFSRVSQALAA 194

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L E+++ +     ++E++F +T + +Q Q GG++ + L     +L    N++  +  
Sbjct: 195 GSPLDEALALLKGDGSIRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAV 254

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + +A+ SA ++ ++   ++ ++   S G++    +   G ++L VA +  + GIM +R 
Sbjct: 255 NTAQARLSARVVVAVTVLLAGVLSVLSDGFLETFFSSTEGIIMLAVALSMQVGGIMAVRK 314

Query: 182 MI 183
           ++
Sbjct: 315 IL 316


>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
 gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
           cellulolyticum H10]
          Length = 247

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K +I+KR  +    F + L  +  S+ AG P+  A    +             +  E + 
Sbjct: 55  KQIIEKRKNELNLQFKDLLISLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETKI 114

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    L +S+ E++S       + ++  FS VI +  + GGNL +A+ N SRI+ ++  
Sbjct: 115 IINKLSLNVSIEEAVSDFAERSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISEKIE 174

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           M  +++ L    K    ++  +P  +  ++  T+  Y+N +     G +   +    +  
Sbjct: 175 MAQEIETLLSSRKLEQKVLNIMPIAMIFILSTTATEYINPVFTTVTGRIAATLCLILLTA 234

Query: 175 GIMVMRLMINFDV 187
              + + +IN  +
Sbjct: 235 AYFISKRIINIKM 247


>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 306

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K L+  P+ LD++  SV AGL    A+A ++ +   P+  EF  V++   
Sbjct: 149 LNKQIAQRQKKILNSLPDVLDLLTVSVEAGLGFDGALAKVIDKMPGPIAIEFENVLQEMK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  M   + L +++ F   I    QLG ++   L   S  +R+++  +AK +
Sbjct: 209 VGKQKRDALKDMAERVGLHDLTTFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEK 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+    K            +  +V F  P   +VLI      ++
Sbjct: 269 AMKAPVKM-----------LIPMVLFIFPTIFSVLIGPVIIKVI 301


>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 302

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 87/177 (49%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            + ++D P  +D + + +  G  +  A+A  +  SS  V +     I    LG  L E++
Sbjct: 125 EQLIEDLPFFIDAVRQLIAVGNSLPQALARALPASSPAVHAYLGPAIRRIELGAPLGEAL 184

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            ++   + L E+S  ++ I V  + GG L+  L+N++ ++R+R  +  ++ A + E + S
Sbjct: 185 QQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEMRVS 244

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           A ++  +P  ++     ++  Y++  ++  RG  L  VA A  LIG   M  +   D
Sbjct: 245 AKLLAVMPLILAAFFLLSNHAYLDFFLDPQRGRTLALVAVALQLIGAAAMARIQRLD 301


>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
          Length = 194

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 59/106 (55%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  KR  +     P+A+D+I R++RAG   + A+ ++  +   P+  EFR   E  + G
Sbjct: 72  RLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVGQEIKAPLGPEFRTTFEEINYG 131

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
           ++L E+++ +   +P+ ++ +F   + +Q + GGNL+E L  +  +
Sbjct: 132 VALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNLAEILDTIGTM 177


>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 283

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 81/173 (46%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              + +  +  S+++G+ +  A + +V     P+  EF  + E    G  +  ++     
Sbjct: 111 QTADVMTALSASIKSGMTIEQAFSEMVDNMYPPISEEFALIRERIDAGQPVIAAVKSADE 170

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + +  +S     I +  + GG L+  +  L+   R+ + ++ +V+  +   + SA I+ 
Sbjct: 171 RLQVPRLSLIFQTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSARIMF 230

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            +PF +  L+Y   P  + +L ++  G+++L +A A  +    +M+ +I  D+
Sbjct: 231 LMPFFICGLLYLIEPDQVMLLFDNLVGNIVLVIAIAMDISAYFIMKKLIELDI 283


>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 326

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 11/168 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R  +     P+ +D++  +V AGL +  AV  +  +   PV +EFR+ ++   
Sbjct: 169 LKARATRRKRQLARALPDVMDLLSVAVEAGLGLDGAVQKVTEKFPAPVSTEFRQYLKELR 228

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+S  E++  +     L E+  F+  +    +LG +L+  L   +  LR ++  +A+ Q
Sbjct: 229 LGVSREEALRSLADRAELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQ 288

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           A+    K            +  LV F  P    VL+      +L   A
Sbjct: 289 AMKTPIKM-----------LLPLVLFIFPTLFIVLLGPALIQILSAFA 325


>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
           [Achromobacter xylosoxidans A8]
 gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
           [Achromobacter xylosoxidans A8]
          Length = 307

 Score =  120 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              KR  + +   P  LD IVR +  G  +  A       + +P+R              
Sbjct: 126 RADKRQRRMISQLPAFLDNIVRLLTIGNSMGAAFQTAAAATDEPLREVVETASSLSRS-K 184

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L  +++++ R   L+E+   + V+S+  + GG   + L  ++  +RD    + ++ A S
Sbjct: 185 ELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASS 244

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            E + SAWI+  LP  ++  +   +      L  DP+G  +L  A    + G   +  M 
Sbjct: 245 AEVRLSAWILALLPVGIAGFIIVANNNLFMGLWQDPQGFRMLLTAVCLQVGGCYWLYRMA 304

Query: 184 N 184
            
Sbjct: 305 K 305


>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 256

 Score =  120 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57
           L K+R  K L +F  AL ++   + AG  + +A  +   + S        +  EF+++ E
Sbjct: 67  LRKQRQRKLLLEFREALSVLSSFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISE 126

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L + + +        L E+  FS + SV  + GG L   +   S ++ D+  +  
Sbjct: 127 GLEQKLPIEDLLFDFSTRSGLDEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGISE 186

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  LS   +    I+  +PF +   +  +SP ++ +L     G +L+       L+ + 
Sbjct: 187 EILTLSAARRYEQRIMNLIPFLLLLYMKLSSPDFLRILYETAAGRILMSFCLFLYLLAVR 246

Query: 178 VMRLMINFDV 187
           +   +++ +V
Sbjct: 247 LSERILDIEV 256


>gi|167760286|ref|ZP_02432413.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
 gi|167662169|gb|EDS06299.1| hypothetical protein CLOSCI_02659 [Clostridium scindens ATCC 35704]
          Length = 238

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 75/189 (39%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIET 58
            +K+  +FL  F  A+  +  ++  G  V +A+     +          +  EF  +   
Sbjct: 50  ARKKDQEFLLQFKEAIQAMASALNTGYSVENALLEAQKELRLLYPEDARISREFLVMARQ 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             L + + + +         ++V  F  V +   + GG++   + N +  + D+ ++K +
Sbjct: 110 LRLHVPMEQILEEFAGRSGQEDVENFVAVFAAARKSGGDMISIIRNTANQIGDKIDVKRE 169

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +    K    ++ ++P+ +   +  + P +M+ L  +  G  ++       L    +
Sbjct: 170 IDTVLAAKKYEFRVMAAIPYAIIGYMSLSFPEFMDSLYGNIMGIGVMSACLTMYLGAYYL 229

Query: 179 MRLMINFDV 187
              +I  +V
Sbjct: 230 GARIIRIEV 238


>gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
 gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
          Length = 224

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 76/191 (39%), Gaps = 6/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVI 56
            + +++  +F + F  ++  +  ++  G  V +AV                +R EF R+I
Sbjct: 34  RVCREKEQEFREQFRVSIQTMASALNIGYSVENAVRETARDLKPLFRRDSRIRKEFERMI 93

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               +   + + +S +   +  ++V  F  V S   + GG+    L +  R + D+   +
Sbjct: 94  HQLDINQPVEQVMSELADRVSQEDVENFVIVFSAAKRTGGDSISILRSAVRDISDKIEAE 153

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++Q L    K    ++  +PF +   +    P +M VL  +  G  L+ V         
Sbjct: 154 KEIQTLLASKKLEFKVMCIIPFGILFYMRLAFPEFMQVLYGNLAGAALMTVCLGIYAAAY 213

Query: 177 MVMRLMINFDV 187
            +   ++  +V
Sbjct: 214 RMGEKLVEIEV 224


>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
 gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
           25986]
          Length = 308

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 85/181 (46%), Gaps = 1/181 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++      +  P A   +  S+ +G  ++  +  +   + +PV +EF RV      G+S 
Sbjct: 128 RREQHDAEEAMPEAFTALSMSLASGHSLAQGMRFVGAHAQEPVHTEFLRVAAAIDCGISA 187

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++  ++  +    +S  +  + V  + G  L++ L+  S ++ +R  +K ++   + +
Sbjct: 188 TDALDDLLVRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQ 247

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A+ SA ++ ++P  +  ++   S  +   L   P G   + +  A   + ++V+R ++  
Sbjct: 248 ARMSAHMVAAMPTGMCAVLALLSADFRRGL-ATPAGAGAVVLGLALNAVALVVIRRIMRV 306

Query: 186 D 186
           +
Sbjct: 307 E 307


>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 309

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H+I+ R  K +   P+ LD++  SV+AGL +  A+  +V +   P+  EFRR++    
Sbjct: 153 LNHIIRNRQTKIIRQLPDVLDLLSISVQAGLSLDGAMRKVVERMEGPLIDEFRRMLRDVR 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G++   S+  M R   +Q+V  F   +    +LG ++S+ L   +  +RD +  +A+ Q
Sbjct: 213 MGMTRRRSMQLMARRCDVQDVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQ 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    ++  +   +  +V    P  ++++
Sbjct: 273 AMKAPVKMIFPLVFCIFPAIFVVVLL--PSLISLM 305


>gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 251

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K   K+R  KF   F  AL  +   +  G  + +A+  +  +          +  EF  +
Sbjct: 60  KEYAKRRKEKFQKQFKEALQSLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYL 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +    + + + ++       + + EV+ F T++S   + GG++   L      +  +  +
Sbjct: 120 VRQLEMNIPVEQAWKTFADRVEMSEVTHFVTILSTIKRSGGDMIAVLRQTIETICMKLEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  + +  +    I+ ++P  +   +  + P +++VL  +  G +++ V        
Sbjct: 180 QQEIYTIIVAKQMEFRIMSAIPMGIIVYLKMSFPEFLSVLYQELVGKVVMTVCLLIYFAA 239

Query: 176 IMVMRLMINFDV 187
               + ++  +V
Sbjct: 240 YQWGKKILEIEV 251


>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
 gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
          Length = 289

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 92/184 (50%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    K +  F D F  +L +I R++ +G  ++ ++      +   +R EF R+I+  +
Sbjct: 102 LKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGKIRIEFERIIKQIN 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L E+++      P +  + FS  + +  + GG++ ++L  L++ L   + ++ K  
Sbjct: 162 AGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVIRKKTL 221

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +L+ E++ +A I+  LPF +  ++   +      L  +  G  ++      + IG ++++
Sbjct: 222 SLTSESRGAAKILAVLPFIMLLVLKSFAVENFEYLFGEQYGKYIIIYVVTSVSIGFVLIK 281

Query: 181 LMIN 184
            MI+
Sbjct: 282 RMID 285


>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 291

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +  +KR     D      D + + +  G  +S A+A     S   V   F   I     G
Sbjct: 107 YRARKRMNALSDAMLGYFDRVRQLLVVGNSLSVALARATQSSPPIVIEFFSPTIRRIANG 166

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             ++ES++++     L E+  F T I    + GG+L+  L+NL   +R R  +  +V+  
Sbjct: 167 AGVAESVNQLADETDLYELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVRGS 226

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + +ASAW++G LP  V+++V   S  YM   I +P G  LL   A   + G  +MR +
Sbjct: 227 TSQIRASAWVLGLLPMIVASVVMVQSTDYMRWFIEEPAGRKLLIYCALSQIFGAFMMRNV 286

Query: 183 IN 184
           + 
Sbjct: 287 VR 288


>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 295

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+   L   P+ LD++  SV AGL    A+  +V +S  P+  EF   +    
Sbjct: 139 LNLCRRQRSEGILKSLPDVLDLLSVSVEAGLGFDAALQKVVEKSQGPLADEFDTALNEIR 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M R + + +VS F   +     LG ++S  L   +  +R ++  +A+ +
Sbjct: 199 MGKPRREALRDMARRVEVDDVSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEK 258

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           A     K            +  +++F  P    VL+    G  LL +   F
Sbjct: 259 AQKAPVKI-----------LIPMLFFIFPTIFIVLL----GPALLQIGKVF 294


>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 643

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L   P+ALD++  SV AGL    A+  IV +  + +  EF  V+    
Sbjct: 483 LSREITQRRRRILLQMPDALDLLTISVEAGLGFDAAMLEIVQKWDNDIAREFALVLSEMK 542

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S  +++  M   + L E+    + I    ++G ++   L+  S  +R R+  +A+  
Sbjct: 543 LGKSRRDALRSMAERVQLDEMKLLVSSIVQADEIGASIGRTLSIQSEQMRLRRRQRAEEL 602

Query: 121 ALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
                 K     ++   P     L+    P  +N L
Sbjct: 603 GHKAVIKIIIPMVLFIFPAVFVVLLGPAIPTILNAL 638


>gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
 gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
          Length = 268

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 78/179 (43%), Gaps = 6/179 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQHLGLSLSES 68
            F  A+ ++  S+ AG  + ++ +    Q  +       +  EF  +     L  +L E 
Sbjct: 90  QFKEAVLMLSSSLAAGYSMENSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEEL 149

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            S       ++E+  F+ ++    + GG +   +++++ I+  +  ++ +++ ++ + + 
Sbjct: 150 WSDFADRSGVEEIRSFALILRSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQKQF 209

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              I+  LP  +   +  TSPG+ + +     G +++ V  A      ++   M+  ++
Sbjct: 210 EQKIMNLLPILIVLYIDVTSPGFFDSMYETTVGRIVMTVCLAVYAGAYVLAGRMLEIEI 268


>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 311

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR    +   P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    
Sbjct: 151 LGQQIKKRKKAIVKALPDALDLLCICVEAGLSFDQAMQRLTEKWDDPLSKEFKRVLSDTR 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    +++  M+    + +V  F   +    QLG ++   L   S  +R R+  +A+ +
Sbjct: 211 LGRPRRDAMKDMIDRCGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEE 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A     K            +  +V+   P    V++      ++
Sbjct: 271 AHKAPIKM-----------LFPMVFLIFPALFIVILGPAVPRIM 303


>gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 75/192 (39%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           + L K+   +    F + +  +  S+  G  + +A      +          +  EFR +
Sbjct: 57  RELAKREDERLAGAFKDGIIAVSFSLNVGYSIENAFREAYKEMQMLYGSESRIAKEFRII 116

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                   ++ + +        ++++ +F+ V     + GG+L   + N + ++RD+  +
Sbjct: 117 CNRMAQNENIEDILEDFAAESGVEDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEV 176

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
              ++ +    +    ++  +PF +   +   SP ++  L  +  G  ++    A   + 
Sbjct: 177 AEDIRTIISGRRMEQMVMNFVPFGIIVYLRLASPEFIEPLYGNAAGVAVMTGCLAVYALA 236

Query: 176 IMVMRLMINFDV 187
           I + R + +  V
Sbjct: 237 IALGRKITDIKV 248


>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 306

 Score =  117 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K     P+ LD++  SV AGL    A+  +V + + P+  EF R+++   
Sbjct: 148 LSKKISERQKKMQQALPDVLDLLTVSVEAGLGFDSALVRVVDKIAGPISEEFERLLQEIR 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  +     +++++ F T I    +LG ++ + L   S+ +R ++  +A+ Q
Sbjct: 208 MGKPRRDAMRDLGERTNVEDLTNFITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQ 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+    K            +  LV+F  P    +L+      ++
Sbjct: 268 AMKAPIKM-----------LLPLVFFIFPTLFIILLGPAAIKVM 300


>gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 251

 Score =  117 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55
           K  IKK+  +F   F  +L  +  ++  G    +A+       S        +  E+  +
Sbjct: 60  KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I   ++ + L +        +  ++VS F +V     + GG+  E + N  + + ++  +
Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++      K    ++  +PF +   +    P ++ VL  +  G  ++ V  A     
Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239

Query: 176 IMVMRLMINFDV 187
             + + MI  +V
Sbjct: 240 FYMGKKMIEIEV 251


>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
           [Achromobacter xylosoxidans A8]
 gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
           [Achromobacter xylosoxidans A8]
          Length = 281

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 95/176 (53%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F    P AL ++  ++RAG  ++  +  +V QS  P+  EF  ++  Q +G+    ++  
Sbjct: 106 FEQQLPMALLMLAAALRAGAALTTGLRHVVEQSGAPLAQEFGLMLREQRMGVPWDSALEN 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   MP    +     + + +Q GGNL+EAL ++++ LR R  ++AK+ AL+ + +  AW
Sbjct: 166 LRNRMPADSTALVVAAMRIAAQTGGNLAEALESIAQTLRARLQLQAKLLALTSQGRLQAW 225

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           I+GSLP  +  ++    P  M +L + P G  +L + A     G++++R ++  D+
Sbjct: 226 IVGSLPLLLLAVLDRLEPEIMGLLWHTPVGWGVLTIVAVLETTGMLLIRRIVRIDI 281


>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
 gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
          Length = 326

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   +KKR A+ +  FP+ALD+++  V AG  +  ++  +  +S      +  EF  V +
Sbjct: 163 VNSRVKKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQ 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M   + + +V+ F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 223 EIKAGKERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRA 282

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A ++  K +   ++ +LP  +  L+
Sbjct: 283 EEKANTLPTKLTLGTMLFTLPPLLIILI 310


>gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 251

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55
           K  IKK+  +F   F  +L  +  ++  G    +A+       S        +  E+  +
Sbjct: 60  KQYIKKQQQEFCAQFKMSLQSMSSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYM 119

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I   ++ + L +        +  ++VS F +V     + GG+  E + N  + + ++  +
Sbjct: 120 IHQLNMNVPLEQIWKEFADRVGQEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEV 179

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +++      K    ++  +PF +   +    P ++ VL  +  G  ++ V  A     
Sbjct: 180 KREIEMTMSAKKLEFQVMSVVPFGIIFYMRIAFPDFVEVLYRNFLGIFVMTVCLAVYAGA 239

Query: 176 IMVMRLMINFDV 187
             + + MI  +V
Sbjct: 240 FYMGKRMIEIEV 251


>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 291

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 84/170 (49%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  L+  +R +  G     A    + +S+ P+R+   RV   + LGL L E + R  +
Sbjct: 120 QLPGYLEQFLRELAVGASPERAFQRQIARSAPPLRNMLERVWVRRELGLELHEGLVRESQ 179

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L E++  +T + V  + GG+L + L +   +LR ++  + +++AL+ E + +A ++ 
Sbjct: 180 LLKLSELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTAVVLA 239

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +P  +   +  T+P +++ + +   G   L +A    L G  VM  M+ 
Sbjct: 240 VIPVLIGGYILLTNPEFLSTMWHSADGRAALWLALGLELSGCFVMWRMLK 289


>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
 gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
           [Vibrionales bacterium SWAT-3]
          Length = 323

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  + K+R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ ++++++V    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQTLRDYTDDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K        L       +    PG M V+
Sbjct: 278 EEIAAKIPTKM--LFPMLLFIWPCFFIVALGPGMMIVM 313


>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
 gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola batsensis HTCC2597]
          Length = 330

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +     +R  +  + FP+ALD+++  V AG  +  A+  +  +       +  EF  V  
Sbjct: 159 INKRQAQRQEEITNGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSH 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  +  M     + +++ F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 219 EIKAGKDKASVLGDMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRA 278

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A  +  K + A ++ ++P  +  L+
Sbjct: 279 EEKANKLPTKMTLATMMLTVPPLLIILI 306


>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 252

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIE 57
           H + +   K   +F   +  I  S+ AG  + +A+               +  E + +I 
Sbjct: 63  HKVHREKKKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    L      K 
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    +    I+  +P+ +   V   +PGY ++L     G ++  ++   + I  +
Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242

Query: 178 VMRLMINFDV 187
               +   ++
Sbjct: 243 WAERVTEIEI 252


>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 324

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             +  R  +  + FP+ALD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 163 RRVDSRKEEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEI 222

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     + +V  F TV+   +  G +++EAL   +  +RD++ M+A+ 
Sbjct: 223 KAGKDRIQVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEE 282

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
           +A ++  K + A ++ ++P  +  L+
Sbjct: 283 KANTLPTKMTLATMMLTVPPLLIILI 308


>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
 gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
           KC4]
          Length = 285

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL---SESIS 70
             +P AL  +  +++ G     A+  +      P+R  F  V+       S     E++ 
Sbjct: 105 HQYPMALAALASAMQGGCSFYQALEQVTPTLRPPMRDVFADVLRRVRTSTSPRAYEEAVL 164

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            + +     +++  +  + +  + GGNL E L +L + L +R++ +  V A++ EA+ +A
Sbjct: 165 EVAKAAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTA 224

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             + +LPF +  +    +P +M  + +   G+ L+   A  +L+G  V+R M+
Sbjct: 225 AFLSALPFALMGVFRAVNPEFMRPVFHTLWGNALVVWVALMVLLGNAVVRRMV 277


>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
 gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
          Length = 323

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  + K R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANELYISQPELADELDTVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++S++V    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K        L       +    PG M V+
Sbjct: 278 EEIAAKIPTKM--LFPMLLFIWPCFFIVALGPGMMIVM 313


>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
 gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
          Length = 321

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
              + R     + FP++LD+++  V AG  +  ++  +  +       +  EF  V +  
Sbjct: 164 RRQQMRQEAIENAFPDSLDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEA 223

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   +  +  M     + +++ F TV+   SQ G ++++AL   S  +RD++ M+A+ 
Sbjct: 224 KAGKDKNTVLKDMSDRCGVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEE 283

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +A  +  K +   +      +  ++    P    ++ +
Sbjct: 284 KANKLPTKMTLATMMLTVPPLMAML--IGPSIYAIVTS 319


>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 307

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +     P+ LD++V SV AGL    A+  +   +S P+  E  RV++   +G S +
Sbjct: 155 RRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQHTSGPLAEELARVLQEIRIGKSRT 214

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  M   + ++EV  F   +   S+LG ++   L   +R  R ++  +A+  A  +  
Sbjct: 215 EALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLREQAREARLKRRQRAEEMAQKVPV 274

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K    ++  +   +  ++    PG ++++
Sbjct: 275 KVMFPVVLCILPAL--IITVVGPGVLSIM 301


>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 304

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 3   HLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +L +K   R+ +     P+A+D++  SV AGL    AV  +   +  P+  E  RV+   
Sbjct: 148 YLYQKSYDRSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQHTEGPLADELSRVLREM 207

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG S S ++  +     + E+  F   +     LG  +++ L   SR +R ++   A+ 
Sbjct: 208 QLGQSRSAALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQHAEE 267

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A  +  K +  +I  +  C+  +V    P  +N++
Sbjct: 268 RAQQVPVKITVPLIFCILPCLFVVV--LGPAVLNIM 301


>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 305

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  + R A     FP+ LD++  SV AGL    A+A +V +S  PV  EFRRV++   
Sbjct: 148 LENTARSRKASIEKSFPDTLDLLTVSVGAGLGFDGALAKVVEKSEGPVAEEFRRVLQEIK 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  E++        + +V  F+  I    QLG N+ + L   S  +R ++  + + Q
Sbjct: 208 MGKARREALRDFGERTGIDDVKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQ 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+ +  K            +  LV F  P    VL+      ++
Sbjct: 268 AMKVPVKM-----------LLPLVAFIFPTIFIVLLGPAMIQIV 300


>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
           C54]
          Length = 303

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 72/168 (42%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +   P  LD IVR V  G  ++ A       + +P+R               L  ++ ++
Sbjct: 136 VSQLPAFLDNIVRLVTIGNSMAAAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQV 195

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R   ++E+   + V+SV  + GG   + L  ++  +RD    +A++ A S E + SAWI
Sbjct: 196 SRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSAWI 255

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  LP  ++  +   +      L  DP G  +L  A    + G  ++ 
Sbjct: 256 LALLPLGIAGFIMVANNDLFMGLWVDPLGFKMLLTAVCLQVAGSYILY 303


>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
 gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
          Length = 326

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             + R  +    FP+ALD+++  V AG  +  A+  +  +      P+  EF  V     
Sbjct: 169 RAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMK 228

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   ++ +  M   + +Q+V+ F T +   S  G +++EAL   S  +RD++  +A+ +
Sbjct: 229 AGKDKTKVLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEK 288

Query: 121 ALSMEAKASAW-IIGSLPFCVSTLV 144
           A  +  K + + ++  +P  +  L+
Sbjct: 289 ANKLPTKLTLFTMLFCVPPLLVILI 313


>gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRV 55
           + L ++R  +    F   + ++   + AG  + + +A+  G+          +  EF  +
Sbjct: 36  RDLRQERIRQLGLQFKEGILVLASYLGAGYSLENGLAMCTGELEGIYGKQGMITEEFSTL 95

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                +   +   +        L++V  F+ V +   + GG L   +   + I+RD+  +
Sbjct: 96  TNGVRMNRPVELLLMEFGARSGLEDVDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQV 155

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++  ++        I+  +PF +   +  TS G+  V+     G  ++ +  A  L  
Sbjct: 156 QEEIHTMTAARVFEQKIMNGIPFLIVLYIDLTSLGFFRVMYETMMGRAVMTICLAVYLGA 215

Query: 176 IMVMRLMINFDV 187
            M+ + ++  +V
Sbjct: 216 WMLSKKILEIEV 227


>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
 gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
          Length = 301

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
              I+KR  +   +F + +  +  S+ AG    +A      +       S  +  E + V
Sbjct: 110 SRCIEKRQRQLYVEFKDMVQSLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWV 169

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I    +   +   +  M     ++E+S F+ V+ V  + GGN+   +   +  +  +  +
Sbjct: 170 IRGLRMHEDIEYLLQDMGERSGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEV 229

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++Q +    K    I+  +PF +   +   +  Y+++L  +  G +++ +  A  ++ 
Sbjct: 230 ELEIQTMIAAKKYEQKIMLIVPFFILAYLRIANGSYIHILYENIAGRLIMTICLAVSILS 289

Query: 176 IMVMRLMINFDV 187
               R MI   V
Sbjct: 290 AAWSRKMIRIGV 301


>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
 gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
          Length = 323

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             + R     + FP++LD+++  V AG  +  ++  +  +       + SE+  V     
Sbjct: 163 RQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSILRVSQELKSGFPDLASEYEIVSHEMK 222

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   +  +  M     + +++ F TV+      G +++EAL   +  +RD++ M+A+ +
Sbjct: 223 AGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFGTSIAEALRVYAGEMRDKRVMRAEEK 282

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144
           A ++  K + A ++ ++P  +  L+
Sbjct: 283 ANTLPTKMTLATMMLTVPPLLIILI 307


>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
 gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
           antarcticus 307]
          Length = 326

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
              +R  + ++ FP++LD+++  V AG  +  ++  +  +       +  E++ V     
Sbjct: 166 RQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQMVSHEMK 225

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   ++ +  M     + ++S F TV+    Q G +++EAL   S  +RD++ M+A+ +
Sbjct: 226 AGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRVMRAEEK 285

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144
           A ++  K + A ++ ++P  +  L+
Sbjct: 286 ANTLPTKMTLATMLLTVPPLLIILI 310


>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 331

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 11/154 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P+ +D++  SV AGL    A+  +  +   PV +EFR+ ++   LG+   E++  + 
Sbjct: 187 RALPDVMDLLSVSVEAGLGFDGAIQKVSEKFPAPVSTEFRQYLKELRLGVEREEALRSLA 246

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L E+  F+  +    +LG +L+  L   +  LR ++  +A+ QA+    K      
Sbjct: 247 DRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKM----- 301

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
                 +  LV F  P    VL+      +L   
Sbjct: 302 ------LLPLVLFIFPTLFIVLLGPALIQILAAF 329


>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
 gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
           thermophila UNI-1]
          Length = 319

 Score =  114 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  +     P+ALD++   V AGL    A+A +  +    +   F RVI+   
Sbjct: 158 LTSKISRRQKEIRKSMPDALDLLTICVEAGLGFDAAMAKVAEKWESELSLAFARVIQEIQ 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  +++  M   + + E++ F   +    QLG ++++ L   S  +R R+   A+ +
Sbjct: 218 LGKTRRDALRDMAERIGIPEMTSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEE 277

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           A     K    I  +L    S ++   +P  + ++ +   G 
Sbjct: 278 AHKAPVKM--LIPMALLIFPSLMIVLMTPAALRLMNSALAGM 317


>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
 gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
           13280]
          Length = 247

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  +       A   +  S+ +GL ++ A+  +   + +PVR+EF R       G  +
Sbjct: 67  RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQEPVRTEFLRAEAQVACGAGM 126

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +E++  +V  +    + F +  + V  + G  LS+ L   +R++R+R  ++ K+   + +
Sbjct: 127 TEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVRTAQ 186

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA ++  +P  +   +   S  +   +   P G   + VA     I   ++++++ 
Sbjct: 187 VRMSARLVAGMPVAMVAFLAAASSDFREGIATVP-GAASIAVALLLDGIAWSIIKVVMR 244


>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
 gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
           SSC/2]
          Length = 252

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 5/190 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIE 57
           H   +   K   +F   +  I  S+ AG  + +A+               +  E + +I 
Sbjct: 63  HKGHREKEKLRKEFREMMISIGNSLSAGYSIENALKTAKNDLEMYEEHSLLAKELQLLIN 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +   +  M  ++ L+E   F+ VIS+  + GGNL E   N    L      K 
Sbjct: 123 KLKMNEPVDNLLFDMAEHVGLEEFYQFAQVISIAKKSGGNLIEITENTIEHLSQAIQTKE 182

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    +    I+  +P+ +   V   +PGY ++L     G ++  ++   + I  +
Sbjct: 183 EIHTMIAAKQMEKKIMSVMPYFILLYVRIANPGYFDILYESFAGVLVAVISLLCLWIADI 242

Query: 178 VMRLMINFDV 187
               +   ++
Sbjct: 243 WAERVTEIEI 252


>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
 gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
           stellata E-37]
          Length = 324

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
            ++KR  +    FP+ALD+++  V AG  +  ++  +  +       +  EF  +     
Sbjct: 164 RMEKRKEEIQQGFPDALDMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMK 223

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   S+ ++ M      Q+VS F TV++     G ++S+AL   +  +RD++ M+A+  
Sbjct: 224 AGKDRSQVLNDMSERCGSQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEA 283

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144
           A  +  K +   +   +P  +  LV
Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
 gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium Y4I]
          Length = 326

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I++R  K  + FP+ALD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 166 RRIEERKQKITEGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G      +  M     +Q++S F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 226 KAGKEKDRVLRDMGTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEE 285

Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144
            A  +  K +   +G  +P  +  LV
Sbjct: 286 AANKLPVKMTLATMGLTVPPLLIILV 311


>gi|153853656|ref|ZP_01995036.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
 gi|149753811|gb|EDM63742.1| hypothetical protein DORLON_01027 [Dorea longicatena DSM 13814]
          Length = 258

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 6/182 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSL 65
           F   F   +  +  ++  G  V +A      +          +  E   +     + + +
Sbjct: 77  FQKQFREMIQTLSSALNTGYSVENAFYETQKELKIQYPEEARISRELLLITRKLRMHIPV 136

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            + +      +P ++V  F TV     + GG++   + N +  + D+  +K ++  L   
Sbjct: 137 EQVLEEFAEKVPSEDVKSFVTVFVTAKKSGGDMIGIIRNTTSQIGDKIEVKREIDTLLAA 196

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            K    I+  +P+ +   +  +   +M  L  +  G  ++ +     +    +   ++  
Sbjct: 197 KKYEFQIMSMVPYGIIAYMSLSFSDFMEELYGNVTGIGVMTLCLGIYVGAYYLGVRLLRI 256

Query: 186 DV 187
           DV
Sbjct: 257 DV 258


>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
 gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
           sp. SE45]
          Length = 324

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
            +++R  +  + FP+ALD+++  V AG  +  ++  +  +       +  EF  +     
Sbjct: 164 RVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMR 223

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   S  ++ M     +Q+VS F TV++  +  G ++++AL   +  +RD++ M+A+ +
Sbjct: 224 AGKDKSNVLNDMGERCGVQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEK 283

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144
           A  +  K +   +   +P  +  LV
Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
 gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
          Length = 291

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K L+++R +     F  AL  +  S+ AG  V +     V             +  EF  
Sbjct: 100 KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 159

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +     +G  +  ++  + R   +++++ F+ V +   + GG+L E +   S ++ ++  
Sbjct: 160 ITACLEIGQPVEAALQELARRAQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 219

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  + ++ + PF     +  T+  YM  L +   G  ++      +++
Sbjct: 220 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTMTAGDYMMPLYS---GTGMILSTFCLLVL 276

Query: 175 G--IMVMRLMINFDV 187
           G  ++ +  ++  +V
Sbjct: 277 GGCLVWINHIMKIEV 291


>gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium
           phytofermentans ISDg]
 gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium
           phytofermentans ISDg]
          Length = 247

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           + + + R  K   +F + +  +  ++ AG  V +A    +            +  EF+ +
Sbjct: 56  RKMAEDRKKKLNTEFLDGIHSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCI 115

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +   +  + +  +I        L++V  FS V     + GG+L   +    + + ++  +
Sbjct: 116 VSQINHNIPIENAIGEFANRSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEV 175

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +++ L    K  A I+  +PF +   +   SP ++  L ++  G + + +     L  
Sbjct: 176 MREIETLITAKKMEANIMKLVPFGILGYMLLGSPQFLKPLYHNLFGIIFMTILLGIYLFL 235

Query: 176 IMVMRLMINFDV 187
             ++  +I   V
Sbjct: 236 TKLVDKIIAIRV 247


>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
 gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
           [Oceanicola granulosus HTCC2516]
          Length = 987

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    ++R  +  + FP++LD+++  V AG  +  ++  +  +       +  E+  V  
Sbjct: 824 VNKRQQERQQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAY 883

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M     + +V+ F TV+    Q G +++EAL   +  +RD++ M+A
Sbjct: 884 EMKAGKDKISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRA 943

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV---------YFTSPGY 151
           + +A ++  K + A ++ ++P  +  L+            +P Y
Sbjct: 944 EEKANTLPTKMTLATMMLTVPPLLIILIGPSVFDIYDTLIAPDY 987


>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
 gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
          Length = 331

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
            I KR  +  + FP++LD+++  V AG  +  A+  +  +       +  EF  V     
Sbjct: 170 RIDKRQEEITNGFPDSLDLMLVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIK 229

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G      +  M     + +V+ F TV+      G ++++AL   +  +RD++ M+A+ +
Sbjct: 230 AGKDKITVLKDMAERCGVGDVTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRAEEK 289

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144
           A  +  K +   ++ ++P  +  L+
Sbjct: 290 ANVLPTKLTLGTMMFTVPPLLIILI 314


>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
           denitrificans OCh 114]
 gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter denitrificans OCh 114]
          Length = 355

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  +  R  +    FP++LD+++  V AG  +   +  +  +       +  EF  V  
Sbjct: 191 VRRRVDARKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 250

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A
Sbjct: 251 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRA 310

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           +  A  +  K + A ++ ++P  +  LV
Sbjct: 311 EEAANKLPTKMTLATMMLTVPPLLIILV 338


>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
 gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
           3645]
          Length = 309

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 15/178 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +L KKR  +     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 143 LWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGLDQAMRRVSEEMKKTYRVIAEEFGLCNF 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   S+ +  +     + ++   + ++    + G ++S+AL   S  +R R+   A
Sbjct: 203 QLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQADKFGSSISQALRVQSDSMRTRRRQIA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +A     K            +  LV+F  PG   VL+  P    ++      M   
Sbjct: 263 EEKAAKTAVKM-----------IFPLVFFIFPGIFVVLVG-PAAITVIREMLPMMAAN 308


>gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
 gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQ 59
           K++  +F + F  ++  +   ++ G  V +A+     +          +  E+  ++   
Sbjct: 45  KQKKEEFREQFRESIQTLSAILKVGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            L ++  E + +    +  ++V  F TV     +LGG+    + + +  + ++  ++ ++
Sbjct: 105 DLNMTAEEVMKQFADRVKEEDVENFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           Q +    K    I+  +PF +   +    P +M VL  +  G + + +     L    + 
Sbjct: 165 QVMLTSKKLEFKIMCVIPFVIILYMRSAFPEFMAVLYGNLAGTLFMTICLMVYLTAYQLG 224

Query: 180 RLMINFDV 187
           + M   +V
Sbjct: 225 KKMTQIEV 232


>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
 gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
           papyrosolvens DSM 2782]
          Length = 247

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 7/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K +I KR  +    F + L  +  S+ AG P+  +    +             +  E + 
Sbjct: 55  KQIIYKRKRELNLQFKDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKI 114

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +I    L +S+ ++IS       + ++  FS VI +  + GGNL EA+ N SRI+ ++  
Sbjct: 115 IINKLSLNVSIEDAISEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIE 174

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           MK +++ L    +    I+  +P  +  ++  T+  Y+  +     G + + +    +++
Sbjct: 175 MKQEIETLLSSRRFEQKILNIMPIAMIFILSTTAGEYIKPVFITVTGRIAVTLCLVLLIV 234

Query: 175 GIMVMRLMINFD 186
             ++   ++N  
Sbjct: 235 AYLISNKIMNIK 246


>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
          Length = 306

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K    +R  +     P+ LD+++ SV AGL    A+  +  +    +  E  + ++   
Sbjct: 148 VKRKATERQKEIQRSLPDMLDLLLVSVDAGLAFDMALKKVADKMPGELSREIGKALDEIR 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  E++  M     + ++S F + +    QLG N+++ L   +  +R R+ M+A+ +
Sbjct: 208 MGKTRIEALRSMANRTGVPDISTFISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEE 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+    K            +  LV+F  P    VL+      ++
Sbjct: 268 AMRAPIKM-----------LFPLVFFIFPALFVVLLGPAGIRIV 300


>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 274

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVI 56
           L++KR  +    F  AL  +  S+ AG  V +A                  +  EF  + 
Sbjct: 84  LLEKRRVRLQLQFKEALYSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIR 143

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G +L   +S+      L+E++ F  V S   + GG+L + +   S+++ ++ +++
Sbjct: 144 HRMENGETLESGLSQFANRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDIQ 203

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +  + +  + I+ ++PF     +   +P Y   L + P G++LL +     +   
Sbjct: 204 QEIAVMLAQKRFESRILTAVPFVFIAGLNLAAPDYTGPLYSSPLGYVLLTLLLLGFVGCG 263

Query: 177 MVMRLMINFD 186
            ++R ++   
Sbjct: 264 ALIRKLMMIR 273


>gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus
           polymyxa SC2]
 gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus
           polymyxa SC2]
          Length = 263

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           K L+++R +     F  AL  +  S+ AG  V +     V             +  EF  
Sbjct: 72  KFLLQRRRSALSIQFKQALYSLSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNI 131

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +     +G  +  ++  + R   +++++ F+ V +   + GG+L E +   S ++ ++  
Sbjct: 132 ITACLEIGQPVEAALQDLARRAQIEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLE 191

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  + ++ + PF     +  T+  YM  L +   G  ++      +++
Sbjct: 192 IQQEIGVMIAQKRFESRVMFAAPFLFVLFMTVTAGDYMMPLYS---GTGMILSTFCLLVL 248

Query: 175 G--IMVMRLMINFDV 187
           G  ++ +  ++  +V
Sbjct: 249 GGCLVWINHIMKIEV 263


>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 310

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  +     P+ALD++  SV AGL    A+  +  ++   +  EF  +++  H
Sbjct: 153 LNSRIRNRKTQVEKSLPDALDLLTVSVEAGLGFDGALMKVAEKTKGIMADEFILMLQECH 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M   + + ++S F   I +   LG ++   L   S+ +R ++  K +  
Sbjct: 213 MGKPRREALRDMATRLDVDDLSSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEEL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           A+    K            +  +V+F  P    +L+      ++   A
Sbjct: 273 AMKAPIKM-----------LFPMVFFIFPAIFVILLGPAALQIMKAFA 309


>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 162 IKRRAQERHDQIVAGFPDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAH 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 222 EVKAGKERVAVLKDMAERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 281

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A ++  K +   ++ ++P  +  L+
Sbjct: 282 EEKANTLPTKLTLGTMLLTVPPLMLILI 309


>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 320

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ LIKKR  +  + FP+ LD+++    AGL ++ A+  +  +   S   +  E   V  
Sbjct: 159 LERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRVAEECAVSHPVLSGELTLVNM 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++  E++        ++E+  F   +S   + G ++++ L   S   RD++  +A
Sbjct: 219 EIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTSIADTLRIYSDEFRDKRMQRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +     M AK    +I  L FC+     +    P  + VL
Sbjct: 279 EE----MAAKMGTKMIFPLIFCILPSFFLVAIGPAVLGVL 314


>gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
 gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
          Length = 285

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           + ++++R       F  AL  +  S+ AG  V +     V          S  +  E + 
Sbjct: 94  QFMLERRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKV 153

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++     G  +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +
Sbjct: 154 IVSRLEYGEPIEAALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  +  + + PF +   +  TSP YM  + +   G  ++    A   +
Sbjct: 214 IQQEIAVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GSGIMISTFALAAL 270

Query: 175 G--IMVMRLMINFDV 187
           G   + +  M+N  V
Sbjct: 271 GGCFLWINKMMNIKV 285


>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
 gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
           DSM 20544]
          Length = 307

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  +     P  LD++  SV+AGL    A++ I  +   P   E RR+ +   
Sbjct: 152 LNTTIQRRQKQIEHQLPEVLDLLCVSVQAGLSFDAALSKITARMKGPFIDECRRMQDDIR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    ++  M     L++VS F T I    +LG ++ + L N +  +R+R+    K Q
Sbjct: 212 MGVVRRTAMRSMADRCGLEDVSLFMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQ 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147
           A+    K    I+  L   +   ++  
Sbjct: 272 AMKAPVK----IVFPLVLFIFPAIFVV 294


>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
 gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
          Length = 323

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ +++    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +  C    +    PG + V+
Sbjct: 278 EEIAAKIPTKMLFPMLIFIWPC--FFIVALGPGLLIVM 313


>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
 gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
          Length = 323

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  L K+R  K  +  P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LSKLQKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+++ +++ + +    L E+    +++S  S++GG+L++ L + +   RD++   A
Sbjct: 218 KIQAGVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  A  +  K            +  ++ F  P +  V +    G +++  A  
Sbjct: 278 EEIAAKIPTKM-----------LFPMLLFIWPCFFIVALGP--GIIIVIDALG 317


>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
 gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
           gallaeciensis 2.10]
 gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
          Length = 326

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I++R  +    FP+ALD+++  V AG  +  A+  +  +       +  EF  V +  
Sbjct: 166 RRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALADEFDIVAQEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q+VS F TV+   +  G +++EAL   +  +RD++ M+A+ 
Sbjct: 226 KAGKDKDKVMRDMGTRCGVQDVSSFVTVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEE 285

Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144
            A  +  K +   +   +P  +  LV
Sbjct: 286 AANKLPTKMTLATMTLTVPPLLIILV 311


>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 317

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +  R  +     P  LD++  SV AGL    ++  +  + + P+  E +RV +   
Sbjct: 158 LSSKVNTRKNEIQRALPEFLDLLTVSVEAGLGFESSLKKVAEEGTGPLAVEIKRVTQEIS 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++  +   + LQ++S F   I    QLG  +S  L   S+  R ++  +A+ Q
Sbjct: 218 MGKSRKEALIDLKERIDLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQ 277

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+    K            +  L+ F  P    +L+      ++
Sbjct: 278 AMKAPVKL-----------LIPLILFIFPTIFIILLGPAALRIM 310


>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 286

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR A+F + +P+ +D I  +VRAGL +S+A+A +  +   P+R  FRR      
Sbjct: 95  LKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEALAQVGERGPLPLREPFRRFGADYA 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKV 119
                +ES+ R+   +           + +  ++ GG+L   L +LS  LRD    ++++
Sbjct: 155 STGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSSFLRDDARTRSEL 214

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++    +   A +  + P+ V  L+ F   G +    N P G +++G+ AA  ++   VM
Sbjct: 215 ESRQSWSVNGARVAVAAPWLVLGLLSFQ--GDVIQRYNSPVGALVIGIGAAVCVLAYRVM 272

Query: 180 RLMINF 185
             +   
Sbjct: 273 LRIGRL 278


>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 326

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  +  R  +    FP+ALD+++  V AG  +   +  +  +       +  EF  V  
Sbjct: 164 VRRRVDSRKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVGRELRASYPALAEEFEMVAY 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A
Sbjct: 224 EMKAGKDRITVLNDMSERCGVQDVSSFVTVLIQSAAFGTSIADALRVYAEEMRDKRVMRA 283

Query: 118 KVQALSMEAKASAWIIGS-LPFCVSTLV 144
           +  A  +  K +   +G  +P  +  L+
Sbjct: 284 EEAANKLPTKMTLATMGLTVPPLLIILI 311


>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
 gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2150]
          Length = 318

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64
           R    +  FP++LD+++  V +G  +  A+  +  +       +  EF  V      G  
Sbjct: 167 RQKNIIQAFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKD 226

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
               +        + ++S F +V+   +  G  ++EAL   S  +RD++ M+A+ +A ++
Sbjct: 227 KKRVLKDFSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTL 286

Query: 125 EAKAS-AWIIGSLPFCVSTLV 144
             K +   ++  LP  +  LV
Sbjct: 287 PVKMTLGTMVFCLPSLLIILV 307


>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
 gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
           [Roseobacter litoralis Och 149]
          Length = 327

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  +  R  +    FP++LD+++  V AG  +   +  +  +       +  EF  V  
Sbjct: 163 VRRRVDTRKDEITRGFPDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAY 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +  ++       +Q+VS F TV++   Q G +++EAL   +  +RD++ M+A
Sbjct: 223 EMKAGKDKTTVLNDFGERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRA 282

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           +  A  +  K + A ++ ++P  +  LV
Sbjct: 283 EEAANKLPTKMTLATMMLTVPPLLIILV 310


>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
 gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
          Length = 323

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I++R       FP+ALD+++  V AG  +  ++  +  +       +  EF  V    
Sbjct: 166 RRIEERKQAITRAFPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAEEFEIVAHEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 226 KAGKEKDKVLRDMATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEE 285

Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144
            A  +  K +   +G  +P  ++ L+
Sbjct: 286 AANKLPTKMTLATMGLTVPPLLAILI 311


>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
 gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
          Length = 259

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54
           +   K R  +   +F   L  +  S+ AG  + +AV                 +  E   
Sbjct: 67  REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V     +   +   + +M   + + E S F+ V+ +  + GGNL + +      +  +  
Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    +    I+  +PF +   V   +PGY  VL + P G +L  V    ++ 
Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246

Query: 175 GIMVMRLMINFDV 187
             M  + ++  +V
Sbjct: 247 AGMWAKKIVEIEV 259


>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
 gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
           2.4.1]
          Length = 326

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEIVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A ++  K +   ++ ++P  +  L+
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312


>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
 gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
          Length = 259

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-------VRSEFRR 54
           +   K R  +   +F   L  +  S+ AG  + +AV                 +  E   
Sbjct: 67  REERKMRIRQSRLEFKEMLLSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSL 126

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V     +   +   + +M   + + E S F+ V+ +  + GGNL + +      +  +  
Sbjct: 127 VCAGLEVNQPIEVLMDKMALRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQ 186

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K ++  +    +    I+  +PF +   V   +PGY  VL + P G +L  V    ++ 
Sbjct: 187 VKEEILTMVSAKRMEQKIMSVMPFFILLYVRLMNPGYFQVLYDSPGGVILSTVCLIVLVA 246

Query: 175 GIMVMRLMINFDV 187
             M  + ++  +V
Sbjct: 247 AGMWAKKIVEIEV 259


>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
 gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
          Length = 326

 Score =  110 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A ++  K +   ++ ++P  +  L+
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312


>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
           HTCC2601]
 gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
          Length = 323

 Score =  110 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQH 60
            +++R  +  + FP+ALD+++  V AG  +  ++  +  +       +  EF  +     
Sbjct: 164 RVEERKKQIEEGFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMK 223

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   +  ++ M     + +VS F TV++  S  G ++++AL   +  +RD++ M+A+ +
Sbjct: 224 AGKDKASVLNDMGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEK 283

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLV 144
           A  +  K +   +   +P  +  LV
Sbjct: 284 ANKLPTKMTLTTMMLTVPPLLIILV 308


>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
 gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
          Length = 326

 Score =  110 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K   ++R  + +  FP+ALD+++  V AG  +  ++  +  +S+     +  EF  V  
Sbjct: 165 IKRRAQERYDQIVSGFPDALDMMLVCVEAGQSLDQSILRVARESAAGYPALAEEFEMVAH 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G      +  M   + + +VS F T +   +  G +++EAL   S  +RD++ M+A
Sbjct: 225 EVKAGKERVAVLKDMSERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRA 284

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLV 144
           + +A ++  K +   ++ ++P  +  L+
Sbjct: 285 EEKANTLPTKLTLGTMLLTVPPLMLILI 312


>gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
 gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
          Length = 285

 Score =  110 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 82/195 (42%), Gaps = 12/195 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRR 54
           + ++ +R       F  AL  +  S+ AG  V +     V          S  +  E + 
Sbjct: 94  RFMLDRRRKTLNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGASSDLIFELKV 153

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++     G  +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +
Sbjct: 154 IVSRLEYGEPIEVALQDFARRAGMEDITNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLD 213

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           ++ ++  +  + +  +  + + PF +   +  TSP YM  + +   G  +L    A   +
Sbjct: 214 IQQEISVMIAQKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GAGILISTFALAAL 270

Query: 175 G--IMVMRLMINFDV 187
           G   + +  M+N  V
Sbjct: 271 GGCFLWISKMMNIKV 285


>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
 gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
          Length = 337

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   +  RT +  D FP+ALD+++  V AG  +   +  +  + S     +  EF  V  
Sbjct: 172 VNQRVAARTQEIQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAH 231

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL     +        + +V+ F TV+    Q G +++EAL   +  +RD++ M+A
Sbjct: 232 EIKAGLDKPTVLRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRA 291

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K +   ++ ++P  +  LV  +    M   
Sbjct: 292 EEAANKIPTKMTLGTMMFTVPPLLIILVGPSVHDMMENF 330


>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
 gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
          Length = 311

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   
Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSHEFQRVLQDIR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  M     +++V  F + +    QLG ++S+ L   S  LR R+  +A+  
Sbjct: 207 LGRTRREALRDMAARTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEA 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A     K            +  +V+   P    V++      ++  +      +G
Sbjct: 267 AQKAPVKM-----------LIPMVFLIFPALFVVILGPAVPRIMSALGVMNSGMG 310


>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
 gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
          Length = 323

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I++R       FP+ALD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 166 RRIEERKQAITRAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAYEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q+V+ F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 226 KAGKEKDKVLRDMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEE 285

Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144
            A  +  K +   +G  +P  ++ L+
Sbjct: 286 AANKLPTKMTLATMGLTVPPLLAILI 311


>gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
 gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 79/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K LI+KR  +    F   L +I+ S++AG  +  A+     +          + +E   +
Sbjct: 54  KKLIEKRKNELSAQFIEFLQVIMSSLKAGTSLERAILSARERLYSLYNNDSLIITEIISM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
             +  + + + + +    +   +++++ F+ V  V  + GGNL + + +  + + D+  M
Sbjct: 114 ESSLRMNIPVEDILYDFGKRSGIEDINQFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEM 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + ++QA     K  +  + ++   +   +  +    MN L     G +++    A     
Sbjct: 174 EREIQAFISGKKLESKFMTAILPAILLYMNISMADMMNSLYQGILGRLVMSGVLAGYGFC 233

Query: 176 IMVMRLMINFDV 187
            +    + +  V
Sbjct: 234 CLWFDKITDIKV 245


>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 297

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 65/142 (45%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +KR     D  P+ LD++  +V AGL    A+A +  ++  P+  E   V+   ++G ++
Sbjct: 144 RKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAIAKVTERTQGPLADELNTVLHQLNMGETV 203

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++ S + +    + +  F T +    +LG  L++ LA ++  +R     +A+ +A    
Sbjct: 204 YDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTTAQRARQKAAKAS 263

Query: 126 AKASAWIIGSLPFCVSTLVYFT 147
            K +  +   +      L+  +
Sbjct: 264 PKIAGVVTIIMVPGTMALIMVS 285


>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 314

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 7/164 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + HL+KKR ++     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 154 LGHLVKKRQSRIRGGIPDALDLMVVCTESGLGFNSALRRVADEVAISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G+ +S++ + ++    L E++   T+++  S++GG+L++ L   +   RD++N + 
Sbjct: 214 KINAGVEMSDAFNDLIERTGLIEIAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEV 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +  K    ++  +  C    +    P  +  L     G
Sbjct: 274 EEIAAKIPTKMIFPLLLFIWPC--FFIVAIGPSML--LFTSTLG 313


>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
 gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. GAI101]
          Length = 308

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 7/155 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
            ++KR  +    FP+ALD+++  V AG  +  ++  +  +       +  EF  V     
Sbjct: 152 RVEKRKEEITRGFPDALDMMLVCVEAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMK 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G      ++ M     +Q+VS F TV+   +  G ++S+AL   +  +RD++ M+A+  
Sbjct: 212 AGKDKVGVLTDMGDRCGVQDVSSFVTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEA 271

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           A  +  K + A ++ ++P     L+   +P  MN+
Sbjct: 272 ANKLPTKMTLATMMLTVPP---LLIILVAPSVMNI 303


>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
 gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
           sp. TM1035]
          Length = 326

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 4/156 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             +KR  +  D FP++LD+++  + AG  +  ++  +  +       +  EF  V     
Sbjct: 167 RQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALADEFEIVALQIK 226

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G      +  M     +Q++S F TV+      G ++ EAL   +  +RD++ M+A+ +
Sbjct: 227 AGRDKPSVLGEMAERCGVQDISSFVTVLVQSQTFGTSIGEALRVYAGEMRDKRVMRAEEK 286

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K + A ++ ++P  +  LV  +  G M++L
Sbjct: 287 ANKLPTKMTLATMMLTVPPLLIILVGPSVLGIMDLL 322


>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 314

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+LI +R  +  + FP+ALD++   V AGL +  A+A +  +    S  +  E + V  
Sbjct: 148 LKNLISRRQREIFESFPDALDLMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++  +     + +V     ++    + G +++++L   S  LR ++  +A
Sbjct: 208 ELRAGSSKEKALRNLALRTGVDDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    LV    P ++ + 
Sbjct: 268 EEQA----AKIALKLLFPLIFFIFPSLLVVLMGPAFIQIY 303


>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 327

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             +++R       FP+ LD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 167 RRVEERKEAITAGFPDTLDLMLVCVEAGQSLDQAIVRVASEMKSSYPDIAQEFEIVAYEM 226

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   ++ +        +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 227 KAGKDKNQVLRDFGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEE 286

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
            A  +  K + A ++ ++P  +  LV  ++ G M  
Sbjct: 287 AANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMEF 322


>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 307

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + IK+R +  +   P+A+D++  SV AGL    A+  +V +  + +  EF R++    
Sbjct: 150 LGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEKWDNELTREFARMLSEIR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++  +     + +++ F + +    QLG ++++ L   S+ +R R+  +A+ Q
Sbjct: 210 MGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMRMRRRQRAEEQ 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           A     K            +  +V+   P    VL+ 
Sbjct: 270 AHKAPVKM-----------IFPMVFLIFPALYIVLLG 295


>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 307

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 1/156 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I KR        P+ LD++  SV AGL    A++ +V     P+  E         
Sbjct: 149 LKRNIIKRKTAIYHQLPDTLDLLSVSVSAGLGFDQALSYVVEHMEGPLIQELDTTQREIS 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E++ R+       E+  F   I+   +LG ++   +   +  +R       + Q
Sbjct: 209 MGIPRKEALERLAARCECDEIYIFVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQ 268

Query: 121 ALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K     ++  LP     ++    P  ++ L
Sbjct: 269 AQKLSVKMMVPMVLFILPVTFIIILGPAIPSVISAL 304


>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
 gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
           vestfoldensis SKA53]
          Length = 316

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             ++ R    ++ FP++LD+++  V AG  +  ++  +  +       +  EF  V +  
Sbjct: 159 RRVEVRKEAIINAFPDSLDLMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEA 218

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G   +  +  M     + ++S F TV+   +Q G ++S+AL   +  +RD++ M+A+ 
Sbjct: 219 KAGKDKTTVLKDMAERCGVPDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEE 278

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
            A  +  K + A ++ ++P  ++ L+
Sbjct: 279 AANKLPTKMTLATMMLTVPPLMAILI 304


>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
 gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium KLH11]
          Length = 325

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             +++R    ++ FP+ LD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 167 RRVEERKEAIVNGFPDTLDLMLVCVEAGQSLDQAIVRVAAEMKASYPDIALEFEVVAYEM 226

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G      +        +Q+VS F TV+   +  G ++++AL   S  +RD++ M+A+ 
Sbjct: 227 KAGKEKDTVLRDFATRCGVQDVSAFVTVMIQSAAFGTSIADALRVYSDEMRDKRVMRAEE 286

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
            A  +  K + A ++ ++P  +  LV  ++ G M  
Sbjct: 287 AANKLPTKMTLATMMLTVPPLLVILVGPSAKGIMAF 322


>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
 gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
          Length = 303

 Score =  108 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R        P+A+D++V SV AGL    A+  +V +  + +  EF R +    
Sbjct: 147 LSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEKWDNELTREFARTLSEMR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   +++  + R + + +++ F   +    QLG ++S+ L   +  +R R+  +A+  
Sbjct: 207 MGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQMRLRRRQRAQEL 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A     K            +  +V+   P    V++      ++
Sbjct: 267 AHKAPIKM-----------IFPMVFLIFPALYVVILGPAIPRIV 299


>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
 gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
          Length = 314

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +++KKR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYVVKKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  +L + A  
Sbjct: 274 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPSMLFLTATL 312


>gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
           27560]
 gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
           27560]
          Length = 238

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60
           +  A+F   +   L  +   +  G  V + +     +          + SE R +     
Sbjct: 52  RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L   +            L+    F    S+  + GGN++  +  +   +  ++++K ++ 
Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVKEEIN 171

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
               + K    I+  +P  +   +   SPG+++++     G++++ V     L+  +   
Sbjct: 172 VAINDKKLEQRIMTVIPLLLIGYISMASPGFLDIMYKSIMGNIVMTVCLIVYLLAYLWSE 231

Query: 181 LMINFDV 187
            ++   +
Sbjct: 232 KIVKVSI 238


>gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
 gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
          Length = 235

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 80/187 (42%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE------FRRVIETQH 60
           K+       F + +  +  ++  G  + +A +  + +      SE      F+ ++   +
Sbjct: 49  KKKRILTKQFKDGIMAVSFALNVGYSIENAFSQAIDELILLYGSEADIVMKFKNIVVRIN 108

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +L + ++   +   ++++ +F+ V     + GG+L   + N + I++ +  +  +V+
Sbjct: 109 QNENLEDILNDFAKECKIEDIMYFAEVFRYAKRSGGDLISIIRNTADIIQQKTEVATEVE 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    +    ++ ++P  +   +  T+  ++  L  +  G +++       LI  +  +
Sbjct: 169 TIVSGKRMEQKVMSAIPALIILYLKVTAREFVEPLYGNLSGVLIMTCCLGVYLISNVWSK 228

Query: 181 LMINFDV 187
            ++N +V
Sbjct: 229 RIVNIEV 235


>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
 gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
          Length = 311

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R    L   P+ALD++  SV AGL    A+  +  +  + +  EF+RV++   
Sbjct: 147 LDRKIKERKKNILKALPDALDLLCISVEAGLAFDLALQRVAQKWDNELSREFQRVLQDIR 206

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +V    +++V  F + +    QLG ++S+ L   S  LR R+  +A+  
Sbjct: 207 LGRTRREALRDLVTRTGVEDVQTFVSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEA 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A     K            +  +V+   P    V++      ++  +      +G
Sbjct: 267 AQKAPVKM-----------LIPMVFLIFPALFVVILGPAVPRIMQALGVMNSGMG 310


>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
 gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
          Length = 254

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 1/171 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A   +  S+ +GL ++ A+  + G+S +PVR+EF         G+S  +++  +V  
Sbjct: 84  MPEAFGALAFSLGSGLSLAQAMQYVGGRSEEPVRTEFLHASALMTCGVSSVDALDELVTR 143

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +    +      + V  + G +L+  L+  + ++ +R  +   ++  + + + SA ++  
Sbjct: 144 LNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARLVAG 203

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +P  +   +   S  +   +   P G   L VA A  +   +V+R ++  D
Sbjct: 204 MPVIMVGFLSLVSRDFRAGVATGP-GIGSLAVALALNIAAWLVIRKIMQVD 253


>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
 gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
           R11]
          Length = 327

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I++R  +    FP+ALD+++  V AG  +  A+  +  +       +  EF  V    
Sbjct: 167 RRIEERKQEITSGFPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEM 226

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 227 KAGKEKDKVLRDMGTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEE 286

Query: 120 QALSMEAKASAWIIGS-LPFCVSTLV 144
            A  +  K +   +   +P  +  LV
Sbjct: 287 AANKLPTKMTLATMTLTVPPLLIILV 312


>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 311

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ALD++   V AGL    A+  +  +  DP+  EF+RV+    LG    +++  M+  
Sbjct: 166 LPDALDLLCICVEAGLSFDQAMQRLTEKWEDPLSKEFKRVLSDTRLGRPRRDAMKDMIDR 225

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             + +V  F   +    QLG ++   L   S  +R R+  +A+ +A     K        
Sbjct: 226 CGVDDVQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKM------- 278

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHML 164
               +  +V+   P    V++      ++
Sbjct: 279 ----LFPMVFLIFPALFIVILGPAVPRIM 303


>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
 gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
            K+R  + L D P  LD I   V  GL ++ A+ + V +  + P+R+EFR ++     G+
Sbjct: 183 AKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVDKGPEGPLRNEFRIILRDLRSGM 242

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E   R    + +QE+    T I    + GG+L+  L   +   R+ + ++A+  AL 
Sbjct: 243 PRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRREERFLRAEKAALE 302

Query: 124 MEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
              K  A  I+   P     L +     Y+  +
Sbjct: 303 APVKLLAPLIMFIFPIVFIVLTFVIYMKYVQEV 335


>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
           DSS-3]
 gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
           pomeroyi DSS-3]
          Length = 326

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             +  R       FP+ALD+++  V AG  +  ++  +  +       +  EF  V    
Sbjct: 166 RRVDTRKENITRAFPDALDMLLVCVEAGQSLDQSIVRVSKELRASYPDLADEFEMVAYEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     + +VS F TV+   SQ G +++EAL   +  +RD++ M+A+ 
Sbjct: 226 KAGKEKDKVLRDMGTRCGVVDVSSFVTVMIQSSQFGTSIAEALRVYAGEMRDKRVMRAEE 285

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
            A  +  K + A ++ ++P  +  LV  ++ G M++
Sbjct: 286 AANKLPTKMTLATMMLTVPPLLIILVGPSAKGIMDL 321


>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
 gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius sp. 217]
          Length = 325

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             +KR  +  D FP++LD+++  + AG  +  ++  +  +       +  EF  V     
Sbjct: 165 RQQKRQEEIQDGFPDSLDMMLVCIEAGQSMDQSIIRVASEMRASYPALAEEFEIVSLQIK 224

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G      ++ M     +Q+++ F TV+      G ++ EAL   +  +RD++ M+A+ +
Sbjct: 225 AGRDKPSVLNEMAERCGVQDITSFVTVMVQSQTFGTSIGEALRVYAAEMRDKRVMRAEEK 284

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K +   +      +  L+    P  + ++
Sbjct: 285 ANKLPTKMTLATMMLTVPPL--LIILVGPSVLGIM 317


>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
 gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. SK209-2-6]
          Length = 322

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             +++R  K    FP++LD+++  V AG  +  ++  +  +       +  EF  V +  
Sbjct: 162 RRVEERRQKIEQGFPDSLDMMLVCVEAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEM 221

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q++S F TV+      G ++++AL   +  +RD++ M+A+ 
Sbjct: 222 KAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSQSFGTSIADALRVYAGEMRDKRVMRAEE 281

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
            A  +  K + A ++ ++P  +  LV
Sbjct: 282 AANKLPVKMTLATMMLTVPPLLIILV 307


>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
 gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
          Length = 254

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 80/192 (41%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRV 55
           K+   K+       F +A+  ++ S++AG  + +A                 +     R+
Sbjct: 63  KNQKNKKCRLIGIQFKDAIFSVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRI 122

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +     + L + I  M +     ++  F+ V SV  + GGN++E +     ++  +  +
Sbjct: 123 SKGLRNNVPLEKLIFGMGKETTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEV 182

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++ L    +  A I+  +PF +   +  TSPG+ + L ++  G  L+ V      I 
Sbjct: 183 EKEIEVLISAKRLEARIMNMVPFFIIFYISITSPGFFDALYHNVLGICLMAVCMVIYCIS 242

Query: 176 IMVMRLMINFDV 187
             +   ++N  +
Sbjct: 243 YYLSEKIVNISI 254


>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
 gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
          Length = 320

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 82/177 (46%), Gaps = 1/177 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P A   +  ++ +G  ++  +  +   + +PVR+EF R   +   G+S + ++ 
Sbjct: 145 KLASAMPEAFGALAIALGSGHSLAQGMRFVGSHAEEPVRTEFLRASFSIVCGMSATSALD 204

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            ++  +P   +   +  + V  + G  L + LA  S ++ DR  +  +++  + +A+ SA
Sbjct: 205 ELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIELVRRLEVKTAQARMSA 264

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            ++  +P  ++ ++   S  +   L   P G + +  A A      M++R +++  +
Sbjct: 265 RMVALMPVAMTCILALLSKDFQRGLTTAP-GTVSVVAALALNAAAWMIIRRIMDVRI 320


>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 306

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +       ALD++   V AG     A+  +   +  P+  EF RV+    +G S S
Sbjct: 151 RRQEQVATGLAEALDMLTVCVEAGQGFDAALVQVARSTDGPISGEFARVLSEVQIGKSRS 210

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+ + +   + L +V  F + I    +LG  ++  L   +  +R  +  +A+ +A     
Sbjct: 211 EAFAGLGDRVSLSDVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKA----Q 266

Query: 127 KASAWIIGSLPFCVSTLVYFT--SPGYMNVLINDPRGHML 164
           K +  I+  L  C+   ++     PG + ++     G++L
Sbjct: 267 KVTVKILFPLLLCIFPAMFVVILGPGIIRMITTLFGGNLL 306


>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
           [Rhodopirellula baltica SH 1]
 gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
           TadB [Rhodopirellula baltica SH 1]
          Length = 297

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 86/177 (48%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R ++      + LD+++  +R+G   S A+A     ++ P+R +    +    LG S S 
Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               + R MP+  +  FST +SV  + GG+L+  LA+++R+ RDR+ +  ++++   +++
Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            S   +  L + V+ +++   P +M    +   G   +        +GI+ M  +  
Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEWMKEFASSSLGSAAIAATIVLQAVGIIWMNAISR 294


>gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
 gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
          Length = 286

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++ +IKK+  +    F + L+ +  S+ AG  V D+   +             + SE   
Sbjct: 95  IQSIIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAYIISELEL 154

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++      + + + +         +++  F+ V  +  + GGN+ + + +   IL D+  
Sbjct: 155 LLSGMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRSTYEILNDKME 214

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +   ++ +    K    ++  +P  +  ++   SP +       P G M   VA    + 
Sbjct: 215 IAEDIETVVTANKTEQNVMLIMPIGLIGMMKLMSPDFAEN-FVSPSGIMATTVAVIIFVA 273

Query: 175 GIMVMRLMINFDV 187
              + R ++   +
Sbjct: 274 AYFIGRKVLEIKI 286


>gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 238

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 71/190 (37%), Gaps = 6/190 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIE 57
           L  KR       F + L  +  ++ AG  V + V              D +  E   ++ 
Sbjct: 49  LAWKRKQLLHYHFRDFLAALHTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILR 108

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             H    +      + R   L+++  F+ ++S+  + GGN++  L    R L  + + K 
Sbjct: 109 QMHFQKPVEVLFRDLGRRSGLEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQ 168

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           ++  +    K    ++  +P  +   +  T  G++  +  +P G +++ V          
Sbjct: 169 EIDTMIAARKYEQKLMSLMPAGIILYLRLTFQGFIERMYGNPAGVLVMTVCLGVYAGAYF 228

Query: 178 VMRLMINFDV 187
             + + +  V
Sbjct: 229 FGKKLTDIRV 238


>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
 gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseobacter sp. MED193]
          Length = 326

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I +R  +    FP++LD+++  V AG  +  ++  +  +       +  EF  V    
Sbjct: 166 RRIAERKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAHEM 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    + +  M     +Q++S F TV+   +  G +++EAL   +  +RD++ M+A+ 
Sbjct: 226 KAGKDKEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRAEE 285

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
            A  +  K + A ++ ++P  +  LV
Sbjct: 286 AANKLPVKMTLATMMLTVPPLLIILV 311


>gi|291548759|emb|CBL25021.1| Flp pilus assembly protein TadB [Ruminococcus torques L2-14]
          Length = 251

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQHL 61
           +  +F   F +++  +  +++AG  V +A+                +R E+ +++    L
Sbjct: 66  KEQEFRRQFRDSIQTMAGALKAGYSVENAIRETNRDLIGMYDANTRIRKEYGQMVRRLDL 125

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            LS+   ++     +  ++V+ F TV +     GG+    + + +R + ++ + + ++Q 
Sbjct: 126 NLSVVTVLNEFAAEVKQEDVTNFITVYAAAKVSGGDSIAIIRDAARTIGEKIDTEREIQT 185

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +    K    I+  +PF +   +  T   +++VL     G +++ +     L        
Sbjct: 186 MLAAKKLEFEIMSVIPFIMILYMKMTFGEFLSVLYGTWTGCIVMSICLVLYLGAYRFGWR 245

Query: 182 MINFDV 187
           ++  ++
Sbjct: 246 LLQIEI 251


>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
 gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
          Length = 246

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRVIETQH 60
           +   K   +F   L  +  ++ AG  +  A   +  +          ++ E + +I    
Sbjct: 60  RMQKKLNMEFKEMLLSLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLE 119

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +   +        L +V  F+ V +V  + GGNL + +  + + + +R  ++ ++ 
Sbjct: 120 MNTDMKILLKNFAERSGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTIEERLEVEDEID 179

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            +    +    I+ ++PF +   +   +PGYMN L  +  G   + V    + + +   R
Sbjct: 180 TMVTAKRMEYNIMSAMPFVIVLYMRVCNPGYMNALYGNVFGIAAMSVCLIVIFLMVAWGR 239

Query: 181 LMINFDV 187
            + N  V
Sbjct: 240 KITNIRV 246


>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
 gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
           sp. AzwK-3b]
          Length = 328

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             ++R     + FP++LD+++  V AG  +  ++  +  + +     +  E++ V     
Sbjct: 168 RQQQRQEDITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVANQIK 227

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G      ++ M     +Q++S F TV+      G ++++AL   +  +RD++ M+A+ +
Sbjct: 228 AGRDKPSVLNEMAERCGVQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRAEEK 287

Query: 121 ALSMEAKAS-AWIIGSLPFCVSTLV 144
           A  +  K + A ++ ++P  +  LV
Sbjct: 288 ANKLPTKMTLATMMLTVPPLLIILV 312


>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
 gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
          Length = 301

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +    F +ALD++   V +G     A+  +    + P+  EF RV+    +G++  
Sbjct: 149 RRQEQLRKGFADALDMLTVCVESGQGFDAALGQVARNVTGPIAGEFARVLSEFQIGMTRG 208

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   M       EV  F + +    +LG  ++  L   ++ +R  +   A+ +A     
Sbjct: 209 QAFQGMAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKA----Q 264

Query: 127 KASAWIIGSLPFCVSTLVYFT 147
           K +  ++  +  C+  +++  
Sbjct: 265 KVTVKVVFPVLLCIFPVIFVV 285


>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 308

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R      D P+ LD++  SV AGL    A+A +  +    +  EF R ++   
Sbjct: 150 LNRKIAMRKRSIQKDLPDVLDLLTVSVEAGLGFDGALAKLSEKMKGALVDEFTRALQEMR 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E++  M     + ++S F+T +    QLG ++ + L   S  +R+++  + +  
Sbjct: 210 MGVPRREALRAMGLRCDVPDLSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQEL 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           A+    K            +  LV+F  P    V++      + L  +
Sbjct: 270 AMKAPVKM-----------LLPLVFFIFPAIFVVVLGPAIIQIFLTFS 306


>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
 gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
          Length = 314

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + + KR ++     P+ALD++V    +GL  S A+  +  +   S      E   V  
Sbjct: 154 LNYFVNKRQSRIRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++   +V    ++E++   T++S  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KIKAGVEMSDAFDDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  +L + +  
Sbjct: 274 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPSMLSITSTL 312


>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 312

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + HL+  R  +  + FP+ALD++   V AGL    A+  +          +  E R V  
Sbjct: 147 LSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAMMRVADDLQFKSPALADEMRLVNL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G     ++  +     ++EV  F T+IS   + G +++ +L   + +LR R+  +A
Sbjct: 207 ELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERFGTSIAASLRIHAELLRTRRRQRA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +       AK +  ++  L FC+    +V    P  + + 
Sbjct: 267 EE----AAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIY 302


>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 329

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 170 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 230 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  LL ++ A 
Sbjct: 290 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AVGPALLSLSDAL 328


>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
 gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
           [Sulfitobacter sp. EE-36]
          Length = 305

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             + +R  +    FP+ALD+++  V AG  +   +  +  +       +  EF  V    
Sbjct: 148 RRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVRVARELRASYPALAEEFEIVAYEM 207

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G      ++ M     +Q+VS F TV+   +  G ++++AL   +  +RD++ M+A+ 
Sbjct: 208 KAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGTSIADALRVYAAEMRDKRVMRAEE 267

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
            A  +  K + A ++ ++P  +  LV
Sbjct: 268 AANKLPTKMTLATMMLTVPPLLIILV 293


>gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4]
          Length = 245

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
 gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
 gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
          Length = 314

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +KKR        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LNHFVKKRQRMIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S +   +V    L E++    ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMSTAFEELVTRTGLSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  LL ++ A 
Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AVGPALLSLSDAL 313


>gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15]
          Length = 305

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 76/179 (42%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++  +  ++ P+ LD ++RS+  G  V  +V       S        R+      G   
Sbjct: 122 ERQRRQIFEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQGRDY 181

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           +  I        + ++   +      S+ G +L   L  +++ +R R++++ +  A + E
Sbjct: 182 TRVIDEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAE 241

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + +A     +P  ++  +   + G+   L++   G  LL ++    LIGI+ +  +I 
Sbjct: 242 TRFTAVAFAIIPPGLAAYMVILNDGFSAQLLDTNAGQTLLWMSGILQLIGIVFIWRLIQ 300


>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 314

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   ++ R  +  ++FP+A+D+++  V AGL +  A+  +  +    S  +  E   V  
Sbjct: 148 LSRRVENRQREIFNNFPDAIDLLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     +QEV     ++    + G ++ E+L   +  LR ++ ++A
Sbjct: 208 ELRAGSTKERALRNLAIRTGVQEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +       AK    ++  L FC+    L+    P ++ + 
Sbjct: 268 EE----AAAKIPLKLLFPLIFCIFPALLLVLLGPAFIQIY 303


>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
           MSMB43]
          Length = 279

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I+ R  K ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 114 LSRHIRLRQRKIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPIVADELGLMLL 173

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  F  ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 174 EIRSGFAKDAALRNLALRTGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 233

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 234 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 271


>gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 302

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + + +  R  +     P+ LD++  SV AGL +  A+           +P+  E +    
Sbjct: 143 LMYKVNNRKTEIFHTLPDILDLLTVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAR 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  M     +++V  F T++    + G +LS AL   S  LR ++   A
Sbjct: 203 EIRAGKPRGDALRDMAERTDVEDVRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + +A    AK +  I+  L   +    ++    P +  ++
Sbjct: 263 EERA----AKTAIKILFPLILFIFPALMIILIGPAFFKLM 298


>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 297

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R ++      + LD+++  +R+G   S A+A     ++ P+R +    +    LG S S 
Sbjct: 118 RLSRIERQLIDLLDMMIPMLRSGAGASAALAAASEVTASPLRDQIHWCVRRIQLGDSGSS 177

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               + R MP+  +  FST +SV  + GG+L+  LA+++R+ RDR+ +  ++++   +++
Sbjct: 178 VFRELARRMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQ 237

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            S   +  L + V+ +++   P  M    +   G   +        +GI+ M  +  
Sbjct: 238 FSTIAVLLLIYFVALVLWLDRPEVMKEFASSSLGSAAIAATIVLQAVGIVWMNAISR 294


>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum SS9]
          Length = 322

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   KKR     + FP+ALD++V +  AGL    A+  +  +    S  + SE + V  
Sbjct: 161 LQKKAKKRIQTLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDALSPELSSELQIVCR 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+ L  ++S+ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA
Sbjct: 221 KVRLGVPLPIALSQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +A  +  K            +  LV    PG+  V I          + A     G
Sbjct: 281 EEEAAKIGTKM-----------IFPLVTCIWPGFFTVAIGP-------AIIAVLEAFG 320


>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
 gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
          Length = 312

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + H I  R  +  + FP+ALD+I+  V +GL +  A+A +  +       +  E   +  
Sbjct: 147 LSHRIDSRKREIFESFPDALDLIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   ++  +     ++EV     ++    + G N+S++L   +  LR ++ + A
Sbjct: 207 ELRAGSSRERALRNLALRTGVEEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
           +       AK +  ++  L F +    L+    P ++N+
Sbjct: 267 EE----AAAKIAVKLLFPLIFFIFPSMLLVLLGPAFINI 301


>gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 245

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQAVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASREFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1]
          Length = 245

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
                +R  K + +F +A+  +  ++ AG  +  A      +          +  E  ++
Sbjct: 54  NKKRDERAKKLMIEFRDAIQTVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQM 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L  ++ E +  +     ++E+  F+ +     + GG+  + +   +  +  +  +
Sbjct: 114 NAEIKLNRNVEEILHDLAVRSGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V  +    K    I+  +PF +   +   S  +++ L  +  G +++  A    +  
Sbjct: 174 EREVDTVIAGKKLEGKIMSVMPFFILAYLNLASGEFIDPLYGNLAGVLVMSAALLVFVGA 233

Query: 176 IMVMRLMINFDV 187
           + + R + +  V
Sbjct: 234 MAINRRISDIRV 245


>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
 gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 268

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 75/183 (40%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +  +KR     +  P  +D ++R + AG  +  A+   +  +         R+      
Sbjct: 81  NYRYQKRRRLIFESTPEVIDDVIRGIDAGRSLEQALVNALNDAPKVFFPLLFRLRSAVES 140

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  I    +   +  ++F +  +   S  G  +   L  +SR LR ++ M+ +  A
Sbjct: 141 GRDYTGLIDDFSKLYRIPPLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLA 200

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E + +A     LP  +   +   +  + +VL++   G  +L  +   +++G +++  
Sbjct: 201 ATAETRFTAMAFAVLPLVIGASLIGLNESFRDVLLDTESGQKMLMTSIGLIVVGTIIVFR 260

Query: 182 MIN 184
           M+ 
Sbjct: 261 MVQ 263


>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
 gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Aromatoleum aromaticum EbN1]
          Length = 315

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  LI  R  +  + FP+ALD++   V AGL V  A+  +  +     + +  E   V  
Sbjct: 147 LNRLIFVRQREIFETFPDALDLMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL  + ++  +     ++EV  F  ++    + G +++ +L   S +LR R+  +A
Sbjct: 207 ELRAGLERARALRNLAARTGVEEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +       AK +  ++  L F +    ++    P  + V 
Sbjct: 267 EE----AAAKIALKLLFPLIFFIFPSLMLVLLGPAMIQVY 302


>gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 299

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 58/145 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +K+R        P+ LD++   V AG+    A+ ++V +   P+  E  R++    
Sbjct: 137 LRGRVKQRQHAITVALPDLLDMLAVCVSAGMGFDIALTLLVERGEGPLYEEMGRMLHELQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    ++   +        +  F   +    +LG  ++  L   +  +R  +  +A+ +
Sbjct: 197 MGAPREQAFRNLAARNSSDALRGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREE 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
                 K +  ++  +   V  L+ 
Sbjct: 257 GAKAATKITLIVVVLVTPSVLCLII 281


>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 328

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +  +  KR  K     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG   SE +S +     + ++   ++++    + G ++++AL   S  +R ++   A
Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A     K            +  LV F  PG   VL+ 
Sbjct: 288 EEKAAKTAVKM-----------IFPLVLFIFPGIFVVLVG 316


>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacterales bacterium HTCC2083]
 gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 323

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
             I  R  +    FP++LD+++  V AG  +  ++  +  +       +  E+  V +  
Sbjct: 165 RRIDTRKEQIESGFPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEM 224

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G      ++ M     +Q+V+ F TV+   +  G +++EAL   +  +RD++ M+A+ 
Sbjct: 225 KAGKDKIAVLNDMSERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEE 284

Query: 120 QALSMEAKAS-AWIIGSLPFCVSTLV 144
           +A  +  K + A ++ ++P  +  LV
Sbjct: 285 KANKLPTKMTLATMMLTVPPLLIILV 310


>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
 gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           alginolyticus 40B]
          Length = 313

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  +V F  P +  V      G  L+ +A AF
Sbjct: 273 EEIAAKIPVKM-----------MFPMVLFIWPCFFIV----AIGPALISLAEAF 311


>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 314

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +I KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMIDKRQRAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEVDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVYRTGLDELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNV 154
           +     M AK    ++  +   +     +    P  +++
Sbjct: 275 EE----MAAKIPVKMMFPMVLFIWPCFFIVAIGPALISL 309


>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 326

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   IK R    ++  P+ALD++V  V AG+ +  A + +  + +     +  E   VI 
Sbjct: 163 LSRRIKARRLDIINSLPDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVIL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S +E++  +   + L++V+   T+I      G ++S  L   S  +R  +  +A
Sbjct: 223 ELRAGKSRAEALKNLAARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155
           +     + AK    ++  L FC+   ++     P ++ ++
Sbjct: 283 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 318


>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
 gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
           [Ralstonia solanacearum UW551]
 gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
          Length = 314

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + +A    AK S  I+  L FC+     V    P  + V+
Sbjct: 269 EERA----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
 gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
          Length = 315

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 155 LRRMVNKRQKAIRAGIPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 215 KIQAGKPMPEALRELVVRTGLEEIMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  +V F  P +  V      G  L+ +A AF
Sbjct: 275 EEVAAKIPVKM-----------MFPMVLFIWPCFFIV----AVGPALITLAEAF 313


>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 275

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 110 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 169

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 170 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 229

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 230 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 267


>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
 gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
           1]
          Length = 328

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +  +  KR  K     P+ALD++V  V AGL +  A+  +  +       +  EF     
Sbjct: 168 LGFMASKRREKIFLGLPDALDLMVVCVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNH 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG   SE +S +     + ++   ++++    + G ++++AL   S  +R ++   A
Sbjct: 228 QLQLGSPRSEVLSGLGYRSGVDDLKQLASILIQADKFGSSVAQALRVQSDSMRTKRRQIA 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A     K            +  LV F  PG   VL+ 
Sbjct: 288 EEKAAKTAVKM-----------IFPLVLFIFPGIFVVLVG 316


>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
 gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
           Ex25]
 gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio sp. Ex25]
          Length = 313

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADELVISHPELADEIDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + E++  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIKAGKPMPEALRELVLRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  +V F  P +  V      G  L+ +A AF
Sbjct: 273 EEIAAKIPVKM-----------MFPMVLFIWPCFFIV----AIGPALISLAEAF 311


>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 317

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  I  R  K ++ FP+ALD++V  V AG+ +  A+  +  +      P+  EFR +  
Sbjct: 156 LRLKIGARKEKIMEGFPDALDLMVICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNM 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G S  E++  M     L +V+   T++    Q G ++ +AL   S  +R ++  +A
Sbjct: 216 EMRMGKSRREALRNMANRTELDDVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRA 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K    +I  +   +  ++    P  + V 
Sbjct: 276 EEKAAKLPLKLLFPLIFFIFPSLFVVI--MGPAMIQVF 311


>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 291

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++  +KR      + PNALD ++ SV+AGL    A+         P+  E  R ++   
Sbjct: 135 LRNRAQKRREAIRLELPNALDQMLISVQAGLGFETAMGRAGENGRGPLAEELIRTLQDIQ 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +   + +  V  F   +      G  ++  L   ++ +R ++   A+  
Sbjct: 195 VGRSRKEAYLALSERVDVPSVRTFVRAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEH 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A+ M  K            +  L++F  P    VL+      ++
Sbjct: 255 AMKMPVKM-----------LFPLIFFILPTLFIVLLGPAVLQIM 287


>gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273]
 gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273]
          Length = 315

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 71/167 (42%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  + +KR  +  D  P+ +D++V    +G+ +  A+  I  + +     +  EF     
Sbjct: 151 LGFITRKRIGRLRDSLPDMIDLMVICTESGMGIDAAITRISKEMAGTNPDLAQEFYLSAL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L+++    +V++   + G +L+E+L   S ++R R+  +A
Sbjct: 211 EIRAGATRIEALRNLALRSRLEDLDDLVSVLAQADRFGTSLAESLRVQSDMMRSRRTQRA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +  A  +  K            +  L+ F  P  M VL+      ++
Sbjct: 271 EELAAKIPVKM-----------LLPLILFIFPTLMMVLLGPAVIQVM 306


>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 291

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR  K  D +P+A+D I   VRAGL + +A+A +  +  + +R  F R  E   
Sbjct: 100 IRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEALAQLAVRGPEELRPPFARFAEDYR 159

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                 + + R+   M           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 160 ATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDLGRLLRTLSAFLREDARTRAEL 219

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  ++              P G ++L   A   ++   +M
Sbjct: 220 EARQSWTINAARLAVAAPWVVLAMLALRGGSL--QAYATPTGWLVLAFGAGLCIVAYRLM 277

Query: 180 RLMINF 185
             +   
Sbjct: 278 VWIGRL 283


>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 296

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R      + PN LD ++ SV AGL    A+A      S P+  E  R ++    G 
Sbjct: 140 RAAERQKAIQTELPNTLDQMLISVEAGLGFEGAMARAGQNGSGPLAMEMLRTLQDMQAGR 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E+   +   + + ++  F   I      G  ++  L   ++ +R ++  +A+ QA+ 
Sbjct: 200 SRKEAYVALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           +  K    ++  L FC+  +++     P  +NV+ N
Sbjct: 260 LPVK----VLFPLMFCILPVLFIVIMGPAVLNVMTN 291


>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 315

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  + KR        P+ALD++V S+ AGL +  A+  +  +   S   +  E + V  
Sbjct: 149 LEKRVAKRQETLRLSLPDALDLLVVSIEAGLGLDQAIQHVARELYASHPQLSDEMQLVTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   SE++          E      ++    + G ++ E+L   S  LR R+  +A
Sbjct: 209 EMRAGKRRSEALRNFAERTGEAEFRKLVAILIQNDRFGTSMGESLRTHSDFLRTRRRQEA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS--PGYMNVL 155
           + +A     K    ++  + F +   +   +  PG + + 
Sbjct: 269 EERA----GKVGVKLVFPIFFFILPSMLVVAAGPGILQIF 304


>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
          Length = 318

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           +  A  +  K    ++  +  C   +
Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPCFFIV 303


>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
 gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio furnissii CIP 102972]
          Length = 318

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++KKR ++     P+ALD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 158 LDRMVKKRKSRIKGGIPDALDLLVVCTESGLGFNAALRRVADELMISHPDLADELDTVCA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +SE+++++V    L E+S   ++++  S++GG++S+ L + +   RD++N + 
Sbjct: 218 KIKAGVEMSEAMAQLVERTGLTEISGLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEI 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           +  A  +  K    ++  +  C   +
Sbjct: 278 EEIAAKIPTKMIFPLLLFIWPCFFIV 303


>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
 gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
          Length = 313

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++ KR +K     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 153 LGFMVDKRQSKIRGGIPDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCV 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G+ +S++ + +++   L+E++   T+++  S++GG+LS+ L   +   RD++N + 
Sbjct: 213 KVNAGVEMSDAFNDLIQRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEI 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  +L   A  
Sbjct: 273 EEVAAKIPTKM-----------IFPLLIFIWPCFFIV----AIGPSMLLFTATM 311


>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
 gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
          Length = 314

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + +A    AK S  I+  L FC+     V    P  + V+
Sbjct: 269 EERA----AKISTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 287

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L KKR    +   P  LD +  S+ AGL ++ A++  V +    P+R EF +VI   
Sbjct: 131 LNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVERGPAGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S +++   M   + + EV+   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQSDQRRIERFQRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +AL    K    +I  +      ++ F  P  M  +  
Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286


>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 323

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + H + +R     ++FP+ +D++   V AGL +  A+  +  + +     +  E + ++ 
Sbjct: 157 LSHKVAERQRAVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L ++L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    L+    P ++ + 
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312


>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
           piezotolerans WP3]
 gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
           [Shewanella piezotolerans WP3]
          Length = 321

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L K+R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 159 LQSLAKRRMRLLRVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 219 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + QA    AK +  +I  +  C+  S  +    P  + V+
Sbjct: 279 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 314


>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 313

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ ++ KR        P+ LD++V    +GL  + A+  +  +   S   +  E   V  
Sbjct: 153 LRRMVNKRQQAIRAGVPDMLDLLVVCTESGLGFNAALRRVADEIVISHPELADEVDTVCN 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  + ES+  +V    L+E+    +++S  S++GG+L  +L   +   RD++   A
Sbjct: 213 KIQAGKPMPESLRELVVRTGLEELMGLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  +V F  P +  V      G  L+ +A AF
Sbjct: 273 EEIAAKIPVKM-----------MFPMVIFIWPCFFIV----AIGPALISLAEAF 311


>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 313

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + +KR  +  D  P+ +D++V    +G+ +  A+A I  + +     +  EF   + 
Sbjct: 153 LRFITQKRHERMRDSLPDMIDLMVICTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L+++    T+     + G  +++AL   S +LR R+  +A
Sbjct: 213 EIRAGATRIEALRNLALRTRLKDMDDLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K +  ++  +    + L+    P  + ++
Sbjct: 273 EEMAAKIPVKMTVPLVLFI--FPTLLMVLLGPAIIQIM 308


>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
 gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
          Length = 314

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELTISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  LL ++ A 
Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPALLSLSDAL 313


>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 306

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  +DI+  SV AGL    A+  +  ++  P+  EFR       LG    E+++R+  
Sbjct: 162 QLPEVMDILSVSVVAGLSFDQALGHVTTKAEGPLIEEFRICQREIMLGKPRKEALNRLSE 221

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA-WII 133
              ++EV  F+  I    +LG +L   L + S+++R       + +A  +  K     ++
Sbjct: 222 RTEIEEVKSFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVL 281

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
              P     L+    P  ++ L
Sbjct: 282 FIFPVIFIILLGPAVPTIIDAL 303


>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
 gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
          Length = 314

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H +K+R        P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 155 LHHFVKERQRTIRAGVPDALDLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCA 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +  +   +V    L E+     ++S  S++GG+LS+ L + +   RD++N + 
Sbjct: 215 KIKAGVEMHTAFDELVARTGLTEIRGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEV 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L+ F  P +  V      G  LL ++ A 
Sbjct: 275 EEIAAKIPTKM-----------IFPLLLFIWPCFFIV----AIGPALLSLSDAL 313


>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 320

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L K+R  K    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 158 LQSLSKRRMRKLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   R+++   A
Sbjct: 218 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + QA    AK +  +I  +  C+  S  +    P  + V+
Sbjct: 278 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313


>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 304

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K     R  +  D  P+ LD++  SV AGL    A+  +V +    +  E  R+++   
Sbjct: 149 LKAKSAARQEEIQDTLPDVLDLLTVSVEAGLGFDAAMVKVVEKIKGVLSQECARMLQEVK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    +++  +     +++V  F   +    QLG ++   L   S  +R ++  +A+ +
Sbjct: 209 MGKPRRDALKDLGVRTGVEDVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQK 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K    I   +    +  +    P  + VL
Sbjct: 269 AMKAPVKM--LIPLIIFIFPTIFIVVLGPAAIQVL 301


>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
           25196]
          Length = 313

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L+ +R  +  + FP+A+D++   V AGL +  A+  +  +    S  + SE   V  
Sbjct: 148 LGRLVLQRKRELFESFPDAIDLMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     ++E+    +++    + G +++ +L   S  LR  + ++A
Sbjct: 208 ELRAGRTREQALRNLAMRTGVEEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +       AK +  ++  L F +    L+    P ++N+ 
Sbjct: 268 EE----AAAKIALKLLFPLIFFIFPSLLLVLMGPAFINIY 303


>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 313

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +   IK+R     + FP++LD+I+  V AGL +  AV  +V    D    +  E+  +  
Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A
Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    AK    ++  L FC+   +Y  
Sbjct: 269 EERA----AKIGTKVLFPLIFCLFPALYVV 294


>gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 285

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 76/185 (41%), Gaps = 12/185 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIETQHLGLS 64
               F  AL  +  S+ AG  V +     V          S  +  E + ++     G  
Sbjct: 104 LNLHFKQALYSLSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEP 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++    R   +++++ F+ V S   + GG+L E +   S ++ ++ +++ ++  +  
Sbjct: 164 IEVALQDFARRAGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIA 223

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--IMVMRLM 182
           + +  +  + + PF +   +  TSP YM  + +   G   +    A   +G   + +  M
Sbjct: 224 QKRFESKALLAAPFLLLLFMNMTSPDYMEPMYS---GSGFMISTFALAALGGCFLWITKM 280

Query: 183 INFDV 187
           +N  V
Sbjct: 281 MNIKV 285


>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 296

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 71/152 (46%), Gaps = 6/152 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +  +  P+ +D++V SV AGL +  A++ +  +   P+   F R +    LG S 
Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRGPMGENFARALHEISLGESR 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +   ++  +P++EV  F   +    +LG  +SE L + +  L+  + +KA+  A    
Sbjct: 203 QAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHARKAP 262

Query: 126 AKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
            K    I+  +   +     V    P +++++
Sbjct: 263 IK----ILFPMILFIFPSLFVVILGPAFLSIM 290


>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 313

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +   IK+R     + FP++LD+I+  V AGL +  AV  +V    D    +  E+  +  
Sbjct: 149 LAMKIKRRKRDIFEAFPDSLDLIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++        +++VS    ++    + G +++E+L   S +LR ++ M A
Sbjct: 209 ELRAGLAREKALRNFAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    AK    ++  L FC+   +Y  
Sbjct: 269 EERA----AKIGTKVLFPLIFCLFPALYVV 294


>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
 gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Photobacterium profundum 3TCK]
          Length = 224

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++   KKR  K  + FP+ALD++V +  AGL    A+  +  +       + +E + V  
Sbjct: 63  LQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNELQIVCR 122

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+ +  ++++ +    L E+    ++IS   +LG ++ + L   +   RDR+  KA
Sbjct: 123 KVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKA 182

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + +A    AK    +I  L  C+     V    P  + VL
Sbjct: 183 EEEA----AKIGTKMIFPLVTCIWPGFFVVAVGPAIIAVL 218


>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 284

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R  +  + +P A+D +  +VRAG+ + DA+A +  +  +P+R  F +      +  
Sbjct: 96  RARRRQRELAEVWPEAVDNLTSAVRAGMSLPDALAGLGSRGPEPLRDAFDQFALDYQVTG 155

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQAL 122
              E + R+   +           + +  ++ GG L   L NLS  LRD    +++++A 
Sbjct: 156 RFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGRLLRNLSSYLRDDARTRSELEAR 215

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                  A +  + P+ V   + F S   +      P G ++L V A   ++   +M  +
Sbjct: 216 QAWTVNGARLAVASPWLVLLFMSFQSE--VIHRYASPGGVLVLAVGAGACVVAYRLMMRI 273

Query: 183 INF 185
              
Sbjct: 274 GRL 276


>gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54]
 gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 283

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  +    FP+A+D+++  V AG+ +  A+  +  +   +S  +  EF+ +  
Sbjct: 122 LKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKEFKILSL 181

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +E +  + +   L+++    +++    + G  ++ AL   +  +R ++  + 
Sbjct: 182 ELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQKRYSRL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYMNVL 155
           +     M AK    ++  L F +   ++     P  + V 
Sbjct: 242 EE----MAAKLPVKLVIPLIFFIFPALFLVILGPAMIRVF 277


>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 273

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR  +     P+ LD++  +V AGL    A+A +       + SEF+  +    LG S
Sbjct: 117 KRKRQEEIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPGVLASEFQLALRQMELGTS 176

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + +      + +  F T +    +LG  LS+ L  LS  +R       + +A  +
Sbjct: 177 RRDAFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHL 236

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             + +A    ++   +  ++
Sbjct: 237 NPRVTAVTAATMLPGLLLII 256


>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 301

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +IK R  +  ++FP+A D+++  V AGL +  A+  +  +    S+ +  E      
Sbjct: 135 LRMMIKSRQREIFENFPDAADLMLVCVEAGLGLDAALVKVTEEIRVKSEALAQELHWTNL 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     ++E+  F+T+++   + G ++ E+L   S  LR ++ ++A
Sbjct: 195 EMRAGSTREKSLRNLALRTGVEEIGTFATMLTQADRFGTSIGESLRVFSEDLRHKRQVRA 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +  C+S ++   +P  + ++
Sbjct: 255 EELAAKVPTKMLLPLVVCIFPCISAVI--LTPAAIRIV 290


>gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 306

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 73/183 (39%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   +++     +  P  +D  +R + AG  +  ++      +    +    R+      
Sbjct: 119 RFRFQQQRRAIFESLPGIMDSTLRYMGAGRSLEASLLESFQDAPPVFQPLTFRLRSAVES 178

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +       R   +  +   S  +   ++ G ++   L  ++  LR ++ ++ +  A
Sbjct: 179 GRDYTGLFDDFARLYRVPSLVLVSIALRTSARFGSSIRPVLQQVANSLRSQQELRREFLA 238

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + E + +A     LP  ++  +   +  Y +VL+    GH +L +A     IG++++  
Sbjct: 239 STAETRFTAGAFTLLPLGMAVYMMLINEKYADVLLRTDTGHTMLIIAGVLQGIGVVIIWR 298

Query: 182 MIN 184
           M+ 
Sbjct: 299 MVQ 301


>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
 gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 296

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 131 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 190

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 191 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 250

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 251 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 288


>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 320

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L  +R  +    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 158 LQSLANRRMRQLRVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCS 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++E L   S   RD++   A
Sbjct: 218 KVRAGLTIKVALQEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + QA    AK +  +I  +  C+  S  +    P  + V+
Sbjct: 278 EEQA----AKLAVKMIFPMMCCIWPSFFIVAVGPAVLKVM 313


>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
 gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
           8797]
          Length = 308

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ LIK R  +     P+ALD++V  V AGL +  A+  +  +       V SEF     
Sbjct: 147 LRLLIKGRVERIFLSLPDALDLLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + ++   + ++    + G ++++AL   S  +R +++  A
Sbjct: 207 QLQMGRPRREVLHDLGIRSGVDDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + QA     K            +  LV F  PG   VL         +G AA  M+ G++
Sbjct: 267 EEQAAMTAVKM-----------IFPLVLFIFPGIFVVL---------VGPAAIMMINGLL 306


>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 287

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L KKR A  +   P  LD +  S+ AGL ++ A++  V +    P+R EF +VI   
Sbjct: 131 LNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVERGPSGPLRIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S ++S   M   + + E++   + ++   + G +L + L   S   R  +  +A+ 
Sbjct: 191 RAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQSDQRRIERFQRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +AL    K    +I  +      ++ F  P  M  +  
Sbjct: 251 KALEAPVKLVFPLIVFIFPVTFMILAF--PIAMKFMYE 286


>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
 gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
           SI]
          Length = 307

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  +     P+ +D++  SV AGL    A+  +  +    +  EF ++++   
Sbjct: 150 LNKKILDRKKEIEKSLPDVMDLLTVSVEAGLSFDGALMKVTEKKRGVLSEEFTKMLQEIK 209

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  + R + + ++S F+  + +  QLG ++   L   S  +R ++   A+  
Sbjct: 210 IGRPRLEALRDLSRRLDVDDLSAFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEM 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           A+    K            +  +V F  P    VL+      +
Sbjct: 270 AMKAPVKM-----------LIPMVLFIFPAIFVVLLGPAVIQI 301


>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 302

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDP-VRSEFRRVIE 57
           + H I  R  K  +  P+ALD++V  V AGL ++ A+  +      ++P +  EF  +  
Sbjct: 141 LNHKISARQKKISEGLPDALDLLVVCVEAGLGLNAAMKRVADDLKMNNPVLSLEFNMLNL 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   +++  +     ++E+S    ++    + G ++++AL   S  +R  +  + 
Sbjct: 201 EILAGLDREQALRNLAERTGVEELSTLCAILIQADRFGTSIAQALRVQSDTMRTNRRQRL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +     + A+    ++  L   +   +   
Sbjct: 261 EE----LAARTPVKLVFPLILFIFPALVVV 286


>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 313

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 268 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 305


>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
 gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
 gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
 gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
 gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
 gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
 gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
 gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
 gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
 gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Burkholderia pseudomallei 1710b]
 gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 319

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FST++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311


>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 303

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMASRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTDEIRIKSEALAEELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     + E+  F+ +++   + G ++ E+L   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           +  A  +  K    ++  +   +  ++    P  + ++       M+L +    M
Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--IMVVLGPAIIRIV------RMILPMMGGSM 303


>gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
 gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
          Length = 313

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + ++R  +  +  P+ ++++V    AG+ +  A   I  + +     +  EF     
Sbjct: 152 LRFITQRRIERMRNGLPDMIELMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSL 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  M   + L+E+    +V+    + G +L+++L   S ++R R++ +A
Sbjct: 212 EMRAGATRLDALRNMALRVGLEELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRA 271

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +  A  +  K            +  L+ F  P  + VL+      +L
Sbjct: 272 EELANKVPVKM-----------LLPLILFIFPTLLMVLLGPAIIQLL 307


>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 319

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L K R  +     P+ LD +  +++AG+P+  A+  +V     P+  E +R      
Sbjct: 156 INMLAKSRQEQIALGLPDFLDGMSVTLQAGVPLDAAMNQVVNHMEGPLAEELQRFNRELE 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   E+  R+V     +E+      +   S+LG  ++     ++  +R  +  K K +
Sbjct: 216 LGVPREEAYHRLVNRNECEELETLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEK 275

Query: 121 ALSMEAKA----SAWIIGSLPFCVSTLVYFT---SPGYM 152
           A     K     S  I   +   +  L+      +P ++
Sbjct: 276 AAKASPKVTLVTSFIITPGVMLAILGLIVLNIIYNPQFI 314


>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 324

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R     ++FP+ +D++   V AGL +  A+  +  + +     +  E + ++ 
Sbjct: 157 LARKVAQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    L+    P ++ + 
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312


>gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273]
 gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273]
          Length = 313

 Score =  101 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + ++R  +  +  P+ +D++V    +G+ +  A+A I  + +     +  EF   + 
Sbjct: 153 LRFITQQRHERMRNSLPDMIDLMVVCTESGMGIDSAIARISREMARGNPDLAQEFYLSVL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +     L++++   T+     + G  ++E+L   S +LR R+  +A
Sbjct: 213 EIRAGATRIEALRNLALRTNLKDMNDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +  A  +  K +             LV F  P  + VL+      ++
Sbjct: 273 EEMAAKIPVKMT-----------IPLVLFIFPTLLMVLLGPAIIQIM 308


>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 284

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   IK+R  + ++  P+ALD++V  V AG+ +  A+A +  +   +S  +  E +  I 
Sbjct: 121 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 180

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A
Sbjct: 181 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 240

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155
           +     + AK    ++  L FC+   ++     P ++ ++
Sbjct: 241 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 276


>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
           Flp pilus synthesis [Cupriavidus metallidurans CH34]
          Length = 323

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   +  R     ++FP+ +D++   V AGL +  A+  +  + +     +  E + ++ 
Sbjct: 157 LSRKVTARQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++S +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALSNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    L+    P ++ + 
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPTLLLVLLGPAFIQIY 312


>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 318

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 76/167 (45%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M+ L++ R  K  +D P+ALD++   V AGL +  A+  +  +    S  ++ EF  V+ 
Sbjct: 150 MRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMLRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           + QA  +  K            +  L++F  P  + VL+      ++
Sbjct: 270 EEQAAKIALKL-----------LFPLMFFIFPTLLAVLVGPSAIQIV 305


>gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7]
          Length = 240

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA------VIVGQSSDPVRSEFRRV 55
           +   K R      +F +A  ++  S  AG  +  A+            S   +  EF R+
Sbjct: 49  RMREKSRKQMLWHEFKDAAAMLYSSTAAGGTLEKALRDTCCDMKTSDSSYQVLLPEFERI 108

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                   SL   +         +++++F  V++V  + GG+LS  + + +  +  R  +
Sbjct: 109 CMHLDQNRSLESVLEDFAVRSEDEDIAYFVRVLTVARKSGGSLSSIIRHTADTMNLRMEI 168

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            ++++ +    +    I+  +P  +   +   S  YMN+L     G +++  A       
Sbjct: 169 NSEIETILAGKRGEWRIMLIVPPGILCYMNMCSSEYMNILYTGLTGRLVMTAALMVYAAA 228

Query: 176 IMVMRLMINFDV 187
           +     +++  V
Sbjct: 229 LWTGHKILDIHV 240


>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
 gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
          Length = 315

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIET 58
           +    + +  +   +F   ++ I   +  G  + +A+  I+ +  +S  + +E   V + 
Sbjct: 128 VNKRAETKKEELTLEFLEKINEISAHLSVGKTIPNALDEIIKEQNTSQVLINELITVKQN 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +LG  LS+S      ++ ++E+  F+  +SV  + GGN+ E L       + +  +K  
Sbjct: 188 LNLGYPLSKSFMLAYEHLQIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNT 247

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +      K S  +   +P     LV F +P +         G ++  +A +F+L GI +
Sbjct: 248 QKVYISSLKTSQKLTVGIPLGFIVLVIFINPSFFGDFYGTAVGELVGIIAISFLLFGIFL 307

Query: 179 MRLMINFD 186
              +    
Sbjct: 308 SNKIAKLK 315


>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 322

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
             +R  + +  FP+ALD+++  V AGL +  A+  +  +   S   V +   +V+     
Sbjct: 162 ASRRQEEIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRA 221

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A+ +A
Sbjct: 222 GRSRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKA 281

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF 146
             +    S  ++  +   +  ++  
Sbjct: 282 HRLPVLLSVPLVACMLPVMIGVLML 306


>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
          Length = 319

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311


>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 313

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 148 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 208 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 268 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 305


>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
 gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
           RCH1]
          Length = 323

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   IK+R  + ++  P+ALD++V  V AG+ +  A+A +  +   +S  +  E +  I 
Sbjct: 160 LSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSIL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S ++++  +   + +++V+   T+I      G +++  L   S  +R  +  +A
Sbjct: 220 ELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155
           +     + AK    ++  L FC+   ++     P ++ ++
Sbjct: 280 EE----IAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLM 315


>gi|302335343|ref|YP_003800550.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
 gi|301319183|gb|ADK67670.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
          Length = 312

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 1/181 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +R      + P     +  ++ +G  +S AV  +       V   F R     H G 
Sbjct: 130 LESRRRRAIEREMPAVFRTLAMAMGSGETLSQAVDYLAAHGGGEVAKAFTRTSLRMHCGY 189

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ES+  + R +    V    T + +  + G  L       +R++  +   +  +   +
Sbjct: 190 PARESLDLLARELDAPGVGLLVTALLISQRTGSPLRSLFRRSARLVERQGEFERMLGVKT 249

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + S  ++  LP  +  L+   S  +   L + P G   +  AA      I+++R ++
Sbjct: 250 AQVRLSVRVVSGLPVIMIALLSLISSDFQRGL-STPVGAACILAAALMDGAAILIIRRLM 308

Query: 184 N 184
            
Sbjct: 309 R 309


>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
          Length = 319

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIAARQRMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKETALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311


>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
 gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
          Length = 319

 Score =  100 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   V AGL +  A+  +  +    S  V  E   ++ 
Sbjct: 154 LARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +      ++V  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 214 EMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 274 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 311


>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 306

 Score =  100 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 61/128 (47%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  K L D P  LD+I  SV AGL    A+A ++      +  EF + ++   
Sbjct: 148 LSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRGELCDEFAKSLKEIT 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    ++  M     ++E+S F + +    +LG +LS+ L   S  LR+ +   ++ +
Sbjct: 208 MGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRRQVSREK 267

Query: 121 ALSMEAKA 128
           A+    K 
Sbjct: 268 AMKAPIKM 275


>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 303

 Score =  100 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMALRRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTEEIRIKSEALAEELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     + E+  F+ +++   + G ++ E+L   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKALRNLAARTGVDEIHTFTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  A  +  K    ++  +   +  +V 
Sbjct: 257 EELAAKIPTKMLFPLVTCIFPAIIMVVL 284


>gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 318

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 14/160 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +L  +R  +     P+ALD++V  V AGL +  A   I  +       +  EF     
Sbjct: 157 LGYLKSRRQEQIFLTLPDALDLMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANF 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + ++   + V+    + G +++ AL   S  +R ++   A
Sbjct: 217 QIRMGRPRREVLRDLGVRTGVADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A     K            +  LV F  PG   VL+ 
Sbjct: 277 EEKAAKTAVKL-----------LFPLVLFIFPGIFVVLVG 305


>gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 326

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR  +      + LD++V  +  G+ +  A++ +  +   P   + +E   V+ 
Sbjct: 155 LAYYRAKRQRQLRTSLADFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVLR 214

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G S+  +++ +     L+E+   +T +    + G  +++A+  LS +LR ++  +A
Sbjct: 215 EVEVGRSIEVALAHLAERTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETRA 274

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A     K    I   L    +  V    P  + +
Sbjct: 275 EERAQKASVKI--LIPTLLFIFPTVFVVLAGPAAIQI 309


>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
 gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
          Length = 314

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++ KR ++     P+ALD++V    +GL  + A+  +  +   S      E   V  
Sbjct: 154 LSMMVDKRQSRIRSGIPDALDLLVVCTESGLGFNAALRRVADELTISHPDFADELDTVCV 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ +S++ + +++   L E++   T+++  S++GG+LS+ L   +   RD++N + 
Sbjct: 214 KISAGVEMSDAFNDLIKRTGLSEIAGLVTMLAHASRIGGSLSQTLREYTEDYRDKRNQEI 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +  A  +  K    ++  +  C    +    P  +  L     G
Sbjct: 274 EEIAAKIPTKMIFPLLIFIWPC--FFIVAIGPSML--LFTSTMG 313


>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
           [Roseovarius nubinhibens ISM]
 gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily  protein
           [Roseovarius nubinhibens ISM]
          Length = 323

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70
           D FP++LD+++  V AG  +  ++  +  +       +  E++ V +    G   +  ++
Sbjct: 172 DGFPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLN 231

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            M     +Q++S F TV+      G ++ +AL   +  +RD++ M+A+ +A  +  K + 
Sbjct: 232 EMGDRCGVQDISSFVTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTL 291

Query: 131 WIIGS-LPFCVSTLVYFTSPGYMNVLI 156
             +G  +P  +  LV  +  G M+++ 
Sbjct: 292 CTMGLTVPPLLIILVGPSVLGIMDLMT 318


>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
 gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
          Length = 326

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +  +++ R  + +   P+ALD++V  V AGL +      +  +       +  EF     
Sbjct: 162 LGFVVRSRQNRIMRALPDALDLMVVCVEAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNL 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   +E    M     + EVS   T++   S+ G +L++AL   S  +R ++   A
Sbjct: 222 EIRAGKPRNECFKNMSLRTGVPEVSNLMTILIQTSRFGTSLAKALRVHSDAMRIKRRQIA 281

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           + +A    AK++  +I  L F +   ++     PG + ++
Sbjct: 282 EEKA----AKSTVKLIFPLVFFIFPAIFVVLVGPGVIRII 317


>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 285

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKR+A     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRHVFRDFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G     S++++   +           + +  ++GG +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRESARTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L       L+   +M
Sbjct: 214 EARQSWTINAARLAVAAPWIVMILL-ATRPEAVQA-YNTAAGAAVLVGGLVVSLVCYSIM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
 gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
          Length = 291

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  L ++R  + L +FP  LD+    V AGL +  A+        D P+R E R  +   
Sbjct: 134 LHGLARQRQFQMLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPDGPLRGELRHALADM 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+   +++  +     L  V    T ++   QLG +L   L + S   R  + ++A+ 
Sbjct: 194 RAGVPRIQALQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEK 253

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            AL    K    ++  +  C   ++ F
Sbjct: 254 LALEAPVKMLFPMVFCIFPCTFLIIGF 280


>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
           taiwanensis LMG 19424]
          Length = 324

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R     ++FP+ +D++   V AGL +  A+  +  + +     +  E + ++ 
Sbjct: 157 LARKVSQRQRTVFEEFPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  ++++ +     +++V  F++++    + G +L E+L  LS +LR ++ M+A
Sbjct: 217 ELRSGFSKEKALTNLSLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    L+    P ++ + 
Sbjct: 277 EEQA----AKIALKLLFPLIFTIFPSLLLVLLGPAFIQIY 312


>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
 gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
           protein [Shewanella benthica KT99]
          Length = 322

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++HL  +R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQHLASRRMKNLRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L+++   ++ IS   +LG  ++  L   S   RD++   A
Sbjct: 220 KVRAGLTIKVALQEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + QA    AK +  +I  +  C+  S  +    P  + V+
Sbjct: 280 EEQA----AKLAVKMIFPMMLCIWPSFFIVAVGPAVLKVM 315


>gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 303

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 76/187 (40%), Gaps = 7/187 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH 60
           KR       F + LD +  SV +G     A                 +  E   +++ Q 
Sbjct: 118 KRRNDIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIVQELTLILDGQK 177

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             + +S S+    +   ++E+  F+ V  +  + GG+ S+ + +   IL  + N++ +++
Sbjct: 178 NFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRDSYEILYSKINIEMEIE 237

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                 +    I+ ++PF +  ++   SP         P G + + V    ++I  ++ R
Sbjct: 238 TKIAATRNELNIMLAMPFILVGMMKSMSPD-FAYNFRTPTGALGITVGLVIVVISYLLGR 296

Query: 181 LMINFDV 187
            + + +V
Sbjct: 297 KITSIEV 303


>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
 gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
          Length = 322

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++L  +R  +    FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 160 LQNLASRRMKELRAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCS 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  ++        L ++   ++ IS   +LG  ++  L   S   RD++  +A
Sbjct: 220 KVRAGLTIKVALQEFTDRTGLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA  +  K        L    S  +    P  + V+
Sbjct: 280 EEQAAKLAVKM--IFPMMLGIWPSFFIVAVGPAVLKVM 315


>gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469]
 gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469]
          Length = 272

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 72/182 (39%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H   +   +     P+    I  ++ +GL +S ++  +   +   V   F         G
Sbjct: 88  HAKHQSALEIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKHTEGVVSESFCIADMQIKCG 147

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             + E+I  +   +    V+  ++ + +  + G  L   L   + ++  ++  +  +   
Sbjct: 148 FPIEEAIEDLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAELVELQEKNQRLIATK 207

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + + + SA I+  LP  +  ++   SP +   L   P G +   +A     I ++++R +
Sbjct: 208 TAQVRLSARIVCLLPVVLLIILSLVSPDFQKGLF-TPSGVICTVIAMIMDCIALLIIRSI 266

Query: 183 IN 184
           + 
Sbjct: 267 MK 268


>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
           1622]
 gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
           xanthus DK 1622]
          Length = 296

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           +   +KKR        P +LD++  SV AGL  + A+A +V +    P+R E + V++  
Sbjct: 137 LNDQVKKRHLLISRALPYSLDLLTLSVEAGLDFTAALAKVVEKGKPGPLREELQLVLKQL 196

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G +  E +  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+ 
Sbjct: 197 KMGKTREEGLKSMIVRVDLPPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEK 256

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            A     K    +I  +   V  +++   P     +  +  G
Sbjct: 257 LAGEAPVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVAG 296


>gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
           2246]
          Length = 319

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 14/166 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + HL   R  +     P+ALD++V  V +GL +  A+  +  +       +  EF     
Sbjct: 157 LYHLRSTRQKEIFLTLPDALDLLVVCVESGLGLDAALRKVTDEMKGHAKTICEEFSLANL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E +  +     + +V   + ++    + G ++++AL   S  +R R+   A
Sbjct: 217 QLQMGRPRREVLHDLGVRTGVDDVRSLAAILIQADRFGSSIAQALRVQSDSMRVRRRQIA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A     +            +  LV F  P    VL+      +
Sbjct: 277 EEKAAKTAVQL-----------IFPLVLFIFPSIFVVLVGPAAIQI 311


>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
 gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
           transmembraneprotein [Moritella sp. PE36]
          Length = 325

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K + K+R A     FP+ALD+++    +GL + ++   +  +       +  E   V  
Sbjct: 163 LKKIAKRRMADLKRYFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCS 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+L +++        L+++   ++VI    +LG  ++  +   S   R+++   A
Sbjct: 223 KVRYGLTLQQALKEFSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           +  A    AK    +I  +  C+  S  +    P  + V+
Sbjct: 283 EENA----AKLGVKMIFPMMCCIWPSFFIVAIGPAVLKVM 318


>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
           13941]
          Length = 309

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L+  P+ALD++  +  AGL   +A+  I  + ++ +  EF RV+    
Sbjct: 151 LSRRIGQRQTELLNALPDALDLLAIATAAGLSFENAIQEITSKWTNELAREFSRVLRDMS 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ M     + +++ F + I     LG ++   L   +  +R R+  +A+ +
Sbjct: 211 MGVPRRQALTDMAERTGVPDIASFVSAIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQER 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           A     K            +  LV+   P    VL+      +L      
Sbjct: 271 ANQAPVKM-----------MFPLVFLIFPAIFAVLLGPAVPQLLEAFGGI 309


>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
 gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
          Length = 312

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 62/145 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKR  +   D P+ LD +  S++AG  +  A+  ++   S P++ EF   ++   
Sbjct: 148 VRSKAKKRQQQLRSDLPDFLDTVSVSLQAGSNMDSALKEVIKYFSGPIKEEFSIFLQEID 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   ++   ++     +E   F   +   ++LG  ++  L + +  +R     + K +
Sbjct: 208 LGVPREKAYGGLLERNDNEEFQSFIKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEK 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K +      +   +  L+ 
Sbjct: 268 AAKASPKVTMITSFIIAPLIMLLII 292


>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 296

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++   +G 
Sbjct: 141 VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 200

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+  A  
Sbjct: 201 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEKLAGE 260

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              K    +I  +   V  +++   P     +  +  G
Sbjct: 261 APVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVGG 296


>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
 gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
           3645]
          Length = 288

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   ++R  +  +  P+ +D++V  +  G+  ++A++ +  +   +   +  E   V  
Sbjct: 115 LRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAEAISHVHQELTSTHADLSYELGLVAR 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG+SL +S  RM     ++EV   ST +    + G  + EA+  LS +LR ++  +A
Sbjct: 175 DGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQRFGSAMGEAMHELSDMLRYQREQRA 234

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A     K    I   L    +  V    P  + +
Sbjct: 235 EERAQQASVKI--LIPTLLFIFPTIFVVLAGPAAIQI 269


>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
 gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum PSI07]
          Length = 313

 Score = 99.4 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +   IK R     + FP++LD+I+  V AGL +  A+  +V +       +  E+  +  
Sbjct: 149 LAWKIKYRQRDVFESFPDSLDLIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GLS  +++        + +VS    ++    + G +++ +L   S +LR ++ M A
Sbjct: 209 ELRAGLSREKALRHFAARTGVDDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    AK    I+  L FC+   +Y  
Sbjct: 269 EERA----AKIGTKILFPLIFCIFPSIYVV 294


>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
          Length = 306

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   +KR  +   + P+ +D++  +++AG+ +  A+   V  ++ P+  E  R+ +   
Sbjct: 143 VKFKAQKRQEEIQYELPDFMDMMSITLQAGMALDTALDYYVSTNNGPLSEEIARMNQEIS 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+    +   ++      E+      +     LG  +SE  A  +  +R+ +  KAK Q
Sbjct: 203 FGVQRETAYRALIDRTDSTELETLVQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQ 262

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           A   E K SA     +   +  LV+      +     D
Sbjct: 263 AGKSEPKISAVAGLVITPSIMLLVFGAF--ILKFFFTD 298


>gi|308234326|ref|ZP_07665063.1| Type II secretion system F domain protein [Atopobium vaginae DSM
           15829]
          Length = 314

 Score = 99.0 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + +      D P+   ++  ++ AG   S A+A +           F++       G
Sbjct: 128 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 187

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+SE ++ M   +    V F  T + +  + G  L       ++++  ++  K  +   
Sbjct: 188 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 247

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A+ S  ++ SLP  + +++   S  +   +   P G + LG+AA    I +M++R +
Sbjct: 248 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGI-TRPAGLISLGIAAFLDFIALMIIRSL 306

Query: 183 IN 184
           + 
Sbjct: 307 LK 308


>gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 295

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 6/151 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R      +  + LD +  +V AGL    A+A        P+  E  R ++   +G   
Sbjct: 143 QERQQAIALELADTLDQMTIAVEAGLGFEAAMARAGRNGRGPLAEELVRTLQDIAVGQPR 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+   +     + ++  F   +      G ++++ L   +  +R ++  +A+ +A+ + 
Sbjct: 203 REAYLALAERTAVPDLRRFIRAVVQADAYGVSIADVLRTQAAEMRLKRRQRAEEKAMQIP 262

Query: 126 AKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154
            K    +I  L  C+     +    P  +++
Sbjct: 263 VK----VIFPLILCILPTLFIVLLGPAVLDI 289


>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
 gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
          Length = 238

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGL 63
           +K+R        P  LD++  SV AGL  + A++ +V +  S P++ E   V++   +G 
Sbjct: 83  VKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVEKGKSGPLKEEMSIVLKQLKMGK 142

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  E++  M+  + L  ++ F T +    ++G +L + L   S  +R  +  +A+  A  
Sbjct: 143 TREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEKLAGE 202

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              K    +I  +   V  +++   P     +  +  G
Sbjct: 203 APVKMLFPLIACIFPTVFMVLF--GPIVFQFMFGNVGG 238


>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 324

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           ++ R     D  P+ALD++V  V AG+ +  A+  +  +   SS  +  E   ++     
Sbjct: 166 VRTRRRLMEDSLPDALDLLVVCVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELRA 225

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G + SES+  +   + L++V+   T+I      G +++  L   S  +R  +  +A+   
Sbjct: 226 GKTRSESLKNLAHRVGLEDVNSLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEE-- 283

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF--TSPGYMNVL 155
             + AK    ++  L FC+   ++     P  + ++
Sbjct: 284 --IAAKMPVKLLFPLVFCILPALFVAIMGPAGIRLM 317


>gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 284

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KRTA     +P+ +D +  ++RAGL + +A+  +  +  + +R  FR       
Sbjct: 93  VRWRARKRTATLRQLWPDVVDHLRSAIRAGLSLPEALIQLGEKGPEELRHVFRDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G     +++R+   +           + +  ++GG +L   L  L   LR+    ++++
Sbjct: 153 AGGQFDPALNRLKERLADPVADRIVEALRLTREVGGSDLGRLLGTLGEFLRESARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L        I   VM
Sbjct: 213 EARQSWTVNAARLAVAAPWIVMVLL-ATRPEAVAA-YNTATGAAVLLGGLVVSTICYSVM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 322

 Score = 99.0 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGL 63
           +R    +  FP+ALD+++  V AGL +  A+  +  +   S   V +   +V+     G 
Sbjct: 164 RRQEAIVHGFPDALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGR 223

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  +++ RM   + + E+  F+T++    QLG ++ + L   +  +R+++ M+A+ +A  
Sbjct: 224 SRQDALRRMADDVDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKAHR 283

Query: 124 MEAKASAWIIGSLPFCVSTLVYF 146
           +    S  ++  +   +  ++  
Sbjct: 284 LPVLLSVPLVACMLPVMIGVLML 306


>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
 gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
          Length = 318

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R    ++DFP+ALD++   + AGL +   +  +  +    S  V  E   ++ 
Sbjct: 153 LSRRIASRQRVIVEDFPDALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   ++  +      +++  FS ++    + G ++  +L  LS  LR ++ M+A
Sbjct: 213 EMRSGFSKETALRNLALRTGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
           + +A    AK +  ++  L FC+   +      P ++++   
Sbjct: 273 EERA----AKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRT 310


>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 303

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ +  +R  +  ++FP+A D+++  V AG+ +  A+  +  +    S+ +  E      
Sbjct: 137 LRWMAARRKREIFENFPDAADLMLVCVEAGMGLDAALGKVTAEIRIKSEALAQELHWTNL 196

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  +     + E+  F+ +++   + G ++ +++   S  LR ++ M+A
Sbjct: 197 EMRAGSTREKSLRNLAARTGVDEIHAFTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRA 256

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  A  +  K    ++  +   +  ++    P  + +L
Sbjct: 257 EELAAKIPTKMLLPLVTCIFPAI--VMVVLGPAIIRLL 292


>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
 gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
          Length = 298

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ L  +RT +     P  LDII  ++ AG  ++ A+   V +    P+  E RRV+   
Sbjct: 140 LRDLGARRTRQIAKALPFYLDIITLAIEAGSNMTGALQHAVDKGPTGPMSEELRRVLRDI 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  +   + +  +S +   I    + G +L   L   +   R+ + M+A+ 
Sbjct: 200 RAGRTRAESLRALAERLRIPAISNWVAAILTAEKQGSSLGPILRAQADQRRNERFMQAEA 259

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            AL    K    ++  +  C   +V+F
Sbjct: 260 MALKAPVKMLFPLMICIFPCTFIIVFF 286


>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 292

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR  +   + PN LD ++ SV AGL    A+A   G     +  E  R ++   +G    
Sbjct: 142 KRQQEIELELPNTLDQLLISVEAGLGFEAAMARAGGYGDGALSQELMRTLQDIQVGRPRQ 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   +     +Q++  F   +    + G  +++ L   ++  R ++  +A+ +A+ +  
Sbjct: 202 DAYQALADRSSVQDLRSFVRAVIQADKYGIGIAKVLRTQAKQARVKRRQRAEEKAMKLPV 261

Query: 127 KASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           K    ++  L  C+  +++     P  + ++
Sbjct: 262 K----VLFPLLLCIFPVLFIVLLGPAAIKIV 288


>gi|328943878|ref|ZP_08241343.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
 gi|327491847|gb|EGF23621.1| hypothetical protein HMPREF0091_10568 [Atopobium vaginae DSM 15829]
          Length = 296

 Score = 98.6 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 1/182 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L + +      D P+   ++  ++ AG   S A+A +           F++       G
Sbjct: 110 RLEQLQKTTLCHDMPDIFRMLGMALAAGQTFSQAIAYVGQHQPGEAGKAFQKASLKLRCG 169

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S+SE ++ M   +    V F  T + +  + G  L       ++++  ++  K  +   
Sbjct: 170 SSISEVLNDMAHTLQAPGVKFLITALFISQRTGAPLKSLFRQSAQLVEQQEKFKKLLSVK 229

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + +A+ S  ++ SLP  + +++   S  +   +   P G + LG+AA    I +M++R +
Sbjct: 230 TAQARLSIRVVSSLPLVLISVLSCISLDFQKGI-TRPAGLISLGIAAFLDFIALMIIRSL 288

Query: 183 IN 184
           + 
Sbjct: 289 LK 290


>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
 gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
           SB2B]
          Length = 287

 Score = 98.2 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 2/157 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  L + R  + +   P  LD +  ++ AGL +S A+A  V +  D P++ EF +VI   
Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVERGPDGPLKIEFEKVIRDM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S +++   M   + + E++   + ++   + G +L   L   +   R  +  +A+ 
Sbjct: 191 RAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRAEK 250

Query: 120 QALSMEAK-ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A+    K     I+   P     L++     ++  +
Sbjct: 251 KAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287


>gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 293

 Score = 98.2 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R      + P+ LD ++ +V AGL    A+A    +   P+ +E  R ++   
Sbjct: 137 LQSRGQERQKLIGLELPDTLDQMMIAVEAGLGFDSAMARAGDKGKGPLANELVRTLQDMQ 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+   +     + ++  F   +      G ++S+ L   +  +R ++  +A+ +
Sbjct: 197 IGRSRREAYEALGERTSVPDLDAFIRSVVQADIYGISISKVLRTQAGEIRLKRRQRAEEK 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           A+ +  K    +I  L  C+  +++     P  +NV+
Sbjct: 257 AMQIPVK----VIIPLMLCILPVLFIALLGPAVLNVI 289


>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 329

 Score = 98.2 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 14/165 (8%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQ 59
            L +KR        P+ALD++V  V AGL +  A+  +  +       +  EF       
Sbjct: 165 WLGRKRKESIFLGLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQL 224

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G   ++ +  +     + ++   S+++    + G ++++AL   S  +R R+   A+ 
Sbjct: 225 QMGRGRTQVLQELGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEE 284

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +A     K            +  LV F  PG   VL+      M+
Sbjct: 285 KAAKTAVKL-----------IFPLVLFIFPGIFVVLVGPAAITMV 318


>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 326

 Score = 98.2 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +     +R  + L+ FP+ LD+++  V AG+ +  A+  +  +       V  +  +   
Sbjct: 160 LTAKADRRRQEILNGFPDCLDLMLVCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +     + E+  F+T++    +LG +++  L   +  +R+++ M+A
Sbjct: 220 ELRAGASREEALRALADRSGVDEIRAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +A  +    S  ++  +   +  ++  
Sbjct: 280 EEKAHRLPVLLSIPLVACMLPVMIGVLML 308


>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 299

 Score = 97.8 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  +K R  +     P+A+D++V  V AGL +  A+  +  +   S   +  EF ++  
Sbjct: 136 LERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRVGQELAVSHPEINEEFLQINR 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            Q  G    ++         L E+  F +++    + G  ++ AL   S  +R ++   A
Sbjct: 196 EQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTPITRALNTFSDSMRLKRKQIA 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154
           + +A    AK +  ++  L   +     +    P ++ +
Sbjct: 256 EEKA----AKTTVKMLFPLVLFIFPCIFIVLLGPAFITI 290


>gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 306

 Score = 97.8 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  ++ R  +     P+ALD++V  V AGL +  A+  +  +   +   +  E R V  
Sbjct: 140 LRSRVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+    +  RM       E+   S  ++     G ++  AL   +  +R R+  +A
Sbjct: 200 EVKAGIPRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K S  ++  +  CV  +V 
Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVL 287


>gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 285

 Score = 97.8 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55
           K L KKR  +    F   L+ +  ++ +G+ ++D++  +             +  E   +
Sbjct: 95  KMLQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEM 154

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I      + + + I  +      +++  F+TV +V  + GGN+ + +   + I+ ++  +
Sbjct: 155 ISGMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEI 214

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             ++       K     +  +P  +  ++     G      + P G +    A    ++ 
Sbjct: 215 SGEIATAISSNKLQFNAMMVIPVFLILMLRAMG-GNFAKSFSTPLGVIATTFALGIFVLA 273

Query: 176 IMVMRLMINFD 186
            ++ + +++  
Sbjct: 274 FLLGQKIMDIK 284


>gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 312

 Score = 97.8 bits (243), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +LI KR        P+ LD++V  V AGL +   +  +  +   ++  +  E      
Sbjct: 150 LAYLISKRKQAIFLQLPDVLDLLVVCVEAGLGLDAGLRRVAEELKDTAPEICGELAMCNL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G +  + +  +     + +V     ++    + G ++++AL   S  +R ++   A
Sbjct: 210 QLQMGRNRRDMLHDLGVRTGVDDVKALVAIMIQADKFGSSIAQALRVQSDSMRVKRRQIA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           + +A     +            +  +V F  PG   VL+      M+
Sbjct: 270 EEKAQKTAVQM-----------LFPMVIFIFPGIFVVLVGPAAIKMM 305


>gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 296

 Score = 97.5 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 61/155 (39%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R A       + LD +  +V AGL    A+         P+  EF R ++   
Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +   +        +  F   +    + G  ++E L   +  +R ++   A+ +
Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+ +  K    ++  +   +  ++    P  +N++
Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVI--LGPAVINMM 290


>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 97.5 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M  L++ R  K  +D P+ALD++   V AGL +  A+  +  +    S  ++ EF  V+ 
Sbjct: 150 MTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLDAAMMRVTQEIGVKSHALKDEFDMVLL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  +     ++++   + ++    + G ++ ++L   +  LR ++ ++A
Sbjct: 210 ELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQADRFGTSVGDSLRVYTDNLRTKRRLRA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +  A  +  K            +  L++F  P  + VL+      ++
Sbjct: 270 EELAAEIALKL-----------LFPLMFFIFPTLLAVLVGPSAIQIV 305


>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
           [Shewanella sediminis HAW-EB3]
 gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
           transmembrane protein [Shewanella sediminis HAW-EB3]
          Length = 321

 Score = 97.5 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ +  +R       FP+ALD++V    AGL +  A+  +  +   S   + SE   V  
Sbjct: 159 LQKIASRRMRMLRTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCS 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL++  +++       L+++   ++ IS   +LG  ++E L   S   R+++  +A
Sbjct: 219 KVRAGLTVKVALNEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           + QA    AK +  +I  +  C+  S  +    P  + V+
Sbjct: 279 EEQA----AKLAVKMIFPMMLCIWPSFFIVAIGPAVLKVM 314


>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 320

 Score = 97.5 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   +++R  ++ + FP+ +D+++    AG+ +   +  +  + +     +    + V  
Sbjct: 163 LSQKVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A ++ AK S  ++  +   V  +
Sbjct: 283 EEKAHALPAKMSVPVVVCILPVVLMI 308


>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
 gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
          Length = 309

 Score = 97.5 bits (242), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L+  P+ALD++  +  AGL    A+  I  + ++ +  EF RV+    
Sbjct: 151 LSRRIRQRQTELLNALPDALDLLAIASAAGLSFESAMQEITSKWTNELAREFSRVLRDMS 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   ++++ M     + +++ F + +     LG ++   L   +  +R R+  +A+ +
Sbjct: 211 MGVPRRQALTDMAERTGVSDIASFVSAVKQAEALGISIGRVLTVQADEMRTRRRQRAQER 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           A     K            +  LV+   P    VL+      +L      
Sbjct: 271 ANQAPVKM-----------MFPLVFLIFPAIFAVLLGPAVPQLLEAFGGV 309


>gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 261

 Score = 97.1 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 84/191 (43%), Gaps = 7/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVI 56
           +++K R  +    F + +  +  S+ AG  + ++    + Q        D     F++++
Sbjct: 72  YIVKCREKQI-ASFKDGIRFVNNSMHAGYSIENSFKEALIQMEQVYGKDDDTYKGFKKIV 130

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               L + + ++  +       +E+  F+ ++    + GGN+S  + N + I+ ++ ++K
Sbjct: 131 GRIMLNIPIEQAFYQYAVESGTEEILDFAEILKFAKRSGGNMSHIINNTANIITEKISLK 190

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++  +    K    I+ ++P  +   +  +S G +  L  +  G +++ V     +I +
Sbjct: 191 QEISTVIAGKKFEQMILSAVPAGIILYMRVSSFGTIEKLYGNMFGIIVMSVCLFIYIISV 250

Query: 177 MVMRLMINFDV 187
           ++   + +  +
Sbjct: 251 IIASRISSIKI 261


>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
 gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
          Length = 333

 Score = 97.1 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+   KRT +     P+ALD++V    AGL V  A   +  +       +  EF     
Sbjct: 171 LKNKADKRTKEIQKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     + + +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLNERKMAFNNLAYRVDLEAVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A  + A  +   I+  LP     ++
Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318


>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 295

 Score = 97.1 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R        P+ LD++   V AGL    A+  +  + S P   E R  +    
Sbjct: 134 IRSAISRRKDDIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYSGPWADELRITLRQMD 193

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+S  E+  ++ +    ++VS F + +    +LG  + + L  ++  +R      A+ +
Sbjct: 194 MGVSRREAFDQLRKRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 253

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A     KA+  +   +      L+  
Sbjct: 254 AAKAVPKATLIVTSFMLPGTMILIAV 279


>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
 gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score = 97.1 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 8/191 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRVI 56
            L  +R    L  F + L+ +  S   G     A     G  +D          E   ++
Sbjct: 87  FLKARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYGDLADIYGKKADIVHEIEMIV 146

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
              + G ++   +        L +V  F+T+  V S+ GGNL +A+ +  RI+ ++  M+
Sbjct: 147 NGIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGGNLKKAVGDTYRIINEKIEME 206

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +++ L    K    I+  +P  +   +     G M+++ N P   +   +A A      
Sbjct: 207 MEIRTLLTANKNELNIMMLMPLIIMVTLSGM--GSMSIVQNTPLNVLTKVIALALFGTAY 264

Query: 177 MVMRLMINFDV 187
            + R +I+  +
Sbjct: 265 YIGRKIIDIKI 275


>gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 296

 Score = 97.1 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 61/155 (39%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R A       + LD +  +V AGL    A+         P+  EF R ++   
Sbjct: 138 LQSRGQERQAAIELALADTLDQMTIAVEAGLGFEAAMQRAAKNGKGPLAEEFIRTLQDIQ 197

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S   +   +        +  F   +    + G  ++E L   +  +R ++   A+ +
Sbjct: 198 MGQSRRIAYLDLAARTKAPNLRRFLRAVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEK 257

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+ +  K    ++  +   +  ++    P  +N++
Sbjct: 258 AMKVPVKVLFPLMTCILPTIFIVI--LGPAVINMM 290


>gi|303233387|ref|ZP_07320056.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480516|gb|EFL43607.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 317

 Score = 97.1 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 73/183 (39%), Gaps = 1/183 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            +++  +  K   + P+   I+   + +G  ++ A+A +           F++       
Sbjct: 127 NYIVHAKRDKVAHEMPDVFRILGMGLSSGQTLTQAIAYVGIHKKGEAGHAFQQASLQLRC 186

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +++ +  +   +    V F  T +++  + G  L       ++++  ++  K  ++ 
Sbjct: 187 GAGITDVLKGIAAMLHAPGVKFLVTALAISQRTGSPLRNLFRQSAKLVEQQEQFKRLLRV 246

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + + + S  ++ SLP  +  ++   S  +   L   P G   L  AA    + + ++  
Sbjct: 247 KTAQVRLSVRVVASLPVVLICILSVLSVDFQKGL-TRPLGVGCLICAAVLNAVALFIITQ 305

Query: 182 MIN 184
           ++ 
Sbjct: 306 LMK 308


>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
 gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
           DSM 15272]
          Length = 298

 Score = 97.1 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R A    + P+ALD IV S+ +GL    A+             E  R ++   
Sbjct: 140 LSSRARERQAAMELELPDALDKIVISLESGLGFESALMNAAETGKGDFADELVRTLQDIQ 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+    +   +V     +++  F   +    + G ++S  + N S  +R ++ ++A+ +
Sbjct: 200 VGMPRRAAYEALVNRTESEDIRRFVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGK 259

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT--SPGYM 152
           A     + S  ++  L FC+  +++    +PG M
Sbjct: 260 A----QQVSVKLLFPLIFCLFPVLFVIVLAPGVM 289


>gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 294

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R      +  N LD ++ SV AGL    A+A      + P+  E  R ++   +G S 
Sbjct: 141 QERQKTMQLELANTLDQMLISVEAGLGFEGAMARAGDNGNGPLAEELVRTLQDMQVGRSR 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES + +     + E+  F   +      G  +S  L   ++++R ++  +A+ +A+   
Sbjct: 201 RESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAKVMRVKRRQRAEEKAM--- 257

Query: 126 AKASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
            K    I+  L F +  +++     P  +N ++ 
Sbjct: 258 -KLPVMILFPLLFFIFPVLFIAILGPAVINTVVT 290


>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 285

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   KKRTA     +P+ +D +  ++RAGLP+ +A+  +  +  + +R  FR       
Sbjct: 94  LRWRAKKRTALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGDKGPEELRPVFREFGADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G     S+ ++   +           + +  ++GG +L + L  L+  LR+    ++++
Sbjct: 154 AGGQFDGSLDKLKNRLADPVADRIVEALRLTREVGGSDLGKLLGTLAEFLRENARTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P  +    N   G  +L       L     M
Sbjct: 214 EARQSWTVNAARLAVAAPWIVMLLL-ATRPEAVQA-YNTAIGAAVLLGGLVISLACYSTM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
           49989]
 gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
           49989]
          Length = 250

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 83/192 (43%), Gaps = 7/192 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA--VIVGQS----SDPVRSEFRRVI 56
           H++  R AK L  F + L  +  S      + +A+    IV +        +  E   + 
Sbjct: 59  HMLDVRQAKMLSQFQDLLHSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMH 118

Query: 57  ETQHLGLSLS-ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +      +  E      +   ++++  F+   S   + GGN+ +A+ +   ++ ++ ++
Sbjct: 119 RSIAENNVVDTEVWDDFAKRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISI 178

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             +++A++ + K    II  +P  V TL+   +  Y+  +     G +++GVA   +++ 
Sbjct: 179 SKEIKAITNQKKVEGRIILIMPIVVLTLLNLFAYDYIAPMYTSSSGRVMMGVALGLLIVA 238

Query: 176 IMVMRLMINFDV 187
           + ++  +    V
Sbjct: 239 VYMVEKITRIRV 250


>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 294

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R      +  N LD ++ SV AGL    A+A        P+  E  R ++   +G S 
Sbjct: 141 KERQKVIQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEELVRTLQDMQVGRSR 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+   +     + E+  F   I      G  +S  L   ++++R ++  +A+ +A+   
Sbjct: 201 REAYLALAERTSIPELRSFVQAIIQADTYGIAISRVLRVQAKVMRMKRRQRAEEKAM--- 257

Query: 126 AKASAWIIGSLPFCVSTLVYF 146
            K    I+  L F +  +++ 
Sbjct: 258 -KLPVMILFPLLFFIFPVLFI 277


>gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS]
 gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS]
          Length = 312

 Score = 96.7 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           M  + KKR  +  +  P+ ++++V    +G+ +  A+A I  +       +  EF     
Sbjct: 151 MDFITKKRVERMRNSLPDMIELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+  M     L E+    +++    + G +++E+L   S ++R ++  +A
Sbjct: 211 EMRAGATRIDSLRNMALRTSLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +     + AK    ++  L   +    L+    P  + ++
Sbjct: 271 EE----LAAKIPVKLVLPLGLFIFPTLLIVMLGPAILQLI 306


>gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 314

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I  R  +     P+ALD++V  V AGL +  A+  + G+ +     + SE R    
Sbjct: 148 LSSRIANRLRQIDRALPDALDLLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFL 207

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   +   R+       E+   +  ++     G +++ AL   +  +R R+  +A
Sbjct: 208 EVRAGIPRMDGFRRLAARTGSPELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRA 267

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +  +I  +   +  ++    P  +N++
Sbjct: 268 EERAAYVAVKMTLPLILCILPSLFAVI--IGPAAINIM 303


>gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 333

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +++R A F+   P+  D++V  + +GL +  ++  +  +       + +E  RV  
Sbjct: 158 LDRAVRRRQATFMKAIPDLFDLLVTCLSSGLTIEASIKRVAEELRLAHPDLANELARVQN 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             HLG+S+ +++        L  +   + +     Q G    EAL   + ++R ++  +A
Sbjct: 218 EIHLGISVVDALKHFAERCNLNPIRSLAMMCEQTRQYGTRAIEALRVHANMMRTQREQRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A     K  A  +  +   V  +V
Sbjct: 278 EERARKAAVKILAPTVLLIFPSVFVVV 304


>gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 306

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  ++ R  +     P+ALD++V  V AGL +  A+  +  +   +   +  E R V  
Sbjct: 140 LRARVQARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFL 199

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G++   +  RM       E+   S  ++     G ++  AL   +  +R R+  +A
Sbjct: 200 EVKAGIARISAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRA 259

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + +A  +  K S  ++  +  CV  +V 
Sbjct: 260 EEKAAYVSVKMSLPLVLCILPCVFAVVL 287


>gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 330

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+LI KR        P+ALD++V    AGL V  A   +  + S     +  EF     
Sbjct: 170 VKNLITKRQQAIRKALPDALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAI 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + + + L  +    T +    + G  L+ AL  LS   R  + M+A
Sbjct: 230 ELGFLTDRRQAFENLAQRVNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A  + A  +   I+  LP     ++
Sbjct: 290 EEKAARLPAIMTVPLIMFILPVLFIVIL 317


>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 296

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  I +R        P+ LD++   V AGL    A+  +  + + P   E R  +    
Sbjct: 135 LRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYAGPWSDELRITLRQMD 194

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G+   E+  ++ R    ++VS F + +    +LG  + + L  ++  +R      A+ +
Sbjct: 195 MGMGRREAFEQLRRRNESEQVSMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A     KA+  +   +      L+
Sbjct: 255 AAKAVPKATLIVTSFMLPGTMILI 278


>gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T]
 gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T]
          Length = 301

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   I+ R    L   P  LD+I   V AGL ++ A+     +    P+  E  RV+   
Sbjct: 144 LDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAAKGPAGPLGEELHRVLRDV 203

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S ++++      +    ++   + +     +G +L   L       R  +  +A+ 
Sbjct: 204 RAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPMLRAQGEQRRAERFARAEK 263

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +I  +  C   ++ F
Sbjct: 264 AAMEAPVKMLLPLIACIFPCTFIVLGF 290


>gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 310

 Score = 96.3 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + ++I KR        P+ALD++V  V +GL +   +  +  + SD    + +EF     
Sbjct: 149 LAYVISKRKQAIFLTMPDALDLLVVCVESGLGLDQGMNRVTAELSDTAPEICAEFSLCNF 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G +  E +  +     + ++   + ++    + G ++++AL   S  +R ++   A
Sbjct: 209 QLQMGRNRREVLHDLGVRTGVDDMKALAAILIQADRFGSSIAQALRVQSDSMRVKRMQIA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           + +A     +            +  LV F  PG   VL+      M+
Sbjct: 269 EEKAQKTAVQM-----------IFPLVLFIFPGIFVVLVGPAAISMM 304


>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 284

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  ++  T P  +  + N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVL-MLMATQPA-VRNIYNSFAGFVLMFAGAGLSVIAYRIM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 316

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++ + + R  +  +  P+ LD++V    +G+ +  A+A I  +    +  +  EF     
Sbjct: 152 LRFITQNRIERMRNSLPDMLDLMVVCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTL 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     L ++    +V+    + G +L ++L   S ++R  +  +A
Sbjct: 212 EMRAGANRIDALRNLALRSRLDDLQNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRA 271

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           +  A  +  K +   ++   P  +  L+
Sbjct: 272 EELAAKIPVKMTLPLVLFIFPVLMLVLL 299


>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 295

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +     P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  +
Sbjct: 141 RKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVSRRQ 200

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A     K
Sbjct: 201 AFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPK 260

Query: 128 ASAWIIGSLPFCVSTLV 144
           A+  I   +      L+
Sbjct: 261 ATMVITTLMVPATMILL 277


>gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
 gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
          Length = 289

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+A+D I  +VRAG+ + +AVA +  +  + +R  F+   +   +     + + R+   
Sbjct: 113 WPDAVDNITSAVRAGMSLPEAVAQLGLRGPEELRPAFQAFAQDYRITGRFHDCLDRLKER 172

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  ++GG +L   L  LS  LR+    +++++        +A +  
Sbjct: 173 LSDPVADRLIESLRIAREVGGSDLGRLLRTLSVFLREDSRTRSELETRQSWTVNAARLAV 232

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  ++  T P  +    +   G ++L   A    +   VM  +   
Sbjct: 233 AAPWIVLAMLS-TRPESVQA-YSTGTGALILFFGAVMTAVAYWVMVRIGRL 281


>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 314

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  I++R     + FP++LD+I+  V AGL +  AV  +V +       +  E+  +  
Sbjct: 149 LRLKIRRRQRDIFEAFPDSLDLIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTL 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL+  +++  +     +++VS    ++    + G +++E+L   S +LR +++M A
Sbjct: 209 ELRAGLAREKALRNLAARTGVEDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLA 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + +A    AK    I+  L FC+     V    P  + V+
Sbjct: 269 EERA----AKIGTKILFPLIFCIFPSLFVVLLGPAAIQVV 304


>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 301

 Score = 95.9 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 12/169 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR    L   P+ALD++  SV AGL    A+  +  +  + +  EFRR +    
Sbjct: 145 LGRQIKKRQKLILKALPDALDLLSISVTAGLGFDAALQRVAEKWDNELCREFRRALSDIR 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG    E+   M     +++++ F + +    QLG ++ + L   S  LR R+  +A+ +
Sbjct: 205 LGTQRHEAFRSMTVRTGVEDLTSFVSAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEE 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           A     K            +  LV+   P    V++  P    LLG   
Sbjct: 265 AQKAPIKM-----------LFPLVFLIFPSMFVVILG-PAIPRLLGGGL 301


>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
 gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
          Length = 284

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  K R  K    +P+A+D +  ++RAGL + +A+  +  +    +R  F R      
Sbjct: 93  VNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPYELREAFARFGSDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L   L  LS  LR+    +A++
Sbjct: 153 ATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLGRLLGTLSNFLRENARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +    P+ V  ++  T P  +  + N   G +L+   A   +I   +M
Sbjct: 213 QARQSWTVNAARLACVAPWVVL-MLMATQPA-VRNIYNSFAGFVLMFAGAGLSVIAYRIM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 310

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  +     P+ALD++  SV AGL    A+  +  QS+  +  EF  +++  H
Sbjct: 153 LNARIRQRKNQVEKALPDALDLLTVSVEAGLGFDCALMKVAEQSNSVLADEFVLMMQECH 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G    E++  M   + + ++S F   I +   LG ++   L   S+ +R ++  + +  
Sbjct: 213 MGKPRREALRDMADRVDVDDLSTFCGSIILADTLGISIGNILRTQSQQIRQKRRQRTEEL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+    K        L    +  V    P  + ++
Sbjct: 273 AMKAPIKM--LFPMVLFIFPAIFVILLGPAALQIM 305


>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
           solanacearum CMR15]
          Length = 315

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   IK R  +  + FP++LD+I+  V AGL +  A+  +V +       +  E+  +  
Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   +++  +     + +VS    ++    + G +++++L   S +LR +++M A
Sbjct: 211 ELRAGLPREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    AK    ++  L FC+   +Y  
Sbjct: 271 EERA----AKIGTKVLFPLIFCIFPSLYVV 296


>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
          Length = 320

 Score = 95.5 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   ++ R     ++FP+ LD++   V AGL +  A+  +  + +     +  E    + 
Sbjct: 153 LARKVEHRQRDVFEEFPDMLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLL 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ++++ +     +++V  F++++    + G +L+++L  LS +LR ++ M+A
Sbjct: 213 ELRSGFPKEKALTNLALRTGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRA 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + QA    AK +  ++  L F +    L+    P ++ + 
Sbjct: 273 EEQA----AKIALKLLFPLIFFIFPTLLLVLLGPAFIQIY 308


>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
 gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 311

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 59/151 (39%), Gaps = 3/151 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   + R  +   D P  LD +  +++AG+ +  A+  ++     P+R EF R  +   
Sbjct: 148 LKKKARDRQHQLRYDLPEFLDTVSVTLQAGVSLDQALREVIKFFDGPIREEFSRFNQELD 207

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG+   ++  +++R     E       +    +LG  ++      +  +R  +    K +
Sbjct: 208 LGVQREKAYEQLLRRNDNPEFQMLIKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEK 267

Query: 121 ALSMEAK---ASAWIIGSLPFCVSTLVYFTS 148
           A     K    + +I+      +   +   +
Sbjct: 268 AAKASPKVTLITTFIVTPTAIILIGGLMVLN 298


>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
 gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
          Length = 309

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IKKR        P+ALD++  SV AGL    A+  +  +  D +  EF++V+    
Sbjct: 152 LGQQIKKRKKSITKALPDALDLLCISVEAGLAFDLALQRVTQKWDDELSREFKKVLSDIR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  E++  +     + +V  F+  +    QLG ++S+ L   S  +R R+  +A+  
Sbjct: 212 LGRTRREALKDLGVRTGVDDVQTFTAAVIQADQLGVSMSKILRLQSDQMRQRRRQRAEEA 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           A     K            +  +V+   P    V++      ++
Sbjct: 272 AQQAPIKM-----------LFPMVFLIFPALFVVILGPAVPRIM 304


>gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 294

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R      +  N LD ++ SV AGL    A+A        P+  E  R ++   +G S  E
Sbjct: 143 RQKAMQLELANTLDQMLISVEAGLGFEGAMARAGENGKGPLAEEIIRTLQDMQVGRSRRE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S   +     + E+  F   I      G  +S  L   ++++R ++  +A+ +A+    K
Sbjct: 203 SYLALAERTNIPELRSFVQAIVQADTYGIAISRVLRIQAKVMRVKRRQRAEEKAM----K 258

Query: 128 ASAWIIGSLPFCVSTLVY--FTSPGYMNVLIN 157
               I+  L F +  +++     P  +N ++ 
Sbjct: 259 LPVMILFPLLFFIFPVLFIAILGPAVINTVVT 290


>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 303

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + H   +R  K     P+ LD+I   V AGL +  A+         ++DP+  E +    
Sbjct: 143 LYHQYNERQLKIFHTLPDILDLITVCVDAGLSMDAALIKTTETPQFANDPLAKEIKIATM 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    ES+  M     + +V  F T++S   + G +LS+AL+  +  LR ++   A
Sbjct: 203 ETRAGKPRIESLKDMAERTMVDDVRAFVTMLSQTERFGTSLSQALSVHAESLRTKRRQMA 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154
           +       AK +  ++  L   +    LV    P Y+ +
Sbjct: 263 EE----AAAKTTIKMVFPLILFIFPALLVVILGPAYVQI 297


>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 335

 Score = 95.1 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +++L+ KRT       P+ALD++V    AGL V  A + +  +       +  EF     
Sbjct: 171 IQNLVSKRTVAVRKGLPDALDLLVICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +   + L  V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLTERRHAFENLAYRVDLDSVKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A  + A  +   I+  LP     ++
Sbjct: 291 EEKAARLPAIMTIPLILFILPVLFIVIL 318


>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 304

 Score = 94.8 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +      R        P+ LD++   V AGL +  A+        +   P+ +EF  VI 
Sbjct: 144 LDRRAGVRKTAIFHALPDVLDLLTVCVEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVIL 203

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G   SE++  +     L ++    +++    +LG +L + L   S  LR ++   A
Sbjct: 204 EIRAGRPRSEALKGLAERTTLDDIKALVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLA 263

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           + +A    AK +  ++  L FCV    +V    P +  + 
Sbjct: 264 EERA----AKTAVKMLFPLTFCVFPAFMVVLLVPAFFRIF 299


>gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4]
          Length = 326

 Score = 94.8 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I+KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 165 LQNTIEKRQKAIGRAWPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     +  +      +    + G  +++AL  +S   RD++  +A
Sbjct: 225 ELSYLQDRRIAFENLGNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEA 284

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K +   I+  LP   + ++       M+V+
Sbjct: 285 EKKAASLPPKLTVPMIVFFLPVLFAVIMTPAILQIMDVM 323


>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
 gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 298

 Score = 94.8 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLS 64
           +R   F      A+ ++  S+R       A   +      S+ V  E+RR++E     + 
Sbjct: 112 RRKEDFEAGNVKAIRLMASSLRTSPSYLHAFEQVATSPFLSEIVLEEYRRIVELLRAQVP 171

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L   ++R        +V + +T++ +Q ++GG++++ L   +  +  R+    + +A   
Sbjct: 172 LEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAMA 231

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +  A   ++  +PF     +Y  +P + + L     G  L+  + A +LIG   +R
Sbjct: 232 QIVAQVNLLSVMPFVFVIALYVNNPNHFDPLTATIGGRFLILGSLASILIGGEAIR 287


>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
 gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
          Length = 331

 Score = 94.8 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+   KRT       P+ALD++V    AGL V  A   +  +       +  EF     
Sbjct: 171 LKNKAAKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 231 ELSFLTERKQAFDNLAYRVDLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 290

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A  + A  +   I+  LP     ++
Sbjct: 291 EEKAARLPAIMTVPLILFILPVLFIVIL 318


>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
           HTCC2654]
          Length = 329

 Score = 94.8 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +K  I+ R A+    FPNALD++  S  AG+    A+  +       S  +  EF     
Sbjct: 169 LKRKIRARQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++++ M   M + EVS F+ V+S   + G ++++AL   +  +R+ + MKA
Sbjct: 229 EILASRDRRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
             +A  +  + S  +   +   +  +
Sbjct: 289 IEKANRLPVQMSGVMSVMMLPALFLI 314


>gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
 gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
          Length = 300

 Score = 94.8 bits (235), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 65/155 (41%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R  +   +  + LD +  +V AGL    A+A      + P+  E  R ++   
Sbjct: 144 LQSRGQERNDEIALELADTLDQMTIAVEAGLGFDAAMARAGRNGTGPLAQELIRTLQEIQ 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G     +  ++     + ++  F   I      G ++++ L   +  +R ++  +A+ +
Sbjct: 204 VGQLRRTAYEQLALRTDVPDLRRFIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEK 263

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +  K    ++  +   +  ++    P  +N++
Sbjct: 264 AQQVPVKVIFPLLVCILPVLFIVL--LGPTVINMM 296


>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
           2246]
          Length = 307

 Score = 94.4 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +   I+KR     +  P+ALDI+V SV  G  ++ A+     +  D    + +E   V  
Sbjct: 147 LGARIEKRQRLIRNALPDALDIMVLSVEGGSSLNAALMWAADEIRDVHPVLGAELLVVQR 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LGLS+ ++     R   + E    +  +    + G ++ +AL   +   R  +   A
Sbjct: 207 EVQLGLSMGDAFQGFARRCGIPEGRDLAAALIQSEKYGASVGKALRTFADSARQDRQAWA 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +     +  KAS  ++  +  C+   ++  
Sbjct: 267 EE----VAQKASVKVVFPMLLCIFPAIFIV 292


>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
 gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
           ND132]
          Length = 318

 Score = 94.4 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R     D+ P+ALD++V  V +G+ +  AV  +  +       + SEF+ +  
Sbjct: 154 LSKKINRRKLAVGDELPDALDLLVVCVESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +   + L +++  ++++      G ++   L   S  +R +++ +A
Sbjct: 214 ELRAGKARIDALRSLAERVGLDDLNSLTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  M       ++  +   +   +    P  +  +
Sbjct: 274 EEKAAKMPVLLLLPLVAFILPTLFVAI--LGPAVIMSM 309


>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 339

 Score = 94.4 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 3/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
           +LI KRT       P+ALD++V    AGL +  A + +  +       +  EF       
Sbjct: 178 NLIGKRTNAIRKGLPDALDLLVICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAIEL 237

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +   +   + L+ +    T +    + G  L+ AL  LS   R+ + M+A+ 
Sbjct: 238 SFLTERRSAFENLAYRVNLESMRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEE 297

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           +A  + A  +  +I  +   +  ++ 
Sbjct: 298 KAARLPAIMTIPLILFILPTLFVVIL 323


>gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 339

 Score = 94.4 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 7/157 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +L +KR    +  FP+ALD+++  V AG+ +      +  +   +S  +  EF   + 
Sbjct: 162 ISNLAQKRQKSLMRAFPDALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVA 221

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +      + V      +    + G  L +AL  +++  R+ +  +A
Sbjct: 222 ELSYLPDRRLAYENLALRTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEA 281

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMN 153
           + +A S+ AK +   I+  LP     ++    P Y+ 
Sbjct: 282 EKKAASLPAKLTVPMILFFLPVLFLVVL---GPAYIQ 315


>gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 285

 Score = 94.4 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 3/178 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            A     +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E      S S  
Sbjct: 101 MADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQRGPAPLRGAFTRFGEEYRASGSFSSC 160

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           + ++   +           + +  ++GG +L   L  LS  LR+    +A+++       
Sbjct: 161 LDKLADELADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTV 220

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +A +  + P+ V  L+            + P G  +L    A  +   +VM+ +   
Sbjct: 221 NAARLALAAPWVVLLLLATRGQN--VSAYDSPTGVAVLVGGGAVSVFAYVVMKRIGRL 276


>gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 293

 Score = 94.4 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGL 63
           +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR       L  
Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  + +A  
Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVY 145
           +  K +   +  +   +  +V 
Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281


>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 295

 Score = 94.4 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 VRKRRDDIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYQGPWSDELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + + L  ++  +R      A+ +A   
Sbjct: 198 RRQAFDELRRRNDSEQVAMFVTALQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKA 257

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  +   +      L+
Sbjct: 258 VPKATLMVTTFMIPATMILM 277


>gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 286

 Score = 94.4 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 77/184 (41%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E     
Sbjct: 96  RRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPAPLRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  ++GG +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLGRLLRTLSAFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+   S G      + P G ++L   A   ++  ++M+ 
Sbjct: 216 RQAWTVNAARLAMAAPWIVLLLL--ASRGENIQAYDSPTGVLVLLGGAGVSVLAYVLMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 313

 Score = 94.4 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +K  I  R  + L   P  LDII   V AGL +  A+A  V +     VR EF+RV+   
Sbjct: 156 LKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVAKGPQGTVREEFQRVLRDV 215

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +ES+  M   +    V+ F   +    ++G NL   L   +   R  + ++A+ 
Sbjct: 216 RAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERFLRAEK 275

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +I  +  C   ++ F
Sbjct: 276 LAMEAPVKMLLPLIAFIFPCTFIVLLF 302


>gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein
           [Atopobium rimae ATCC 49626]
 gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein
           [Atopobium rimae ATCC 49626]
          Length = 311

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%)

Query: 8   RTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           R  K       P     +  ++ +G  +S A+  +   S   V   F R       G+ +
Sbjct: 131 RKLKLEVSHSMPGIYRTLSVALGSGQTLSQAIEYVGNHSHGAVAQYFIRASLKLRCGMPV 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
              +  +   + +   S  +T + +  + G  L       + ++  +   +  +   + +
Sbjct: 191 ESVVEELACDLSVPGSSLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQ 250

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + SA I+  LP  +  ++   SP +   L     G +   +A       ++++R ++ 
Sbjct: 251 VRLSARIVCLLPLLLIGVLSLISPDFQKGLTTT-TGIICTLLALGMDAGALVIIRKLMK 308


>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
 gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
          Length = 329

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + ++  KRT       P+ALD++V    AGL V  A   +  +       +  EF     
Sbjct: 169 LSNIASKRTDAIRKGLPDALDLLVICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAI 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A
Sbjct: 229 ELSFLNERKKAFDNLAYRVNLEAVKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A  + A  +   I+  LP     ++
Sbjct: 289 EEKAARLPAIMTVPLIMFILPVLFIVIL 316


>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +    +++  ++ + FP+ +D+++    AG+ +   +  +  + +     +    + V  
Sbjct: 163 LSQKTREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELARTYPALSQNLQLVSL 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 223 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 282

Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVY 145
           + +A ++ AK S  + +  LP  +   + 
Sbjct: 283 EEKAHALPAKMSIPVTVCILPVVLMIAII 311


>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
           protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
             + R  +    FP+ALD++V  V +GL +   +  +  +       +  E   V     
Sbjct: 163 RKQARQGRLRAAFPDALDLMVVCVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIR 222

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G++ +E++ ++     L+++    ++++   + G ++++ L   +   RDR+   A+  
Sbjct: 223 AGITSTEALKQLAVRTGLEDIQGLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAEEM 282

Query: 121 ALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
                AK    +I  L FC+  S  +    P  + V 
Sbjct: 283 G----AKIGTKLIFPLIFCLWPSFFLVAIGPAMIGVF 315


>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 312

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +   I  R  + L   P  LDI+   V AGL +  A++  V +      R E +RV+   
Sbjct: 155 LHDRIALRQREILKSLPFFLDIVTLCVEAGLNLQGALSQAVDKGPPGAFRDECQRVLRDV 214

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + +E++  M   +    ++ F T +     +G NL   L   +   R  +  +A+ 
Sbjct: 215 RAGKARAEALRAMAERLREPGITSFVTSVIQAESMGMNLGPVLRAQADQRRSERFQRAEK 274

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           +AL    K    +I  +  C   +++F
Sbjct: 275 KALEAPVKLLLPLIAFIFPCTFIVLFF 301


>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
 gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
          Length = 320

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I+KR+ K     P+ALD+ V    AGL +  A+A +  +   ++  +  E      
Sbjct: 160 LKNAIQKRSLKIQRALPDALDLFVICAEAGLSLDAALARVSREIGPAAPELADELGLTAV 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    E++  + R +   +V      +    + G  L++AL  L+   RD + MKA
Sbjct: 220 ELGFLPDRREALLNLTRRVAAPQVRGLVNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           + +A  + A  +  +I  +   +  ++    P  + VL   
Sbjct: 280 EEKAARLPATLTVPMIAFILPPLFVVL--IGPAIVQVLTTS 318


>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 315

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   IK R  +  + FP++LD+I+  V AGL +  A+  +V         +  E+  +  
Sbjct: 151 LSLKIKYRQREIFESFPDSLDLIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GLS  +++  +     + +VS    ++    + G +++++L   S +LR +++M A
Sbjct: 211 ELRAGLSREKALRNLAARTGVDDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    AK    ++  L FC+   +Y  
Sbjct: 271 EERA----AKIGTKVLFPLIFCIFPSLYVV 296


>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 295

 Score = 94.0 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           M+   KKR    L   P  LD+I    +AGL ++ A+A  V +     +  EF R++   
Sbjct: 138 MRDRRKKREKNILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGIEFDRMMREM 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S  ++++ M   +  + +    + ++    LG +L++ L+ +S   R  +   A+ 
Sbjct: 198 RTGVSRMDALNAMAERLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHAEK 257

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    ++  +      +++F
Sbjct: 258 LAMEAPVKMIGPLVIFIFPVTFIIIFF 284


>gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
           14600]
 gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
           14600]
          Length = 231

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 80/188 (42%), Gaps = 6/188 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K   ++R   FL +F + L ++V ++R G    +A  +   +         P+ +  +++
Sbjct: 38  KRREQRRYGIFLREFQDYLKLLVAALRNGYSAENAFRLAEEELGKITPADSPLLTAVQKL 97

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                L + L E +  M R +  +E    + +++   +LGG+ S  L   +R +  R  +
Sbjct: 98  SARIRLQMPLEEGLVEMARELGYEEAVNLADLMAFARRLGGDYSRFLERSARSIASRIEL 157

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K ++ A     +    ++  +P  V   V  T+  Y+  L   P G +++ +     L  
Sbjct: 158 KEEMAADLAAKEYEQRVMSVMPLAVLLYVRLTAGAYLEPLYRPPLGTIMMSLCLGLYLGM 217

Query: 176 IMVMRLMI 183
            ++   +I
Sbjct: 218 FLLGERII 225


>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
          Length = 311

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  ++K         P+ LD++V  + AGL + +++  +  +          E   V  
Sbjct: 150 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   A
Sbjct: 210 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNV 154
           +  A     K    I+ ++ F   +  +   SP    +
Sbjct: 270 EENAQKASVKI---ILPTMLFIFPAIFIVLVSPAAFKI 304


>gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
 gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
          Length = 293

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGL 63
           +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR       L  
Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  + +A  
Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVY 145
           +  K +   +  +   +  +V 
Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281


>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 320

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +  +KR    L  FP+ALD++V  V AG+ +  A++ +  +S   +  +  E      
Sbjct: 159 LTNKRQKRRQTILKGFPDALDLMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTL 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   +++  +     LQ++   +T++    + G ++S+AL   S  +R  +  +A
Sbjct: 219 ETRAGMPRKDALKNLAMRTDLQQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           + +A  +  K            +  L+ F  P     ++      +
Sbjct: 279 EEKAAKIPVKL-----------LFPLIMFIFPSLFVAILGPAVIRI 313


>gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
 gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas
           sp. S17]
          Length = 332

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+ I KRT       P+ALD++V    AGL V  A A +  +       +  EF+    
Sbjct: 167 LKNQIDKRTHAIRKGLPDALDLMVICAEAGLTVDAAFARVARELRRAYPELGDEFQLTSV 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    +++  +   + L  +    T +    + G  L+ +L  LS   R+ + M+A
Sbjct: 227 ELGFLTDRRQALENLSMRVNLDALRGVVTTMIQTEKYGTPLASSLRVLSAEFRNERMMRA 286

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           + +A  + A  +   I+  LP     ++        + L++   G 
Sbjct: 287 EEKAARLPAIMTVPLILFILPTLFIVILGPAGCSINDTLMSTMGGK 332


>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
 gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
          Length = 313

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  ++K         P+ LD++V  + AGL + +++  +  +          E   V  
Sbjct: 152 LKRAVRKYHQMLRAALPDFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQH 211

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG  + ++I R         +   S++I    + G N+SE+L+  + +LR ++   A
Sbjct: 212 DIDLGSPVDKAIRRFADRSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAA 271

Query: 118 KVQALSMEAKASAWIIGSLPFCV-STLVYFTSPGYMNV 154
           +  A     K    I+ ++ F   +  +   SP    +
Sbjct: 272 EENAQKASVKI---ILPTMLFIFPAIFIVLVSPAAFKI 306


>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 298

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    K R    + D P  LD IV +V AGL ++  +     +    P+  EFRR++   
Sbjct: 140 LTERRKHRQRLVIKDLPVFLDFIVMAVEAGLNITGGIEQATLKGPKGPLAQEFRRLLRDM 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL+ +E++ RM   M + ++S F+  +    ++G +L  +L   +   R+ + ++A+ 
Sbjct: 200 RSGLARAEALKRMAERMDMPQISSFTGTLIQADRVGASLGASLRVQADQRREERFLRAEK 259

Query: 120 QALSMEAKASAWIIG 134
            AL    K    ++ 
Sbjct: 260 LALEAPVKMMLPLVM 274


>gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
 gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus CMCP6]
          Length = 293

 Score = 93.6 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGL 63
           +   K     P+A+D++V  V +GL ++ A   +     +   P+  +FR       L  
Sbjct: 140 RYRKKLKQSAPDAIDLLVLCVESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLN 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             +++++ +     + E+   +T +++  + G  L++ L  +S   R ++ +  + +A  
Sbjct: 200 DRTQALNNLSWRTGIPELHTLATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVY 145
           +  K +   +  +   +  +V 
Sbjct: 260 LPGKITLIQMTMIMLPMLVMVI 281


>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
 gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   ++++  ++ + FP+ +D+++    AG+ +   +  +  + +     +    + V  
Sbjct: 147 LTQQVREKMREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSL 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G SL +++  +   + L EV  F+T++    +LG +LS AL   S  +R ++   A
Sbjct: 207 ELRAGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDEMRHKRMSLA 266

Query: 118 KVQALSMEAKASAWI-IGSLPFCVSTLVY 145
           + +A ++ AK S  + +  LP  +   + 
Sbjct: 267 EEKAHALPAKMSIPVTVCILPVVLMIAII 295


>gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 286

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAGL + +A+A +  +    +R  F R  E     
Sbjct: 96  RRRRGRMHDLREVWPDVVDNLASAVRAGLSLPEALAAVGVRGPVALRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  ++GG +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+   S G      + P G  +L   A   ++  ++M+ 
Sbjct: 216 RQTWTVNAARLAMAAPWIVLLLL--ASRGENVRAYDSPTGVAVLAGGAGVSVLAYLIMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 321

 Score = 93.2 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +      R  K  + FP+ALD++V    +G  +  A+  +  +   S   +  E   V +
Sbjct: 160 LDRFAASRMRKIRNGFPDALDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQ 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ LS ++        L ++   +  I+   +LG  ++E L   +   RD++   A
Sbjct: 220 KNRAGIELSTALHEFSERTGLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCV--STLVYFTSPGYMNVL 155
           +     M AK    II  +  C+  S  +    P  + V+
Sbjct: 280 EE----MAAKLGVKIIFPMLTCIWPSFFIVAVGPAVIKVM 315


>gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 284

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L  KR A   + +P  +D +   VRAGL + +A+A I  +  + +R  F++      
Sbjct: 93  VSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEALAAIGDRGPEQLRDPFKQFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                ++S+ R+   +           + V  ++GG +L   L+ LS  LRD    +A++
Sbjct: 153 TTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDLGRLLSTLSGFLRDDARTRAEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A    +  +A +  + P+ V  L+            + P G ++L   A    I   +M
Sbjct: 213 LARQSWSVNAARMAVAAPWLVLILLATQRETL--QAYDTPTGTVILIAGAVLSFIAYRLM 270

Query: 180 RLMINF 185
             +   
Sbjct: 271 IRIGRL 276


>gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 301

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L ++R  K  + F + + ++   ++     + A      ++  P++    RV+    
Sbjct: 115 LDYLGRRRVRKIEEQFKDFVKMLGAYLKMVPSFAGAFIKAAEEAESPLKEHTDRVVRKFE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  +  ++  + + +    +  ++  I    ++  +LS      ++ L +R  M  K+ 
Sbjct: 175 LGEDIETALQEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNKIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +  +   +SP ++    + P G +++  AA    I    V+
Sbjct: 234 AMTVQAKSLMVSLAGVMAVMIAVTMMSSPDFVKA-YSTPAGRIVIAYAALSYFISTFYVL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KKI 295


>gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
 gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa
           W1219]
          Length = 313

 Score = 92.8 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R        P  LD++   V AGL    A+  +  +    +  EF+ V     
Sbjct: 156 LASRVTRRQNLLEKQLPGFLDLLSVCVEAGLGFDQAIQYVCHEYKGELSDEFKVVQRDIS 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +  +++  + + +   +++ F+  +    ++G +L   L   SR +R     K + +
Sbjct: 216 LGSTRKQALMSLCQRVTSSQMTTFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEK 275

Query: 121 ALSMEAKASAWII 133
           A  +  K    ++
Sbjct: 276 AQKLSTKILIPML 288


>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 295

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 258 VPKATMMITTFMVPATMILL 277


>gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 326

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + + ++KR       FP+ALD+++  V++G+ V  A A +  + ++    +  E      
Sbjct: 167 ISNRVQKRQTSIKQAFPDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V   +T +    + G  + +AL  +++  R+ +  +A
Sbjct: 227 ELSYLQDRRQAYENLAKRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEA 286

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K +   I+  LP     ++     GYM +
Sbjct: 287 ERKASALPPKLTVPMIVFFLPVLFIVILGPAGIGYMQM 324


>gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 292

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++H  K    K  +  P  LD++   V+ G+ V  ++  +  + S     +      V E
Sbjct: 134 LEHRRKVLQDKISNQLPYLLDLMAMCVQTGMTVEASIQYLSSELSALDKDLGHTMNIVNE 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L + L +++  + +  P  EV  F   +    + G  +   L NL+  +R+ + +  
Sbjct: 194 RSRL-VGLDQALDELYQRFPATEVRSFVMTLKQSLRYGSAIYSVLNNLASDIREVRVLAL 252

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   +  ++   +PG M ++  
Sbjct: 253 EEKIGKLSAKMSVPLILFI--LIPIVILIAAPGIMRLMYG 290


>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
 gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
          Length = 347

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
           ++ +KRT       P+ALD++V    AGL V  A + +  +       +  EF       
Sbjct: 183 NMRQKRTDAIRKGLPDALDLLVICAEAGLTVDSAFSRVSKELGRAYPELGEEFALTSIEL 242

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  ++   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A+ 
Sbjct: 243 GFLTERRQAFENLAYRVNLESVKGVVTTMIQTEKYGTPLASALRVLSAEFRNERMMRAEE 302

Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144
           +A  + A  +   I+  LP     ++
Sbjct: 303 KAARLPAIMTVPLILFILPVLFIVIL 328


>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
 gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
           xenovorans LB400]
          Length = 293

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           + + ++R A+ L   P  LD +  +V AGL ++ A+   V +  + P+R E   V+    
Sbjct: 136 RDVRRRRVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRRELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLFFIFPITFIVLGF 281


>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 321

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ V  A   +  +    S  +  E      
Sbjct: 163 VKNRISKRQTAIRRAWPDALDLLLICVESGMGVESAFRKVADEIGPQSPELAEELSLTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V    T +    + G  + + L  L++  RD +  +A
Sbjct: 223 ELSYLPDRRKAYENLAERTGLDGVKGVVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEA 282

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + ++
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFAVII 310


>gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 304

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 63/150 (42%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++  + +R        PN LD++V  V +GL +      +  +       + +EF  +  
Sbjct: 139 VQFCVGRRRKAIERGLPNTLDLMVVCVESGLGIDQTTLQVAKELHWAHPEICAEFTVMNL 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+  +E++  +     + +V     V+    + G +++++L   +  LR     +A
Sbjct: 199 ELRAGIRRAEALHNLAERTGVDDVKKLVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +A    +K +  ++  + FCV   ++  
Sbjct: 259 EERA----SKLAVKLVFPIFFCVLPSLFVV 284


>gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis MSMB43]
          Length = 310

 Score = 92.5 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 64/143 (44%), Gaps = 3/143 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
           +I++R  +     P+ALD++V    AG  +  A+  +  +      P+  EF    +   
Sbjct: 153 MIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPLADEFAVTADELQ 212

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G  +S +++ + + + +       T +    Q G  ++++L  LSR  R  + +  + +
Sbjct: 213 IGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRTERSMQIVALEEK 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
           A  +  K S  ++  +   V+ +
Sbjct: 273 AAKLAPKMSLPMLLFIMPTVALI 295


>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 293

 Score = 92.5 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           ++ + K+   +     P  LD +  SV AGL ++ A+   V +  + P+R EF  V+   
Sbjct: 135 LRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNINGALLQAVEKGPEGPLRREFEHVLRDL 194

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GLS ++++ RM   + ++EV+ F   +    ++G  L+  L   S   R  +  +A+ 
Sbjct: 195 KSGLSRADALRRMDDRLRVKEVTNFVGAVIQAERMGSGLAATLRFQSEQRRTERFQRAEK 254

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           QA+    K    ++  +      ++ F
Sbjct: 255 QAMEAPVKLIFPLVVFIFPVTFIVLGF 281


>gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
 gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
          Length = 285

 Score = 92.5 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F++      
Sbjct: 94  LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQQFARDYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G    +++ R+   M           + +  ++GG ++   L  LS  LR    ++A++
Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +    P+ V  L+  T P  +    +   G +LL    A ++    VM
Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLG-TQPAAVAAYRSAAGGAVLLAGMVASVVC-YRVM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1]
 gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
          Length = 325

 Score = 92.1 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P+ALD+++  V +G+ +  A   +  +    S P+  E      
Sbjct: 166 IQNRITKRQQSIRRAWPDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++     +   +  V   +  +    + G  +  AL  ++   R+++  +A
Sbjct: 226 ELSFLQERRQAYLNFAKRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A S+  K +  +I      +  ++    P  M ++  
Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFFVI--MGPAVMQIIAT 323


>gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
 gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus
           trichosporium OB3b]
          Length = 329

 Score = 92.1 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +GL +  A   +  +    S P+  EF     
Sbjct: 170 LTNAITKRQQSMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V    TV+    + G  L  AL   ++  RD +  +A
Sbjct: 230 ELSYLPDRRQAFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEA 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + QA ++  K +  +I    F    +V   +P  + V+
Sbjct: 290 ERQAAALPPKLTVPMIVF--FLPVLMVVVMAPAIIQVM 325


>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
 gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
          Length = 319

 Score = 92.1 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +   I +R    L +FP  LD++V  +RAGL  + A+   +       +R EF +V+   
Sbjct: 152 LSDQINRRRRITLKEFPFMLDLLVLGMRAGLNYAAALGHAIEAMPNGVIRDEFSKVLREI 211

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S  E++  +   M L+ +S F   ++   + GG +   L   +   R+ +   A++
Sbjct: 212 RAGKSRREALLTLADRMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEI 271

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147
            A     +    ++  L   +  L+ F 
Sbjct: 272 AANKAPIRMLIPMMLFLFPIIFMLLTFI 299


>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 296

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    K R    + D P  LD I  SV AGL V+  +   V +     +  EF R++   
Sbjct: 138 LGERRKLRHKAVVRDLPVYLDFITMSVEAGLNVTGGIEQAVAKGPAGALSQEFSRMLRDI 197

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL  +E++ RM   M + +++ F++ +    ++G NLS+ L   +   R+ + ++A+ 
Sbjct: 198 RAGLPRAEALKRMSERMDISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEK 257

Query: 120 QALSMEAKASAWIIG 134
            AL    K    ++ 
Sbjct: 258 LALEAPVKMMLPLVM 272


>gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia
           thailandensis MSMB43]
          Length = 244

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  +S A+  +  +      P+  EF     
Sbjct: 84  LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAIRRVASELKTICPPLADEFSVCAN 143

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 144 ELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 203

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 204 EEKAAKLAPKMTLPMMLFVMPTVALI 229


>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 293

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R A+ L      LD +  +V AGL ++ A+   V +    P+R E   V+    
Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPLRWELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ +
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKK 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281


>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 292

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 61/140 (43%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  K   + PN LD ++ +V AGL    A+A        P+  E  R ++   +G S 
Sbjct: 141 QERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKGPLAEELIRTLQDMQVGRSR 200

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S   +     +Q++  F   +      G  +++ L   ++ +R ++  +A+ +A+ + 
Sbjct: 201 RDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRAEQKAMKLP 260

Query: 126 AKASAWIIGSLPFCVSTLVY 145
                 ++  +   +  ++ 
Sbjct: 261 VLVLFPLLLFIFPVIFIVIL 280


>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
 gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
          Length = 324

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I+KR       FP+ALD+++  + +G+ +  A   +  +      P+  EF     
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKQAYENLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814]
 gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814]
          Length = 333

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + +   KR A  +  FP++LD+++  V +G+ +  A A +  +   +S  +  E      
Sbjct: 159 LTNRADKRKASIMKAFPDSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +        +   +T +    + G  +  AL  +++  R+ + ++A
Sbjct: 219 ELSYLQERRQAYVNLADRTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++ AK +  +I      +  ++   +P Y+ +
Sbjct: 279 EKKAAALPAKLTVPMIVFFLPVLFIVI--GTPAYIQI 313


>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 295

 Score = 91.7 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 138 IRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSSKYEGPWADELRITLRQMDLGMS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 258 VPKATMMITTFMVPATMILL 277


>gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 285

 Score = 91.7 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+    + +P+A+D    ++RAGL + +A+  +     + +R  F+       
Sbjct: 94  LSWQARRRSTALRELWPDAIDHARSAIRAGLTLPEALIQLGETGPEGLREPFQHFARDYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G    +++ R+   M           + +  ++GG ++   L  LS  LR    ++A++
Sbjct: 154 AGARFVDALDRLKARMADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +    P+ V  L+  T P  +    +   G +LL    A ++    VM
Sbjct: 214 EARQSWTVNAARLAVCAPWLVLLLLG-TQPAAVAAYRSAAGGAVLLAGMVASVVC-YRVM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRI 274


>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 292

 Score = 91.7 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           M+ + ++  A  L   P  LD +  +V AGL V+ A+   V +  D P+R EF  V+   
Sbjct: 134 MRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKAVEKGPDGPLRREFEHVLRDL 193

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             GL   +++ R      + EVS     I+   ++G  L++ L   S   R  +  +A+ 
Sbjct: 194 KSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSGLAKTLRFQSEQRRAERFQRAEK 253

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           QA+    K    ++  +      ++ F  P  M  +
Sbjct: 254 QAMEAPVKLLFPLLVFIFPVTFIVLGF--PIAMKFM 287


>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 295

 Score = 91.7 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAAKA 257

Query: 125 EAKASAWI 132
             KA+  +
Sbjct: 258 VPKATFAV 265


>gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 322

 Score = 91.7 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59
           ++I +R       FP+ALD+++  V +G+ +  A   +  +       +  E        
Sbjct: 166 NVISRRQDSIRKAFPDALDLMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTAEL 225

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +   + R   L  V   +T +    + G  L +AL  +++  RD +  +A+ 
Sbjct: 226 SYLQERRMAYENLARRTGLPGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEAEK 285

Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144
           +A  +  K +   I+  LP     ++
Sbjct: 286 KAAGLPPKLTVPMILFFLPVLFGVIL 311


>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
 gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 285

 Score = 91.3 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +RTA   + +P+ +D +  ++RAG+ + +A+  +  +  +P+R  F R      
Sbjct: 94  VRRRAHRRTAVLREVWPDVVDHLRSAIRAGMGLPEALMQLQYRGPEPLRPAFARFAADYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
               L  S++ + + +           + V  ++GG +L + L  LS  LR+ +  ++++
Sbjct: 154 ASGQLHGSLTMLKQRLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ +  L+  T P  +    N P G ++L    A  +    +M
Sbjct: 214 EARQSWTVNAARLSVAAPWLILGLM-ATQPAAVQA-YNTPAGAVVLLGGLAVSVAAYQLM 271

Query: 180 RLM 182
             +
Sbjct: 272 LRL 274


>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 295

 Score = 91.3 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 VRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              +   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 198 RRHAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 257

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 258 VPKATMVITTFMVPGTMVLL 277


>gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 461

 Score = 91.3 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++    KR  +     P+ +D++   V  G+ +  A+A +  + SD    +  E R V E
Sbjct: 284 VRQRAAKRRREIEQALPDVIDLLNMCVSQGMTLRPALARVSWEISDTYPAMAEELRIVAE 343

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             +LG +L  +++ M   + + E+   +T++    ++G N+S++L   S  +R     +A
Sbjct: 344 QANLG-TLEHALNNMNERVDVPELHSLTTLLIQTERMGTNVSDSLTEYSDGMRATLQQRA 402

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +A +   K     +  L   V   + 
Sbjct: 403 DQKANAATFKLLFPTVLCLMPAVYFFLL 430


>gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 330

 Score = 91.3 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           I+KR+A      P+ALD++V    AGL V  A + +  +       +  EF         
Sbjct: 176 IQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAIELSF 235

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +   +   + L  +    T +    + G  L+ AL  LS   R  + M+A+ +A
Sbjct: 236 LTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 295

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
             + A  +  +I  +   +  ++ 
Sbjct: 296 ARLPAIMTVPLILFILPTLFVVIL 319


>gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 319

 Score = 91.3 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I  R        P+ALD++V  V AGL +  +V  +  +       + +E R    
Sbjct: 154 LTSRISSRQLTLERGLPDALDLLVTCVEAGLGLDASVQRVSEEIHRAWPQLATELRTTFL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+   E+  R+     ++++   S  ++     G +++ AL   S  +R R+  +A
Sbjct: 214 EVKAGIPRIEAFRRLATRTGVKDLKSLSATLAQTEIFGTSVALALRVQSDGMRVRRMHRA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +  +I  +   +  ++    P  + ++
Sbjct: 274 EEKAAYVSVKMTLPLILCILPSLLAVI--MGPAIIGIM 309


>gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 266

 Score = 90.9 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 72/191 (37%), Gaps = 8/191 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRRV 55
            H  +KR+ +    F + L+ +  S+ AG+ V D++                +  E   +
Sbjct: 77  NHQNEKRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNI 136

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +   +  +++   +         +++  F+       + GGN+ E + N   IL D+  +
Sbjct: 137 LIGFNNNINIETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITI 196

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +V+ +   ++    I+  +P   S ++                G +  G A    +I 
Sbjct: 197 EMEVKTMIAASRNELNIMMCMPVLFSLVLNVMGGDITGH--ATLIGRIATGAAVMMFIIA 254

Query: 176 IMVMRLMINFD 186
            MV + ++   
Sbjct: 255 YMVGKKLMTIK 265


>gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score = 90.9 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++    +R  +     P+ALD++V  V AG+ +  A   +  +    + P+  E + +  
Sbjct: 159 LRLKTSRRRKQLRRGLPDALDLMVVCVEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNL 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     L++V+  +T++    + G ++++AL   S   R +++  A
Sbjct: 219 ELRAGKARRDALRNLALRTDLEDVNSLTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMA 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           +  A  +  K            V  L+ F  P    V++       
Sbjct: 279 EELAAKLPVKL-----------VLPLILFIFPSLFVVIMGPAMIRA 313


>gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
 gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
          Length = 258

 Score = 90.9 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 70/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +            SE R +   
Sbjct: 68  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQ 127

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 128 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 187

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 188 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 247

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 248 AKKFLQVGI 256


>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 300

 Score = 90.9 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 61/140 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R A      P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 143 VRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  ++E L  ++  +R     +A+ +A   
Sbjct: 203 RRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKT 262

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  +      L+
Sbjct: 263 IPKATMATLVFMLPATMILI 282


>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 293

 Score = 90.9 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           + + ++R  + L   P  LD +  +V AGL ++ A+   V +  + P+R E   V+    
Sbjct: 136 RDVRRRRVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVEKGPEGPLRRELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+     +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLMFIFPITFIVLGF 281


>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
 gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
           15444]
          Length = 310

 Score = 90.9 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I +R       FP+ +D++V  V AGL +  +V  +  +       +    R +  
Sbjct: 151 LDMRISQRKQACSSGFPDMMDLMVACVEAGLSLDASVQRVGEELELRHPIIAGHMRTLSL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S   +       + + E    +T++    ++G +L + L   S  +R R+ + A
Sbjct: 211 ELRAGKSRKMAWRAFAERLGIDEAGSLATMLRQAEEMGTSLGQTLRVFSADMRQRRILMA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A+++ AK +  +I  +   +  ++    P  + ++  
Sbjct: 271 EEKAMALPAKMTLPLIIFVFPVLLGVLIL--PAVVMLMTT 308


>gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
 gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
          Length = 291

 Score = 90.9 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 3/174 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
              +P  +D +V  VRAG  +   +  +  +   PVR  F               ++  M
Sbjct: 110 RAAWPEVIDAMVSGVRAGTALPQVLCDLADEGPVPVRFAFEAFSRDYSANGRFELALDTM 169

Query: 73  VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +           + +   +GG +L+  L +L+ +LR+   ++ +++A       +A 
Sbjct: 170 KETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  + P+ V  L+     G    + N P G  +L   A   +I  ++M+ M   
Sbjct: 230 LGLAAPWVVLLLLS--GGGASAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281


>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 297

 Score = 90.5 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 140 VRERRHAIERTLPDFLDVLAVVVSAGLSFRQALDRVAEKYEGPWADELRITLRQMDMGVS 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 259

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             KA+  +   +      L+ 
Sbjct: 260 VPKATMVVTTFMVPGTMILLI 280


>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
 gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
          Length = 318

 Score = 90.5 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++  I+ R    L  FP+ALD++V  V AGL +  A+  +  +       +  E R +  
Sbjct: 154 LQRRIESRQRNILAAFPDALDLMVVCVEAGLSLDVAITRVGQELQLMHRELSEELRALYL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++      + L+EV  F  ++    + G ++ +AL   +  LR R++++A
Sbjct: 214 ELRTGRSRQQALRNAGLRIQLEEVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              A  +  K    +I  +    S LV    P  + V+
Sbjct: 274 TEMAAKLPVKLLLPLIFFI--FPSLLVVLLGPAAIQVI 309


>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
 gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
          Length = 295

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVAARYEGPWADELRITLRQMDLGMS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 258 VPKATMMITTFMVPATMILL 277


>gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
 gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 296

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 3/141 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64
           R  K     P+ LD+    + AGL   +A+  +  +       +  EF  +IE   +G+ 
Sbjct: 145 RLNKVNIALPDFLDMANICMSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVP 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++ +     P +++     ++    +LG  +S AL   SR +  ++    + +A   
Sbjct: 205 RQEALKQFALRNPSKDIQDLVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKT 264

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
            AK +  I+  L      L+ 
Sbjct: 265 SAKMAIVILPFLMLPYFMLML 285


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 49/102 (48%)

Query: 46  DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
            P++    R+     LG+SL ++           E   F+  + V  + GGN SE + NL
Sbjct: 1   QPLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENL 60

Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
            +++RDR+    +++A++ E + +A ++  LP  ++      
Sbjct: 61  IKLIRDREQAGRQLRAMTGETRMTALVLALLPVGMAGYFLTV 102


>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 138 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASRYEGPWADELRITLRQMDLGMS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 198 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 257

Query: 125 EAKASAWIIGSLPFCVS 141
             KA+  I   +     
Sbjct: 258 VPKATMMITTFMVPATM 274


>gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 290

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++RT    + +P A+D I  ++RAGL + +A+  +     + +R  F        
Sbjct: 99  LRSAARRRTTAMREVWPEAVDHINSAIRAGLSLPEALVQLSRNGPEELRPAFAEYALDYQ 158

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                +  + R+   +           + +   +GG +L   L  LS  LR+    +A++
Sbjct: 159 ASGDFASCLDRLKIRLADPVGDRIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAEL 218

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P       +   G +L+ V A   LI   VM
Sbjct: 219 EARQSWTVNAARLALAAPWIVLALM-ATRPQAAQA-YDTATGMVLIVVGAVASLIAYRVM 276

Query: 180 RLMINF 185
            L+   
Sbjct: 277 LLIARL 282


>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
 gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
          Length = 323

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + + I  R       FP+ALD+++  V +G+ +  A   +  +      P+  EF     
Sbjct: 164 ISNTITNRQTSMRRAFPDALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   STV+    + G  L +AL   ++  RD + M+A
Sbjct: 224 ELSYLPDRRTAYLNLAARTGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I    F    +V   SP  + V+
Sbjct: 284 EKKAAALPPKLTVPMIVF--FLPVLMVVVLSPAAIQVM 319


>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 296

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 58/137 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 139 IRVRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVASKYEGPWADELRITLRQMDLGMS 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 199 RRQAFAELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 258

Query: 125 EAKASAWIIGSLPFCVS 141
             KA+  I   +     
Sbjct: 259 VPKATMMITTFMVPATM 275


>gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
           17982]
          Length = 292

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 3/174 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
              +P  +D +V  VRAG  +   +  +  +   PVR  F               ++  M
Sbjct: 110 RAAWPEVIDAMVSGVRAGTALPQVLCDLAEEGPVPVRFAFEAFSRDYSANGRFELALDTM 169

Query: 73  VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +           + +   +GG +L+  L +L+ +LR+   ++ +++A       +A 
Sbjct: 170 KETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  + P+ V  L+     G    + N P G  +L   A   +I  ++M+ M   
Sbjct: 230 LGLAAPWVVLLLLS--GGGANAHVWNSPGGVAVLCSGAGICVIAYLIMKAMGRL 281


>gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 292

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 3/174 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
              +P  +D +V  VRAG  +   +  +  +   P+R  F             + ++ RM
Sbjct: 110 RAAWPEVVDAMVSGVRAGTSLPQVLCELADEGPQPLRFAFDAFSRDYSANGRFASALDRM 169

Query: 73  VRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +           + +   +GG +L+  L +L+ +LR+   ++ +++A       +A 
Sbjct: 170 KDEVRDPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAAR 229

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +  + P+ V  L+     G    + N P G  +L   A   ++  + M+ +   
Sbjct: 230 LGLAAPWVVLLLLSGG--GGSAAVWNSPGGIAVLCAGAGMCVVAYLAMKALGRL 281


>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
 gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
 gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 300

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 143 VRERRDVIDRTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWADELRITLRQMDMGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  ++E L  ++  +R     +A+ +A   
Sbjct: 203 RRQAFDELRRRNNSEQVAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKT 262

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  +      L+
Sbjct: 263 IPKATMVTLVFMLPATMILI 282


>gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 426

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 67/157 (42%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +++  + R  +     P+ LD++   V  G+ V  ++  I  +       +  E + + E
Sbjct: 234 VRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKIINE 293

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G S+  ++    + + + EV  F++++   S++G ++S AL   +  +R+    +A
Sbjct: 294 QSRIG-SMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLKQRA 352

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +      +     +  L   V   ++   P  + +
Sbjct: 353 EEKGNRATFRLLFPTVLCLMPAV--YLFLMGPAIIEL 387


>gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 285

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ L  KR A   + +P  +D +  +VRAGL + +A++ +  +  + +R  F R      
Sbjct: 94  VRRLAVKRRADLREVWPEVVDNLASAVRAGLSLPEALSALSTRGPEVLRPPFARFAAEYR 153

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                   + R+   +           + V  ++GG +L   L  LS  LR+    +A++
Sbjct: 154 SSGRFGNGLDRLKDDLADPVGDRIVETLRVAREVGGSDLGRVLRTLSSFLREDARARAEL 213

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +        +A +  + P+ V  L+   S        + P G  +L   AA  L    +M
Sbjct: 214 ETRQGWVVQAARLAVAAPWVVLLLLATQSATL--EAYDSPLGTAILLGGAAVCLASYRLM 271

Query: 180 RLMINF 185
             +   
Sbjct: 272 LRIGRL 277


>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 300

 Score = 90.1 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 60/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+S
Sbjct: 143 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 203 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 262

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 263 VPKATLMITTFMVPATMILL 282


>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
 gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
          Length = 325

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  V +G+ +  A   +  +      P+  E      
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L + L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKMAYENLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A S+  K +   I+  LP     ++
Sbjct: 286 EKKAASLPPKLTVPMIVFFLPVLFVVIL 313


>gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 330

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           ++KR+A      P+ALD++V    AGL V  A + +  +       +  EF         
Sbjct: 176 VQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVARELGKAYPELGDEFHLTAIELSF 235

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +   +   + L  V    T +    + G  L+ AL  LS   R  + M+A+ +A
Sbjct: 236 LTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 295

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
             + A  +  +I  +   +  ++ 
Sbjct: 296 ARLPAIMTVPLILFILPTLFVVIL 319


>gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629]
          Length = 247

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 70/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +            SE + +   
Sbjct: 57  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 237 AKKFLQVGI 245


>gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 303

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58
           +    + +   +   FP+ LD++V  V AGL +  A   +  +  +   +R     +   
Sbjct: 143 VSRRQRLQKEAYRSAFPDMLDLLVVCVDAGLSLEAAFDRVGSEMDESGALRVNLAIMASE 202

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G    + +  +   + + E   F+ ++    +LG ++S++L   S  +R+++ M+A+
Sbjct: 203 LRNGRGFVDGLQGLAERLDIDEARSFAILLQQSLELGTDISQSLRVYSDEMRNKRMMRAE 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147
            +A ++  K     +G+  F V  +V   
Sbjct: 263 EKANALPVKIVLP-LGAFIFPVILIVVMV 290


>gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 294

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 60/147 (40%), Gaps = 4/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  +   +  + +D++   + AGL +S ++  +       +  EF+       
Sbjct: 137 INMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGILAEEFQYAFVEIE 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG   SE++  M + + +++V+     I    + G  +++ L + +     R     +  
Sbjct: 197 LGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQAN----RIKQDFRTN 252

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147
           AL M   AS  ++  +   +   ++  
Sbjct: 253 ALKMAQAASIKMLAPMILFILPALFIV 279


>gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 325

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +  +    +  EF     
Sbjct: 166 LKNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKIAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 301

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++L ++R  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 115 LEYLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVVRKFE 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++  + + +    +  ++  I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 175 LGEDLEEALKEL-KNVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           +++++AK+    +  +   +      +SP ++    + P G +++  A     I    V+
Sbjct: 234 SMTVQAKSLMVSLAGVMIVMMAATVMSSPDFLRT-YSTPVGKVVIAYAVLSYFISTFYVL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KKI 295


>gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
 gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
          Length = 325

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  V +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  L + L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKTAYENLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPILFVVIL 313


>gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 316

 Score = 89.8 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  LI +R        P+ALD++V    AG  +   V  +  +      P+  EF    +
Sbjct: 157 LNALISRRQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGD 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +   + L  V    T +    Q G  ++ +L  LSR  R  + M  
Sbjct: 217 ELQVSGDSAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMAL 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V  +
Sbjct: 277 EEKAAKLATKMTMPMMLFILPTVGLI 302


>gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1]
          Length = 247

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 70/189 (37%), Gaps = 6/189 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR------SEFRRVIET 58
           ++++  K  ++F N L ++  ++ AG  V +A      +            SE + +   
Sbjct: 57  VRRQKEKLNEEFMNVLKVLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQ 116

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +  +    +S       L+++  FS + S   + GG   + + + +  +  + +   +
Sbjct: 117 IKMNQTFEAVLSEFAHRSGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQ 176

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +     +  +P  +   +  +S  YM+ L  +  G + +          I +
Sbjct: 177 IEVAVSAKRLEQKTMNYIPIFLLAFLKLSSRDYMSALYGNLIGVIFMSTCLLAYAGAIKL 236

Query: 179 MRLMINFDV 187
            +  +   +
Sbjct: 237 AKKFLQVGI 245


>gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
 gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
          Length = 315

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 124 VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L + L  LS  LRD    ++++
Sbjct: 184 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRDNARTRSEL 243

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+  T P    ++ N   G ML+   AA  L    +M
Sbjct: 244 LARQSWTVNAARLSCVAPWFVLCLM-ATQPAA-RMVYNSFAGAMLMIAGAAISLAAYRLM 301

Query: 180 RLM 182
             +
Sbjct: 302 LRI 304


>gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 328

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + ++ +KR    +  FP+ALD+++  V +G+ +  A+A +  +       +  E   +  
Sbjct: 163 ISNIAQKRRESIVAAFPDALDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +    T +    + G  L  AL  +++  RD +   A
Sbjct: 223 ELSYLPERRLAYEGLARRTNHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAA 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ AK +  +I      +  ++    P  +N++
Sbjct: 283 EKKAAALPAKLTVPMILFFLPVLFIVI--MGPAAINIM 318


>gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
           21756]
          Length = 327

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59
           ++ +KR    +  FP++LD+++  V +G+ V  A+  +  +       +  E   +    
Sbjct: 168 NIAQKRRESIVAAFPDSLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTAEL 227

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                  ++   + R      V   +T +    + G  L  AL  +++  R+ +   A+ 
Sbjct: 228 SYLPERRQAYENLARRTNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSAEK 287

Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144
           +A ++ AK +   I+  LP     ++
Sbjct: 288 KATALPAKLTVPMILFFLPVLFIVIL 313


>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 295

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 138 IRVRREHIERTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWSDELRITLRQMDMGVS 197

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 198 RRQAFEELRRRNDSEQVAMFVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARA 257

Query: 125 EAKASAWI 132
             KA+  +
Sbjct: 258 VPKATFAV 265


>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 322

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++    +R     + FPN LD+I+  V AGL +  A   +  +   +   V     R   
Sbjct: 158 VRIKADRRMEAITNGFPNCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNL 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++ RM     + E+  F+T++    +LG ++   L   +  +R+++ M+A
Sbjct: 218 HLRAGATREEALHRMATLAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRA 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +    S  ++  +   +  ++    P  + V+
Sbjct: 278 EEKAHRLPVLISLPLVTCMLPTMIGVLMI--PAAIRVV 313


>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
           JL354]
          Length = 342

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
            KKRT       P+ALD++V    AGL +  A   +  +       +  EF         
Sbjct: 186 AKKRTDAIRKGLPDALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSF 245

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +   +   +   + L+ V    T +    + G  L+ AL  LS   R+ + M+A+ +A
Sbjct: 246 LNNRKMAFDNLAYRVDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKA 305

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
             + A  +   I+  LP     ++
Sbjct: 306 ARLPAIMTVPLILFILPTLFIVIL 329


>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
 gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
          Length = 324

 Score = 89.0 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +      P+  EF     
Sbjct: 166 LKNAITKRQLSIRRAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   L  V      +    + G  LS+++  +++  RD +  +A
Sbjct: 226 ELSYLPDRKQAYENLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
 gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
          Length = 325

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ + +    +  +    S  +  E      
Sbjct: 166 LKNKIDKRKLTIQRAWPDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  +  AL  ++   R+++   A
Sbjct: 226 ELSYLSDRRIAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K +  +I      +  ++    P  + V+
Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFII--MGPAVIQVM 321


>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 293

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 1/146 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + + ++R A+ L      LD +  +V AGL ++ A+   V +    P R E   V+    
Sbjct: 136 RDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVEKGPAGPFRWELEHVLRDLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL+ +E++ R+   + ++EV+ F   +    ++G  L+++L   S   R  +  +A+ Q
Sbjct: 196 SGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQRAEKQ 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+    K    ++  +      ++ F
Sbjct: 256 AMEAPVKLVFPLLVFIFPITFIVLGF 281


>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
 gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
          Length = 324

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +  R  K  +DFP+ALD++   V AGL +  A+  +  +    SD V  E   ++ 
Sbjct: 157 LSQRVAARQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSDVVAGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDLL----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    +V    P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVY 312


>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 300

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+ 
Sbjct: 143 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMG 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 203 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 262

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 263 VPKATLMITTFMVPATMILL 282


>gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
 gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
          Length = 370

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLS 64
           R ++     P+ LD++   V  G+ V  A+  I+ + +     +  E + VIE   +G +
Sbjct: 199 RRSEIEQGIPDMLDMLNMCVSQGMTVPHALKKIISELAKVYPALAHELKIVIEQSSIG-T 257

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S+++S   + + + EV  F+ ++    Q+G N++ AL   S  +R+  + +A  +A   
Sbjct: 258 FSQALSNFSKRIDVPEVHSFAALLIQTDQMGTNVTSALQEYSDNMRESLSQRADEKANKA 317

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             K     +  L   +   ++   P  + +
Sbjct: 318 TFKLLFPTVLCLMPAI--YIFLLGPAIVEL 345


>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
 gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
          Length = 302

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           +K R  +     P+ LD++   V AGL +  A+           +P+  E R+V      
Sbjct: 147 VKARQLEIFHPLPDILDLVTLCVEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTMEVRA 206

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A+   
Sbjct: 207 GKPRVESLKDMAVRTRVEDIGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMAEE-- 264

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147
               AK +  +I  L   +   +   
Sbjct: 265 --AAAKTTIKLIFPLIMFIFPALLVV 288


>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 199

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66
                 FP+ALD++V  V AGL V  A+  +  + +     +  E               
Sbjct: 49  QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++   +     L +V   ST +    + G  +++AL  LS+  R+ +   A+ +A S+ A
Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  +I      +  ++    P  + V+
Sbjct: 169 KLTVPMIVFFLPVLFIVI--AGPAAIQVM 195


>gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
 gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
 gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
 gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
          Length = 362

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + ++ +KR    +  FP+ALD+++  V +G+ +  A+  +  +   SS  +  E   +  
Sbjct: 203 ISNVAQKRRESIVAAFPDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTA 262

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +   +T +    + G  L  AL  +++  R+ +   A
Sbjct: 263 ELSYLPDRRLAYENLARRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAA 322

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++ A+ +  +I      +  ++    P  M V
Sbjct: 323 EKKAAALPAQLTVPMILFFLPVLFIMI--LGPAIMKV 357


>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
           CGA009]
 gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
 gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
          Length = 324

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I+KR       FP+ALD+++  + +G+ +  A   +  +      P+  EF     
Sbjct: 166 LKNAIQKRQLSIKRAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKQAYENLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 326

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR    +  FP++LD+++  V AG+ +  A+  +  +    S  +  E      
Sbjct: 169 LSNQAAKRRDSIMQAFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V   +T +    + G  L +AL  +++  RD +   A
Sbjct: 229 ELAYLQDRRAAFENLGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++ AK +   I+  LP     ++
Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVII 316


>gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 286

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 74/181 (40%), Gaps = 3/181 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
            +R  +  + +P  +D +V  VRAG  +   +A +       +R  F    +        
Sbjct: 100 HRRAREAREAWPEVVDSLVSGVRAGAALPTLLADLGSGGPPALRGAFEAFGQDYRAHGRF 159

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ R+   +           + +   +GG +L+  L +L+ +LR+   ++ +++A   
Sbjct: 160 DVALDRLKDRLADPVADRIVEALRLARSVGGADLARLLTDLAVLLREDARVRGELEARQS 219

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +A +  + P+ V  L+   +      + N P+G  +L +  A  +    +MR++  
Sbjct: 220 WTVGAARLGVAAPWAVLLLISQGARS--ARVWNTPQGMAVLALGGACCVAAYALMRVLSR 277

Query: 185 F 185
            
Sbjct: 278 L 278


>gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19]
 gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19]
          Length = 362

 Score = 89.0 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 2/180 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           LI++R  +     P A+  +   V AGL + +++  I       +  EF RVI   + G 
Sbjct: 177 LIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISESDYGALSEEFERVIREINSGT 236

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            ++ ++ RM     +  +      I+   + G N+++ L  L+  +      + +     
Sbjct: 237 PINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIAHELRQRYREYGHK 296

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           ++A A  +I+ +L       V       ++   L+  P    ++      M    + +  
Sbjct: 297 LQALAFPYIMLTLVIPTLVTVAMLLAANLSGAFLVPPPLFGPMIAGMVGVMAGIFLFIFK 356


>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 324

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    +V    P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMVVLLGPAMIHVY 312


>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
 gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
          Length = 324

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +   SS+ V SE   ++ 
Sbjct: 157 LSQRVKVRQQKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    ++    P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMLVLLGPAMIHVY 312


>gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
 gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
          Length = 290

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++  IK R  +     P  LD++   V+ G+ V  +++ +  +       +     ++ E
Sbjct: 133 LQAKIKARIHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMNE 192

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + L +S+  M   +P  E+  F   ++     G ++   L  L+  +R+ + ++ 
Sbjct: 193 RSRM-VGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYSVLTTLASDIREVQMLEL 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   +  L+   +PG M +++N
Sbjct: 252 EERIGKLAAKMSVPLIVFIMIPIVILI--AAPGVMRLMLN 289


>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 324

 Score = 88.6 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    ++    P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVY 312


>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 56/137 (40%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S  ++  +
Sbjct: 145 IERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEGPWSDELRITLRQMDMGVSRRDAFDQ 204

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R    ++VS F T +    +LG  + + L  ++  +R      A+ +A     K++  
Sbjct: 205 LRRRNDSEQVSMFVTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKSTLV 264

Query: 132 IIGSLPFCVSTLVYFTS 148
           +   +      L+  + 
Sbjct: 265 VTLVMLPATMILIVVSF 281


>gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 301

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 71/175 (40%), Gaps = 6/175 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +AL     ++R   AG   +  A+      ++  ++     +++   +   L  ++ R  
Sbjct: 102 DALATWTEALRDTIAGAVGLEQAIPATAVNAAPAIKPGLNLLVDRLRIREPLPSALMRFA 161

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L E L+ L+   R+  +++ KV A     + S  +
Sbjct: 162 DDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAAERRSTRRSVQV 221

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + ++   V+  +   +P Y+        G  +L +  A   +G++ +R +   +V
Sbjct: 222 VVAITLLVAAALVLFNPAYVEP-YTSFVGQFVLFLVIALYAVGLVWLRKLAKIEV 275


>gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58]
 gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58]
          Length = 329

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           ++KR+A      P+ALD++V    AGL V  A A +  +       +  EF         
Sbjct: 175 VQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFARVARELGKAYPELGDEFHLTAIELSF 234

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +   +   + L  V    T +    + G  L+ AL  LS   R  + M+A+ +A
Sbjct: 235 LTERRMAFENLASRVKLDAVKGVVTTMIQTEKYGTPLASALRVLSAEFRHERMMRAEEKA 294

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
             + A  +  +I  +   +  ++ 
Sbjct: 295 ARLPAIMTVPLILFILPTLFVVIL 318


>gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4]
          Length = 245

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 78/182 (42%), Gaps = 8/182 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIE 57
           +  ++  +   +F   + +IV S++ G  +  A+     +          +  +   + +
Sbjct: 62  IKAEKRGRLSAEFKEFMMLIVASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQ 121

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + L ++     + + L+E    + +IS   + GGN  + + + +  + +   +K 
Sbjct: 122 KIAMNVQLEKAFFEFAKAIELEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQ 181

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++ ++ E +    ++  +P  +   +  TSP ++  +  +  G  L+  +   ++ G +
Sbjct: 182 EIETITTEKRLELKVMCIMPIGILAYISLTSPNFIAPIYGNVLGAGLM--SLCLIVYGAL 239

Query: 178 VM 179
           ++
Sbjct: 240 II 241


>gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 328

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 289

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 66/161 (40%), Gaps = 2/161 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  + +RT     + P  + ++   + AGL +++AV  +  +S   +  E  R +    
Sbjct: 131 LRRRVSERTRILRRELPRFVHLLATCLEAGLGLTEAVRRVAAESPGLLAGEMLRAVHEMA 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +   +       E+    + +    + G +++E L    R +R+RK  +A+ +
Sbjct: 191 AGKPAQRAWRDLTERHESPELKEVVSALQQSHRWGVSIAEQLRFTLRTMRERKQQQAQQK 250

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           A     +    ++  +   + T+V    P  + +L +   G
Sbjct: 251 AHEASVRMRVPMVALI--LMPTIVIILGPAVLRLLRHFAGG 289


>gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842]
 gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842]
          Length = 327

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 5   IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I    +  S+     V DA+  +       +R E  +      
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ FF  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 199 QGKSVAEALSSLDKKYPYKELMFFHEMLDVADKNGGKNTEALESIALDFEDRKVKQMQLY 258

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A + +     + +A I+ +LPF     +    P   ++L+  P G ++   
Sbjct: 259 AETTQGMKAFRNTAAIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVF 305


>gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 297

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 140 VRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDRVSEKYEGPWADELRITLRQMDMGVS 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + +    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 200 RRQAFEELRKRNDSEQVAQFVTALQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARA 259

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 260 VPKATMVITTFMVPGTMVLL 279


>gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
           16841]
 gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 7/190 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-------SDPVRSEFRRVIE 57
           +KKR       F + L  +  +VRAG     AV   +          +D V      +++
Sbjct: 51  VKKRKKTLRLQFKDFLGSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQ 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            +  G+ L E          L+++  F+ V SV         + L     I+RD+  ++ 
Sbjct: 111 YEKGGIPLKELFEDFADRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQ 170

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++   + AK+   ++  +P  +   +     G ++ L     GH+   +A     +  +
Sbjct: 171 EIETTIISAKSETMVMLIMPIVIVVAMSGMGSGLLDSLFTTAAGHLSATIALIIFAVSYI 230

Query: 178 VMRLMINFDV 187
           +     + +V
Sbjct: 231 LAVKSSDIEV 240


>gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14]
 gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14]
          Length = 325

 Score = 88.6 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +       +  EF     
Sbjct: 166 LKNAITKRQISIKRAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
 gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
          Length = 331

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLG 62
           KKR       +P+ALD+++  V +G+ +  A+  +  +    S  +  EF          
Sbjct: 178 KKRQQSIKMAWPDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTAELSYL 237

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                +   +     L+ V   +  +    + G  +++AL  L++  RD +  +A+ +A 
Sbjct: 238 QDRRVAFENLGNRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEAEKKAA 297

Query: 123 SMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++  K +   I+  LP  +  ++    P  + V+
Sbjct: 298 ALPPKLTVPMILFFLPVLIGVIL---GPAAIQVM 328


>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
 gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
          Length = 301

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 1/152 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSLSESI 69
                 P+A++++  ++ AG P+      +      P+  EF  V    + LG S  E++
Sbjct: 150 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 209

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +    Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K  
Sbjct: 210 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 269

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             +          LV   +   +   +ND  G
Sbjct: 270 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 301


>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 324

 Score = 88.2 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R  K  +DFP+ALD++   V AGL +  A+  +  +    S+ V SE   ++ 
Sbjct: 157 LSQRVKVRQRKIFEDFPDALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++SE+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNLALRTGVEDIESFCAMLIQADRFGTSISESLRVLSDML----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    ++    P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMMVLLGPAMIHVY 312


>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
          Length = 302

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
           +K R  +     P+ LD++   V AGL +  A+           +P+  E R+V      
Sbjct: 147 VKARQLEIFHTLPDILDLVTLCVEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTMEVRA 206

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    ES+  M     ++++  F+T+++   + G +LS AL   S  LR ++   A+   
Sbjct: 207 GKPRVESLKDMALRTRVEDIGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTAEE-- 264

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147
               AK +  +I  L   +   +   
Sbjct: 265 --AAAKTTIKLIFPLIMFIFPALLVV 288


>gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652]
 gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652]
          Length = 328

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
 gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
          Length = 290

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++  IK R  +     P  LD++   V+ G+ V  +++ +V +       +     ++ E
Sbjct: 133 LQAKIKARVHRVSTQMPYLLDLMAVCVQTGMTVEASLSYLVKEMKGFNKDLTQVLTKMNE 192

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + L +S+  M   +P  E+  F   ++     G ++   L  L+  +R+ + ++ 
Sbjct: 193 RSRM-VGLEKSLEEMYVEIPSNEMRSFVMTLTQSMHYGSSIYNVLTTLASDIREVQMLEL 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   +  L+   +PG M +++N
Sbjct: 252 EERIGKLAAKMSVPLIVFIMIPIVILI--AAPGVMRLMLN 289


>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
 gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
           BisB18]
          Length = 324

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +G+ +  A   +  +      P+  EF     
Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 313

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 1/152 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSLSESI 69
                 P+A++++  ++ AG P+      +      P+  EF  V    + LG S  E++
Sbjct: 162 AIELALPDAMELLGIAIAAGSPIEQCFREVAESMDGPLAREFSLVDREVNLLGRSREEAL 221

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +    Q+VS F+  +      G +L+E LA  + + R+    +A  +   M  K  
Sbjct: 222 EHLGQRCRSQDVSAFTAQLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLD 281

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
             +          LV   +   +   +ND  G
Sbjct: 282 IVLSLCFLPPTVALVVVPTVVNLLNFLNDSMG 313


>gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
 gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
          Length = 324

 Score = 88.2 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ V  A   +  +       +  EF     
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L  +L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 291

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    LG+ 
Sbjct: 134 IRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDRVSTRYEGPWADELRITLRQMDLGMG 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E+ + + R    ++V+ F T +    +LG  + + L +L++ +R      A+ +A   
Sbjct: 194 RREAFTELRRRNDSEQVAMFVTALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARA 253

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  I   +      L+
Sbjct: 254 VPKATLMITTFMVPATMILL 273


>gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
 gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
          Length = 284

 Score = 87.8 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H  +   A+    +P+A+D +  ++RAGL + +A+  +  +  + +R  F        
Sbjct: 93  VNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQLSYRGPEELRDAFAHFSRDYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  S++R+  Y+           + +  ++GG +L + L  LS  LR+    ++++
Sbjct: 153 ASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGSDLGKLLGTLSDFLRENARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A       +A +    P+ V  L+  T P    ++ N   G ML+   AA  L    +M
Sbjct: 213 LARQSWTVNAARLSCVAPWFVLCLM-ATQPAA-RMVYNSFAGAMLMIAGAAISLAAYRLM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
 gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
          Length = 291

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 80/187 (42%), Gaps = 3/187 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  ++KR   F   +P+ +D ++ +VRAG+ + +AV  +     +  R+ F+       
Sbjct: 102 LRARLQKRQQLFAGAWPDIVDSLLTAVRAGVSLPEAVVQLSHSGPEITRTYFQHFAMEYR 161

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
                  +++ +      +       VI +  ++GG  +   L +LS ++R+   +  ++
Sbjct: 162 SSGKFDVALTSLQSNFADKNSKRVFEVIRLGREVGGSEMGNILRDLSAMMRENLRISGEI 221

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           QA       +A +  + P+ V  ++   +    +   +   G M+L +          +M
Sbjct: 222 QARQSWTVNAARLAVAAPWIVLLMISMRTDAASS--YSTTNGMMILALGGIACTFAYWLM 279

Query: 180 RLMINFD 186
           + + +FD
Sbjct: 280 QKLGSFD 286


>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 282

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQ 59
            L+++R    + + P AL  ++  V AG PV  A +  +        P+  E+ RV+   
Sbjct: 129 RLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWDRVVIAL 188

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118
             G S S ++ R  R   +QEVS F+TVI +  + GG+    AL  +S  L +++   A+
Sbjct: 189 RNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEKRKAVAR 248

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
            +     +K    +   +   +  +V+  +P  +
Sbjct: 249 SRGEEASSKL---VFPLVGILLVLMVFVAAPAML 279


>gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  + S     +  EF     
Sbjct: 166 LSNAISKRQLSIRRAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 299

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+ LD++  +V AG+    A+A +      P+  E    +     G S+ ++   + R 
Sbjct: 152 LPDFLDVLAVTVMAGVNFRAALARVSQHFEGPLSEEIDLTLHQIANGASVRQAFQDLRRR 211

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + V  F + +    +LG  L+E+L  ++  +R     + +  A     + +      
Sbjct: 212 SASESVGQFVSALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVTSMV 271

Query: 136 LPFCVSTLVYF 146
           L       ++ 
Sbjct: 272 LVPGALVFIFV 282


>gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
 gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
          Length = 285

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +    +P+ +D +  +VRAG+ + +A+  +  +    VR+E                S+ 
Sbjct: 104 ELRQVWPDVVDDLTSAVRAGMTLPEALISLSERGPQEVRAELHAFAVDYRASGRFVASLD 163

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   +           + + + +GG +L   L  LS  LRD    + +++A        
Sbjct: 164 ALKERLADPVADRIVETLRIATDVGGSDLGRMLRTLSEFLRDDLRTRGELEARQSWTVNG 223

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           A +  + P+ V  L+  T P       + P G ++L       ++  + M  +   
Sbjct: 224 ARLAVAAPWVVLALMS-TRPET-AAAFDTPAGVLMLLAGGLTCVVAYLAMMRIGRL 277


>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 324

 Score = 87.8 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +       V SE   ++ 
Sbjct: 156 LSRRIASRQRVIFEDFPDALDLLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G ++ ++L  LS +L      + 
Sbjct: 216 EMRSGFTKEAALRNLALRTGVEDIESFCAMLIQADRFGTSIGDSLRVLSDML----RTRR 271

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           +++A    AK +  ++  L FC+   +      P ++++ 
Sbjct: 272 RMRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIY 311


>gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 327

 Score = 87.4 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61
           I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E          
Sbjct: 173 ISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTAELSF 232

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++  + R   L+EV      +    + G  +++AL  L++  RD++   A+ +A
Sbjct: 233 LPERRVALENLGRRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
            ++  K +   I+  LP  V+ ++
Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316


>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
 gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
           ruminantium M1]
          Length = 309

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +  +  P+ L  +   +R G+ + +A+  +    + P+  E RRV+    +G S 
Sbjct: 92  ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEHGNGPLYDELRRVVVEIRMGKSF 151

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ES   M + +  +++     +I    + GG L++ ++++S  LR    +K + ++  M 
Sbjct: 152 DESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKSSVMM 211

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +     +   +    +  +      +M  L        L    A   LI
Sbjct: 212 SIMFLVLASVVAAPFALGMVGVYSSFMIELNRSSAICQLAPTVALIYLI 260


>gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 404

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +K  I+ R  + +   P  +D++  SV AGL    A+  +V ++    +  EF  +I+  
Sbjct: 247 IKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKTALSEEFETMIKEI 306

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +G S +E++  +   + L ++S F   +     +G ++   L  LS  +R +K+ + + 
Sbjct: 307 RIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQKKSSEVEK 366

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
              +   K    ++  +   V  +V
Sbjct: 367 AGATAATKILFPMLFLIVPAVFIVV 391


>gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36]
 gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36]
          Length = 294

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   +    +     P+ALD++V  V +GL +      +  +    S  +  E+     
Sbjct: 133 LKWRARTVNYRIALALPDALDLMVICVESGLTLEAVFQRVGHEMTAVSPELSREWLITEA 192

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  S   +++ + +   L EV      +S   + G  ++  +  ++   R  + ++ 
Sbjct: 193 ELRLLDSRLTALNNLAKRTDLVEVENMVIALSQAEKYGSKIAPTMRLIASDSRQYQYLRL 252

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK S  ++  +   V  L+   +P  + +L
Sbjct: 253 EEKVGKIPAKMSLPVVVLIMLPVVVLI--VAPTIIALL 288


>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 313

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  K L  FP   +++  +V AG   + A+  I       +  EF + +   H
Sbjct: 158 LGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRICHGVIGDEFTKTLNDIH 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + +++  M   M +  ++ F   I V ++ G  L++ L + ++ +RD    K ++ 
Sbjct: 218 AGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVLRDQAQDVRD--ASKRELM 275

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            ++ + + S  +         T+V+   PG
Sbjct: 276 EVAGKREISMLVPVVFGILPLTIVFAVFPG 305


>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
 gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
           alexandrii DFL-11]
          Length = 324

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I KR       +P+ALD+++  V +G+ +  A   +  +       +  E      
Sbjct: 166 LKNQIDKRKLGIQRAWPDALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   +  V      +    + G  +  A+ N++   R  +   A
Sbjct: 226 ELSYLSERRMAYENLAKRTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFA 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A S+  K +  +I      +  ++   +P  +  +
Sbjct: 286 EQKAASLPPKLTVPMIMFFLPVLFFVI--LTPAVIQAM 321


>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 327

 Score = 87.4 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I KR     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 160 LSRRITKRQRTIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++  +     ++++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 220 EMRSGFTKDTALRNLALRTGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +A  +  K            +  L++   P  M VL+     H+   +  +F  IG
Sbjct: 280 EERAARIALKL-----------LFPLIFCIFPALMGVLLGPAMIHVYRVLLPSFATIG 326


>gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 320

 Score = 87.1 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHL 61
           +++RT       P+AL+++V  V AGL + DA+  +  +   S   +  E        ++
Sbjct: 161 VRRRTKAAAAGLPDALELLVVCVEAGLSLEDALQRVAQELKNSQPALADELTLTWAEINI 220

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             S  ++++ +   + +  V    ++IS   + G  L+++L   +  +R+ +    + +A
Sbjct: 221 LPSREQALANLADRVNVPTVKSMVSMISQSMRYGTPLAQSLRVGATEMRNDQMTLLEERA 280

Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144
             + A  +  ++  +   +  +V
Sbjct: 281 NRLPALMTIPVMLFIMPTLFLIV 303


>gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10]
 gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10]
          Length = 331

 Score = 87.1 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +L  KR    +  FP+ LD+++  V +G+ +  A   +  +       +  E      
Sbjct: 174 LSNLAAKRQQSIMGAFPDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTA 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V    T +    + G  L +AL  +++  RD +   A
Sbjct: 234 ELSYLQDRRVAYENLAKRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAA 293

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A S+ AK +   II  LP     ++
Sbjct: 294 EKKAASLPAKLTVPMIIFFLPVLFVVIL 321


>gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42]
          Length = 328

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 65/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMSKRQHSIKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     L+ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
 gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 301

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 59/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 144 VRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVS 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + +    ++V+ F + +    +LG  ++E L  L+  +R      A+ +A   
Sbjct: 204 RRQAFDELRKRNSSEQVAQFVSALQQGEELGSPIAETLIQLATDMRRTDAQNARRRAAKT 263

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  +      L+
Sbjct: 264 IPKATMVTLVFMLPATMILI 283


>gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512]
          Length = 328

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 65/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 312

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++    +R  K   + P+ LD++   + AGL +  A+  +  +  D    +  E  +   
Sbjct: 150 LRRQASERRLKIWQELPDVLDLLNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFL 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL   E + ++V    +  +S    V+   S+LG +++E+L   S  LR  +   A
Sbjct: 210 EIQSGLPRKEVLEKIVDRNQVNALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAA 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +   +   +  +V    P  + +L
Sbjct: 270 EEQGAKVSTKLTFPMTMLILPALLLVV--LGPAMIKML 305


>gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074]
          Length = 309

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++ R        P+ LD++   V +GL    A+  +  +   P   E R  +    +G+S
Sbjct: 152 VRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 211

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  +++ L  ++  +R      ++ +A   
Sbjct: 212 RRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRRAAKT 271

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  L      L+
Sbjct: 272 IPKATMVTLVFLLPATMILI 291


>gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510]
 gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510]
          Length = 334

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
           L K+R +      P+ALD+++    AG  +  ++A +  +    +  +  E     +   
Sbjct: 177 LAKRRQSAIARTLPDALDLLIICANAGYSLDLSLARVGREMRLAARAMSEELVITADELR 236

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +     E++  +     L+ +      +    + G  L++AL  L+  +R  + M  + +
Sbjct: 237 VLTDRREALRNLAERNDLEALRSLVATLLQAQKYGTPLTQALRTLAAEMRHARMMAIEER 296

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A  + A  S  ++  +   V  +V
Sbjct: 297 AARLPALISVPLMVLILPAVFIIV 320


>gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 285

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+A+D +  +VRAG+ + +AV  +  +  + +R++F              E++  +   
Sbjct: 109 WPDAVDNLASAVRAGMSLPEAVMQVGERGPEVLRADFVAFGRDYRATGRFEEALDLLKIR 168

Query: 76  MPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +   + GG+L   L  LS  LRD    + ++++        A +  
Sbjct: 169 LADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGELESRQSWTVNGARLAV 228

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V   +    P  +      P G ++L V AA  L     M  +   
Sbjct: 229 AAPWLVLASMSL-QPDVIAR-FGSPTGTLILVVGAATCLGAYRAMTWIGRL 277


>gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 305

 Score = 87.1 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 14/167 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++ L  +R+A      P+ LD++V +V +GL +  AV  +      SS  +  E      
Sbjct: 146 LEKLALRRSALIARQMPSMLDLLVIAVESGLGLDAAVQRVSRDLAASSPVLAHELAIFSL 205

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              LG +  +++  + +   + E++    ++    + G ++  ++   +  LR ++  K 
Sbjct: 206 ELKLGAARGDALRNLAKRCGVDEMAGLVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKL 265

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           + QA  +  K            +  +++   P  M V+      +++
Sbjct: 266 EEQAAKIPLKL-----------LFPVLFLIFPAIMAVMAGPAVINIV 301


>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 288

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQ 59
           +K   K+R    L   P  +D++  S+ AGL +S A+   +   +  P+  E  RV+   
Sbjct: 131 LKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAGGPLMVEINRVLRDV 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +  +++      +    ++ F + +    + G +L   L   +   R  + ++A+ 
Sbjct: 191 RAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRTERFLRAEK 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +I  +  C   ++ F
Sbjct: 251 LAMEAPVKMLGPLIFFIFPCTFIVIGF 277


>gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like
           protein [Vibrio sp. MED222]
 gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like
           protein [Vibrio sp. MED222]
          Length = 301

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  + K R  +     P  +D++   V+ G+ +  ++  +  +       + S      +
Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L + +  ++  + R +P  EV  F   ++   Q G ++   L  L+  +R+ + ++ 
Sbjct: 204 RARL-VGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLEL 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT-SPGYMNVLIN 157
           + +   + AK S   I  + F +  +V+   +PG M +++N
Sbjct: 263 EEEIGKLAAKMS---IPLIVFILIPIVFVIAAPGVMRMMLN 300


>gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
 gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
          Length = 325

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  ++ +    +  E      
Sbjct: 166 LHNAITKRQLSIKRAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V      +    + G  L+++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
 gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
          Length = 258

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHL 61
            K+R      D P  +D++  SV AGL    A+  IV +++     +  EF  V++   +
Sbjct: 103 KKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQKIVDKANGTDSVLAEEFSIVLKDIKI 162

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S ++++  M   + + E++ F  V+      G ++S+ L + S  +R  + ++A+   
Sbjct: 163 GSSKAQALKEMAERLDMNEITSFVAVLVDAESTGASISQVLKDQSVQMRLERFVRAEKAG 222

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              +A  +  I   L    +  +    P  ++ +  
Sbjct: 223 --AQASQTMLIPLMLFILPAVFIIVFGPVAVSFMYG 256


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +L++KR +     +P+ALD+++  V +G+ +  A+  +         P+  E    I 
Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 +   +         +  V   +  +    + G ++ ++L  L    R  + M+A
Sbjct: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A S+  K +   II  LP  +  ++
Sbjct: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315


>gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio
           splendidus LGP32]
 gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like
           protein [Vibrio splendidus LGP32]
          Length = 301

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  + K R  +     P  +D++   V+ G+ +  ++  +  +       + S      +
Sbjct: 144 LSSMAKNRQRRISRQMPYLIDLMAICVQTGMTIEASMKYLSIEMKSFDKELSSLLEVTNQ 203

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L + +  ++  + R +P  EV  F   ++   Q G ++   L  L+  +R+ + ++ 
Sbjct: 204 RARL-VGMENALEELYRKVPSPEVRSFVMTLTQSIQHGSSIYNVLTTLAGDIREVQMLEL 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT-SPGYMNVLIN 157
           + +   + AK S   I  + F +  +V+   +PG M +++N
Sbjct: 263 EEEIGKLAAKMS---IPLIVFILIPIVFVIAAPGVMRMMLN 300


>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 293

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
                P  LD +  +V AGL ++ A+   V +  D  +RSEF  V+     GL+ ++++ 
Sbjct: 146 IRKQLPVYLDFLTLAVEAGLNINGAIQKAVEKGPDGALRSEFEHVLRDLKSGLNRADALR 205

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R      ++E++ F   +    ++G  L+  L   S   R  +  +A+  A+    K   
Sbjct: 206 RFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAPVKLVF 265

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      ++ F
Sbjct: 266 PLMMFIFPVTFVVLGF 281


>gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 327

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 5   IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I    +  S+     V DA+  +       +R E  +      
Sbjct: 141 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHPSIREELDKATFKLK 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ F+  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 199 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 258

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A + +     + +A I+ +LPF     +    P   ++L+  P G ++  +
Sbjct: 259 AETTQGVKSFRNTASIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVL 305


>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 349

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 35/174 (20%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R A+ ++D P ALD+I   + AG P+  A+ ++ G    P+ +E   V  +  LG S
Sbjct: 164 AQRRQARLVEDLPLALDLIAACLTAGAPIVAALDIVAGAVGGPLGTELGMVSRSLRLGAS 223

Query: 65  LSESISRM---------------VRYMPL----------------QEVSFFSTVISVQSQ 93
           ++E+  R+                R +P+                 E++ F+  +    +
Sbjct: 224 MAEACGRLLGPEPSSSRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEE 283

Query: 94  LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
            G  L+ AL  L+   R R+      +AL+   +A    +  L  C        
Sbjct: 284 SGARLAAALGRLADQTRARRQ----ERALTAARRAGVTAVAPLGLCFLPAFVAL 333


>gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 317

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDP-VRSEFRRVIETQHLGLSLSESIS 70
           ++ P+ALD++V  V +G+ +  A+  +  +   S P + +EF+ +      G    +++ 
Sbjct: 167 NELPDALDLLVVCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGDALR 226

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   + L +++  ++++      G ++   L   S  +R +++ +A+ +A  +      
Sbjct: 227 GLSERVGLDDLNSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVLLLL 286

Query: 131 WIIGSLPFCVSTLVY 145
            +IG +   +   + 
Sbjct: 287 PLIGFILPALFIAIM 301


>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
           Re117]
 gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
           arilaitensis Re117]
          Length = 283

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 74/188 (39%), Gaps = 3/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H   KR A   + +P  +D +  ++RAGL + +A++ +       +R  FR       
Sbjct: 92  LRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAMVGPQILRPLFRDFALDYR 151

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              + + ++ ++   +         T + +  ++GG +L   L  LS  LRD    + ++
Sbjct: 152 ATANFAVALDQLGERLADPVADKILTTLRITREVGGTDLGHTLTTLSAFLRDDVRTRGEL 211

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A      ++A +  + P+ +  ++                G ++L +      I   +M
Sbjct: 212 AARQSWIVSAARLAVAAPWILLLVLGTQ--EAAKDAYMTVGGVIVLSLGMLVSFICYRIM 269

Query: 180 RLMINFDV 187
             +    V
Sbjct: 270 LRLGTLPV 277


>gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 323

 Score = 86.7 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++  V +G+ +  A   +  +    S  +  E      
Sbjct: 165 IRNKITKRQKAIQRAWPEALDLLLICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + R   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 225 ELSFLQDRRQAYENLGRRTGVEGVRAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + ++
Sbjct: 285 EKRAAALPPKLTVPMIVFFLPVLFAVII 312


>gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
 gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion
           system [Aurantimonas manganoxydans SI85-9A1]
          Length = 332

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K+   KR       +P+ALD+++  V +G  +  A   +  +    S P+  E   V  
Sbjct: 174 VKNRATKRRLSISRAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCA 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V    T +    + G  L  AL  LS+  RD++   A
Sbjct: 234 ELSYLPDRKVAYDNLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLA 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++    P  + V+
Sbjct: 294 EKKAAALPPKLTVPMIVFFLPVLFAVI--IGPAIIKVM 329


>gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804]
 gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii]
          Length = 290

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 1/133 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           + P  LD++   + +GL +  A+          P+R E    +     G+  + ++  + 
Sbjct: 147 ELPFVLDMMTLCIESGLGLHGALQQAAQHGPPGPLRQELHHALADMRAGMPRAAALKALA 206

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  V  +   ++    LG +L   L   +   R  +  +A+  A+    K    +I
Sbjct: 207 DRADSPAVRSWIAALTQADSLGMSLGAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLPLI 266

Query: 134 GSLPFCVSTLVYF 146
           G +  C   ++ F
Sbjct: 267 GCIFPCTFIVLAF 279


>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
 gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
          Length = 334

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++   +R  +     P+ALD+++  +  G+P+  A+  +  +   S   +  EF  +  
Sbjct: 142 LQNQANRRVHRIQRGLPDALDLVMMCLTGGVPLRTALERVTDEVRFSHPDIAVEFEIIRR 201

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                 S+++++ +  + +   +V+  S +IS   +LG N+S AL + +  +R +   +A
Sbjct: 202 HADAN-SMADALKQFAKRIDAPDVNALSLMISQTERLGTNVSTALIDFADGVRRKYRQRA 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +  +     K    II  +   +  L +
Sbjct: 261 EENSSKTSIKLLFPIIFCMAPPIYILFF 288


>gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 324

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + + I KR       FP+ALD+++  V +G+ +  A   +  +      P+  EF     
Sbjct: 166 LTNAISKRQLSIKRAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021]
 gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 327

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61
           I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E          
Sbjct: 173 ISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSF 232

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++  +     L EV   +  +    + G  +++AL  L++  RD++   A+ +A
Sbjct: 233 LPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
            ++  K +   I+  LP  V+ ++
Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316


>gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 290

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +   VRAGL + +AV  +  +    +R  F           S S +++R    
Sbjct: 114 WPEAIDHLSSGVRAGLSLPEAVCGLSARGPVALRPLFEVFAREYRATGSFSLALNRFKES 173

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                       + +  ++GG +L   L  LS+ LR+    +A++ A        A +  
Sbjct: 174 AADPVADRMVAALHITREVGGTDLGAMLKTLSQFLREDARTRAELTARQSWTVTGAKLGV 233

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  L+  T P   +   N  +G +LL V     L    VM+ +   
Sbjct: 234 AAPWVVLGLL-ATRPETADA-YNTAQGTVLLVVGLVISLCAYSVMKRIGRL 282


>gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 285

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P  +D +   VRAGL + +AV  +  +    +R  F R           +ES+  +   
Sbjct: 109 WPEVVDHLASGVRAGLSLPEAVGQLGERGPVELREPFARFAADYRATGRFTESLDLLKAR 168

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  ++GG +L   L  LS  LR+    + +++A      + A +  
Sbjct: 169 LADPVADRIIEALRLTREVGGSDLGRLLRTLSTFLREDARTRGELEARQSWTVSGARLAA 228

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V   +  T P       +   G ++L   AA  ++   +M  +   
Sbjct: 229 AGPWVVLAFL-ATRPET-ARAYDSAAGVLVLAGGAACSVVAYRLMVKIGRL 277


>gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 327

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHL 61
           I KR       +P+ALD+++  V +G+ +  A+  +  +    S P+  E          
Sbjct: 173 ISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSF 232

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++  +     L EV   +  +    + G  +++AL  L++  RD++   A+ +A
Sbjct: 233 LPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKA 292

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
            ++  K +   I+  LP  V+ ++
Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316


>gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
 gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
          Length = 324

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + I KR       FP+ALD+++  + +G+ +  A   +  + +     +  EF     
Sbjct: 166 LSNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R   L+ V      +    + G  L ++L  +++  RD +  +A
Sbjct: 226 ELSYLQDRKVAYENLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMILFFLPVLFVVIL 313


>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
 gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
           M045]
          Length = 296

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 139 IRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  +++ L  L+  +R      A+ +A   
Sbjct: 199 RRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIADTLIQLATDMRRTDAQNARRRAAKT 258

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  +      L+
Sbjct: 259 IPKATMVTLVFMLPATMILI 278


>gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
           16841]
 gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS------EFRRV 55
           K   +++    L  F +A+  +  +++AG  + +A      + ++          E  ++
Sbjct: 54  KKRREQQKETLLLQFRDAMQSVAAALQAGYSMENAWRESEKEMTELYGQDGIFVGELHQI 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   +   + + +         +++  FS V     + GG+  + +A     + D+  +
Sbjct: 114 NQAVGMNQPIEKLLYEFALRSDCEDIQNFSDVFLFAKRSGGDFHKIIATTIEHISDKIEV 173

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           + +VQ +    K    I+  +P  +   +  TS  + 
Sbjct: 174 EREVQTVISAKKMEQKIMNVIPVFIILYLNLTSGEFF 210


>gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 296

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++ R        P+ LD++   V +GL    A+  +  +   P   E R  +    +G+S
Sbjct: 139 VRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDRVAERYEGPWADELRITLRQMDMGVS 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  +++ L  ++  +R      ++ +A   
Sbjct: 199 RRQAFDELRRRNSSEQVAQFVSALQQGEELGSPIADTLIQIATDMRRTDAQNSRRRAAKT 258

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  L      L+
Sbjct: 259 IPKATMVTLVFLLPATMILI 278


>gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
 gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
          Length = 266

 Score = 86.3 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRV 55
           K+  +KR    L +F + L+ +  S  +G    +A A               + +E R +
Sbjct: 77  KYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRII 136

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           I      + + + +        L++V  F++      + GG++ + + +  +I+ D+  +
Sbjct: 137 IAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDKIEI 196

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++ +  E +    I+  +P  +   +     G M+ +IN P   ++   A       
Sbjct: 197 EMEIKTMLTEKENELNIMMVMPLIIMVTLSGI--GTMSAVINTPFTVIVKIFAIGLFAAA 254

Query: 176 IMVMRLMINFDV 187
            M+ R +IN  +
Sbjct: 255 YMMGRKIINIRI 266


>gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
 gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234]
 gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
          Length = 323

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V +G+ +  A   +  +    S  V  E      
Sbjct: 165 IRNRITKRQQAIRRAWPEALDLLLITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 225 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 284

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + +V
Sbjct: 285 EKKAAALPPKLTVPMIVFFLPVLFAVIV 312


>gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis TXDOH]
          Length = 271

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 111 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 170

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 171 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 230

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 231 EEKAAKLAPKMTLPMMLFVMPTVALI 256


>gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099]
 gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099]
          Length = 339

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   S  +    + G  ++ AL  L+   RD++   A
Sbjct: 229 ELSYLQERKQAYENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + ++
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
           F0268]
 gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
           F0268]
          Length = 284

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 74/189 (39%), Gaps = 7/189 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVI 56
              +KR  +    F   L+ +  ++ +G+ + D++              + +  E   +I
Sbjct: 95  QCKEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETAEMI 154

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                 L++ + +  + +    +++  F+ + +V  + GGN+ E +   + I+ ++  + 
Sbjct: 155 LGLRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKMEIS 214

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++Q      K     +  +P  ++ ++        N   + P G + + +A        
Sbjct: 215 EEIQTAISSNKIQFTAMMIIPVVLTGMLRGMG-SSFNRSFSTPIGIVAVTIAIGIFAGAY 273

Query: 177 MVMRLMINF 185
           ++ + ++  
Sbjct: 274 VMGQRIMQV 282


>gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 284

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+R A   + +P+ +D +  ++RAGL +++A+  +  +  +P+R  FR       
Sbjct: 93  VRRRAKRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEKGPEPLRPYFRDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKV 119
            G S   S+  +   +           + +  ++ G +L   L  LS  LR+    ++++
Sbjct: 153 AGGSFETSLDLLKERLADPVADRIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A I  + P+ V  L+       +    N P G +LL       ++   +M
Sbjct: 213 EARQSWTVNAARIAVAAPWIVLVLLAAQPNALLA--YNSPSGWILLLAGLIISVVCYRLM 270

Query: 180 RLM 182
             +
Sbjct: 271 LRI 273


>gi|289675689|ref|ZP_06496579.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 96

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 51/94 (54%)

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
             + GGN SE + NL +++RDR+    +++A++ E + +A ++  LP  ++      +P 
Sbjct: 1   NHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFLAVNPN 60

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           Y+  + +D  G ++L  A A    G +V+  M+ 
Sbjct: 61  YLLHMWDDESGKIMLSAAFALQATGCVVLWRMLR 94


>gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 302

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 7/150 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +  ++K R  K     P+ +D++V  V AGL +  A+  +  +   +   +  E  ++  
Sbjct: 139 LSRMVKGRREKIRLSIPDMIDLLVICVDAGLGMDQAMLRVGQELGTTHPQIYEEIMQINR 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            Q  G    ES   M +   L E+  F  ++    + G  ++ AL+     +R ++  +A
Sbjct: 199 EQRAGKLRLESWQAMAQRTQLPEIDGFVNMLMQNERFGTPIARALSTFGDNIRQKRRQRA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +     + AK +  II  L   +   ++  
Sbjct: 259 EE----LAAKTTVKIIFPLVLFIFPSMFIV 284


>gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis
           E264]
 gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis E264]
          Length = 290

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 130 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 189

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 190 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 249

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 250 EEKAAKLAPKMTLPMMLFVMPTVALI 275


>gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
 gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
           12885]
          Length = 274

 Score = 85.9 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----RSEFRRVIETQHLGLSLSESI 69
           +   + L  ++  ++AG P+  A      +   PV    ++EF   +     GLSL E++
Sbjct: 94  EALESVLVTVIAHLQAGRPLRQAWVEAAREVVAPVLEPAKAEF---VAGLSAGLSLDEAL 150

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +      L+ +     V +   + GG+ +     +   LR+++   A V A + EA+ S
Sbjct: 151 GQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAARTAEARLS 210

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           A ++  LP  V+       P ++  L NDP G   L    A  L GI ++R +
Sbjct: 211 ARLLALLPVVVTAYALALDPAFVRPLWNDPLGRWGLSYGVASWLAGIYLLRRL 263


>gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 321

 Score = 85.9 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLG 62
           +KR  +    FP+ +D+++    AG+ +  AV  +  + +     +  +   +      G
Sbjct: 169 QKRIYR--RGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMTLQLRAG 226

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L E++  +   + L+E    + +     +LG +L++AL   S  +R ++ + A+ +A 
Sbjct: 227 KPLREALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILHAEERAN 286

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147
           ++  K     +  L  C+  +V   
Sbjct: 287 ALPVKM----MIPLGLCIFPVVMMV 307


>gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1]
 gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1]
          Length = 316

 Score = 85.9 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  +     P+ALD++V    AGLP+      +  +   S+  +  E      
Sbjct: 156 LKMRAASRGGRLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHA 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    ++++  +     ++ V    + +    + G  LS+AL  +S   R R  +  
Sbjct: 216 ELQILSDRTKALLNLSERCGVENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDL 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   V  ++
Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302


>gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1]
 gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229]
 gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247]
 gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 305]
 gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 576]
 gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1710a]
 gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 406e]
 gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280]
 gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia
           pseudomallei 1710b]
 gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia
           mallei SAVP1]
 gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 305]
 gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280]
 gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 406e]
 gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 576]
 gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1710a]
          Length = 314

 Score = 85.9 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
 gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
          Length = 295

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R +           + + +Q+GG +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG +  + + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 319

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  + A+ S  ++  +   +  ++   SP  + V+
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALVRVV 314


>gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei NCTC 13177]
          Length = 270

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 110 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 169

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 170 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 229

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 230 EEKAAKLAPKMTLPMMLFVMPTVALI 255


>gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 305

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P  +D++  SV AGL    A+  +V +   P+  E  R ++   +G    E++  M +
Sbjct: 160 QLPEVIDLLTVSVEAGLGFEGALTRVVEKMDGPLPQEICRALQEIRVGRPRREALREMAQ 219

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + ++E+  F   + +  Q+G +L+  L   S+ +R R+  +A+  A     K     + 
Sbjct: 220 RIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKM----LL 275

Query: 135 SLPFCVST--LVYFTSPGYMNVL 155
            L  C+     V    P  + ++
Sbjct: 276 PLVLCIFPATFVVLLGPAVLRIM 298


>gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 328

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +  +    +  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRAALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
 gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
          Length = 324

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ I KR       FP+ALD+++  + +G+ +  A   +  +      P+  E      
Sbjct: 166 LKNAISKRQLSIKRAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V      +    + G  LS++L  +++  RD +  +A
Sbjct: 226 ELSYLPDRKQAYENLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 286 EKKAAALPPKLTVPMIVFFLPVLFVVIL 313


>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 295

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R +           + + +Q+GG +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG +  + + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 317

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +KKR        P+ALD++V  V AG+ +  A+  +  +       + SE R +  
Sbjct: 154 LDARVKKRQKAIQRGLPDALDLLVVCVEAGMGLDAAIYRVCVEMASKEPVLSSELRLLTL 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +   + L+++     ++      G ++++ L   +  +R ++   A
Sbjct: 214 ELRAGKSRREALKNLSSRIGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +     + AK    ++  L F +    L+    P  ++++
Sbjct: 274 EE----LAAKLPVKLLFPLIFFIFPTLLIVILGPAVISLM 309


>gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 112]
          Length = 264

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 104 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 163

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 164 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 223

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 224 EEKAAKLAPKMTLPMMLFVMPTVALI 249


>gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 328

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR A     +P+ALD+++  + +G+ +  A+  +  +    S  +  E      
Sbjct: 170 VSNRMTKRQASIKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++        L  V      +    + G  L++AL  L++  RD +  +A
Sbjct: 230 ELSFLQDRRTALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   II  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317


>gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei S13]
 gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 668]
 gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei S13]
          Length = 314

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 313

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 64/152 (42%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R        P+ L  I   +RAG+ +  A+  +  Q   P+  E +R +    +G 
Sbjct: 91  MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSKQGEGPLYDELKRAVIEIKIGR 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++I  M   +  Q +     +I    + GG+LS+ +  ++  LR    +K + +A  
Sbjct: 151 TFDDAILSMSERLKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           M +     +   +    +  +     G+M  +
Sbjct: 211 MMSVMFLIVAAIIAAPFALGMIMVYSGFMESV 242


>gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 293

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65
             K     P  LD++   V+ G+ +  +++ +  +       +     R  +   + + L
Sbjct: 144 RHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGL 202

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P  E+  F   I    Q G ++   L  L+  +RD + +  + +   + 
Sbjct: 203 EQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLA 262

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           AK S  +I  +   +  ++   +PG + +L
Sbjct: 263 AKMSIPLILFI--LIPIVILIAAPGVLRML 290


>gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106b]
 gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106a]
 gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia
           pseudomallei 1106b]
          Length = 314

 Score = 85.5 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 339

 Score = 85.1 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   S  +    + G  ++ AL  L+   RD++   A
Sbjct: 229 ELSYLQERKQAYENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + ++
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 318

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  +  +    S  V +E + ++     G +  ++
Sbjct: 165 IVESFPDALDLLTVCVEAGLGMDAALMRVADEMTLASPEVANELQLMLLELRSGFTKEKA 224

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +         +++  F++++    + G ++  +L  +S  L      + +++A    AK 
Sbjct: 225 LRNFALRTGAEDIDTFASMLVQAERFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 280

Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           +  ++  L FC+   +      P ++++ 
Sbjct: 281 ALKLLFPLIFCIFPALMTVLIGPAFIHIY 309


>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
 gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
          Length = 300

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K     R  ++ D FP+ LD++V SV AGL +  AV  +  +       +    R ++ 
Sbjct: 141 LKSRKATREREYADGFPDLLDLLVASVEAGLSLDAAVTRVTDELERRYPNLTVHLRFLVL 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  ++ S     + +++    +T++    ++G +L + L   S+ +R ++ ++A
Sbjct: 201 ELRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGTSLGDTLQVFSQDMRQKRMLRA 260

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVY 145
           + +AL++ AK +   I+   P  ++ L+ 
Sbjct: 261 EEKALALSAKLTVPLILFIFPSLLTALML 289


>gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis
           E264]
          Length = 314

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 154 LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 214 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 274 EEKAAKLAPKMTLPMMLFVMPTVALI 299


>gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 286

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 3/183 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++R A   + +P+ +D +   VRAGL + +AVA +  +    +R+ FR   E      
Sbjct: 98  RARRRLASTRELWPDVVDHLASGVRAGLSLPEAVAQLGDRGPAELRAPFRAFAEDYRATG 157

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQAL 122
             ++S+  +   +           + +   +GG +L   L  LS  LRD    + +++A 
Sbjct: 158 RFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLRTRGELEAR 217

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                 +A +  + P+ V  ++  T P  +    + P G  +L   AA  +    +M  +
Sbjct: 218 QSWTVYAARMAVAAPWVVLAML-ATRPEAIRA-YDSPAGAAVLLAGAASSVAAYRLMLRV 275

Query: 183 INF 185
              
Sbjct: 276 ARL 278


>gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus
           assembly [Photobacterium damselae subsp. damselae]
 gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Photobacterium damselae subsp. damselae]
          Length = 303

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65
             K     P  LD++   V+ G+ +  +++ +  +       +     R  +   + + L
Sbjct: 154 RHKISGQLPYLLDLLAMCVQTGMTIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGL 212

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++  +   +P  E+  F   I    Q G ++   L  L+  +RD + +  + +   + 
Sbjct: 213 EQALDELYIRVPTNEMRSFVMTIKQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLA 272

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           AK S  +I  +   +  ++   +PG + +L
Sbjct: 273 AKMSIPLILFI--LIPIVILIAAPGVLRML 300


>gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
          Length = 295

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  L ++R A+ + +FP   D++  +V AG     A+  +      P+  E R  +E   
Sbjct: 140 LTRLAERREARMIVEFPAIADMLALAVAAGQGPLGALEHVTTLCRGPLAEELRTALEQAR 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS++++ + R   +  V+ F   + V  + G  L++ L   ++  R+    +   +
Sbjct: 200 AGTPLSDALAGVARRTSVVSVARFVEGVIVALERGTPLADVLRAQAQDARESVRTELVEK 259

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
           A   E    A ++   LP  V   VY
Sbjct: 260 AGRKEVVMMAPVVFLVLPVTVLFAVY 285


>gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 294

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIET 58
           ++  +K +  + L + P  ++ +   + AGLP S AV  +V  S    P+  E   V+  
Sbjct: 139 LEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHDSDPDRPLYKEMNYVLAD 198

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKA 117
              G  + ++     R   + E++ F + I      G G++   L  L++   +++   A
Sbjct: 199 IGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKRKDIA 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           + Q     +K    +   +   ++  +   +P  M
Sbjct: 259 RKQGEEASSKL---VFPMVMVFIAVAIIVLAPAIM 290


>gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
 gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri MJ11]
          Length = 293

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K    K     P  LD++   V  G+ +  +++ +  +       +     R  +
Sbjct: 135 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             ++ + L  ++  +   +P  E+  F   +      G ++ E L  L+  +R  + +  
Sbjct: 195 RANI-VGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   V  L+   +PG M ++  
Sbjct: 254 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGVMRMMTG 291


>gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
 gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 319

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 328

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +  +    +  E      
Sbjct: 170 ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 230 ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMILFFLPVLIAVIL 317


>gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099]
 gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099]
          Length = 305

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +     ++   +   FP+ +D+++    AG+ +  AV  +  + +     +  +   V  
Sbjct: 146 LDRFESRQKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIVTL 205

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L E++  +   + L E    + +     +LG +L++AL   S  +R ++ M A
Sbjct: 206 QLRAGKPLREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRIYSDEMRTQRIMNA 265

Query: 118 KVQALSMEAKASAWIIGSLPFCVS 141
           + +A ++  K     +  L  C+ 
Sbjct: 266 EERANALPVKM----MIPLGLCIF 285


>gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 330

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K++I KR A  +  FP++LD+++  V +G+ +  A+  +  +       +  E   +  
Sbjct: 169 LKNMIDKRRASIMAAFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   M +      +   +T ++     G  L  AL  +++  R+ +   A
Sbjct: 229 ELSYLPDRRMAYEGMAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++ AK +   I+  LP     ++
Sbjct: 289 EKKAAALPAKLTVPMILFFLPVLFVVIL 316


>gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 313

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R    + +FP+  +++  +V AG   + A+  +   S   +  EF  V+     G  
Sbjct: 162 IKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCRSSHGELAREFELVLGETRAGKP 221

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E++ R      L  +  F   I V  + G  L++ L   ++ +RD     AK   +  
Sbjct: 222 LVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVLRAQAQDVRD----TAKRDLMES 277

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150
             K    ++  L F V  L  ++   PG
Sbjct: 278 AGKKEIAMMVPLVFGVLPLTVIFAVFPG 305


>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
 gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1002]
          Length = 322

 Score = 85.1 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +      R    ++DFP+ALD++   V AGL +  ++  +  +    S  V SE   ++ 
Sbjct: 156 LSRRTAARQRSLVEDFPDALDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +++        ++++  FS ++    + G ++  +L  LS  L      + 
Sbjct: 216 EMRSGFSKEKALRNFSLRTGVEDIDSFSAMLIQAERFGTSIGASLRVLSDTL----RTRR 271

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
           +++A    AK +  ++  L FC+    LV    P  +++ 
Sbjct: 272 RMRAEERAAKIALKLLFPLMFCIFPALLVVLMGPAMIHIY 311


>gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 9]
 gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei BCC215]
          Length = 246

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 86  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 145

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 146 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 205

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 206 EEKAAKLAPKMTLPMMLFVMPTVALI 231


>gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp.
           AL-21]
          Length = 310

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 76/184 (41%), Gaps = 10/184 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ L  I   +RAG+ +  A+  I  Q   P+ +E +R +    +G S
Sbjct: 92  MERRVDAIEQTTPDFLRQISSLLRAGVGIETALEDISKQGGGPLNAELKRAVIEIKIGSS 151

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             E++  M   +  + +     +I    ++GG+LS+ +  ++  LR    +K + +A  M
Sbjct: 152 FDEALLSMGERLKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRANVM 211

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLI 174
            +     I   +    +  +      ++  L               G++++      +LI
Sbjct: 212 MSVMFLIISAIIAAPFALGMIMIYSHFIQSLGKVNPLAEVAYTSAAGYLIIHSIIVGVLI 271

Query: 175 GIMV 178
           GI++
Sbjct: 272 GIVL 275


>gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 328

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + + KR A     +P+ALD+++  + +G+ +  A+  +  +    S  +  E      
Sbjct: 170 VSNAMNKRQASIRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++        L  V      +    + G  L++AL  L++  RD +  +A
Sbjct: 230 ELSFLQDRRIALENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   II  LP  ++ ++
Sbjct: 290 EKKAAALPPKLTVPMIIFFLPVLIAVIL 317


>gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
 gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V AG+ +  A   +  +    S     E      
Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei B7210]
 gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 7894]
          Length = 237

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 77  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 136

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 137 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 196

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 197 EEKAAKLAPKMTLPMMLFVMPTVALI 222


>gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 321

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+   KR A+   ++P+ALD+++  V +G+ +  A   +  + ++    +  E      
Sbjct: 163 LKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMANQSIVLAEELALTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L  V    T +    + G  + +AL  L++  RD++  +A
Sbjct: 223 ELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALRVLAQESRDQRMNEA 282

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVIL 310


>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
           sp. Y412MC10]
 gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
           Y412MC10]
          Length = 290

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 1   MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRR 54
           +K L KK   R    + + P  L+ IV  V AG  V  A+   V ++ D   P+ +E +R
Sbjct: 131 VKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKR 190

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113
           ++     G    ++  +  +   +QEVS F+T + +  + GG +   AL +LSR+L +++
Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKR 250

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              A+ +     +K    ++  +   +  +V   +P +M +
Sbjct: 251 KAIARTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
 gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
          Length = 292

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 59/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  + G+   P   E R  ++   +G+S
Sbjct: 134 IRIRRDNIERTLPDFLDVLAVVVSAGLGFRQALERVAGKYEGPWADEIRITLQQMDMGVS 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + E L  ++  +R      A+ +A   
Sbjct: 194 RRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIAIAEDMRRTDAQNARRRAARA 253

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  +   +      L+
Sbjct: 254 VPKATFAVTMFMLPGTLILL 273


>gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 295

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + +Q+GG +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG +  + + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLE-MYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei DM98]
          Length = 249

 Score = 84.7 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 89  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 148

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 149 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 208

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 209 EEKAAKLAPKMTLPMMLFVMPTVALI 234


>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 295

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63
             +R      +  + +D++  SV AGL +  A+  +  +    +  E        +L G 
Sbjct: 138 RNERQEAINRELASVIDLLSISVEAGLTMERAMRHVSERLDGTLCKEIALCERDINLLGY 197

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  +++ R+      + VS F + + V ++ G ++S  L   + + R+R+    + +   
Sbjct: 198 SREDALRRLADRCQTEGVSMFVSSVIVSAKSGSSISRVLKMQASVARNRQFTALEEKVEK 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +  K    I     F + +L+       +  L+    G  L
Sbjct: 258 LPTKM---IFPMSMFIMPSLMLIVMAPAVLTLVESFSGMNL 295


>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 286

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +  +VRAGL + +AVA +  +  D +R  FRR  +   +  + + S+  + R 
Sbjct: 110 WPDVVDNLASAVRAGLALPEAVAQLADRGPDELRPTFRRFADDYRVSGNFAASLDELKRR 169

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  ++GG +L   L  LS  LR+   ++A+++         A +  
Sbjct: 170 LADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLREDLRIRAELETRQGWTVNGARLAV 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             P+ +  L     P  ++   N   G ++L V A+   +    M  +   
Sbjct: 230 LAPWLLLGL-LSLHPAAVHA-YNSAAGVVILTVGASVSAVAYRAMVRIGRL 278


>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 293

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
            L   P  LD +  +V AGL ++ A+   V +  + P+R EF  V+     GL+  E++ 
Sbjct: 146 ILKHLPIYLDFLTLAVEAGLNINGAIQKAVEKGPEGPLRWEFEHVLRDLKSGLNRMEALY 205

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           RM   + ++EV+     +    ++G  LS++L   S   R  +  +A+ QA+    K   
Sbjct: 206 RMDDRLRIKEVTNLVGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVF 265

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      ++ F
Sbjct: 266 PLLVFIFPITFIVLGF 281


>gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5]
          Length = 165

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +  A+  +  +  +    +  E      
Sbjct: 7   ISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTA 66

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     ++  +     ++ V   +  +    + G  +++AL  L++  RD +  +A
Sbjct: 67  ELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEA 126

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  ++ ++
Sbjct: 127 EKKAAALPPKLTVPMILFFLPVLIAVIL 154


>gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 319

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia
           thailandensis Bt4]
          Length = 254

 Score = 84.7 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +   + +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 94  LGFAVARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCAD 153

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 154 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 213

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 214 EEKAAKLAPKMTLPMMLFVMPTVALI 239


>gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 318

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGL +   + V+  +   SS  +  E R    
Sbjct: 158 LKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSSPEMADELRYTAA 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 218 ELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTIADESRKTLLLTL 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  + A+ S  ++  +   +  ++   SP  + V+
Sbjct: 278 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALLRVV 313


>gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 319

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  + A+ S  ++  +   +  ++   SP  + V+
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM--ASPALVRVV 314


>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
 gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
           sp. BAL3]
          Length = 326

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           + + I KR    +  FP+ALD+++  V AG+ +  A+A +  +   SS  +  E   +  
Sbjct: 165 LTNRITKRRTSIMQAFPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V   +  ++     G  LS AL  +++  RD +   A
Sbjct: 225 ELSYLPDRRMAYENLGKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAA 284

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ A+ +   I+  LP     ++    P  +N++
Sbjct: 285 EKKAAALPAQLTVPMILFFLPVLFIVIL---GPAILNIM 320


>gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
 gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS
           2060]
          Length = 319

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K+   KR A+    +P+ALD+++  V +G+ +  +   +  + ++    +  E      
Sbjct: 163 LKNQTTKRQAEIKKHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTA 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   ST +    + G  + +AL  L++  RD++  +A
Sbjct: 223 ELSYLTDRRIAYENLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEA 282

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     ++
Sbjct: 283 EKKAAALPPKLTVPMILFFLPVLFVVIL 310


>gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 324

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 5   IKKRTAKFLDDFPNALDI----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +R  KF+++  + + I    +  S+     V DA+  +       +R E  +      
Sbjct: 138 VHRRKYKFVEN--DRISIYMKTMTNSLHILGTVIDAIEEVKPLVHSSIREELDKATFKLK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S++E++S + +  P +E+ F+  ++ V  + GG  +EAL +++    DRK  + ++ 
Sbjct: 196 QGKSVAEALSSLDKKYPYKELIFYHEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLY 255

Query: 121 ALSMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A + +     + +A I+ +LPF     +    P   ++L+  P G ++  +
Sbjct: 256 AETTQGVKSFRNTASIVIALPFIFKFFM----PQAYSILMRTPLGSIVFVL 302


>gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
           16294]
 gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
           16294]
          Length = 311

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 86/188 (45%), Gaps = 5/188 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59
           ++ +I+ R  KF      A+ ++V+ ++ G+    A++  V  S   + R  F +  + +
Sbjct: 124 LQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQALSKSVSVSGSKLFRDIFEKFFQEK 183

Query: 60  H-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           + +G    E+ S + +++  +E+  F+  I +  + GG  S  L  + + +  R+ M+ K
Sbjct: 184 NTIGEM--EAFSNLNQFVHSKELRIFALAIKIGRESGGQFSNTLEKVEKTINYREKMQEK 241

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM-NVLINDPRGHMLLGVAAAFMLIGIM 177
           V  ++ E    ++++  +   +   +     G + +  +    G   L   + ++  GIM
Sbjct: 242 VDVVTREGSVGSYVVVLITIFLYFALNGNFDGKLHHYFMESQYGRFQLLGISLWVFTGIM 301

Query: 178 VMRLMINF 185
           + +++   
Sbjct: 302 INKMLTKV 309


>gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9]
 gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum SS9]
          Length = 283

 Score = 84.4 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K    K     P  LD++   V+ G+ +  A+  +  +       +    ++  +
Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKTAD 183

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   L +++  +   +P  +V  F+  +    Q G +++  L+ L+  +R  + +  
Sbjct: 184 SARV-KGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTM 242

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 243 EEKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277


>gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 14]
          Length = 253

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 93  LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 152

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 153 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 212

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 213 EEKAAKLAPKMTLPMMLFVMPTVALI 238


>gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062]
 gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062]
          Length = 324

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +++ + KR       +P+A+D+++  V +G+ +  A   +  +       +  E      
Sbjct: 166 VQNKVMKRQESIRLAWPDAMDLMLICVESGMSIEAAFKKVAEEVGPQSTALAEELILANA 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V      +S   + G  +  AL  LS   R  +  +A
Sbjct: 226 ELSYLDERRKAYQNLAERTGLDGVKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEA 285

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   ++  LP     L+
Sbjct: 286 ERKAAALPPKLTVPMMLFFLPVLFIVLI 313


>gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 324

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 157 LTRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++         +++  F  ++    + G +++E+L  LS +L      + 
Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDML----RTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           +++A    AK +  ++  L FC+   +      P  ++V 
Sbjct: 273 RMRAEERAAKIALKLLFPLIFCIFPALMCVLLGPAMIHVY 312


>gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 343

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +   KR    +  FP+ALD+++  V AG+ +  A+  +  +      P+  E   ++ 
Sbjct: 165 ISNTASKRRQSIVAAFPDALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++     +      +    T +    + G  L  AL  +++  R+ +   A
Sbjct: 225 ELSYLPERRQAYEGFSKRTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++ A+ +   I+  LP     ++
Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVIL 312


>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
 gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 307

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 76/188 (40%), Gaps = 10/188 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +  + R     +  P+ L+ I   +  GL    A+  +   S  P+ +E ++++    
Sbjct: 85  ISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELSKTSKGPLNNEIKQLLIETQ 144

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                +ES+  +     L  + +   +I    + GGNL+E L ++S  L++   +K + +
Sbjct: 145 FKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNLAEVLEDISHDLKEIILLKKQRR 204

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN------VLIND----PRGHMLLGVAAA 170
           A  M +     I  ++    +  +      ++        LIN       G++ +     
Sbjct: 205 ASVMMSVMLIIISSTIATPFALGMIGLYSEFIEKIGKNNPLINTIPLASFGYITIQSILV 264

Query: 171 FMLIGIMV 178
             L+G+++
Sbjct: 265 SFLLGVVL 272


>gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 313

 Score = 84.4 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 64/152 (42%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R        P+ L  I   +RAG+ +  A+  +  Q   P+  E +R +    +G 
Sbjct: 91  MMERRVDAIEQSTPDFLRQIASLLRAGVGLESALEDVSRQGEGPLYDELKRAVIEIKIGR 150

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  E+I  M   +  + +     +I    + GG+LS+ +  ++  LR    +K + +A  
Sbjct: 151 TFDEAILSMSERLKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANV 210

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           M +     +   +    +  +     G+M  +
Sbjct: 211 MMSVMFLVVAAIIAAPFALGMIMVYSGFMESV 242


>gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 319

 Score = 84.4 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+   + V+  +   SS  +  E      
Sbjct: 159 LKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    + ++  +     + E+      +    + G  LS+AL  ++   R    +  
Sbjct: 219 ELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGL 278

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   +  ++
Sbjct: 279 EEKAGKLPAQLSVPLMALILPPIIAIM 305


>gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia
           pseudomallei 91]
          Length = 266

 Score = 84.4 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  ++ +R        P+ALD++V    AG  ++ A+  +  +      P+  EF    +
Sbjct: 106 LGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCAD 165

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G   + +++ M   + L  +    T +    Q G  ++++L  LSR  R  + +  
Sbjct: 166 ELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIAL 225

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +A  +  K +  ++  +   V+ +
Sbjct: 226 EEKAAKLAPKMTLPMMLFVMPTVALI 251


>gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
 gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
          Length = 296

 Score = 84.0 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 66/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +    K R A+     P  LD++   V+ G+ +  A+  +  +       +    ++  E
Sbjct: 139 LDSRGKARIARISAQLPYLLDLLAVCVQTGMTIESAMNYLSKEMIGFDKELAGLLKKTNE 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L + + +++  +   +P  E+  F   +    Q G ++   L  L+  +RD + +  
Sbjct: 199 RSRL-VGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLGL 257

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK S  +I  +   +  L+   +PG + ++
Sbjct: 258 EEKIGKLAAKMSVPLILFIMIPIVILI--AAPGILRMM 293


>gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
 gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti
           AK83]
          Length = 321

 Score = 84.0 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +++ I KR       +P ALD+++ +V AG+ +  A   +  +    S     E      
Sbjct: 164 VRNRITKRQQSIRRSWPEALDLLLITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKRAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 295

 Score = 84.0 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +PN +D +V  VRAGL + + +  +  ++   +R  F         G +L  S+  + 
Sbjct: 116 KAWPNLVDDLVSGVRAGLSLGETLLEVAARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + +Q+GG +L   L +L  +LR  +  + +V A        A +
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQSWTVTGARL 235

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + P+ +  L+  + PG +  + + P G M+L V A    +  ++M  +   +V
Sbjct: 236 AAASPWIILALL-LSRPGTLE-VYSTPVGSMILLVGALVSALAYLMMLRLGRLEV 288


>gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 314

 Score = 84.0 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 15/168 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +KKR    L   P+ALD++V  V AG+ +  A+  +  +       + SE R +  
Sbjct: 151 LDSRVKKRQKAILHGLPDALDLLVVCVEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTL 210

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  E++  +   + L+++     ++      G ++++ L   +  +R ++   A
Sbjct: 211 ELRAGKSRREALKNLSNRVGLEDMGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 270

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
           +  A  +  K            +  LV F  P  + V++  P G  L+
Sbjct: 271 EELAAKLPVKL-----------LFPLVLFIFPTLLIVILG-PAGISLM 306


>gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
 gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X561]
          Length = 303

 Score = 84.0 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 117 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 176

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 177 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 235

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 236 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 294

Query: 180 RLM 182
           + +
Sbjct: 295 KRI 297


>gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 313

 Score = 84.0 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+R  + + +FP+  +++  +V AG   + A+  +   +   +  EF  ++     G  
Sbjct: 162 VKRRETRMMAEFPSLAELMALAVSAGESATGALDRVCRSAKGELSREFSNILAETRAGKP 221

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +++        L  +  F   I V  + G  L++ L   ++ +RD     AK   +  
Sbjct: 222 LVQALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRD----TAKRDLMEA 277

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150
             K    ++  L F V  L  V+   PG
Sbjct: 278 AGKKEIAMMVPLVFGVLPLTVVFAVFPG 305


>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
 gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 77/184 (41%), Gaps = 1/184 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + +KR  KF   F  A+  I   ++    + +A+  ++  + +P++ E ++++    
Sbjct: 121 LEKIAQKRYVKFNLQFAEAVQDIADYLKISGNIVNALEKVIDTTENPLKDEIKKIVAKVD 180

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL E++    +      V  +   +    Q+  N ++    +S  +++R     K+ 
Sbjct: 181 AGISLYEALKDFAKESGSPLVEAWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKIS 240

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           +     K++  +I ++   +    Y + P Y         G ++L       ++  + + 
Sbjct: 241 SFMKSTKSTVIMIIAITILLMLSTYTSGPMYAEA-FTTTAGKLVLLYIIISYVVTTVFVF 299

Query: 181 LMIN 184
             I+
Sbjct: 300 RAID 303


>gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 301

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 3/181 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L ++R  K  + F + + ++   ++     + A      +   P++    RV+    LG
Sbjct: 117 YLGRRRIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEVESPLKEHTDRVVRKFELG 176

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             L E++  + + +    +  ++  I    ++  +LS      ++ L +R  M  +V ++
Sbjct: 177 EDLEEALKEL-KSVESTYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASM 235

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMRL 181
           +++AK+    +  +   +       SP ++    + P G +++   A    I  + +++ 
Sbjct: 236 TVQAKSLMVSLAGMMAFMIVSTMSVSPDFVRA-FSTPIGKVVVAYTALSYFISTLYILKR 294

Query: 182 M 182
           +
Sbjct: 295 I 295


>gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
 gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio
           fischeri ES114]
          Length = 303

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K    K     P  LD++   V  G+ +  +++ +  +       +     R  +
Sbjct: 145 LSSRKKALEEKLSGQLPYLLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTND 204

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             ++ + L  ++  +   +P  E+  F   +      G ++ E L  L+  +R  + +  
Sbjct: 205 RANI-VGLEPALDELYVRVPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSL 263

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   V  L+   +PG M ++  
Sbjct: 264 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGVMRMMTG 301


>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 321

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64
           R ++     P+ALD+I  +  AGLP+  ++  +  +     + +  E   +      G S
Sbjct: 146 RVSRIQHALPDALDMITMTTTAGLPLQKSIKRVSDEMVRSHEDLACELMILDRQAETG-S 204

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L ++I    + + + EV+  +++++   ++GG+++ A  + +  +R  +   A+ +    
Sbjct: 205 LGQAIQNFAKRLEVPEVNALASLVTQAQRIGGSVAGAFRDFADSIRRSRRQLAEERGNQN 264

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             K    +I  L   V  L+ 
Sbjct: 265 SIKLLIPVIFLLAPPVYILLL 285


>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 300

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R        P+ LD++   V AGL    A+  +  +   P   E R  +    +G+S
Sbjct: 143 VRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDRVAEKYEGPWADELRITLRQMDMGVS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F + +    +LG  ++E L  L+  +R      A+ +A   
Sbjct: 203 RRQAFDELRRRNTSEQVAQFVSALQQGEELGSPIAETLIQLAADMRRTDAQNARRRAART 262

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+   +  +      L+
Sbjct: 263 IPKATLVTLVFMLPATMILI 282


>gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG
           3301]
          Length = 333

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 63/157 (40%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+    A   +  +    S  +  E      
Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L+ V   +  +    + G  +++AL  LS+  RD + ++A
Sbjct: 229 ELSFLPERRQAYENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K +  +I      +  ++    P ++ +
Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323


>gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 318

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  + G+       V SE + ++     G +  ++
Sbjct: 165 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKA 224

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        ++++  F++++    + G ++  +L  +S  L      + +++A    AK 
Sbjct: 225 LRNFALRTGVEDIDTFASMLVQADRFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 280

Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           +  ++  L FC+   +      P ++++ 
Sbjct: 281 ALKLLFPLIFCIFPALMTVLMGPAFIHIY 309


>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
 gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
           V453]
          Length = 290

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 1   MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRR 54
           +K L KK   R  + + + P  L+ IV  V AG  V  AV   V      + P+ +E +R
Sbjct: 131 VKDLHKKVMLREQEIIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKR 190

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113
           ++     G    ++  +  +   +QEVS F+T + +  + GG +   AL +LSR+L +++
Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKR 250

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               + +     +K    ++  +   +  +V   +P +M +
Sbjct: 251 KAIGRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 326

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P+ALD+++  V +G+ +  A+  +  +    S  +  E      
Sbjct: 168 ISNRITKRQHSIRRAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTA 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V      +    + G  + +AL  L++  RD +   A
Sbjct: 228 ELSFLQDRRTAYENLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAA 287

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP  V+ ++
Sbjct: 288 EKKAAALPPKLTVPMILFFLPVLVAVIL 315


>gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
           HTCC2503]
 gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
           HTCC2503]
          Length = 338

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQ 59
           +L+ KR  K    FP++LD+++  V +G+ +  A+  +  + +     +  E+       
Sbjct: 169 NLVTKRKQKIQLSFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTAEL 228

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                   +   +     L+ V   +T +      G  L  +L  ++   R+ +   A+ 
Sbjct: 229 SYLQDRKVAYHNLGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNAEK 288

Query: 120 QALSMEAKASA-WIIGSLPFCVSTLV 144
           +A ++  K +   I+  LP     ++
Sbjct: 289 KAAALPPKLTVPMILFFLPVLFVVIL 314


>gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 284

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D ++  VRAGLP+ +AVA +  +  + +R EF              + +  +   
Sbjct: 108 WPDVVDHLISGVRAGLPLPEAVAHLGMRGPEQLREEFAIFGREYRATGRFDDCLITLKER 167

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + V   +GG  +   L+ L+  LR    ++ +++A        A +  
Sbjct: 168 LADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQDLRVRGELEARQSWTVGGARVAA 227

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ +  ++    P   +   N   G +L+   A    +   +M  +   
Sbjct: 228 AAPWLILAML-AVRPEAASA-FNTTLGGILIISGAGATALAYTIMIRIGRL 276


>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
 gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 351

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 5/185 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  I   + AG+ +++A+  +      P+  EF  VI     
Sbjct: 165 KMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAKADYGPLSEEFELVIRDMRT 224

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++ +    M  + VS     I    + GGNL+E L  L+        MK     
Sbjct: 225 GSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEILYKLAEDFAFEYRMKLVEYV 284

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMVM 179
             +   +  ++  ++      +V   +   M   ++ + P   ++L V    M     ++
Sbjct: 285 QKVNGISFVYMFMTIVMPTMLVVGILAGSLMARKLIFSVPMIAIMLVVVFPMMS---FMI 341

Query: 180 RLMIN 184
             MI 
Sbjct: 342 INMIK 346


>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 312

 Score = 83.6 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +KKR  + L +FP   +++  S+ AG    DA+  +   ++  +  E R  +    
Sbjct: 157 LTQAVKKREERILAEFPTIAELLALSITAGEGTVDALNRVCHTATGELSDELRIALAQAR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAK 118
            G SL +++  M R   +Q +  F   +++    G  LSE L   +  +R+  R+ +  +
Sbjct: 217 TGTSLVDALDAMARRTNIQSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRKL-ME 275

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
           +            ++  LP  V   VY
Sbjct: 276 LSGKKEVGMLVPVVLFVLPITVLFAVY 302


>gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 314

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  + L +FP   +++  +V AG   + A+  +   S   +  E RR +    
Sbjct: 159 LSRAARRREQRMLAEFPTVAELLALAVSAGEGATGALERVCRLSDGELADELRRCLADAR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L  ++  +     L  +S F   I V  + G  L++ L   ++ +R+        Q
Sbjct: 219 AGANLPTALQGLADRTGLPSLSRFVDGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQ 278

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
               E      ++   LP  V   +Y
Sbjct: 279 GGKREIVMMVPVVFLILPVTVLFAIY 304


>gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
           3_1_45B]
          Length = 303

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K +  +R        P+ALD++V    AGLP +  V V+  +       +  E      
Sbjct: 143 LKSMAARRYTALERSMPDALDLMVICAEAGLPFTRIVKVVSRELELSAPVLAHELTLTNA 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    S ++  +     +  +    + +    Q G  L++AL N++   R    +  
Sbjct: 203 ELEIMPERSAALRNLAERTRVPSIEGMVSTLIQAEQFGTPLAQALHNIAAESRSTLILTL 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  + A+ S  ++  +   V  +V   +P  M V+
Sbjct: 263 EERAGKLPARLSLPLMTLILPPVVAIV--AAPALMRVI 298


>gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 324

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 157 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++         +++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 217 EMRSGFTKETALRNFALRTGTEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +A  +  K            +  L++   P  M VL+     H+   +  +   IG
Sbjct: 277 EERAAKIALKL-----------LFPLIFNIFPALMCVLLGPAMIHVYRVLLPSLASIG 323


>gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
 gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
          Length = 310

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + + +FP   +++  SV AG     A+  I   S   +  EF  ++    
Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL  ++        +  +S F   I+V  + G  L++ L   ++ +RD     AK +
Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDN----AKRE 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTL--VYFTSPG 150
            +    K    ++  + F +  L  ++   PG
Sbjct: 271 LMETAGKKEIAMLAPVVFFILPLTVIFAVFPG 302


>gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 323

 Score = 83.2 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   I  R     +DFP+ALD++   V AGL +  A+  +  +    S+ V  E   ++ 
Sbjct: 156 LSRRIATRQRVIFEDFPDALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVAGELDLLLL 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   ++        ++++  F  ++    + G +++E+L  LS +LR R+ M+A
Sbjct: 216 EMRSGFTKETALRNFALRTGVEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRA 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +A  +  K            +  L++   P  M VL+     H+   +  +F  IG
Sbjct: 276 EERAAKIALKL-----------LFPLIFNIFPALMCVLLGPAMIHVYRVLLPSFASIG 322


>gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 304

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 118 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 177

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 178 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 236

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 237 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 295

Query: 180 RLM 182
           + +
Sbjct: 296 KRI 298


>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 297

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 58/140 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+ R        P+ LD++   V AGL    A+  +  +   P   E R  ++   +G+S
Sbjct: 139 IRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALERVADKYEGPWSDEIRITLQQMTMGVS 198

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   + R    ++V+ F T +    +LG  + E L  L+  +R      A+ +A   
Sbjct: 199 RRQAFDELRRRNDSEQVAQFVTALQQGEELGSPIVETLIALAEDMRRTDAQNARRRAARA 258

Query: 125 EAKASAWIIGSLPFCVSTLV 144
             KA+  +   +      L+
Sbjct: 259 VPKATFAVTTFMLPGTLILL 278


>gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514]
 gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
           X513]
 gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 301

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +L +++  K  + F + + ++   ++     + A      ++ +P++    RV+    
Sbjct: 115 LDYLGRRKIRKTEEQFRDFVKMLGAYLKMVPSFAGAFIKAAEEAENPLKEHTDRVLRRFQ 174

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG  L E++    + +    +  +   I    ++  +LS      ++ L +R  M  ++ 
Sbjct: 175 LGEDLEEALKEF-KNIESTYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIA 233

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVM 179
           A++++AK+    +  +   +       SP ++    + P G +++  AA    I  + ++
Sbjct: 234 AMTVQAKSLMVSLVGIMAFMIVSTVSVSPDFIRT-FSSPIGKLVIAYAALSYFISTLYIL 292

Query: 180 RLM 182
           + +
Sbjct: 293 KRI 295


>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 333

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+ I KR    +  FP+ALD+++  V AG+ +  A+  +  +   +S  +  E   +  
Sbjct: 160 LKNRIAKRQLSIMQAFPDALDLLLICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSA 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + +      V   ST +    Q G  L  AL  +++  RD +   A
Sbjct: 220 ELSYLPERRMAYEGLAKRTNHPGVRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAA 279

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++ A+ +   II  LP     ++
Sbjct: 280 EKKAAALPAQLTVPMIIFFLPVLFVVIL 307


>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
 gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
           sp. HGF5]
          Length = 290

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 1   MKHLIKK---RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRR 54
           +K L KK   R    + + P  L+ IV  V AG  V  A+   V     +S P+ +E +R
Sbjct: 131 VKDLHKKVTLREQDIVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKR 190

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113
           ++     G    ++  +  +   +QEVS F+T + +  + GG +   AL +LSR+L +++
Sbjct: 191 MVLEWEGGHPFQQAFEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKR 250

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
               + +     +K    ++  +   +  +V   +P +M +
Sbjct: 251 KAITRTRGEQASSKL---VLPMVVIFMIVIVLLGAPAFMMM 288


>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 325

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + + + KR       +P+ALD+++  V +G+ +   +  +  + ++    +  E      
Sbjct: 167 ISNRVTKRQKSIKRAWPDALDLMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     ++ V   +  +    + G  +S+AL  +++  RD +  +A
Sbjct: 227 ELSFLQDRRTAFDNLAARTQIEIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEA 286

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +   I+  LP  ++ ++    P  + V+
Sbjct: 287 EKKAAALPPKLTVPMIVFFLPVLMAVIL---GPAIIQVM 322


>gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
 gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
          Length = 283

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLS 66
            K   + P  LDI+   V+ G+ +  +   +  + +     +  + ++  +   +   + 
Sbjct: 132 RKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAAFDSDLSYQIKKTSDAGKI-HGIE 190

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +   +P  EV  F   I    Q G +++  L++L+  +R  + +K + +   + A
Sbjct: 191 KALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILSDLAEDMRRIQLLKVEEKVGKLSA 250

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           K S  +I  + F +  L+   +PG M +   D
Sbjct: 251 KMSVPLILLIMFPIVILI--LAPGVMQLDFTD 280


>gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 297

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 3/166 (1%)

Query: 23  IVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++R + AG   +  AVA  V  + +PVR    R+ E    G     ++      +     
Sbjct: 113 MLRDLMAGAAGLHQAVAATVPIAPEPVREPVARLAERLRAGQPTQGALRAFADEVDNPTA 172

Query: 82  SFFSTVISVQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              +  +S  + +   +L   L +L+   R++  M  +V A     + S  II      +
Sbjct: 173 DLVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRIIVGTTVGM 232

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + L+   +PGY+    +   G ++L          ++ +  M  FD
Sbjct: 233 AALLMAFNPGYLEP-FDGFLGQVVLAGIGGLWAGALVWLSRMSRFD 277


>gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 296

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
            L   P  LD+I    +AGL ++ A+A  V +     +  EF R++     G S  ++++
Sbjct: 149 ILRTLPGYLDMITLCCQAGLSLTGAIAQAVQKGPGGALGQEFDRMMREMRTGASRMDALN 208

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +   +  + +    + ++    LG +L++ L+ +S   R  +   A+  A+    K   
Sbjct: 209 ALADRLDNKHIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIG 268

Query: 131 WIIGSLPFCVSTLVYF 146
            ++  +      +++F
Sbjct: 269 PLVIFIFPVTFIIIFF 284


>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
 gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
          Length = 294

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  A      P+A+D++V SV AGL +  A+  +          +  +F R   
Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLEALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + QA S+  K +   +  +   +  L+ 
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282


>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
 gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 281

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   +       +  +     R+I    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 L-TSLSTALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 281

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   +       +  +     R+I    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 L-TSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 319

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSES 68
            ++ FP+ALD++   V AGL +  A+  + G+       V SE + ++     G +  ++
Sbjct: 166 IVEGFPDALDLLTVCVEAGLGMDAALMRVAGEMQLASPEVASELQLMLLELRSGFTKEKA 225

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        + ++  F++++    + G ++  +L  +S  L      + +++A    AK 
Sbjct: 226 LRNFALRTGVDDIDTFASMLVQADRFGTSIGASLRVMSDTL----RTRRRMRAEERAAKI 281

Query: 129 SAWIIGSLPFCVSTLVY--FTSPGYMNVL 155
           +  ++  L FC+   +      P ++++ 
Sbjct: 282 ALKLLFPLIFCIFPALMTVLMGPAFIHIY 310


>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 292

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+ +   D P+ LD++  +VR+G+    AV  +      P+  E R  I +  LG++  
Sbjct: 142 RRSQQIDRDLPDFLDVLSVTVRSGMSFRPAVERVSSFHEGPLAEEMRGAIYSMRLGVTRR 201

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++          + V+ F +      +LG  L++AL ++S  +R  +  + +  A   + 
Sbjct: 202 DAFIAARDNSRSENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQP 261

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  +   +      L+ 
Sbjct: 262 KIAIVVTTMILPATLILIL 280


>gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 309

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R A+ L + P   +++  +V AG   + A+  +V Q+   +  E  R +    
Sbjct: 154 LGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRGELADELARTLAEAR 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+ ++  +     L  ++ F+  ++V  + G  L++ L   ++ +R+    + +  
Sbjct: 214 AGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVRE----EGRRA 269

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +    +    ++  + F +  +    +
Sbjct: 270 LMQTGGRKEVLMMVPVVFLILPVTVLFA 297


>gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
 gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
          Length = 327

 Score = 82.8 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61
           I KR       +P+ALD+++  V +G+ +  A+  +  + +     +  E          
Sbjct: 173 ISKRQHSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTAELSF 232

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++  +     L+EV      +    + G  +++AL  L++  RD++   A+ +A
Sbjct: 233 LPDRRIALENLGLRSGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAAEKKA 292

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
            ++  K +   I+  LP  V+ ++
Sbjct: 293 AALPPKLTVPMILFFLPVLVAVIL 316


>gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
 gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
          Length = 280

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++   K    K     P  LD++   V+ G+ +  A+  +  + ++    +  + +R  +
Sbjct: 123 LQMRRKMLIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   L ++++ +   +P   V  F   I    Q G ++++ L++L+  +R  + +  
Sbjct: 183 SAKI-QGLEKALTDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTV 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  + F +  L+   +PG M +  N
Sbjct: 242 EEKVGKLSAKMSLPLIIFIMFPIVILI--LAPGIMQMNFN 279


>gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
 gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum
           AIU301]
          Length = 307

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   K+   K      +ALD++V    AGL +  A+  + G+   +   V  EF    +
Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G ++ +S++ +     L  +   ++ +    Q G  L++AL  LS  LR  +  + 
Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +  CV  +V
Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295


>gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 317

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  +V      +  E    +    
Sbjct: 162 LSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVALGRGDLIDELGTTLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+    +  + 
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAEVLRSQATDVRE--AARQDLM 279

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
                 + +  +         T+V+   PG  
Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311


>gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 323

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +  L++ R     +D P+ALD++   V AGL +  A+  +  +    S  ++ E   V+ 
Sbjct: 157 LSRLVEARQRTIFEDLPDALDLMTVCVEAGLGLDAAMQRVAEEIGVKSRALKDELELVLL 216

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +++  +     ++++   ++++    + G ++ ++L    R+  D    + 
Sbjct: 217 ELRAGSARDKALRNLALRTGVEDIDTLTSMLIQADRFGTSVGDSL----RVFIDALRTRR 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNV 154
           +++A    AK +  ++  L FC+    +V    P  M V
Sbjct: 273 RLRAEEQAAKIALKLLFPLMFCIFPTLIVVLIGPAAMRV 311


>gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis
           excentricus CB 48]
 gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis
           excentricus CB 48]
          Length = 326

 Score = 82.4 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           + +   KR A  +  FP+ALD+++  V AG+ +  A+  +  +       +  E   ++ 
Sbjct: 165 ISNAASKRRASIVTAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVA 224

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   + R      +    T +    + G  L  AL  +++  R+ +   A
Sbjct: 225 ELSYLPERRMAYEGLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAA 284

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++ A+ +  +I      +  ++    P  +N++
Sbjct: 285 EKKAAALPAQLTVPMIVFFLPVLFVVI--LGPAILNIM 320


>gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201]
 gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 314

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R    + +FP   +++  +V AG     A+  +   +   +  EFR V+    
Sbjct: 159 LSRSIRRREKLMVAEFPAIAELMALAVGAGESTVGALERVCRVAEGELSGEFRAVLAQTR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR-KNMKAKV 119
            G  L+ ++        +  +  F   I V  + G  L+E L   ++ +RD  K +  +V
Sbjct: 219 AGSGLTTALQDFSARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEV 278

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
                 A     +   LP  V+  V+
Sbjct: 279 AGKKEIAMLVPVVFFILPLSVAFAVF 304


>gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 312

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R  + + +FP+  +++  +V AG   + A+  +   +   +  EF  ++     G  
Sbjct: 161 VRRREERMMAEFPSLAELMALAVGAGESATGALDRVCRSARGELSKEFSTILAETRAGKP 220

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++        L  +  F   I V  + G  L++ L   ++ +RD     AK   +  
Sbjct: 221 LVNALQEFSARTDLAPLVRFVDGIVVAVERGTPLADVLRAQAQDVRD----TAKRDLMEA 276

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPG 150
             K    ++  L F V  L  V+   PG
Sbjct: 277 AGKKEIAMMVPLVFGVLPLTVVFAVFPG 304


>gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5]
          Length = 307

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++   K+   K      +ALD++V    AGL +  A+  + G+   +   V  EF    +
Sbjct: 149 IQQRRKRFIQKVEGGLADALDLMVICADAGLSLESALVRVAGELQLTHPAVAQEFTLTAQ 208

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G ++ +S++ +     L  +   ++ +    Q G  L++AL  LS  LR  +  + 
Sbjct: 209 EMRIGGNIRDSLNALGVRTGLDSLKRLASTLIQTLQYGTPLTQALRTLSSELRQEQLTRF 268

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +  CV  +V
Sbjct: 269 EERAARLPVLLTLPMIIFILPCVFLVV 295


>gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419]
 gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419]
          Length = 321

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + I KR       +P ALD+++ +V +G+ +  A   +  +    S     E      
Sbjct: 164 VSNRITKRQQSIRRSWPEALDLLLITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   + +   ++ V    T +    + G  L +AL  +++  RD +  +A
Sbjct: 224 ELSYLQDRRQAFENLGQRTGVEGVRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEA 283

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +  +I      +  ++   +P  + ++
Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFAVI--ITPAVIQIM 319


>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 294

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  +      P+A+D++V SV AGL +  A+  +    G     +  +F R   
Sbjct: 135 LQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + QA S+  K +   +  +   +  L+ 
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282


>gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus
           DSM 2088]
 gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus
           DSM 2088]
          Length = 339

 Score = 82.1 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R     +  P+ L  +   +RAG+ +  A+  +      P+  E +R      +G S 
Sbjct: 92  ERRRGTIEESTPDFLTQLASELRAGISLESAIDDLTKYGEGPLYDELKRTAIEIKMGRSF 151

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             S+  M   +  ++++    +IS   + G +LS  L +++  LR    +K + ++  M 
Sbjct: 152 ESSLIAMANRLKSEQLNRTFRMISEGRRAGASLSRVLESVAEDLRQVLALKRERKSNVMM 211

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                 I G +   +   +      +   L +        G  A   L+G  V + ++N 
Sbjct: 212 YAMFFLIAGLIGAPLVVGLISIVIRFFIDLYSAS------GAIAGMTLVGN-VQQRLVNL 264

Query: 186 D 186
            
Sbjct: 265 R 265


>gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
 gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
          Length = 310

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 2/151 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     +R  + L +FP   +++  +V AG     A+  +   S   +  E RR +    
Sbjct: 155 LSRRANQREERMLAEFPTVAELLALAVGAGEGAVGALERVCRLSRGELSDELRRCLGDAR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +     L  ++ F   I +  + G  L++ L   ++ +R+    +  + 
Sbjct: 215 AGASLPVALHGLADRTGLMSLTRFVDGIVIAVERGTPLADVLRAQAQDVRE--EGRRAIM 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
               + + +  I         T+++   PG+
Sbjct: 273 EAGGKKEIAMMIPVVFLVLPITVLFAIFPGF 303


>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 292

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQ 59
           +   IK R    +   PN LD+++ SV +G  +  A+  ++  +  DP+  E  R     
Sbjct: 133 LSMRIKARHLSIMKALPNVLDLLMLSVESGRDIVSALRDILARRRMDPLGEELTRAFRQM 192

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG   ++++  M + +   +++     I    +LG ++ + L     + R+++   A+ 
Sbjct: 193 QLGRKRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNKRFSLAEK 252

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
            A     K    ++  +   V  +++
Sbjct: 253 LANEAAVKIIFPVVFCILPSVLIVIF 278


>gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 286

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +P+ +D +   VRAG+ + +A+A +  +  + +R  F               S+  + 
Sbjct: 108 DAWPDCVDHVASGVRAGMALPEALAQLAVRGPEELRPAFAGFAHDYRATGRFHVSLDALK 167

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  ++GG +L   L  LS  LR+  + +++++A       +A +
Sbjct: 168 ERLSDPVADRLVESLRIAREVGGSDLGVVLRTLSSFLREEAHTRSEMEARQSWTVNAARL 227

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  ++            N   G ++L +     +   ++M  +   
Sbjct: 228 GLAAPWIVLAMLATRGDSL--AAYNSTTGALVLVLGGLVSVGAYLLMMRLGRI 278


>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
 gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
          Length = 290

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  +IK +  + + D P  +D++  +V+ G+ +  A   +     + +  +     R+I 
Sbjct: 132 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 191

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  
Sbjct: 192 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 250

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 251 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 286


>gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens
           TC1]
 gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter
           aurescens TC1]
          Length = 313

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   IK+R ++ L +FP+  +++  +V AG     A+  +   S+  + +EF  ++    
Sbjct: 158 LGLRIKRRESRMLSEFPSLAELMALAVAAGESAMGAMDRVSRSSNGELSAEFATILADTR 217

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+E++        L  +  F   + V  + G  L++ L   +  +RD     AK  
Sbjct: 218 SGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTPLADVLRAQAADVRD----AAKRD 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
            +    +    ++  L F V  L
Sbjct: 274 LMESAGRKEIAMMVPLVFGVLPL 296


>gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio
           parahaemolyticus 16]
 gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio
           parahaemolyticus 16]
          Length = 248

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLG 62
           K R ++     P  LD++   V+ G+ +  A+  +  +       +    ++  +   L 
Sbjct: 96  KARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVGFDKELAGLLKKTNDRARL- 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + + +++  +   +P  E+  F   +    Q G ++   L  L+  +RD + +  + +  
Sbjct: 155 VGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTTLAGDIRDVQMLTLEEKIG 214

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            + AK S  +I  +   +  L+   +PG + ++
Sbjct: 215 KLAAKMSVPLILFIMMPIVILI--AAPGILRMM 245


>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 294

 Score = 82.1 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++   +K  A      P+A+D++V SV AGL +  A+  +    G     +  +F R   
Sbjct: 135 LQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLRTHA 194

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    +  ++R+     L E+   +  + +  Q G  L+E +  +S+  R  + +  
Sbjct: 195 EIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRRLAL 254

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           + QA S+  K +   +  +   +  L+ 
Sbjct: 255 EEQAGSLPGKITLIQMALIMLPMLVLII 282


>gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 281

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K    K     P  LD++   V+ G+ V  A+A +  +       +    ++  +
Sbjct: 125 LAMRKKMLVKKTSRQLPYMLDMMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKTAD 184

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           T  +   L +++  +   +P  EV  FS  +    Q G +++  LA+L+  +R  + +  
Sbjct: 185 TSRI-TGLEKALLELSERIPTPEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAM 243

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  +I  + F +  L+   +PG+M +
Sbjct: 244 EESIGKLAAKMSVPLILFIMFPIVVLI--LAPGFMQL 278


>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
          Length = 281

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  + ++D P  +D++  +V+ G+ +  A   +       +  +     R++    
Sbjct: 126 ILKSKIKRIMNDIPGFIDLVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAE 185

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L  SLS ++  M   +P +E+  F TV+      G +L E L  LS  +R+ + +  + +
Sbjct: 186 L-TSLSAALQDMAISLPTKEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEK 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 245 LGTLSAKMSIPLILFIMFPIIILI--VAPGAMRVL 277


>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
          Length = 281

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  +IK +  + + D P  +D++  +V+ G+ +  A   +     + +  +     R+I 
Sbjct: 123 VNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSMDFERLNPDLTYVLLRIIR 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  SL+ ++  +   +P +E+  F TV+      G ++ + L  LS  +RD + +  
Sbjct: 183 RAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVYDNLTMLSADIRDMQLLVM 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M VL
Sbjct: 242 EEKLGTLAAKMSVPLILFVMFPIIILI--VAPGAMRVL 277


>gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum 3TCK]
 gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
           profundum 3TCK]
          Length = 283

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K    K     P  LD++   V+ G+ +  A+  +  +       +    ++  +
Sbjct: 124 LSMRKKALILKTSRQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKTAD 183

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L +++  +   +P  +V  F+  +    Q G +++  L+ L+  +R  + +  
Sbjct: 184 GARV-KGLEKALIELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTM 242

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 243 EEKIGKLAAKMSVPLILLIMFPIVILI--LAPGMMQM 277


>gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
 gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 316

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K     R  K     P+ALD++V    AGLP+      +  +   SS  +  E      
Sbjct: 156 LKMRAASRGGKLSSSLPDALDLMVICAEAGLPLGRIFKTVSKELAFSSPELAEEIGYTHA 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +    S+++  +     +  V+   + +    + G  LS+AL  +S   R    ++ 
Sbjct: 216 ELQILSDRSKALMNLADRCGVDNVAAMVSTLIQAERYGTPLSQALRTISVESRKNMVLEL 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  + A+ S  ++  +   V  ++
Sbjct: 276 EEKAGKLPAQLSVPLMVFILPPVIAMM 302


>gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
 gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
          Length = 310

 Score = 81.7 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR  + + +FP   +++  SV AG     A+  I   S   +  EF  ++    
Sbjct: 155 LGEAVTKREKQLVAEFPALAEMMALSVTAGESALAALERICLTSRGELAREFSEILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL  ++        +  +S F   I+V  + G  L++ L   ++ +RD     AK +
Sbjct: 215 TGVSLLSALQEFAERTRVPALSRFVEGIAVAIERGTPLADVLRAQAQDVRDN----AKRE 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTL--VYFTSPG 150
            +    K    ++  + F +  L  ++   PG
Sbjct: 271 LMETAGKKEIAMLAPVVFFILPLTVIFAVFPG 302


>gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 286

 Score = 81.7 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
              + R     + +P+ +D +  +VRAG+ + + +A +  +   P+R  F R  E     
Sbjct: 96  RRRRTRMHDLRELWPDVVDNLASAVRAGMSLPEGLASVGVRGPVPLRPAFTRFGEDYRAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
            S S S+ R+   +           + +  ++GG +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSASLDRLADDLADPIADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +    P+ V  ++   + G      + P G ++L       ++  M+M+ 
Sbjct: 216 RQSWTVNAARLALGAPWVVLLML--ATRGETVRAYDSPTGVVVLVTGGGVSVLAYMIMKW 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
          Length = 333

 Score = 81.7 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + +   KR       +P+ALD+++  V +G+    A   +  +    S  +  E      
Sbjct: 169 VSNRATKRKQSIRRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V   +  +    + G  +S+AL  LS+  RD + + A
Sbjct: 229 ELSFLPERRQAYENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A ++  K +  +I      +  ++    P ++ +
Sbjct: 289 EKKAAALPPKLTVPMIVFFLPVLFIVI--LGPAFIQI 323


>gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 291

 Score = 81.7 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 2/156 (1%)

Query: 32  PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
            +  A+      S+  +R     +++   +   L +++ R    +           + + 
Sbjct: 123 GLEQAIPATAATSAPVLRPSLNLLVDRLRVREPLPDALLRFADDVDDPSADVVVAALVLN 182

Query: 92  SQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
           ++L G  L + L  L+   R+  +++ +++A     + S  I+  +   V  ++   +  
Sbjct: 183 ARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQIVLLIVLGVMGVLSVFNRS 242

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           Y+    +   G + L V A  +++G+  +R +   +
Sbjct: 243 YVAP-YSTFSGQVALIVVAGLLVLGLTWLRRLARVE 277


>gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 301

 Score = 81.7 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 56/134 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+R  +   D P+ +D++  +V AG+    A+  +  +   P+  E +  ++    G S
Sbjct: 143 VKRRKEQIDQDLPSFMDVLAVTVTAGIGFRRALRTVSERYGGPLADEIQLTLQHVDNGAS 202

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ++ + +        V  F +      +LG  L + L +++  +R      A  +A  +
Sbjct: 203 MRQAFTALRDRTGSAAVDEFVSAYVQSEELGAPLVDTLNHIAADMRRSSAQAALQRASRI 262

Query: 125 EAKASAWIIGSLPF 138
           E + S      +  
Sbjct: 263 EPRVSLVTTTVMVP 276


>gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 269

 Score = 81.3 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R A      P+    +  ++ AG  +  A+         P+  E  RV+    
Sbjct: 111 LNSRVARRKALIRRQLPDFSVFLATALTAGADLPTALREAGTHVGGPIGEEVERVLLEFG 170

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG +L  ++  M     + E+             G +++E +   +    DR+    + +
Sbjct: 171 LGRNLVSALEDMADRCDMDELRLLLWSAGRAYAYGTSVAEEVRAQA----DRQRSMRRFE 226

Query: 121 ALSMEAKASAWIIGSLPFCVS--TLVYFTSPGYMNVL 155
            +    K + ++I  + F +    +V    P  + + 
Sbjct: 227 VMEAAGKLAIYLIFPILFFMLLPLMVVVMYPAAVALY 263


>gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 312

 Score = 81.3 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + + +FP   +++  +V AG     A+  +   +   +  E RR +    
Sbjct: 157 LTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVAATARGELSVEIRRTLADVR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  ++ +++ M     L  ++ F+  ++V  + G  L+E L   ++ +R+      +  
Sbjct: 217 AGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAEVLRAQAQDVRES----GRRA 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
            +    +    ++  + F +  +    +
Sbjct: 273 LMEAGGRKEVVMLVPVVFLILPITVVFA 300


>gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 281

 Score = 81.3 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 15/174 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   +K R        P+ALD++V  V AG+ +  A+  +  +       + +E R +  
Sbjct: 118 LDSRVKARQTAIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRLLTL 177

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  E++  +   + L++V     ++      G ++++ L   +  +R ++   A
Sbjct: 178 ELRAGKARREALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLA 237

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           +  A  +  K            +  L++F  P  + V++  P G  +  +    
Sbjct: 238 EELAAKLPVKL-----------LMPLIFFIFPTLLIVILG-PAGIRIFQMFGGM 279


>gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 311

 Score = 81.3 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R+ + L +FP   +++  +V AG   + A+  +V      +  EF R +    
Sbjct: 156 LSREAQRRSRRMLAEFPTVAELLALAVGAGESPAAALERVVRVCRGELSVEFARALSEAR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +    PL  +S F   + V  Q G  L++ L   +  +R+     AK  
Sbjct: 216 TGGSLVTALENLAARNPLDIMSRFVDGMIVAMQRGTPLADVLRAQASDVRE----AAKRS 271

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L +  +    ++  + F +    L++   P ++++
Sbjct: 272 LLDIGGRKEIGMMVPVVFLILPITLLFALFPSFVSL 307


>gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens
           AM1]
 gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4]
 gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1]
 gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum
           CM4]
 gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
 gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 323

 Score = 81.3 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + ++  KR A+    +P+ALD+ +  V +G+ V +A   +  + +     +  E   +  
Sbjct: 164 LSNITSKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEVASQSAVLAEELALLTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +T +    + G  + +AL  L++  RD +  +A
Sbjct: 224 ELSFLPERRVAYENLALRTGLEIVKSLTTALMQAERYGTPVGQALRVLAQESRDYRMTEA 283

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A S+  K +   I+  LP     L+
Sbjct: 284 EKKAASLPPKLTVPMILFFLPVLFVVLL 311


>gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 340

 Score = 80.9 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +   KR       +P+ LD+++  V +G+ V  A+  +  +       +  EF     
Sbjct: 169 VNNRATKRKQSIQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +     L  V   S  +    + G  ++ AL  L+   RD +   A
Sbjct: 229 ELSYLPERKQAYENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAA 288

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP   + ++
Sbjct: 289 EKKAAALPPKLTVPMILFFLPVLFAIIL 316


>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 291

 Score = 80.9 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           +   +++R    L + P  L+ IV  V AG  V  A+ + + +  +    P+  E  ++ 
Sbjct: 134 LHRKVQRREQAVLLELPELLNKIVLLVGAGSTVQQAMKLCLERKREQIGHPLYRELLQMQ 193

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115
           +    G S  +++    +   +QEVS F+T + +  + GG   + AL +LS  L +++  
Sbjct: 194 KEWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNYRRGGEDFALALRDLSHSLWEKRKA 253

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             +       +K    +   +   ++ L+   +P +M
Sbjct: 254 VGRTLGEQASSKL---VFPMVLLFMAVLILVGAPAFM 287


>gi|289769864|ref|ZP_06529242.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289700063|gb|EFD67492.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 330

 Score = 80.9 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L +++  + 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 227 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 279


>gi|21222912|ref|NP_628691.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|7242744|emb|CAB77318.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 345

 Score = 80.9 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L +++  + 
Sbjct: 122 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 181

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 182 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 241

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 242 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 294


>gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 260

 Score = 80.9 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 7/173 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV----RSEFRRVIETQHLGLSLSESI 69
           +     L  ++  ++AG P+  A      + + PV    + EF   +     GL L E++
Sbjct: 81  EALEGLLVTVIAHLQAGRPLRQAWIEAAREVAAPVLEPAKGEF---LAALGAGLPLEEAL 137

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                   L+ +     V S   + GG+++     + + LR+++   A+V A + EA+ S
Sbjct: 138 GLWHGQTGLRALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAARTAEARLS 197

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           A ++  LP  V+       P ++  L  DP G   L  A    L G+ ++R +
Sbjct: 198 ARLLALLPVAVAAYALAMDPAFLGPLWEDPLGRGGLLYAVVSWLAGLYLLRRL 250


>gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio
           harveyi HY01]
 gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
 gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio
           harveyi HY01]
 gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
          Length = 280

 Score = 80.9 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++   K    K     P  LD++   V+ G+ +  A+  +  + ++    +  + +R  +
Sbjct: 123 LQMRRKILIRKTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   L ++++ +   +P   +  F   I    Q G ++++ L++L+  +R  + +  
Sbjct: 183 SAKI-HGLEKALNDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILTV 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  + F +  L+   +PG M + +N
Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPGIMQMTLN 279


>gi|256785972|ref|ZP_05524403.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 347

 Score = 80.5 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L +++  + 
Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPDALQHLA 183

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 184 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 243

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G ++L        +G   +R +   +
Sbjct: 244 VVAVSVLFVLGLSIFNRDFVEP-YGSPVGQLVLVCVCGLFALGFWWLRKLSTIE 296


>gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 316

 Score = 80.5 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESI 69
              FP+ +D+++    AG+ +  AV  +  + +     +  +   +      G  L E++
Sbjct: 169 RRAFPDFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNLQLRAGKPLREAL 228

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             +   + L E    + +     +LG +L++AL   S  +R ++ + A+ +A S+  K  
Sbjct: 229 RELADRIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSAEERANSLPVKMM 288

Query: 130 AWI-IGSLPFCVSTLVY 145
             + +   P  +  ++ 
Sbjct: 289 IPLGLCIFPVVMMVIML 305


>gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 178

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 4/155 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +     P+A +++  +V AG  V  A+  +   S   +  E  R +    
Sbjct: 23  LTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVASLSHSDLGDELARAVADIR 82

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG     +++ +        +S     +S     G  L+  L + +R +R+    +   +
Sbjct: 83  LGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLAAVLHDQARDIREASRQRLMEE 142

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYMNV 154
               E      ++   LP  V   +Y   PG M +
Sbjct: 143 GGKREIAMLFPVVFLILPVTVLFALY---PGLMAL 174


>gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
 gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio
           salmonicida LFI1238]
          Length = 292

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +   IK    K     P  LD++   V  G+ +  ++A +  +       +     R  +
Sbjct: 134 LNSRIKTLRDKLSSQLPYLLDLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTND 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + LS ++  +   +P  E+  F   +      G ++   L  L+  +R+ + +  
Sbjct: 194 RARI-VGLSVALDELYIKVPTNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSL 252

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK S  +I  +   V  L+   +PG M ++
Sbjct: 253 EEKVGKLAAKMSVPLILFIMIPVVILI--AAPGIMRMM 288


>gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 280

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSE 67
           K     P  LD++   ++ G+ +  ++  +  +  +    +  + +R  ++  +   L +
Sbjct: 133 KISAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRTSDSAKI-HGLEK 191

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++     +P   V  F   I    Q G ++++ L +LS  +R  + +  + +   + AK
Sbjct: 192 ALNDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAK 251

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            S  +I  + F +  L+   +PG M ++IN
Sbjct: 252 MSLPLILLIMFPIVVLI--LAPGIMQMMIN 279


>gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1]
          Length = 329

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 4/144 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHL 61
             KR       +P+ALD+++  V +G+ V  A   +  +       +  E          
Sbjct: 173 ASKRKKSIQLAWPDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTAELSF 232

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                ++   +     L+ V   S  +    + G  +S+AL  L+   R+ +   A+ +A
Sbjct: 233 LQERRQAYENLAARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAAEKKA 292

Query: 122 LSMEAKASA-WIIGSLPFCVSTLV 144
            ++  K +   I+  LP   + ++
Sbjct: 293 AALPPKLTVPMILFFLPVLFAIIL 316


>gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 236

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +  L +KR      D P   D++   V AGL V  A+           +R    + +   
Sbjct: 79  LHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQSGPKGALRDALAQALAEM 138

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++  ++I  +           ++  ++    LG +L   L   +   R  ++++A+ 
Sbjct: 139 RAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQAAQCRSDRHVRAEQ 198

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
           QA+    K    +IG +  C   ++ F
Sbjct: 199 QAMQAPVKMLLPLIGCIFPCTFIVLAF 225


>gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
 gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
          Length = 282

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 3   HLIKKRTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRV 55
            L++ R    +       P  LD++   V+ G+ +  A+  +  + ++    +  + +R 
Sbjct: 121 MLLQLRRKVLIGKTSAQLPYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRT 180

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            ++  +   L ++++ +   +P   V  F   I    Q G ++++ L++L+  +R  + +
Sbjct: 181 SDSAKI-HGLEKALNDLSDRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQIL 239

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + +   + AK S  +I  + F +  L+   +PG M +
Sbjct: 240 AVEEKVGKLSAKMSIPLILFIMFPIVILI--LAPGIMQM 276


>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 319

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +L+ KR       +P+ALD+++  + +G+ V  A+  +  +       +  E      
Sbjct: 159 ISNLVTKRQDSIRRAWPDALDLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTA 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L+   +         +  +           + G ++ ++L  L    R  + M+A
Sbjct: 219 ELSFLLNRQVAFENFYNRTQMDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEA 278

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +   I+  LP  +  ++    P  +N++
Sbjct: 279 EKKAAALSPKLTVPMILFFLPVLMLVII---GPAILNIM 314


>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
 gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 292

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIET 58
             ++K++    + D P  +D++   V+ G+ ++ A+  +       +  +     R+I  
Sbjct: 136 NMILKRKIKNMMTDLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRK 195

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             + + L  ++  +   +P +E+  F+TV+      G ++   L  LS  +R+ + +  +
Sbjct: 196 AEI-IGLPSALDTLAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIE 254

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            Q  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 255 EQLGTLSAKMSVPLILFIMFPIIILI--VAPGVMRVF 289


>gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001]
 gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001]
          Length = 323

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + ++  KR A+    +P+ALD+ +  V +G+ V +A   +  + +     +  E   +  
Sbjct: 164 LSNMTTKRQAEIRRAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTA 223

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +     L+ V   +T +    + G  + +AL  L++  RD +  +A
Sbjct: 224 ELSFLPERRVAYENLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEA 283

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLV 144
           + +A ++  K +   I+  LP     L+
Sbjct: 284 EKKAAALPPKLTVPMILFFLPVLFVVLL 311


>gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 325

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           + +  KKR  +    +P+ALD+ +  V +G+ + +A   +  + +     +  E   +  
Sbjct: 167 LVNTAKKRQTEIRKAWPDALDLTLICVESGMAIENAFRKVSTEIATSSVVLAEELALMTA 226

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++   +V    L+ V   +T +    + G  + +AL  LS+  RD +  +A
Sbjct: 227 EMSFLPDRRQAYENLVMRTGLEPVKSVATALIQAERYGTPVGQALRVLSQESRDMRMNEA 286

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +A  +  K +  +I      +  ++   +P  + ++  
Sbjct: 287 EKKAAGLPPKLTVPMILFFLPVLFVVI--ITPAVIQIMRT 324


>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 288

 Score = 80.1 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           +   +KK+    L + P  L+ I+  V AG  V  +    +   ++    P+++E  +  
Sbjct: 132 LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 191

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
               + +SL++S+  + R   +QE+S F+T + +  + GG +L+ AL NLS+ L +R+  
Sbjct: 192 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 251

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +++      +K    +       +  +V   +P  M +
Sbjct: 252 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 287


>gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243]
          Length = 288

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 4/146 (2%)

Query: 3   HLIKKR---TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            L+ +R     +     P+ALD++   + AG     A+A +  +    +   F RV +  
Sbjct: 133 WLLARRAEWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIAEAFARVAKEA 192

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               S SE++  +     +  ++FF+  +    + G +L + +   ++ +R  + ++   
Sbjct: 193 AY-SSRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTERRLRVDD 251

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
               +  K    ++  +   +  L+ 
Sbjct: 252 MTNKLSTKMLFPMLLLMLPSIIMLML 277


>gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
 gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
          Length = 339

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + ++KR       FP+ALD+IV  V AGL V  A+  +  +    +  +  E      
Sbjct: 180 LTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTEEMMISAPEMAEEIGLTAA 239

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +         L +V   +T +    + G  +++AL  +S+  R+ +   A
Sbjct: 240 ELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVAQALKVISQENREGRMAAA 299

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A ++ AK +  +I      +  ++
Sbjct: 300 EKKAAALPAKLTVPMIVFFLPVLFLII 326


>gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 286

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P  +D +   +RAGL + +A+A I  +    +R  F    E         E +  +   
Sbjct: 110 WPEVVDHLASGIRAGLALPEALAQIGERGPVELREPFVAFAEDYRATGRFGECLDLLKAR 169

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +   +GG +L   L  LS  LR+    + +++A       +A +  
Sbjct: 170 LADPVADRIVEALRMTRDVGGTDLGRLLRTLSTFLREDLRTRGELEARQSWTVNAARLAA 229

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  L+   S        +   G ++L   AA  ++   +M  +   
Sbjct: 230 AAPWLVLGLLATRSEA--AAAYDSTAGLLVLAAGAASTVVAYALMLRIARL 278


>gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 312

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 5/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           L   R  +  +    A+ I+   + +G  V  A+ ++     +    +  E    +    
Sbjct: 152 LASARQMRIGEQVTTAVQILRMLLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRAR 211

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L E +  + R + + E+     ++    + GGN+ E L  L+ ++ DR+  + + +
Sbjct: 212 SGEGLVEVLDGLARDLEVPELDDTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEK 271

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              M AK S  ++  L    + LV   +PG ++++
Sbjct: 272 VTKMSAKMSVVMMLFL--FPALLVVLAAPGLISLV 304


>gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01]
 gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01]
          Length = 283

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 3/149 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +   +     P+A+D++V  V +GL +      +  +    S  +  E+     
Sbjct: 122 LDWRVNQVRMQISRVIPDAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTAT 181

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S   ++S + + + L +++   T ++   Q G  L+EAL  ++   R    ++ 
Sbjct: 182 EISVLDSPQTALSNLDKRVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLEL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +     + AK S  ++  +   V  ++  
Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVGIIVV 270


>gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
           MCE9]
 gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
           MCE9]
          Length = 267

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +K  I KR  +  + FP  LD++  S+ +G   + ++           ++ E    I   
Sbjct: 111 IKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYAFNSLPNGVLKDELGFTIREM 170

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G    E+I  M +   L  V  +   I    QLG  L+ A    +  +R ++ + A+ 
Sbjct: 171 QAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQLASAFRAQASYIRKQRYLMAEK 230

Query: 120 QALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVL 155
            A     K     +  L F +     +    P +M +L
Sbjct: 231 LAFEAPVKM----LFPLVFFIFPCTFIVLLFPVFMQIL 264


>gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
 gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
          Length = 305

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHL 61
            K+R  + +    +A+D++V S+ AGL +  A+  +          +  +F R      +
Sbjct: 153 AKQRQQQIVA---DAMDLMVISIEAGLSLDRALERVGHYLLDVEPMLAKQFLRTHAEIQV 209

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               +  + ++     LQE+   +  +++  + G  L+E + N+S+  R  + M  + QA
Sbjct: 210 LGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPLAETMRNISQDARQMRKMALQEQA 269

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
             +  + +   +  +   +  L+ 
Sbjct: 270 GKLPGRITLIQMAFIMLPLLVLII 293


>gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
           12B01]
 gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
           12B01]
          Length = 280

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++   K   ++     P  LD++   V+ G+ +  A+  +  + ++    +  + +R  +
Sbjct: 123 LQMRRKMLISRTSAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSD 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   L ++++ +   +P   V  F   I    Q G +++  L++L+  +R  + +  
Sbjct: 183 SAKI-HGLEKALNDLSERIPTPPVRSFVLTIIQNLQYGTSVASVLSDLAEDMRKVQILTV 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  + F +  L+   +P  M + +N
Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPSIMQMTLN 279


>gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 359

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 73/179 (40%), Gaps = 4/179 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+++   + P AL  +   +++GL + D++  +       +  EF R +E    G +  
Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M   +    +      I+     GG+LS+ L  ++  +     MK K  +  + +
Sbjct: 238 NALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297

Query: 127 -KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
                  +  L   +  ++   +   M  ++  P   +++ +    ML+G    +++ +
Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAAATVMGSVL-PPIAIIMIYLFLFPMLVGFMAFMIKRL 355


>gi|291452023|ref|ZP_06591413.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354972|gb|EFE81874.1| integral membrane protein [Streptomyces albus J1074]
          Length = 289

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L E++  + 
Sbjct: 75  EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 134

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 135 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 194

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 195 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 247


>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
 gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
          Length = 325

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 17/186 (9%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     ++ P+AL  +V  +RAGL + + +  +       +  EFR V+     G +  E
Sbjct: 102 RIKDIEENLPDALRQMVEELRAGLSIFETIRNVAESDYGELSREFRIVVRDMDTGKTFEE 161

Query: 68  SISRMVRYMPLQEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME- 125
           +I  M   +  + +       + +    GG L++ L  +   +R+ + ++ + +A++   
Sbjct: 162 AILDMAERVNSELLTRAVRLTVRISM-SGGALADVLEAVENDIREVRRIELERKAITTMP 220

Query: 126 --AKASAWIIGSLPFCV-------STLVYFTSPGY-MNVLI---NDPRGHMLLGVAAAF- 171
             A A   +I  LP  V         ++    P Y M  +     DP     L +     
Sbjct: 221 CLALALGGLISGLPVGVSIGAVIGVAMMERMGPTYAMLPMYLQAKDPLASYPLVLGLLSG 280

Query: 172 MLIGIM 177
           M IGI+
Sbjct: 281 MAIGII 286


>gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 317

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R ++     P+ ++++  +V AG     A+  +V      +  E    +    
Sbjct: 162 LSRAVARRLSRIEAQLPDIVELLALAVGAGQGPVPAIERVVALGRGDLIDELGATLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L++ L + +  +R+    +  + 
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLADVLRSQATDVRE--AARQDLM 279

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
                 + +  +         T+V+   PG  
Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311


>gi|239980169|ref|ZP_04702693.1| integral membrane protein [Streptomyces albus J1074]
          Length = 338

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L E++  + 
Sbjct: 124 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQHLA 183

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 184 DEIDDASADIIVAALMLNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRSSTRRSVQI 243

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 244 VVAVSVAFVLGLAVFNRDFVAP-YGTPVGQAVLACVCGLFALGFWWLRKLSTIE 296


>gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus
           DSM 2088]
 gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus
           DSM 2088]
          Length = 355

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 1/149 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +   + P AL  +   +RAGL   DA+  +       +  EF R +E    G S + 
Sbjct: 174 RADEISRELPYALRQMATELRAGLGFHDAMKSVATSGYGALSEEFARTLEEIKYGESTTR 233

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +P   +      I    + GG++++AL  ++  +     MK +  +  + + 
Sbjct: 234 ALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNSF 293

Query: 128 ASAW-IIGSLPFCVSTLVYFTSPGYMNVL 155
              +  IG +   V  ++   +  +M  +
Sbjct: 294 MMIYMFIGIVGPAVLPILLIIATIFMPTM 322


>gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 283

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 166

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                       + +  ++GG +L   L +LS++LR+    + +++A        A +  
Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  L+  T P             +LL  A    +I   +M  +   
Sbjct: 227 AAPWLVLALLS-TRPQAAAAYATTAGAVILLVGAVVS-VIAYRLMLRLGRL 275


>gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto
           TadC [Moritella sp. PE36]
 gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto
           TadC [Moritella sp. PE36]
          Length = 296

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +    K+ T K  +  P  LD++   V+ G+ +  A++ +  + ++    + +   +  +
Sbjct: 139 LNLRAKQLTEKISNKLPYLLDLMAVCVQTGMTLESAISYLSKEMTEFDKDLTNVLVKTND 198

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              + + L+ ++  +   +P  E+  F   +    Q G ++S+ L  LS  +R  + +  
Sbjct: 199 RARI-VGLAMALDELYLRVPSNEMRSFVMTLKQSLQFGSSISQVLTTLSGDIRQVQILGL 257

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  +I  +   V  L+   +PG M ++IN
Sbjct: 258 EEKIGKLAAKMSIPLIVFIMVPVVILI--AAPGIMRMMIN 295


>gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein
           [Actinomyces viscosus C505]
 gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein
           [Actinomyces viscosus C505]
          Length = 317

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  IV      +  E    +    
Sbjct: 162 LSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 221

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+    +  + 
Sbjct: 222 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQATDVRE--AARQDLM 279

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
                 + +  +         T+V+   PG  
Sbjct: 280 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 311


>gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 284

 Score = 79.4 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 2/156 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +KR       +P+ +D +  ++RAGL + +A+  +     + +R  F        
Sbjct: 93  VRWRARKRRNSLRQLWPDIVDHLRSAIRAGLALPEALIQLGHNGPEELRELFLDFGADYR 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              +   +  ++   +           + +  ++GG +L   L  LS  LRD    ++++
Sbjct: 153 AAGNFEAAADKLKERLADPVADRIIEALRMTREVGGSDLGRMLGTLSGFLRDSARTRSEL 212

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +A       +A +  + P+ V  ++  + P  M   
Sbjct: 213 EARQSWTVNAARLAVAAPWIVLVVM-ASRPEAMVAF 247


>gi|302553401|ref|ZP_07305743.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471019|gb|EFL34112.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 315

 Score = 79.0 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L E++  + 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRARTPLPEALQHLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++      P G  +L        +G   +R +   +
Sbjct: 227 VVAVSIAFVLGLSIFNRDFVEP-YGTPAGQAVLACVCGLFALGFWWLRKLSTIE 279


>gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a]
 gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia
           alni ACN14a]
          Length = 357

 Score = 79.0 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 3/184 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
                R     + +P+ +D +  +VRAG+ + + +A +  +    +R  F R  E     
Sbjct: 96  RRRHGRIHDLRELWPDVVDNLASAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSAT 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQA 121
            S S  + R+   +           + +  ++GG +L   L  LS  LR+    +A+++ 
Sbjct: 156 GSFSTCLDRLADELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELET 215

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                  +A +  + P+ V  L+            + P G ++L V      +  ++M+ 
Sbjct: 216 RQGWTVNAARLALAAPWIVLLLLATRGQN--VQAYDSPTGVLVLVVGGGVSALAYLLMKR 273

Query: 182 MINF 185
           +   
Sbjct: 274 IGRL 277


>gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1]
 gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 320

 Score = 78.6 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 67/145 (46%), Gaps = 3/145 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQ 59
           H+++++T       P+AL+++V  V AGL + + +  +     ++   +  E        
Sbjct: 159 HVVRQQTKAVASGLPDALELLVVCVEAGLSLEEGLHRVAHELREAQPALADELVLTWAEI 218

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           ++  S +++++       +  V    +++S   QLG  L+++L   +  +R+ + M  + 
Sbjct: 219 NVLPSRAQALTNFAARNDIPSVRSVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLLEE 278

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
           +A  + A  +  ++  +   V  LV
Sbjct: 279 RASRLPAMLTIPVMLFIMPTVFLLV 303


>gi|196047886|ref|ZP_03115064.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
 gi|196021142|gb|EDX59871.1| conserved membrane protein, putative [Bacillus cereus 03BB108]
          Length = 327

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 5   IKKRTAKFLD--DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + ++  KF++       +  +  S++    V D+V  +       ++ E  +       G
Sbjct: 141 MHRKKYKFVEIDRISIYMKTLSNSLQILGNVVDSVEEVKPLVHSSIKEELNKATIKLQQG 200

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            S++ES   + +  P QE+ FF  ++ V  + GG   EAL +++    +RK  + ++ A 
Sbjct: 201 KSVNESFMSLDKKYPYQELKFFHEMLDVADKNGGRNIEALESIAVDFEERKVKQMRLYAE 260

Query: 123 SMEA----KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +++     + SA  + ++PF     V    P    +L++ P G ++    A  +L   + 
Sbjct: 261 TIQGTKAFRNSALTVLAIPFIFKFFV----PDAYGMLMSTPLGSIVFVSIACVVLYCYIR 316

Query: 179 MRLMINFD 186
           ++ + ++D
Sbjct: 317 IQKLADWD 324


>gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
 gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
          Length = 283

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +   + +   +     P+A+D++V  V +GL +      +  +    S  +  E+     
Sbjct: 122 LDWWVNQVLMQISRVVPDAIDLMVICVASGLTLESVFRCVGEEMRSISPALSREWLLTAT 181

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S   +++ + + + L +++   T ++   Q G  L++AL  ++   R    ++ 
Sbjct: 182 EISVLDSPQTALNNLDKRVQLPDINNVVTTMNQALQYGTPLADALKLIASDSRQYYFLEL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +     + AK S  ++  +   V  ++   +P  +N++  
Sbjct: 242 EEWVGKIPAKMSFPLVVFIMLPVVAII--IAPIMLNLMQT 279


>gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
 gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein
           [Thermococcus sibiricus MM 739]
          Length = 353

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 74/182 (40%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + R  +     P  L  +   + AG+ +++A+  +      P+  EF  +I   H
Sbjct: 166 LRFAWRGRVVEVEKALPYVLRHMASLLSAGVGIAEAMVSVANADYGPISEEFELMIRDMH 225

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S  ++++R    M  + VS     I   ++ GGNL++ L  L+        MK    
Sbjct: 226 GGTSFEDALTRFEERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEY 285

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
              +   A  ++  ++      +V   +   M+  +  P   + + +  AF  I  MV+ 
Sbjct: 286 IQKVNGIAFVYMFITIIMPTLFVVAILAASMMSRTVVMPPSALAVILLFAFPAISSMVVF 345

Query: 181 LM 182
           ++
Sbjct: 346 MI 347


>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 200

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           +   + KR      +    L+ IV  V AG  V  A+     Q       P+  E  R+I
Sbjct: 43  LHTKVDKRDQDITIELAELLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMI 102

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
           +    G S  +S     +   +QEVS F+T + +  + GG + + AL +LSR L +++  
Sbjct: 103 DDLEGGYSFQQSFENFSKRCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKA 162

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + +     +K    +   +   +  +V   +P +M +
Sbjct: 163 ITRTRGEQASSKL---VFPMMVIFMIVIVLVGTPAFMMM 198


>gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter
           smithii ATCC 35061]
          Length = 306

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G +
Sbjct: 88  QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   M + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  M
Sbjct: 148 FDDAWMAMAQRLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A     I   +    +  +      +M   
Sbjct: 208 MAVMFLIISAVIASPFALGMVSVYSQFMQSF 238


>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 223

 Score = 78.6 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           +   +KK+    L + P  L+ I+  V AG  V  +    +   ++    P+++E  +  
Sbjct: 67  LDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCK 126

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
               + +SL++S+  + R   +QE+S F+T + +  + GG +L+ AL NLS+ L +R+  
Sbjct: 127 RELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKA 186

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +++      +K    +       +  +V   +P  M +
Sbjct: 187 VSRILGEEASSKL---VFPMALIFLIVIVIVAAPAMMMM 222


>gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 270

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 3/175 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +P+ LD +V S+RAGL VS ++A++  +  + +R  F R          +  ++  + 
Sbjct: 84  DAWPDVLDDVVASLRAGLSVSQSLAMVGERGPELMREPFSRCATMIRAQGRMGPALDELK 143

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                         + +  +LGG +L+  LA L+ ++R+    + ++ A       +   
Sbjct: 144 AEFADPMADRVLEAMRLSHELGGRDLATMLARLAAVIREDNRARGELLARQSWT-VNGAR 202

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           + +        ++ T PG +    + P G  +L        +  + M  +    V
Sbjct: 203 MAAAAPWALLGLFSTRPGTVEA-FSSPAGIAVLCGGVIVTALAYVAMIKLGQLTV 256


>gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
           SWAT-3]
 gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
           SWAT-3]
          Length = 280

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++   K   +K     P  LD++   V+ G+ +  ++  +  + ++    +  + +R  +
Sbjct: 123 LQMRRKMLISKTSAQLPYLLDMMSVCVQTGMTIEASLVYLGKELAEFDSDLCYQIKRTSD 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +  +   + ++++ +   +P   +  F   I    Q G ++++ L++L+  +R  + +  
Sbjct: 183 SAKI-HGVEKALNDLTERIPTPAIRSFVLTIIQNLQYGTSVAQTLSDLAEDMRKVQILTV 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   + AK S  +I  + F +  L+   +P  M +
Sbjct: 242 EEKVGKLSAKMSVPLILFIMFPIVILI--LAPSIMQM 276


>gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 312

 Score = 78.2 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 62/150 (41%), Gaps = 2/150 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR  + L + P   +++  SV AG   + A+  +       +  E +RV+     G S
Sbjct: 160 VRKRERRLLAELPTVAELLALSVAAGEGPAAALDRVARSCRGELADELQRVLAETRAGSS 219

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  +     L  +S F+  ++V  + G  L++ L   +  +R+    + ++     
Sbjct: 220 LVRALDGLADRTGLVALSRFADGLAVALERGTPLADVLRAQAGDIRE--ASRRELIESGA 277

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + +  +         T+ +   PG + +
Sbjct: 278 RREVAMMVPVVFLVLPVTIAFAFYPGAVGI 307


>gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 707

 Score = 78.2 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R        P+ LD +     AGL V  ++  +      P+  E  R +     G 
Sbjct: 479 LRKRRIRAIERSMPDFLDRLASVNEAGLTVVQSLRRVSASDLGPLGDEVERAVRDIDWGA 538

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               ++ RM R      VS   T+I+      G+L+  L   +   +D + +  +     
Sbjct: 539 DAQTALRRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRLARE----- 593

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
              +    +   L   +S LV+      + V           G   +  + G+
Sbjct: 594 ---RNQEMLTYLLVIYISFLVFLGIIAALTVSFIPAVEQASAGGVGSGEVAGV 643



 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 8/183 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    + R+++     P  +  +    R+G+P    +  +    +       E   V+  
Sbjct: 161 LTERARTRSSEIEATLPRTVAFVFALSRSGMPFPQVLETLARNEAIYGEAAREVSIVVRD 220

Query: 59  Q-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  +  S+  M    P   +  F+  ++     G NLS  L       ++    + 
Sbjct: 221 MDAFGTDVLSSLQTMATRTPSPSLEEFAENLASVLGSGRNLSSFLQEQYERFQEEAEAQQ 280

Query: 118 K--VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  +  LS  A+    ++ + P    T++        + L       ++  V       G
Sbjct: 281 QQYLDLLSTFAEVYVTVLVAGPLFFITVLVVIGLVLADTLT---LIRIVGYVGIPLASFG 337

Query: 176 IMV 178
            +V
Sbjct: 338 FVV 340


>gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 312

 Score = 78.2 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  L+K    K  D  P+ +D++   +  GL +  A+  +  +       + +EF  V+ 
Sbjct: 147 LYRLVKSYRTKLQDALPDTVDLLGIVLGTGLGLDQAMMRVSEEMQFIYPELANEFATVVM 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +S ++ VR   ++++   S +I    + G +L++AL   +    D    + 
Sbjct: 207 QVRAGQDRGKSFNQFVRRTGIEDIKSLSAMIIQSEKFGTSLAQALKVYA----DALRTRR 262

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS--PGYMNVL 155
           +++A +   KA   ++  +   +  +++  +  PG ++V+
Sbjct: 263 RLRAEAAVGKAGIKMLFPIVVFILPVLFVITLVPGMLSVM 302


>gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20]
          Length = 314

 Score = 78.2 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + KR ++     P+ ++++  +V AG     A+  IV      +  E    +    
Sbjct: 159 LTRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERIVALGRGDLVDELSSTLTDIR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ RM R +    V+     I V  + G  L+E L + +  +R+    +  + 
Sbjct: 219 SGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTPLAEVLRSQAADVRE--AARQDLM 276

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
                 + +  +         T+V+   PG  
Sbjct: 277 EEGGRREIAQMVPVVFLVLPITVVFALFPGLF 308


>gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 359

 Score = 78.2 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 73/179 (40%), Gaps = 4/179 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR+++   + P AL  +   +++GL + D++  +       +  EF R +E    G +  
Sbjct: 178 KRSSEASRELPFALRQMATELKSGLGLHDSMRSVAMSGYGALSEEFARTLEEIKYGETTE 237

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M   +    +      I+     GG+LS+ L  ++  +     MK K  +  + +
Sbjct: 238 SALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNS 297

Query: 127 -KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
                  +  L   +  ++   +   M  ++  P   +L+ +    ML+G    +++ +
Sbjct: 298 FTMIYMFLAILGPVIFLVMLLAASTVMGSVL-PPIAIILIYLFLFPMLVGFMAFMIKRL 355


>gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
           magnetotacticum MS-1]
          Length = 319

 Score = 78.2 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           + + ++KR       FP+ALD+IV  V AGL V  A+  +  +    S  +  E      
Sbjct: 160 LANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMNSSPEMAEEIGLTAA 219

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                    ++         L +V   ST +    + G  +++AL  LS+  R+ +   A
Sbjct: 220 ELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALKVLSQENRESRMAAA 279

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A ++ AK +  +I      +  ++
Sbjct: 280 EKKAAALPAKLTVPMIVFFLPVLFLMI 306


>gi|332982943|ref|YP_004464384.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700621|gb|AEE97562.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 308

 Score = 77.8 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 1/173 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +   R  K    F  A+  +   ++    + + +      +  P+  E  +++    
Sbjct: 120 LNMIGTSRHNKLNKQFAEAVQDMADRLKLVPNLENGIRETAQITDQPLHGELEKILHKLD 179

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  ++    R      + F+   I    Q+  ++++    +S+  R R     +V 
Sbjct: 180 TGIGIIPALKDFARDSESTMIDFWVDSIVFAYQMRASVADVCEEVSQKTRTRLKQNNQVA 239

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
               E K+    I  +   +  +VY +SP Y+N   +   G + L        
Sbjct: 240 TKLSEIKSMMLSIAGIMIALMFMVYSSSPEYLNS-FDTLWGKIALIYTVISYA 291


>gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca
           glomerata]
          Length = 315

 Score = 77.8 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   S   +  E R  +    
Sbjct: 159 LTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRLSHGELGRELRLALADAR 218

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  M     +  ++ F   ++V  + G  L+E L   +  +R+      K Q
Sbjct: 219 AGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEVLRAQAVDVRE----AGKRQ 274

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVLIN 157
            L    +    ++  + F V    +++   P  +++  N
Sbjct: 275 LLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVSLSFN 313


>gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 283

 Score = 77.8 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +   I+    +   D P  LD++   + AG  + +A+ +         + +  R+ +   
Sbjct: 127 LGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHCPPGLLTTALRQALNEM 186

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S  E++  M   + +  V  +   ++   +LGG     L  L+  LR+    +A+ 
Sbjct: 187 RAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRAEE 246

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    ++  +  C   ++ F
Sbjct: 247 AAMRAPVKMLFPLVTCMFPCTFLILAF 273


>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
 gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
          Length = 204

 Score = 77.8 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 3/142 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISR 71
           L + P  +DI++  + +GL    A+ +   + S  +  E      T  LG  +  E++++
Sbjct: 61  LREMPEMIDILILGLSSGLSFDSALDLYCLRESGELSKELSNAHMTWKLGANTREEALNQ 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   + +  +  F+TV++     G  L+E L   + +LRD +    + +   +  K    
Sbjct: 121 MAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSLLETEIEKIPIKMLIP 180

Query: 132 IIGSLPFCVSTLVY--FTSPGY 151
           +   +   +   +      P +
Sbjct: 181 LGTLIVPAMLLAILGPLLGPAF 202


>gi|119714630|ref|YP_921595.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119535291|gb|ABL79908.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 258

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +  +++   + AG P  +A+                RV E   +G  +  ++  +  
Sbjct: 87  QVLDTCELLAGELTAGRPPGEALQRAAASWPP-----LARVAEAFRVGADVPSALRVLAA 141

Query: 75  YM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +   +++   +    V  + G  L+ A+  ++  LR     +  V      A+A+A ++
Sbjct: 142 DLEGARDLRVVAAAWQVAHRTGQGLASAVERVAESLRAGAATRRMVTGELGSARATARLV 201

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             LP     +           L+  P G + L    AF L G+  
Sbjct: 202 AGLPVLALAMGSGAGGDPWGFLLGHPAGLLCLAGGLAFGLAGLWW 246


>gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
 gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing
           protein [Actinomyces viscosus C505]
          Length = 284

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 108 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 167

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                       + +  ++GG +L   L +LS++LR+    + +++A        A +  
Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 227

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  L+  + P             +LL  A    +I   +M  +   
Sbjct: 228 AAPWLVLALLS-SRPQAAAAYATGAGAVILLIGAVVS-VIAYRLMLRLGRL 276


>gi|333025170|ref|ZP_08453234.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332745022|gb|EGJ75463.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 340

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
              +++       L +++  +   +           + + ++L G  L + L  L++  R
Sbjct: 163 LEALVDRLRARTPLPDALQSLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 222

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  +M+ +V A     + S  I+ ++       +   +  +++   N P G ++L     
Sbjct: 223 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 281

Query: 171 FMLIGIMVMRLMINFD 186
              +G   +R +   +
Sbjct: 282 LFALGFWWLRKLSTIE 297


>gi|302559126|ref|ZP_07311468.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476744|gb|EFL39837.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 319

 Score = 77.8 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      ++  +R     +++       L E++ ++ 
Sbjct: 107 EALASWTESLRDTIAGAVGLEQAIPASARAAAPVLRPHLDALVDRLRSRTPLPEALQQLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L + L  L++  R+  +M+ +V A     + S  I
Sbjct: 167 DEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAREEVDMRQRVMAQRASTRRSVQI 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           + ++       +   +  ++        G ++L        +G   +R +   +
Sbjct: 227 VVAVSIAFVLGLSVFNRDFVEP-YGTAVGQLVLACVCGLFALGFWWLRKLSTIE 279


>gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20]
          Length = 283

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEAVRPQFRAFATDYAASARFDSSLDRLKTR 166

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                       + +  ++GG +L   L +LS++LR+    + +++A        A +  
Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226

Query: 135 SLPFCVSTLV 144
           + P+ V  L+
Sbjct: 227 AAPWLVLALL 236


>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 279

 Score = 77.4 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R    LD  P  +D+I   V+AG+ V  +V  I  +S+D  ++    ++    
Sbjct: 120 LNPAINTRIKLMLDALPYFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVK 179

Query: 61  LGL--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                 L E +  + R M + E+  F   +      G +L E L  LS+ +RD + + ++
Sbjct: 180 RAEVSGLEEGLMDLYRSMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSE 239

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   + AK S  +I  + F ++ L+   +PG + ++
Sbjct: 240 EKIGKLSAKMSVPLILFIMFPITILI--AAPGILRIM 274


>gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130]
 gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130]
          Length = 328

 Score = 77.4 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K  +K R       +P+ALD+ +  V +G+ +  A   +  +    S P+  E      
Sbjct: 169 VKQKMKARQLSISQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTA 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   +V    L+ V      +    + G  LS AL  LS+  RD +   A
Sbjct: 229 ELSFLQERKHAYDNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMA 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A  +  K +  ++      +  ++    P  +  +
Sbjct: 289 EKKAAGLGPKLTVPMMICFLPVLFCVI--LGPAVIRTM 324


>gi|302521143|ref|ZP_07273485.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430038|gb|EFL01854.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 351

 Score = 77.4 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
              +++       L +++  +   +           + + ++L G  L + L  L++  R
Sbjct: 174 LEALVDRLRARTPLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 233

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  +M+ +V A     + S  I+ ++       +   +  +++   N P G ++L     
Sbjct: 234 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 292

Query: 171 FMLIGIMVMRLMINFD 186
              +G   +R +   +
Sbjct: 293 LFALGFWWLRKLSTIE 308


>gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
 gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
          Length = 187

 Score = 77.4 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 5   IKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++KR    K   + P  LDI+   V+  + +  + A +  +     +    ++ +T   G
Sbjct: 27  MRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQINKTSEAG 86

Query: 63  L--SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               + +++  +   +P  E++ F   I      G +++  L++L+  +R  K ++ + +
Sbjct: 87  KVHGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIKLLEIEEK 146

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              + AK S  +I  + F +  +++  +PG++ +     RG
Sbjct: 147 MGKLSAKMSVPLILLIMFPI--VIFILAPGFLQIDFTSFRG 185


>gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
 gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
          Length = 323

 Score = 77.4 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 2/188 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58
           + + + K      ++F   L  I   +  GL    A+      G +S  +  E   V + 
Sbjct: 133 LMNKMDKTRKALKEEFMEKLRDIGAHLSVGLNFITAINESLNSGNTSIVMARELSSVKDD 192

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            + G S SE+  +M   + + E+  F+ V  +  + GGN  + +       + ++ +  +
Sbjct: 193 IYSGKSYSETFMKMYERLQISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQE 252

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +      +     +  +P           P  +    +   G +L  +  + +  GI++
Sbjct: 253 NEVYEAAMRTEQKFVIGIPSICIVAFGVFMPEIIRGFYSSFFGQVLGIILFSIIYGGILL 312

Query: 179 MRLMINFD 186
           M   + F 
Sbjct: 313 MSRFVRFR 320


>gi|318062247|ref|ZP_07980968.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318080605|ref|ZP_07987937.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 351

 Score = 77.4 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
              +++       L +++  +   +           + + ++L G  L + L  L++  R
Sbjct: 174 LEALVDRLRARTPLPDALQFLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 233

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  +M+ +V A     + S  I+ ++       +   +  +++   N P G ++L     
Sbjct: 234 EEVDMRQRVMAQRAATRRSVQIVVAVSVLFVLGLAIFNKDFVSP-YNSPVGQVVLAGVCG 292

Query: 171 FMLIGIMVMRLMINFD 186
              +G   +R +   +
Sbjct: 293 LFALGFWWLRKLSTIE 308


>gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
           DSM 2375]
          Length = 306

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G +
Sbjct: 88  QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++   M + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  M
Sbjct: 148 FDDAWMAMAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A     I   +    +  +      +M   
Sbjct: 208 MAVMFLIISAVVASPFALGMVSVYSQFMQSF 238


>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 220

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P ALD+    + +G P+  A++      +  + + FRR   +  LG +L+E+++     
Sbjct: 79  LPFALDVFAACLHSGAPLDRALSTCAEAVNPALANRFRRAARSLTLGATLAEALTEFD-- 136

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             L +       I   +  G  L+++L  L++ LR       +  ALS   +A  W++  
Sbjct: 137 -SLADGHRLVQTIGRSADTGARLADSLHLLAKELR----FDREQAALSHAHRAGVWMV-- 189

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           LP C+  L  F + G + V+I+   G +
Sbjct: 190 LPLCLCFLPAFIAAGLLPVVISSLDGIL 217


>gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
 gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus VM223]
          Length = 291

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLG 62
           KK T K     P  LD++   V  G+ +   +  +          +    ++ +E   L 
Sbjct: 139 KKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSKL- 197

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ++++     +P  E   F   ++   + G ++   LA L+  +R+   M  + +  
Sbjct: 198 VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIG 257

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            M AK S  +I  +   +  L+   +PG M + 
Sbjct: 258 KMGAKMSIPLIAFIMVPIIILI--AAPGIMRMF 288


>gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
 gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
          Length = 284

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQ 59
             +K        + P+ALD++V  V +G  +      +  +    S  +  E+ +     
Sbjct: 125 WRVKAVIHDIAKNIPDALDLMVVCVSSGQSLETTFNTVGEEMKTISQSLSREWLQTANEI 184

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +  S  +++  +   + L EV+     ++   + G  ++EAL  ++   R  + ++ + 
Sbjct: 185 AVLDSPQKALFNLDERLKLPEVNNMIVTMAQALKFGTPMAEALKLIASDNRQYQMLELEE 244

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
               + AK S  ++  +   V  ++
Sbjct: 245 WVGKIPAKMSFPLVVFIMMPVVVII 269


>gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 315

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 4/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +     +R      + P  LDI++ ++ AG+ V   +  +     +++       RR I 
Sbjct: 143 LGVYADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRRTAPVTGKVLRRHIA 202

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN-MK 116
               G+    ++ R+ + + L E    +  I      GG LS  L   S  L D++  M 
Sbjct: 203 DIDAGMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLRRFSVDLSDKRMGMA 262

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTL 143
            +             I+  +P  +  L
Sbjct: 263 REQVGRKAPQLTLVMILFFMPVLLIVL 289


>gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia
           dentocariosa M567]
 gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia
           dentocariosa M567]
          Length = 310

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 2/150 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I +R  + + +FP   +++  SV AG     ++  I   S   +  EF  ++    
Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  +++   +   +  +S F   ++V  + G  L++ L   ++ +RD    K ++ 
Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDN--AKRELL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            ++ + + +            T+V+   PG
Sbjct: 273 EVAGKKEIAMLAPVVFLILPLTVVFAIFPG 302


>gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
 gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
 gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
 gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio mimicus MB-451]
          Length = 291

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLG 62
           KK T K     P  LD++   V  G+ +   +  +          +    ++ +E   L 
Sbjct: 139 KKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTVERSKL- 197

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + L ++++     +P  E   F   ++   + G ++   LA L+  +R+   M  + +  
Sbjct: 198 VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMDLEEKIG 257

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            M AK S  +I  +   +  L+   +PG M + 
Sbjct: 258 KMGAKMSIPLIAFIMVPIIILI--AAPGIMRMF 288


>gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 310

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 2/150 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +I +R  + + +FP   +++  SV AG     ++  I   S   +  EF  ++    
Sbjct: 155 LGQIIVRREKQLIAEFPALAEMMALSVAAGESALASLERICRTSRGELAREFNDILAQTR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  +++   +   +  +S F   ++V  + G  L++ L   ++ +RD    K ++ 
Sbjct: 215 AGSSLLAALNEFAQSTQIPALSRFVDGVAVAIERGTPLADVLRAQAQDVRDN--AKRELL 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
            ++ + + +            T+V+   PG
Sbjct: 273 EVAGKKEIAMLAPVVFLILPLTVVFAIFPG 302


>gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Grimontia hollisae CIP 101886]
 gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Grimontia hollisae CIP 101886]
          Length = 288

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 3   HLIKKRT---AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVI 56
           +L  +R     K     P  LDI+   V+ G+ +  ++  +  + +     +    +R+ 
Sbjct: 132 YLEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAFDKDIAYVLKRLR 191

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           +       L +++  +  ++P  E+  F   ++   Q G ++ EAL+ L++ +R+ + + 
Sbjct: 192 DRAQT-KGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSILAKDIREIQLLS 250

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            + +A  + +K S  +I  +   +  L+  T+PG M +L
Sbjct: 251 LEEKAGKLSSKMSVPLILFIMMPIVILI--TAPGIMRML 287


>gi|295837159|ref|ZP_06824092.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|197699511|gb|EDY46444.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 291

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
              +++       L +++  +   +           + + ++L G  L + L  L++  R
Sbjct: 114 LEALVDRLRARTPLPDALQLLADEIDDASADIIVAALILNARLRGPGLRQVLGALAKSAR 173

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +  +M+ +V A     + S  I+ ++       +   +  +++   N P G ++L     
Sbjct: 174 EEVDMRQRVMAQRASTRRSVQIVVAVSVLFVLGLAVFNKDFVSP-YNSPVGQVVLAGVCG 232

Query: 171 FMLIGIMVMRLMINFD 186
              +G   +R +   +
Sbjct: 233 LFALGFWWLRKLSTIE 248


>gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 264

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
            P+ALD++V    AG  ++  V  +  + +    P+  E     +   L   ++ +++  
Sbjct: 120 LPDALDLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHF 179

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              + L      +T ++   + G  +++AL  L+R  R  + +  + +A  +  K +  +
Sbjct: 180 ATRVDLPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPM 239

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   V  +     P  + +L
Sbjct: 240 MLFILPTVCLI--AAGPAAIRLL 260


>gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
 gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
          Length = 213

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 55/134 (41%), Gaps = 1/134 (0%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLSESISR 71
           L + P  LD++   + AGL    ++ +        + SEF   + +  +G +   +++  
Sbjct: 69  LSELPTMLDVVNLGLSAGLSFDASLELYCDNYETELSSEFGGALLSWRVGAVGRGDALLG 128

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   + L  +  FST +    + G  L+E L   S ++R+ +  + + +   +  +    
Sbjct: 129 LAERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQVEEEIEKVPVRMLIP 188

Query: 132 IIGSLPFCVSTLVY 145
           +   +   +   + 
Sbjct: 189 LGTLIVPAMLVAIL 202


>gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 284

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           ++  + +   +     P+ALD++V  V +GL + +   V+  +    S  +  E+     
Sbjct: 123 LEWRVNQIRQEISKVAPDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTAT 182

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +  S  +++  + + + L +++     +S   Q G  LS+AL+ ++   R  + +  
Sbjct: 183 EMSVLDSPQQALQNLDQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDL 242

Query: 118 KVQALSMEAKASAWIIGSLPF 138
           +     + AK S  ++  +  
Sbjct: 243 EEWVGKIPAKMSFPLVVFIML 263


>gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
 gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
          Length = 295

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 64/157 (40%), Gaps = 2/157 (1%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
             +  A+   +  ++  +R   R +++  H  + L +++      +           + +
Sbjct: 123 AGLEQAIPSSIRAAAPMLRPHLRALVDRLHTRMPLPDALRLFADELDDPSADLVVAALIL 182

Query: 91  QSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
            S+L G  L + L  L+   R+  +M+ +V+A     + S  I+       +  +   +P
Sbjct: 183 NSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQIVVGTAVAFAVALVVFNP 242

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            Y+    ++  G  +L V A F   G   MR + +FD
Sbjct: 243 SYVEE-YDNTLGQAVLVVVAGFFGAGFAWMRRLAHFD 278


>gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1]
 gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus
           NA1]
          Length = 355

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 72/181 (39%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + K+R  +     P AL  +   + AG+ +S+A+  +       +  EF  ++     
Sbjct: 169 KMMWKRRVVEVERAMPYALRHMASLLSAGVGISEAILSVARADYGVISEEFELILRDMRT 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++++    M  + VS     I    + GGNLSE L  ++        MK     
Sbjct: 229 GSSFEEALTKFDEKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYV 288

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             +   A  ++  ++      +V   +   M   +  P   + + +  AF  +  +++ +
Sbjct: 289 QRVNGIAFIYMFITIVMPTMFVVGILAGSVMAQSLIMPPETLAVILLFAFPALSFIIVNM 348

Query: 182 M 182
           +
Sbjct: 349 I 349


>gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 272

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 5/170 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
                 A D +   + AG P  DA+          V +E R       LG  +   +   
Sbjct: 104 RAQVIEACDTLAAELAAGRPPHDALEGAAE-----VCAELRPAAAAARLGGDVPAVLQLA 158

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 + +   +    V  + G  ++  +  L+  LR  ++++ ++      A+ +A +
Sbjct: 159 ADTPGAESLKALAAAWQVADRSGAAVAAIVDRLAASLRAEESLRRQIATNLAGARTTARL 218

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +  LP   + L Y      +  L     G   L    A  + G+     +
Sbjct: 219 LAILPLFGTLLGYALGADPLTFLTTTIPGAACLTAGLALAITGLWWTERL 268


>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
 gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
          Length = 313

 Score = 76.3 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
              L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++
Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRTTLADMRAGASLSAAL 226

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R + L  V  F   + +    G  L++ L   ++ +R+      + + +    +  
Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREM----GRRELMEAAGRKE 282

Query: 130 AWIIGSLPFCVSTL--VYFTSPG 150
             ++  L F +  L  ++   PG
Sbjct: 283 IQMMVPLVFGILPLTVIFAVFPG 305


>gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
           17982]
          Length = 298

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R        P+  +++  +V AG  +  A+  + G +  P+  E         
Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGVELSLTAGHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
               E      ++   LP  V   +Y
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288


>gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 313

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   +++R    L +FP   +++  +V AG   + A+A +   S   +  E    +    
Sbjct: 157 LTQQVQRREELLLTEFPVVAELLALAVTAGESPTAAIARVTRLSGGELARELGAALGRAR 216

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ L++++ ++     L  ++ F   + V  + G  L+E L   +  +R+    K ++ 
Sbjct: 217 AGVPLADALQQVADRTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVREAG--KRRLL 274

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                 + +  +         T+++   PG ++++
Sbjct: 275 EAGGRKEIAMMVPVVFLVLPVTVLFALYPGLISIV 309


>gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
 gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
          Length = 141

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP------VRSEFRR 54
           ++   +K    F   F +AL  +   +  G  + +A+  +             +  EF  
Sbjct: 2   IRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFTY 61

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           ++   +L ++   +       + L EV  F TV S+  + GG+    + N  R L D+  
Sbjct: 62  MVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKAE 121

Query: 115 MKAKVQALSMEAKA 128
           +K ++  +    K 
Sbjct: 122 VKREIDTVIAAKKW 135


>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
 gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
          Length = 296

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   I+KR    L +F   +D+    + +GL    A   I+  + +   +  E  +++  
Sbjct: 135 VNSKIQKRQRDMLGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKTVLEEELDKMLNE 194

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG S  E++ R+     +QE+  F  +I    +LG +L + L N S  LR R+  KA+
Sbjct: 195 VKLGYSRREALERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAE 254

Query: 119 VQALSMEAKASA-WIIGSLPFCVSTLV 144
             A     K      +   P     ++
Sbjct: 255 KLAAQASTKMLVPLFLFIFPTVFILIL 281


>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
 gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
          Length = 303

 Score = 75.9 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + H  K R  +     P AL+++  SV AG+ V      +    +  P+  EF R     
Sbjct: 143 LSHAGKTRGEEIDRYLPPALELLTISVSAGVLVERGFRQLAENKALGPLADEFARTDMEI 202

Query: 60  -HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            HLG+S  +++  M R      + +F   +   ++ G ++S  L + +++ R     KA+
Sbjct: 203 SHLGVSRVDALDHMRRRCDSPLMGYFCAALIEATRKGTSISGVLESQAKLAR-----KAR 257

Query: 119 VQALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             AL+ +  K S  +   L F +  ++    P  +  
Sbjct: 258 YDALTAQINKLSTKMAVPLVFFLIAVLVLILPPLIIP 294


>gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309]
 gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309]
          Length = 298

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R        P+  +++  +V AG  +  A+  + G +  P+ +E         
Sbjct: 143 LTMRANARQRAIDASVPDCSELLALAVAAGESIPAAIERVAGCAGGPLGAELSLTAGHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEE 262

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
               E      ++   LP  V   +Y
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288


>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
 gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 290

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVI 56
           +   ++KR  + L + P  L  ++  V AG  V  A+   V      +  P+  E R+ +
Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
                G S  ++   + +   +QE++ F+T + +  + GG +   AL  LS+ L  ++  
Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ +        S+ ++  +   + T++       + ++
Sbjct: 253 ISRTRGEQA----SSKLVFPMALILLTVIVLVGAPALMMM 288


>gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
 gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
 gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
 gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
 gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329]
          Length = 288

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72
            P  LD++   V  G+ +  ++  +  +     + +    ++  E   + + L  +++  
Sbjct: 148 LPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEF 206

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +P  E   F   ++   + G ++   LA+L+  +R+   ++ + +   M AK S  +
Sbjct: 207 YDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPM 266

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           I  +   +  L+   +PG M +L
Sbjct: 267 IAFIMIPIVVLI--AAPGIMRML 287


>gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 296

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+ +D +  +VRAG+ + + +A +  +    +R  F R  E      S S  + R+ 
Sbjct: 107 ELWPDVVDNLSSAVRAGMSLPEGLAAVGVRGPVQLRPAFTRFGEDYSATGSFSACLDRLA 166

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +  ++GG +L   L  LS  LR+    +A+++        +A +
Sbjct: 167 DELADPVADRIIESLRMAREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARL 226

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+ V  L+            + P G ++L V  A   +  ++M+ +   
Sbjct: 227 ALAAPWIVLLLLATRGQN--VRAYDSPTGVLVLVVGGAVSALAYLLMKRIGRL 277


>gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein
           [Methanobrevibacter smithii DSM 2374]
 gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 306

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 61/151 (40%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +KR A+     P+ L  +   ++ GL   +A+  +      P+  E RR I    +G +
Sbjct: 88  QEKRAAEIEKSAPDFLRQLSAMLKVGLSFENAMEDMSKYGEGPLYDETRRAIAEIKVGRN 147

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++     + +  +E+    T+I    + G +++  + ++S  LRD   +K + ++  M
Sbjct: 148 FDDAWMATAQRLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVM 207

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A     I   +    +  +      +M   
Sbjct: 208 MAVMFLIISAVIASPFALGMVSVYSQFMQSF 238


>gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
 gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
          Length = 288

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRM 72
            P  LD++   V  G+ +  ++  +  +     + +    ++  E   + + L  +++  
Sbjct: 148 LPFLLDLMNVCVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEF 206

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +P  E   F   ++   + G ++   LA+L+  +R+   ++ + +   M AK S  +
Sbjct: 207 YDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPM 266

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           I  +   +  L+   +PG M +L
Sbjct: 267 IAFIMIPIVVLI--AAPGIMRML 287


>gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 314

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 290 MLFILPTVGLI 300


>gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 283

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P A+D +V  VRAG+ + +A+  +  +  + VR +FR              S+ R+   
Sbjct: 107 WPEAVDTLVSGVRAGMSLPEALTNLGERGPEVVRPQFRAFASDYAATARFDSSLDRLKAR 166

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                       + +  ++GG +L   L +LS++LR+    + +++A        A +  
Sbjct: 167 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWTVNGAKVAV 226

Query: 135 SLPFCVSTLVY 145
           + P+ V  L+ 
Sbjct: 227 AAPWLVLALLS 237


>gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
 gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
          Length = 293

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIE 57
           +K   +  +++     P+ALD++V  V +GL +      +  +    S  +  E+     
Sbjct: 132 VKFRARLVSSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEA 191

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L  S  +++  +     + E+      +S   + G  +++++  ++   R  + +  
Sbjct: 192 ELRLLDSRPQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLAL 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   + AK S  ++  +   V  L+   +P  + ++ +
Sbjct: 252 EEKVGKIPAKMSMPLVVLVMIPVVVLI--VAPTIIELMTS 289


>gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 289

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 6/167 (3%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D I  +V     +  A+      ++  +  +   + +   +   L  ++ R    +    
Sbjct: 112 DTIAGAV----GLEQAIPATAYAAAPSIAPQLTILADRLRVRTPLPVALQRFADDLDDPS 167

Query: 81  VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                  + + ++L G  L + L +L+   R+   M+ +V A     + S  I+ ++   
Sbjct: 168 ADLIVAALMLNAKLRGPGLRDVLTSLADSAREELEMRRRVGAGRASTRRSVQIVMAISIA 227

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
               +   +  Y+    +   G ++L V   F + G   MR + +F+
Sbjct: 228 FVFGLTLFNRDYVEP-FSSALGQVVLLVVMLFFVAGFAWMRRLSDFE 273


>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 313

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
              L +FP+  ++   SV AG   + A+  I G +   +  EFR  +     G SLS ++
Sbjct: 167 EAILSEFPSVAELFALSVGAGESAAGALERIAGTARGELAGEFRVTLADMRAGASLSAAL 226

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             M R + L  V  F   + +    G  L++ L   ++ +R+      + + +    +  
Sbjct: 227 KAMGRRVQLAPVERFIGGVLIALDRGTPLADVLRAQAQDVREM----GRRELMEAAGRKE 282

Query: 130 AWIIGSLPFCVSTL--VYFTSPG 150
             ++  L F +  L  ++   PG
Sbjct: 283 IQMMVPLVFGILPLTVIFAVFPG 305


>gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383]
 gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383]
          Length = 314

 Score = 75.5 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  +  +  + +    P+  E     +   L   ++ +++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELTVCADELTLSGDVAATLTHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 AMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQIVALEERAAKLAPKITLPM 289

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  +   V  +     P  + +L
Sbjct: 290 MLFILPTVCLI--AAGPAAIRLL 310


>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 284

 Score = 75.5 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIET 58
             ++K +  K + D P  +D++  +V+ G+ +  A+  +     + +  +     R+I  
Sbjct: 127 NAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 186

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             L   LS+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  +
Sbjct: 187 SEL-TGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSIYSHLIQLSADIREIQLLIIE 245

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 246 EKLGTLSAKMSIPLILFIMFPIIILI--LAPGIMRVF 280


>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
          Length = 187

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 9/147 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70
           +DFP+ALD++   V AGL +  A+  +  +       V SE   ++     G +   ++ 
Sbjct: 33  EDFPDALDLLTVCVEAGLGLDAALMKVSDELHFRSAVVASELALLLLEMRSGFTKETALR 92

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +     +++V  F T++    + G +++E+L  LS +L      + +++A    AK + 
Sbjct: 93  NLALRTGVEDVESFCTMLIQADRFGTSVAESLRVLSDML----RTRRRMRAEERAAKIAL 148

Query: 131 WIIGSLPFCVSTLVY--FTSPGYMNVL 155
            ++  L FCV   +      P  ++V 
Sbjct: 149 KLLFPLIFCVFPALMGVLLGPALIHVY 175


>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 358

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     G S 
Sbjct: 171 RRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRAGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E++ R    M  + VS     I    + GGNL+E L  ++        MK       + 
Sbjct: 231 EEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYVQKVN 290

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMN 153
             A  ++  ++      +V   +    +
Sbjct: 291 GIAFIYMFMTIVMPTMFIVAILAGSAFS 318


>gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2
           [Achromobacter xylosoxidans A8]
 gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2
           [Achromobacter xylosoxidans A8]
          Length = 290

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++ L  KR      D P   D++   V AGL V  A+ +         +R      +   
Sbjct: 133 LRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQSGPAGILRDALADALAEM 192

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S + +I  +           ++  ++    LG +L   L   +   R  ++++A+ 
Sbjct: 193 RAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPVLRAQAAQSRSDRHVRAEQ 252

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +IG +  C   ++ F
Sbjct: 253 LAMQAPVKMLLPLIGCIFPCTFIVLAF 279


>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
 gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
          Length = 285

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIET 58
             ++K +  K + D P  +D++  +V+ G+ +  A+  +     + +  +     R+I  
Sbjct: 128 NSILKSKIKKIMVDLPGFIDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRK 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +   LS ++  +   +P  EV  F +V+      G ++   L  LS  +R+ + +  +
Sbjct: 188 SEI-TGLSSALQDLSISLPTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIE 246

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 247 EKLGTLAAKMSIPLILFIMFPIIILI--LAPGIMRVF 281


>gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
           10507]
          Length = 337

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS------DPVRSEFRRVIET 58
            KKR  + + D+P  +      ++AG+ V  A   I            P   E RR    
Sbjct: 181 RKKREEELIMDYPGLVTKFTLLIQAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRTCIE 240

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G+S  E+     +     +   FST++    + G  NL + L   S    + +  +A
Sbjct: 241 MDSGVSQKEAYQNFGQRCAQAKYKTFSTLLVQNLRSGNRNLVDMLERESTEAWEERKRRA 300

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVY 145
           ++   +   K    +I  L   ++ L+ 
Sbjct: 301 RIHGETAATKLLVPMILMLGVVLALLMI 328


>gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 255

 Score = 75.1 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 111 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 170

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 171 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 230

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 231 MLFILPTVGLI 241


>gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 314

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELTVCADELTLSGNVSEALAHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 290 MLFILPTVGLI 300


>gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str.
           MC2 155]
 gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 210

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           ALD++V  +R G    DA     G+S  PV    R V     LG  ++  +  + R   L
Sbjct: 40  ALDVLVGELRVGAHPVDAFGAAAGESGGPVAEGMRAVAARARLGADVAAGLDDVARASQL 99

Query: 79  Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    +    G  L   +      + +R+   A+V+A     + +A ++  LP
Sbjct: 100 PGHWQRLAVCWRLAQTHGLALGTLMRAAHEDIVERERFSARVRAAMAGPRTTALVLAGLP 159

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                L        +  L+    G  LL +       G++    + 
Sbjct: 160 LAGIALGQAIGAAPVAFLVASGAGGWLLVIGVVLACAGLLWSDRIT 205


>gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
 gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
          Length = 288

 Score = 75.1 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65
                   P  LD++   V  G+ +  ++  +  +       +    R  +E   L + L
Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++      +P  E   F   +    Q G ++   L  L+  +R+   M  + +   M 
Sbjct: 200 EKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLEERIGKMG 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           AK S  +I  +   +  L+   +PG M  L+
Sbjct: 260 AKMSIPLIAFIMVPIIILI--AAPGIMRALM 288


>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
 gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
          Length = 275

 Score = 74.7 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +   + P+ LD++  ++ AGLP+  AV  +  +++  +  E+R V     LG+    ++ 
Sbjct: 132 EMEAELPDLLDLLRVALGAGLPLERAVGDVADRATGLLAREWRTVAVEIGLGMPRERALV 191

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +    P   V      +   ++ G  L EALA  +R  R  +  +   QA     K  
Sbjct: 192 ALAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKIQ 250


>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 189

 Score = 74.7 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++KR A+   D P A+D++   +RAG P   A+A +      P+      V     LG  
Sbjct: 35  VRKRNARISADLPLAVDLLAACLRAGRPPQAAIATVGHALDGPLAGLLAEVERRLDLGAD 94

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++ S +         + F+       + G  L++ L + S  LR  +   A+ Q  ++
Sbjct: 95  AIDAWSVLRAE---PTCATFARATQRALRSGAPLAKTLESQSADLRQSRRWTAEQQTRAV 151

Query: 125 EAKASAWI-IGSLP-FCVSTLVYFTSPGYMNVLIN 157
           E ++   + +  LP F +  +V   +  + ++L  
Sbjct: 152 ETRSVLPLGLCFLPAFVLLGVVPTIAATFTDILTE 186


>gi|256397304|ref|YP_003118868.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363530|gb|ACU77027.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 303

 Score = 74.7 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 6/174 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL     S+R   AG   +  A+      +S  +R     +++     + L +++    
Sbjct: 105 EALAGWTESLRDTIAGAVGLEQAIPATARAASPAIRENLHTLVDRLRARMPLPQALEYFA 164

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             M           + + ++L G  L E L  L++  R+  +M+ +V A     + S  I
Sbjct: 165 DDMDDASADLVIAALILNARLRGPGLREVLGALAQSSREEVDMRQRVMAQRSSTRRSVQI 224

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +  +   V   +   +  ++    +   G ++L         G   +R + + +
Sbjct: 225 VVGVSVAVVLGLAVFNKSFVQP-YSTATGQLVLLGVIGLFAAGFFWLRKLSSIE 277


>gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 311

 Score = 74.7 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 67/151 (44%), Gaps = 2/151 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + H I++R+ + + +FP   +++  +V AG P + A+  +   S+  +  E   V+    
Sbjct: 156 LTHTIRRRSERIILEFPTIAELLALAVAAGEPPATALDRVSRTSNGELSHELAIVMNEVR 215

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+++++R    + L  ++ F+  ++V  + G  L+  L   ++  RD       + 
Sbjct: 216 SGEPLTDALTRFGDRVDLPLITRFAEGVTVAIERGTPLAAVLRAQAQEARDAG--HRTLM 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            +  + +    +         ++V+   P +
Sbjct: 274 EVGGQREILMMVPVVFIILPISIVFAVFPSF 304


>gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 300

 Score = 74.7 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++ L  +R      +    L ++V    +GL +  ++ ++V Q+SD    +  E  RV+ 
Sbjct: 138 LRWLAARRRKMISKEITTFLYMLVMLFDSGLSLEHSLRIMVEQASDIMPHLAQELERVLA 197

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++  M + + + E+S    ++   +Q GGN+ +++   + ++ +R+    
Sbjct: 198 RIRAGQDQGKALMSMSQMLDIPELSEAVAMLKQVAQQGGNVRDSIMRYAALIEERQFSHL 257

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   + AK +  ++  +    + +++   PG++ +
Sbjct: 258 RERVSKLSAKMTIVMMIFM--FPALMIFIAGPGFIGL 292


>gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
 gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
          Length = 284

 Score = 74.7 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65
             +   + P+ALD++V  V +G  +      +  +    S  +  E+        +  S 
Sbjct: 131 RQEIAKNIPDALDLMVVCVSSGQSLEATFNTVGQEMKSISPSLSREWLVTATEMAVLDSP 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ +   + L EV+     +S   + G  +++AL  ++   R    ++ +     + 
Sbjct: 191 QVALTNLDTRLALPEVNNMIVTMSQALKFGTPMADALKLIASDNRQYHMLELEEWVGKIP 250

Query: 126 AKASAWIIGSLPFCVSTLV 144
           AK S  ++  +   V  ++
Sbjct: 251 AKMSFPLVVLIMLPVVVII 269


>gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 338

 Score = 74.3 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 66/156 (42%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   +   + +E R  +   H
Sbjct: 182 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTHGELGTELRLALADAH 241

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL +++  +     L  ++ F   ++V  + G  L++ L   +  +R+      K Q
Sbjct: 242 AGASLVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQAVDVRE----AGKRQ 297

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F +    +++   P  ++ 
Sbjct: 298 LLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSF 333


>gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 314

 Score = 74.3 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64
           +  ++   FP+ +D+++  + AG+ +  A   +  +              ++     G  
Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRR 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+++ +   + + E    S +     +LG ++++ L   S+ +RD + ++A+ +A ++
Sbjct: 216 LREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSKEMRDIRVVRAEEKANAL 275

Query: 125 EAKASAWIIGSLPFCVSTL 143
             K        LP      
Sbjct: 276 PVKM------LLPLGAFLF 288


>gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 313

 Score = 74.3 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 60/142 (42%), Gaps = 3/142 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64
           +  ++   FP+ +D+++  + AG+ +  A   +  +              ++     G  
Sbjct: 155 KEREYRRLFPDFMDMLIVCLDAGMSLEAAANRVAREFVSKRKDFGLHLSIMMLEVRGGRR 214

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+++ +   + + E    + +     +LG ++++ L   S+ +RD + ++A+ +A S+
Sbjct: 215 LREALANLATRLRIDEARSLAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANSL 274

Query: 125 EAKASAWIIGSLPFCVSTLVYF 146
             K    +   L      +V  
Sbjct: 275 PIKMLLPLGAFLFPVSLVIVLV 296


>gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700]
 gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700]
          Length = 288

 Score = 74.3 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I 
Sbjct: 130 VNSILKSKIKKIMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVMLRIIR 189

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  
Sbjct: 190 KSEI-TGMSQALQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQLLTI 248

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 249 EEKLGTLAAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822]
 gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis]
          Length = 298

 Score = 74.3 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           + P  LD++     AGL +  A+          P+R    + +     G+   +++  + 
Sbjct: 155 ELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALA 214

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  V  +   ++     G +L   L  L+   R  ++ +A+  A+    K    +I
Sbjct: 215 ARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLI 274

Query: 134 GSLPFCVSTLVYF 146
             +  C   ++ F
Sbjct: 275 ACIFPCTFIVLAF 287


>gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 361

 Score = 74.3 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60
              +KR  +  +   + LD++   +  G+P+S ++  +    +    +  E   +     
Sbjct: 155 FRRRKRLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNLTNYPALADELLIMKRQAE 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +  SL  +++     +   EV   ++++S   QLG ++S  L + +   R  +   A +Q
Sbjct: 215 V-SSLKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRTARRQMATMQ 273

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           A       +  ++    F  + L+   SP +M +
Sbjct: 274 ANRTPVFLTFPLMFC--FAPAVLILLMSPSFMQL 305


>gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 296

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 2/157 (1%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           + A   +  ++      +  P+R+E   +      G  L E++      +          
Sbjct: 117 LGAAAGLEQSILAAAANAPAPIRAEVAELAANLKAGTRLDEALRTFAADLGDATGDLVVA 176

Query: 87  VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            + + S+    NL E L  L+R  R++     ++ A     ++S  II +  F V+ ++ 
Sbjct: 177 ALVLASRQQARNLGEVLGELARYAREQAAQSMRITADRARTRSSVRIIVAFVFAVAGVLV 236

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                YM    + P G ++L V A    +  M +  +
Sbjct: 237 GMDGSYMTP-YSSPAGQIVLAVVAGVFGVAFMWLHKI 272


>gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50]
 gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 298

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMV 73
           + P  LD++     AGL +  A+          P+R    + +     G+   +++  + 
Sbjct: 155 ELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALA 214

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  V  +   ++     G +L   L  L+   R  ++ +A+  A+    K    +I
Sbjct: 215 ARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLI 274

Query: 134 GSLPFCVSTLVYF 146
             +  C   ++ F
Sbjct: 275 ACIFPCTFIVLAF 287


>gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
 gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus
           gammatolerans EJ3]
          Length = 358

 Score = 74.3 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + + ++R A+     P  L  I   + AG+ +++A+  +          EF  ++     
Sbjct: 167 RMVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAKADYGVASEEFELIVRDMRA 226

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S  E++ R    M  + VS     I    + GGNL+E L  ++        MK     
Sbjct: 227 GASFEEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEILYKMAEDFAFEYRMKLVEYV 286

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153
             +   A  ++  ++      +V   +    +
Sbjct: 287 QKVNGIAFIYMFMTIVMPTMFIVAILAGSAFS 318


>gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
          Length = 324

 Score = 74.0 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 65/157 (41%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +      R  +  D+ P  +D++      GL +  ++ VI  +    +     EF R  +
Sbjct: 161 LARRKASRRHRLDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQ 220

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G    +++ R+ R    +++    T+++   + GG + E L      L++ +  + 
Sbjct: 221 QFASGRPREQTLLRISRLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRL 280

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           K +   +  K +  ++      ++ L+    PG+M+V
Sbjct: 281 KERVGKLTVKMTVVMV------LTLLIITAGPGFMSV 311


>gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
 gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
          Length = 288

 Score = 74.0 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 6/151 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65
                   P  LD++   V  G+ +  ++  +  +       +    R  +E   L + L
Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++      +P  E   F   +    Q G ++   LA L+  +R+   M  + +   M 
Sbjct: 200 EKALEEFYELVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMG 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           AK S  +I  +   +  L+   +PG + +L+
Sbjct: 260 AKMSIPLIAFIMVPIVVLI--AAPGILRMLM 288


>gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
 gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
          Length = 328

 Score = 74.0 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +++   KR A     +P+ALD+++  V +G  +  +   +  +       +  E      
Sbjct: 170 LRNAATKRQASIQRAWPDALDLLLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCA 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                     +   ++    L+ V    T ++   + G  +  AL  +++  RD +   A
Sbjct: 230 ELSYLPERRTAYDNLILRTDLEGVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAA 289

Query: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +A ++  K +   I+  LP  ++ ++   +   ++ +
Sbjct: 290 EKKAAALPPKLTVPMIVFFLPVLMAIILAPAAISMIDAM 328


>gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 314

 Score = 74.0 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
           FP+ALD++V    AG  ++  V  +  +      P+  E     +   L  ++SE+++  
Sbjct: 170 FPDALDLLVICTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHF 229

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +        +T ++   + G  +++AL  LSR  R  + +  + +A  +  K +  +
Sbjct: 230 ALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPM 289

Query: 133 IGSLPFCVSTL 143
           +  +   V  +
Sbjct: 290 MLFILPTVGLI 300


>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
 gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
          Length = 161

 Score = 74.0 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 49/98 (50%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I +R A+ L +FP+  +++  +VRAG   + A+  +   S   +  EF R++     G+ 
Sbjct: 3   ITRREARMLAEFPSLAELMALAVRAGESATGALERVCRTSQGDLAQEFARILGQTRSGVP 62

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           L+E+++   R   +  +  F+  ++V  + G  L+   
Sbjct: 63  LTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGVF 100


>gi|157283960|ref|YP_001468228.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151363102|gb|ABS06104.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 348

 Score = 74.0 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 72/182 (39%), Gaps = 2/182 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R  + L+   + ++ +  ++  G  + +A+      ++  +      +++      SL
Sbjct: 93  QARQIRKLEALASWVESLRDTISTGQALPEALPASALTAAPEIAEPLANLLDRMRARQSL 152

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSM 124
            +++  +   +   E       +++ +++ G  L+  L +L+   R +  ++ +++A   
Sbjct: 153 DQALLLLADDLDDPEADSVIGALAMNARVQGKRLNVVLTSLAESARKQLTIRREIEAGRA 212

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +     +      +   +   +  Y+    +   G ++L +       G+  +R + +
Sbjct: 213 SMRRGVTFVIITTCTLVIGMTVFNRDYVEP-YSTVTGQIVLAIVIGLFTAGLFWLRRLAD 271

Query: 185 FD 186
           F+
Sbjct: 272 FE 273


>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
 gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
          Length = 320

 Score = 74.0 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
             K R  +    FP+ L++IV +  AGL    A+  +  +       +  E  +++    
Sbjct: 163 RRKNRLGRIRHSFPDMLELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMA 222

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +      + ++M   +PL E+  F+  +    + G   S A+  L    R  + M  + +
Sbjct: 223 MTNDCRGAYAKMNLRVPLPEIGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEK 282

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  +    +  +I  +   V  ++    P  ++VL
Sbjct: 283 AARLPVLMTLPLIFCIMPAVFVVL--VGPAVLSVL 315


>gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 310

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 61/146 (41%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R ++ L + P   +++  +V AG   + A+  +V  +   + +E  R +    
Sbjct: 155 LGRQVAQRESRMLQEMPTVAELLALAVGAGEGATGALERVVRSTRGELTAELERTLADAR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  L+ ++  +     L  ++ F+  ++V  + G  L+E L   ++ +R+         
Sbjct: 215 AGAPLTAALDGLADRTGLAALARFAEGVAVAVERGTPLAEVLRAQAQDVREEVRRDLMET 274

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
               E      ++   LP  V+  V+
Sbjct: 275 GGRKEVAMMVPVVFLILPVTVAFAVF 300


>gi|218677457|ref|ZP_03525354.1| probable pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 67

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/67 (65%), Positives = 55/67 (82%)

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASA IIG+LPF V+TLVY TSP YM +L  DPRGH+++G++  +M IGI VMR
Sbjct: 1   ALSMEAKASAVIIGALPFIVATLVYLTSPNYMMILFTDPRGHLIMGISGIWMSIGIFVMR 60

Query: 181 LMINFDV 187
            M+NFD+
Sbjct: 61  NMVNFDI 67


>gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 297

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R  +   + P+A++++  +V AG  +  A+  +  + +     E  R++     G +
Sbjct: 144 AKQRQMQLNQELPDAIELLALAVGAGESLYMALERVASRCTQVTGEELTRLMAELKQGEA 203

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS S++        + +S     +    + G  L++ L       R      A+ Q L+ 
Sbjct: 204 LSMSLTSWRTRTESEVLSHLVDAVVSALERGSPLAQVLREQVADSRS----AARNQLLAQ 259

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNVLIN 157
             K   W++  + F +  L  V+   PG + + + 
Sbjct: 260 GGKKEVWMMIPVVFLILPLTVVFALYPGLVALQMT 294


>gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 367

 Score = 73.6 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  + L +FP   +++  +V AG     A+  +   +   + +E R  +    
Sbjct: 211 LTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRGELGTELRLALADAR 270

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+      K Q
Sbjct: 271 AGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDVRE----AGKRQ 326

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F +    +++   P  ++ 
Sbjct: 327 LLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVSF 362


>gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
 gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
          Length = 288

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 6/151 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSL 65
                   P  LD++   V  G+ +  ++  +  +       +    R  +E   L + L
Sbjct: 141 IKHISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELHSIDSNLAHVVRVTVERSRL-VGL 199

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++      +P  E   F   +    Q G ++   LA L+  +R+   M  + +   M 
Sbjct: 200 EKALEEFYALVPTSESQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMG 259

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           AK S  +I  +   +  L+   +PG + +L+
Sbjct: 260 AKMSIPLIAFIMVPIVVLI--AAPGILRMLM 288


>gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
 gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
          Length = 699

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 3/164 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R        P+ LD +     AG+ V ++V  +       +  E  R+     
Sbjct: 465 VQWAYRRRVKAIEAAVPDMLDRLASLNEAGMTVVESVRRVTNSDLGALNDELERMSRDIE 524

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   + ++ R+   +    V+   ++++      G++   L   +   ++ + ++ +  
Sbjct: 525 WGTDAATALRRVEDRIDTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQ-- 582

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
               E K    II    F    ++   S   +  L + P G+  
Sbjct: 583 -REDEMKTYLIIIYLSFFVFLVIIGALSAILVPALQDLPAGNAA 625



 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
            +    R  K        +       R+G+ +   +  +           +E    ++  
Sbjct: 160 SYRGNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARNRDVYGEAAAEVGVGVKAM 219

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKN 114
            L GL +  +I +M R  P ++   F   ++   Q G +L   L        R  +  + 
Sbjct: 220 DLFGLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKAEQE 279

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              ++ ++  E   S +++G L      ++ 
Sbjct: 280 AFLELLSVLAEGYVSLFVVGPLLLITILVIM 310


>gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
 gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
          Length = 261

 Score = 73.2 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +ALD++V  +R G     A+ V   ++   +      V     LG  +   +    R
Sbjct: 87  ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146

Query: 75  YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             P        +    +    G  ++  +    R + +R+  + +V++    A+A+A I+
Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             LP     L +      +  L++   G  LL V   F+  G++    + 
Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256


>gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 291

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 68/178 (38%), Gaps = 3/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +        +   +  G+ + +A+   +  + D +R E   ++      +S  +
Sbjct: 99  RIDKL-EALEEWTRGLAGVLTVGVGLEEALRATLRSTPDAIRPEVTTLVARLRARMSTED 157

Query: 68  SISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +        ++ +     + G  L+  L +L+  +      +  ++A   + 
Sbjct: 158 ALRAFADDLDDATGDLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKP 217

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +A+A  +  +   V  +++  S  Y+      P G +LL +  A  +  ++ MR M  
Sbjct: 218 RATARWVTIITLGVLGVLFIFSSEYLAP-YRTPAGQLLLALFLAIYVSLLIWMRAMAK 274


>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
 gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
          Length = 283

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58
           K +I  R  +  +D P  +DI+   V++G+ + + +  +   +      +     R I  
Sbjct: 124 KMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTETINPDISVLLARTIMK 183

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +   +SE++  +   +P QE+   ++ +    + G ++   L +LSR +R+ + +   
Sbjct: 184 MEV-SGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLLLDLSREIREMQLLAID 242

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144
            +  S+ AK S  +I  + F +  LV
Sbjct: 243 EKISSLAAKMSLPMIICIMFPILVLV 268


>gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
 gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
          Length = 288

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
             K+ T+      P+ALD++V  V +GL +      +  +       +  ++        
Sbjct: 130 RAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVGQEMYQICPELSRQWLITEVELR 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           L    S ++  +     + E+      +S   + GG++++ L  ++   R ++ +  + +
Sbjct: 190 LLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSIAQTLRLIATDSRQKQYLSLEEK 249

Query: 121 ALSMEAKAS 129
              + AK +
Sbjct: 250 VGKIPAKMA 258


>gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 266

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 8/179 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSES 68
           +F + L+ +  S  +G    +A A               + +E R +I      + + + 
Sbjct: 90  EFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNETRIIIAGMTNNIIIEDL 149

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +    +   L +V  F++      + GG++ + + +  +I+ D+  ++ +++ +  E + 
Sbjct: 150 LKDFAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDKIEIEMEIKTMLTEKEN 209

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              I+  +P  +   +     G M+   N     M+     A      ++ R ++N  +
Sbjct: 210 ELNIMMVMPLVIMITLSGM--GTMSAAANTAFSVMVKIFVIALFAGAYIMGRKIVNIRI 266


>gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 314

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64
           +  ++   FP+ +D+++  + AG+ +  A   +  +              ++     G  
Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKRQDFGLHLSIMMLEVRGGRR 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+++ +   + + E    S +     +LG ++++ L    + +RD + ++A+ +A ++
Sbjct: 216 LREALANLAIRLRIDEARALSVLFRQSEELGTSVTQTLRVYCKEMRDIRIVRAEEKANAL 275

Query: 125 EAKASAWIIGSLPFCVSTL 143
             K        LP      
Sbjct: 276 PVKM------LLPLGAFLF 288


>gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans]
 gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|297193034|ref|ZP_06910432.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719836|gb|EDY63744.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 278

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 1/158 (0%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAGL  + A+   VG + D +     RV+     G  + E++    R    + ++  + 
Sbjct: 117 LRAGLQPAQALLFAVGAT-DVLGDAEARVLAAARFGGDVPEALRSAARQPGAEGLAGVAA 175

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
              V    G  L+  L  L   LR   + + ++ A    A ++  ++  LP     + + 
Sbjct: 176 CWRVAVDGGAGLAAGLDRLEASLRAEMDQREELAAQLAGAWSTIVLLALLPVAGLAMGWA 235

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                ++VL + P G   L +       G+     ++ 
Sbjct: 236 LGADPLHVLFHSPAGIACLVIGGLLETAGLCWAGRIVR 273


>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
           SC2]
 gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
           SC2]
          Length = 292

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           +   ++KR  + L + P  L  ++  V AG  V  A+   V +       P+  E  + +
Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
                G S  ++   + +   +QEV+ F+T + +  + GG +   AL  LS+ L  ++  
Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ +        S+ ++  +   + T++       + ++
Sbjct: 255 ISRTRGEQA----SSKLVFPMALILLTVIVLVGAPALMMM 290


>gi|228943036|ref|ZP_04105537.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955918|ref|ZP_04117855.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976631|ref|ZP_04137074.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783100|gb|EEM31236.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228803745|gb|EEM50427.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816621|gb|EEM62745.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 304

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 65/180 (36%), Gaps = 1/180 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61
           +  KK      +     L+ +  +V     ++ A   ++     P++ +  R +      
Sbjct: 111 YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 170

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ++    V+    +++  F  ++ + S+ G +  + L N++   +D+K  +AK+++
Sbjct: 171 GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDDILLNIAHEFQDKKIYRAKLKS 230

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                + +      +   +       +     V     +G  +L       +     +  
Sbjct: 231 GMQPQRKTFKQTAIMLASLPVAALAINADDYVVFARTLQGRFILLAIIVVCIFSAFKIEK 290


>gi|284045233|ref|YP_003395573.1| type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
 gi|283949454|gb|ADB52198.1| Type II secretion system F domain protein [Conexibacter woesei DSM
           14684]
          Length = 281

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++   +     P     I  ++ AG  V  A+      +     +E         
Sbjct: 95  LHQRRRRYRVELERAAPAVARAIADALGAGHAVPGALVEAARGAEGAAAAELGAAAAALR 154

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G   +  + R+      +        I +Q + GG+L+  L  L+    +   +    +
Sbjct: 155 MGQPTAAVLERLRARADSRPYDTLVAAILLQREAGGDLATLLRELAAAQEESMRLLDDAR 214

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A + +A+ +  ++G +P   + L     PG + ++   P    L G A     + ++ +R
Sbjct: 215 ATTAQARFTGLVVGVMPIGAAALAELARPGALAMVAQVPLAAWLAGFAFFLQAVALVAIR 274

Query: 181 LMINF 185
            +   
Sbjct: 275 RLARV 279


>gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 288

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
 gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
          Length = 353

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R A+     P  L  +   + AG+ +++A+  +       +  EF  +I     G S 
Sbjct: 171 KHRVAEVERAMPYVLRHLASLLSAGVGIAEAILSVANSDYGVISEEFELIIRDMRGGASF 230

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+++R    M  + VS     +    + GGNLS  L  L+        M+       + 
Sbjct: 231 EEALTRFEERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVN 290

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             A  ++  S+      +V   +   MN  +  P   + + +   F  +  +++ ++
Sbjct: 291 GLAFVYMFISVVMPTMLVVAVLAASIMNKRLIMPIQGLAVVLLFGFPAMAFLMVVMI 347


>gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
 gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
          Length = 261

 Score = 72.8 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 1/170 (0%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
              +ALD++V  +R G     A+ V   ++   +      V     LG  +   +    R
Sbjct: 87  ALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRAEGR 146

Query: 75  YMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             P        +    +    G  ++  +    R + +R+  + +V++    A+A+A I+
Sbjct: 147 RSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATAVIL 206

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             LP     L +      +  L++   G  LL V   F+  G++    + 
Sbjct: 207 AGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256


>gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 321

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +V  +RAG   + A++    ++   + +E   V+     G  + E++ +         ++
Sbjct: 156 VVGELRAGWQPAQALSFAARETGA-LGAEEAAVLAAARFGGDVPEALRKAADQDGADGLA 214

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  L   LRD +  + +++A    A A+  ++  LP     
Sbjct: 215 GMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRERLRAELAGAWATVAVLAVLPLAGVA 274

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + VL++ P G   L V  A    G+     ++ 
Sbjct: 275 LGAALGADPLRVLLHTPAGLGCLVVGGALEAAGLWWAARIVR 316


>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
 gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
          Length = 282

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF----RRVIE 57
           K+++  R  K   D P  +D++   V++GL +  ++  +     D +   F     R+++
Sbjct: 126 KYIVNARIEKIERDMPLFVDLLAICVQSGLTIESSLKFLAENVGD-INDNFVPFLDRLVK 184

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L   ++ + + +P +EVS     +    + G ++ E L  LS  +R+ + +K 
Sbjct: 185 KIEVN-GLEAGLTHLQKELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKT 243

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     + AK S  ++    F V  ++   +PG M V+
Sbjct: 244 EEIIGKLSAKMSIPLVLFFMFPVVIII--AAPGIMRVM 279


>gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
          Length = 314

 Score = 72.4 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 59/142 (41%), Gaps = 3/142 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLS 64
           +  ++   FP+ +D+++  + AG+ +  A   +  +              ++     G  
Sbjct: 156 KEREYRRLFPDFMDMLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRR 215

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L E+++ +   + + E    S +     +LG ++++ L   S  +RD + ++A+ +A ++
Sbjct: 216 LREALANLATRLRIDEARALSVLFRQSEELGTSVTQTLRVYSNEMRDLRVVRAEEKANAL 275

Query: 125 EAKASAWIIGSLPFCVSTLVYF 146
             K    +   L      +V  
Sbjct: 276 PVKMLLPLGAFLFPVSLLIVLV 297


>gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 303

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R     ++FP   D++  +V AG   + A+  +V ++   +  E  RV+     G +
Sbjct: 150 VRRREQAMTEEFPAVADLLALAVAAGESPTAALQRVVARAHGELADELGRVLAEVRTGST 209

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + ++  R+     +  ++ F+  ++V    G  + + L   +  +R+     A+   +  
Sbjct: 210 IVQAFDRLAARTGVTSIARFAEGLAVAVDRGTPVVDVLHAQTADVRE----AARRHLMET 265

Query: 125 EAKASAWIIGSLPFCVST--LVYFTSPGYMNVLIND 158
             +    ++  + F +    +V+   PG + + +  
Sbjct: 266 GGRREVLMMVPVVFAILPVTVVFAFYPGLVGLHLTS 301


>gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01]
 gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01]
          Length = 290

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSES 68
                P  LD++   V  G+ +  ++  +  +     + +    +   E   + + L ++
Sbjct: 146 ISSRLPFLLDLMNVCVHTGMTLEASLEYLSNELKMVDENLAFVVQTTSERAKV-VGLDKA 204

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +S     +P  E   F   ++   + G ++   LA+L+  +R+   ++ + +   M AK 
Sbjct: 205 LSEFYDLVPTTEAQSFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKM 264

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           S  +I  +   +  L+   +PG M +L
Sbjct: 265 SVPMIAFIMIPIVILI--AAPGIMRML 289


>gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07]
 gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
          Length = 324

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G    +++ 
Sbjct: 170 DELPAMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQTLL 229

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  K + 
Sbjct: 230 RIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 288

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L    + L+    PG+M+V
Sbjct: 289 -VVMVLTLLPALLIITAGPGFMSV 311


>gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 292

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIET 58
           +   +KKR      DFP+ L+ +   + AG+ V  A   IV  +  +  +  E    +  
Sbjct: 136 LNEKVKKRRTSMQLDFPDFLNKLTLLINAGMTVQRAWEKIVTDNKKNSVLYEELSIAVAD 195

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G S   +     +   + E++ F +V+    + G   L   L   +    +   M+ 
Sbjct: 196 IRAGKSEMSAYEDFAKRCRIPEITKFVSVVLQNIKKGNTELVSILRLQASECWE---MRK 252

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +      E  ++  +   +   V+ L+  T P    +
Sbjct: 253 RAATRLGEEASTKMLFPMMIMFVAILIIVTVPAIFAM 289


>gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 289

 Score = 72.4 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  + KR           ++++  + +AGL   +A+  I   ++  +  E +R+ +  +
Sbjct: 131 IKRKVDKRKDILNATILYYVELLSTACQAGLNTENAIERIADNTNSILADEIKRIWKESY 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +  E+I  M++     EV  F   +    ++G  +++ L + +R +R R   K+++ 
Sbjct: 191 KTKTREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTPVTDILKDQARSIRSR--AKSEIV 248

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                AK        L    S L+   +P  + ++
Sbjct: 249 KKGELAKVKIVFPMILFLLPSVLLVALTPALITLM 283


>gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 298

 Score = 72.0 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R        P+  +++  +V AG  +  A+  + G +  P+ SE         
Sbjct: 143 LSIKARRRQRAIDAAVPDCAELLALAVAAGESIPAAIERVAGCAGGPLGSELALTSAHIR 202

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +V       ++  S  ++   + G  L+  L + +R  R+R       +
Sbjct: 203 NGTPSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEE 262

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVY 145
               E      ++   LP  V   +Y
Sbjct: 263 GGRREIAMLLPVVFLILPVTVMFALY 288


>gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 326

 Score = 72.0 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G S  ++
Sbjct: 170 LDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRSREQT 229

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  K 
Sbjct: 230 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKM 289

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++  L    + L+    PG+M+V
Sbjct: 290 T--VVMVLTLLPALLIITAGPGFMSV 313


>gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 252 LGTLSAKMSIPLILFIMFPIIILI--LAPGVMRVF 284


>gi|228968942|ref|ZP_04129890.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790749|gb|EEM38402.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 216

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 68/184 (36%), Gaps = 9/184 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HL 61
           +  KK      +     L+ +  +V     ++ A   ++     P++ +  R +      
Sbjct: 23  YKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLILYTED 82

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S+ ++    V+    +++  F  ++ + S+ G +    L N++   +D+K  +AK+++
Sbjct: 83  GKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKDTDNILLNIAHEFQDKKIYRAKLKS 142

Query: 122 LSMEAK----ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                +     +A ++ SLP          +     V     +G  +L       +    
Sbjct: 143 GMQPQRRTFKQTAIMLASLPIAALA----INADDYVVFARTLQGRFILLAIIVVCIFSAF 198

Query: 178 VMRL 181
            +  
Sbjct: 199 KIEK 202


>gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans]
 gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +V+ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKAKIKKIMNDLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  ++   +PG M V 
Sbjct: 252 LGTLSAKMSIPLILFIMFPI--IILTLAPGVMKVF 284


>gi|326331490|ref|ZP_08197780.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325950746|gb|EGD42796.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 238

 Score = 71.6 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 65/177 (36%), Gaps = 3/177 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + L+        +   +  G+ +  A+   +  +  P+ +E  R+        S  ++
Sbjct: 51  QIQRLEALEEWTRSLSGVLTVGVGLEQALIATLRSTPAPIVAEVNRLAARLRARWSTEDA 110

Query: 69  ISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +      +        +  + +   + G  L+  L  L+  +      + +V+A   + +
Sbjct: 111 LRAFADELNDATGDLVAANLILGARRRGAGLAAVLEGLAESVAADVRARRQVEADRAKPR 170

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A+A  +  +   V  ++  +   Y++     P G ++L       +  ++ M+ M N
Sbjct: 171 ATARWVTIISAVVIVVLAVSG-TYVDP-YATPLGQVILATLLGAYVGILVWMKRMAN 225


>gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 284

 Score = 71.6 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSL 65
             +     P+ALD++V  V +G  +      +  +    S  +  E+        +  S 
Sbjct: 131 RQEIAKHIPDALDLMVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTSTEMAVLDSP 190

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +++ +   + L E++     +S   + G  ++EAL  ++   R    ++ +     + 
Sbjct: 191 QVALTNLDARLALPEINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLELEEWVGKIP 250

Query: 126 AKASAWIIGSLPFCVSTLV 144
           AK S  ++  +   V  ++
Sbjct: 251 AKMSFPLVVFIMLPVVVII 269


>gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
 gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus
           assembly [Vibrio orientalis CIP 102891]
          Length = 288

 Score = 71.6 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66
                  P  LD++   V  G+ +  ++  +  +       +    R  ++   L + L 
Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRL-VGLE 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++      +P  E   F   +    Q G ++   LA L+  +R+   M  + +   M A
Sbjct: 201 KALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGA 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           K S  +I  +   +  L+   +PG + +L+
Sbjct: 261 KMSIPLIAFIMVPIVVLI--AAPGILRMLM 288


>gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
 gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
          Length = 329

 Score = 71.6 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 63/147 (42%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G    ++
Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQT 235

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  + 
Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ +L   +  L+    PG+M V+
Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320


>gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 348

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIE 57
           ++KR  + L D+P  +      V+AG+ V  A   I         ++  P   E R V  
Sbjct: 190 LQKRYEELLMDYPGLIMKFTLLVQAGMTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCY 249

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMK 116
               G+S SE+  R        +   F+T++    Q G   +++ L   S    + +  K
Sbjct: 250 EMESGVSESEAYRRFGERCGQAKYKTFATLLIQNLQKGSRQMADMLERESTEAWEERKRK 309

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A+V   +   K    +I  L   ++ ++    P +M+  
Sbjct: 310 ARVLGEAAATKLLVPMIMMLIVVMAIVMI---PAFMSFY 345


>gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 807

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 57/144 (39%), Gaps = 4/144 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L  +R  +     P  L+ +     AG+ V +++  + G     +  E  R+     +
Sbjct: 465 RELYTRRIRRIEASTPELLERLASLNEAGMTVVESLERVRGTDVGALSEEVDRIWADVTM 524

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G ++ ++++R  R +    +S   T++    +  G +   L   +   R    ++ + + 
Sbjct: 525 GANVEDALTRFGRRIRTTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQRR- 583

Query: 122 LSMEAKASAWIIGSLPFCVSTLVY 145
              +   +  ++  + F V  ++ 
Sbjct: 584 ---QEMLTYLVVIYISFLVFLVII 604



 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 14/181 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
           +     R     +     L  +    R G+    A+  +    +       E    +   
Sbjct: 158 RSRAAVRQRAIDEGQGRTLAFLYALSRGGVSFPAALRTLSDNREIYGASAEEVSVAVRQM 217

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L G  +  ++  M    P ++   F+  ++   Q G +LS  L       +D    + +
Sbjct: 218 DLFGQDMITAVRGMAGRTPSEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQE 277

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                +   A A++   +   +  +                 G  L        ++G ++
Sbjct: 278 EILEHLATVAEAYVTVLVAAVLFFITILL-----------VFGLTLADTLVFIQMVGYLM 326

Query: 179 M 179
           +
Sbjct: 327 I 327


>gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans]
          Length = 288

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +++ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 252 LGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284


>gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 329

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
             D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G S  ++
Sbjct: 176 MDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSREQT 235

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+ R    +++    T+++   + GG + E L      L++ +  + K +   +  + 
Sbjct: 236 LLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLTVQM 295

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  ++ +L   +  L+    PG+M V+
Sbjct: 296 TMIMVMTLLPAL--LIITAGPGFMGVM 320


>gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 288

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQH 60
           ++K +  K ++D    +D++  +++ G+ +  A+  +       +  +     R+I    
Sbjct: 133 ILKSKIKKIMNDLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSE 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   +S+++  +   +P  E+  F TV+      G ++   L  LS  +R+ + +  + +
Sbjct: 193 I-TGMSQALQDLSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEK 251

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ AK S  +I  + F +  L+   +PG M V 
Sbjct: 252 LGTLSAKMSVPLILFIMFPIIILI--LAPGVMRVF 284


>gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
           20546]
 gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
           20546]
          Length = 288

 Score = 71.6 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLS 66
                  P  LD++   V  G+ +  ++  +  +       +    R  ++   L + L 
Sbjct: 142 KHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRVTVDRSRL-VGLE 200

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++      +P  E   F   +    Q G ++   LA L+  +R+   M  + +   M A
Sbjct: 201 KALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNMMDLEERIGKMGA 260

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           K S  +I  +   +  L+   +PG + +L+
Sbjct: 261 KMSIPLIAFIMVPIVVLI--AAPGILRMLM 288


>gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
 gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus
           gammatolerans EJ3]
          Length = 303

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 6/182 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + KR  +     P+A   +  S+RAG+  S+A+  +       +  EF+RV+     G
Sbjct: 86  WRVSKRIEEMEKHLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTDEFKRVVGEIRKG 145

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++  M        V + S +I +   + G  +S+ L  ++  +R+   +K + +A
Sbjct: 146 RSTVEALKVMAVRNRKSPVVYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +        I       V   +  T    M +++  P    +  V      +G +V++ 
Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAKAQIPTVLNIL--LGFVVIQA 260

Query: 182 MI 183
           ++
Sbjct: 261 IV 262


>gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp.
           Ellin185]
          Length = 290

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           + +P+A+D +  +VRAGL + +A+  +     + +R +F              +S+  + 
Sbjct: 112 EAWPDAVDHVASAVRAGLSIPEALRQLSLHGPEVLREDFAAFARHDAAHGRFDDSLDVLK 171

Query: 74  RYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + +   +GG ++   L  LS  LR+  + +A++ A      ++A +
Sbjct: 172 ARLADPAADRLIESLRLARNVGGSDVGRLLRTLSSFLREDASTRAELAAKQSWTVSAARL 231

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + P+    +V F   G        P+G ++L   A    I  + M+ +   
Sbjct: 232 ALAAPWLALCVVGFRGEGL--AAYRTPQGVLVLVAGALVSWIAYVAMKAIGRL 282


>gi|29831150|ref|NP_825784.1| hypothetical protein SAV_4607 [Streptomyces avermitilis MA-4680]
 gi|29608264|dbj|BAC72319.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 209

 Score = 71.3 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG    +A+    G S   +      V+     G  +  +++        + + 
Sbjct: 44  LAGEVRAGRQPGEALLHAAGDSGG-LGDAQAAVLAAARFGGDVPGALADAAGQPGAEGLL 102

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                  V    G  L+  L  L   LR  ++ +A+++A    A+++A ++ +LP     
Sbjct: 103 GLGACWRVAVDRGAGLAAGLDRLEAALRAERDQRAELRAQLAGARSTAVMLAALPVLGLL 162

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        ++V+++   G   L   A     G+     ++ 
Sbjct: 163 LGTALGADPLHVVLHTGAGLACLLAGAVLEGAGLWWALRIVR 204


>gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 802

 Score = 70.9 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R  +     P  L+ +     AG+   +++  +       +  E  R+     
Sbjct: 461 VREIYSRRIDRIEAATPELLERLASLNEAGMSFVESLDRVRDSDLGVLTDEVDRIWTDIS 520

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G +  +++ R  + +    ++   T++    +  G L   L   S   R    ++ + +
Sbjct: 521 MGANSPDALRRFGQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR 580

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
               +   +  ++  + F V  ++ F
Sbjct: 581 ----QQMFTYLVVIYVSFFVFLVIIF 602


>gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
 gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
 gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 305

 Score = 70.9 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 71/182 (39%), Gaps = 3/182 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     K        +P+ +D ++  VRAG+ + + +  +       +++ F   +   H
Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              +L  S++ +   +           + + +Q+GG +L   L +L  ++R  +  +A++
Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A        A +    P+ +  ++          +   P G ++L   A   ++  ++M
Sbjct: 233 LARQSWTVTGARLAAVAPWLILAMLLAKDQTL--EIYATPTGSVILTSGAVVSVVAYLLM 290

Query: 180 RL 181
             
Sbjct: 291 LR 292


>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
 gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
          Length = 355

 Score = 70.9 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 3/179 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +     P  L  +   + AG+ +++ +  +       +  EFR VI+  H G S 
Sbjct: 173 RRRVEEVERSLPYVLRHMASLLSAGIGLAETMVSVAKSDYGVISEEFRMVIQEMHKGSSF 232

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++++    M    VS     I    + GGNLS+ L  ++        +K       + 
Sbjct: 233 EDALTKFEEKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYVQKIN 292

Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181
             +  +  +  +   +  +V      ++  LI D  G  ++ +    A   I I +++ 
Sbjct: 293 GISFVYMFMTVVMPTLLIVVILAGSIFVKRLIVDVTGLAVIFLMGFPALSFIIITIIKR 351


>gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1]
 gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1]
          Length = 305

 Score = 70.9 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 71/182 (39%), Gaps = 3/182 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +     K        +P+ +D ++  VRAG+ + + +  +       +++ F   +   H
Sbjct: 113 LNVKRSKIQNARGKAWPHVVDNLISGVRAGMSLGETLTKVATSVPPSLQAPFAHFVLDYH 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              +L  S++ +   +           + + +Q+GG +L   L +L  ++R  +  +A++
Sbjct: 173 ARGNLDGSLAMLKNELADPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEI 232

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A        A +    P+ +  ++          +   P G ++L   A   ++  ++M
Sbjct: 233 LARQSWTVTGARLAAVAPWLILAMLLAKDQTL--EIYATPTGSVILTSGAVVSVVAYLLM 290

Query: 180 RL 181
             
Sbjct: 291 LR 292


>gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 298

 Score = 70.9 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT    +    A+  I+  V +G+P+ +A+  +   +   +  EF+  +E    G+  +
Sbjct: 117 KRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIESGVPQN 176

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + R +P Q +     +I    + G +++  L  ++ +L  ++    K  A  +  
Sbjct: 177 DALDHLARRVPSQSLRRAIDIILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYAGELTP 236

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + A+++ S+      +  F   G +         +++      F + 
Sbjct: 237 MSMAYMLISVVVPSLGMSVFVILGSLAHFNTKAIIYIIPPFLLIFQIF 284


>gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1]
 gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
           KOD1]
          Length = 305

 Score = 70.9 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + KR  +     P+A   +  S+RAG+  S+A+  +       +  EF+R +   + G
Sbjct: 86  WRLTKRIDEIEKSLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKRTVAEINKG 145

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              ++++          +V + S +I +   + G  +S+ L  ++  +R+   ++ + +A
Sbjct: 146 RPTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKA 205

Query: 122 LSMEAKA----SAWIIGSLPFCVS--TLVYFTSPGYMNVLINDPRGHMLLGVA---AAFM 172
            +         ++  +G L   +    +   +SP    +   D    +L+      A   
Sbjct: 206 STGMQIMFFTITSGFVGPLILGIVTQVMSSMSSPELGIMFPMDSMTTILMAFVVVQAVLS 265

Query: 173 LIGIMVMR 180
            +G+ ++R
Sbjct: 266 GLGMGIIR 273


>gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
          Length = 289

 Score = 70.9 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   + +R      DFP+ L+ ++  V AG+ VS A    V  S     +  E R V+  
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G S + +         + E++ F + +      G   +   L   +    + +   A
Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           K        K    +   +   ++ ++   +P  +
Sbjct: 252 KRLGEEASTKM---LFPMMLMFIAVILIVATPAVL 283


>gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
           [Ralstonia solanacearum UW551]
 gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
 gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
           [Ralstonia solanacearum UW551]
 gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
          Length = 326

 Score = 70.9 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G    +++ 
Sbjct: 172 DELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLL 231

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ +    +++    T+++   + GG + E L      L++ +  + K +   +  K + 
Sbjct: 232 RIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 290

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L    + L+    PG+++V
Sbjct: 291 -VVMVLTLLPALLIITAGPGFVSV 313


>gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
 gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
          Length = 326

 Score = 70.9 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VI  +    +     EF R  +    G    +++ 
Sbjct: 172 DELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLL 231

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ +    +++    T+++   + GG + E L      L++ +  + K +   +  K + 
Sbjct: 232 RIAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMT- 290

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV 154
            ++  L    + L+    PG+++V
Sbjct: 291 -VVMVLTLLPALLIITAGPGFVSV 313


>gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 316

 Score = 70.9 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             + P  L+ +  S+ AG  + DA+  +    S  +  E  RV+     G+ ++ +   +
Sbjct: 173 QAELPTVLEFLALSLAAGEGLLDALRRVARVGSGELAMELGRVVADVGTGIPVTRAFDDL 232

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R + +  VS     ++   + G  L+E L   ++  R+     AK + L    +    +
Sbjct: 233 ARRLAMPAVSRLVDQLAGSLERGTPLAEVLRAQAQDARE----VAKRELLESAGRKEVGM 288

Query: 133 IGSLPFCVSTL--VYFTSPGYM 152
           +  L F +  L  V+   PG  
Sbjct: 289 LVPLVFLILPLTIVFALFPGIF 310


>gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 289

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIET 58
           +   + +R      DFP+ L+ ++  V AG+ VS A    V  S     +  E R V+  
Sbjct: 132 LSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEKSVTDSEKDTVLYQELRTVLAD 191

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G S + +         + E++ F + +      G   +   L   +    + +   A
Sbjct: 192 IRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGNAEMVSILRLQAAECWEMRKHAA 251

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           K        K    +   +   ++ ++   +P  +
Sbjct: 252 KRLGEEASTKM---LFPMMLMFIAVILIVATPAVL 283


>gi|302870514|ref|YP_003839151.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573373|gb|ADL49575.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 282

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 2/162 (1%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +++  ++ +   +  A+      +  P+R + + +      G  L +++      +    
Sbjct: 102 ELLRDTLSSAAGLEQAITATAPVTPQPIRPQVQALAGAVRGGARLPDALRAFAADLADPT 161

Query: 81  VSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                  ++  +   GG LS+ L +L+   R+   ++ +V       + +A +I      
Sbjct: 162 ADLVVRALTQAAGYHGGQLSQCLTSLAATARELAGIRMRVATKRAATRTAARVITGTSVA 221

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
           +   +   + G++        G ++L V  A    G   +  
Sbjct: 222 MVAGLILLNRGFLAP-YRSVTGQLVLLVVGAVFAGGFWWLAR 262


>gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 303

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R  +   + P+ ++++  +V AG P+  A+  +  + +D    E  +++     G S
Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAADNGDS 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ S++        + ++     I    + G  L+  L +     R      A+ Q L+ 
Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLASVLRSQVADSR----AVARTQLLTE 269

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154
             K    ++  + F +  L  V+   PG + +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFAMYPGLVAL 301


>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 291

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 1/135 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+ +++I  +V AG PV  A+   V   S P+    R  +   H G SL  ++S 
Sbjct: 148 LTAQLPDVIELIALAVSAGEPVRPAIERAVRSGSGPLIEHLRTTLAHVHAGKSLPAALSD 207

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +      Q VS F+  +    + GG L++ L N +R  RD        +    E      
Sbjct: 208 LSVRAGNQNVSRFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEEGGKAEISMMIP 267

Query: 132 IIGS-LPFCVSTLVY 145
           ++   LP  V   ++
Sbjct: 268 VVFLILPITVIFTIF 282


>gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3]
 gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 358

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 3/179 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +     P  L  +   + AG+ +++A+  +       V  EF  V++  H G S 
Sbjct: 176 KRRVEEVEKALPYVLRHMASLLNAGIGLAEAMVSVSKADYGVVSEEFAMVVQEMHKGSSF 235

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++++    M    VS     I    + GGNL++ L  ++        +K       + 
Sbjct: 236 EDALTKFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKIN 295

Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181
             +  +  +  +   +  +V      +M  L+ +  G +++ +        I IM+++ 
Sbjct: 296 GISFVYMFMTVVMPTLLIVVILAGSIFMKRLVINLSGMIVIFLLGFPTLSFIIIMMIKR 354


>gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 312

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++   K R      + P  +D++      GL +  ++A +   S      +  E R + +
Sbjct: 150 LESKAKSRGDAVNAEIPFFVDMLALLQGVGLSLEQSLASLAQTSEAGIPLLAGEMREMGK 209

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +G    E++ ++   +   +      ++    + GG++++ L + +  L++++ M  
Sbjct: 210 HIAIGRPRVEAMQKLAEQLGDPDFEELVNMLRQIERFGGDVAQPLRDFAGRLQEKRQMAL 269

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +   +  K +A +  ++   +  +
Sbjct: 270 RERVGKLNVKMTAVMTLTMLPALLLI 295


>gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 314

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK+R  +   +FP   D++  +V AG     A+  +   S   +  EF   +     G S
Sbjct: 163 IKRRATRMAREFPTVADLLALAVAAGESPIAAMERVARTSHGALPDEFAATVADIRAGTS 222

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +S++++ +    PL  +  F   +S+  + G  L+E L   ++  R+    K ++   + 
Sbjct: 223 VSQALASLGTRTPLDSLGRFGEGVSIAIERGTPLAEVLRAQAQDARE--ESKRELMETAG 280

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPG 150
           + +    +          +V+   PG
Sbjct: 281 QREILMLVPVVFFVLPLVIVFAIFPG 306


>gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
 gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus
           sp. AM4]
          Length = 303

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR  +   + P+A   +  S+RAG+  S+A+  +       +  EF+RV+     G
Sbjct: 86  WRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALEDLTTAKFGALTEEFKRVVGEIRKG 145

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++  M        V + S +I +   + G  +S+ L  ++  +R+   +K + +A
Sbjct: 146 RSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYVANDVREILRIKQERKA 205

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +        I       V   +  T    M +++  P    +  V      +G ++++ 
Sbjct: 206 STGMQMMFFIITSG---FVGPAIIGTVGKLMGIMVQGPAQAQIPTVLNIL--LGFVIIQA 260

Query: 182 MI 183
           ++
Sbjct: 261 IV 262


>gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 288

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQH 60
            IK          P  LD++   V  G+ +  ++  +  +       +       +E   
Sbjct: 136 RIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQMVDRQLARVVTLTVERAK 195

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + + L +++      +P  E       +    Q G ++   L+ LS+ +R+   M  + +
Sbjct: 196 I-VGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLSTLSKDIRELNMMDIEEK 254

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              M AK +  ++  +   +  L+   +P  M V+I
Sbjct: 255 IGKMGAKMTMPLVVFIMIPMLVLI--VAPKVMRVMI 288


>gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5]
 gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative
           [Pyrococcus abyssi GE5]
          Length = 308

 Score = 70.1 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 74/182 (40%), Gaps = 8/182 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I KR  +     P+A   +  S+RAG+  S+A+  +       + +EFRR +     
Sbjct: 88  NFRIAKRIEEMEKALPDAFFYLAGSLRAGVSFSEALEELATAKFGALTAEFRRTVAEMKR 147

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++           + + S +I +   + G  +++ L ++   +R+   +K + +
Sbjct: 148 GRPTVDALRAFALRNKKSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKERK 207

Query: 121 ALSMEAKA----SAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           A +         S   +G +   + + +  F +   M V +  P G + L +    ++ G
Sbjct: 208 ASTGMQMMFFLTSGGFVGPMIVAIVSRISEFVNTSGMQVQL--PSGELKLILWLFSVIQG 265

Query: 176 IM 177
            +
Sbjct: 266 FV 267


>gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54]
          Length = 246

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           ++   + R        P  LD++   V AGL    A+          P+R      +   
Sbjct: 89  LRAQGEARRRGIERGLPFMLDMMTLCVEAGLGAHAALQAAAANGPSGPLRDALAGALAQV 148

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+    +I  M        V  ++T ++    LG +L   L   +   R  ++M+A+ 
Sbjct: 149 RAGVPRVAAIQAMADRCGSPLVHRWATALAHADALGISLGPLLRAQAAHCRSERHMRAER 208

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYF 146
            A+    K    +IG +  C   ++ F
Sbjct: 209 LAMQAPVKMLLPLIGCIFPCTFLVLAF 235


>gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110]
 gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110]
          Length = 302

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQH 60
           L ++  A      P+ +D++V    AG+ +   +A +  + S    P+      +++   
Sbjct: 144 LKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARVAQEMSETNPPMARVLHCLLDDLR 203

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +  + S++  ++        +  F T+++   Q G  + +AL N++  LR  +  K + +
Sbjct: 204 ILPNRSDAFDKLG--TTSDGLRRFGTMVAQSLQYGTPVGQALRNIAVDLRRERITKLEER 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
           A  + AK +  ++  L   +  ++
Sbjct: 262 AHKLGAKLTIPMVLFLLPAMFVVL 285


>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
 gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
          Length = 298

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L   + RM   + +  +    + I    + G  L++ L   ++  R+      +V 
Sbjct: 206 SGDTLERCLKRMAAKLDIVSIDRAVSQIITAIERGTPLADILIKQAKEARN----ATRVA 261

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150
            +    K    ++  L F +    +++   PG
Sbjct: 262 LIEQAGKKEIAMMFPLVFFILPVTILFAIFPG 293


>gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 323

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I+ R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 167 LTRAIRAREDRMLMEFPTIAELLALAVTAGESPVGALERVARLTHGELGYELRLALADAR 226

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+      + Q
Sbjct: 227 AGATLVQALEGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVRE----AGRRQ 282

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNVLI 156
            L    +    ++  + F V    +++   P  ++   
Sbjct: 283 LLESGGRKEIAMMVPVVFLVLPTTVIFAFYPALVSFTF 320


>gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 309

 Score = 69.3 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 60/152 (39%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + +R  + +++FP   +++  +V AG   + A+  +   S   +  E  + +    
Sbjct: 154 LARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRGELSRELTQALGEAR 213

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  ++  +     +  V+ F   + +  + G  L++ L   +   R+         
Sbjct: 214 TGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLRAQATDAREAARQH---- 269

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150
            ++   +    ++  + F V    +V+   PG
Sbjct: 270 VIAEGGRREILMMIPVVFFVLPVTVVFAMYPG 301


>gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 313

 Score = 69.3 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K +            P+ALD++V    AGLP+  A+  +  + +     V +EFR   +
Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +     +          L  +    + ++   Q G ++++AL  LS  +R     + 
Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +   V  +V
Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299


>gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a]
 gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a]
          Length = 316

 Score = 69.3 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 160 LTRAIGEREDRMLLEFPTVAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  ++ F   ++V  + G  L++ L   +  +R+      K Q
Sbjct: 220 AGATLVQALEGIAARTALAPLTRFVDGMAVAIERGTPLADILRAQAMDVRE----AGKRQ 275

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F V    +++   P  ++ 
Sbjct: 276 LLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSF 311


>gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
           DSM 2375]
          Length = 305

 Score = 69.3 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  M  
Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW--I 132
            +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +      +  I
Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSGEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158]
 gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158]
          Length = 303

 Score = 69.3 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I++R  K +   P+ LD IVR V  G  V  A    +  + +P+RS    V     
Sbjct: 115 LASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQSALLTTEEPLRSCLDDVSRMLR 174

Query: 61  LGLSLSESISRMVRYMPLQE 80
            G+ +  ++  + +     E
Sbjct: 175 GGVEIDRAMMHVAKVYRTDE 194


>gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 313

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K +            P+ALD++V    AGLP+  A+  +  + +     V +EFR   +
Sbjct: 153 VKRMQAHYLRNVDQGIPDALDMLVICAEAGLPIEAAIGRVGREMTAVNRSVANEFRLTAQ 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +     +          L  +    + ++   Q G ++++AL  LS  +R     + 
Sbjct: 213 EMGVASDRRDVFLHFGERTNLSSMRRIGSALNQTLQAGSSVTQALRVLSVEMRKDALTEY 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +A  +    +  +I  +   V  +V
Sbjct: 273 EARAARLPVLLTLPMILFILPVVFLVV 299


>gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 316

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I +R  + L +FP   +++  +V AG     A+  +   +   +  E R  +    
Sbjct: 160 LSRAISEREDRMLLEFPTIAELLALAVTAGESAIGALERVSRLTHGELGRELRLALADAR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L +++  +     L  +  F   ++V  + G  L++ L   +   R+      K Q
Sbjct: 220 AGATLVQALEGIAARTALAPLVRFVDGMAVAIERGTPLADILRAQAVDARE----AGKRQ 275

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F V    +++   P  ++ 
Sbjct: 276 LLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVSF 311


>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
 gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
          Length = 298

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +KKR  K L++ P+A + +  SV AG  V DA+  I   S      E ++V+    
Sbjct: 146 LRRYVKKRKQKILNEMPSAFEFLSLSVSAGEGVLDAIKRICFISKGEFSIELKKVLIGVS 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L   + RM   + +  +    + I    + G  L++ L   ++  R+      +V 
Sbjct: 206 SGDTLERCLKRMAAKLNIVSIDRAVSQIITAIERGTPLADILIKQAKEARN----ATRVA 261

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150
            +    K    ++  L F +    +++   PG
Sbjct: 262 LIEQAGKKEIAMMFPLVFFILPVTILFAIFPG 293


>gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain
           protein [Methanobrevibacter smithii DSM 2374]
 gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain
           protein [Methanobrevibacter smithii DSM 2374]
          Length = 305

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 2/170 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  M  
Sbjct: 132 ELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALMEMSL 191

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW--I 132
            +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +      +  I
Sbjct: 192 RVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFI 251

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 252 AILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
 gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
          Length = 315

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R A+ + +FP   +++  +V AG     A+  +   +   + +E  R +    
Sbjct: 160 LTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVARSTQGELSAELGRTLADVR 219

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +++ ++  + R   L  VS F+  ++V  + G  L++ L   +           K +
Sbjct: 220 AGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLRAQAAD----ARDAGKRE 275

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPG 150
            +    +    ++  + F V    +V+   PG
Sbjct: 276 LMESGGRKEVAMMIPVVFLVLPVTVVFALFPG 307


>gi|146351305|ref|YP_001210532.1| putative typeII /IV secretion system integral membrane protein,
           TadB related [Arthrobacter nitroguajacolicus]
 gi|146218869|emb|CAL09940.1| putative typeII /IV secretion system integral membrane protein,
           TadB related [Arthrobacter nitroguajacolicus]
          Length = 290

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 66/162 (40%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +  G  +   + V +  + + ++ +   ++   +   S   ++      +      
Sbjct: 114 LSGLITTGAILEHVLQVSLRNAPEEIKPQVSNLVSRLNYRWSPPAALKAFADELNDATAD 173

Query: 83  FFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                + +  +  GG L++AL +L+ I+ D    + +++    + + +A ++  +     
Sbjct: 174 IVVAHLLLAYKIRGGGLADALDDLASIINDEVRHRREIETDREKPRTTAKLVTLITAVSL 233

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           T +   +  ++     +P G +LL +  A  ++ ++ MR M 
Sbjct: 234 TFMALFAGQFLAA-YKEPLGQLLLTIYLAGYVMILIWMRQMT 274


>gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii
           ATCC 35061]
          Length = 305

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 69/173 (39%), Gaps = 2/173 (1%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P AL  +   ++AG  + D +  +   +   +  EF+RV++    G S  +++  
Sbjct: 129 LNFELPYALRHMATELKAGKGLHDTLLTVSIANYGSLSGEFKRVLKEIKYGKSSEDALME 188

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +  + +S     I    ++GGNL+ +L  ++  +     +K K  +  +      +
Sbjct: 189 MSLRVSSEGLSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIY 248

Query: 132 --IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             I    P  +  ++   S    +++  +    M +      ++   + ++ M
Sbjct: 249 TFIAILAPVIILIMLMAASTVVGDIVSEEMVFIMYMFFFPLIVVFMALFIKRM 301


>gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp.
           AL-21]
          Length = 371

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R+ +   + P AL  +   +RAG+ + D++  +       +  EF R +E    G +  +
Sbjct: 191 RSNEASRELPFALRQMATELRAGIGMHDSMRSVALSGYGALSEEFARALEEIKYGETTEK 250

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ M   +  + +      I+     GG+L++ L  ++        MK K  +  + + 
Sbjct: 251 ALTDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNSF 310

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI--MVMRLM 182
              ++  ++   V T++   +   +   +  P   ++L +    M++     +++ +
Sbjct: 311 TMIYMFVAILGPVITMIMLIAASTVMGSVLPPMLLLILYLFLFPMIVAFMAFMIKRL 367


>gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 334

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIE 57
           ++   K R  + +++ P  +D++      GL V  ++ ++  +    +R    E     +
Sbjct: 170 LRSRAKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQ 229

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G +  +S  RMV      ++S    ++    + GG + E L   S  LR+++    
Sbjct: 230 LYNTGRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASF 289

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  S+  K +  ++ +L   +  LV    PG++ V+
Sbjct: 290 KEKIGSITVKMTGVMVLTLLPAL--LVITAGPGFLAVI 325


>gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 287

 Score = 69.0 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  +   
Sbjct: 111 WPDVVDHLVSAVRAGMGLPDAVASLAVAGPAVLRPAFRDFASVHRTTGSFAVALDELKDQ 170

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  ++GG  L + L  L+R LR+   ++++ +A       +A +  
Sbjct: 171 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLREEAAIRSEAEARQSWVVNAAKLGV 230

Query: 135 SLPFCVSTLVY 145
           + P+ +  L+ 
Sbjct: 231 AAPWIILALLS 241


>gi|119716451|ref|YP_923416.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119537112|gb|ABL81729.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 310

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 65/173 (37%), Gaps = 5/173 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISR 71
           L+        +   + AG  +  A+   +  +  P+  E   ++    +   S  + +  
Sbjct: 106 LEALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRA 165

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGN--LSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
               +        ++ + + +   G   LS+AL  L+  +      + ++ A   + + +
Sbjct: 166 FAEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTT 225

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           A  +  +   V  ++ FT   Y+      P G ++L V  +  +  ++ MR M
Sbjct: 226 ARTVTVITLGVLGMLAFTG-DYIEP-YGSPLGQVILAVLLSAYVATLLWMRRM 276


>gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 303

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R  +   + P+ ++++  +V AG P+  A+  +  + +     E  +++     G S
Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAADNGDS 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ S++        + ++     I    + G  L+  L +     R      A+ Q L+ 
Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154
             K    ++  + F +  L  V+   PG + +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301


>gi|134298693|ref|YP_001112189.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1]
 gi|134051393|gb|ABO49364.1| hypothetical protein Dred_0826 [Desulfotomaculum reducens MI-1]
          Length = 334

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 1/171 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++ +K+ +  P+A+ +I   +      + A+  +V +S +P RS FRRV+E  + G    
Sbjct: 155 QKRSKYTEQIPSAIRVISTVLEDTNDFTRALENVVERSPEPTRSLFRRVLERLNHGEQRK 214

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +    + + M        + V+    + G         L+        ++   + L + +
Sbjct: 215 KVFGLIPKAMGTGHSIMLANVLEEGYRHGVAALPMFNTLASQFDTMHKLELNNKVLLIPS 274

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           + S+ ++      +  L     P  M   I D  G  L+ +    M+I I+
Sbjct: 275 RFSSVLLHIGVVALVLLSTRLVPDAMK-YITDNIGKSLVVLCFVSMIINIV 324


>gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 300

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 4/152 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R  +   +FP  LD++V + +A   + +++ +    +    +  E  + ++   LG 
Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIDQTLKDVALGT 206

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E++ R+ R M  +EV      +      G N  E L   +R LR R+  KA   +  
Sbjct: 207 GMVEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295


>gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 295

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +   D P+  +++  SV AG  V  A+  +    S P+ ++ R  +     G  L +++ 
Sbjct: 152 EIAADLPDVAELLALSVGAGENVVAALERVSA-GSGPLCAQLRHSLGRVRTGTPLLDALV 210

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +     +   +     I+V  + G  L+E L   +   R+ +  +     L    +   
Sbjct: 211 DLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRR----LLETGGRREV 266

Query: 131 WIIGSLPFCVST--LVYFTSPG 150
            ++  + F V    +V+   PG
Sbjct: 267 QMMVPVVFGVLPVTVVFAVFPG 288


>gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 303

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R  +   + P+ ++++  +V AG P+  A+  +  + +     E  +++     G S
Sbjct: 154 ARRRQLRLNQELPDVIELLALAVGAGEPLYGALHRVSARCAGVAGQELEKILAAADNGDS 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ S++        + ++     I    + G  L+  L +     R      A+ Q L+ 
Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154
             K    ++  + F +  L  V+   PG + +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301


>gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
           20476]
 gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
           20476]
          Length = 205

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 7/157 (4%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
             K+R  +         P  +D +   ++AGL    A  +   +  D +     +     
Sbjct: 51  RRKRRQREASAAIERHVPEMMDAVALGMKAGLSFDSAFGLYHARFDDELARACAQAHTEW 110

Query: 60  HLG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G +S  ++++ M        +  F++ +S   + G ++   L  LS   +     + +
Sbjct: 111 ESGLVSREQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRME 170

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   +  +    +  ++    + L+    P  + +L
Sbjct: 171 EKVAKVPVRM--LMPTAMLILPAMLIVVLGPVMLELL 205


>gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 229

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-L 63
           ++KR    L   P  LD+++  + AGL    ++ +        +   F  V+  + LG +
Sbjct: 79  LQKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQGALADAFSAVMLQERLGIV 138

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  E++ ++ + M L  +S F + +    + G  L   LA  +  +RD +  + + Q   
Sbjct: 139 SKREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIRDAQRSELEEQIEK 198

Query: 124 MEAKA-----SAWIIGSLPFCVSTLVYFTSP 149
           +  K      +  +   L   V  L+   +P
Sbjct: 199 VPVKMLIPMGTLIVPAMLISIVGPLIASAAP 229


>gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
 gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
          Length = 237

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           + L  K     +   P+  D+I   + +G+P+  A+  +    SD +   E   ++    
Sbjct: 80  RQLALKNNKAIVRQLPDFCDLISMMIASGIPLISALEKVSASCSDLLLAREITSMLSRLR 139

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S ++S+  +      +++  +S+++    Q G +L+++L   +  LR      A+ +
Sbjct: 140 RGTSFAQSMYELSERYDAKQIHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKR 199

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY 145
           A     K    ++         ++ 
Sbjct: 200 AQEAPVKLLFPLVTCFFPVNFLVIL 224


>gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
           3_1_45B]
          Length = 297

 Score = 68.6 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  L ++R  +     P A+D++   +  G+ + +A   +  + +     V  EFR    
Sbjct: 140 LSELAERRQNRIRLFIPKAVDLLTICMSCGMSLEEAFDRVASEIARRAPEVAKEFRMTRY 199

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              L ++ + ++ R+     ++E+   +  +    Q G  L+EAL +++   R  +  + 
Sbjct: 200 EM-LVVNRTVALKRLEARSGVREMKILANSLLQSIQYGTPLTEALQSIAAEARAGQLSEL 258

Query: 118 KVQALSMEAKASAWIIGSLPFCV 140
           + +A  + A     +I  + F V
Sbjct: 259 EQKAGRISAVIGVPLIVLVLFPV 281


>gi|269128337|ref|YP_003301707.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313295|gb|ACY99669.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 331

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 74/183 (40%), Gaps = 2/183 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R    L+      + +  ++   + +  A+   V  ++  ++   R +++  H  + +
Sbjct: 95  ERRAMARLEALAAWTESLRDTIAGAVGLEQAIPSSVRAAAPALQQPLRTLVDRLHTRMPM 154

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSM 124
            E++ R    +           + + ++L G  L + L  LS   R   +M+ +V+A   
Sbjct: 155 PEALRRFADDLNDPSADLVVAALILNARLRGPGLRDMLTALSASARAELDMRRRVEADRR 214

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + S  ++  +    + L+   +  Y+    +   G M+L V  A      + +R +  
Sbjct: 215 ATRRSVNVVVGVSVGTALLLTIFNRSYVEP-YDGLLGQMVLCVVLALYAAAFLWLRRLAR 273

Query: 185 FDV 187
           +D+
Sbjct: 274 YDM 276


>gi|326330147|ref|ZP_08196458.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951960|gb|EGD43989.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 284

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 59/161 (36%), Gaps = 3/161 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +  G+ +  A+   +  +  P+  E   ++           +I      +      
Sbjct: 110 LSGVLTVGVGLEQALITTLRSTPKPIAGEVTNLVARLRSRWDTERAIRTFADELDDATGD 169

Query: 83  FFST-VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  +I    + G  L+  L +L+  + +    + +V+A   + +A+A  +  +   V 
Sbjct: 170 LVAAYLIRASRRRGAGLASVLEDLAVSVAEDVRARRRVEADRAKPRATARWVTIISASVL 229

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + FT  G        P G ++L +     +  ++ MR M
Sbjct: 230 VFLAFT--GSYVAPYGTPLGQVVLALLLTAYVATLVWMRQM 268


>gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 715

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 4/143 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K+R  +     P+ LD +     AG  V  +V  +   + + +  + +R       G  
Sbjct: 478 HKRRVRRIESAVPDFLDRLASVNEAGTSVVGSVRRVADSNLEALTDDLQRTRRDIDWGAD 537

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++ R+ R +     S    +I+   +  G++   L   +   R   +++ + +    
Sbjct: 538 VGTALRRLERRVRSPMTSRAVALITNAMRASGDVGPVLRIAADESRATWSLRRERR---- 593

Query: 125 EAKASAWIIGSLPFCVSTLVYFT 147
           +   +  I+  + F V   +  +
Sbjct: 594 QVMLTYLIVIYISFLVFLGIIAS 616



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +      R A+     P  +  +    R+G+P    +  +    +      +E    +  
Sbjct: 157 LDQRAHARGAEIDATLPRTVAFMYALSRSGMPFPRVMDTLAENEAVYGEAATELSVAVRD 216

Query: 59  QHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RK 113
            +  G     ++ R  R  P  +++ F+  ++     G  +S  L++   + ++    ++
Sbjct: 217 MNAFGTDALTALQRTSRRTPSDDLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQ 276

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAF 171
               ++ +   EA  +A + G L F    +V       + +++ D  P   +++ +    
Sbjct: 277 QQYLELLSTFAEAYVTALVAGPLFFITILVV-------IGLVLEDTLPLLRVVVYLGVPL 329

Query: 172 MLIGIMV 178
              G +V
Sbjct: 330 ATFGFVV 336


>gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 296

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R+       P ALD+ V  +  G  + + +  I  Q +DP+  E R  +     G + +
Sbjct: 147 QRSRLIYRRIPYALDLSVLVLETGGTLREGLEEISLQ-NDPLAEELRITLLEMDSGSTQA 205

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  M + + L+ +    T I+   + G  +   L   + + R+R+  + +  A+    
Sbjct: 206 AALRGMGQRVGLESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKMAVEAPT 265

Query: 127 KASAWIIGSL 136
           K +   +  +
Sbjct: 266 KMTFPNMMIM 275


>gi|300711546|ref|YP_003737360.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
           jeotgali B3]
 gi|299125229|gb|ADJ15568.1| type IV pilus biogenesis complex membrane subunit [Halalkalicoccus
           jeotgali B3]
          Length = 669

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 58/153 (37%), Gaps = 3/153 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                    + L  +  +   G+ + +++ V+   SS P+  EF  +      G SL +S
Sbjct: 449 RTAITGSLSDTLRKLSSANETGMTLLESIRVVAETSSGPLAREFEVIHAKVAYGTSLKDS 508

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++       +  ++    +IS   +    ++  L   ++   +R  ++ + ++ +   + 
Sbjct: 509 LTEFNNEYHIPRLARTVKLISKAQEASSQITAVLTTAAQASENRDEIERERRSRT---RM 565

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
              II      +  ++      +++V+     G
Sbjct: 566 QVVIILMTYLTLLAVMAILKTQFLDVMAGLDTG 598


>gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 750

 Score = 68.2 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             KR  K   +FP+ L  +  +V  G+ + D++ ++V   ++ +  E R++ +    G+ 
Sbjct: 528 KSKRQKKLDGNFPDFLKKLASTVETGMTLQDSIKLMVKTDNEGLSDETRKIWKDISWGME 587

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L++++ R    +  Q VS   T+I+  ++  G++ E L   +R     + MK +    SM
Sbjct: 588 LNDALVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRE---RSM 644

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                  II         ++Y  S  ++  +
Sbjct: 645 NMMIYIVIIYISYMVFVGVIYVISTTFLTEM 675



 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 15/185 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64
           R        P A+  +    + G+ + +    +     +      E   +I      G  
Sbjct: 214 RKRNIDSHLPYAVTFMYALSKGGMNIINVFDSLSRSSNTYGEASKEVETIIREMDYFGHD 273

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KNMKAKVQ 120
           L  +IS +    P          +      GG++S+   + S     +    +    +  
Sbjct: 274 LRTAISNVSEMTPSDRFQDLLHNLLTVIDSGGSISKYFQDKSDQYLKKAIDDQKGFLETL 333

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            L  E+  +A++ G L   +  +        M  ++      M+  V  A + IG ++  
Sbjct: 334 GLLAESYVTAFVAGPLFIIIMGI--------MMTVMGSGSILMVYAVIYAVLPIGSVMFV 385

Query: 181 LMINF 185
           +MI+ 
Sbjct: 386 VMISI 390


>gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1]
 gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus
           NA1]
          Length = 304

 Score = 68.2 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR  +     P+A   +  S+RAG+  S+A+  +       +  EF++ +     G
Sbjct: 86  WKITKRIEEMEKMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFKKTVAEIKKG 145

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++           V + S +I +   + G  +S+ L  +   +R+   +K + +A
Sbjct: 146 RSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRIKKERKA 205

Query: 122 LS-MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR--GHMLLGVAAAFMLI---- 174
            + M+        G +   +  +V           I  P      +L        I    
Sbjct: 206 STGMQVMFFIVTSGFIGPLILGIVSQVMGAMSTGEITFPIDTIKTILLGFVVLQAIVSGL 265

Query: 175 GIMVMR 180
           GI V+R
Sbjct: 266 GIGVIR 271


>gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 301

 Score = 68.2 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 66/184 (35%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + +    R  K    F      +   +RA   +  A+  +   +  P++      I    
Sbjct: 113 LDNRRSNRIYKLEQQFGAFTRDVSVYLRANPNLYRAIESVTEYAGQPLKQYLDAFIRRVE 172

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  + ES+ +      +  +S +   I        ++++   + +  +  +      + 
Sbjct: 173 SGEPIDESLKQFKTETNIDSISEWVDSIIFARMAKSDITDVCDHSADRINRKLVRGMNIH 232

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A+  + K +A+ +  L   +      +S    +++++   G M+L    A + I   ++ 
Sbjct: 233 AVLSKTKGAAFAMLGLIALMVVYTILSSAETKDLILSTGTGQMILIYVIASLFITTYIIM 292

Query: 181 LMIN 184
             I+
Sbjct: 293 KQID 296


>gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter
           ruminantium M1]
 gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter
           ruminantium M1]
          Length = 201

 Score = 67.8 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P AL  +   +RAG  + DA+  IV      +  EF RV+E    G +   +   
Sbjct: 25  ISKELPYALRQLSTELRAGKSLFDALDSIVDSDYGVLSREFSRVLEEIKYGETSENAFLN 84

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + +  + +S     I    ++G NLS +L  ++  +    +M+ K++  S +  A   
Sbjct: 85  LEKRVNSKALSRVIYEILASLRIGSNLSHSLNIIAEDV--NFDMRMKLKEYSEKLNAFIM 142

Query: 132 IIGSLPFCVSTLVYFT 147
           I   L      ++   
Sbjct: 143 IYTFLAILAPVIILTM 158


>gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5]
 gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 355

 Score = 67.8 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 70/179 (39%), Gaps = 3/179 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R  +     P  L  +   + AG+ +++ +  +       +  EFR +++  H G S 
Sbjct: 173 RRRVEEVERALPYVLRHMASLLNAGIGLAETMVSVAKSDYGVISEEFRMMVQEMHKGSSF 232

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++++     M    VS     I    + GGNL++ L  ++        +K       + 
Sbjct: 233 EDALASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKIN 292

Query: 126 AKASAW-IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIMVMRL 181
             +  +  +  +   +  +V      +   LI D  G  +L +    A  LI I++++ 
Sbjct: 293 GISFVYMFMTVVMPTLLIVVIIAGSIFAKRLIIDMAGLAILFLFGFPALSLIIIVMIKR 351


>gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
 gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
          Length = 309

 Score = 67.8 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 2/151 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            I +R        P+A   +  S+RAG+  S+A+  +       +  EFRR +     G 
Sbjct: 90  RITRRIEDMEKALPDAFFYLAGSLRAGVSFSEALEELASAKFGALTLEFRRTVSEIKRGR 149

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              E++           V + ST+I +   + G  +++ L  ++  +R+   ++ + +A 
Sbjct: 150 PTVEALRAFALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERKAS 209

Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYM 152
           +        +  G +   +  +V   + G +
Sbjct: 210 TGMQMMFFLVSSGFVGPFIVAVVSNIARGMI 240


>gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649]
 gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649]
          Length = 288

 Score = 67.8 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 3/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + AG+ +  A+   +  + DP+R E  R+        +  +++      +      
Sbjct: 111 LSGVLTAGVGLEQALIATLRSTPDPIRPEVTRLASRLRARWTTEDALRAFADDLDDATGD 170

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  + +   + G  L+  L  L+  +      + +++A   + +A+A  +  +   V 
Sbjct: 171 VVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADRAKPRATARWVTLITISVL 230

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             +  T   Y+      P G +LL +  +  +  ++ MR M 
Sbjct: 231 AFLALTG-QYVAP-FGTPLGQVLLVLLLSLYVATLVWMRRMT 270


>gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 311

 Score = 67.8 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 66/156 (42%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   + K+  + + +FP   +++  SV AG   + A+  +   +  P+ S+   V+    
Sbjct: 155 LTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKLAHGPLVSQLSGVLAETR 214

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G     +++ +     L+ ++ F   ++V  + G  L++ L   +  +R      +K Q
Sbjct: 215 AGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVLRAQAADVR----ALSKRQ 270

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F V    +++   PG + +
Sbjct: 271 LLESGGRKEIAMMVPVVFLVLPITILFALYPGLLAI 306


>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 299

 Score = 67.8 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH- 60
             + +++     ++ P AL I++ S+ +G  +++A+  +V  +   V   FR+VI     
Sbjct: 73  SMMYEQKIETLENNIPQALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEH 132

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +S  E+I+ +      + +   + ++    + GG+LS++L  L++ L D K+ K ++ 
Sbjct: 133 QKISFEEAITVVSTLYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLL 192

Query: 121 ALSMEA-KASAWIIGSLPFCVSTLV 144
           +++         I+  +   V+ L+
Sbjct: 193 SVTASGLAVGFIILCGVIPAVAGLL 217


>gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 300

 Score = 67.8 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
            + R  +   +FP  LD++V + +A   + +++ +    +    +  E  + ++   LG 
Sbjct: 147 AQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 206

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E++ R+ R M  +EV      +      G N  E L   +R LR R+  KA   +  
Sbjct: 207 GMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295


>gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein
           [Clostridium botulinum Ba4 str. 657]
 gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 308

 Score = 67.8 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 75/180 (41%), Gaps = 1/180 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +    F NAL  I   +R    +S+A+  +    + P++ EF  +I+      ++  
Sbjct: 127 RVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNVAYPLKGEFIYIIKEIDSNTNILN 186

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++      +    V+ +   +   +    N+S+     S  +R R     K+ A     K
Sbjct: 187 ALKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLNAKLSGLK 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + +I  +   ++ +++ +SP + + L ++P G +L  +      +  + +   IN +V
Sbjct: 247 FISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIFRKINKEV 305


>gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 301

 Score = 67.4 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
            + R  +   +FP  LD++V + +A   + +++ +    +    +  E  + ++   LG 
Sbjct: 148 AQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 207

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E++ R+ R M  +EV      +      G N  E L   +R LR R+  KA   +  
Sbjct: 208 GMIEALQRLERRMTAEEVIRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 267

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 268 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 296


>gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1]
 gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1]
          Length = 304

 Score = 67.4 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 63/183 (34%), Gaps = 4/183 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  +  +     L+ +    +AG+ +   +      +  P+    R + +    G+ 
Sbjct: 105 ASQRIERL-EALAQWLNHLAGVHQAGISLPQTIRASAKAAPGPIAPNVRALADRLRSGME 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123
             ++ +     +          +    +   G  LS+AL  L+  +  +      ++A  
Sbjct: 164 AEDAFAHFADELADGVADHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEADR 223

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + S+ ++  +  C+  +    +  + +     P G ++L +        +  +R + 
Sbjct: 224 AKVRKSSRMVS-MVICLVVVGCMLNDAW-SGWYKTPLGQLVLALLGGAFAWTLTWLRRIA 281

Query: 184 NFD 186
              
Sbjct: 282 RTK 284


>gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 274

 Score = 67.4 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ +D +V +VRAG+ + DAVA +       +R  FR          S + ++  +   
Sbjct: 98  WPDVVDHLVSAVRAGMGLPDAVASLAVAGPVVLRPAFREFASVHRTTGSFAVALDELKEQ 157

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +           + +  ++GG  L + L  L+R LRD   ++++ +A       +A +  
Sbjct: 158 LADPTADRILETLRMAREVGGTQLPDVLRGLARFLRDEAAIRSEAEARQSWVVNAAKLGV 217

Query: 135 SLPFCVSTLVY 145
           + P+ +  L+ 
Sbjct: 218 AAPWIILALLS 228


>gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 719

 Score = 67.4 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+R      + P+ LD +     AG+ V  ++  +      P+  E RR       G 
Sbjct: 490 LRKRRLKAIEREMPDFLDRMASVNEAGVTVVKSLHRLAQSDLGPISEELRRTWRDIQWGA 549

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           SL  ++    R   +  VS   T+I       G ++  L   +   +D
Sbjct: 550 SLRNALRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQD 597



 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 63/183 (34%), Gaps = 8/183 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           +    + R  +     P  +  I    R+G+P    +A +            EF   +  
Sbjct: 158 LDQRARARRVQIDAALPQTIAFIYALSRSGMPFQKVLATLTENQHVYGEAAREFGVAVND 217

Query: 59  QH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G  L  ++ RM    P Q +  F+  ++     G +LS  L       +     + 
Sbjct: 218 VQTFGTDLPTALRRMAERTPSQRLDDFTENLTSVLTSGQSLSAFLHEQYDRFQAESEAQQ 277

Query: 118 K--VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           +  ++ L+  A+    ++ + P  + T++        + L   P   +++ +      + 
Sbjct: 278 QQYLELLATFAEVYVTVLVAGPLFLITILVVVGLVMQDTL---PLLRVIIYLGLPLASVA 334

Query: 176 IMV 178
            +V
Sbjct: 335 FVV 337


>gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
 gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
          Length = 303

 Score = 67.4 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R      + P+ ++++  +V AG P+  A+  +  + +D    E  +++     G S
Sbjct: 154 ARRRQLSLNQELPDVIELLALAVGAGEPLYGALHRVSARCTDVAGQELEKILAAADNGDS 213

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ S++        + ++     I    + G  L+  L +     R      A+ Q L+ 
Sbjct: 214 LAPSLTAARARNDSEILAHLIDAIVSALERGSPLAGVLRSQVADSR----AVARTQLLTE 269

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNV 154
             K    ++  + F +  L  V+   PG + +
Sbjct: 270 GGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301


>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
 gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
          Length = 286

 Score = 67.4 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K+ A+F  + P  LD+   +++  LPV+ A+ +        +  E  R +    
Sbjct: 130 INDRAQKKKAQFESEIPRFLDLFQTAIKINLPVATAIKITAESIDGILSEELLRALVVTE 189

Query: 61  LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LG S   +S+  + +   +   S F   I    Q G +++E++   SR ++    + AK 
Sbjct: 190 LGTSNWQDSLYDIAQKYEVDSFSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKE 249

Query: 120 QALSMEAKASAWIIGSLPFC--VSTLVYFTSPGYMNVL 155
           QA    AK ++ I+  +     +  ++    P  M +L
Sbjct: 250 QA----AKTTSLILIPVVVFKMIPLMIILFLPVIMQIL 283


>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
           QCD-76w55]
          Length = 317

 Score = 67.4 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 4/182 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59
           K L  KR  K      + + II+   +    +S ++   +      +P+ SE ++ +   
Sbjct: 127 KTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGSEPLYSELKKSVVDI 186

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQS--QLGGNLSEALANLSRILRDRKNMKA 117
            LG+ + E +S + R    + +  FS    V S      +  + L        D + +K 
Sbjct: 187 DLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYEDNRIIKR 246

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++   M     ++I+      +     F S GY++ +IN+  G M L      +L+ + 
Sbjct: 247 DLRKEIMGPVRESYIMVFAIPVLMLYQSFVSDGYLDFMINEKIGQMGLTGIFVSILLCVW 306

Query: 178 VM 179
            +
Sbjct: 307 FI 308


>gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 672

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    ++R  K  + FP+ L+I+  + + G+P+ +A+ ++   S   +  E R V     
Sbjct: 443 LYERERRREQKINERFPDTLNILSSANQMGIPLVEALNLVSRWSEGVLGKELRMVRNDIR 502

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +  S+ +    + + +V+    +++  +    +LS+ ++  +   R+R  ++ K +
Sbjct: 503 WNHDVERSLLKFANRLDVPQVTRTMKLLAKGNHASSDLSKIISIAAEDTRNRYEIERK-R 561

Query: 121 ALSMEAKASAWIIGS 135
              M A  +  IIG 
Sbjct: 562 RNEMNAYMAIVIIGF 576


>gi|108801767|ref|YP_641964.1| type II secretion system protein [Mycobacterium sp. MCS]
 gi|119870918|ref|YP_940870.1| type II secretion system protein [Mycobacterium sp. KMS]
 gi|108772186|gb|ABG10908.1| type II secretion system protein [Mycobacterium sp. MCS]
 gi|119697007|gb|ABL94080.1| type II secretion system protein [Mycobacterium sp. KMS]
          Length = 262

 Score = 67.0 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +AL+++V  +R G     A     G+    V    R V     LG  ++  +    
Sbjct: 87  ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVSDSLRAVAARARLGADVAAGLHDTG 146

Query: 74  RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    +    G +++  +    R + +R+   ++  A    A+A+A +
Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRASAGMAGARATAAV 206

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP     L        + +L+    G  LL +       G++    + 
Sbjct: 207 LAGLPVLGICLGQMIGADPVRLLLGGGAGAWLLLIGVTLSCAGLLWSDRIT 257


>gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
 gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 67.0 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +KH  K R A   ++    + +I     AGL V  A+ V+  +       +  E    + 
Sbjct: 141 LKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRVVCQEGRGITPQLARELDLALA 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARGTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
          Length = 529

 Score = 67.0 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 3/141 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +  + FP+ L  +    + GL ++ A+  +       +  E +++ +    G+  S+ 
Sbjct: 277 KNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLATSEYGALNDEVKKMSDQLSWGIKFSDV 336

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---ALSME 125
           I +    +    V     +I+   + GG +S+ L   +   R+ K ++ + +      + 
Sbjct: 337 IKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSRELKFLEGERKRAIGSYIA 396

Query: 126 AKASAWIIGSLPFCVSTLVYF 146
              +++ +         +V+ 
Sbjct: 397 VIWTSYFVFLGVIVTLAVVFI 417


>gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
 gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
          Length = 290

 Score = 67.0 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            L  ++  K  + FP+ L  +  S R G+ ++D++ V        +  E +R+      G
Sbjct: 57  MLHTRKIKKMEERFPDFLRDVAESSRFGMTLADSIVVASSGKYGALTDEIKRMASKISWG 116

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           + + +++      +    +   + +I   ++ GGN+++ L+ ++R  R+   + AK + +
Sbjct: 117 VPVKDALLSFNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARES-QLAAKERNI 175

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            M      +++ +  F     +   +  ++  +
Sbjct: 176 EMFT--YGFVLLTSFFVFLATIIILNNSFLPEM 206


>gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
 gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
          Length = 302

 Score = 67.0 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 3/149 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I KR        P+A   +  S+RAG+  S+A+  +       +  EFR+ +     G
Sbjct: 83  WRIVKRIEDMEQMLPDAFFYLASSLRAGISFSEALEELTTAKFGALTEEFRKTVAEIKKG 142

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               E++           V + S +I +   + G  +++ L ++   +R+   +K + +A
Sbjct: 143 RPTVEALKAFALRNKKSPVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKA 202

Query: 122 LSMEAKASAWIIGSL--PFCVSTLVYFTS 148
            +        I      P  +  +    +
Sbjct: 203 STGMQTMFFIIASGFVGPLILGVVSQVIA 231


>gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 308

 Score = 66.6 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 76/180 (42%), Gaps = 1/180 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  +    F NAL  I   +R    +S+A+  +    + P++ EF  +I+      ++ +
Sbjct: 127 RVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNIAYPLKGEFIYIIKEIDSNTNILD 186

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++      +    V+ +   +   +    N+S+     S  +R R     K+ A     K
Sbjct: 187 TLKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLNAKLSGLK 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
             + +I  +   ++ +++ +SP + + L ++P G +L  +      +  + +   IN +V
Sbjct: 247 FISIMIMIILLGMAFMMFGSSPEFKDFL-HEPFGRVLALITGISYTVTTVFIFRKINKEV 305


>gi|297564240|ref|YP_003683213.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848689|gb|ADH70707.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 211

 Score = 66.6 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--ISRMVRYMP-L 78
           ++   +RAG P  +A+ +   ++   V               SL+++  + R     P L
Sbjct: 54  VLAAELRAGQPPEEALRISAAEAGPLVG--------------SLTDAASLRREAEREPDL 99

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +++ +    V +  G  L+E +  L+  L +++  + +  A +   + +A ++ +LP 
Sbjct: 100 WALAYLAVCWEVAADTGAGLAEVVDALAANLTEQEEQRTEAAARTTGPRTTAIVLAALPA 159

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        +  L   P G   L    A   +G      M+ 
Sbjct: 160 VGLLLSSGLGGSPLVFLFTTPLGLACLVGGVALDALGTWWTLRMVR 205


>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 299

 Score = 66.6 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62
           L + +  K  ++ P AL IIV ++ +G  +++A+  +V  +   V   F RV+       
Sbjct: 74  LYESKMEKLEENLPKALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQK 133

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  ++++ +  +   + +     ++    + GGNLSE L  L++ L D +  K ++ ++
Sbjct: 134 LSFEDAMTIVSTFYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSV 193

Query: 123 SMEAKASAWIIGSLPF 138
           +  + A  +I+  L  
Sbjct: 194 TANSLAMGFIMICLVV 209


>gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42]
          Length = 300

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R  +   +FP  LD++V + +A   + +++ +    +    +  E  + ++   LG 
Sbjct: 147 MQDRKERISREFPYFLDLVVMTQQAQATLPESLRLYAEAAPGTVMSEEIEQTLKDVALGT 206

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            + E++ R+   M  +EV      +      G N  E L   +R LR R+  KA   +  
Sbjct: 207 GMIEALQRLEARMTAEEVVRVIRAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEK 266

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++AK    ++ ++   VS L+   +P  + ++
Sbjct: 267 LKAKI---VMPAMMIVVSILLLVLAPAIVEMM 295


>gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
 gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
          Length = 402

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 9/151 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+    + +  +P  +  +     AGL +  A+  I          E  R       G+ 
Sbjct: 260 IRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARNEP-----EAERCCYEMENGVL 314

Query: 65  LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++ +R        E    + +++  Q + G  LSE L   ++   + +  +A+V    
Sbjct: 315 EQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRARVLGEK 374

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              +    ++      +  L+    P ++  
Sbjct: 375 AAVRM---VLPMGMMLLIVLIIVMVPAFLTF 402


>gi|297161945|gb|ADI11657.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 304

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 66/179 (36%), Gaps = 2/179 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + ++      +++  ++ A   +  AV      +   +R E   +  +   G SL  
Sbjct: 105 RRTERMEALALWTEMLRDTLSAAAGLEQAVLTTADIAPSALRRELGDLAVSVRSGQSLPA 164

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126
           S+      +           + + +Q   + L+  L  L+  +R++  M+ ++ A     
Sbjct: 165 SLRSFADEVDDPLADVVVAALVMAAQRQASQLAALLGELADSVREQVAMRQRIDAGRASI 224

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +A   +  ++   ++  +   +  Y++   N   G ++L +  A   +    +  +   
Sbjct: 225 RAGVRVTVTVTLGMAVGLTVFNRPYLDP-FNTLSGQVVLAIVGALFALSFTWLTAIGRL 282


>gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
 gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
          Length = 305

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I KR  +     P+A   +  S+RAG+  S+A+  +       +  EF R +     
Sbjct: 85  NFRIIKRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 144

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++           + + S +I +   + G  +++ L  +   +R+   +K + +
Sbjct: 145 GRPTVDALRAFALRNKRSPIIYRSMMIIIEALERGAPMADVLVAVGNDVREILRIKNERK 204

Query: 121 ALSMEAKA----SAWIIGSLPFC----VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           A +         S   +G         ++  +  ++ G    + +      L  +   F+
Sbjct: 205 ASTGMQMMFFLTSGGFVGPFIVAVVSNIAKFITLSNAGIQIPVSDLRIILWLFSIIQGFV 264

Query: 173 L-IGIMVMR 180
             +GI V+R
Sbjct: 265 TGVGIGVIR 273


>gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 297

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           +  L   R      +FP  LD++   + +GL +      I     +++  + +  RR++ 
Sbjct: 134 LHFLKGVRQRAITAEFPFLLDLLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVF 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+S   ++ R      +      +++       G  L+ AL   +R   +R+   A
Sbjct: 194 DLDRGMSYDAALGRWAERTAVGGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHA 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           +     +  +    +I      +  +V
Sbjct: 254 RESIGRISVQMVLVLIACFLPAIFIVV 280


>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
 gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 299

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+    +  
Sbjct: 75  LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  ES++ +      + +   + ++    + GG+LS++L  L++ L D K  K ++ ++
Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSV 194

Query: 123 SMEA-KASAWIIGSLPFCVSTLV 144
           +         I+  +   V+ L+
Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217


>gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
 gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM
           44233]
          Length = 302

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 6/172 (3%)

Query: 18  NALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +AL     S+R   AG   + +A+      +S  +R    R++      + +  ++  + 
Sbjct: 103 DALVAWTESLRDTIAGHHSLENALPSSAVHASPLIRPALLRLVGQIRARVPVDRALVMLA 162

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++  G+ L + L++L+   R+   M+ ++ A   E +    I
Sbjct: 163 DELNDPSADLVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFADRAEIRRGTQI 222

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           I  +    + L+      Y+    +   G ++L +           +R + +
Sbjct: 223 IVVVTVVFAGLLVVFGGDYVRP-YSTLSGQVVLAIVVGIFAAAFAWLRRLAD 273


>gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
           16841]
 gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
           16841]
          Length = 415

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 14/160 (8%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRV 55
           K+R  K   ++P  +  +   + AG+ +  A   I    S+          P+  E    
Sbjct: 258 KRRKEKLQSEYPELVSKLTILLGAGMTLFSAWNKIATSYSNKRKNNTIPIHPLYEEMLIT 317

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKN 114
                 G+  + +  R      L     F +++    + G   L + L        + + 
Sbjct: 318 CHEIESGVGEARAYERFGERCGLHRYRKFCSLLVQNLRKGTRGLVQLLEQEVSDAFEERK 377

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             AK        K        + F +  ++    P ++++
Sbjct: 378 NLAKKSGEEAGTKM--LFPMMMMFGIIIVIIMV-PAFLSL 414


>gi|72160531|ref|YP_288188.1| integral membrane protein [Thermobifida fusca YX]
 gi|71914263|gb|AAZ54165.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 250

 Score = 66.3 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 4/180 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++R         +    I   +R G     A+A  +  +   + +E          G 
Sbjct: 66  LARRRLR----GCADVCRAIAAELRCGSSPGKALAAALRGADPLIAAELAEAAVLAEAGH 121

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               ++    R       +  +    V +  G  ++  +  L+  L  +  +  ++    
Sbjct: 122 DPVPALRAASRRPGGTAWASLAVCWQVAASSGTGVAAVVERLADALAHQDALHRELDIHL 181

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +A ++  LP     +        +  L   P G   L    A    G+   R ++
Sbjct: 182 AGPRTTAVLLAGLPIAGLLMASALGGAPLLFLFTTPLGWGCLCAGIALNAAGVWWTRRLV 241


>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 301

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V + F++V+       
Sbjct: 77  LYENKMETLENNIPQALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQK 136

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  E+++ +      + +   + ++    + GGNL+++L  L++ L D +  K ++ ++
Sbjct: 137 ISFEEAMTIVSNLYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSV 196

Query: 123 SMEAKASAWII--GSLPFCVSTL 143
           +    A  +II  G +P   + L
Sbjct: 197 TASGLAVGFIILCGVIPAVAALL 219


>gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
 gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
          Length = 153

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 62/149 (41%), Gaps = 4/149 (2%)

Query: 3   HLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
            L +KR     L + P  LD+I   + +GL    ++ +     +  +   F+R +    L
Sbjct: 1   MLTRKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRL 60

Query: 62  GL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G+ S   ++  +   + +  ++ F++ +    + G  L   L++ ++ +RD +  + + +
Sbjct: 61  GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
              +  K    I   +    + L+    P
Sbjct: 121 IEKIPVKM--LIPMGVLIVPAMLISIMGP 147


>gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5]
 gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5]
          Length = 295

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 69/179 (38%), Gaps = 3/179 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +L +  T       P     +  +VR+GL + +A++ +       V    R+V+    +G
Sbjct: 75  YLNRSFTRSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGGEVGKMLRQVVLLTEMG 134

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           ++  E+I+R      L  +    +++    + GG + +AL   ++I    ++ + +    
Sbjct: 135 VTFQEAIARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQIFGAIRSYEEERATT 194

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL---GVAAAFMLIGIMV 178
                 + +    L   +S  + +     ++ L   P     +     AA     G+M+
Sbjct: 195 INPHVLTIYAATILYVILSLTILYVFVMPLSRLQGIPGALGKINPGVYAAVMYYSGVMI 253


>gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 328

 Score = 65.9 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 4/145 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           +   +   K  +  PN L  I    RAGL +  +V  +       +  E R +  +   G
Sbjct: 106 YRKARYINKVEEYLPNFLRDIAEMSRAGLTLPASVETVAKGEYGEMTKEIRMMDASLSWG 165

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +S  +++    + M    ++    +I+  ++ GG +S  L   +R   + K ++ + +  
Sbjct: 166 ISFEDTLENFGKRMNTHLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRGN 225

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFT 147
                    +I  + F V   V   
Sbjct: 226 MA----VYVVISYMSFFVFIFVILM 246


>gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 268

 Score = 65.9 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 23/170 (13%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------------------ 46
           +++R    +   P+ L  ++  V AG  V  A+        D                  
Sbjct: 101 MERRRQDMVLALPDVLGKLMLLVGAGETVQRAIIRCADGREDVTGSSINKGKKRKKAKLE 160

Query: 47  -PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALAN 104
            P+  E+ R+I +   G S ++SI    R   +QE S F+TV+ +  + GG+    AL  
Sbjct: 161 HPLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATVVLLHYRKGGDRFVLALKE 220

Query: 105 LSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           LS  L +++   A+++     +K    +          L+   +P  + +
Sbjct: 221 LSFSLWEKRKATARMRGEEASSKL---VFPLAGIFFLLLIAVAAPAVLMM 267


>gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
 gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
          Length = 355

 Score = 65.9 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 3/180 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++R A+     P  L  I   + AG+ +++A   +       +  EF  +++  H G S 
Sbjct: 173 RRRVAEVEKALPYVLRHIASLLSAGIGIAEAFVSVAKADYGVISEEFYLIVQDMHKGASF 232

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++S+    M  + V+  +  I    + GGNL++ L  ++        +K       + 
Sbjct: 233 EDALSKFEMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKIN 292

Query: 126 A-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                   +  +   +  +V          L+    G + + + A  ML   ++M  MI 
Sbjct: 293 GLSFVYMFLSVIMPTLFIVVILAGSILSRTLVISIPGLVAIMLFAFPML--SLIMITMIK 350


>gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
 gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus MO6-24/O]
          Length = 292

 Score = 65.9 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRM 72
            P  LD++   V  G+ +   +  +  +       +       ++   + + + +++   
Sbjct: 150 LPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGIEKALEEF 208

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              +P  E   F   +    Q G ++ + L  L+  +R    M+ + +   + AK S  +
Sbjct: 209 YEMVPSSEAQSFVMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPM 268

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
           I  +   V  ++   +PG M +L +
Sbjct: 269 IVFIM--VPIIILIIAPGIMRMLTD 291


>gi|33867074|ref|NP_898632.1| TadB-like protein [Rhodococcus erythropolis]
 gi|33668908|gb|AAP73902.1| TadB-like protein [Rhodococcus erythropolis]
          Length = 295

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 60/178 (33%), Gaps = 7/178 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R           +  +   +  G  +  A+        + + +E  R+I+       + +
Sbjct: 96  RLNAME----EWVRNLSGVLAVGTGIEQAIIATHKAMPEALTTEISRLIQRLRTNTPIID 151

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +           +   + + G+ L+  L  LSR + +    +  V+A    +
Sbjct: 152 ALRGFADDLDDATGDLIVGSLIQSAAIRGSGLTAVLDRLSRSVAEDVRNRRAVEAARKGS 211

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +A  +  +    +  ++             P G ++  V  A  +  ++ M+ +I 
Sbjct: 212 RTTARWVTIITIGFTVGLFLF--TDYMTFYKTPAGQLIFLVQIAGFIACLLWMKKLIQ 267


>gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 233

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 50/108 (46%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT    +    A+  I+  V +G+P+ +A+  +   +   +  EF+  +E    G+  +
Sbjct: 117 KRTKLIEEQVVFAIREIMIKVGSGVPIFNALLDVANGNYGIISDEFKLAVEEIESGVPQN 176

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +++  + R +P Q +     +I    + G +++  L  +  +L  ++ 
Sbjct: 177 DALDHLARRVPSQSLRRAIDIILYAIKSGSDIAGTLELIHDMLIKKQQ 224


>gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC
           49626]
 gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC
           49626]
          Length = 248

 Score = 65.5 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +  I  +    + + P  LD++   + +GL    ++ +   + S  +  +  + + +  +
Sbjct: 93  RKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCNRCSGVLSEKMSQALLSWQM 152

Query: 62  GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G +  S ++  +     +  +  F++V++     G  LS++L   +  +RD +    + +
Sbjct: 153 GATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDSLERQAGTIRDDQRAALEAE 212

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
              +  K        LP     +     P  +  ++    G  L
Sbjct: 213 IEKVPVKM------LLPLGTLIV-----PAMLIAILGPLLGPAL 245


>gi|256397694|ref|YP_003119258.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363920|gb|ACU77417.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 291

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 57/178 (32%), Gaps = 2/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R     +      +++  ++ A   +  AV      + + +  E R +         L+ 
Sbjct: 94  RELARTEAVATFTEMLRDTLSAASGIGQAVRSSCAAAPEAIAGEARGLARRIDDQQDLAA 153

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +           +    +    +L+  L +L+   R     + + QA  ++ 
Sbjct: 154 ALVTFADELRDPTADIVVVCLVHAIRNSAQDLAGLLGSLAVTARTLAAQRKRAQAARVQV 213

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + S  I+  +   +   ++     +++       G  +L    A    G + +  M  
Sbjct: 214 RTSVRIVTCVTAGMLAGLFVLDRSFLSP-YGSASGQFVLACGLALFAAGYVWLWRMAK 270


>gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis
           DSM 15434]
 gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis
           DSM 15434]
          Length = 218

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++H ++ R  + ++ +P A+D++  ++  G+ + +A++ +       +R  FR    +  
Sbjct: 30  LRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAEAGPPALRPAFRAFALSYT 89

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119
           L   L E++ R+   +          ++ +  + G   L+ AL  LS  LR  +  +  +
Sbjct: 90  LSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERASRRLM 149

Query: 120 QALSMEAKASAWIIGSLPFCVSTLV 144
            +        + ++  +P+ V   +
Sbjct: 150 VSSLAWGARGSCLLAFVPWLVIGAL 174


>gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 309

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIET 58
           +    +KR      D P  L+++     AGL    A+  I     +  P+ SEFR     
Sbjct: 141 VNRSRQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRIQSTRLAVRPLASEFRSYQAD 200

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
              G   ++S+ R+   + +  +S F + +    QLG  +++ L
Sbjct: 201 LLAGRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMGIAQVL 244


>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 299

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62
           L + +     ++ P AL I++ ++ +G  +++A+  +V  +   V   FR+V+    +  
Sbjct: 75  LYENKIETLENNIPQALYIMILALESGRSINEALLEVVKSNIKEVSDIFRKVLYLMENQK 134

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  ES++ +      + +   + ++    + GG+L+++L  L++ L D K  K ++ ++
Sbjct: 135 LSFEESMTIVSNLYDSKVLRMLARIMIENRKYGGDLADSLKILAKTLEDFKMYKKQLLSV 194

Query: 123 SMEA-KASAWIIGSLPFCVSTLV 144
           +         I+  +   V+ L+
Sbjct: 195 TASGLAIGFIILCGVIPAVAALL 217


>gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
 gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
          Length = 741

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +R  K   + P+ L  +  +   G+ + D++ ++  + +D +  E ++V      G++
Sbjct: 520 KNRRKKKLEQNIPDLLKKLASTNETGMTLQDSIKLMSRKETDTLSKEIKKVWRDISWGVN 579

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +++S+ R    +  Q V+   T+I+  ++  G++ + L   SR     ++MK + +++SM
Sbjct: 580 INDSLVRFANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRE-RSMSM 638

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                   I  L F    ++Y  S  ++  +
Sbjct: 639 MIYIVIIYIAFLVFV--GVIYVISTTFLTEM 667



 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLS 64
           R        P A+  +    R G+ + D    +     +   V  E   +++     G  
Sbjct: 206 RKNNIDQQLPYAVTFMYALTRGGMNILDVFKSLAKAEDTYGEVAVEVDTIVKDMEYFGHD 265

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQ 120
           +  +++ +    P          +      GG++++   + S     +  +      +  
Sbjct: 266 IRTALANISSTTPSDRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSMVDQKGFLETL 325

Query: 121 ALSMEAKASAWIIGSL 136
           AL  E+  +A++ G L
Sbjct: 326 ALLSESYVTAFVAGPL 341


>gi|134298819|ref|YP_001112315.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
 gi|134051519|gb|ABO49490.1| hypothetical protein Dred_0955 [Desulfotomaculum reducens MI-1]
          Length = 330

 Score = 65.1 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 70/180 (38%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  K++  FP  +   + ++        A++ +  ++ +P +S F+ ++     G    
Sbjct: 150 RKQEKYISQFPIVVRTFLVALEQKGNARSAISYVAERAPEPSKSLFQTILLKIDSGFEPK 209

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++  + + + +     F  +++     G  L      L+  +     +  +    +   
Sbjct: 210 LALKEITKEIKVSHAHLFEQLLADAYYQGTTLIPQFTRLAGQVDAMNELILENAQTTHAG 269

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +   +I+  L   ++ ++    P     L  +  G  ++ +    +LIGI+  R+M   D
Sbjct: 270 RIQNFIMHFLVVILAVMLVRVLPESEKYLTQEIGGRTIVLLTFLSVLIGIIFDRMMSKVD 329


>gi|120406354|ref|YP_956183.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
 gi|119959172|gb|ABM16177.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
          Length = 260

 Score = 65.1 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 1/166 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           ALD+++  +R G     A+     +S   +      V     LG  ++  +    R   L
Sbjct: 90  ALDVLIGELRVGAHPVAAMNTAAQESDARIAGALGAVAARALLGADVAAGLRAQGRRSLL 149

Query: 79  Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    +    G  ++  +    R + +R+  + +V+A    A+A+A I+  LP
Sbjct: 150 PGHWDRLAVCWHLAQAQGLAIATLMLAAQRDIAERERFRGRVEAGLAGARATAAILAGLP 209

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                L +      ++ L +   G  LL     F+  G++    + 
Sbjct: 210 VLGVLLGHAIGAEPLSFLFSGGFGGWLLVTGTVFVCCGLLWSDRIT 255


>gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 338

 Score = 64.7 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 69/158 (43%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +   +R  + +++ P  +D++      GL +  ++ ++  +       + SE     +
Sbjct: 174 VSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQEFGSVLPVLSSELAMANQ 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G S  +S+ R+      Q+++    ++    + GG +   L +    LR+++  + 
Sbjct: 234 LYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQGPLQDFGIRLREKRQARF 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  ++  K +  ++ +L   +  +V    PG+M V+
Sbjct: 294 KEKIGAITVKMTGVMVLTLLPAL--MVITAGPGFMAVI 329


>gi|157502153|ref|YP_001485252.1| hypothetical protein pBMB67_066 [Bacillus thuringiensis]
 gi|87133458|gb|ABD24368.1| hypothetical membrane protein [Bacillus thuringiensis]
          Length = 305

 Score = 64.7 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           M    KKR   +  +     L+ +  ++ A    S A+  I+     P++ +    +   
Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK+
Sbjct: 170 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 229

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +A     ++S   I  +      +    +          P G ++L +     +I
Sbjct: 230 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 284


>gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 64.7 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMV 73
           P    ++   + AGL +  A+  +   + + +     E   V+     G     ++  M 
Sbjct: 159 PMLAQLLRVLIEAGLGLDQALLTVATDNREIIPACSQELSVVMRQVEQGAERGTTLLAMA 218

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R + +QE+     ++    + GGN+ + L     +L DR+ +K + +   +    +  +I
Sbjct: 219 RTLDVQELQDLCEMLRQVYRYGGNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTIIVI 278

Query: 134 GSLPFCVSTLVYFTSPGYMNV 154
                 +  +V    PG++ +
Sbjct: 279 IFFFPALLAVV--AGPGFIAI 297


>gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
 gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
          Length = 250

 Score = 64.7 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 16/188 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
            A+     P+AL  I  +V  GL +  A  V+      P+   FRRV+    + G +  +
Sbjct: 32  RARLESQIPDALRAIADAVSGGLDLRSAFEVVSTLGLSPIADVFRRVVALSSVGGATAPD 91

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAKVQALS 123
           ++  +   + +     F+ ++   ++ G  L E L       + ++  R+++ A+++   
Sbjct: 92  ALWSVAEELGVPNFKRFALIVVEAARSGAKLPEVLGTAARTFATVVEFRRDLSAQLRPYV 151

Query: 124 M---------EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +          A +   +   LP         ++       I+ P    +L + A    +
Sbjct: 152 LLYYAVVGVFAALSDVLVYFMLPRLAQLTAQVSNAAIRPATISTPDALAVLLLTAILQAL 211

Query: 175 --GIMVMR 180
             G++V R
Sbjct: 212 VGGLVVGR 219


>gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 304

 Score = 64.7 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 59/138 (42%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R      + P  L  ++ SV++G  +  A+     ++   +  E + +      G  + 
Sbjct: 82  QRRDSIDRNMPVFLLALLSSVQSGSNLIKAIEQAAERNLGALTPELKNLKANISWGTPIE 141

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++     +    +     + ++ +  ++GG++SE L  + + + + +N++   ++     
Sbjct: 142 DAFENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPY 201

Query: 127 KASAWIIGSLPFCVSTLV 144
             + +I  ++   VS L+
Sbjct: 202 TYTIYISFAVFLAVSVLL 219


>gi|86740440|ref|YP_480840.1| putative integral membrane protein [Frankia sp. CcI3]
 gi|86567302|gb|ABD11111.1| putative integral membrane protein [Frankia sp. CcI3]
          Length = 302

 Score = 64.7 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 2/161 (1%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           + A   +  A+      +   +RSE   +         L  ++  +   +          
Sbjct: 115 LAAAAGLEQAILATAQTAPAAIRSEIALLAARIERRERLGPALRGLADDLDDPLADLVIG 174

Query: 87  VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            + + S+     LS  L  L+   R + +M  +++      + +  ++       +  + 
Sbjct: 175 ALILASEHQARQLSGLLGQLAATARAQVDMLGRIEVGRARMRTTMRVVVVTSIVFAGGLV 234

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             +  +++   +   G ++L    A    G + +R M   +
Sbjct: 235 VFNRPFLDP-YSTAAGQLVLLAIGAIFAAGFVWLRRMARIE 274


>gi|228942720|ref|ZP_04105248.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975831|ref|ZP_04136361.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982328|ref|ZP_04142604.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
 gi|228777433|gb|EEM25724.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
 gi|228783857|gb|EEM31906.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816931|gb|EEM63028.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 305

 Score = 64.7 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           M    KKR   +  +     L+ +  ++ A    S A+  I+     P++ +    +   
Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK+
Sbjct: 170 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 229

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +A     ++S   I  +      +    +          P G ++L +     +I
Sbjct: 230 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 284


>gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 298

 Score = 64.7 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 69/168 (41%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRT    +    A   I+  V +G+PV +A+  +   +   V  EF+  IE    G+   
Sbjct: 117 KRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVANGNYGVVSDEFKEAIEEIESGVPQE 176

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  + R +P Q +     ++    + G +++  L+ ++ +L  ++    K  A  +  
Sbjct: 177 DALDHLARRVPSQSLRRTIDIMLNAIKSGSDVAGTLSLINDMLIKKQQSDMKSYAGELTP 236

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + A+++ S+      +  F   G +         +++      F + 
Sbjct: 237 MSMAYMLISVVMPSLGMSVFIILGSLAHFNTVAIIYIIPPFLLMFQIF 284


>gi|326943832|gb|AEA19722.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 316

 Score = 64.7 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 1/175 (0%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           M    KKR   +  +     L+ +  ++ A    S A+  I+     P++ +    +   
Sbjct: 121 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 180

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S+ ES   ++     + +  F  ++ + S+ G +    L  ++   + +K  KAK+
Sbjct: 181 LEGTSIKESFEPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKIYKAKL 240

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +A     ++S   I  +      +    +          P G ++L +     +I
Sbjct: 241 KAGMEPKRSSFKKIAIMTASFPFMFLAVTADDYIAFAGTPTGKIILTLMILVNII 295


>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
 gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
          Length = 191

 Score = 64.3 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-------PVRSEFRRVIETQHLGLSL 65
              F N L  ++ S++AG  ++++  + + +  +       P+  + RR+I+   L ++L
Sbjct: 46  EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +          L+E   F+ VI +    GGN+ E L    + L+ + + + +++ L  
Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVLLS 164


>gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
 gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
          Length = 293

 Score = 64.3 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + +   + K      +A +++   + AG  V  A+  +   S   + S+    +    
Sbjct: 140 LTYRVNTFSKKLNSQVADAAELLALVISAGESVPGALNRVAKVSGPQMASQLESALTQIA 199

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++S+++  +    P  ++      +    + G +LSE L + ++ LR+ ++++    
Sbjct: 200 QGTAVSKALKTLANKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLRE-ESLRN--- 255

Query: 121 ALSMEAKASAWIIGSLPFCVST--LVYFTSPGYMNV 154
            L    +    ++  + F +    +++   PG + +
Sbjct: 256 LLESGGRKEIAMLIPVVFLILPVTVIFALYPGLIAL 291


>gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium
           evestigatum Z-7303]
          Length = 652

 Score = 64.3 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 3/155 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  KR ++  +  P     +     AG+ + DA+++        + +E  ++ E  + G 
Sbjct: 433 LRAKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQSKVGIIHTEIGKMKEDINWGT 492

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L++++ +    +         T I   S+   +++  L   +     +K MK +    S
Sbjct: 493 NLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLNIAANDAEVQKQMKNQ---RS 549

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
            E     +II    F    +VY  +  +++ + + 
Sbjct: 550 TEMYVYVFIIYMAFFVYLFIVYILTVHFLSSMPST 584



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 15/163 (9%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYM 76
           L  + R    GL + D    +            EF  ++      G  +  ++       
Sbjct: 142 LYAMTRG--GGLSLFDIFKSLSNHKHIYGTAAEEFGYIVRDMEFFGHDIITALQNAKLRT 199

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWI 132
           P Q        +      GG+++  L N +   R      +    +   +  E+  S ++
Sbjct: 200 PSQNFRELIDGLISILSSGGDITAYLKNKTEQYRSVAKTEQQTFLETLGILAESYVSVFV 259

Query: 133 IGSLPFC-VSTLVYFTSPG-----YMNVLINDPRGHMLLGVAA 169
           +  L    +  ++   +P      Y+ + I  P G M+  +  
Sbjct: 260 VAPLFLMTILVVLGLLNPTSILIMYLLIYIAVPFGTMVFLILL 302


>gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 312

 Score = 64.3 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++ R  + L +FP   +++  +V AG     A+  +V +S   + ++  RV+     G  
Sbjct: 160 VRARERRILAEFPTVAELLALAVAAGEGPVAALDRVVRRSGGELSADLARVLAEIRTGEP 219

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++ +   M     L  V+ F+  I+V  + G  L++ L   +  +R+      + + +  
Sbjct: 220 VATAFDAMASASGLPLVARFAQGIAVAVERGTPLADVLHAQAADVRE----AGRRELIEA 275

Query: 125 EAKASAWIIGSLPFCVSTL--VYFTSPGYMNVLINDP 159
            A+   +++  + F V  +  ++   PG + + +  P
Sbjct: 276 AARKEVFMMVPVVFLVLPITVLFAFWPGVVGLHLTTP 312


>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
 gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
          Length = 314

 Score = 63.9 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 71/185 (38%), Gaps = 5/185 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQH 60
            +  +R     +   + ++++V   +A      ++   +      +P+ SE R+ +    
Sbjct: 125 FIKNRRLNMIEEQVGSFMNLVVERYKAQNDFPKSIKESLYDFKGQEPMYSEIRQTVLDIE 184

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE--ALANLSRILRDRKNMKAK 118
           LG+  ++++  + R    + +   S    +   LG   +    L    +   + + MK+ 
Sbjct: 185 LGIPTTDAMDNLARRTGNKYLERLSNYYQIAMTLGTEDARENLLGEAFQQFEENRKMKST 244

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIM 177
           ++         A+I+ +    + +    TS  Y++ ++N   G +    + A  M     
Sbjct: 245 LRKEIAGPVREAYIMVAAIPLLISYQIATSDSYVDFMLNTTPGKIGSTVICAIIMGSIWF 304

Query: 178 VMRLM 182
           + + +
Sbjct: 305 INKKI 309


>gi|21234166|ref|NP_639743.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|13620652|emb|CAC36691.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 330

 Score = 63.9 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 64/181 (35%), Gaps = 4/181 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            + R  +  +     L+ +     AG+ +   +      +  P+ +  R + E    G+ 
Sbjct: 105 AQARIERL-EALAQWLNHLAGVHTAGIGLPATIRASAKNAPSPIAASVRTLSERLRSGME 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123
             ++       M          +    +   G  L++AL  ++  +  +      ++A  
Sbjct: 164 AHDAFELFADEMADGVFDHVVLLFQSHAVYKGPGLADALEAMAVTIHQQAADARDIEADR 223

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + + SA ++  +  C+  L    +  + +     P G ++L +        +M++R + 
Sbjct: 224 AKVRKSARLVSIV-ICIVVLGCMLNEAW-SAWYQTPPGQVVLALLGGGFAWTLMMLRRIA 281

Query: 184 N 184
            
Sbjct: 282 R 282


>gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3]
 gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 308

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 5/145 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
              I +R  +     P+A   +  S+RAG+  S+A+  +       +  EF R +     
Sbjct: 88  NFRIVRRIEEMERALPDAFFYLAGSLRAGVSFSEALEELSTAKFGALTREFMRTVAEMKR 147

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G    +++           V + S +I +   + G  +++ L  +   +R+   +K + +
Sbjct: 148 GRPTVDALRAFALRNKKSLVIYRSMMIVIEALERGAPMADVLIAVGNDVREILRIKKERK 207

Query: 121 ALSMEAKA----SAWIIGSLPFCVS 141
           A +         S   +G     + 
Sbjct: 208 ASTGMQMMFFLTSGGFVGPFIVAIV 232


>gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM
           15829]
          Length = 144

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISR 71
           L + P  LD+I   + +GL    ++ +     +  +   F+R +    LG+ S   ++  
Sbjct: 3   LQELPTLLDVITLGLSSGLSFEASLDLYCMHYNGVLAQLFQRQLLQYRLGVISRRAALQD 62

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +   + +  ++ F++ +    + G  L   L++ ++ +RD +  + + +   +  K    
Sbjct: 63  IADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPVKM--L 120

Query: 132 IIGSLPFCVSTLVYFTSP 149
           I   +    + L+    P
Sbjct: 121 IPMGVLIVPAMLISIMGP 138


>gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 647

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 76/171 (44%), Gaps = 3/171 (1%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +K+  + L   P  L+ +  +  +G+P+  A+A+I    + P++ E +++      G+SL
Sbjct: 426 RKKAKRTLRLTPIFLNKLASANESGMPIYRAIAMIAKTDTTPLKKEIQKIKSDLDWGISL 485

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++ R    + + E+S   T+++   +  GN++E L   ++   + + ++ +       
Sbjct: 486 NDALIRFANRLRVFELSRTITLLNEALKSTGNVTEVLMISAKDASNAELLRRE---RLSN 542

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                 II    F    +VY  +  +++ L          G     ML GI
Sbjct: 543 MFMYVIIIYISFFVFIGIVYIITTTFLSTLAESAAKVAESGGTGMTMLRGI 593



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61
           I  R +K     P+A+  +    R G+ + +    +    +    V  E  R++     L
Sbjct: 131 ISDRKSKIDRALPHAITFMYSLSRGGMNLIEIFRALSEYYEVYSEVSREAARILRDMEVL 190

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA---- 117
           G  L  +++  V   P +    F   +      GG++++ L + +    +R         
Sbjct: 191 GKDLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERARQDQKNFL 250

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +   L  E+  +A++ G L   +   V   
Sbjct: 251 EFLGLMAESYITAFVAGPLFLIIIQTVMVV 280


>gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
          Length = 322

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 65/151 (43%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K +  K    FP+ L  +    R+G+P+  A+ ++       +    + +      G++
Sbjct: 98  VKTKIRKIDAHFPSLLGDLAHLRRSGMPLGAAMGLVAQGQYGVLTKPIKWIDSQMTWGVT 157

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             ++++R  +  P   +    ++I   S+ GG + E L  ++    + K ++ K ++ + 
Sbjct: 158 FEDALARFAKRYPTPLIRRSISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKSETT 217

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              A +++   +   V  ++  +    M V+
Sbjct: 218 PYLAVSYLSYFVFVAVIMILCTSFLPMMEVM 248


>gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct]
          Length = 304

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+  +       +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 708

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           FP+ L+++  + + G+ + +++A++   S+  +  E R +            ++      
Sbjct: 497 FPDTLNLLSSANQMGISLVESLALVSRWSTGALADELRALRNDIRWNHDAHAALMAFATR 556

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + + ++S    +I+   +  G+LS  L+  +   R+R  ++ K +  +M +  +  +IG 
Sbjct: 557 LNVPQLSRVIRLIASGGRTSGDLSRVLSVAAEDTRNRYKLE-KSRRRAMGSYIAIVVIGY 615

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
             F    ++      Y+  L
Sbjct: 616 --FVYLFVILMIGASYLGPL 633



 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 7/180 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           K   + R        P+A+  +      G+   + +  +        V  EF  +     
Sbjct: 156 KSRAEMRGRSIDILLPHAIVYMYALSHGGMSFLEVIRSVADAPDYGEVSREFEMIARDMD 215

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNM 115
           L G  L  ++       P      F   +      GG+++  L   S       RD +  
Sbjct: 216 LFGNDLFTALRNSRNLTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQED 275

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +  ++  E   +A++   L   V+ + + F     +  L         LG+    +L+
Sbjct: 276 FIETLSMLSEVFVAAFVAAPLLLIVTLMVISFLGGDTLVQLYALNYLIFPLGMGLFLLLV 335


>gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
 gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
          Length = 248

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 2/142 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69
           +     P  L ++  +V AGL +  AV      +  P+    RRV+    + GL++ E++
Sbjct: 30  RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRRVLTLSEVGGLTVEEAL 89

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKA 128
            R+   +P      F+ +++  ++ G  L E L   +R        +  V +        
Sbjct: 90  WRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149

Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150
              I+  L      L+Y   P 
Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171


>gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1]
 gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 303

 Score = 63.6 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+  +       +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 680

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 57/151 (37%), Gaps = 3/151 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +   K +    + L  +  +   GL + ++V  +   SS  +  EF R+      G+ + 
Sbjct: 453 RSRHKVIRKLSDDLRKLSSANDTGLTLLESVKNVAETSSGKLADEFDRIHAKVEYGMGMK 512

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++    +IS   +    ++  L   ++   ++ ++  + +     A
Sbjct: 513 AALIEFNNRYHIPRLARTVKLISKAQEASSQITAVLTTAAQTSENQDDIARERR---SRA 569

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +    II      +  ++      +++V+ N
Sbjct: 570 RMQVVIIIMTYLTLLAVMAILKTQFLDVMAN 600



 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 11/176 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63
           R  +     P+A+  +      GL    + +A+A     +   V  EF+ V++      +
Sbjct: 144 RKREINMLLPDAISFMYALSIGGLNQLEILEAMAK-ADDTYGEVSREFQSVVQETEYFDI 202

Query: 64  SLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAK 118
               +I +     P  E+S FF+ ++S+    GGN++  L        R  +  + +  +
Sbjct: 203 DYRNAIRKRALETPSDELSQFFTDMLSI-INSGGNMTRFLDDKKDKHMRTAKQEQELTLE 261

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              L  E   +  +   L   +  ++         +L       + L      +L+
Sbjct: 262 TLELFGEMYMTLSLFPLLLIIILVIMSMLGKAQEMLLYGTVYALIPLTGVGFLVLV 317


>gi|302553075|ref|ZP_07305417.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470693|gb|EFL33786.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 282

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG    +A+          +      V+     G  +  +++   R    + +
Sbjct: 115 VLAGEVRAGRQPGEALLRAARDCGG-LADAQATVLAAARFGGDVPGALATAARQPGAEGL 173

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L+  LR  ++ ++ + A    A+ +A ++  LP    
Sbjct: 174 RGLAACWRVAVDQGAGLAAGLDRLTAALRAERDQRSDLSAQLAGARTTAVMLAGLPALGL 233

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +        ++VL++   G   L    A   +G+  +  ++ 
Sbjct: 234 LIGTALGADPLHVLLHTTAGLGCLMAGGALEGLGLWWVLRIVR 276


>gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
 gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
          Length = 264

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 1/141 (0%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           + + A+   + P+  D++   + +GLP+  A+  +   SS   + +E   V +    G  
Sbjct: 112 RSKQARIYRELPDFSDLLAMMLASGLPLIPALDRVSKASSMGYLANEISYVGQQIRRGRD 171

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ + + +     +  +S +  +++   Q G +L+EAL   S  LRD +   A+ +A   
Sbjct: 172 LTSAFTGLADLYRVNALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKKAQEA 231

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
             K    ++         ++ 
Sbjct: 232 PVKLLLPLLSCFFPVNFLVIL 252


>gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1]
 gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2]
 gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58]
 gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
 gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
 gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1]
 gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
 gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
 gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +KH  K R A   D+    + +I     AGL V   + V+  +       +  E    + 
Sbjct: 141 LKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRVVCLEGRGITPQLARELDLALT 200

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+ L+E +  + R + +  ++    V+    + GG+    L  L ++  DR+    
Sbjct: 201 RADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGGSARSTLLTLKQLFEDRRLTTL 260

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           + +   + AK S  ++  L   +  ++
Sbjct: 261 QERIGKLSAKMSLVMMVLLFPALLIVL 287


>gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative
           [Thermococcus sibiricus MM 739]
 gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative
           [Thermococcus sibiricus MM 739]
          Length = 308

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 2/145 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             + K+     ++ P+A   I  S+RAG+  S+A+          +  EF+R +     G
Sbjct: 85  WKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALEEASTARFGALTDEFKRTVSEIKRG 144

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            S  E++           + + ST+I +   + G  +++ L  ++  +R+   +K + +A
Sbjct: 145 RSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVANDVREILRIKKERKA 204

Query: 122 LS-MEAKASAWIIGSLPFCVSTLVY 145
            + M+A       G L   +  +V 
Sbjct: 205 STGMQAMFFIIASGFLGPAILGIVS 229


>gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist]
 gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist]
          Length = 294

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ ++ ++ +VRAG+ + +A+  +       +R  F  +        + + +++     
Sbjct: 118 WPDIVENVISAVRAGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNFASAVANAKCA 177

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +   +       + +   LGG  L + L NLS  +R+    +A++         +A I  
Sbjct: 178 LADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWVVNAARIAV 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  ++   +        N   G +++ + A    I   +M ++   
Sbjct: 238 AAPWAVLAIMSTRAET--VSAYNSQAGVVVIILGALSCAIAYKIMMVVARI 286


>gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 672

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K R  +     P+ LD +     AG+ V  ++  +       +  E  R+      G ++
Sbjct: 451 KYRLRRLEQAVPDFLDRLASLNEAGISVVSSLDRVRDSDVGALDDEVNRIWRDIEWGATV 510

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            +S++R    +    V+   T+I+   +    +   L   +   R
Sbjct: 511 EQSLNRFESRVKTPSVTRVVTLITNSMRASNEIGPVLRIAAEQAR 555



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64
           R  +     P  +       R G+   D +  +           +E   V+    L  + 
Sbjct: 150 RQRQIDASLPRMVAFTYALTRGGMSFPDVLRTLSQNEDVFGEGAAEIGVVVRRMDLFNVD 209

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK--VQAL 122
           L  ++  + +  P ++ + FS  +    Q G N+S  L       RD    + K  ++ L
Sbjct: 210 LVTAVQDISQQTPSEQFAQFSENLVSVLQSGQNVSTFLREQYERYRDEAEEQQKEILELL 269

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  A+    +I +    + T++          L        ++  AA  +++  ++
Sbjct: 270 ATAAEVYVTVIVAGMLFLVTILLIIGLTVGETLFIMQAIAYVIIPAANLLILSYLL 325


>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
 gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
           albus 8]
          Length = 290

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           I+K    ++ DFPNA+  I   V  G+ + +A   +   S +P+  + R V++  + G+S
Sbjct: 141 IEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVAISSDEPLYVQMRGVVDDMNNGVS 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNMKAKVQALS 123
             +++ R       +E+  FST I+   +  G +L++ L   + +L      + K   L 
Sbjct: 201 EIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLL----LNEKKQMVLQ 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              KAS  ++  +      ++       ++ +
Sbjct: 257 QGEKASNKLMFPIGLIFIGVLVMIMVPILSNM 288


>gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 284

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 9/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  + L D+P  L  +   + AG+P+ +A   +   +   +  E +      +
Sbjct: 131 LNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEGILYQEMKNTAMELY 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119
            G+  +E+         ++ +  FST++    Q G   + E L ++S    + K  + K 
Sbjct: 191 NGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMSTEAWEEKKHEVKR 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +      KAS  ++  +    + ++       +  + N 
Sbjct: 251 KGE----KASNKLLLPIGLIFAGVLILI----IVPMFNS 281


>gi|297159256|gb|ADI08968.1| putative type II secretion system F protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 303

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 3/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG      V  ++      +   +  V      G  ++E++ R  R    + + 
Sbjct: 132 VAGELRAGR---QPVEALLATPPGHIGERWGLVSAAARFGGDVAEALRRAARSPGAEGLI 188

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  ++  LR  ++ +  +++    A+A+A ++  LP     
Sbjct: 189 GVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRQSLRSRLAGARATAVVLVLLPVLGLL 248

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +        ++VL++ P G   L V       G      +I 
Sbjct: 249 MGTALGADPLHVLLHTPAGLACLLVGGLLEWAGFAWTSRVIR 290


>gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 351

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 56/161 (34%), Gaps = 26/161 (16%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +R G+ V  A                    E   +G+   E +++        E +  ++
Sbjct: 63  LRCGMSVPQAWEQA---------------CEDLQVGVDAEEVLNQ-------PEFAQVAS 100

Query: 87  VIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            I     V +++G  L++AL  +   L + +     ++      +A+  ++ +LP     
Sbjct: 101 SIRAAGKVSAEIGVGLADALEAIVGSLEEAEENAKSLEVAFASTQATVRLLAALPAVGLG 160

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           L +         +     G ++        + G + +R ++
Sbjct: 161 LAWLLGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLV 201


>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
 gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 59/139 (42%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++  S+ +G  V++A+  ++    + V  EF +++        S  
Sbjct: 78  KIEKFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFE 137

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++ +              +I    + GG L+  L  L++ L D  N+K ++ + +   
Sbjct: 138 DAMTTITENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANG 197

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 198 LVVGLVILCGVIPATAGLI 216


>gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 248

 Score = 62.8 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 2/142 (1%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69
           +     P  L ++  +V AGL +  AV      +  P+    R V+    + GL++ E++
Sbjct: 30  RLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEMGGLTVEEAL 89

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME-AKA 128
            R+   +P      F+ +++  ++ G  L E L   +R        +  V +        
Sbjct: 90  WRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSVASQLRPYVAL 149

Query: 129 SAWIIGSLPFCVSTLVYFTSPG 150
              I+  L      L+Y   P 
Sbjct: 150 YYAIVVVLAVLTDVLIYMLLPQ 171


>gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 680

 Score = 62.4 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 56/150 (37%), Gaps = 3/150 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++           +L  +  +   G  + ++V  +   S+  +  EF  V    + G+SL
Sbjct: 454 QRSKRAITGKLSESLRKLSSANDTGQTLLESVETVSETSTGKLAEEFEVVHAKVNYGMSL 513

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++        +  ++    +IS   +    +++ L   ++   ++ +++        +
Sbjct: 514 RDALVEFNNKYAVPRLARTVKLISEAQEASSEITDVLTTAAQASENQDDIER---NRISQ 570

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +    II      +  ++      +++V+
Sbjct: 571 TRMQVAIIVMTYVTLLGVMAILQTQFIDVM 600


>gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049]
 gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 678

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 60/150 (40%), Gaps = 3/150 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           ++     +      L  +  +   G+ + ++V V+   SS  +  EF  +    + G SL
Sbjct: 454 QRSRKAIIGKLSENLRKLASANDTGMTLLESVKVVSETSSGKLSDEFETIHAKVNYGTSL 513

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++        +  ++    +I+   +    + + L+  ++   ++ +++ + ++ +  
Sbjct: 514 KDALREFNNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDIERERKSRT-- 571

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +    II      +  ++      +++V+
Sbjct: 572 -RMQTVIILMTYLTLLGVMALLKTQFLDVM 600


>gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 286

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 2/142 (1%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            +P+ +D +  +VRAG  + +AV  +  +     R  F R         +    + R+  
Sbjct: 109 QWPDVVDTLASAVRAGASLPEAVCALAVRGPRSSRPAFARFAAAHRASGAFEPELRRLQD 168

Query: 75  YMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +        +  + +  Q+GG +L   L  LS  LR+ +  + ++ A      ++A + 
Sbjct: 169 ELADPVFDRLAATLRMTRQVGGSDLGTTLRTLSGYLREDQRTRGELLARQSWTVSAARLA 228

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
            + P+ V  L+  T PG +   
Sbjct: 229 VAAPWVVLALL-ATRPGTLEAF 249


>gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 356

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VIV +    +R    E  R  +    G S  +++ 
Sbjct: 204 DELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQTLL 263

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ R    +++    T+++   + GG + E L      +++ +  + K +   +  K +A
Sbjct: 264 RIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRMKDEIGRLTVKMTA 323

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ SL   +  L+    PG++ V+
Sbjct: 324 VMVVSLLPVL--LILTAGPGFLGVI 346


>gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
 gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
          Length = 232

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60
           HLI  R   F ++FP  L +++  + AG+P+  AVA +   +    +  E   V+     
Sbjct: 39  HLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAEVEDDKYIARELSLVVRDMVV 98

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  +++      +P Q      +V++  S++   L   L      +  +K M+A   
Sbjct: 99  MGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLDAVLMARLDWMLRQKQMRAASL 158

Query: 121 ALSMEAKASAWIIGS--LPFCVSTLVYFTSP---GYMNVLINDPRGHMLLGVAAAFMLIG 175
             S+      ++I +  LP  +  +    SP     +  +  DP   M+L       LIG
Sbjct: 159 VRSIAVLFEIYVIAAQLLPILLFIIALSLSPLGTLRIGGISLDPLTVMVLAGLIYSPLIG 218

Query: 176 IMV 178
           ++ 
Sbjct: 219 LVF 221


>gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
           43017]
 gi|256587413|gb|ACU98546.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
           43017]
          Length = 282

 Score = 62.4 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 5/174 (2%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMV 73
           D  + L  +V  +RAG     AV  +  ++  P+    R +  +    G+  +E   R  
Sbjct: 104 DLASLLRGVVTELRAGAHPVTAVENVAREAPRPLADRLRGLAASARFSGVPTAEPEVRAA 163

Query: 74  RYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
               ++         +T  ++ ++ G  L++    + R +        ++ A     +A 
Sbjct: 164 CGPGMEHVDRIFGRLATSWALSARHGIPLADVFDAVHRDMETTARSARQLDARLAGPRAG 223

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           A ++  LP     L        + VL+    G +L  V AA ++ G+     M 
Sbjct: 224 AAVLAFLPVAGLVLGEAMGAAPIPVLMGTSVGSVLFVVGAALLVAGVAWTSSMT 277


>gi|313835133|gb|EFS72847.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929111|gb|EFS92942.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970944|gb|EFT15042.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328905819|gb|EGG25595.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 293

 Score = 62.0 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 2/159 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++      +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLVGPLTRVVARLDSRWDTRSALQGFADDLNSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +         + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAATMMAAERGGTGATTTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            V          Y+        G +LL    +  L+G++
Sbjct: 231 VVLAGALILGREYLAP-YRTGVGQLLLCCYTSLYLVGLI 268


>gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 316

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           +      R  +   + P  +D++      GL +  ++ ++    S  +R    E      
Sbjct: 153 LGQFAAARRERVAQELPLFIDLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANR 212

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   S+ R+      + +    +++    + GG + E L   S  LR+ +  + 
Sbjct: 213 QYSQGRTREHSLQRLATLHKNENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEM 272

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +   +  K +  ++ +L   +  ++    PG++ ++
Sbjct: 273 KDRIGKITVKMTGVMVTTLLPAL--IIVTAGPGFIAII 308


>gi|313764978|gb|EFS36342.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313815462|gb|EFS53176.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313829026|gb|EFS66740.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314916257|gb|EFS80088.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917527|gb|EFS81358.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921861|gb|EFS85692.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930875|gb|EFS94706.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955330|gb|EFS99735.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959202|gb|EFT03304.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314969037|gb|EFT13135.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA1]
 gi|315099724|gb|EFT71700.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102363|gb|EFT74339.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109820|gb|EFT81796.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327334603|gb|EGE76314.1| membrane spanning protein [Propionibacterium acnes HL097PA1]
 gi|327454294|gb|EGF00949.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456359|gb|EGF03014.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328756053|gb|EGF69669.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328758898|gb|EGF72514.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 293

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ +P+     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPEPLIEPLTRVVARLDSRWDTRSALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMATERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|296268208|ref|YP_003650840.1| type II secretion system protein [Thermobispora bispora DSM 43833]
 gi|296090995|gb|ADG86947.1| type II secretion system protein [Thermobispora bispora DSM 43833]
          Length = 263

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  + +A+A +  +  DP       V+     G  ++ ++         + +   +    
Sbjct: 100 GEALVNAIAAV--EPPDPAA--LTPVVAAVRDGGDVAAALLSAAPEEGGEGLVRLAACWR 155

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V + +GG L+  +  L+  LR+ +  + +V A     +A+A ++ +LP     +      
Sbjct: 156 VSTSVGGGLAALVDRLAASLREAEAHRQEVAAQLAGPRATARMLAALPLLGLLMATALGV 215

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  L+  P GH  L +  A    G+   R + +
Sbjct: 216 SPLPFLLGSPAGHACLLIGLALDAAGVWWTRRLAD 250


>gi|254389726|ref|ZP_05004951.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197703438|gb|EDY49250.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 305

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 7/170 (4%)

Query: 18  NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            A++  VR +      G+ +   +   +      +R E + ++  +  G    ++     
Sbjct: 113 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 172

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +    V   + ++ +  +  G  LS+A+  L+  L+     + +V+A   + + +   
Sbjct: 173 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 232

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +      +  +   +   Y+    N   G  +LG  A   ++  + MR M
Sbjct: 233 VTMFCLGIFGITALSG-TYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRM 280


>gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
 gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
          Length = 345

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VIV +    +R    E  R  +    G S  +++ 
Sbjct: 193 DELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQTLL 252

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ R    +++    T+++   + GG + E L      +++ +  + K +   +  K +A
Sbjct: 253 RIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKMTA 312

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ SL   +  L+    PG++ V+
Sbjct: 313 VMVVSLLPVL--LILTAGPGFLGVI 335


>gi|326445375|ref|ZP_08220109.1| type II secretion system protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 309

 Score = 62.0 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 64/170 (37%), Gaps = 7/170 (4%)

Query: 18  NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            A++  VR +      G+ +   +   +      +R E + ++  +  G    ++     
Sbjct: 117 EAIEEWVRRMSDIHTVGVSLEATIQRSLETVPKAIREEVQLLVSREQSGWVPQDAYKAFA 176

Query: 74  RYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +    V   + ++ +  +  G  LS+A+  L+  L+     + +V+A   + + +   
Sbjct: 177 DDLNDALVDEVAALLILHVEDRGSGLSKAMRELAEALQHEVLARREVEADRQKPRTNDRW 236

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +      +  +   +   Y+    N   G  +LG  A   ++  + MR M
Sbjct: 237 VTMFCLGIFGITALSG-TYVEP-YNTVTGQFVLGFVAVSFVLVKVWMRRM 284


>gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
 gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
          Length = 316

 Score = 61.6 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 69/183 (37%), Gaps = 1/183 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++ R  K ++    A+ I          V  A+++   +   P+    R+       G 
Sbjct: 134 RVQNRRNKIIEQLAAAVRIFAAEFGDTPQVPRALSITAQKVPAPLGDILRQADTDLAAGK 193

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S+ +    +++ +  +    F  ++ +       +      L+  + + + +  K  +  
Sbjct: 194 SIDDVCLYLMKELDFEYGRMFVQLLRLAWD-DAAVRPLFTRLAGRIANLQGLIYKNASGM 252

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             ++     + +L      L+    P     L+ +P G +L+ V    +L+G+++ R++ 
Sbjct: 253 AYSRFMGMFVNALILPEFLLMRSVVPETGYFLVYNPLGRLLVVVCFLSILVGMILDRVLS 312

Query: 184 NFD 186
             +
Sbjct: 313 GVE 315


>gi|184200111|ref|YP_001854318.1| hypothetical protein KRH_04650 [Kocuria rhizophila DC2201]
 gi|183580341|dbj|BAG28812.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 254

 Score = 61.6 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSESISRMVR 74
           A+  +   + AG   +   A I   ++DP      RV +  H    +G+ +S ++ +  R
Sbjct: 66  AVRRLAALLHAGRAPATVFAEITPGTADPTARWITRVCQEVHAAALVGIPVSTTLGQFAR 125

Query: 75  YMPLQEVSFFSTVIS-----------VQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
                                     +  + G +L+  L+ ++  L  R + +A  ++  
Sbjct: 126 RPAAVGDRVLGATARSVCAQLAACWEISERSGSSLARTLSGVAESLESRLDAQAARESAL 185

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +   +  LP     L        ++ L+    G + L   A   + G +  R ++
Sbjct: 186 AGPRVTVRTLSWLPVLALGLGVLMGTDPVSTLLTTVWGRIALAAGAGLSIAGRLWTRSLM 245


>gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
 gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
          Length = 412

 Score = 61.6 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 2   KHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + L+++R  K   +    A+  +     AG+ + DA+  +  Q++D  ++  F  V    
Sbjct: 58  RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVATQTNDAKLKQIFLDVANGI 117

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G+S SE++ +        E+      ++   +  G+++ AL  L+ IL   + +   +
Sbjct: 118 NSGISFSEALKQYQN-----ELGSLVITMATLGEKTGDMAHALFTLASIL---EQINENI 169

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +      +    ++ ++      ++ +  P + ++ 
Sbjct: 170 KKFKKAVRYPIIVLSAMAIAFVIVISYVVPKFKSIF 205


>gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1001]
          Length = 367

 Score = 61.6 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ V+V         + SE          G +  +S+S
Sbjct: 217 DELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSSELDIAQRQFAAGRTREQSLS 276

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   M  K + 
Sbjct: 277 RLASSFENEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMTG 336

Query: 131 WIIGSLPFCVSTL 143
            +I +L   +  +
Sbjct: 337 VMILTLLPALMIV 349


>gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 297

 Score = 61.6 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 2/164 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + +++ SV  G  V DA+     Q +  +R+    +I       S + ++  M   +   
Sbjct: 110 VRLLIGSVSTGKSVPDAIRATRNQVAPVLRAPVDGLIARLDARWSTASALRAMADDLAHP 169

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       + V ++ GG    +AL  L +  R R     ++     + +     +  +  
Sbjct: 170 DADAIIAALIVATRRGGTGTGDALRALGQHSRRRLQSLREIATERAKPRIVVRQVTLITV 229

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            V   V   +P Y+   +  P G +L     A  L  ++++R M
Sbjct: 230 VVLVGVAVFNPDYVAPYL-TPTGQLLGAGLLAAYLGSLVMLRRM 272


>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 295

 Score = 61.2 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + K+R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LAAVAKRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +M   + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG++ +
Sbjct: 254 QEYISKLSAKMSMVMMVFL--FPALLIVLAGPGFIAI 288


>gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA2]
 gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266]
          Length = 249

 Score = 61.2 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S + + +        P Q+       +S     G  +SE L+  +  L+     K + +
Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
           A      A   ++   LP  +   V     G +
Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27]
 gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27]
          Length = 294

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 68/171 (39%), Gaps = 3/171 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           +P+ ++ ++ +VR G+ + +A+  +       +R  F  +        + + +++     
Sbjct: 118 WPDIVENVISAVRVGMGLPEALCSLSRFGPVRIRQIFCNLENEYGATGNFASAVANAKCA 177

Query: 76  MPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +   +       + +   LGG  L + L NLS  +R+    +A++         +A I  
Sbjct: 178 LADPKADRILETVQLARSLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWVVNAARIAV 237

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + P+ V  ++   +        N   G +++ + A    I   +M ++   
Sbjct: 238 AAPWAVLAIMSTRAET--VSAYNSQAGVVVIILGALSCAIAYKIMMVVARI 286


>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 295

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL +++ S+ +G  V DA+  ++      V   F +++       LS  
Sbjct: 79  KIEKFERNLPKALYVMILSLESGRSVIDAINEVINSGIKEVDVIFLKIVALMTEKKLSFE 138

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +SI  +   +  +       +I    + GG L+E L  L++ L D +N+K ++ +++   
Sbjct: 139 DSIILVSNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTANG 198

Query: 127 KASAWII--GSLPFCVSTL-------------VYFTSPGYMNVLIND-PRGHMLLGVAAA 170
            A   II  G +P     +             +   +P  +   + +   G  + G+  A
Sbjct: 199 LAVGLIIICGVIPATAGIIGGYLNAISQVAPNIAAVTPEQLAKCMENVQIGTGIFGILFA 258

Query: 171 FMLIGIMVMRLMI 183
             + G+ V R++I
Sbjct: 259 VPIFGLKVNRMII 271


>gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured
           methanogenic archaeon RC-I]
          Length = 683

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K   + P+ L  +  +   G+ ++ ++ +I   +   +  E +++ +    G  +S 
Sbjct: 456 RERKIASEMPDFLKKLASTNETGMTLTQSINLIANSNFGTLSKEVQKIHKDLQWGTDVST 515

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ R    +     +   T+I+  S+  G++ + L   +   R  + M+ +        +
Sbjct: 516 ALKRFANSLRTSSSTRVITLITKASESSGDIKDVLNIAANDARANELMRKE--------R 567

Query: 128 ASAWIIGSLPFCVSTLVYF 146
               +I  +   +S LV+ 
Sbjct: 568 FDGMLIYVVIIFISFLVFL 586



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 13/179 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64
           R ++     P+A+  +    + G  +   +  +     +   V  E   VI      G  
Sbjct: 129 RKSRINKGLPSAVTFMYAMSKGGADIITILRSLYEAETTYGEVSREIGFVIRDMDYFGND 188

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA----KVQ 120
           L  ++       P   +    + +      GG+++  L N     R R  +      ++ 
Sbjct: 189 LRAALINCANQTPSDLLQDLLSNLLSVIDSGGDVTTYLNNKVEQYRMRIALDQKSFLEIL 248

Query: 121 ALSMEAKASAWIIGSL-PFCVSTLVYFTSPG-----YMNVLINDPRGHMLLGVAAAFML 173
            L  E+  + ++ G L    +S+++   + G     Y+ +    P G ++  V  + M 
Sbjct: 249 GLIAESYVTCFVAGPLFIIIMSSVMTIMNGGSPMILYIIIYAVLPLGSVIFIVMISMMT 307


>gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA2]
 gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 249

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S + + +        P Q+       +S     G  +SE L+  +  L+     K + +
Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
           A      A   ++   LP  +   V     G +
Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 255

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P A D++   +RAG PV  +V  +      P+      V     LG   +E+ S +   
Sbjct: 117 LPLAADLLASVMRAGAPVDRSVLAVAEALDGPLAERLALVGRLLRLGAEPAEAWSTLAA- 175

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           +P  E    +  +   +  G  L+ AL  L+  LR  +  + +      +A+ S  ++  
Sbjct: 176 VPGAE-RLIAAALR-SAASGATLAGALTRLADDLRADRATEVE-----AKARRSG-VLIV 227

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           LP  +  L  F   G M V+
Sbjct: 228 LPLGLCFLPAFILAGLMPVI 247


>gi|297627215|ref|YP_003688978.1| hypothetical protein PFREUD_20700 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922980|emb|CBL57562.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 265

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           H  ++   K   +  +A  ++   +R G   + A+AV   +               Q +G
Sbjct: 83  HRAERSAIKRSQEVAHACRVMSAQLRIGQTPAQALAVAAEEC-----EVLAGCRAAQQVG 137

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  ++           ++       +  + G  L+ A   +S+ +     ++A + A 
Sbjct: 138 ADVPRTLMAAGDLPGCSGLAALGRAWKLCERSGSPLAPAATRVSQTVDGDARLRADIAAE 197

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +A+  ++ +LP     + + +    +  L     G   L  A   +  G++ 
Sbjct: 198 LAVPRATGRLLTALPLLGIGMGFVSGGDPVAFLTTTMIGKACLVGAVVLVCAGLVW 253


>gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 633

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 5   IKKRTAKFLDDF-PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           IKKR         P  L+ +  +  +G+P+  A+A+I    +  ++ E  ++       +
Sbjct: 413 IKKRQLNTALKLTPVFLNKLASANESGMPIHKAIAMIAKTETSALKKEIEKIKLDLDWKI 472

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL +++ R    + + E++   T++    +  GN++E L   ++   + + ++ +     
Sbjct: 473 SLEDALIRFANRIRVFELTRTITLLVEALRSTGNVTEVLRISAKDASNAELLRRE---RL 529

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
                   II    F    +VY  S  +++VL   
Sbjct: 530 GNMFMYVIIIYISFFVFIGIVYIISTTFLSVLAES 564



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 13/183 (7%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH 60
            +I  R +K     P+A+  +    R G+ + D    I         V  EF +++    
Sbjct: 127 FIISDRKSKINRLLPHAVMFMYSLSRGGMGIIDIFKSIAAYEDVYSEVSKEFAKIVRDIE 186

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK- 118
            L   L  +++  +   P + +      +      GG+++  L   +    +R   + K 
Sbjct: 187 ILSKDLRTALTEAIENTPSENLKDLLHGLITVIDSGGDVTSYLEERAEFYLERARQEQKS 246

Query: 119 ---VQALSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAA 169
                +L  E+  +A++ G L   +   V            Y  + +  P G  +  +  
Sbjct: 247 FLDFLSLMAESYITAFVAGPLFLIIIQTVMAVMGQGDELMLYSIIYLIIPIGSFMFAMVI 306

Query: 170 AFM 172
             +
Sbjct: 307 KLI 309


>gi|159040453|ref|YP_001539706.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157919288|gb|ABW00716.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 300

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 3/154 (1%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  +  A+   V  + + ++ E R +      G     ++      +           + 
Sbjct: 129 GQGLQAAITGTVATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVCDQVVAALI 188

Query: 90  VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +     G  L + L +++         + +++A   + + +   +  +   V       +
Sbjct: 189 LHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAVLAY-GLLN 247

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             Y+      P G +++ V     ++ +  +R M
Sbjct: 248 TDYIRP-YGTPTGQLVMAVLGVAFVVLLAWVRAM 280


>gi|290958554|ref|YP_003489736.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260648080|emb|CBG71188.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 286

 Score = 61.2 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 18  NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +A+  +  +V    RAG     A++     S   +      V+     G  +  +++   
Sbjct: 112 DAVLALCSAVAGEVRAGRQPGAALSRAARDSGG-LGDAGAAVLAAARFGGDVPNALALAA 170

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R    + +   +    V    G  L+  L  L   LR  ++ +A ++A    A+++A ++
Sbjct: 171 RQPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEGALRAERDQRADLRAQLAGARSTAVML 230

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             LP     L        ++VL++ P G   L V A     G+     ++ 
Sbjct: 231 AGLPVLGLLLGSALGADPLHVLLHSPAGLGCLFVGAVLEGAGLWWALRIVR 281


>gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL097PA1]
          Length = 249

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S + + +        P Q+       +S     G  +SE L+  +  L+     K + +
Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKR 212

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
           A      A   ++   LP  +   V     G +
Sbjct: 213 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 245


>gi|291438159|ref|ZP_06577549.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341054|gb|EFE68010.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 324

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG     A+   V  S   +      V+     G  + E+++   +    + + 
Sbjct: 158 LAGEVRAGRQPGAALLTAVRDSGG-LGDAQAAVLAAARFGGDVPEALAAAAQ-PGAEGLR 215

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L++ L  L   LR  ++ +A ++A    A+A+A ++  LP     
Sbjct: 216 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 275

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + +L++ P G   L V      +G+     ++ 
Sbjct: 276 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 317


>gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
 gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
          Length = 342

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE----------FRRVI 56
           KR  + L D+P+ +      ++AG+ V  A   I   SSD +R+                
Sbjct: 188 KRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKI---SSDYLRNCPKEGRYAYEAVTTTC 244

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
                G++  E+  R        +   FST++    Q GG  +++ L   +    D +  
Sbjct: 245 HEMDSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKR 304

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           KA+V   +   K    +I  L   ++ ++    P +++  
Sbjct: 305 KARVMGETAATKLLVPMIMMLAVVMAIIMI---PAFLSFY 341


>gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771]
          Length = 145

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +++  + AG+ +  A   +  +              ++     G  L E+++ +   + +
Sbjct: 1   MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E    + +     +LG ++++ L   S+ +RD + ++A+ +A ++  K    +   L  
Sbjct: 61  DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120

Query: 139 CVSTLVYF 146
               +V  
Sbjct: 121 VSLIIVLV 128


>gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 290

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 1/142 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63
            ++R  +        LD++V S+  G  +  A+      +         R + T  L  +
Sbjct: 140 AQRRRDELRYALSAVLDLVVISLAGGAGLEQALDDACADTHGWAAGRLNRAVATARLLRI 199

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +++ ++     + E+   +  +S+    G  + ++L   +  LR  +    + +A S
Sbjct: 200 PPWQALGQLGEDTGVVELQELAATMSLAGTEGARIRDSLTIRAATLRAHQAAALEARANS 259

Query: 124 MEAKASAWIIGSLPFCVSTLVY 145
              + S  ++      +  L+Y
Sbjct: 260 ATERMSMPVMLLAAAYMLFLLY 281


>gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 284

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   I  R  + L D+P  L  +   V AG+P+ +A   +   +   +  E R       
Sbjct: 131 LNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGLLYQEMRNTAMELS 190

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA-LANLSRILRDRKNMKAKV 119
            G+   E          ++ +  FST++    Q G N     L ++S    + K  + K 
Sbjct: 191 NGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSNEAWEEKKHEVKR 250

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           +     +K    I+      +  ++    P + ++  
Sbjct: 251 KGEKASSKL---IMPIGLIFLGVMILIIVPMFASLRF 284


>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 277

 Score = 61.2 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271


>gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 344

 Score = 60.9 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---SEFRRVIETQHLGLSLSESI 69
            D+ P  +D++      GL +  ++ +IV +    +R    E     +    G S  +++
Sbjct: 191 EDELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQFASGRSREQTL 250

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+ R    + +    T+++   + GG + E L    + +++ +  + K +   +  K +
Sbjct: 251 LRIGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMKDEIGRLTVKMT 310

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A ++ S+   +  L+    PG++ V+
Sbjct: 311 AVMVVSMLPVL--LIITAGPGFLGVI 334


>gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
 gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Vibrio vulnificus CMCP6]
          Length = 292

 Score = 60.9 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66
                  P  LD++   V  G+ +   +  +  +       +       ++   + + ++
Sbjct: 144 RHISSRLPFLLDLMNVCVHTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGIN 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++      +P  E   F   +    Q G ++ + L  L+  +R    M+ + +   + A
Sbjct: 203 KALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGA 262

Query: 127 KASAWIIGS 135
           K S  +I  
Sbjct: 263 KMSIPMIVF 271


>gi|328758435|gb|EGF72051.1| hypothetical protein HMPREF9563_00343 [Propionibacterium acnes
           HL020PA1]
          Length = 256

 Score = 60.9 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +      M  L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|295395523|ref|ZP_06805717.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971542|gb|EFG47423.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 277

 Score = 60.9 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 5/169 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
            +D  V+ ++ G+  + A+ ++     + V     R+V     LG    +++      + 
Sbjct: 106 VIDWAVQLLKVGIEPARAMTLVADLPDNEVVERVLRKVARAMELGEKPDQALRMYAGELG 165

Query: 78  LQEVSFF---STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            ++       ++V  V  Q G   +E LA+ +   RDR +   +         ++  ++ 
Sbjct: 166 DEDARILTGMASVWFVSEQAGAPAAEMLASYASTCRDRADAMRERDVALAGPISTVMVLS 225

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            LP     L        + ++ + P G + +      ++ G + MR M+
Sbjct: 226 WLPIMSLGLAVLVGADLVELVTSVP-GALSICGGLVLLVAGRIWMRSML 273


>gi|254451819|ref|ZP_05065256.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
           antarcticus 238]
 gi|198266225|gb|EDY90495.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
           antarcticus 238]
          Length = 122

 Score = 60.9 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 44/100 (44%)

Query: 44  SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
            +  +  EF         G    +++  M   + ++EV+ F  +IS   + G ++S ++ 
Sbjct: 11  VNPAISEEFLMCQAEILAGRHREQALVDMAERIGVEEVNSFVALISQSMEYGTSISASMN 70

Query: 104 NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             +  +RD + +KA+ +A  +  + S  +   +   +  +
Sbjct: 71  AYAIEMRDAREIKAQEKANKLPVQMSGVMASMMLPALFLI 110


>gi|284989191|ref|YP_003407745.1| hypothetical protein Gobs_0593 [Geodermatophilus obscurus DSM
           43160]
 gi|284062436|gb|ADB73374.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 264

 Score = 60.9 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIE-------TQHLGLS 64
           L     AL  +   +R+G  + +A    V   +D        R +            G  
Sbjct: 93  LAALVEALTGLGAELRSGRSLDEATRAAVAACADDDSGRALARAVRSPGDGAGEADDGGE 152

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++ R             +    + ++ G +L+  +  +   LR R   + ++++ + 
Sbjct: 153 LGRALGR------------VAAAARLSARTGCSLAAVVGAVEDDLRARSRHRLELRSATA 200

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++ASA ++  LP     +          VL     G +LL       + G++    ++ 
Sbjct: 201 GSRASAALLAGLPVLGLVMGGGVGADPWRVLTTTGTGQLLLVAGVGLEVAGLVWSARLVR 260


>gi|239929828|ref|ZP_04686781.1| hypothetical protein SghaA1_16497 [Streptomyces ghanaensis ATCC
           14672]
          Length = 290

 Score = 60.9 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG     A+   V  S   +      V+     G  + E+++   +    + + 
Sbjct: 124 LAGEVRAGRQPGAALLTAVRDSGG-LGDAQAAVLAAARFGGDVPEALAAAAQ-PGAEGLR 181

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L++ L  L   LR  ++ +A ++A    A+A+A ++  LP     
Sbjct: 182 GLAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGLPAVGLA 241

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + +L++ P G   L V      +G+     ++ 
Sbjct: 242 LGAALGADPLRILLHTPSGLGCLAVGGVLEGLGLWWALRIMR 283


>gi|289428857|ref|ZP_06430537.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|289157858|gb|EFD06081.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|313806748|gb|EFS45253.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313817517|gb|EFS55231.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313822021|gb|EFS59735.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313824429|gb|EFS62143.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826450|gb|EFS64164.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|314926543|gb|EFS90374.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314961392|gb|EFT05493.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314980265|gb|EFT24359.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314987404|gb|EFT31495.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314989055|gb|EFT33146.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315082690|gb|EFT54666.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315086397|gb|EFT58373.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315087884|gb|EFT59860.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|327333934|gb|EGE75651.1| hypothetical protein HMPREF9337_00443 [Propionibacterium acnes
           HL096PA3]
 gi|327445235|gb|EGE91889.1| hypothetical protein HMPREF9568_01461 [Propionibacterium acnes
           HL013PA2]
 gi|332674640|gb|AEE71456.1| hypothetical protein PAZ_c02530 [Propionibacterium acnes 266]
          Length = 256

 Score = 60.9 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +      M  L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPMVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
 gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
          Length = 294

 Score = 60.9 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 62/165 (37%), Gaps = 2/165 (1%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           + I   + AG  +  A+A         +    +R+       + L +++  +   +P   
Sbjct: 109 EQIREGLDAGQHLRAAIAASTDHPPAELADPLQRLAARLRSAMPLPDALWALRAEVPHPT 168

Query: 81  VSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +      + V  + G G+L   +A+ +   R+   +     AL    + +  ++ +L   
Sbjct: 169 LGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRAMTLLLALFTG 228

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             T++    P ++     + +G + L V    +++ +  +  M  
Sbjct: 229 AITVLLVAWPNFLAP-YRNLQGQLALTVIGGGVVLAVRALAAMSR 272


>gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
 gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
          Length = 333

 Score = 60.9 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +K     R    +D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 171 VKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 230

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 231 QFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 290

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 291 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 326


>gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1]
 gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 535

 Score = 60.9 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R      + P+ LD    +  AG+   ++    V      +  E  R       G  
Sbjct: 303 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 362

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +++R    +    VS    + +      GNL   L   +      + ++   +    
Sbjct: 363 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNEL- 421

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               +  ++  + F V   +            N P G      + A   +
Sbjct: 422 ---LTYVVVIYVSFFVFIAIIVALDTIFIP--NIPTGAATQAGSGASSAV 466



 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 22/132 (16%)

Query: 36  AVAVIVGQSSDPVRSEFRRVIETQ------------------HLGLSLSESISRMVRYMP 77
           A    + +S  P+    R +   Q                  + G  +  ++ R+    P
Sbjct: 6   AFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDIDNYGADIITALERVGSRTP 65

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KNMKAKVQALSMEAKASAWII 133
             +++ F+  +    Q G +L   L        +     ++   ++ A   EA  +  + 
Sbjct: 66  SDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQSQFLELLATLAEAYVTVLVA 125

Query: 134 GSLPFCVSTLVY 145
           G L      +V 
Sbjct: 126 GPLFLITILVVI 137


>gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M]
 gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 267

 Score = 60.9 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    R   L
Sbjct: 97  ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156

Query: 79  QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R +  R+   AKV A    A+ASA I+  LP
Sbjct: 157 PSHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILAGLP 216

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        +  L+    G  LL V  A    G+     + +
Sbjct: 217 VLGVVLGQLIGAQPLAFLLGGHLGGWLLVVGLALAAGGLWWSDRITD 263


>gi|289770834|ref|ZP_06530212.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289701033|gb|EFD68462.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 311

 Score = 60.5 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 6   KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++R AK      +A+  +       VRAG    +A+      S+  +      V+     
Sbjct: 126 RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 182

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 183 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 242

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L        +G+  +  
Sbjct: 243 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 302

Query: 182 MIN 184
           ++ 
Sbjct: 303 IVR 305


>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
 gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IKKR+ + L DF N +  +     AGL + DA A +    +  +  E +  ++    G+S
Sbjct: 140 IKKRSEELLSDFSNVVSKLALLTNAGLIMRDAWADVAYNGNTTLYKEMQISVDEMKNGVS 199

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALS 123
            +E+I        + E+  F++ I    + G   L+  L   S    +  N+K ++    
Sbjct: 200 ETEAIYHFGNRCIIPEIKKFASTIIQGIEKGNSELTALLQEQSA---ETWNLKRQLVKRE 256

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSP 149
            E  +S  +I      +  L+    P
Sbjct: 257 GEKASSKLLIPMFLMFMGILIMVIVP 282


>gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 291

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 6/180 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVR---AGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  K       AL     S+R   AG   +  A+   V  ++  +R +   + +   + +
Sbjct: 92  KQEKLAAAKIEALATWSESLRDTIAGAVGLEQAIPATVYAAAPVLREDLALLADRMRVRV 151

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQAL 122
            L  ++ +    +         + + + ++L G  L + L  L+   R   +M+ +V A 
Sbjct: 152 PLPTALRQFADDLDDPTADLIVSALIMNARLRGPGLRQLLGALADTARSELDMRQRVSAS 211

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + SA I+      V   +   +  ++    +  +G ++L V  A   +G++ MR +
Sbjct: 212 RAGTRRSAQIVVIFSIVVMLGLAVFNRSFVAP-YSSVQGQLVLVVVVALFAVGMLWMRRL 270


>gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091]
 gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae
           DSM 3091]
          Length = 277

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            L   P  L  +   ++AG+ + DA+  +   +   +  EF+  +     G +  E+   
Sbjct: 101 ILKVIPYVLRELSIELKAGIGLFDAIEEVSNGNYGQLSKEFKITLNEIKYGTNYIEAFEN 160

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + + + L  +    + ++     GGNL++ L  L+        +K K  +  + +    +
Sbjct: 161 LSKRINLPIMEKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLMILY 220

Query: 132 IIGSLPFCVSTLVYFTS 148
           +  ++   V   +   +
Sbjct: 221 MFTTVVIPVILFIMIIA 237


>gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
 gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
          Length = 292

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLS 66
                  P  LD++   V  G+ +   +  +  +       +       ++   + + ++
Sbjct: 144 RHISSRLPFLLDLMNVCVHTGMTIEATLEYLANELQTVDKYLAFTVNVTVQRSKV-IGIN 202

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++      +P  E   F   +    Q G ++ + L  L+  +R    M+ + +   + A
Sbjct: 203 KALEEFYEMVPSSEAQSFVMTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGA 262

Query: 127 KASAWIIGS 135
           K S  +I  
Sbjct: 263 KMSIPMIVF 271


>gi|305680235|ref|ZP_07403043.1| type II secretion system F domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659766|gb|EFM49265.1| type II secretion system F domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 290

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L +IV  ++AG  +  A+   +   ++P +R E          G S    + +     P
Sbjct: 101 MLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGSAGAELEQ----SP 156

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +  +S       +    G  L+  L N+   +  +   +++ +A    A A+A ++  LP
Sbjct: 157 ILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLALLP 216

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                + +         L +   G ++L    +    GI+    +I 
Sbjct: 217 LLGMVMGHAIGVNVPAFLTSGGVGGLILIAGVSAECAGILWSDHIIQ 263


>gi|145596965|ref|YP_001161262.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145306302|gb|ABP56884.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 300

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 50/154 (32%), Gaps = 3/154 (1%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  +  A+   V  + + ++ E R +      G     ++      +           + 
Sbjct: 129 GQGLQAAITGTVATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVCDQVVAALI 188

Query: 90  VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +     G  L + L +++         + +++A   + + +   +  +   V       +
Sbjct: 189 LHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAVLAY-GLLN 247

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             Y+      P G  ++ V     ++ +  +R M
Sbjct: 248 TDYIRP-YGTPTGQFVMAVLGVAFVVLLAWVRAM 280


>gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia
           sp. CCGE1003]
 gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp.
           CCGE1003]
          Length = 353

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+V         +  E          G +  +S+
Sbjct: 202 VDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLSGELEIAQRQFAAGRTREQSL 261

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R+      +++     ++    + GG + E L      LR+ +    + +   M  K +
Sbjct: 262 ARLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMT 321

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 322 GVMILTLLPALMIV 335


>gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA1]
 gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA3]
          Length = 249

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 13/153 (8%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S + + +        P Q+       +S     G  +SE L+  +  L+     K + +
Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 212

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
           A      A   ++   LP      V     G +
Sbjct: 213 ARKAGVDAIGPLVCCHLPAFSLVGVVPIIAGMV 245


>gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
 gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
          Length = 218

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 1/112 (0%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYM 76
             +DI+   + AGL    A+ +     S P+     R   +   GLS   + +  + R  
Sbjct: 80  EMVDIVRLGLSAGLSFDAALELYCDGRSGPLAVRLARAHVSWQSGLSTREDELRLVARET 139

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            ++ +  F+  +S   +LG  L+E L    R +R     + + +      K 
Sbjct: 140 GVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKL 191


>gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein
           [Limnobacter sp. MED105]
 gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein
           [Limnobacter sp. MED105]
          Length = 317

 Score = 60.5 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PV-RSEFRRVIE 57
           +K + + R A F  +    +D++      GL V  ++ V+  Q  D  P+     RR   
Sbjct: 154 LKTVGEGREAAFERELVAVVDVMRLLQGVGLSVDQSIEVMTSQLYDLVPITGRMLRRSRA 213

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G+     + RM       E   F  V+    + GG + E L   S  L +++   A
Sbjct: 214 QVKSGVPWIVMLKRMSSMYSSDEFKSFVQVLEQIEKFGGAVQEPLKQFSDRLVEKERANA 273

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K     +  K +  ++ ++   +  +
Sbjct: 274 KETMGKLTVKLTGVMVITMLPALLIM 299


>gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 332

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSIAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5]
 gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5]
          Length = 298

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++V S+ +G  V +A+  ++      V   F +V+       LS  
Sbjct: 81  KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVTLMTERKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++   
Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANG 200

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 201 LAVGLIILCGVIPATAGLI 219


>gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049]
 gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 815

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 45/108 (41%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ +  +R ++  D  P+ L+ +     AG+ V +++  + G     +  E  R+     
Sbjct: 467 VRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVRGSDIGVLTEEMHRIWADIR 526

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
           +G ++ +++ R  R +    V+   T+++      G L       +  
Sbjct: 527 MGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVFRIAATQ 574



 Score = 50.8 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIET 58
           +K+    R+    +     +  +    R G+  SD + V+    +       E    +  
Sbjct: 157 LKNQADVRSRNIDEGMARTIAFMYALSRGGMSFSDVMRVLARNQEIYGDTAREVGVAVRE 216

Query: 59  QHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             L G  +  ++  + R  P ++   F   +S   Q G +L+  L       ++    + 
Sbjct: 217 MDLFGRDMITALEHVSRRTPSEQFKTFIENLSSVLQSGQSLAPFLREQYERHQEEAAERQ 276

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +     +   A A++   +   +  +    
Sbjct: 277 EDLLERLATVAEAYVTVFVAAVLFLMTILL 306


>gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro]
 gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro]
          Length = 660

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P+ L  +     +G+ +++++ +I       +  E +++ E    G S S+
Sbjct: 445 RMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMGILSKELKKLKEDLSWGTSTSK 504

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  +   +     S    +I   ++   +L   L+  ++  R+ ++MK + ++ +M   
Sbjct: 505 ALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLSITAKQARNDEDMKKE-RSSTMVVY 563

Query: 128 ASAWIIGSLPFCVSTLVYFTS 148
                +    F     +  T+
Sbjct: 564 VITIYVAFFVFLFIVYILATN 584



 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLS 64
           R A        A+  +    + G+ + D    +   S        E   V+     LG  
Sbjct: 128 RQASIDKSMLPAITYMYALTKGGMSIYDVFRSLSRYSYIFGATAEEISYVVRDMDYLGKD 187

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              S+       P +    F   + +     G ++E + N S   +    M  +     +
Sbjct: 188 FITSLKIAKERTPSEIFKDFVDGLII-VSSSGTITEYVKNKSEQYQGLAEMANRNLLQRL 246

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  ++   +   +  +V      +   
Sbjct: 247 DVLAEIYVTALVAGPLFVMVTLVVLQFFLP 276


>gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD]
          Length = 337

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ V+          + SE          G +  +S+ 
Sbjct: 187 DELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQSLQ 246

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   +  K + 
Sbjct: 247 RLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKMTG 306

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +I +L   +  L+    PG ++VL
Sbjct: 307 VMIVTLLPAL--LIVTAGPGMISVL 329


>gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 671

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +   K  D   + L  +  +   G+ + +++ V+   SS  +  EFR +    + G SL 
Sbjct: 448 RSRRKITDSLSDDLRKLSSANDTGMTLLESIRVVADTSSGRLAEEFRVMYAKVNYGTSLK 507

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++    +IS   +    +++ L+  ++   ++ +++   ++ +   
Sbjct: 508 TALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDDIERNRKSRT--- 564

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +    II      +  ++      +++ +
Sbjct: 565 RMQMVIIIMTYVTLLGVMALLKVEFLDTM 593



 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 11/180 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62
           R  +      +++  +  ++  G    L + +A+A     +   V  EF+ ++       
Sbjct: 142 RKREINVLLSDSVSFMY-ALSVGGLNQLEILEAMAR-ADDTYGEVSQEFQSIVLETEYFD 199

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LRDRKNMKA---K 118
                +I       P +E+S F T +      GG++ + L +     +R  K  +    +
Sbjct: 200 TDYRTAIRNQAMQTPSEELSQFLTDMLSIINSGGDMEQFLEDQKEKHMRTSKQEQETVLE 259

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              L  E   +  +   L   +  ++         +L     G + L  A   +L+  +V
Sbjct: 260 TLELFGEMYMTLSLFPLLLIIIVVIMSMLGEAQDALLYGTVYGLIPLIGAGFLVLVSTVV 319


>gi|21221974|ref|NP_627753.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|4539573|emb|CAB38492.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 321

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 6   KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++R AK      +A+  +       VRAG    +A+      S+  +      V+     
Sbjct: 136 RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 192

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 193 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 252

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L    A   +G+  +  
Sbjct: 253 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGALESLGVWWVTR 312

Query: 182 MIN 184
           ++ 
Sbjct: 313 IVR 315


>gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 201

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 4/157 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++KKR  +   D P+ +  I   V AG+ + +A A +       +  E +R +E  +
Sbjct: 48  ISDVMKKRDMEISRDLPSIISKITLLVNAGMVLREAWAQVAQTGDTTLYKEMQRAVEDMN 107

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G+S  ++     +     +V  F + +      G  +L   L   S+I    K    + 
Sbjct: 108 NGMSEVDAYMDFSQRCQSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQ 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           Q  +  +K    +I      V  L+    P + N   
Sbjct: 168 QGETASSKM---LIPIGIMFVGILIMVIVPIFANFSF 201


>gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308378427|ref|ZP_07668749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308380757|ref|ZP_07669274.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308406205|ref|ZP_07669540.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|308328418|gb|EFP17269.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308352454|gb|EFP41305.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308360493|gb|EFP49344.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308364119|gb|EFP52970.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
          Length = 251

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 81  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 140

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 141 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 200

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V       G++    + +
Sbjct: 201 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 247


>gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 230

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 3/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG    +A+  +    S  +   +  V      G  + E++ R  R    + ++
Sbjct: 61  VAGELRAGRQPGEALLSV---PSGDLGERWGLVSAAARFGGDVPEALRRAARQPGAEGLT 117

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  ++  LR  +  +  ++A     K +  ++  LP     
Sbjct: 118 GVAACWQVAVDEGAGLAAGLDRVASALRAEREQREILRARLAGPKVTVAVLAVLPAFGLV 177

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +        ++ L++ P G   L         G + +R  + 
Sbjct: 178 MGAALGTEPLHQLLHTPVGLGCLLGGCLLEWAGFVWLRRSMR 219


>gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7]
 gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7]
          Length = 283

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 63/146 (43%), Gaps = 1/146 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59
           +K  +  +   F +  P+ +  +  ++ AG+ +S A+ +        ++ EF R + +T+
Sbjct: 130 LKQDLSMKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDGDIKKEFVRFLADTE 189

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                +++    + +  P +    F +V+    + G  +SE L   +  + D   +K + 
Sbjct: 190 RNQDDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEE 249

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q    E  ++A   G +   ++ L+ 
Sbjct: 250 QGKKNEIVSTAISTGFIFIPITALLI 275


>gi|117929188|ref|YP_873739.1| putative integral membrane protein [Acidothermus cellulolyticus
           11B]
 gi|117649651|gb|ABK53753.1| putative integral membrane protein [Acidothermus cellulolyticus
           11B]
          Length = 272

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYM------PLQ 79
           +R+G   +DA+A   G+   P +   F  + +    G  +       V         PL 
Sbjct: 98  LRSGRVPADALAAAAGEMHHPALARLFVAIADAARHG-DIDRVTELFVTPTAKIGGPPLA 156

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           +++ ++    +  + G  L+  +   +  ++   ++  +VQ      +A+  ++G+LP  
Sbjct: 157 DLARYAPCWRIGVESGAGLARLVERTANAIQADVDLHQEVQTALAAPRATIRLLGALPIA 216

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                          L   P G   L  A A  + G++  R +
Sbjct: 217 GLLFGTVIGVASWQFLFRHPLGLACLSAAVALEVGGLLWCRRI 259


>gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099]
 gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC
           43099]
          Length = 684

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 55/155 (35%), Gaps = 3/155 (1%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  +   GL + ++   +   ++  +  EF  +    + G SL 
Sbjct: 460 RHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVADTTNGKLAREFELMHTKVNYGTSLK 519

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++  + +I+   +    +++ L   +    +  +++ + ++ +   
Sbjct: 520 AALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERERKSRT--- 576

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +    II      V  ++      +++ +     G
Sbjct: 577 RMQVVIIIMTFLTVLAVIAILKTQFIDTMAGLEAG 611


>gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 337

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ V+          + SE          G +  +S+ 
Sbjct: 187 DELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRTREQSLQ 246

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   +  K + 
Sbjct: 247 RLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRLTVKMTG 306

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +I +L   +  L+    PG ++VL
Sbjct: 307 VMIVTLLPAL--LIVTAGPGMISVL 329


>gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1]
 gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 692

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R      + P+ LD    +  AG+   ++    V      +  E  R       G  
Sbjct: 460 ARRRRKAIEAEVPDFLDRFASTNEAGMAAVESFGRTVDGDLGALTQELERTWADIQWGAR 519

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  +++R    +    VS    + +      GNL   L   +      + ++   +    
Sbjct: 520 IEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNEL- 578

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               +  ++  + F V   +            N P G      + A   +
Sbjct: 579 ---LTYVVVIYVSFFVFIAIIVALDTIFIP--NIPTGAATQAGSGASSAV 623



 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 53/151 (35%), Gaps = 7/151 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIET 58
           ++   +R  +        +  +    R+G+P+++ + ++                 V + 
Sbjct: 144 RYAAGERARRIDASMERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDI 203

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KN 114
            + G  +  ++ R+    P  +++ F+  +    Q G +L   L        +     ++
Sbjct: 204 DNYGADIITALERVGSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQS 263

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              ++ A   EA  +  + G L      +V 
Sbjct: 264 QFLELLATLAEAYVTVLVAGPLFLITILVVI 294


>gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M]
 gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M]
          Length = 372

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 5/145 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+V         + SE          G +  +S+
Sbjct: 221 VDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLASELEIAQGQFAAGRTREQSL 280

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           SR+      +++     ++    + GG + E L      LR+ +    + +   M  K +
Sbjct: 281 SRLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAVKMT 340

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNV 154
             +I +L   +  ++    PG M+V
Sbjct: 341 GVMILTLLPAL--MIVTAGPGVMSV 363


>gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 697

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  S   GL + +++  +   +S  +  EF  +    + G SL 
Sbjct: 462 RHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVSDTTSGKLAREFEMMHTKVNYGTSLK 521

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++        +  ++  + +I+   +    +S+ L   +R   +  +++ + ++ +   
Sbjct: 522 QALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERERKSRT--- 578

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +    II      V  ++      +++ +
Sbjct: 579 RMQVVIIIMTFMTVLAVIAILKTQFIDTM 607



 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 63/177 (35%), Gaps = 7/177 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62
           R  +      +++  +  ++  G    L + +A+A     +   V  EF+ +++      
Sbjct: 151 RRRQINMLLTDSVSFMY-ALSVGGLNQLEIIEAMAQ-ADDTYGEVAKEFQSIVKETEYFD 208

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +    +I +     P  E+S F T +      GG++   L +           + ++   
Sbjct: 209 IDYRTAIRKQALETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQELTLE 268

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++E     ++  SL   +  ++           + +   +M +        +G ++M
Sbjct: 269 TLELFGEMYMTLSLFPLLLIIIMVVMQMIPQASVTNTMLYMTVYALIPLTGVGFLIM 325


>gi|115376375|ref|ZP_01463612.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366582|gb|EAU65580.1| flp pilus assembling protein [Stigmatella aurantiaca DW4/3-1]
          Length = 90

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 53/90 (58%)

Query: 98  LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           ++E    +S ++R+R  ++ K+ AL+ + K   WI+ S+P  +  ++    P  M  +++
Sbjct: 1   MAEMFETISMVIRERFRLEGKIDALTSQGKLQGWIVASMPAVLGMVLNSMRPDLMEPMMD 60

Query: 158 DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              G++L+ V A   ++GI+++R ++N D+
Sbjct: 61  HMFGYVLVTVIAIMEILGILIIRRIVNIDI 90


>gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 274

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +       +     +V  
Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +  I   L   +  +V   SP  + ++
Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 271


>gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
 gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
          Length = 264

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K +I +R    L   P  +DI    V++G+ +  +++    +       +     ++ +
Sbjct: 104 IKKIIARRVESILKSLPFFIDITAACVQSGMTIDSSLSYAARKFELINPDLSLIILKMAK 163

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  + +     E+  F + +      G  + + L  LS+ +R+ + +  
Sbjct: 164 RAEIN-GLESAIKELHQCSTATEIKMFCSTLQYSISFGSTVYDQLIKLSQDIREMQLLVT 222

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  +   +   +  +V   SP  + ++
Sbjct: 223 EEKISKLSTKLTLPLFIFI--LIPFVVLVISPSVLELI 258


>gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
 gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
          Length = 236

 Score = 60.1 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 87  HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 146

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            S + + +        P Q+       +S     G  +SE L+  +  L+     K + +
Sbjct: 147 DSRAWNDLASVEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKK 199

Query: 121 ALSMEAKASAWIIGS-LPFCVSTLVYFTSPGYM 152
           A      A   ++   LP  +   V     G +
Sbjct: 200 ARKAGVDAIGPLVCCHLPAFLLVGVVPIIAGMV 232


>gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
           20098]
 gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
           20098]
          Length = 448

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            ++  ++  +LG  +   L ++S   R     +   +      +A+  ++ +LP     L
Sbjct: 114 LASACALSERLGCEVHRCLQSVSDSYRRECKARDLRKEAFAAPQATIRLMSALPLATVAL 173

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             F     +  L + P G   L   + + ++G++ +R +
Sbjct: 174 GEFMGAHPITFLFSSPTGLACLVAGSVWYVLGLLWIRRL 212


>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 256

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 1/110 (0%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESI 69
           +     P  L ++  +V AG+ + +A  V+ G    P  + FRRV+    + GL++ E++
Sbjct: 36  RLEGQIPQVLRMVADAVGAGMGLREAFEVVAGMGLYPANAVFRRVLSLAEVGGLAVDEAL 95

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            R+   +P      F+ +++  ++ G  L E L   +R      + + ++
Sbjct: 96  WRVASELPSPNFRRFALIVAEGARSGARLGEVLGVAARSFAVVVDFRREL 145


>gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
 gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
          Length = 301

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              + P  L+ +  S+ AG  + DAV  +   S   + +E  RV+ + + GL   E++  
Sbjct: 168 LTAELPVVLEFLALSLSAGEGILDAVRRVSQVSGGELSNELARVVASVNTGLPFGETLGA 227

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           + R + L   +     I      G  LSE L   ++  R+    ++K + L +  K    
Sbjct: 228 LARELELPPFNRCVDQILGALDRGTPLSEVLQAQAQDARE----ESKRELLELAGKKEVA 283

Query: 132 IIGSLPFCV 140
           ++  L   +
Sbjct: 284 MLFPLVSGL 292


>gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304]
 gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 651

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L  +  +  +G+P+  A+ +I    + P+R E  ++      G+SLS+++ R    +
Sbjct: 437 PIFLSKLASANESGMPIYRAITMIAKTDTSPLRKEIAKIKADLDWGISLSDALVRFANRL 496

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            + E+S   T+++   +  GN++E L   ++     + ++ +             I+   
Sbjct: 497 KIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRERMTNMF---MYVIIVYIA 553

Query: 137 PFCVSTLVYFTSPGYMNVLIND 158
            F    +VY  S  +++ L   
Sbjct: 554 FFVFIGIVYIISSTFLSTLAES 575



 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 13/184 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQH-L 61
           I  R +K     P+A+  +    + G+ +   +  +    +    V  E  R++     L
Sbjct: 130 ISDRKSKINRILPHAIIFMYSLSKGGMSLVQILKALADNHEVYGEVSKEASRILWEVEGL 189

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA---- 117
           G  L  +++  V   P      F   +      GG+++      +    +R         
Sbjct: 190 GKDLRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFL 249

Query: 118 KVQALSMEAKASAWIIGSLPFCVS-TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAF 171
           +   L  E   +A++ G L   +  T++          + +      P G  +  +    
Sbjct: 250 EFLGLMAETYITAFVAGPLFLIIIQTVMSVMGQTNEVAMFSIIYFVIPIGSFMFAMLIKL 309

Query: 172 MLIG 175
           +  G
Sbjct: 310 LTPG 313


>gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 365

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 2/171 (1%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            K   D   A   ++ S+R+G+P+ +A+  I    +D    EF +++E   LG+ L E+I
Sbjct: 186 KKVERDILFAARDMIISLRSGMPLFNAIVSISTGYAD-ASKEFAKIVERVQLGMPLEEAI 244

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            + +               SV  + G ++  AL  +   L   + ++ +     + A A 
Sbjct: 245 DQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQERYIELRRYGQRLNAIAM 304

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVM 179
            +++  +      +   T       L    P     + V   F+ +  ++M
Sbjct: 305 FYMLFGVILPSMGIAVVTILTTFIALFTVTPILLYAVLVGIGFLQVVFLIM 355


>gi|313140673|ref|ZP_07802866.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133183|gb|EFR50800.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 252

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPV-RSEFRRVIETQHL-GLSLSESISR 71
               +  +  SVRAG  +SD +A +   G +  P+  S  +R++  Q + G S +++   
Sbjct: 80  LSGVIAHMSSSVRAGGMISDVLADVDGSGFAGVPLTASRLKRLLMRQRMPGESAAQA--- 136

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              ++  +     +   ++  + G +L++ L  +    R  + +    ++     +A+A 
Sbjct: 137 --EHVAFE----LAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAA 190

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++G+LP     L        + VL    +G+  L V  A   +G++ M  M+ 
Sbjct: 191 LLGALPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 243


>gi|330465092|ref|YP_004402835.1| type ii secretion system f domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328808063|gb|AEB42235.1| type ii secretion system f domain protein [Verrucosispora maris
           AB-18-032]
          Length = 301

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 3/154 (1%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  +  A+   VG + + ++ E R +      G     ++      +           + 
Sbjct: 130 GQGLQQAIIGTVGTAPEEIQDEVRLLAARLQAGWLARSALLAFADEIGDPVCDQVVAALI 189

Query: 90  VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +     G  L + L +++         + +++A   + + +   +  +           +
Sbjct: 190 LHLTDRGERLGDVLGSIASAAAAEVTTRREIEAKRTQPRFAVRFLTGMTLATIAY-GLFN 248

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             Y+      P G +++ +  A  +  +  +R M
Sbjct: 249 AEYVQP-YGTPFGQLVMALLGAAFVGLLAWVRSM 281


>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
          Length = 277

 Score = 59.7 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271


>gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
 gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
          Length = 321

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 158 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 217

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 218 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 277

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 278 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 313


>gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 680

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            A       + L  +  +   G  + +++  +   SS  +  EF  +    H G+SL E+
Sbjct: 459 RAAITGKLSDNLRKLSSANDTGQTLLESIKTVSDTSSGKLADEFEVMHAKVHYGMSLKEA 518

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        +  ++    +I+   +    ++E L   ++   ++ +++ +        + 
Sbjct: 519 LVEFNNKYHIPRLARTVKLITKAQEASSQITEVLTTAAQASENQDDIERE---RISRTRM 575

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              II      +  ++      +++V+
Sbjct: 576 QVAIILMTYVTLLAVMAILKTQFLDVM 602


>gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 264

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +  +I +RT   L   P  +DI    V++G+ + ++++    +       +     R+I+
Sbjct: 104 INKVIIRRTESVLKSLPFFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIK 163

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +       E+  F + +      G ++ + L NLS+ +R+ + +  
Sbjct: 164 RAEIN-GLESAIKELHHSSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVT 222

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +      L   +  +V   SP  + +L
Sbjct: 223 EERISKLSAKLT--FPLFLFILIPFVVLVISPSVLEIL 258


>gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15843271|ref|NP_338308.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551]
 gi|31794828|ref|NP_857321.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121639571|ref|YP_979795.1| putative transmembrane protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663520|ref|YP_001285043.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|148824861|ref|YP_001289615.1| transmembrane protein [Mycobacterium tuberculosis F11]
 gi|167970803|ref|ZP_02553080.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|215424898|ref|ZP_03422817.1| transmembrane protein [Mycobacterium tuberculosis T92]
 gi|218755437|ref|ZP_03534233.1| transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|219559729|ref|ZP_03538805.1| transmembrane protein [Mycobacterium tuberculosis T17]
 gi|224992068|ref|YP_002646757.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800699|ref|YP_003033700.1| hypothetical protein TBMG_03698 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233154|ref|ZP_04926480.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C]
 gi|260184575|ref|ZP_05762049.1| hypothetical protein MtubCP_00757 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198698|ref|ZP_05766189.1| hypothetical protein MtubT4_00792 [Mycobacterium tuberculosis T46]
 gi|289441088|ref|ZP_06430832.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289445252|ref|ZP_06434996.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555919|ref|ZP_06445129.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289571895|ref|ZP_06452122.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289748170|ref|ZP_06507548.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289763834|ref|ZP_06523212.1| conserved transmembrane protein [Mycobacterium tuberculosis GM
           1503]
 gi|294992922|ref|ZP_06798613.1| hypothetical protein Mtub2_00045 [Mycobacterium tuberculosis 210]
 gi|297636334|ref|ZP_06954114.1| hypothetical protein MtubK4_19510 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733327|ref|ZP_06962445.1| hypothetical protein MtubKR_19645 [Mycobacterium tuberculosis KZN
           R506]
 gi|306778013|ref|ZP_07416350.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306786567|ref|ZP_07424889.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306790932|ref|ZP_07429254.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791252|ref|ZP_07429554.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306795319|ref|ZP_07433621.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306801287|ref|ZP_07437955.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306805499|ref|ZP_07442167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306974130|ref|ZP_07486791.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|313660659|ref|ZP_07817539.1| hypothetical protein MtubKV_19645 [Mycobacterium tuberculosis KZN
           V2475]
 gi|2960082|emb|CAA17980.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13883629|gb|AAK48122.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551]
 gi|31620425|emb|CAD95868.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121495219|emb|CAL73705.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124602947|gb|EAY61222.1| hypothetical protein TBCG_03580 [Mycobacterium tuberculosis C]
 gi|148507672|gb|ABQ75481.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|148723388|gb|ABR08013.1| conserved transmembrane protein [Mycobacterium tuberculosis F11]
 gi|224775183|dbj|BAH27989.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322202|gb|ACT26805.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289414007|gb|EFD11247.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289418210|gb|EFD15411.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440551|gb|EFD23044.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289545649|gb|EFD49297.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289688757|gb|EFD56186.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289711340|gb|EFD75356.1| conserved transmembrane protein [Mycobacterium tuberculosis GM
           1503]
 gi|308213542|gb|EFO72941.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308328819|gb|EFP17670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308332686|gb|EFP21537.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308340172|gb|EFP29023.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308344146|gb|EFP32997.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308347947|gb|EFP36798.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308351901|gb|EFP40752.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308356402|gb|EFP45253.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|323717517|gb|EGB26719.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326905493|gb|EGE52426.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328460428|gb|AEB05851.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 266

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 96  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 156 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V       G++    + +
Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262


>gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
 gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
          Length = 272

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K++I  R    L   P  +DI    V++G+ +  +++    +       +     +V  
Sbjct: 115 VKNIITSRNKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVTR 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  
Sbjct: 175 RAEIN-GLESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLVT 233

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +  I   L   +  ++   SP  + +L
Sbjct: 234 EEKISKLTAKLT--IPLFLFILIPFIILVISPSVLELL 269


>gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
 gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
          Length = 330

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++     R    +D+ P  +D++      GL +  ++ V+       +    SE      
Sbjct: 168 VQRRAASRRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 QFAAGRTREQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 330

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+          + SE          G +  +S+
Sbjct: 180 VDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSM 239

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++   + ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 240 QRLSSGFDNEDLRAIARLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMT 299

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
             ++ +L   +  L+    PG++ V+
Sbjct: 300 GVMVLTLLPAL--LIVTAGPGFLAVM 323


>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
           31758]
          Length = 277

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 117 IKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271


>gi|119025148|ref|YP_908993.1| hypothetical protein BAD_0130 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764732|dbj|BAF38911.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 256

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 7/160 (4%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
           SVR+G  +  A   +      P    E  R      + +    S+    +++        
Sbjct: 98  SVRSGATLVQAFEEL---QGAPFAVPELTRF--RIDMAVRSRCSLQEQHKHVDQLGAE-L 151

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
               ++  QLG  +S  L  ++  L+ R+ +           +A+  ++ +LP     L 
Sbjct: 152 HAACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLG 211

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                  +  L+ D +G M LG A     +G   +R ++ 
Sbjct: 212 ECMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 251


>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
 gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
 gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
 gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
 gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
 gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
 gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
 gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
 gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
 gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
           [Yersinia pestis CA88-4125]
 gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
 gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Nepal516]
 gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis Pestoides A]
 gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
 gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
 gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 277

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 117 IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 236 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 271


>gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
 gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
          Length = 332

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSLAAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
 gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
           2782]
          Length = 296

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIET 58
           + + +KKR  +   +FP+ ++ +   + AGL +S A   I   S        E ++ +  
Sbjct: 137 LTNKVKKRRLEIQLEFPDFINKLTLLLNAGLTMSKAWEKISLDSKKVSAFHKEVKKTVAQ 196

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G+S +E+     + +   E+S   ++I   S+ GG +L   L   S    + +    
Sbjct: 197 LKTGVSEAEAFGEFAKRLKTPEISRVMSIIIQNSKKGGYDLVMTLKLQSNESWEIRKNAV 256

Query: 118 KVQALSMEAKA 128
           +        K 
Sbjct: 257 RRLGEEASTKL 267


>gi|239981063|ref|ZP_04703587.1| hypothetical protein SalbJ_16622 [Streptomyces albus J1074]
 gi|291452929|ref|ZP_06592319.1| integral membrane protein [Streptomyces albus J1074]
 gi|291355878|gb|EFE82780.1| integral membrane protein [Streptomyces albus J1074]
          Length = 285

 Score = 59.3 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + + VR+G     A+   VG++     +E   V      G  ++ ++         + +S
Sbjct: 119 LAQEVRSGRQPVAALLHAVGEARGLGGAE-AGVTAAARFGGDVAGALREAAGAPGAEGLS 177

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  +  L+  LR  ++  A + A    A+++  ++ +LP     
Sbjct: 178 GLAACWEVAVDRGAGLASGVERLAAALRAERDQAADLAAQLAGARSTVLMLAALPLLGLV 237

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L +      + VL++ P G   L + +A    G+     ++ 
Sbjct: 238 LGWAMGADPLRVLLHTPAGLACLLMGSALESAGLWWALGIVR 279


>gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
 gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
          Length = 306

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLS 66
           R  +       AL I+   +R+GL    A+          + SE          GL + +
Sbjct: 157 RKKQMERHLSEALSILCLGLRSGLSFDRALEKYCASFPTMLASELSGAHMAWMTGLTTRT 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++  +        +      I    + G  L++AL  L+   R  +      + +    
Sbjct: 217 EALHAVASKYDSPLIRRVMDSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKAPV 276

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K    +   +   +  +V 
Sbjct: 277 KMMIPVGTLILPSMLLMVL 295


>gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C]
 gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C]
          Length = 305

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 65/178 (36%), Gaps = 4/178 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R  +  +     L+ +     AG+ +   +      +  P+ +  R + E    G+ 
Sbjct: 105 AEQRIERL-EAIGQWLNGLAGIHTAGISLVQTIRASARNAPAPIAANVRALDERLRSGMD 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             ++ +     +    V   + +  S  + +G  LS AL  L+  +  +      +++  
Sbjct: 164 SKQAFALFADELGDGVVDHVALLFQSHAANMGPGLSTALEALAVTIHQQAADARDIESDR 223

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            + + S+ I+  +  C+  +    +  + +     P G + L +        +  +R 
Sbjct: 224 AKIRKSSRIVSIV-ICIVFVGCMLNEAW-SAWYQSPAGQLALAILGGLFAWTLSWLRR 279


>gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 265

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 69/160 (43%), Gaps = 6/160 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +K+++ KRT   L   P  +DI    V++G+ +  A+     +    +  +     ++ +
Sbjct: 105 IKNILYKRTESVLKSLPFFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKMSK 164

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  + +     E+  F + +      G ++ + LA LS+ +R+ + + +
Sbjct: 165 RAEIN-GLELAIKELHQCSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVS 223

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + +   +  K +  +   +   +  +V   SP  + +L +
Sbjct: 224 EEKVSKLSTKLTFPLFIFI--LIPFIVLVISPSVLELLTH 261


>gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 646

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 53/113 (46%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +++        P+ L+ +    R GL ++ A+ V+V  +   +  E RR+      G S+
Sbjct: 420 RRKLKSIESSIPDFLERLSGINRVGLTIAGAINVLVKANLGLISYEIRRIKRDLEWGASV 479

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           ++++ R    +    ++   T+I+  S++ G++ E L   S   R  + +K +
Sbjct: 480 NDALIRFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKE 532



 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL-GLS 64
           RT K      NA+  +    R G  + D    +   +     V  EFR+V+      G  
Sbjct: 124 RTTKINLSLHNAVSYMFAMRRGGAEMLDIFRSMSENAVVYGEVAIEFRQVLRDAEYFGHD 183

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  +    P +++  F   +   +  GGN+SE L    R+ ++    +      ++
Sbjct: 184 LISALENLSMTTPSEKLKDFLEDLVSVTGSGGNISEYLEGRVRMYQEEARFEQLQFLSTL 243

Query: 125 EAKASAWIIGSL--PFCVSTLVYFT 147
           +  A A++   +  P  +  ++   
Sbjct: 244 QIVAEAYVTVFVAGPLFLVIIMVVM 268


>gi|254381326|ref|ZP_04996691.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340236|gb|EDX21202.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 305

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 68/175 (38%), Gaps = 3/175 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           L+   +    +   +R G  + +A+ +      + +  E   +++  H+G   ++++   
Sbjct: 101 LEALGDWTQRLANVLRLGRGLDEALQISRKGCPEDIAGEVGDLVDRLHVGWRPTDALRHF 160

Query: 73  VRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +           + +  +  G  L++AL +L+  + +    +  ++A   + + +  
Sbjct: 161 GDALDDVTADKVVAALVLSAADRGPGLAQALDDLAESVHEEVARRRAIEADRAKPRTTMR 220

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +  +   V+   +   P Y           +L  +AA F+ + + +MR + +  
Sbjct: 221 WMTIITLGVAGAGFLI-PSYTAPYGTLLGQLVLGVLAAGFVGV-LALMRQIADVK 273


>gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 319

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  +   R  +   + P  +D++      GL +  ++ ++    S  +     E      
Sbjct: 156 LGRIAAGRRERIARELPLFVDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANR 215

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +   S+ R+      +++    +++    + GG + E L      LR+R+  + 
Sbjct: 216 QYSQGRTREHSLHRLATLHGNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEM 275

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +   +  K +  ++ +L   +  ++    PG++ + 
Sbjct: 276 KERIGKITVKMTGVMVSTLLPAL--VIVTAGPGFIAIF 311


>gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 284

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 12/175 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+           A  +I     AG P+  ++A     +S P++   R V     
Sbjct: 111 LNRVYKRARLLLKRQLRQARLLIALLTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIG 170

Query: 61  LGLS----------LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
                         + E+   M   + L E + F+ +++  ++    L + +   S  + 
Sbjct: 171 ASEDAKDAGMRVQTVVEAFMGMAERLHLPEATQFAQLLTQSARYNTPLVDMM-FTSLDIE 229

Query: 111 DR-KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           +R ++ +A+++  +  +K S      L   V   ++     Y   ++ +  G  L
Sbjct: 230 ERIRDTEAELRYNNAISKISYISTLGLGIPVFGYLFLAVFSYALQILGNGFGISL 284


>gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2]
 gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 298

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++V S+ +G  V +A+  ++      V   F +++       LS  
Sbjct: 81  KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++   
Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANG 200

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 201 LAVGLIILCGVIPATAGLI 219


>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
          Length = 193

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 33  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 92

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 93  RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 151

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 152 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 187


>gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 627

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  +  +R  K  +  P+ L  +     +GL +  A+ ++   +   + SE  ++ +   
Sbjct: 404 LVEIRNRRVRKIEEHIPDFLKQLASLNESGLNIVSAIRILSTSNLGVLTSEIIKIRKDLE 463

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LS+++ R  R +    V+  ++++    +  G + +AL   +   +    +K +V+
Sbjct: 464 WGMLLSDALKRFERRIGSMTVTKVTSILLRAMEAAGTIKDALFTAATDAQLYLELKKRVR 523

Query: 121 ALSMEAKASAWIIGSLPFCVSTL-VYFTSPGYMNVL 155
                      ++  + F V    ++  S  +M + 
Sbjct: 524 NE----MFVYIVVIYMTFGVFLFTIFVLSNNFMQIF 555



 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 6/181 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64
           R  +    FP+ +++++   R G+ V +   VI  + S    V  EF  ++    +    
Sbjct: 124 RRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEVSVTGEVGKEFAVIVNGVEMFHKD 183

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  +    P Q  + F        +  G LSE L   S+ L D +     +   S+
Sbjct: 184 LISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQDLFLNSL 243

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              A  ++   +   +  L+ F     M +L +     M L +     + G+  + L+ +
Sbjct: 244 GILAEVYVAALVVAPLFMLIIFV---VMGMLGSTTMHLMQLLIYLYMPIGGLAFIWLLSS 300

Query: 185 F 185
            
Sbjct: 301 M 301


>gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 317

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISR 71
           + P  +D++      G+ +   + VI          +  E +   +    G +   S  R
Sbjct: 168 ELPLFVDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGR 227

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M        ++  ++++    + GG + E L      LR+++  K K     +  K +A 
Sbjct: 228 MSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAV 287

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           ++ +L   +  ++    PG++ V+
Sbjct: 288 MVVTLLPAL--IIITAGPGFLAVI 309


>gi|150399783|ref|YP_001323550.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012486|gb|ABR54938.1| type II secretion system protein [Methanococcus vannielii SB]
          Length = 298

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++V S+ +G  + +A+  ++      V S F +++       LS  
Sbjct: 81  KMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+  +   +  +     S +I    + GG L+  L  L++ L D +N+K+++ +++   
Sbjct: 141 DSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISVTGNG 200

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 201 LAVGLVILCGVIPATAGLI 219


>gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 332

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIE 57
           ++     R      + P  +D++      GL +  ++ V+          +  E      
Sbjct: 169 VRRRATARRQSLGAELPLLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQR 228

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 229 QFAAGRTREQSLQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATL 288

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + Q   +  K +  +I +L   +  L+    PG M VL
Sbjct: 289 REQIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVL 324


>gi|327334808|gb|EGE76519.1| hypothetical protein HMPREF9344_00673 [Propionibacterium acnes
           HL097PA1]
          Length = 256

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRSLAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +         L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus
           metallidurans CH34]
 gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus
           metallidurans CH34]
          Length = 369

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ +IV +    +     E +R  +    G S  +++ 
Sbjct: 217 DELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTLL 276

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+ +    +++    T+++   + GG + E L      L+  +  + K +   +  K + 
Sbjct: 277 RIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMTG 336

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ SL   +  L+    PG++ V+
Sbjct: 337 VMVVSLLPVL--LILTAGPGFLGVM 359


>gi|310830507|ref|YP_003965608.1| hypothetical protein PPSC2_p0147 [Paenibacillus polymyxa SC2]
 gi|309249974|gb|ADO59540.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 313

 Score = 58.9 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 68/184 (36%), Gaps = 5/184 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS--SDPVRSEFRRVIETQHL 61
              +R         + + ++++        S A+ +   +    +P+ +E R+ +   +L
Sbjct: 124 RKNRRVVMMEKQIGSFMHMVIKRYETTREFSKALELSTIEFKGEEPLYTELRKTVLDINL 183

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL--SEALANLSRILRDRKNMKAKV 119
           G  +++S+  + R    + ++ FS    + S +G +    + L    +   + +  K   
Sbjct: 184 GKPVTDSMDALARRTGNKYLARFSDYYKIASSIGTDEIRKKLLEQAYKQFEENRVNKQTT 243

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-LLGVAAAFMLIGIMV 178
           +         A+I+       +     T+  Y++ +     G +  + + A FM     +
Sbjct: 244 KKELATVVREAYIMLGSIPMFAIYQVMTNDKYIDFMTETFLGKVGSVIIIAVFMGAVWFI 303

Query: 179 MRLM 182
              +
Sbjct: 304 NNKI 307


>gi|328759517|gb|EGF73126.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 288

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADKLDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I  +   +   +      ++  L   P G +L+ VA    +  ++ M  M  
Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPLATPP-GQILVAVAVVMYVTALVQMYRMAR 275


>gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 270

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A      P   D++   + AG    +A   +    + PV     R      LG    E+ 
Sbjct: 123 ALIARQLPITADLLASCLSAGAGPREAAEAVGESVAGPVGERLARTAAVILLGGEPDEAW 182

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R      L   +  +  ++  S  G   +E ++ L+  +R  +   A  +A       +
Sbjct: 183 RRFGE---LPGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLIT 239

Query: 130 AWI-IGSLPFCVSTLV 144
           A + +  LP  ++  V
Sbjct: 240 APVGLCFLPAFLAVGV 255


>gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens
           Pf-5]
 gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens
           Pf-5]
          Length = 294

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 63/154 (40%), Gaps = 5/154 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           + +  K+R      +    + ++     +G+ V  A+ V+  ++      +  E R ++ 
Sbjct: 134 LAYAAKRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILA 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L   +++    + + E +    ++      GG   ++L  L ++L DR+  + 
Sbjct: 194 RVDSGLELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +     M AK S  ++  L    + L+    PG+
Sbjct: 254 QEYISKMSAKMSVVMMLFL--FPALLIVLAGPGF 285


>gi|256396008|ref|YP_003117572.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
 gi|256362234|gb|ACU75731.1| putative integral membrane protein [Catenulispora acidiphila DSM
           44928]
          Length = 290

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 58/165 (35%), Gaps = 2/165 (1%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +++   + +   +  AV      + + +      +          ++++  +   +    
Sbjct: 111 EMLRDVLSSAAGLEQAVLASTTVAPEAIAGPLAALGSDLRARRPFADAMRALAAQLGDAT 170

Query: 81  VSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                  +    +    NL+E L  L+   R + ++  +V A   + + S   I  +   
Sbjct: 171 ADQVIVSLIHAQKFQAKNLAELLGELAAAARAQVSLAVRVHAERAKHRTSQRAITVIFTL 230

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++  +    P ++    +   G M++ V  A     +  +++++ 
Sbjct: 231 MALGLCVFYPKFLRP-YDTVGGQMVMAVVVAMFAGALCWIQIILR 274


>gi|289424514|ref|ZP_06426297.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289155211|gb|EFD03893.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|313765313|gb|EFS36677.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313793204|gb|EFS41271.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313802707|gb|EFS43925.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313814295|gb|EFS52009.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313815408|gb|EFS53122.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313828806|gb|EFS66520.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|314916035|gb|EFS79866.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314917187|gb|EFS81018.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314921686|gb|EFS85517.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314930991|gb|EFS94822.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314955078|gb|EFS99484.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314959118|gb|EFT03220.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314964616|gb|EFT08716.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314969716|gb|EFT13814.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
 gi|315078729|gb|EFT50755.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315099517|gb|EFT71493.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315101976|gb|EFT73952.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315110101|gb|EFT82077.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327454502|gb|EGF01157.1| hypothetical protein HMPREF9581_00677 [Propionibacterium acnes
           HL087PA3]
 gi|327456571|gb|EGF03226.1| hypothetical protein HMPREF9586_00950 [Propionibacterium acnes
           HL083PA2]
 gi|327457153|gb|EGF03808.1| hypothetical protein HMPREF9584_00349 [Propionibacterium acnes
           HL092PA1]
 gi|328756266|gb|EGF69882.1| hypothetical protein HMPREF9579_00755 [Propionibacterium acnes
           HL087PA1]
 gi|328757047|gb|EGF70663.1| hypothetical protein HMPREF9588_01290 [Propionibacterium acnes
           HL025PA2]
          Length = 256

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +         L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|154486514|ref|ZP_02027921.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis
           L2-32]
 gi|154084377|gb|EDN83422.1| hypothetical protein BIFADO_00329 [Bifidobacterium adolescentis
           L2-32]
          Length = 260

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           SVR+G  +  A   +  Q +     E  R      + +    S+    +++         
Sbjct: 102 SVRSGATLVQAFEEL--QGAPFAVPELTRF--RIDMAVRSRCSLQEQHKHVDQLGAE-LH 156

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              ++  QLG  +S  L  ++  L+ R+ +           +A+  ++ +LP     L  
Sbjct: 157 AACTLSLQLGCEMSRCLEAVAASLKRRRLLDDLRANAFAMPQATVKLLMALPLLTVMLGE 216

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                 +  L+ D +G M LG A     +G   +R ++ 
Sbjct: 217 CMGAHPLRFLVEDVKGWMCLGFAGCCYAVGWYWIRRLMR 255


>gi|50841724|ref|YP_054951.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202]
 gi|50839326|gb|AAT81993.1| hypothetical protein PPA0231 [Propionibacterium acnes KPA171202]
          Length = 256

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +         L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus
           assembly [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 274

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +       +     +V  
Sbjct: 117 VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +  I   L   +  +V   SP  + ++
Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 271


>gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
 gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
          Length = 267

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 4/151 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL--SL 65
           RT   L   P  +DI    V++G+ + ++++    +           +++    G    L
Sbjct: 114 RTESILKSLPFFIDITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMTKRGEINGL 173

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
             +I  + +    +E+  F + +      G  + + L  LS+ +R+ + +  + +   + 
Sbjct: 174 ESAIKELHQCTTAKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEERISKLS 233

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           AK +  I   L   +  +V   SP  + ++ 
Sbjct: 234 AKLT--IPLFLFILIPFIVLVISPSILEIIT 262


>gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 248

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 4/174 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESIS 70
            +   +AL II   +R GL   DA+A +  +  +  P+ +           G S ++ ++
Sbjct: 74  QEALSSALGIIAGDLRCGLGTWDALARVAQEPTTHAPLAAACAAAARRARAGGSAADVLA 133

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                  +  +   + V  +    G +++  +  L   + DR   + + +A    A+A+A
Sbjct: 134 DYSH--SIAGLQRVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAALQGAQATA 191

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     +        +  L+N+  G  LL V  A    G++  + +I 
Sbjct: 192 IVLSLLPLFGLGMGIGLGAPVLAFLLNNAIGQTLLIVGTALQCAGLLWSQALIK 245


>gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 274

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+++ +RT   L   P  +DI    V++G+ + ++++    +       +     +V +
Sbjct: 117 VKNIVARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTK 176

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  
Sbjct: 177 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 235

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +  I   L   +  +V   SPG + ++
Sbjct: 236 EEKISKLTAKLT--IPLFLFILIPFVVLVVSPGILELI 271


>gi|119715778|ref|YP_922743.1| integral membrane protein [Nocardioides sp. JS614]
 gi|119536439|gb|ABL81056.1| integral membrane protein [Nocardioides sp. JS614]
          Length = 299

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 2/185 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
              +R  + ++      + +  +  A   +  A+   VG +   +R+  R +       +
Sbjct: 88  RAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRV 147

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            L E+++R    +           +S+   Q  G L   L +L+   R    M+ KV+  
Sbjct: 148 PLPEALARFADDVDDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHE 207

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               +  A  I         L    + G++    + P G ++L + AA  +   + MR +
Sbjct: 208 RRALRRQAQRIAFAVLGFVALQAVFARGWVEP-YSTPLGQLVLAILAAIFVGSFVRMRSL 266

Query: 183 INFDV 187
            N +V
Sbjct: 267 SNGEV 271


>gi|215413583|ref|ZP_03422251.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496925|gb|EFI32219.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis
           94_M4241A]
          Length = 266

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 96  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 156 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V       G++    + +
Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWPDRITD 262


>gi|295129801|ref|YP_003580464.1| hypothetical protein HMPREF0675_3278 [Propionibacterium acnes
           SK137]
 gi|291376757|gb|ADE00612.1| conserved hypothetical protein [Propionibacterium acnes SK137]
 gi|313772773|gb|EFS38739.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313810913|gb|EFS48627.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313831678|gb|EFS69392.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834347|gb|EFS72061.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313840369|gb|EFS78083.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314974781|gb|EFT18876.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314977019|gb|EFT21114.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314985440|gb|EFT29532.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|315082166|gb|EFT54142.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315097274|gb|EFT69250.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|327331301|gb|EGE73040.1| hypothetical protein HMPREF9338_00673 [Propionibacterium acnes
           HL096PA2]
 gi|327447320|gb|EGE93974.1| hypothetical protein HMPREF9570_01603 [Propionibacterium acnes
           HL043PA1]
 gi|327450234|gb|EGE96888.1| hypothetical protein HMPREF9571_00214 [Propionibacterium acnes
           HL043PA2]
 gi|328761170|gb|EGF74713.1| hypothetical protein HMPREF9343_01124 [Propionibacterium acnes
           HL099PA1]
          Length = 256

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +    Q +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAQAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +         L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
 gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
          Length = 289

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  +  R  + L D P  L  +   V +G+ + DA           +  E +       
Sbjct: 137 LQDKLTARRQEILMDLPQVLSKLTLLVNSGMVLRDAWKRTAITGERALYKEMQNTSLEID 196

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
            G+  +++         ++EV  F+++I    Q G   L+  L ++S  + + K  + K 
Sbjct: 197 NGIMEADAYRNFADRCSVKEVRKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQ 256

Query: 120 QALSMEAKA 128
           +     ++ 
Sbjct: 257 KGEKANSRL 265


>gi|311896986|dbj|BAJ29394.1| hypothetical protein KSE_35900 [Kitasatospora setae KM-6054]
          Length = 360

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 66/171 (38%), Gaps = 4/171 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMV 73
           +    +   +R G     A+  ++ +++      + +E    +     G  L  ++  + 
Sbjct: 145 DLCTGLAAELRGGATPEQAMHTVLARAAPEWGRRLGAEPAARLAAGRYGADLPAALRLVA 204

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                +  +  +    V ++ G  L++ L  ++  LR  + +  ++       + +  ++
Sbjct: 205 ELPGGEGAAAMAACWRVSTESGSGLADGLEQVAEALRAERALSEEIAGELAGPRTTVAVL 264

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             LP     L        ++VL++ P G + L V A   ++GI+    ++ 
Sbjct: 265 AVLPAVGLGLGAALGAHPVHVLLHTPAGLLGLLVGAVLEVVGIVWTARIVR 315


>gi|238062113|ref|ZP_04606822.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
 gi|237883924|gb|EEP72752.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
          Length = 301

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
             G  +  A+   +  + + +  E R +      G     ++      +           
Sbjct: 128 STGQGLQQAILGTLATAPEEIEEEVRLLAARLQAGWLAKSALLAFADEIGDPVCDQVVAA 187

Query: 88  ISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           + +     G  L + L +++         + +++A   + + +   +  +          
Sbjct: 188 LILHLSDRGERLGDVLGSIAGAAAAEVATRREIEAKRTQPRFAVRFLTGMTLLTLAY-GL 246

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIM-VMRLM 182
            +  Y+      P G +++ V      +G++  +R M
Sbjct: 247 VNTDYIRP-YGTPFGQLVMFV-LGSAFVGLLAWVRAM 281


>gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
 gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
          Length = 288

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 3/186 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R       +P+ +D +V +VR+GL + D++  +        RS F        
Sbjct: 97  ISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSLMTLSQTGPLVTRSAFAAFAARYR 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKV 119
              + S ++  +   +           + +  ++GG  L+  L +LS  LR    +++++
Sbjct: 157 ATGNFSIAVDELKVALADPVADRILETLRMSREVGGSELTNVLRSLSVYLRQEAAIRSEI 216

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +A       +A +  + P+ V  L+  T P       N   G  L+       L+   +M
Sbjct: 217 EARQSWVMNAARLGLAAPWVVLFLLT-TRPEA-AAAYNSASGVALIVAGLILSLVAYRIM 274

Query: 180 RLMINF 185
             +   
Sbjct: 275 AGIGRL 280


>gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 264

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLS 66
              +D+ P  +D++      GL +  ++ V+          + SE          G +  
Sbjct: 110 QAVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTRE 169

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +S+ R+      +++     ++    + GG + E L      LR+ +    + +   +  
Sbjct: 170 QSLQRLASGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTV 229

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K +  +I +L   +  L+    PG ++V+
Sbjct: 230 KMTGVMIVTLLPAL--LIVTAGPGMISVM 256


>gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972]
 gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972]
          Length = 296

 Score = 58.6 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           ++    +R     ++   A+ ++    + GL +   +     ++SD    +  +   +I 
Sbjct: 136 IRMQANRRAKIIDEEMLTAVHMMAILWQVGLSLERLLKTYHQEASDLTPEMNKDIALIIA 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +       M             +++S  S+ GG L ++  +L+ +L +RK +  
Sbjct: 196 RIDAGQNREWVFRDMATLTLSTGFQDLLSMLSQGSETGGGLKKSFQSLADLLYERKRVAL 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   M  K S  ++  +    +  +    P  + ++
Sbjct: 256 QEKVTKMSGKISVTMMALM--FPALFIILGGPAALALM 291


>gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL096PA2]
 gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL096PA3]
 gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL099PA1]
          Length = 147

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + +  
Sbjct: 8   QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67

Query: 75  ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P Q+       +S     G  +SE L+  +  L+     K + +A      A  
Sbjct: 68  VEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIG 120

Query: 131 WIIGS-LPFCVSTLVYFTSPGYM 152
            ++   LP  +   V     G +
Sbjct: 121 PLVCCHLPAFLLVGVVPIIAGMV 143


>gi|289675690|ref|ZP_06496580.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 184

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + +   P  LD  VRS+++G  ++DAV   +  +  P++    R+     LG+SL +
Sbjct: 116 RVRRMIQQLPQLLDHTVRSLKSGRTLADAVLHGIDATDQPLKDGMSRIERNVQLGVSLPD 175

Query: 68  SISRMVRYM 76
           +        
Sbjct: 176 AARDFAELY 184


>gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 285

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 3/175 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           L+        +   +R G+ +  A+      + D +  +   + +   LG    E++   
Sbjct: 73  LEALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAF 132

Query: 73  VRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +        +  + +     G  L++AL +L+  +R+    K  ++A   + + +  
Sbjct: 133 ADELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVR 192

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +  +      +  F  P Y     +   G ++LG   A  +  + +MR +  F 
Sbjct: 193 WMTFI-TVGVVVAGFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 245


>gi|224283518|ref|ZP_03646840.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310288221|ref|YP_003939480.1| conserved hypothetical membrane spanning protein [Bifidobacterium
           bifidum S17]
 gi|311065088|ref|YP_003971814.1| hypothetical protein BBPR_1760 [Bifidobacterium bifidum PRL2010]
 gi|309252158|gb|ADO53906.1| conserved hypothetical membrane spanning protein [Bifidobacterium
           bifidum S17]
 gi|310867408|gb|ADP36777.1| Conserved hypothetical protein, TadB-like protein [Bifidobacterium
           bifidum PRL2010]
          Length = 230

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPV-RSEFRRVIETQHL-GLSLSESISR 71
               +  +  SVRAG  +SD +A +   G +  P+  S  +R++  Q + G S +++   
Sbjct: 58  LSGVIAHMSSSVRAGGMISDVLADVDGSGFAGVPLTASRLKRLLMRQRMPGESAAQA--- 114

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              ++  +     +   ++  + G +L++ L  +    R  + +    ++     +A+A 
Sbjct: 115 --EHVAFE----LAVACAMCERSGCSLADCLDVVGENHRISRLLHDSRRSAFAVPRATAA 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           ++G+LP     L        + VL    +G+  L V  A   +G++ M  M+ 
Sbjct: 169 LLGALPLVTIGLGELLGARPVQVLFGSAQGNACLAVGGAGYALGLLWMSSMMR 221


>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
 gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
          Length = 617

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
            +G+P+  A++++    + P+R E R++      GL LS +  R    + + +V+   T+
Sbjct: 426 ESGVPIYRAISILAKTDTSPLRDEIRKIKTDIDWGLDLSRAFVRFANRIRVFDVTRVVTM 485

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           ++   +  GNL+E L   ++     + +K +       +  +  II  + F V   + + 
Sbjct: 486 LNEAMKTTGNLTEVLVISAKEASRSELIKRERY----YSMMTYTIIIYVAFFVFIGITYI 541



 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 13/178 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLG-LS 64
           R +K      +A+  +      G  +      +         V  E  R+++    G + 
Sbjct: 125 RKSKIDRMLHHAVAFMHALSIGGTDIYRIFKTLAEHQDVYGEVSREVSRIVKDVEYGGMD 184

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQ 120
           L  +++  V   P +    F   +      GG++   L           R  +    ++ 
Sbjct: 185 LRSALTNAVELSPSENYKEFLHGLITVIDSGGDIRSYLEERVEYFFEKARQSQKAFLELL 244

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAAAFM 172
            +  E+  +A +   L   +  +V            Y  + +  P G  L       M
Sbjct: 245 GMMAESYVTALVAAPLFLMIIEIVMLLMGEGNEYVLYAVIYLFIPIGSALFAGIVKMM 302


>gi|260202856|ref|ZP_05770347.1| hypothetical protein MtubK8_00867 [Mycobacterium tuberculosis K85]
 gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289536735|gb|EFD41313.1| transmembrane protein [Mycobacterium tuberculosis K85]
          Length = 266

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 96  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 155

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 156 PAYWERLAVWWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V       G++    + +
Sbjct: 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262


>gi|329939412|ref|ZP_08288748.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329301641|gb|EGG45535.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 316

 Score = 58.2 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG    +A+      S   +      V+     G  +  +++   R    + +
Sbjct: 150 VLAGEVRAGRQPGEALRHAAQDSGG-LGGARAAVLAAARFGGDVPGALTEAARGPGAEGL 208

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L   LR  ++ +A ++A    A+++A ++  LP    
Sbjct: 209 LGLAACWRVAVDRGAGLAAGLDRLEAALRAERDQRADLRAQLAGARSTAVMLAGLPVLGL 268

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        ++V+++   G M L   A     G+     ++ 
Sbjct: 269 LLGTALGADPLHVVLHTGPGLMCLLAGAVLEAAGLWWALRIVR 311


>gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394864|gb|AAS02734.1| hypothetical protein MAP_0417 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 267

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           ALD++V  +RAG     A  V  G+++ PV    R V     LG  ++  ++   R    
Sbjct: 97  ALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAASRSSAR 156

Query: 79  QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            E     +    +    G  ++  +    R + +R+   A+V +    A+A+A I+ +LP
Sbjct: 157 PEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALP 216

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V A     G++    +++
Sbjct: 217 VLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263


>gi|160931310|ref|ZP_02078710.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753]
 gi|156869694|gb|EDO63066.1| hypothetical protein CLOLEP_00147 [Clostridium leptum DSM 753]
          Length = 288

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 5/173 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR + A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQIAAVLPQGRDIITAVRISRPRAPKMIAESVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M  M  
Sbjct: 224 QITLVTIAMFGALLVIGRAFLAPLATPP-GQVLVAVAIVMYVIALVQMYRMAR 275


>gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289696370|gb|EFD63799.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
          Length = 221

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 1/165 (0%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L  
Sbjct: 53  ELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPA 112

Query: 81  V-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP  
Sbjct: 113 YWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLL 172

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        ++ L+    G  LL V       G++    + +
Sbjct: 173 GVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 217


>gi|289424230|ref|ZP_06426013.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289154927|gb|EFD03609.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
          Length = 291

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 229 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 268


>gi|295129571|ref|YP_003580234.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|291376277|gb|ADE00132.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
          Length = 291

 Score = 58.2 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 229 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 268


>gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 252

 Score = 57.8 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 92  LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 151

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 152 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 211

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG+M +
Sbjct: 212 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 246


>gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6]
 gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6]
          Length = 298

 Score = 57.8 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++V S+ +G  V +A+  ++      V + F +V+       LS  
Sbjct: 81  KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGILEVDAVFSKVVVLMTERKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++   
Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANG 200

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 201 LAVGLIILCGVIPATAGLI 219


>gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
 gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. D5]
          Length = 410

 Score = 57.8 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 12/162 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--------SSDPVRSEFR 53
           K ++  R  +   D+P  +      + AG+ V  A   +  +               E  
Sbjct: 250 KQVLADRKKQLAADYPQLISQFTLFLGAGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMS 309

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDR 112
             +     G+S  E   R      L     F  ++S   + GG  L+E L   +    + 
Sbjct: 310 YTMHEIQGGVSEGECYERFGSRCGLPAYRRFGALLSQNLRKGGRGLNELLRKEAADAFED 369

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  +A+        K    +   L   +  +V    P + ++
Sbjct: 370 RKKQARKLGEEAGTKLLGPMFLMLAVVLIIIVV---PAFFSI 408


>gi|126437755|ref|YP_001073446.1| type II secretion system protein [Mycobacterium sp. JLS]
 gi|126237555|gb|ABO00956.1| type II secretion system protein [Mycobacterium sp. JLS]
          Length = 262

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 1/171 (0%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +   +AL+++V  +R G     A     G+    V    R V     LG  ++  +    
Sbjct: 87  ESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVADSLRAVAARARLGADVAAGLHDTA 146

Query: 74  RYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
           R   L       +    +    G +++  +    R + +R+   ++V A    A+A+A +
Sbjct: 147 RKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRVSAGMAGARATAAV 206

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  LP     L          +L+    G  LL +       G++    + 
Sbjct: 207 LAGLPVLGIGLGQMIGADPGRLLLGGGAGGWLLLIGVTLSCAGLLWSDRIT 257


>gi|313817685|gb|EFS55399.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314961705|gb|EFT05806.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315086655|gb|EFT58631.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 293

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|313792523|gb|EFS40609.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803524|gb|EFS44706.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806902|gb|EFS45400.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313814177|gb|EFS51891.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313821488|gb|EFS59202.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824567|gb|EFS62281.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826238|gb|EFS63952.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313839669|gb|EFS77383.1| type II secretion system F domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314926290|gb|EFS90121.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314964235|gb|EFT08335.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314980211|gb|EFT24305.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314987067|gb|EFT31159.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990440|gb|EFT34531.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078858|gb|EFT50876.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315083127|gb|EFT55103.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088059|gb|EFT60035.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327333718|gb|EGE75435.1| membrane spanning protein [Propionibacterium acnes HL096PA3]
 gi|327444423|gb|EGE91077.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327457369|gb|EGF04024.1| type II secretion system F domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 293

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|313771160|gb|EFS37126.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313811814|gb|EFS49528.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313832350|gb|EFS70064.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832809|gb|EFS70523.1| type II secretion system F domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314975242|gb|EFT19337.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977657|gb|EFT21752.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985158|gb|EFT29250.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315081601|gb|EFT53577.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315097118|gb|EFT69094.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332545|gb|EGE74280.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
 gi|327446676|gb|EGE93330.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448881|gb|EGE95535.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328759744|gb|EGF73340.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 293

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|332674441|gb|AEE71257.1| type II secretion system protein [Propionibacterium acnes 266]
          Length = 273

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 91  VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 150

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 151 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 210

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 211 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 250


>gi|328757930|gb|EGF71546.1| type II secretion system F domain protein [Propionibacterium acnes
           HL020PA1]
          Length = 293

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|314922727|gb|EFS86558.1| type II secretion system F domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965811|gb|EFT09910.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315094494|gb|EFT66470.1| type II secretion system F domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315105215|gb|EFT77191.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328988|gb|EGE70748.1| membrane spanning protein [Propionibacterium acnes HL103PA1]
          Length = 293

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 679

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  +   G+ + ++V V+   S   +  EF  +    + G SL 
Sbjct: 456 RSRKTIIGSLSENLRKLASANDTGMTLLESVQVVSTTSGGKLSEEFEIMHAKVNYGTSLK 515

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++        +  ++    +IS   +    +   L+  ++   ++ ++  +        
Sbjct: 516 DALREFNNKYHVPRLARTVKLISEAQEASSQIQNVLSTAAQASENQDDIDRE---RIART 572

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +    II      +  ++      +++V+
Sbjct: 573 RMQVVIILMTYLTLLGVMALLKTQFLDVM 601


>gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
          Length = 336

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V      +     E      
Sbjct: 173 LRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++      GG + E L      LR+ +    
Sbjct: 233 QFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQFGDRLREARRAML 292

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +   +  K +  +I +L   +  +
Sbjct: 293 RERIGRLAVKMTGVMIVTLLPALMIV 318


>gi|282853084|ref|ZP_06262421.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
 gi|282582537|gb|EFB87917.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
          Length = 291

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 109 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 168

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 169 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 228

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 229 VVLAGALILGREYLIP-YRTGVGQLLLCCYAGLYLAGLIAL 268


>gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z]
 gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z]
          Length = 625

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K     P+    +   V+  + ++ A+ +   +    ++ + R +      G  LS
Sbjct: 405 RRIDKVEGALPDFCRQLSSLVKYNMTLTHAIELTAQEGKSYIQEDIRILSRDLLWGEKLS 464

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ R    M    V     ++S       +LS  +       + R+++K + +     +
Sbjct: 465 SALKRFADRMKNLSVDRLVILLSQTEHFTNDLSLTIDLQYHEAKARESLKRERK-----S 519

Query: 127 KASAWIIGSLP-FCVSTLVYFTSPG-YMNVLIND 158
               +++     F V   V       ++N+++ +
Sbjct: 520 DMGVYVVIVFMAFAVFVFVQVIMSEVFLNIMMEN 553



 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 60/189 (31%), Gaps = 12/189 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL- 61
           ++ R           +  +      G  +  +V  I            EFR+V+      
Sbjct: 100 MRSRKRFIEASMYEMVSFMYALHHCGATLYASVHSIAKYADFYGDAAKEFRQVVSDMDFC 159

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     +I R+    P  ++ FF + +S   +  GN    L    + ++    +  +   
Sbjct: 160 GYDQFTAIQRLADTTPSDKLRFFLSELSSTYRSIGNAEVFLHGKLQEMQKESEVAQRSYL 219

Query: 122 LSMEAKASAWI--------IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            S+ A A  +I           +   V  L+  + P  + +++        +        
Sbjct: 220 SSLGAIAEMYITLFVAGPLFVVIVIMVIGLISGSDPMILAIVVYLMLPIGTVIFLLLLDA 279

Query: 174 IG-IMVMRL 181
           +G   +++ 
Sbjct: 280 LGQTYIIKR 288


>gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 289

 Score = 57.8 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 71/181 (39%), Gaps = 4/181 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K R A+  +        +   + AG+ +  A+   +  +   +  + R +    +   S
Sbjct: 96  AKARIARL-EALEEWTRSLSGVLVAGVGLEQALVSTLRSAPTVLEPQLRLLTARLNARWS 154

Query: 65  LSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              ++      +        +  + +   + G  L+  LA+L+  +      + +++A  
Sbjct: 155 TEAALRAFADDLDDATGDLVAANLILAARRRGAGLATVLASLADSVAADVRSRRQIEADR 214

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            + +A+A  +  +   V  ++ F+   Y+    + P G ++L +  A  +  ++ ++ + 
Sbjct: 215 AKPRATARWVTIISAGVLLVLTFSG-QYVQP-FSTPLGQVVLALLLAAYVATLVWLKRLS 272

Query: 184 N 184
           N
Sbjct: 273 N 273


>gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
 gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
          Length = 430

 Score = 57.8 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFRRVI 56
            K R  + L D+P  ++     +  G+   +    IV    +            E R   
Sbjct: 273 RKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIVKNYEEQKICTGERAAYEEMRYTC 332

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115
                G++ +E+  R  +   +     F  +++   + G   +++ L N S    + +  
Sbjct: 333 NEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLKKGTKGMTDLLRNESDQAFENRKS 392

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +AK        K  A + G L   +  ++    P ++++
Sbjct: 393 RAKRLGEEAGTKLLAPMFGMLAIVLVIVIV---PAFLSM 428


>gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA2]
          Length = 147

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + +  
Sbjct: 8   QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67

Query: 75  ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P Q+       +S     G  +SE L+  +  L+     K + +A      A  
Sbjct: 68  VEVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIG 120

Query: 131 WIIGS-LPFCVSTLVYFTSPGYM 152
            ++   LP      V     G +
Sbjct: 121 PLVCCHLPAFSLVGVVPIIAGMV 143


>gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4]
 gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4]
          Length = 330

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++     R    +D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 168 VQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++   + ++    + GG + E L      LR+ +    
Sbjct: 228 QFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RDRIGRLTVKMTGVMVVTLLPAL--LIVTAGPGLLAVM 323


>gi|314982954|gb|EFT27046.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091258|gb|EFT63234.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 293

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLIP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
 gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
          Length = 249

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 6   KKRTAK-FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +R  +      P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+ 
Sbjct: 100 HRRMEQHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVP 159

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            S + + +        P Q+       +S     G  +SE L+  +  L+
Sbjct: 160 DSRAWNDLASVEVWRDPAQD-------VSRAVNSGEGISELLSAHAAQLQ 202


>gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
 gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
          Length = 330

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +K     R    +D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 168 VKRRAAARRQSVVDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 HFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG + V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|118466209|ref|YP_879790.1| type II secretion system protein F [Mycobacterium avium 104]
 gi|118167496|gb|ABK68393.1| bacterial type II secretion system protein F domain [Mycobacterium
           avium 104]
          Length = 267

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           ALD++V  +RAG     A  V  G+++ PV    R V     LG  ++  ++   R    
Sbjct: 97  ALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAARARLGADVAAGLAAASRGSAR 156

Query: 79  QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            E     +    +    G  ++  +    R + +R+   A+V +    A+A+A I+ +LP
Sbjct: 157 PEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALP 216

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V A     G++    +++
Sbjct: 217 VLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLLWADRIVD 263


>gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 330

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++     R     D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 168 VQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGVAQR 227

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 228 QFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAML 287

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  ++ +L   +  L+    PG++ V+
Sbjct: 288 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAVM 323


>gi|50841533|ref|YP_054760.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|50839135|gb|AAT81802.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|315107454|gb|EFT79430.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 293

 Score = 57.4 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4]
 gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4]
          Length = 298

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            LD++  + ++G+ V  A+  +       S  + +  +            S +   + + 
Sbjct: 159 FLDLLATATKSGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDIS-NNGFSIAGENLRKS 217

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + L EV  F+ V+    + G  +++AL  LS+ +R+   ++ + +   + AK    +I  
Sbjct: 218 LDLPEVRDFTAVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMGIPLILF 277

Query: 136 LPFCVSTLVYFTSPGYMNVL 155
           + F +  +V   +PG +N+L
Sbjct: 278 IMFPI--IVEIIAPGVLNLL 295


>gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 267

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 116 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 175

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 176 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 235

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 236 GVMILTLLPALFIV 249


>gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 317

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 30  GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           G+ +   + VI          +  E +   +    G +   S +RM        ++  ++
Sbjct: 183 GMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVYQSDNLANLTS 242

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +++   + GG + E L      LR+++  K K     +  K +  ++ +L   +  ++  
Sbjct: 243 LMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTLLPAL--IIVT 300

Query: 147 TSPGYMNVL 155
             PG++ V+
Sbjct: 301 AGPGFLAVM 309


>gi|289427386|ref|ZP_06429099.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|289159316|gb|EFD07507.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
          Length = 293

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 2/161 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + ++  S   G  V DA+     Q+ + +     RV+           ++  +   +   
Sbjct: 111 VRLVSGSASTGKSVIDAIRATRRQAPELLIEPLTRVVARLDSRWDTRAALQGLADDLDSA 170

Query: 80  EVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +       I + ++ GG   +  L  L+  L++R     +++    + +     +  +  
Sbjct: 171 DADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVERAKPRVVVRQVSIIIG 230

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V          Y+        G +LL   A   L G++ +
Sbjct: 231 VVLAGALILGREYLVP-YRTGVGQLLLCCYAGLYLAGLIAL 270


>gi|225022081|ref|ZP_03711273.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945202|gb|EEG26411.1| hypothetical protein CORMATOL_02114 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 290

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L +IV  ++AG  +  A+   +   ++P +R E          G S    + +     P
Sbjct: 101 MLTLIVGELQAGATMGAALTACLPTLTEPELRREITVAARRCATGGSAGAELEQ----SP 156

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +  +S       +    G  L+  L N+   +  +   +++ +A    A A+A ++  LP
Sbjct: 157 ILALSLMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLALLP 216

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                + +         L     G ++L    +    GI+    +I 
Sbjct: 217 LLGMVMGHAIGVNVPAFLTGGGVGGLILIAGVSAECAGILWSDHIIQ 263


>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 205

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIE 57
           +K+ + KRT   L   P  +DI    V++G+ + +++     +       +     +V +
Sbjct: 45  IKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTK 104

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I  +  Y P  E+  F + +      G  + E L +LS+ +R+ + +  
Sbjct: 105 RAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMT 163

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     +  K +  +   L   +  ++   SP  + +L
Sbjct: 164 EESISKLSTKLTLPL--FLFILIPFVLLVISPSILELL 199


>gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 682

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +     +      L  +  +   G  + ++V  +   SS  +  EF  +    + G+SL 
Sbjct: 456 RSRQAVVGKLSENLRKLSSANDTGQTLLESVKTVSDTSSGKLADEFEVMHAKVNYGMSLR 515

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++        +  ++    +IS   +    +++ L+  ++   ++ +++ + ++ +   
Sbjct: 516 SALVEFNNKYHIPRLARTVKLISKAQEASSQITDVLSTAAQASENQDDIERERKSRT--- 572

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +    II      +  ++      +++V+
Sbjct: 573 RMQVAIILMTYLTLLAVMAILKTQFLDVM 601



 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG----LPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-G 62
           R  +     P+A+  +  ++  G    L + +A+      +   V  EF+ +++     G
Sbjct: 147 RKREINMLLPDAISFMY-ALSVGGLNQLEILEAMGR-AEDTYGEVAREFQSIVQETEYFG 204

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL----ANLSRILRDRKNMKAK 118
                +I       P  E+S F T +      GGN+ + L        R  +  + M  +
Sbjct: 205 TDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNMEQFLDDKKEKHLRTAKQEQEMTLE 264

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              L  E   +  +   L   +  ++        ++L     G + L      +L+
Sbjct: 265 TLELFGEMYMTLSLFPLLLIIILVIMSMLGQAQQSLLYATVYGLIPLTGVGFLVLV 320


>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 204

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 44  LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 103

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 104 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 163

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG+M +
Sbjct: 164 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 198


>gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 319

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 3/175 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           L+        +   +R G+ +  A+      + D +  +   + +   LG    E++   
Sbjct: 107 LEALSEWTQRLAGLLRLGMGLEQAMITSRKGAPDALAEQITGLSDRLRLGWRPEEALRAF 166

Query: 73  VRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
              +        +  + +     G  L++AL +L+  +R+    K  ++A   + + +  
Sbjct: 167 ADELDDVTADKVTAALILSVNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVR 226

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
            +  +      +  F  P Y     +   G ++LG   A  +  + +MR +  F 
Sbjct: 227 WMTFI-TVGVVVAGFFVPSYTAP-YSTLLGQLVLGFLTAGFVATLALMRQLGAFR 279


>gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54]
          Length = 256

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 29  AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            GL +  ++ V++ + +     +  E R   E    G +  +S++R+       ++S   
Sbjct: 120 VGLSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 179

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +I+   Q GG + E L      LR+++ ++ K +      K +A +I +L   +  +
Sbjct: 180 RLIAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPALLIV 237


>gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 716

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++ ++      +FP+ L  +  +   G+ + D++ ++    S  + +E R +      G+
Sbjct: 494 IMSRKKKHLERNFPDFLKKLASTNETGMTLRDSIKLMAKSKSGHLGNEIRMIWADISWGM 553

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++++S+ R    +  Q ++   T+I+  ++  G++ E L   +R     ++MK + +A+S
Sbjct: 554 NVNDSLIRFANRLRTQVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMKRE-RAMS 612

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           M        I  L F    ++Y  S  ++  +
Sbjct: 613 MMIYIVIIYISFLVFV--GVIYVISTTFLAEM 642



 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 15/191 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQ 59
           K    +R        P A+  +    + G+ + +   ++    S    V  E   +I   
Sbjct: 175 KFQASERKGDIDRQLPYAVTFMYALSKGGMNIIEVFRLLSRSGSTYGEVSKEINAIIREM 234

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR----KN 114
              G  +  +IS +    P    +     +      GG++     + +     +    + 
Sbjct: 235 DYFGYDMKTAISNISERSPSDRFNELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEK 294

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +   L  E+  +A++ G L   +  +        M  ++      M+  +  A + I
Sbjct: 295 GFLETLGLLAESYVTAFVAGPLFIIIMGV--------MMAVMGSGSEVMVYAIIYAVLPI 346

Query: 175 GIMVMRLMINF 185
           G ++  +MI+ 
Sbjct: 347 GSLMFVVMISI 357


>gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M]
 gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1]
 gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2]
 gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M]
          Length = 330

 Score = 57.4 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESIS 70
           ++ P  +D++      GL +  ++ V+       +    SE          G +  +S+ 
Sbjct: 181 NELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRTREQSLQ 240

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   +  K + 
Sbjct: 241 RLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQFGDRLRETRRALLRERIGRLTVKMTG 300

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++ +L   +  L+    PG + V+
Sbjct: 301 VMVLTLLPAL--LIVTAGPGMLAVM 323


>gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 275

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIE 57
           +K +I ++T   L  FP  +D+    ++AG+ + +A+        + ++ + S   +V+ 
Sbjct: 115 IKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENALTYSAENFYKINEDIASLIIQVVR 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  ++  + + +   E+  F   +      G ++ E L   S  +R+ + M++
Sbjct: 175 KAEV-HGLQNAMKTLYQDVSFLEIKMFCNAVQNSVDFGSSVYEHLMKFSTDIREIQLMES 233

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
           + +   +  K +  +       +  ++   S   + + + DP
Sbjct: 234 EEKISKLSVKLTLILFLF--ILIPFILLIISTTALELFLGDP 273


>gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris
           StLB046]
          Length = 391

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 24  VRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              +RAG+ + +A  ++  Q +S P++    +V E    G+  S+++ +  +  P     
Sbjct: 62  ATLIRAGVSLVEATNILAKQSTSKPLKKALEKVEEDVRAGIPFSDAVQKHPKVFP----E 117

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            F  ++    +  GN+ + L  L+        +  KVQ+        A ++  +   V  
Sbjct: 118 LFVNMMR-SGEATGNIDDTLDRLANSYEKSFRLIKKVQSTLT---YPAMLLILIVVVVFF 173

Query: 143 LVYFTSPGYMNVL 155
           ++ F  P ++   
Sbjct: 174 MLIFIVPTFVESF 186


>gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus
           bromii L2-63]
          Length = 291

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 4/149 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K  I KR+ + L DF   +  +     AG+ + +A   +    +  + +E +  +   + 
Sbjct: 139 KKRILKRSDELLHDFSEVVSKLALLTNAGMILREAWQEVAFAGTSTIYTEMQTTVNEMNN 198

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQ 120
           G+S  +++        + E+  F++ I      G   L+  L   S+ +     +K ++ 
Sbjct: 199 GVSEIDAMFNFGSRCIIPEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVW---QLKKQLV 255

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
               E  AS  +I      V  L+    P
Sbjct: 256 RREGEKAASKLLIPICVMFVGILIMIIVP 284


>gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
 gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
          Length = 336

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V      +     E      
Sbjct: 173 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 232

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 233 QFAAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 292

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +   +  K +  +I +L   +  +
Sbjct: 293 RERIGRLAVKMTGVMIVTLLPALMIV 318


>gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3]
 gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3]
          Length = 329

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           ++     R     ++ P  +D++      GL +  ++ VI          +  E      
Sbjct: 166 IRRKAAARRESVAEEMPLFVDMLRLLQGVGLSLDQSMQVISHDFTTMLPVLSWELGVAQR 225

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LRD +    
Sbjct: 226 QFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQVDKHGGAVQEPLRMFGDRLRDGRRALL 285

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   +  K +  +I +L   +  L+    PG M V+
Sbjct: 286 RERIGRLTVKMTGVMIVTLLPAL--LIVTAGPGIMTVV 321


>gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99]
 gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
           Agy99]
          Length = 264

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+I+V  +R G     A  V   ++  PV +  R V     LG  ++  +    R   L
Sbjct: 97  ALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSAL 156

Query: 79  Q-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R +  R+   AKV A    A+ASA I+  LP
Sbjct: 157 PAHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAGILAGLP 216

Query: 138 FCVSTLVYFT 147
                L    
Sbjct: 217 VLGVVLGQLI 226


>gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 294

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288


>gi|282853287|ref|ZP_06262624.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|282582740|gb|EFB88120.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|314965660|gb|EFT09759.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314982824|gb|EFT26916.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315091475|gb|EFT63451.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315094229|gb|EFT66205.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|315104881|gb|EFT76857.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
 gi|327329208|gb|EGE70968.1| hypothetical protein HMPREF9341_00681 [Propionibacterium acnes
           HL103PA1]
          Length = 256

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 5/160 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +      +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAHAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               + +         L     G   L  +     +G++ 
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 242


>gi|256786940|ref|ZP_05525371.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 234

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 6   KKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           ++R AK      +A+  +       VRAG    +A+      S+  +      V+     
Sbjct: 49  RERRAKERRQ--DAVIALCGTLAGEVRAGRQPGEALLCAAQDSAG-LGEAQAAVLAAARF 105

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  +  +++        + +   +    V    G  L+  L  L   LR  ++ ++ ++A
Sbjct: 106 GGDVPGALALAAGQPGAEGLRGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRSDLRA 165

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
               A+A+A ++  LP     L        ++VL++   G   L        +G+  +  
Sbjct: 166 QLAGARATAVMLAGLPVLGLLLGVALGSDPLHVLLHTGAGVGCLLAGGVLESLGVWWVTR 225

Query: 182 MIN 184
           ++ 
Sbjct: 226 IVR 228


>gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 297

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMVRYMPLQE 80
              V AGL    A+         P+  E +R +E    Q      +  +  +   + + E
Sbjct: 162 AVGVAAGLTPWAALKEAAQGGDGPLYREVKRALEEGEAQARSGPRTAVLGALAEELGVPE 221

Query: 81  VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            S F+ ++    + G      A+ +  R +R+ +  K +  A   ++K    ++  +   
Sbjct: 222 FSSFAELVCQAIEYGAEGFVSAIEDAVRHMREVRRAKLEAAAQKAQSKMLVPLLVLVGAM 281

Query: 140 VSTLV 144
           +  L+
Sbjct: 282 MCFLL 286


>gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74]
 gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74]
          Length = 312

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 64/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  +    
Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALHDAR 217

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310


>gi|294630591|ref|ZP_06709151.1| integral membrane protein [Streptomyces sp. e14]
 gi|292833924|gb|EFF92273.1| integral membrane protein [Streptomyces sp. e14]
          Length = 283

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   VRAG    +A+      S     +    V+     G  +  +++   R    + + 
Sbjct: 118 LAGEVRAGRQPGEALLCAARDSGG-FGAAEAAVLAAARFGGDVPGALAAAARRPGAEGLR 176

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  L  L   LR  ++ +  ++A    A+A+A ++  LP     
Sbjct: 177 GLAACWRVTVDQGAGLAAGLDRLEAALRADRDQRCDLRAQLAGARATAVMLAGLPVLGLL 236

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        ++VL++   G   L V       G+     ++ 
Sbjct: 237 LGTAMGADPLHVLLHTGAGLGCLVVGGVLEGAGLWWASGIVR 278


>gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4]
          Length = 268

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 117 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 176

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 177 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 236

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 237 GVMILTLLPALFIV 250


>gi|302864764|ref|YP_003833401.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501058|ref|YP_004079945.1| type ii secretion system f domain protein [Micromonospora sp. L5]
 gi|302567623|gb|ADL43825.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
 gi|315407677|gb|ADU05794.1| Type II secretion system F domain protein [Micromonospora sp. L5]
          Length = 299

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 50/154 (32%), Gaps = 3/154 (1%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  +  A+   +  + + ++ E R +      G     ++      +           + 
Sbjct: 128 GQGLQQAIIGTIATAPEEIQEEVRTLAARLQAGWLARSALLAFADEIADPVADQVVAALI 187

Query: 90  VQS-QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           +     G  L + L +++         + +V+A   + + +   +  +           +
Sbjct: 188 LHLTDRGERLGDVLGSIATAASAEVATRREVEAKRTQPRFAVRFLTGMTLATLAY-GLVN 246

Query: 149 PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             Y+        G +++ V  A  +  ++ +R M
Sbjct: 247 SDYIRP-YGTLTGQLVMAVLGAAFVGLLVWVRSM 279


>gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
 gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica
           DSM 5511]
          Length = 536

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 56/140 (40%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R        P+ LD +     AG+ +  AV  + G    P+ +E  RV      G  
Sbjct: 310 HRRRIDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVRGSELGPLGAELDRVWADVQWGAD 369

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  + +R+ R +  +  +   T+++      GNL+  L   +R     + ++ + +   +
Sbjct: 370 LQTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMV 429

Query: 125 EAKASAWIIGSLPFCVSTLV 144
           E     ++   +   +  ++
Sbjct: 430 EYTIVVYVSYLVFLFIIAVL 449



 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 28  RAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQH-LGLSLSESISRMVRYMPLQEVSFF 84
           R+G+     + V+     +      EF   +      G+ +  ++  M R  P  +   F
Sbjct: 23  RSGMAFPKVIRVVAAHEATYGEAAEEFDVAVRNMDTFGVDVVTALQTMGRRSPSPQFREF 82

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKN--MKAKVQALSMEAKASAWIIGSLPFCVST 142
           S  +    Q G +L + L    R  ++      +  +  LS  A+A   ++ + P  + T
Sbjct: 83  SENLVSVLQSGHSLLDFLERQYRDYQEEAESHQERTLGLLSTLAEAYVTVLVAGPLFLIT 142

Query: 143 LVYFT 147
           ++   
Sbjct: 143 ILVVI 147


>gi|309810893|ref|ZP_07704694.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308435199|gb|EFP59030.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 232

 Score = 57.0 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 7/170 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------SLSESISRMV 73
           +D +V  +RAG  V+ A+ + +                 Q L L       + +    + 
Sbjct: 51  VDALVTVLRAGSAVTPALIMALDGVGATSAGGSATSAGWQRLRLEAVRDGDVVQVWRDLG 110

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R          +    + ++ G  L++A+   +R +R R++ +A V   +  AKAS  ++
Sbjct: 111 RLWRSAAFEEVAAAWQLSARHGCPLADAMEGAARSVRARRSHRACVDGATAGAKASTSVL 170

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             LP     L        +    +   G + L    A M +G    R M 
Sbjct: 171 LGLPVLGVGLGMLLGVDMLGC-YSGFSGLVTLWPGIALMFVGARWSRRMT 219


>gi|167769282|ref|ZP_02441335.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM
           17241]
 gi|167668250|gb|EDS12380.1| hypothetical protein ANACOL_00605 [Anaerotruncus colihominis DSM
           17241]
          Length = 309

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSE 67
                 +   AL II  +      +  AV   +   + PVRS F   +    L    +  
Sbjct: 128 KKNIAAELETALSIITTAYLRNEDIQTAVEENIDYLNPPVRSVFVEFLTRIKLVDPDVDA 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  M   +       +   +       G L   L  +   L D + +  +++ L  E +
Sbjct: 188 ALQDMGTKIDNAVFREWVAALLTCRHDRG-LKTILTPIVAKLSDMRIVNGELENLVFEPR 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
                +  L      L+Y+ +  + +VL++ P G  LL   AA M I
Sbjct: 247 KEFITMQVLVIGNIPLLYWLNQDWYDVLMHTPLGQALLAAIAAVMFI 293


>gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 309

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 4/185 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
            + ++R  +  +        +   +R G+ +  A+      + D +  +   + +   LG
Sbjct: 98  QMAQERIGQL-EALSEWTQRLAGLLRLGMGLEQAMITSRQGAPDELAPQIVNLSDRLRLG 156

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQA 121
                ++      +           + +     G  L++AL +L+  +RD    K  ++A
Sbjct: 157 WRPDGALRAFAEELNDVTADKVVAALILSVNDRGPGLAQALEDLAGTVRDEVAKKRAIEA 216

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              + + +   +  +      +  F  P Y     +   G ++L       +  + +MR 
Sbjct: 217 DRAKPRTTVRWMTVI-TVGVVVAGFFVPSYTKP-YSTLLGQLVLAFLTVGFIGVLALMRQ 274

Query: 182 MINFD 186
           +  F 
Sbjct: 275 LGAFR 279


>gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M]
 gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M]
          Length = 346

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +++I +        +P+ L  +  SV +G+ +  A+ +        +    R+++     
Sbjct: 57  QYMIAREQKALESVYPSFLRDLAESVSSGISLIYALKLTANADYGALNKYLRKLVIWLSW 116

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQ-------LGGNLSEALANLSRILRDRKN 114
           G+   +++ R  +Y       +FS  I   ++        GG++ + L  L+  +     
Sbjct: 117 GIPFPKAMERFNKYF------YFSPAIRRANEILLEIYKSGGDIVKTLRLLAENIEKTSE 170

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAA 170
           M   +     + K+  ++I  +   +  +     P +  VL++   G  +        + 
Sbjct: 171 MYKDI---ISQVKSKVFVIYMIFLILVAIAVIIKPIFAEVLVSKIGGKGIDVSYFKFLSF 227

Query: 171 FMLIGIMVMRLMI 183
            M+I   +   ++
Sbjct: 228 LMVISFAISSSIM 240


>gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703]
          Length = 203

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +K+++ KRT   L   P  +DI    V++G+ + ++++    +       +     +V  
Sbjct: 46  VKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTR 105

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + E L  LS+ +R+ + +  
Sbjct: 106 RAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVT 164

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +   + AK +  I   L   +  +V   SP  + ++
Sbjct: 165 EEKISKLTAKLT--IPLFLFILIPFIVLVISPSVLELI 200


>gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112]
          Length = 267

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 116 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 175

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 176 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 235

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 236 GVMILTLLPALFIV 249


>gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 294

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288


>gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           642]
          Length = 294

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LAAVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLM 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG+M +
Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFMAI 288


>gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14]
          Length = 271

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 120 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 179

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 180 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 239

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 240 GVMILTLLPALFIV 253


>gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 272

 Score = 56.6 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P   D++   + AG    DA   +      PV     R      LG   SE+  R   
Sbjct: 130 QLPLVADLLAACLSAGAGPRDAAEAVGESLGGPVGDRLVRTAAEIRLGGEPSEAWGRFGE 189

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
              +   +  +  +      G   ++ ++ ++  +R  +   A  +A       +A + +
Sbjct: 190 ---IPGAARLARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITAPVGL 246

Query: 134 GSLPFCVSTLV 144
             LP  ++  V
Sbjct: 247 CFLPAFLAVGV 257


>gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786]
          Length = 261

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 110 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 169

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 170 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 229

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 230 GVMIVTLLPALFIV 243


>gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147]
          Length = 234

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 83  VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 142

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 143 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 202

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 203 GVMIVTLLPALFIV 216


>gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 383

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 26/194 (13%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KR    L         +   + AGLP+  A+     Q+ +PV   F  ++      +S  
Sbjct: 37  KRKKIKLAQLTVFTQQLAAMLEAGLPLVSALEAQEEQTENPV---FSIIVRNVRNEVSAG 93

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            S S      P    + F +++    +  GNL+E L   S    D   +  +V+      
Sbjct: 94  RSFSDACSDYPNAFPNLFISMVE-AGEASGNLAEILDKTSVYFEDMVKLVRQVKGALT-- 150

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-----------------LGVAA 169
                +IG     V+ L+    P +  +      G  L                 +    
Sbjct: 151 -YPVAVIGLAVILVNVLLVAVIPVFAEMF--TSFGQDLPKPTQMLIDLSAFLKSYIIYII 207

Query: 170 AFMLIGIMVMRLMI 183
               +GI ++R  I
Sbjct: 208 IATGVGIWLLRKFI 221


>gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210]
          Length = 270

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 119 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 178

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 179 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 238

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 239 GVMILTLLPALFIV 252


>gi|215432631|ref|ZP_03430550.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
          Length = 167

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV- 81
           +V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L    
Sbjct: 1   MVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 60

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP    
Sbjct: 61  ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 120

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        ++ L+    G  LL V       G++    + +
Sbjct: 121 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 163


>gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF]
 gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 312

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  ++   
Sbjct: 158 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 217

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 218 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 276

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 277 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 310


>gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
 gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
          Length = 332

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV---GQSSDPVRSEFRRVIETQHLGLSLSES 68
              + P  +D++      GL +  ++ V+V         +  E          G +  +S
Sbjct: 180 ISAELPLLVDMLRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQS 239

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R+      +++     ++    + GG + E L      LR+ +    + Q   +  K 
Sbjct: 240 LQRLTNSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKM 299

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  +I +L   +  L+    PG M VL
Sbjct: 300 TGVMIVTLLPAL--LIVTAGPGVMTVL 324


>gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein
           [Burkholderia xenovorans LB400]
 gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein
           [Burkholderia xenovorans LB400]
          Length = 337

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           ++    KR    +D+ P  +D++      GL +  ++ V+V      +     E      
Sbjct: 174 LRRRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQR 233

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S++R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 234 QFTAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAML 293

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           + +   +  K +  +I +L   +  +
Sbjct: 294 RERIGRLAVKMTGVMIVTLLPALMIV 319


>gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4]
 gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
          Length = 268

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 117 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 176

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 177 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 236

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 237 GVMILTLLPALFIV 250


>gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9]
          Length = 266

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 115 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 174

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 175 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 234

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 235 GVMILTLLPALFIV 248


>gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 389

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58
             +   D+P+ +  +V  +RAG  +  A+  I            +       E  R  + 
Sbjct: 235 RKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHEKERSAYEEIVRTCKE 294

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G+  +E+  R      + +    S ++    + G  NL E L     +  D +   A
Sbjct: 295 MQSGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 354

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           KV+      K    ++  +   +  L+    P + + L
Sbjct: 355 KVRGEEASTKL---LLPMVLQLIVVLMILMIPAFFSFL 389


>gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49]
          Length = 211

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           ++     R     D+ P  +D++      GL +  ++ V+          + SE      
Sbjct: 49  VQRRASSRRQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQR 108

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+ R+      +++     ++    + GG + E L      LR+ +    
Sbjct: 109 QFVAGRTREQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSML 168

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +   +  K +  ++ +L   +  L+    PG++ V
Sbjct: 169 RERIGRLTVKMTGVMVLTLLPAL--LIVTAGPGFLAV 203


>gi|302205373|gb|ADL09715.1| type II secretion system membrane protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 251

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 6   KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           K+R      +  ++   AL  +   +RAG+  S A+  +     +  ++        +  
Sbjct: 67  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 126

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S S    +  R + +  +   +    +  + G  L+  L      L +      + Q
Sbjct: 127 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A    AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  +
Sbjct: 185 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 244

Query: 181 LMI 183
            ++
Sbjct: 245 AIM 247


>gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 264

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 113 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 172

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 173 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 232

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 233 GVMILTLLPALFIV 246


>gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola
           SANAE]
 gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella
           paludicola SANAE]
          Length = 678

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  K   + P+ L  +  +   G+ ++ ++A+I   +   + SE +++      G+ ++
Sbjct: 453 RRERKISAEMPDFLKKLASTNETGMTLTQSIALISNDNFGTISSEVKKINRNIQWGIDVN 512

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++      +         T+I+  S+  G++ + L   +        M  +++    + 
Sbjct: 513 TALKMFGNSLNTALSQRVITLITKASESSGDIRDVLNVAAND----AKMGERIRRERSDG 568

Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLI 156
                 I  + FCV    VY  S  ++ V+ 
Sbjct: 569 MLIYVAIIFITFCVFIYCVYTLSSSFIPVMY 599


>gi|283797116|ref|ZP_06346269.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291075533|gb|EFE12897.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 309

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 4/149 (2%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91
           +  AV   +   + PV   F+  +    L    +  ++  M   +  +    +   +S  
Sbjct: 152 IVTAVEENIAYLNPPVSKVFQNFLTQIKLVNPNVEAALRGMQGRIDNEVFREWCDALSDC 211

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
                +L   L  +   L D +N+ A+++ L  E +    I+         L+Y  +  +
Sbjct: 212 QHDR-SLKTTLTPIVAKLSDMRNVNAELEYLIAEPRKEFLIMVIFVIGNIPLMYMLNKDW 270

Query: 152 MNVLINDPRGHMLLGV--AAAFMLIGIMV 178
            +VL++ P G ++L V  A  F+  G +V
Sbjct: 271 YDVLMHTPLGQIILSVTAAVIFVSAGCVV 299


>gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 647

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R     D+FP  L+ +     AG+ + DA+ ++       ++SE RR+ +    G  LS
Sbjct: 432 RRIRSMEDEFPEFLNRLASINEAGILLIDAINMVAQTKIGVLQSEVRRMQKGLSWGQDLS 491

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
                    +     S   T++   S+   ++   L   ++    ++N++ +        
Sbjct: 492 SVFMEFESRVKTTMNSRIITLLVKASESTSDIIGVLHIAAKDAELQQNLRKERSTEMA-- 549

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                 I  + F V   + +    Y   
Sbjct: 550 --VYLFIVYISFAVFLFIIYVLTAYFIP 575



 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 11/176 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GL 63
           R +      P+ +  +    ++G + V DA   +   S        EF  ++      G+
Sbjct: 122 RQSYIDQSLPHGVAYMYALTKSGGVTVHDAFRSLSEHSHVYGLAADEFGYIVRDMDYFGM 181

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKV 119
            +  +I           +  F   I      GG+L+  L + +         ++    ++
Sbjct: 182 DVLSAIRNCSSTTSSTNLKAFLDGILFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEM 241

Query: 120 QALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             +  EA  + +++G +    +  +  F   G M +L      ++L+ V   F L+
Sbjct: 242 LGVLAEAYVAVFVVGPIFMIIILVVFGFMGSGSMPILYT--LIYLLIPVGTLFYLV 295


>gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98]
          Length = 273

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 122 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 181

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 182 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 241

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 242 GVMILTLLPALFIV 255


>gi|292490576|ref|YP_003526015.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
 gi|291579171|gb|ADE13628.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
          Length = 410

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A + ++      PVR    R+ E    G SL+E++            
Sbjct: 80  LATLLRAGLPLDRAFSTLIEIAEEGPVREILTRLQEQVRGGASLAEAMESQGE-----TF 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    + GG L   L  L+  +   K +K    A++      A ++G     V 
Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKN---AVTSALIYPAILVGVAGLSVI 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+ F  P     L  D  G  L       +  G ++
Sbjct: 192 ILLAFVVPQ-FQQLFED-AGKALPLATQIVIAAGDLL 226


>gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain
           protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 285

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           KRTA    + P  +  +   V +G+ + DA  +I   S   +    R   E    G S +
Sbjct: 138 KRTADCELELPEVVSTMAILVNSGMVLRDAWRMIGESSEGAIYKLMREAGENMQNGYSDA 197

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSME 125
           ++I    R     E+  F++ +    + GG  L   LA  S  L   K      + L + 
Sbjct: 198 DAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESSELWSSKRQ----KTLQLG 253

Query: 126 AKASAWIIGSLPFC 139
            KASA ++  +   
Sbjct: 254 EKASAKLLAPIMLV 267


>gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 678

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               +      L  +  +   G+ + +++ ++   SS  +  EF  +      G +L ++
Sbjct: 457 RHSIIGKLSENLRKLSSANETGMTLLESLNIVARTSSGRLADEFSIMHRKVQYGTNLKQA 516

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +        +  +S    +IS   +    + + L+  ++   ++ ++    ++ +   + 
Sbjct: 517 LREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDIDRDRKSRT---RM 573

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              II      +  ++      +   +
Sbjct: 574 QVVIIIMTFLTLLGVIAMLKVQFFETM 600


>gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91]
          Length = 272

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 121 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 180

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 181 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 240

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 241 GVMILTLLPALFIV 254


>gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 285

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +   D P  +  ++ ++  G      +  +   S   ++    R+     + + L
Sbjct: 134 KRRQEEITRDLPQLISKMMIALETGKSFLTTIQRLEETSGPRMKKMLARLNANIRI-MKL 192

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++++        +  +  F+  + +    G G   +   ++   LR  +    K    S 
Sbjct: 193 TDAVDLFAAETDVPVMRDFAAAVKIGVNSGYGEAKKYFDSIKGDLRKLRLAALKEVTRSQ 252

Query: 125 EAKASA-WIIGSLPFCVSTLVYFTS 148
             K    +I+ +L    + ++ F  
Sbjct: 253 PEKIKMLYILVALHAFAAVIIAFID 277


>gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894]
          Length = 269

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 118 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 177

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 178 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 237

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 238 GVMILTLLPALFIV 251


>gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
          Length = 274

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 123 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 182

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 183 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 242

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 243 GVMILTLLPALFIV 256


>gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH]
          Length = 278

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 127 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 186

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 187 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 246

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 247 GVMILTLLPALFIV 260


>gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 262

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 5/177 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 70  HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++      +P         V++  +++   +   L      +   K ++A+  
Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             S+      +++  +   +   +   S    + L     G + L       LIG++
Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQIGGLALDPLTLMALIGLV 243


>gi|158320934|ref|YP_001513441.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
 gi|158141133|gb|ABW19445.1| hypothetical protein Clos_1905 [Alkaliphilus oremlandii OhILAs]
          Length = 281

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 4/151 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K R  K   +  N  D++    + G      +      + DP++     +     +  S
Sbjct: 127 AKDRKNKIRLELCNIQDVMYFQNKIGTSEDIILTYAAEIAKDPLKEPLEYLAAAPKIKKS 186

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + +S+  + +   + E+  F + I  Q Q  G+++E     S++++  K ++ K++    
Sbjct: 187 VEDSLENLRKVSDVVELQSF-SFILQQRQETGSVAENHKAQSQMMKRNKRLRRKIKR--- 242

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + K +  I+ SL      ++  T P +   L
Sbjct: 243 QYKRTKLIVASLMLFTCYILLLTVPLFAEAL 273


>gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264]
          Length = 253

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 102 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 161

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 162 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 221

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 222 GVMILTLLPALFIV 235


>gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
 gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 29  AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            G+ +  ++ V+  + S     +  E +   +    G +  +S+ R       +++S  +
Sbjct: 180 VGMSIDQSLHVVENEFSTSLPVLGKELQIAAQQYQNGRTREQSLRRFSSLFENEDMSAVA 239

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            +I    + GG + + L   S  LR+++ +  K +   +  K +  ++
Sbjct: 240 RLIVQVDRYGGAVQQPLQQFSDRLREQRKLDMKEKVGKLTVKMTGVMV 287


>gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071]
 gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071]
          Length = 294

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   + +           LD++  S+  G  + +A+      S        R  ++   
Sbjct: 140 IRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLAAAEVSDGWASRRIRDALQDAR 199

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +   ++ R+   + ++E+   S+ +++ +  G  + E+LA+ +  +R R+  + + 
Sbjct: 200 ITGHTQWYALGRLGEELGIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIE- 258

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              S   K+ + +I  L  C   LV+   P  M V 
Sbjct: 259 --GSAGEKSQSMLIAQLLLCAGFLVFLIFPAAMRVF 292


>gi|302329927|gb|ADL20121.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275611|gb|ADO25510.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 266

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 6   KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           K+R      +  ++   AL  +   +RAG+  S A+  +     +  ++        +  
Sbjct: 82  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 141

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S S    +  R + +  +   +    +  + G  L+  L      L +      + Q
Sbjct: 142 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 199

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A    AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  +
Sbjct: 200 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 259

Query: 181 LMI 183
            ++
Sbjct: 260 AIM 262


>gi|218516408|ref|ZP_03513248.1| pilus component protein [Rhizobium etli 8C-3]
          Length = 121

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 42  GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA 101
           G+ S P+  E                ++  +     ++ V   +  +    + G  +++A
Sbjct: 7   GEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQA 66

Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASA-WIIGSLPFCVSTLV 144
           L  L++  RD +  +A+ +A ++  K +   I+  LP  ++ ++
Sbjct: 67  LRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVIL 110


>gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 303

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 62/177 (35%), Gaps = 4/177 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQ 59
           + ++   R  KF   F      +   +R    +   +   +  ++   ++ E   +++  
Sbjct: 114 LDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMNEETDSKLKMELEMIVQEV 173

Query: 60  HLGLSLSESISRMVRYMPLQEVS-FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G +L +++ +         V   +   I   +  G +LS+   N +R + D+ +    
Sbjct: 174 QSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCMNAARKINDKLSRARL 233

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           ++  +   K+    I  +       + F  P           G  ++ +    ++IG
Sbjct: 234 IKKKTARLKSVMLAIIGIITLTLVFILFFFPEAKECYSTT--GGKIILMFVLSIVIG 288


>gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
 gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
          Length = 262

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 5/177 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 70  HLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVV 129

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++      +P         V++  +++   +   L      +   K ++A+  
Sbjct: 130 MGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSL 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
             S+      +++  +   +   +   S    + L     G + L      +LIG++
Sbjct: 190 VRSLSLMFEVFVVAVMLLPIMVYIVALS---FSPLGALQVGGLALDPLTLMVLIGLV 243


>gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 311

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 30  GLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           G+ +   + VI          +  E +   +    G +   S  RM        ++  ++
Sbjct: 177 GMSLDQTLQVIGSDFGNVMPVLSREIKLANQQYSRGSTRERSFGRMSEVYQNDNLANLTS 236

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           ++    + GG + E L      LR+++  K K     +  K +A ++ +L   +  ++  
Sbjct: 237 LMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPAL--IIIT 294

Query: 147 TSPGYMNVL 155
             PG++ V+
Sbjct: 295 AGPGFLAVI 303


>gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_00218 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685089|gb|ADK28011.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 256

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 6   KKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           K+R      +  ++   AL  +   +RAG+  S A+  +     +  ++        +  
Sbjct: 72  KRRLEASQRREQEEISTALGSLAGDLRAGVEASVALENVAQNLPESALKDTLMAASRSSR 131

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S S    +  R + +  +   +    +  + G  L+  L      L +      + Q
Sbjct: 132 IGGSASAYWQQ--RALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQ 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A    AKA+A+I+ +LPF    L        +  L +   G +LL +    + +G +  +
Sbjct: 190 AALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQ 249

Query: 181 LMI 183
            ++
Sbjct: 250 AIM 252


>gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 286

 Score = 55.9 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           M+  + KRT     + P  +  +   V +G+ + DA  ++ G+    + +  R   E   
Sbjct: 133 MRQKLVKRTENCETELPEVVSTMAILVNSGMILRDAWNMVGGRGEGDIYALMRDASEDIR 192

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAKV 119
            G + SE+I++  R     E+  F++ +      G G L   LA  S  L + K  +   
Sbjct: 193 NGHADSEAIAKFGRATNSPEIIKFTSALMQSMGKGAGELPLFLARQSSDLWNEKKQRLLQ 252

Query: 120 QALSMEAKA 128
           +     AK 
Sbjct: 253 KGEQASAKL 261


>gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 236

 Score = 55.9 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D P  + ++   +RAG  V   +  +   +   +  E   V E   LG + +E+     R
Sbjct: 95  DLPVVIGLLASGIRAGATVPACLTAVSRATRGRLGEELAAVAEQLRLGAAPAEA----WR 150

Query: 75  YMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              L E +      ++  +  G  +++ L   +  LR     +   +      +    ++
Sbjct: 151 RPALPEPLVPVGRDLARAADTGAPVADLLDRHAVDLRRTLRARGTARLE----RLGVLVV 206

Query: 134 GSLPFCVSTLVYFT 147
             L  C        
Sbjct: 207 APLGLCFLPAFVLI 220


>gi|294813377|ref|ZP_06772020.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326441910|ref|ZP_08216644.1| type II secretion system F protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325976|gb|EFG07619.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 1/162 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG+    A+    G +   + +    V      G  +  ++    R      ++
Sbjct: 124 VAAELRAGIQPGPALLSAAGATDA-LGTAGAPVGAAARFGGDVPRALREAAREPGADGLA 182

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+ AL  L   LR  ++ + +++A    A+A+  ++  LP     
Sbjct: 183 GVAACWRVAVDGGAGLAAALDRLEEALRADRDQREELRAQLAGARATVGLLALLPVVALA 242

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +      + VL++ P G + L +  A    G+     ++ 
Sbjct: 243 MGWALGADPLRVLLHTPAGLLCLLLGGALEAAGLWWAARIVR 284


>gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264]
 gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 373

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 222 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSL 281

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 282 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 341

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 342 GVMILTLLPALFIV 355


>gi|318060836|ref|ZP_07979559.1| type II secretion system F protein [Streptomyces sp. SA3_actG]
          Length = 305

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG   ++A+A  V      +      ++     G  +  ++ +  R    + +
Sbjct: 134 LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 192

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP    
Sbjct: 193 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 252

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        + VL     G + L + +     G+     ++ 
Sbjct: 253 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 295


>gi|313835752|gb|EFS73466.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314970122|gb|EFT14220.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
          Length = 256

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 4   LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
             +++ A+ L    +   A  ++   V  G   S A+  + G                Q 
Sbjct: 70  RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 124

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+S+++    +   +  +   +    + +  G  L+ A  +++     R  ++A + 
Sbjct: 125 VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +    A+AS  I+G LP     + +         L     G   L  +      G++ 
Sbjct: 185 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 242


>gi|300115459|ref|YP_003762034.1| type II secretion system F domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299541396|gb|ADJ29713.1| Type II secretion system F domain protein [Nitrosococcus watsonii
           C-113]
          Length = 410

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A ++++      PVR    ++ E    G SL+E++         +  
Sbjct: 80  LATLLRAGLPLDRAFSILMEIAEEGPVRQLLSQLQEQVRGGSSLAEAME-----TQTETF 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    + GG L   L  L+  +   K ++    A++      A ++G     V 
Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALRN---AVTSALIYPAILVGVAGLSVI 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+ F  P     L  D  G  L       +  G ++
Sbjct: 192 ILLTFVVPQ-FQQLFED-AGKALPVATQIVIAAGNLL 226


>gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3
           [Achromobacter xylosoxidans A8]
 gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3
           [Achromobacter xylosoxidans A8]
          Length = 331

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 29  AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            GL +  ++ V+V +       +  E R   E    G +  +S++R+       ++S   
Sbjct: 195 VGLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDNDDLSAIC 254

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +I+   Q GG + E L      LRD++ ++ K +      K +  +I +L   +  +
Sbjct: 255 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLPALLIV 312


>gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS]
          Length = 328

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + ++R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|312138011|ref|YP_004005347.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311887350|emb|CBH46661.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 231

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 1/165 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L+ ++  +  G   + A  V   +      +  R       LG S +  +  +   +   
Sbjct: 64  LEAVIGELGVGAHPAAACDVAAQECRGDASAALRTAAGRARLGGSAAGGLV-LPGSVVAD 122

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+S  +   SV    G  L+E L      L+ R   +A+  A    A+A+A ++  LP  
Sbjct: 123 ELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGLPVL 182

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        + VL     G  LL        +G+     +++
Sbjct: 183 GIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVD 227


>gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
 gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
          Length = 311

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +   +K+R     ++ P  +D++      G  +  ++  +  +  D +     E +    
Sbjct: 147 LSAWVKRRRRAVENELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPILGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       ++S    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSDVYGDDDLSSLVQLILQVHAHGGAVQEPLRQFSIRLREQRRNSL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           K +   +  K +  ++ +L   +  ++                G  L+ +AA    +G
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL---------------AGPALVALAATMSSMG 309


>gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 308

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KR           LD++  S+  G  + +A+      S        R  +    +
Sbjct: 156 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 214

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + +  
Sbjct: 215 TGISQWQALGQLGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 272

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 273 -GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 306


>gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1]
          Length = 268

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 3/130 (2%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P A D++   + AG     A   +      P+     +      LG   S +  RM 
Sbjct: 125 RQLPLAADLLTACLEAGAGPYKAAEAVGRSLGGPIGERLAQAAAELRLGGEPSAAWGRMG 184

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L      +  +      G    E+++ L+   R  +  +A  +       A+A + 
Sbjct: 185 A---LPGAHGLARALERAGTTGAPAVESMSRLAADCRAEQGRQADKRVERATVLATAPLG 241

Query: 134 GSLPFCVSTL 143
                    +
Sbjct: 242 ACYLPAFLLI 251


>gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
 gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
          Length = 434

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 3/150 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +KR  + +  +P+ +D++   + AGL V  A + ++    S  +  E    +     G+ 
Sbjct: 287 QKRNQELMQAYPSFVDLLSLYMGAGLTVKGALLKIVTMTDSRILSEEINYTLNEIRSGIP 346

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            +E   R+   + L       T++S   + G    + L  L+        +K ++     
Sbjct: 347 ETEGYYRLGNRLELPVYLKMMTLLSQNIRKGTR--DILNMLAEEELSALQLKRELAKKKG 404

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           E   +  +   +      ++   +P  M  
Sbjct: 405 EEAGTRLLFPMILQLGVVMIIVIAPALMGF 434


>gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
           13280]
 gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
           13280]
          Length = 222

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYM 76
              DI+   + AGL    ++++     S  +     + +    +G+ S  E++ R+ +  
Sbjct: 84  EMTDIVRLGLSAGLSFDASLSLYCEGRSGELAQLMEKALFCWQVGVTSRDEALDRVAQDA 143

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            ++ +  F+  +S   +LG  L+E L    R +R       + +      K    I    
Sbjct: 144 GVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVEREIERAPVKL--LIPTGT 201

Query: 137 PFCVSTLVYFTSP 149
               + L+    P
Sbjct: 202 LILPALLLSIVGP 214


>gi|314928425|gb|EFS92256.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
          Length = 251

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 4   LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
             +++ A+ L    +   A  ++   V  G   S A+  + G                Q 
Sbjct: 65  RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 119

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+S+++    +   +  +   +    + +  G  L+ A  +++     R  ++A + 
Sbjct: 120 VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 179

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +    A+AS  I+G LP     + +         L     G   L  +      G++ 
Sbjct: 180 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 237


>gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1]
 gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1]
          Length = 662

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 1/140 (0%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P  L  +     +GL +S+++ ++       +  E +++ E    G S S 
Sbjct: 444 RMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGILSKELKKLKEDLSWGTSTSR 503

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ ++   +     S     +   ++   +L   L+  +  ++  + +K + ++  M   
Sbjct: 504 ALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEERLKKE-RSSEMVVY 562

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
                +    F     V   
Sbjct: 563 VVTIYVSFFVFLFIVYVLAM 582



 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLS 64
           R A        A+  +    + G+ + D    +   +        E   ++     LG  
Sbjct: 128 RKACIDKSMLPAVTYMYALTKGGMSIYDVFRSLSRHTHIFGTSAEEISYIVRDMDYLGKD 187

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              ++       P +    F   + +     G ++  + N S   +D   M  +    ++
Sbjct: 188 FITALKEAKERTPSERFKDFVDGLIL-VSSSGTITGYIKNKSEQYQDMAEMANRNLLKTL 246

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  A  ++   +   +  +       +   
Sbjct: 247 DVLAEVYVTVLVAGPLFIMTTLIVLQFFRP 276


>gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 279

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 52/138 (37%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            +KF    P  +D +++ +   +PV   ++ I    S  V    + + +    G SL  +
Sbjct: 127 KSKFESQLPAVIDSMIQGLAIEMPVEQVISYIADTKSGVVTPFLKELRDMLFTGSSLESA 186

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++ +       +    + ++S +S+    +   L  +   +  R   +   +A +ME   
Sbjct: 187 LTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKANNMENTM 246

Query: 129 SAWIIGSLPFCVSTLVYF 146
              I+         ++ +
Sbjct: 247 ILPIMAGYVLPYLVIILY 264


>gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z]
 gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z]
          Length = 601

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + ++   K     P  L  I      G+ +  A+++I G  +  + SE + V +    G 
Sbjct: 392 IRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMISGNKTGVLSSEIKIVTKELSYGA 451

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS ++ RM   + L  V    +++   S++   + E L      L     MK+K     
Sbjct: 452 HLSNALVRMEERIGLVSVKRAISLLVKASEVTDYVREILTIAISDLEHYVKMKSK----- 506

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              + +   +      +S  +Y  S   MNV  
Sbjct: 507 ---RLNVSFVYLAVIYLSFGIYLYSAYQMNVAF 536



 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64
           R  K   D P A+  +  ++ + + + +    +         V  E   ++    L G  
Sbjct: 100 RKNKIEQDLPFAITYMQ-ALSSTITLYEIFRSVYEAADLYGEVSRECGLIVRDVELFGED 158

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAKVQAL 122
           L  +I   ++  P +        +++  + GGN+     + S   R+  R+ + A +Q L
Sbjct: 159 LLTAIENTIKITPSENFRELLNDLALVYRSGGNMRNFFNSKSESYREIARQQLDALLQFL 218

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTS 148
            M A+       + P  +  ++   +
Sbjct: 219 EMIAEVYVTAFVAGPIAIMIMLVAQN 244


>gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 294

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 66/153 (43%), Gaps = 5/153 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHL 61
            K+R  + + +    + ++     +G+ V  A+ V+     +    +  E R V+     
Sbjct: 138 AKRRQKQVVLEISTFIPLLRILFESGMAVEQALRVLSSEGKELLPVLSDEIRVVLTRVDS 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + +   
Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + AK S  ++  L    + L+    PG++ +
Sbjct: 258 SKLSAKMSMVMMAFL--FPALLIVLAGPGFIAI 288


>gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
 gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
          Length = 312

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R      D    L+++   +R+GL      A+        +            
Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215

Query: 61  LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LGL+   +++  +         +     +    + G +L+E L + +   R     + + 
Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275

Query: 120 QALSMEAKA 128
           +      K 
Sbjct: 276 RVAKAPVKM 284


>gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 273

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++++ K+    L   P  +DI    V++G+ +  +++    +    +  +     ++ +
Sbjct: 113 IRNIVSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITK 172

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +Y    E+  F + +      G  + + L  LS+ +R+ + +  
Sbjct: 173 RAEIN-GLENAIKEFQQYSTETEIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVT 231

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYF-TSPGYMNVL 155
           + +   + +K +   +    F +   V    SP  + +L
Sbjct: 232 EEKNSKLSSKLT---LPLFVFILIPFVALVISPSVLELL 267


>gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 603

 Score = 55.5 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             KF    P  L  I      G+ +  A+ +I       + SE +   E   +G S+S +
Sbjct: 397 LKKFESQLPGFLREISDMKDMGMTLQSAIHIIAQSKIGVLTSEVKIASEEIKMGTSVSSA 456

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           + ++   + L  V    +++   S++  +L E LA     L     MK +
Sbjct: 457 LYKLEERIGLVSVKRAISLVIKASEITDHLREILAIAISDLEHYLRMKNE 506



 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHL-GLS 64
           R  +   D P A+  +  ++   + +      +         V  E   +I      G  
Sbjct: 100 RKTRIELDLPYAVTYMQ-ALSTTMTLFSIFKSVSDNEDLYGEVSKECGMIIRDVEYFGDD 158

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  +    P    S     +++  + GG++++  A+ S   R+    + +    +M
Sbjct: 159 LLTAMRNVQESTPSPTFSELLNDLAMVFKTGGSMTDFFASKSAHYRETAMQELENTLKTM 218

Query: 125 EAKASAWIIGSL--PFCVSTLVYFTS 148
           E  A  ++   +  P  +  +V   +
Sbjct: 219 EIMAEIYVTAFVAGPIAIMIMVVAQN 244


>gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25]
 gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 298

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 5/153 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
            K R      +    + ++     +G+ V  ++ V+  ++      +  E R ++     
Sbjct: 141 AKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHLTHELRLILARVDS 200

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L E + + V  + + E +    ++    Q GG   ++L  L ++L DR+  + +   
Sbjct: 201 GLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQLLDDRRLTRLQEYI 260

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             M AK S  ++  L    + L+    P ++ +
Sbjct: 261 SKMSAKMSVVMMVFL--FPALLIVLGGPAFIGI 291


>gi|328906757|gb|EGG26529.1| hypothetical protein PA08_1683 [Propionibacterium sp. P08]
          Length = 205

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 8/178 (4%)

Query: 4   LIKKRTAKFL---DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
             +++ A+ L    +   A  ++   V  G   S A+  + G                Q 
Sbjct: 19  RRQRQRAQILKGGREVARATRVLAGRVSVGEIPSVALEHVAGDV-----EVLALARRAQT 73

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S+S+++    +   +  +   +    + +  G  L+ A  +++     R  ++A + 
Sbjct: 74  VGGSVSDALIVTSQQPGMAGLVPLAHAWHLAATTGAPLAPAARSVAEGTARRARLEATLD 133

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +    A+AS  I+G LP     + +         L     G   L  +      G++ 
Sbjct: 134 SELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRACLLGSTLLACAGVLW 191


>gi|325675226|ref|ZP_08154911.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
 gi|325553932|gb|EGD23609.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
          Length = 224

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 1/165 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L+ ++  +  G   + A  V   +         R       LG S +  +  +   +   
Sbjct: 57  LEAVIGELGVGAHPAAACDVAAQECRGDASVALRTAAGRARLGGSAAGGLV-LPGSVVAD 115

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+S  +   SV    G  L+E L      L+ R   +A+  A    A+A+A ++  LP  
Sbjct: 116 ELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGLPVL 175

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        + VL     G  LL        +G+     +++
Sbjct: 176 GIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVD 220


>gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344]
 gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei
           1710b]
 gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC
           10229]
 gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
 gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
 gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
 gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1]
 gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
 gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
 gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU]
 gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e]
 gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
 gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
 gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
          Length = 336

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 185 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 244

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 245 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 304

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 305 GVMILTLLPALFIV 318


>gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4]
 gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4]
          Length = 231

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +RAG+PV  A+A +   +     +          LG   + + + +       
Sbjct: 94  LDLLAACLRAGMPVPTALAAVAPGAPPDTENALHATANLLALGSDAAPAWAPLRARPGFA 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+   +   +  ++ G  L+    +L+R +RD   ++A+ +A        A +  ++P  
Sbjct: 154 EL---AVAATRTARSGAALASTADDLARRVRDGLGVEAEERAER------AGVALAMPVG 204

Query: 140 VSTLVYFTSPGYMNVLIN 157
           +  L  F + G + V++ 
Sbjct: 205 LCFLPAFFALGVLPVVLG 222


>gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20]
 gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20]
          Length = 339

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 188 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 247

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 248 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 307

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 308 GVMILTLLPALFIV 321


>gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
 gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
          Length = 644

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++        P  LD +    + GL ++ A++++V  +   +  E +R+      G + S
Sbjct: 424 RKLGGIESSIPEFLDRMAGINQVGLTMAQAISIMVNANLGVLGYEIKRIKRDMEWGANFS 483

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R  R +    ++    +I+  S++ G ++E L   +   R   ++  K +   M  
Sbjct: 484 EALMRFERRITTPIIARMVVLITKASEMSGQINEVLNIAASDAR-MSDVLKKERLGEMFI 542

Query: 127 KASAWIIGSLPFCVSTLVY 145
             +   +  + F     V 
Sbjct: 543 YTAIVYLSFMVFIFVVGVL 561



 Score = 35.4 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 23/168 (13%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64
           R+ K      NA+  +    + G  +      I   S+    V  EFR+++      GL 
Sbjct: 127 RSTKINLTLHNAVAYMYAMRKGGGELMVIFRSISDHSNIYGEVALEFRQIVRDADFFGLD 186

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              +I R+    P  ++  F   +    + GG+++  L+    + ++    + K      
Sbjct: 187 EVSAIRRLNLTTPSTKLKDFLQDLLSVIESGGDMATFLSTRVHLFQEEARFEQKQ----- 241

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                              +   +  Y+ + +  P   +++ V    M
Sbjct: 242 ---------------FLGFLSLVAESYVTLFVAGPLFLIIIMVVMGMM 274


>gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC
           43553]
          Length = 330

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 29  AGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            GL +  ++ V++ + +     +  E R   E    G +  +S++R+       ++S   
Sbjct: 194 VGLSIDQSMQVLIKEFAQVLPVLSYELRLASEGYVRGRTREQSLARLATGFDNDDLSAIC 253

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +I+   Q GG + E L      LRD++ ++ K +      K +  +I +L   +  +
Sbjct: 254 RLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVAKTTVKMTGVMIVTLLPALLIV 311


>gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 300

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D  P  L+ I  + R GL +  AV V       P+  + R        G  L + +  + 
Sbjct: 157 DGLPGWLEDIALAARGGLNLRQAVEVANDVGEGPLIDDAREAFARVRAGQPLRQPLLELA 216

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           R  P  EV+     +      G  L++ L    R++R
Sbjct: 217 RLYPDPEVTVALRTLVEAETRGLPLAQTLEEQVRLMR 253


>gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 338

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 187 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 246

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 247 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 306

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 307 GVMILTLLPALFIV 320


>gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic
           archaeon RC-I]
 gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured
           methanogenic archaeon RC-I]
          Length = 652

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 3/157 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  K+  K     P  L  +     +GL ++ A+  ++  +   + SE R++      G 
Sbjct: 425 LRSKKVRKMDAAVPEFLKRLASFNESGLTLTMAIKALLNSNMGVLNSEIRKIWTDIEWGA 484

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              E++ R    +    +    T+I+  S+  G++ E L  ++         + + + L+
Sbjct: 485 DAKEALIRFEYRVNTASIRRVVTLITKASESTGDIKETL-FIAAADAAAIQSEREERFLN 543

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           M    S   I    F    ++Y  S  ++ V+   P 
Sbjct: 544 MLLYLSIIYISF--FVFLYILYTLSTVFLPVVPATPI 578



 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64
           R +      P+A+  +      G+ + D    I    +    V  EF+ V++   L G+ 
Sbjct: 134 RQSAIDQMLPHAVTFMHAMRSGGMSLLDIFRAINEHREIYGEVTLEFQAVVQGVELLGMD 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQ 120
           L  S+       P   +  F    +   + GG+L + L   +   +           ++ 
Sbjct: 194 LITSLRHAATITPSDHLKNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLELL 253

Query: 121 ALSMEAKASAWIIGSL----PFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI 174
           ++  E   +A++ G L          +V   + G +++L  I  P G ++       M +
Sbjct: 254 SMLAEVYVTAFVAGPLFLITILVSMGMVSSGNTGQIDLLVYIAIPLGSVMFIWLLIAMGL 313


>gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411]
 gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411]
          Length = 374

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + +  +R  K L +  + +D I R V AG    +AV       +   +R E         
Sbjct: 24  RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHELGVACVKVR 83

Query: 61  LGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           LG +     +               F     +  + G  L+         +  +    +K
Sbjct: 84  LGAAPGAGAAGAAPGSDAPSFLAHLFHI-WGISRRHGVGLATLARAHVTDIDAQLAHISK 142

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + +  A+ +  ++ +LP   + L   +  G +  L+ +  G +L  V    +  G + 
Sbjct: 143 STSATAGARLTVTVLLALPVGAAALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202


>gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
 gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
          Length = 341

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 190 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 249

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 250 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 309

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 310 GVMILTLLPALFIV 323


>gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305]
 gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668]
 gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305]
          Length = 340

 Score = 55.1 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 309 GVMILTLLPALFIV 322


>gi|314932288|gb|EFS96119.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
          Length = 288

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576]
 gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576]
          Length = 336

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 185 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 244

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 245 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 304

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 305 GVMILTLLPALFIV 318


>gi|222530411|ref|YP_002574293.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457258|gb|ACM61520.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 303

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 63/183 (34%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++   +  +F   F      +   ++    +   +     +  D  +R E   ++   
Sbjct: 114 LDYMSTSKRFRFEQRFGEFTQNVAIMLKGTPNLMAVLFQAKEEEQDLRLRKEIETILSEV 173

Query: 60  HLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G +L +++            VS +   +   +  G ++S+   N SR + D+ +    
Sbjct: 174 QSGTTLEQALKNFKERNNFSNIVSTWVDSVIFANLSGASISDVCMNASRKINDKLSRARL 233

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   K+    I S+      +V F  P       +   G ++L    + ++     
Sbjct: 234 IRKKTARLKSVMIAIVSIILITLGMVLFLFPEAKES-YSTAGGKIILAFVLSLVIASTYY 292

Query: 179 MRL 181
           M  
Sbjct: 293 MLK 295


>gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655]
 gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655]
          Length = 340

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 309 GVMILTLLPALFIV 322


>gi|313819747|gb|EFS57461.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
          Length = 288

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50]
 gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 328

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + ++R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2]
 gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 292

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R AK + DFP+ + I    + A +P + AV+  V    D  +   +R +    L  SL+E
Sbjct: 144 RKAKLIADFPDFIRITEGYLTANVPFAKAVSECVKYVGDEWKPILQRFVVDCEL-KSLNE 202

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++  + R + + E+  F  ++ +  + GG+  +     +  +R+   ++  + A+ +  +
Sbjct: 203 ALDGLKRDVDMFEIREFVALVKLTLEQGGDAKDGFTAQADKIRE---LQMDMIAIKIGKR 259

Query: 128 ASAWIIGSLPFCVSTLVYFTSPG 150
            +  II   P  +  L+ F  P 
Sbjct: 260 QTMGIILQGPLLLCNLMVFGLPT 282


>gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 340

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 309 GVMILTLLPALFIV 322


>gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13]
 gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13]
          Length = 340

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESI 69
           +D+ P  +D++      GL +  ++ V+       +    SE          G +  +S+
Sbjct: 189 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 248

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R+      +++     ++    + GG + E L      LR+ +    + +   +  K +
Sbjct: 249 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 308

Query: 130 AWIIGSLPFCVSTL 143
             +I +L   +  +
Sbjct: 309 GVMILTLLPALFIV 322


>gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 294

 Score = 55.1 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHL 61
            ++R  K + +    + ++     +G+ V  A+ V+  +  D +     E R V+     
Sbjct: 138 AQRRQKKVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDS 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + +   
Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + AK S  ++  L    + L+    PG++ +
Sbjct: 258 SKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288


>gi|313773054|gb|EFS39020.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313831097|gb|EFS68811.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|314980646|gb|EFT24740.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|315090039|gb|EFT62015.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315096612|gb|EFT68588.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327330162|gb|EGE71912.1| membrane spanning protein [Propionibacterium acnes HL096PA3]
 gi|327333258|gb|EGE74979.1| membrane spanning protein [Propionibacterium acnes HL097PA1]
 gi|327443397|gb|EGE90051.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327447489|gb|EGE94143.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
          Length = 288

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|77166345|ref|YP_344870.1| general secretion pathway protein F [Nitrosococcus oceani ATCC
           19707]
 gi|254435718|ref|ZP_05049225.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
 gi|76884659|gb|ABA59340.1| General secretion pathway protein F [Nitrosococcus oceani ATCC
           19707]
 gi|207088829|gb|EDZ66101.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
          Length = 410

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A ++++  + D PVR    ++ E    G SL+E++            
Sbjct: 80  LATLLRAGLPLDRAFSILMEIADDGPVRQLLSQLQEQVRGGSSLAEAMETQAE-----TF 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    + GG L   L  L+  +   K +K    A++      A ++G     V 
Sbjct: 135 SPLYISMIRAGEAGGALDVILGRLADFMERSKALKN---AVTSALIYPAILVGVAGLSVI 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+ F  P     L  D  G  L       +  G ++
Sbjct: 192 ILLTFVVPQ-FQQLFED-AGKALPVATQIVIAAGNLL 226


>gi|256826297|ref|YP_003150257.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
 gi|256689690|gb|ACV07492.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
          Length = 264

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 2/164 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD +  ++ AGLP + A+ ++    S P       V+     G  L  S  ++       
Sbjct: 93  LDGLAAALSAGLPPAAALRLVAD--SGPAVPWLEPVLGAGEQGGLLGASWKQVAAGHQSV 150

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            +   ++  ++  + G  L+ A+A  +  +R ++  +   Q+ +  A AS +++  LP  
Sbjct: 151 ALEQVASAWALSERSGAALAPAVAMAAETVRRQRESRQTAQSAASGAMASMYMLSLLPLV 210

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                         + +  P G +      A +++G +  R ++
Sbjct: 211 GLAGAGALGWSPQELYLQQPLGLVSALAGVALLVVGWLASRRLV 254


>gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 307

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +   +KR           LD++  S+  G  + +A+      S        R  +    +
Sbjct: 154 RDAAEKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWANQRIRNALSDARI 212

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S  +++  +   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + +  
Sbjct: 213 TGVSQWQALGALGEELGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELAEIE-- 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 271 -GSAGEKSQSMLVAQLLLCAGFLVFLIFPAAMRVF 304


>gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 304

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R   F       LD++  ++  G  V +A+               R  +    
Sbjct: 150 LRQEAAQRRRDFRHVVGAFLDLVAMNLAGGRGVPEALMTAAQVGDGWAMVRIREALANAR 209

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G +  +++ R+   + + E+   +  +++ +  G  + ++LA  +  +R R+  + + 
Sbjct: 210 IVGQTPWQALGRLGEEVNVAELRDLAAALTLVADDGAKIRQSLAARAASMRSRELSELE- 268

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                  ++ + +I  L FC   LV+   P  + +L+ 
Sbjct: 269 --GKAGERSQSMLIAQLLFCFGFLVFLGFPALIRILVT 304


>gi|158313207|ref|YP_001505715.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec]
 gi|158108612|gb|ABW10809.1| hypothetical protein Franean1_1361 [Frankia sp. EAN1pec]
          Length = 287

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 3/160 (1%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            + AG  +  A+          +    RR++    + LSL +++  M   +P   +    
Sbjct: 109 GLDAGQHLRAAIVASTDHPPAELAGPLRRLVARLDV-LSLPDALWAMRAEVPHPALGPMI 167

Query: 86  TVISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             + V  + G G+L   +A+     R    +     AL    + +  ++  L    ++++
Sbjct: 168 AALDVAYRRGAGDLPRLMASQVEATRQSVALLRDQHALRARHRRAMTLLLVLFTGSTSVL 227

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             T P ++        G ++L V    +++ +  +  M  
Sbjct: 228 LVTWPAFLAP-YRTMSGQLVLAVIGGGVVLAVRALAAMSR 266


>gi|314974320|gb|EFT18416.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
          Length = 288

 Score = 54.7 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
 gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
          Length = 407

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSEFRRVIETQ 59
            K R  +   D+P  +      + AG+P   A   I       +++  V  E    +   
Sbjct: 253 KKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQIASVYRQQENTRYVYEEMVYTMREM 312

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118
             G   SE          L     F+ ++S   + G   L+E L   +    + +   A+
Sbjct: 313 QRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRKGTKGLAELLQREAAGAFEERKAAAR 372

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                   +    +   L   +  +V    P ++ +
Sbjct: 373 KLGEETSTRLLGPMFLMLGVVLMIIVV---PAFLTI 405


>gi|307325197|ref|ZP_07604400.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306889001|gb|EFN19984.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 303

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 59/166 (35%), Gaps = 2/166 (1%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +++  ++ A   +  AV      +   +R E   ++ +   G  L  ++           
Sbjct: 117 EMLRDTLSAAAGLEQAVLATADIAPTALRRELSALVVSVRSGQPLPAALRTFADDADDPL 176

Query: 81  VSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
                  + + ++   + L+  L  L+  +R++  M+ ++ A     +    +  ++   
Sbjct: 177 ADVVVAALVMAAERQASQLAALLGELADSVREQVAMRQRIDAGRASIRTGVRVTVTVTLG 236

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           ++  +   +  Y++   N   G ++L V  A        +  +   
Sbjct: 237 MAVGLTVFNRPYLDP-FNTLTGQLVLAVVGALFAASFTWLSAIGRV 281


>gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
 gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
          Length = 268

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70
           +  P  +D++   ++AG+ +  A+             +   F ++++   + + L +SI 
Sbjct: 122 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 180

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +    P  E+  F + +      G  + E L  LS  ++  + + A+     +  K + 
Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   +   +  +V   SP  +  + +
Sbjct: 241 PLFLFM--VIPFIVLILSPSILGFIYH 265


>gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
 gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
          Length = 261

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 2/148 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60
           HL+  R + F ++F   L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 69  HLVSARRSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAEVEEDKYIARELALAAREMIV 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E+++     +P         V+   +++   +   L      L   K ++A+  
Sbjct: 129 MGASQEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQSL 188

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             S+      +++ ++   +   +   S
Sbjct: 189 IRSLSLMFEIFVVAAMLLPLMVYIVALS 216


>gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.]
          Length = 391

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P+    +   + +G+ + DA+  +  +          ++ E+   G SL +++      
Sbjct: 62  LPDITRNLSMLLASGVQLMDALQSLSDEYPGFYGDLLNQIRESVSSGTSLHKALESYGYV 121

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P  E       +    +  G+L   L  ++  L  + ++KAK+++ ++       + G 
Sbjct: 122 FP--EYY---INMVQAGETSGSLDMVLVKIADFLETQASIKAKIRSATV---YPLLMAGV 173

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
               +  L  F  P  + +          L V   
Sbjct: 174 STLILFFLFSFVMPKIVRIFTETGGSLPFLTVVIV 208


>gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A]
 gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A]
          Length = 662

 Score = 54.7 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  K  +  P+ L  +     +G+ +S+++ ++       +  E +++ E    G S S 
Sbjct: 444 RMRKIDERMPDLLRNLSSMNDSGILLSNSLKIMAESKMGILSKELKKLKEDLSWGNSTSR 503

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ ++   +     S     +   ++   ++   L+  +  ++  + +K +        +
Sbjct: 504 ALMKLENNIRTATSSRVLHTLIKANESTSDIKNVLSITAEQVKSEERLKEE--------R 555

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
           +S  ++  +   V+  V+  
Sbjct: 556 SSEMVVYVVTIYVAFFVFLF 575



 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 16/172 (9%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH-LGLSLSESISRM 72
            P A+  +    + G+ + D    +   +        E   ++     LG     ++   
Sbjct: 137 LP-AVTYMYALTKGGMSIYDVFRSLSSYTHIFGTSAEEISYIVRDMDYLGKDFITALKEA 195

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P +    F   + +    GG ++E + N S   ++  ++  +     ++  A  ++
Sbjct: 196 KERTPSERFKDFVDGLIL-VSSGGTITEYMKNKSEQYQEMADLANRNLLKRLDVLAEVYV 254

Query: 133 IGSL--PFCVS---TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +  P  +     ++ F  P    +L       ML+ V      +  +V+
Sbjct: 255 TAFVAGPLFIMTTLVVLQFLKPASAQILY------MLIYVIIPLATLLFIVL 300


>gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacterium efficiens YS-314]
 gi|259166372|gb|EEW50926.1| membrane protein [Corynebacterium efficiens YS-314]
          Length = 224

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 10/174 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSESI 69
               L + + ++RAG P++DA+   +  +      + P              G S +  +
Sbjct: 49  LAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVL 108

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                  P  ++    T+  V  + G  L   L  L   L  ++  +    A     +A+
Sbjct: 109 IDA----PTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQAT 164

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           A I+  LP     +        +  L     G +LL         G ++   ++
Sbjct: 165 AVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKIL 218


>gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 448

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 27/161 (16%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +FL DFP ALD+I   +R+G  +  A   +   +   + +E   V +    G ++  + 
Sbjct: 276 NRFLADFPLALDLIAACLRSGETIMSAARAVGAATGGVLGAELCSVGDALAAGATVGAAC 335

Query: 70  SRM----------------VRY----MPLQEVSFF---STVISVQSQLGGNLSEALANLS 106
            R+                 R      P +           +      G  L+  L  L+
Sbjct: 336 ERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATLTRLA 395

Query: 107 RILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
               DR   +A  ++++   +A    +  L  C        
Sbjct: 396 ----DRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLL 432



 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 4/171 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI----ETQHLGLSLSESISRMV 73
           + L      + AG P  +A+    G   + V +   R      +     L  +E    ++
Sbjct: 79  DLLAAFAAELDAGAPQLEALRRAAGGIDELVAAPAGRSAWLPIDQLGAALDRTEEPGALL 138

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                  +        V + +G  L+     L+ + R       ++ +     ++S  ++
Sbjct: 139 CRSEASSLRQLGVAYQVCAAVGARLAPVATMLAAVARADAVRAGELTSALAGPRSSGRLV 198

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            SLP     L        + VL+  P G   L V     L+G+  +R + +
Sbjct: 199 ASLPLAGIVLGSLAGAAPIAVLLGTPAGIGCLLVGGLADLVGVRWLRRLAD 249


>gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
 gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
          Length = 291

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           +++I  + ++F    P  ++ ++ S++ G+ + +A    +       V+ E+ +++    
Sbjct: 136 QNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALRGMDKTLVQREYAKMVAELK 195

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                + +    + R +  +E   F  +I    + G  +S+ L +    + D + +  K 
Sbjct: 196 IYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDNQIVALKK 255

Query: 120 QALSMEAKASA--WIIGSLPFCVSTLV 144
           +A S +   +A   ++  +P  +  ++
Sbjct: 256 KADSKKNLGTAINILLIFVPVILLLII 282


>gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 610

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH 60
            + + R +K   D P A+  +  ++   +   + V  I  +    + V  EF +V+    
Sbjct: 104 MIARGRKSKIDLDLPYAVSYMQ-ALSTTMSPFEVVKRIYEEKAMFNEVSLEFGQVVRDVE 162

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L G  L  ++  + +  P      F   + V  + GG+++  L+  +    ++   +  +
Sbjct: 163 LFGDDLITALHNLQKTTPSPLFRDFVNDLGVVYESGGDITAYLSAKTEFFHEQAKRELDL 222

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++E  A  ++   +   ++ ++   + G  +          +  V     +I I ++
Sbjct: 223 LLKTIEIMAEVYVSAFVAGPIALIIMIVAQGMTSAATMTWLVPFMYLVIPVGAIIMIWML 282

Query: 180 RLMI---NFDV 187
            LM+   N +V
Sbjct: 283 SLMLPPENLEV 293



 Score = 50.8 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P  L  +   +  GL + DA+  I       + SE   V      G  ++ ++ RM
Sbjct: 410 ENNIPEFLRELSDMIDIGLTLPDAIHRISNAKLGLLSSELAIVSRDVSTGAYVNSALVRM 469

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
              + +  V    +++   S++  NL +              ++++        +A+  I
Sbjct: 470 EERIGVISVKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE--------RANTAI 521

Query: 133 IGSLPFCVSTLVYF 146
           +  +   +S  +Y 
Sbjct: 522 VYVMIIYLSFGIYL 535


>gi|314977796|gb|EFT21890.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
          Length = 288

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain
           protein [Propionibacterium acnes HL103PA1]
          Length = 147

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P AL ++  ++ AGLP+  AV  +      P   + RR+  +   G+  S + + +  
Sbjct: 8   QLPEALLMLSSAMEAGLPLRSAVTTVAESLEGPCAEDLRRLASSLAAGVPDSRAWNDLAS 67

Query: 75  ----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
                 P Q+       +S     G  +SE L+  +  L+
Sbjct: 68  VEVWRDPAQD-------VSRAVNSGEGISELLSAHAAQLQ 100


>gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478]
          Length = 265

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A D++V  +R G+    A      ++   V +  R V     LG  ++  +  + R   L
Sbjct: 95  AFDVLVGELRVGIHPVQAFGTAADETDGAVAASMRAVAARARLGADVTGGLRAVARMSAL 154

Query: 79  QE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +      + +R+   A V +    A+A+A I+  LP
Sbjct: 155 PTHWERLAGYWQLASDHGLAIATLMRAAQSDIVERQRFSASVASGLAGARATANILSGLP 214

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+N   G  LL +  A +  G++    + +
Sbjct: 215 LLGVLLGQLIGARPVSFLLNGHAGGWLLVIGVALVCAGLLWSDRITD 261


>gi|171060103|ref|YP_001792452.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
 gi|170777548|gb|ACB35687.1| general secretion pathway protein F [Leptothrix cholodnii SP-6]
          Length = 405

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGLP+  A+  +  ++ DP + E    +    + G   + +++   R     E 
Sbjct: 75  LAGLVGAGLPLERALTALGDEAEDPKQGELLAHLRAEVNAGSPFARALASAPR-----EF 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  L +R+ +K K+   ++     A +       V 
Sbjct: 130 DDVYRAVVAAGEQSGQLGRVLDKLADDLEERQALKGKLIGATL---YPAIVSLVAIVIVV 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P    V     R    L +A  
Sbjct: 187 FLVTYVVPQVAQVFAGGKRALPFLTMAML 215


>gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
 gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
           27560]
          Length = 478

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 15/163 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------S 50
           +K  +KKR  +   D+P  L  I+    AGL +  ++  IV Q  D  +           
Sbjct: 315 LKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQYEDEKKKNPKEYHYAYE 374

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALAN-LSRI 108
           E +        G+S   +I++      L      + +I    + G G LS AL N L+R 
Sbjct: 375 ELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIRRGTGELSFALENELNRA 434

Query: 109 LRDRKNM---KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           L +RKN    +    +  +    +  +I +L   +   +   +
Sbjct: 435 LVERKNTALKRGSEISTKLLGPMTVMLIVALVILMVPALMSIN 477


>gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Corynebacterium efficiens YS-314]
 gi|23492135|dbj|BAC17109.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 281

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 10/174 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQHLGLSLSESI 69
               L + + ++RAG P++DA+   +  +      + P              G S +  +
Sbjct: 106 LAGFLGLCIGNLRAGAPMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVL 165

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                  P  ++    T+  V  + G  L   L  L   L  ++  +    A     +A+
Sbjct: 166 IDA----PTMDLQRLGTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQAT 221

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           A I+  LP     +        +  L     G +LL         G ++   ++
Sbjct: 222 AVILALLPLAGVLMGTAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKIL 275


>gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 294

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHL 61
            ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+     
Sbjct: 138 AQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDS 197

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + +   
Sbjct: 198 GLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYI 257

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + AK S  ++  L    + L+    PG++ +
Sbjct: 258 SKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288


>gi|327325750|gb|EGE67545.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
 gi|328760172|gb|EGF73747.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 288

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism
           HF4000_APKG7N23]
          Length = 255

 Score = 54.3 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K    +R  +  D +P+ L  +   +RAG+ V  A+  I  + +D +    R  +     
Sbjct: 39  KKRKLERIKELEDTWPDVLADLSEELRAGMGVESALDSIANRRNDRMGLMLRDAVSDMRD 98

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 ++           +S   ++++V     G+++  L N+S    +   ++ +  A
Sbjct: 99  N-GFGIAMKNFAAKSESAMISRIVSILNVALASSGSIATTLENISEEFWEIYMLRKERIA 157

Query: 122 LSMEAK----ASAWIIGSLPFCVSTLVY 145
            +            I+  L       ++
Sbjct: 158 KTQGTANFILWGGSILCPLMLGAIVAIF 185


>gi|327456790|gb|EGF03445.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
          Length = 288

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 271


>gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 302

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KR           LD++  S+  G  + +A+      S        R  +    +
Sbjct: 150 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 208

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + +  
Sbjct: 209 TGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 266

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 267 -GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 300


>gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
 gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
          Length = 193

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
             ++   + + D P A D++V  +RAG P++ A+ V V     P+      V     LG 
Sbjct: 41  RARRERDRVVADLPLAADLMVACLRAGQPITGAIDVTVEAVGGPLGERLAWVSGQLRLGA 100

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
           +   +   +    PL  +   + ++S  +  G  +++ L  LS  
Sbjct: 101 APESAWQALAAEPPLAPL---ARMMSRAALSGAPVADVLTRLSDD 142


>gi|284989266|ref|YP_003407820.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062511|gb|ADB73449.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 300

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 7/171 (4%)

Query: 18  NALDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            AL   VR     + AG  +   +      +  P+++E   +          S ++    
Sbjct: 106 EALQEWVRRTSDVLAAGGGLEQTLIRSAHTAPAPIQAEVATLAARLQARWPASRALLAFA 165

Query: 74  RYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             +           + + ++L G  L+  L  L+  L +   M+ KV+A   + +A+A  
Sbjct: 166 DDLDDAAGDLVVAALLLGAELRGPGLARVLTELAGSLTEEVTMRRKVEADRAKPRANARW 225

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  L    +  +   +  Y+        G M+L   AA ++  ++ MR + 
Sbjct: 226 L-LLITVAAAGLAALNGDYLTP-YGTALGQMVLAAIAALIVGCLLWMRRLT 274


>gi|315081086|gb|EFT53062.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 288

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 164 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 224 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVTVAVVMYVIALVQMY 271


>gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
 gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243]
 gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp.
           HGA1]
          Length = 312

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 1/129 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   ++R      D    L+++   +R+GL      A+        +            
Sbjct: 156 VKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDSDLARACVGAQHAWS 215

Query: 61  LGLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           LGL+   +++  +         +     +    + G +L+E L + +   R     + + 
Sbjct: 216 LGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSLAEGLESAAAEARAVHRAQVEE 275

Query: 120 QALSMEAKA 128
           +      K 
Sbjct: 276 RVAKAPVKM 284


>gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614]
 gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614]
          Length = 302

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  +  D   + LD++V S+  G   +DA+  +    +      F  + +   
Sbjct: 148 LRETAGKRREELCDALSDFLDLVVMSMEGGRSHADALPTVAQIGT---GWAFHTIYDAID 204

Query: 61  ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G++  E++  +     + E+      +++    G ++   L   ++ +RD +   
Sbjct: 205 NARPNGMTPWEALGEVGERFGVVELLDLRASLNLAQDEGTSIRNTLIARAQSMRDARLAD 264

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           A  +A          ++       + ++ 
Sbjct: 265 AHARANKSTDAMRNNLMVMALVAAAYVIL 293


>gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 306

 Score = 54.3 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           +    KR           LD++  S+  G  + +A+      S        R  +    +
Sbjct: 154 RDAADKRRD-LRRVIGAYLDLVSMSLAGGRGLPEALMAAAEVSDGWATHRIRNALADARI 212

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S  +++ ++   + ++E+   S  +++ +  G  + E+LA+ +  +R R+  + +  
Sbjct: 213 TGISQWQALGQLGEDLGVEELKDLSASLALVADDGAKVRESLASRAETMRHRELSEIE-- 270

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S   K+ + ++  L  C   LV+   P  M V 
Sbjct: 271 -GSAGEKSQSMLVAQLLLCAGFLVFLIYPAAMRVF 304


>gi|124268322|ref|YP_001022326.1| general secretory pathway protein F [Methylibium petroleiphilum
           PM1]
 gi|124261097|gb|ABM96091.1| general secretory pathway protein F [Methylibium petroleiphilum
           PM1]
          Length = 404

 Score = 54.3 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 14/163 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGLP+  A+  +  ++ DP + E    +    + G   + ++    R     E 
Sbjct: 74  LAGLVSAGLPLERALTALTDEAEDPRQRELLAHLRAEVNAGSPFARALGNAPR-----EF 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  L +R+ +++K+      A   A +       V 
Sbjct: 129 DDVYRAVVGAGEQTGQLGLVLEKLADDLEERQELRSKLIG---AALYPAIVSLVAIVIVV 185

Query: 142 TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179
            LV +  P   +V              +L ++A     G ++M
Sbjct: 186 FLVTYVVPQVASVFAGGKRALPFLTSAMLAISAFLRSWGWLLM 228


>gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833]
 gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833]
          Length = 260

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D P A+D++V  +RAG PV  AV V       P+      V     LG     + + +  
Sbjct: 119 DLPFAIDLLVACLRAGQPVDRAVEVTADAIGGPLAERMSWVAVQLRLGADPGTAWAGLAD 178

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
             P      F+  +   ++ G  +++ L  L
Sbjct: 179 EPPAAP---FARTMIRAAKGGAPVADVLVRL 206


>gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
           27755]
 gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
           27755]
          Length = 397

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 12/159 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRVI 56
            + R  +   D+P  +  +   + AG+ V  A   IV      ++         E +   
Sbjct: 240 KQARQKQMCLDYPEVISKLTLLLGAGMTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTC 299

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNM 115
                G+  +E   +  R    QE   F  ++S   + G   L++ L   +    + +  
Sbjct: 300 RQMDGGVPEAECYEKFGRRCGTQEYMRFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKA 359

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +A+        K    ++         LV    P +  V
Sbjct: 360 RARRLGEEAGTKL---LLPMFLMLAEVLVIVVVPAFFTV 395


>gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri]
          Length = 277

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSLSESIS 70
           +  P  +D++   ++AG+ +  A+             +   F ++++   + + L +SI 
Sbjct: 131 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 189

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
            +    P  E+  F + +      G  + E L  LS  ++  + + A+     +  K + 
Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            +   +   +  +V   SP  +  + +
Sbjct: 250 PLFLFM--VIPFIVLILSPSILGFIYH 274


>gi|318080885|ref|ZP_07988217.1| type II secretion system F protein [Streptomyces sp. SA3_actF]
          Length = 219

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG   ++A+A  V      +      ++     G  +  ++ +  R    + +
Sbjct: 48  LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 106

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP    
Sbjct: 107 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 166

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        + VL     G + L + +     G+     ++ 
Sbjct: 167 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 209


>gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822]
 gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis]
          Length = 328

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           ++ + ++R      + P  +D++      GL V  ++ V++         +  E +   E
Sbjct: 164 LRRIARRRECA-EAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAE 222

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +  +S+SR+ +     ++S    +I    + GG + + LA  +  +R+R+ ++ 
Sbjct: 223 QYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLEL 282

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTL 143
           K +   +  K +  ++ +L   +  +
Sbjct: 283 KARVARLTVKMTGVMVVTLLPALLII 308


>gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism
           HF4000_APKG7N23]
          Length = 191

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K R A    +   A+  I   + +G+ V++A+  I  +    +   FR++      G +
Sbjct: 1   MKSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIADEDYGDLSVIFRQIFADTDSGRN 60

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---- 120
            S+++   +R      +    + + +  +   N+ + L +++   R+ K  + ++     
Sbjct: 61  FSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAE--REAKERRMELDGFIE 118

Query: 121 --ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A + E   +  I+  L   ++ ++     G    +         + V  +F++ G+ +
Sbjct: 119 GLAGTAEFFIALSILLPLIVVIAAVISSIMEGA-GAIFGGGMTMPPICVPVSFLVTGLGL 177

Query: 179 MRLMINFD 186
             L++N  
Sbjct: 178 AGLIVNTK 185


>gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 188

 Score = 53.9 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D +   +RAGLP++ A AV    +   +RS F R  +   LG    ++ + +       +
Sbjct: 51  DTLAVCLRAGLPLATAAAVAAETAPPELRSSFTRAADLLALGADPDQAWAPVDA--DSVD 108

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +  + +IS  S+ G  L++++   +   R R    A+  +L    +A   I G L  C 
Sbjct: 109 FAELAALISRASRAGSALADSVGGFADATRRR----AENASLEAAERAGVKISGPLGLCF 164

Query: 141 STLV 144
               
Sbjct: 165 LPAF 168


>gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 294

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288


>gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 652

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 50/107 (46%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
                P+ L+ +    R GL ++ A+ ++V  +   +  E RR+      G + SE++ R
Sbjct: 427 IQSMIPDFLERMAGINRVGLTIAQAIGIMVNTNLGLLSYEIRRIKRDMDWGANFSEALMR 486

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             + +    ++   T+I+  S++ G + E LA  +   +  + +K +
Sbjct: 487 FEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKE 533



 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 13/185 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL-GLS 64
           R+ K      NA+  +    R G  +      +   +     V  EFR++       G  
Sbjct: 125 RSIKINLTLHNAVAYMYAMRRGGAELMSIFYALSENAPIYGEVALEFRQITRDVDYFGSD 184

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD--RKNMKAKVQAL 122
           +  ++  +    P  ++  F   +    + GG+LSE LA+  R+ ++  R   K  +  L
Sbjct: 185 MLTAMRHLSSTTPSAKLKDFLEDLLSVIESGGDLSEFLASRVRLYQEEARFEQKQFLTLL 244

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           SM A++   +  + P  +  ++          ++       L  V  A M IG  +   +
Sbjct: 245 SMVAESYVTLFVAGPLFLIIIMVVMG------MMGGSAVLQLSLVVYAIMPIGSFI--FI 296

Query: 183 INFDV 187
           +  DV
Sbjct: 297 LLIDV 301


>gi|313902412|ref|ZP_07835815.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313467343|gb|EFR62854.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 300

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+ I  + R GL +  ++ V       P+  + R        G  L + +  + + 
Sbjct: 159 LPGWLEDIALAARGGLSLRQSIEVANDVGEGPLVDDARDAFARIRAGQPLRQPLLELAQL 218

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            P  EV+     +      G  L + L    R++R
Sbjct: 219 YPHPEVTVALRTLVEAEVRGLPLPQTLDEHVRLMR 253


>gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 265

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 10/176 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLGLSLSES 68
                AL ++   +  G PV  A                V  E  R+     LG      
Sbjct: 90  RQLIAALAVMSAELSVGAPVVQACRAAAADLARIDHDGAVGPELARMAARAELGGDPG-- 147

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                       V   +   +V  + G  + + LA L   L  R++  A+ +A     +A
Sbjct: 148 -PESATRAGP--VRRLARSWAVSLEYGLPVGDVLAALREDLVSRQDFAARTRAGLAGPRA 204

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +A ++  LP     L          VL+    G +LL V  A  + G++    + +
Sbjct: 205 TAVVLAGLPVVGLVLGQAMGAHPARVLLESRIGGVLLVVGTALSVAGVVWADRIAD 260


>gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus
           assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 294

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D +     E R V+ 
Sbjct: 134 LAAVAQRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLV 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E + +    + + E+S    +++     GG   ++L  L +++ DR+  + 
Sbjct: 194 RVDSGLELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRL 253

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +     + AK S  ++  L    + L+    PG++ +
Sbjct: 254 QEYISKLSAKMSVVMMVFL--FPALLIVLAGPGFIAI 288


>gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7]
 gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7]
          Length = 298

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66
           +  KF  + P AL ++V S+ +G  V +A+  ++     +      + V+      LS  
Sbjct: 81  KMDKFDQNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  +   +  +       +I    + GG L++ L  L++ L D +N+K+++ +++   
Sbjct: 141 DAMILVSNSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSVTANG 200

Query: 127 -KASAWIIGSLPFCVSTLV 144
                 I+  +    + L+
Sbjct: 201 LAVGLIILCGVIPATAGLI 219


>gi|314956949|gb|EFT01079.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
          Length = 227

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 43  LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 102

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + S  
Sbjct: 103 MADELDSAEADAVLASLALAATHPRGASTTLKAIAGNIQQRLKVLRQVEAERSKPRNSVR 162

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +   +      ++  L   P G +L+ VA    +I ++ M 
Sbjct: 163 QITLVTIAMFGGLLVIGRSFLAPLATPP-GQVLVAVAVVMYVIALVQMY 210


>gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117]
 gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
          Length = 224

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 54/170 (31%), Gaps = 8/170 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFR--RVIETQHLGLSLSESISRMVR 74
            +  +   +R+GL    A+  +    +    +    +  +     +      +++     
Sbjct: 51  VIRELSALLRSGLSFYPAIDALLDAEEEHGKIVGALKELQATHRLNNSAPRGDALDG--- 107

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                 V      + + ++ G +L++ L  L+  L +    +    A     KA+  ++ 
Sbjct: 108 -NQSPAVQRLHWCLELSARSGASLADVLERLAEDLENALVAQQAFDAAMAGPKATIKLLT 166

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            LP              +  + +     + + + A   +   +  + ++ 
Sbjct: 167 WLPLVGFGFGMLLGIDVLGTIASSWAAQLSVLIGAVLWIANRIWCQRLMR 216


>gi|269217518|ref|ZP_06161372.1| type II secretion system protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212453|gb|EEZ78793.1| type II secretion system protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 186

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 39/100 (39%)

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             V  +    G   ++ L   +  + D     A  +A     KASA ++  LP     L 
Sbjct: 81  VAVCRLTRATGAPAADVLDACAAGITDAAESAAARRAALAGPKASARMLAWLPLLGLFLG 140

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                  ++ L++   G  LL +  AF  +GI  +R ++ 
Sbjct: 141 SLMGTDTLDFLLSAGLGRTLLALGLAFEALGIFWVRRLVR 180


>gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 635

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 8/179 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++  IK+   K     P   + ++    AG   + A  +   ++  P+    +   E   
Sbjct: 405 LRKWIKE-DEKLSAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEARPPLSKYVKVFAEMLD 463

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+S   +   + R  P  ++   + ++S    + G +++ L +L   L  R N   K +
Sbjct: 464 RGISRDRAFQWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELM-RLNAFRKER 522

Query: 121 ALSMEAKASAWIIGSLPF-CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               +      ++ +L F  ++  +     G    L     G      A +   +G  +
Sbjct: 523 DSVAKTYGGMMVLAALLFLGIAVAISAMLLGQFEKL-----GQATTAAAGSGRSLGFSI 576



 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 1/144 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  I  R      +       ++   +AG+ + +AV  +V      +  EF R+     
Sbjct: 164 LKGKISSRREDIDFNLHTLYITLLGFAKAGISIMEAVKELVTMDLGEISKEFARIYYAVR 223

Query: 61  LG-LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            G  +L  ++  +    P  +++     I    + GG+L   +      L   + +    
Sbjct: 224 YGNTTLKAAMLEVAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTE 283

Query: 120 QALSMEAKASAWIIGSLPFCVSTL 143
               +E  A  ++  SL      +
Sbjct: 284 YLKKLEMIAEVYLTVSLAIPTMVV 307


>gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
          Length = 213

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 1/167 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++VR +RAG     A ++   ++  PV    R V     L   ++  +    R   L
Sbjct: 43  ALELVVRELRAGAHPVRAFSIAADETGGPVAVALRAVAARSLLVAEVTAGLLAATRSSAL 102

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                       + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 103 PAYWERLGVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 162

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L+    G  LL V       G++    + +
Sbjct: 163 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 209


>gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1]
 gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1]
          Length = 330

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIETQHLGLSLSESIS 70
           D+ P  +D++      GL +  ++ VI          +  E          G +  +S++
Sbjct: 180 DEMPLFVDMLRLLQGVGLSLDQSMQVITHDFTSMLPVLSWELGVAQRQFAAGRTREQSLA 239

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+      +++     ++    + GG + E L      LR+ +    + +   +  K + 
Sbjct: 240 RLTTSFDNEDLRAIVRLLIQVDKHGGAVQEPLRLFGDRLREGRRATLRERIGRLTVKMTG 299

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +I +L   +  L+    PG M V+
Sbjct: 300 VMIVTLLPAL--LIVTAGPGIMTVV 322


>gi|288931798|ref|YP_003435858.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894046|gb|ADC65583.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 640

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  K   K  +  P   + +     +G+ + + + ++    +  +  EF  +  +  LG 
Sbjct: 423 LKNKILRKAEEKLPEFFEELAMLNESGVSIFEGIKLVAKSEAGILSKEFEGISRSVELGE 482

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISV---QSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            +++S+S++V  +       F+  + +     +   ++ +A   +SR +    + + K++
Sbjct: 483 PITKSLSKLVVRIKSD---IFAKAVPIAVKALETSTSIKDAFITVSRYVDSELSFRKKLK 539

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +  M   A  ++   +   V+ L+        + +  +  G 
Sbjct: 540 SNLMPYVAIIYLTVLVFLFVAYLLISKFLVTFSGMSVNFMGI 581


>gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1]
 gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
          Length = 306

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLG 62
            + R  +   D P A+D+       GL    A+            + S  R        G
Sbjct: 145 RRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRDLLGG 204

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  S +  R+   + +  ++ F+  +    Q+G ++SE L   +  +R     + +    
Sbjct: 205 MRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RREKSMA 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
             ++ A+  +I  +   +  L  +    +   L+
Sbjct: 262 FAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295


>gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47]
          Length = 306

 Score = 53.5 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLG 62
            + R  +   D P A+D+       GL    A+            + S  R        G
Sbjct: 145 RRARVLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRTQRPDRVLASACRGFQRDLLGG 204

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           +  S +  R+   + +  ++ F+  +    Q+G ++SE L   +  +R     + +    
Sbjct: 205 MRRSVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAE---RREKSMA 261

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
             ++ A+  +I  +   +  L  +    +   L+
Sbjct: 262 FAQSLATKRVIPLVVCFLPGLFVWPLGPFFTQLL 295


>gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599]
 gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 304

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + K+  A+  +  P    I+   V AG+P+  AV     +    +  E   +   + 
Sbjct: 149 LDRVDKRAKAEIREQVPIFFSIVQSLVEAGMPLQQAVKQTARRFDARLGRELASLEMGEK 208

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +  +++  +     +  ++  +  ++   + G ++S+ L+        ++  +A   
Sbjct: 209 RHGNWRKALEELAFRWEVDSLTTIALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATH 268

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              +  +   ++I  +   +  LV    P ++ +
Sbjct: 269 MNRLNIRLLPFVIMLMGLPLLFLV--MGPAFIGI 300


>gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A]
 gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 383

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 1/108 (0%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESIS 70
              + P AL  +      G    D +  +  +    +  E  +V+     LG   + ++S
Sbjct: 201 IQHEIPFALSYMSVLASGGSSPLDVIRRVAAEDYGEISRELSKVMYRIDALGEDGNTAMS 260

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +++    + +      IS   Q GG L   L   S+ L + +    K
Sbjct: 261 YLIQNTSSEHLRAVCIDISNAMQAGGGLQAYLELKSKELMEMRRQAQK 308


>gi|304405119|ref|ZP_07386779.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
 gi|304345998|gb|EFM11832.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
          Length = 311

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 33  VSDAVAVIVGQ--SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
           +  A+   V +     P+++ F ++     +      S+      +     ++F+ ++ V
Sbjct: 154 IRHALQRTVEERRLPAPMQAVFEQLYRNLSVKGDDEASLRVFAAALGHVWGNYFANILRV 213

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
               G  +S++L  L   +R  +    + ++  +E + + +      F    +    +P 
Sbjct: 214 ALSEGNPISDSLRELLTDMRRARRANEQERSKLLEIRIANFTPILFLFLFIGINLHYNPD 273

Query: 151 -YMNVLINDPRGHML----LGVAAAFMLIGIMVMRL 181
                 + DP+G  L    L +     ++GI + R 
Sbjct: 274 SAYRYYVLDPKGRDLVLNSLVLIFGSFVMGIWLSRR 309


>gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 273

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D P  L  +     +G+ +  A+      ++ P+  E R  +    +G     ++  M
Sbjct: 127 QRDLPYFLFTLAVLAESGMQLLPALDHYARNAAAPLGREVRSALAEIRMGQPPGMALLEM 186

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            + + +++++     +    + G   L+ AL   +    DR+  +   Q    +A     
Sbjct: 187 AQRLDVRDLTRAVGALVQTMEKGTEGLAAALRAQAAEAWDRR--RRLAQEAGAQASVKLL 244

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN 157
           +   L    + L     P     L  
Sbjct: 245 VPLVLFVLPAVLAMAAGPAIYAFLTQ 270


>gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 256

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 1/130 (0%)

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G    ++++ +        V   +    V    G  LS  L      LRDR  
Sbjct: 1   MARAVSAGERPGDALALVSVRAG-PAVRTVAAAWQVAEAAGAALSPVLRGAGASLRDRAE 59

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +V+A     +A++ ++ +LP     +        +  +     G  LL         
Sbjct: 60  TAREVEAALSGPRATSRLMTALPLVGLLMAAGLGIDVLGAITGSLIGWGLLVAGVGLTFA 119

Query: 175 GIMVMRLMIN 184
           G   M  ++ 
Sbjct: 120 GRAWMSRLVR 129


>gi|333025387|ref|ZP_08453451.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
 gi|332745239|gb|EGJ75680.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
          Length = 275

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG   ++A+A  V      +      ++     G  +  ++ +  R    + +
Sbjct: 104 LLAGEVRAGSGPAEALAHTVNAC-GELGPARADILAAARFGGDVPAALRQAARVPGAEGL 162

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP    
Sbjct: 163 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 222

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        + VL     G + L + +     G+     ++ 
Sbjct: 223 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 265


>gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM
           7109]
 gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
          Length = 386

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 31/203 (15%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-----------VRSEF 52
            +++R  +   D  ++     R V AG  V+DAV                     +  + 
Sbjct: 31  RVQRRQLELFRDLADSC---AREVAAGARVADAVESAAADCEGDEADAEGDTGTRLGGQL 87

Query: 53  RRVIETQHLGLSLSESISRMVR------YMP-----------LQEVSFFSTVISVQSQLG 95
             V     LG   + ++                          Q+V  F  +  +  + G
Sbjct: 88  ALVAAQVRLGALPTAALRDRGEVGSEGDRDGASTGNGSAELVAQDVEEFCELWELAERTG 147

Query: 96  GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            + +    ++   L      + K  A    A+ +  ++ ++P     +          +L
Sbjct: 148 MSFAPLADSIVADLEAHSAQQEKTAAAMAGARLTEVLLLAMPVGAVGIGQSMGLDPGGIL 207

Query: 156 INDPRGHMLLGVAAAFMLIGIMV 178
                G  LL V A     G++ 
Sbjct: 208 FGSVIGLGLLLVGAMLACTGVLW 230


>gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 253

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG PV  +V  +      P+     RV     LG   +E+ S +   +P  E      
Sbjct: 126 MRAGAPVDRSVLAVAEALDGPLAERLARVGRLLRLGAEPAEAWSTLAA-VPGAE-RLVGA 183

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +   +  G +L+ AL  L+  LR  +   A+    +   ++   I+  L  C       
Sbjct: 184 ALR-SATSGASLAGALTRLADDLRADRTTAAE----ATAQRSGVLIVLPLGLCFLPAFIL 238


>gi|302520916|ref|ZP_07273258.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302429811|gb|EFL01627.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 255

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG   ++A+A  V      +      ++     G  +  ++ +  R    + +
Sbjct: 84  LLAGEVRAGSGPAEALAHAVNAC-GELGPARADILAAARFGGDVPAALRQASRVPGAEGL 142

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L R L   ++ +A + A    A+A+A ++ +LP    
Sbjct: 143 VGLAACWHVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARATAGLLAALPLLGL 202

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        + VL     G + L + +     G+     ++ 
Sbjct: 203 LLGSAVGAAPLRVLFGSAPGFVCLVIGSGLEAAGVWWCLWLVR 245


>gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
           16841]
 gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
           16841]
          Length = 344

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  ++ KR      +FP  +  +     AG+ VS A  +        +  E +RV+    
Sbjct: 191 VNAVVSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEGTLYKEMKRVLVDFD 250

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +S  E+ S+ +        +  +T I      G +    L    R L D   ++ K  
Sbjct: 251 NNVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLF---RQLNDESWLEHKHN 307

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFT 147
           A  M  K  + ++         ++   
Sbjct: 308 ARRMGEKIQSKLLLPTMLMFGGIIILI 334


>gi|319791843|ref|YP_004153483.1| general secretion pathway protein f [Variovorax paradoxus EPS]
 gi|315594306|gb|ADU35372.1| general secretion pathway protein F [Variovorax paradoxus EPS]
          Length = 412

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++  +P R+    +    + G   + ++S        +E 
Sbjct: 82  LAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEVNAGSPFARALS-----AHSREF 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S   T +    +  GNL   L  L+  L +R+ ++ K+      A   A +       V 
Sbjct: 137 SPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLVG---AALYPAIVTLVAIVIVI 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            LV +  P    V     R    L      +  G+
Sbjct: 194 FLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGV 228


>gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
 gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain
           protein [Blautia hansenii DSM 20583]
          Length = 402

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----------QSSDPVRSEFRRVIET 58
             +   D+P+ +  +V  +RAG  +  A+  I                    E  R  + 
Sbjct: 248 RKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKIADGYLRSREKYHAKERSAYEEIVRTCKE 307

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKA 117
              G+  +E+  R      + +    S ++    + G  NL E L     +  D +   A
Sbjct: 308 MQGGIYEAEAYERFGTRCGISQYKILSVLLVQNLKKGNQNLLELLEREEAVAEDERKRSA 367

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           KV+      K    ++  +   +  L+    P + + L
Sbjct: 368 KVRGEEASTKL---LLPMVLQLIVVLMILMIPAFFSFL 402


>gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 307

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
              F     + LD++  S+ AG  V +A+      S DP     R  ++   L G +   
Sbjct: 160 RRDFRHVVGSYLDLVAMSLSAGRGVPEALDAASSLSDDPAMLRIRDALDVARLRGDTPWA 219

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEA 126
           ++ R+   + + E+   S  +++ ++ G  + E+L   +  +R R    A+     + E+
Sbjct: 220 ALGRLGTQLRIDELRDLSAALALVAEDGAKIRESLGARASSMRRRDLSDAEGKAGENSES 279

Query: 127 KASAWIIGSLPFCVSTL 143
              A ++ ++ F V  +
Sbjct: 280 MLVAQLVVAMGFIVFLV 296


>gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 304

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           +   F       LD++  ++  G  + +A+      S    +R     + + +  G+S  
Sbjct: 156 KRRDFRRVLGAYLDLVAMNLAGGRGLPEALMAAAEVSDGWALRRIRDALTDARVTGISQW 215

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S++   + + E+      +++ ++ G  + E+LA  +  +R R+  + +    +  A
Sbjct: 216 NALSQLGDALDVDELKDLGAALALVAEDGAKVRESLAARAETMRHRELSEIE---GAAGA 272

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           K+ + ++  +  C   +V+   P    V+
Sbjct: 273 KSQSMLVAQMLLCAGFMVFLLYPAMARVM 301


>gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 300

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 1/174 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I+ +        P AL  +     +G    D +  I  +    + +EFR+V+    
Sbjct: 108 LQNQIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIAREDYGQISNEFRKVLFRVD 167

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG  +  +++ +V+  P          I+     GG L   L   S+ L   +    K 
Sbjct: 168 ILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGGLKSYLETKSKELMAIRRQTYKE 227

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              S+      ++ G +      ++     G + + +     H +       ++
Sbjct: 228 FVESLAVFGEGYLGGVVMTITLAILGVVISGALGIQLGPFSAHDMFNYLIYLLI 281


>gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 304

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQH-L 61
            +K R  K L++ P+ +  +     +GL + +    I   ++ + +  + R +      L
Sbjct: 115 RVKNRATKLLEEIPHFIGYMSTLATSGLSLEEIFKAIAKEETDEDIVKDARFITRNIEIL 174

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ L  ++  ++   P    S       + SQ GG+L E     +++  + K M  +   
Sbjct: 175 GMDLITAVKDLINRTPPGPYSELLEGAIITSQSGGDLKEYFNATAKVQLEEKKMLLQKTT 234

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            S+ + A  + I  + F +  ++  +  G M+ 
Sbjct: 235 ESLGSVAEIYTILLIVFPLLAVIMLSIMGIMSP 267


>gi|89897406|ref|YP_520893.1| hypothetical protein DSY4660 [Desulfitobacterium hafniense Y51]
 gi|89336854|dbj|BAE86449.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 309

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 5/175 (2%)

Query: 9   TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66
                 +   AL II  + +R+   +  AV   +   + PVRS F   +    L    L 
Sbjct: 128 KKNIAAELETALSIITTAYLRS-EDILTAVEESIQYLNPPVRSVFAGFLTQVKLVNPDLD 186

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++  M   +       +   I+       +L   L  +   L D + + A+++ L  E 
Sbjct: 187 KALHAMKPKIDNDVFHEWCDAIAACQHDR-SLKTILTPIVSKLSDMRIVNAELEYLVFEP 245

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180
           +    I+  L      +++F +  + + L++   G ++L V AA + I    V+R
Sbjct: 246 RKEFIIMALLVAGNVPIMFFLNKDWYHTLMHTAVGQIILAVCAAAIFISTAFVIR 300


>gi|282863648|ref|ZP_06272706.1| type II secretion system protein [Streptomyces sp. ACTE]
 gi|282561349|gb|EFB66893.1| type II secretion system protein [Streptomyces sp. ACTE]
          Length = 294

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 2/162 (1%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +V  +RAG     A+    G+ +  + S    V+     G  + E++ R       + ++
Sbjct: 130 VVGELRAGREPGRALLTAGGEGA--LGSAEAAVLAAARFGGDVPEALRRASLVPGFEGLA 187

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +    V    G  L+  LA +   LR  +  + +++A    A ++  ++  LP     
Sbjct: 188 GMAACWRVAVDGGAGLATGLARIEHALRAERRGREELRAQLAGAWSTVVVLALLPVVGLG 247

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L        + VL++ P G   L   +     G+     ++ 
Sbjct: 248 LGAALGADPLRVLLHSPGGLACLVAGSLLEAAGLFWATRIVR 289


>gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 208

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
            + D P A+ ++   +R GL   +AV  +      P+ +E R V     LG   + +   
Sbjct: 63  MVADLPIAIGLLAACLRGGLSWDEAVEAVCDAVGGPLGAELRAVAARVRLGADPAAAWLA 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
           + +     E++  +  ++     G  L+ AL  L
Sbjct: 123 LAQE---PELAPLARTVARAVDSGAALAPALTRL 153


>gi|118475095|ref|YP_892177.1| type II secretion system protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414321|gb|ABK82741.1| type II secretion system protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 413

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +  +     AG+ + D++  ++  ++D  ++  F  V +  + G+S++ES++        
Sbjct: 79  IRQLSVMTNAGISIHDSIKEVIKSTTDKRLKLIFENVNDDLNAGMSITESLNLYSD---- 134

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E+      +    +  GN++E+L  L+ IL++  + + K +      +    +I ++  
Sbjct: 135 -ELGNVVIAMVRLGEESGNMAESLQKLAEILQEIWDNQRKFKK---AIRYPTLVICAIAI 190

Query: 139 CVSTLVYFTSPGYMNVL 155
               L+    P + ++ 
Sbjct: 191 AFVLLMVLVVPTFRDIF 207


>gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii
           DSM 10542]
 gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii
           DSM 10542]
          Length = 416

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGL +   + ++  Q+ + P+      V      GLSLS ++ +     P    
Sbjct: 86  MATMVSAGLSLIRTLGILADQTENKPLAKVLGIVRSDVETGLSLSNALVKHPEAFPP--- 142

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 I    + GG L ++L + +        ++AKV++         +I  +    + 
Sbjct: 143 --IMVNIVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSAMTYPVVVLFIAIAAVIGML 200

Query: 142 TLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             +                 P    VL++     +L  V     ++GI   R
Sbjct: 201 LFIVPIFKDMFEGLGGELPAPTQFLVLLSSWMKWLLPLVLVVSAVVGIWWQR 252


>gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 [Rhodococcus erythropolis PR4]
 gi|226183109|dbj|BAH31213.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 262

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 1/164 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++++  +  G   + A +V   + S  V + FR       LG S + + + +      +
Sbjct: 95  LEVLIAELSVGAHPAVASSVAGEECSGEVSAVFRSAGARARLGGSAAAAFA-VPDSCIER 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E S   +V  V  Q G  L+E L  +   +  R+  + + +A    A+A+A ++  LP  
Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        + VL     G +LL +  A +  G++    + 
Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257


>gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
          Length = 374

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + +  +R  K L +  + +D I R V AG    +AV       +   +R +         
Sbjct: 24  RMMKTRRQMKTLAEVRDVVDAIAREVAAGARPLEAVEHAAEGLNSETLRHQLDVACVRVR 83

Query: 61  LGLSLSESISRMVRYMPLQEV--SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           LG +     +               F     +  + G  L+         +  +    +K
Sbjct: 84  LGAAPGAGAAGAAPGSDAPSFLAHLFHI-WGISRRHGVGLATLARAHVTDIDAQLAHISK 142

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             + +  A+ +  ++ +LP     L   +  G +  L+ +  G +L  V    +  G + 
Sbjct: 143 STSATAGARLTVTVLLALPVGAVALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLW 202


>gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
           43243]
          Length = 444

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 15/165 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDP----VRS 50
           +  ++ R  +   D+   +  +     AG+ V  A   I                  V  
Sbjct: 281 RKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVRRAWEKIALDYNNKMKDMPKEKYHAVYE 340

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRIL 109
           E    +     G+S + + +   R   ++E     T++    + G   LS  L   S   
Sbjct: 341 EMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRKLGTLLEQNVRKGTRGLSVLLEQESE-- 398

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +    +  +     E   +  ++  +      +V    P  M+ 
Sbjct: 399 -EAFEQRKNLAKQLGEEAGTKLLLPMILMLAVVMVIVMVPAMMSF 442


>gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus
           (Silurana) tropicalis]
          Length = 308

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 9/148 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++ D  +      +    + G S + ++++  R     E 
Sbjct: 78  LAGLVASGLPLERALTALADEAEDERQHHLVAALRAEVNAGSSFARALTQHPR-----EF 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L +R+ ++AK+      A   A +       V 
Sbjct: 133 SDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIG---AALYPAIVTVVALVIVL 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
            LV +  P    V     R    L VA 
Sbjct: 190 FLVGYVVPQVAGVFAGTKRALPWLTVAM 217


>gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4]
          Length = 408

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-------PVRSEFRR 54
           K   K+   + + D+P  L   V    AG PV  A    V  +         PV  E R 
Sbjct: 251 KEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQVVDAESKNTVLIHPVYREMRT 310

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113
            +     G     +     R + L     F++++      GG +L   L      +    
Sbjct: 311 ALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVSTGGKDLRRLLE---EEMETAF 367

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             + ++     E  ++  +I         +V   +P ++++
Sbjct: 368 RQRKELALRKGEEASTKLLIPMFLMLGVVMVMVVAPAFLSL 408


>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
           voltae A3]
 gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
          Length = 294

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLG 62
           L + +  KF  + P AL I+V S+ +G  V +++  I+      V   F ++I       
Sbjct: 73  LYENKIDKFEKNLPKALYIMVLSLNSGRSVIESINEIINSDIKEVNIAFSKIILLMSERK 132

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           LS  +S+  +   +  +       +I    + GGNL+E+L  L++ L D  N+K ++ ++
Sbjct: 133 LSFEDSVLIVSNSLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSV 192

Query: 123 SMEAKASAWIIGSLPF 138
           +    +   II  +  
Sbjct: 193 ASNGLSVGIIILCIMI 208


>gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp.
           P08]
          Length = 147

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K+R A      P  L ++  ++ AGLP+  AV  +      P   + RR+      G+ 
Sbjct: 1   MKQRRAA---QLPETLLMLSSTMEAGLPLRAAVTTVAESLEGPCAEDLRRLASALAAGVP 57

Query: 65  LSESISRMVR----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            S++ + +        P Q+       +S     G  +SE L+  +  L+
Sbjct: 58  DSKAWNDLAAVTVWRDPAQD-------VSRAVDSGEGISELLSAHAAQLQ 100


>gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
 gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
          Length = 376

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--------QSSDPVRSEF 52
           ++   ++R  + ++D+P  +  +   + AG+ V  A   I          ++   V  E 
Sbjct: 215 IRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRKITEGYMKEKEDENERYVYEEM 274

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRD 111
           R+       G++ +E      R   LQ       ++S   + G   LSE L   S    +
Sbjct: 275 RQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQNLRKGTKGLSELLKLESIQAFE 334

Query: 112 RKNMKAKVQALSMEAKA 128
            +  +AK        K 
Sbjct: 335 ERKARAKRLGEEAGTKL 351


>gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 615

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           + + I+ R         P  L  I      G+ +  A+ +I    +  + SE R V +  
Sbjct: 402 LSYEIRSRYVRNVEKQLPELLREISDMRDIGMTLQSAITMISSSKNSVLSSEIRIVSDEM 461

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G SLS ++ RM   + L  V    +++   S++   + E LA     L     MK+K
Sbjct: 462 KYGSSLSGALVRMEERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSK 520



 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64
           R  +   D P A+  +  ++ + + + D    +         V  E   ++    L G  
Sbjct: 114 RKNRIDMDLPYAITYMQ-ALSSTIVLYDIFRSVYEAEDLYGEVSRECGIIVRDVELFGED 172

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +++ +V   P +        + +  + GGNL+      S   R+    + +     +
Sbjct: 173 LLSAMNYVVTITPSERFKELIGDLILVYRSGGNLTNFFNAKSESYREIARQELEALLQFL 232

Query: 125 EAKASAWIIGSL--PFCVSTLVYFTS 148
           E  A  ++   +  P  +  ++   +
Sbjct: 233 EMIAEIYVTAFVAGPIAIIIMLVAQN 258


>gi|308271306|emb|CBX27914.1| hypothetical protein N47_G32380 [uncultured Desulfobacterium sp.]
          Length = 411

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 27/182 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ +  A  +++  +    +R    R+I     G  ++++     R+ P    
Sbjct: 82  MSTLLRSGMRIDKAFDILIHATEKQDLREVLLRIIADIKAGKGVAQAFDNTGRFGP---- 137

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +   S+  G L EA  N++R LR +   +A+V+         A+++ +      
Sbjct: 138 --LVISMIHVSEAVGELREAFENIARYLRFQIQFRAEVRNAMS---YPAFLVFASGVTFF 192

Query: 142 TLVYFTSPGYMNVL----INDPRGHMLLGVAAAF-----------MLIGIMVMRLM--IN 184
            +  F  P + ++        P     L   + +           +++G +V+R +  + 
Sbjct: 193 VIFQFIVPRFFSIFGPQGTRLPLPAKALYAISGWFNFTSIGIMAGLVVGFLVLRRLNPVK 252

Query: 185 FD 186
             
Sbjct: 253 IK 254


>gi|314972765|gb|EFT16862.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 288

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271


>gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain
           protein [Bryantella formatexigens DSM 14469]
 gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain
           protein [Bryantella formatexigens DSM 14469]
          Length = 490

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVR---SEFRR 54
           +   + R  + L D+P+ L  +   + AGL + +A   I  +  D     VR    E   
Sbjct: 333 QQAQEHRRRQMLMDYPDLLFKLSMLLNAGLTMQNAFFKIALEYRDRETPEVRFAYEEMLT 392

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRI-LRDR 112
                  G+  + S     R   +   +   T++S   Q G   L++ L   +   + +R
Sbjct: 393 SYYEMQSGVPEARSYENFGRRCGVGSYNKLGTMLSANLQKGSQGLAKLLQEEAAFSMEER 452

Query: 113 KNMKAKV 119
             M  K+
Sbjct: 453 SQMARKL 459


>gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51]
 gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 309

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91
           +  AV   +   + PV S F+  +    L    ++ ++  +   +       +   + + 
Sbjct: 152 ILTAVEENLPYLNPPVLSVFKGFVSRVRLVDPNVTAALHDVKMRIDNAVFHEWCDAL-IS 210

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            Q   +L   L  +   L D + +  +++ +  E +    I+  L      L+YF +  +
Sbjct: 211 CQHDRSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMVVLVVGNIPLMYFLNQDW 270

Query: 152 MNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180
            + L++ P G ++L + AA + +    V++
Sbjct: 271 YHTLMHTPLGQIVLTICAAVIFVSTAFVIK 300


>gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289715376|gb|EFD79388.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 241

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 1/155 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 86  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 145

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 146 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 205

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                L        ++ L+    G  LL V     
Sbjct: 206 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLE 240


>gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 356

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           K     P+ L ++  ++RAG+   ++    +      + +   +       G +  E++ 
Sbjct: 111 KIEKVLPDMLLLMAANLRAGMIPENSFISSMKPEFGKLNNLLNKAAIETQAGKTFPEALL 170

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQALSMEA 126
            M      +       +IS   + G  L   L NL+  L      R +M+A+V++ S+  
Sbjct: 171 EMNDLTSSEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKSYSLFI 230

Query: 127 KASAWIIGSLPFCVSTLVYFT 147
             +A + G L + VS+ +   
Sbjct: 231 FIAATLAGPLLYGVSSFLIGI 251


>gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
           7942]
 gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
           7942]
          Length = 410

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+  A+ ++  Q+ +P +R   +++      GL+LS+S+ +  +       
Sbjct: 77  LSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKV-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG L + L  LS++L D   ++ ++++      A   I   +   ++
Sbjct: 132 DGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAVFVIAILVFLGMT 191

Query: 142 TLVYFTSPGYMN 153
             +  T  G   
Sbjct: 192 IFIIPTFAGIFE 203


>gi|314929716|gb|EFS93547.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
          Length = 288

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGSVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271


>gi|25029119|ref|NP_739173.1| hypothetical protein CE2563 [Corynebacterium efficiens YS-314]
 gi|259505885|ref|ZP_05748787.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium efficiens YS-314]
 gi|23494406|dbj|BAC19373.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166559|gb|EEW51113.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium efficiens YS-314]
          Length = 94

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  +     + ++  F   +      G ++++ L   +  +R ++  +A+ +A  +  K 
Sbjct: 4   LDGLATRTTVPDLRRFVRAVVQADAYGISIADVLRTQADEMRLKRRQRAEEKAQKLPVKV 63

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A ++  +   +  +V    P  M+++
Sbjct: 64  LAPVMLCILPVLFIVV--MGPAAMSIV 88


>gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 262

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             +     P A D++   + AG    +A   +      PV +   R      LG   S +
Sbjct: 114 RKEAARQLPLAADLMAACISAGASPREAAEAVGESLGGPVGAGLARTAAQLRLGAEPSPA 173

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                    +      +  +      G   ++ ++ L+  LR  +      +    +   
Sbjct: 174 WGCFGE---IPGAEPLARCLERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLI 230

Query: 129 SAWI-IGSLPFCVSTLV 144
           +A + +  LP  ++  V
Sbjct: 231 TAPVGLCFLPAFLAVGV 247


>gi|229494787|ref|ZP_04388543.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229318283|gb|EEN84148.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 262

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 1/164 (0%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++++  +  G   + A +V   +    V + FR       LG S + + + +      +
Sbjct: 95  LEVLIAELSVGAHPAAASSVAGEECIGEVSAVFRSAGARARLGGSAAAAFA-VPDSCIER 153

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E S   +V  V  Q G  L+E L  +   +  R+  + + +A    A+A+A ++  LP  
Sbjct: 154 EFSRIGSVWRVADQHGLALAELLGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLL 213

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        + VL     G +LL +  A +  G++    + 
Sbjct: 214 GIGLGQLMGASPLRVLFGGGLGGVLLVIGTACVSAGLLWTDRIT 257


>gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
 gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
          Length = 434

 Score = 52.4 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           +    K+R  + + D+P  +D ++  + AG+ +  +   ++       +  E R  +   
Sbjct: 282 LSKQEKERKQQLMIDYPELVDRLILYLGAGVTIRGSFVRMVQNDDESALMKELRYTLNEI 341

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+   E+   M   + +       +++S     G    + +  ++   +     + ++
Sbjct: 342 QAGIPEGEAYYNMGHRINIPVYMKLMSMLSQNVSKGTK--DIMIMMAGEEQAALQTRKEL 399

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                E   +  +   +      +V    P  M+ 
Sbjct: 400 ARKKGEEAGTRLLFPMIVLLGVVMVIVVLPAVMSF 434


>gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
 gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
          Length = 194

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIE 57
           +++++ K+    L+  P  +DI    V++G+ +  A++    +    +  +     ++ +
Sbjct: 51  IRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYTAKKFILINPDLSLIVTKITK 110

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
              +   L  +I    +     E+  F + +      G  + + L  L++ +R+ + +  
Sbjct: 111 RAEIN-GLESAIKEFQQLSTETEIKMFCSALQYSISFGSTVYDQLIKLAQDMREMQLLVT 169

Query: 118 KVQALSMEAKASA 130
           + +   +  K ++
Sbjct: 170 EEKNSKLSTKLTS 182


>gi|76803231|ref|YP_331326.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76559096|emb|CAI50694.1| transmembrane protein (homolog 5 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 568

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 8/148 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGL 63
            + RT  F +  P+AL ++ R V  G+ V  AVA    +        F      Q  L +
Sbjct: 339 ARDRTDAFDESLPDALYLVGRRVSDGVSVERAVADAAEELDGVAGEVFTDAARRQRRLRV 398

Query: 64  SLSE-------SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +         ++  +           F    +  +  G  L E   +L  + R     +
Sbjct: 399 DIETAFRGSHGALEELTSRRAESAARLFGVAANAGAPAGRALIETADHLDELRRVETEAR 458

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLV 144
             +  ++     +A   G L    +  +
Sbjct: 459 RDLGQVTTTLSNTAAFFGPLVGGATVAL 486


>gi|313837838|gb|EFS75552.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
          Length = 283

 Score = 52.0 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271


>gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 217

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++     LD++   +RAGLP+  A  +    + D  RS   R+  +  LG S+  + + +
Sbjct: 73  VEQLAFDLDLVAICLRAGLPIPRAFELAARATQD--RSGLGRLGRSLALG-SVDNAFAGV 129

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
               P+ E     +++      G  L+  L+ L+  +
Sbjct: 130 QD--PVGEHRTVVSLVEFSRSTGVALAPLLSGLASDM 164


>gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122]
 gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122]
          Length = 212

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESI 69
           +         D +   +RAGL    A A+   +  D +    R        G+ + +E++
Sbjct: 69  RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDDELAGVCRDAHRAWSTGVLTRAEAL 128

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + +        +  F+  +    + G  +   L  LSR        + K++    +A   
Sbjct: 129 ASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSR--ESSGAYRTKIEERVAKAPIE 186

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNV 154
             I  +     + L+    P  +++
Sbjct: 187 MLIPTATLILPAMLIVILGPVLLDL 211


>gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
           6301]
 gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
           6301]
          Length = 410

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+  A+ ++  Q+ +P +R   +++      GL+LS+S+ +  +       
Sbjct: 77  LSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKV-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG L + L  LS++L D   ++ +++           +  +      
Sbjct: 132 DGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMK---SAMTYPMAVFVTAILVFL 188

Query: 142 TLVYFTSPGYMNVL 155
            +  F  P +  + 
Sbjct: 189 GMTIFIIPTFAGIF 202


>gi|258510584|ref|YP_003184018.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477310|gb|ACV57629.1| hypothetical protein Aaci_0581 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 278

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           V AG  V + +     +   P+++ F R  +     LS+++ +       P    S+   
Sbjct: 119 VEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSVADWLRYTADTTPSNYWSYVCN 178

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +      GG+L      ++R L+ R+  +     +  + +  A  +          +Y 
Sbjct: 179 GVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRKEATQLLLAMLVSPAALYL 234

Query: 147 TSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                ++ L+  +P   +L  VA    ++     R M  
Sbjct: 235 MFRRTLDNLMQAEPFTQVLFAVALVGYVVLFWFARRMAR 273


>gi|257793108|ref|YP_003186506.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479800|gb|ACV60117.1| hypothetical protein Aaci_3121 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 278

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           V AG  V + +     +   P+++ F R  +     LS+++ +       P    S+   
Sbjct: 119 VEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLSVADWLRYTADTTPSNYWSYVCN 178

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +      GG+L      ++R L+ R+  +     +  + +  A  +          +Y 
Sbjct: 179 GVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRKEATQLLLAMLVSPAALYL 234

Query: 147 TSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                ++ L+  +P   +L  +A    ++     R M  
Sbjct: 235 MFRRTLDNLMQAEPFTQVLFAIALVGYVVLFWFARRMAR 273


>gi|228912546|ref|ZP_04076211.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
           200]
 gi|228847116|gb|EEM92105.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
           200]
          Length = 307

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 112 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 172 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 231

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  L+   S      L     G + L V
Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPILIMLMSKEAYGFLAGSMMGKIALAV 282


>gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A]
 gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 667

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 60/151 (39%), Gaps = 4/151 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  +  D  P  L  +      G+ ++DA+A+    +   +RSE +  +       +L 
Sbjct: 455 RKIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGKLRSEIKCTVADIRWNSNLE 514

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E++ R    +         T+I+  S+  G++ + ++ ++       +++  ++      
Sbjct: 515 EALKRFEARIRTNMTRRSLTLIAKASESTGDIHKVISTVADD----ADIEKNLKKERSAE 570

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                 I  + FCV  ++ +    +    ++
Sbjct: 571 MFIYVFIIFVTFCVFLVIVYVLAAFFLPALD 601



 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 13/181 (7%)

Query: 8   RTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61
           R        P+A   L ++ R    G+ + D +  +   S        EF  +I      
Sbjct: 154 RKRAINATMPHATAFLYVLQRG--GGMTIFDIMKSLSKHSHLYGTASHEFGNIIRDVEYF 211

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK--- 118
           G  L +++       P ++       +      GG+++  L N + + +   N + K   
Sbjct: 212 GKDLQDALWNAADRTPSEQFKDLVDGLISIVSGGGDITLYLKNKTDLYKSNANKEHKRFL 271

Query: 119 -VQALSMEAKASAWIIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
               L  E   + +++G L    +  ++     G    L     G +  G A   + + +
Sbjct: 272 DTLGLLAEVYITVFVVGPLFLMVILVVMNMIDNGGATNLYILVYGAIPFGTAIFLVFLDM 331

Query: 177 M 177
           +
Sbjct: 332 L 332


>gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 296

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIE 57
           +     +R  +   +    + ++     AG+ V  A+ V+  +       +  E R V+ 
Sbjct: 136 LAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQALRVLSHEGQTLLPVLTQELRLVLA 195

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               GL L E +++  R + + E +    ++    Q GG   ++L  L ++L DR+  + 
Sbjct: 196 RVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQGGGAMKSLLALKQLLDDRRLTRL 255

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +     M AK S  ++  L    + L+    PG+
Sbjct: 256 QEYISKMSAKMSVVMMMFL--FPALLIVLAGPGF 287


>gi|328906785|gb|EGG26556.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 288

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 16  FPNALDIIVRSVRA----GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
              ALD  VR V A    G  +  AV +   ++   +     +++      +   E+  R
Sbjct: 104 LMEALDRWVRQVAAVLPQGRDIITAVRISRPRAPKLIAGAVDQLVSRLDGRMEPREAFQR 163

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M   +   E       +++ +      S  L  ++  ++ R  +  +V+A   + + +  
Sbjct: 164 MADELDSSEADAVLASLALAATHPRGASVTLKAIAGTIQQRLKVLRQVEAERSKPRNAVR 223

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            I  +   +  ++      ++  L   P G +L+  A    +  ++ M 
Sbjct: 224 QITLVTIAMFGVLLVVGRSFLAPLATPP-GQVLVTAAVVMYVTALVQMY 271


>gi|251795114|ref|YP_003009845.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
 gi|247542740|gb|ACS99758.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
          Length = 311

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 75/190 (39%), Gaps = 9/190 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRS--VRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVI 56
           ++ ++ +R  +   DF  A+++  +   V  G  V  A+   V +     P++S F ++ 
Sbjct: 120 LRAMLVQRQMQLQMDFLPAIELFYQCYLVTGGRQVRTALQRTVEERRLLGPMQSVFEQLY 179

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
               +      S+      +      +F  ++ V    G  ++E+L  L   +R  +   
Sbjct: 180 RNLSVRGDDEASLRIFSAALGHVWGDYFVNIMRVALAEGSPIAESLKELLGDMRKARRAN 239

Query: 117 AKVQALSMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM--- 172
            + +   +E + + +  +  L F +   V +         + DP+G  +L  A   +   
Sbjct: 240 EQERNKLLEIRIANFTPVLFLAFYIGINVRYNRENSYYYYLIDPQGRDMLLNAIVLIFAS 299

Query: 173 -LIGIMVMRL 181
            L+G+ + R 
Sbjct: 300 FLMGLWLSRK 309


>gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 349

 Score = 52.0 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    + R        PN    +     +G+ + +AV ++ G     +    R++     
Sbjct: 124 LDFREQSRMRNLETALPNFFRDLAGMNDSGMTLPNAVHLVAGAEYGTLSPHIRKLDNEMS 183

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E++ R  + +          +I+  S+ GG++SE L   +           +V 
Sbjct: 184 WGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTF-------EVV 236

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIG 175
            L+ E + +  I   +     T+  F     ++  ++     G      AA+   +G
Sbjct: 237 NLAQERRNNMLIYVIIVIVSFTVFLFVIAVLVSSFLSTMATAGTAAQVTAASSKFMG 293


>gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 332

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 29  AGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            GL V  +++VIV   +  +     EF         G +  +S++R+ +     +++   
Sbjct: 195 VGLSVDQSLSVIVNDFTPVLPVLGHEFGVSTAVYARGRTREQSLARLSQGFDDDDLAAIC 254

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            ++    + GG + E L   ++ +RD++  + K +   +  K +  +I +L   +  +
Sbjct: 255 RLLVQVDRHGGAVQEPLNRFAQRIRDKRRFELKEKIGRLTVKMTGVMIVTLLPALLIV 312


>gi|148241117|ref|YP_001226274.1| Type II secretory pathway, component PulF [Synechococcus sp.
           RCC307]
 gi|147849427|emb|CAK26921.1| Type II secretory pathway, component PulF [Synechococcus sp.
           RCC307]
          Length = 410

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   V AG+P+  ++ ++  Q   P+   F+R ++   L ++   S+   +R  P Q   
Sbjct: 79  MAALVSAGVPIVRSLEILAEQQKLPM---FKRALQRLSLDVNQGSSLGSALRRWP-QVFD 134

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             S  +    + GG L E L  L+++L D   ++ +++           I  ++   ++ 
Sbjct: 135 ALSVAMVEAGEAGGVLEEVLKRLAKLLEDNAKLQNQIRGALGYPVTVLVIAIAVFLGMTI 194

Query: 143 LVYFTSPGYMNVL 155
            +  T  G    L
Sbjct: 195 FLIPTFAGIFEDL 207


>gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 271

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS---SDPVRSEFRRVIETQH 60
              +R     +     L +++  +RAG  +  + A+ V        P+  E +  +    
Sbjct: 109 RKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPLYKELKLFLFELS 168

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR--ILRDRKNMKAK 118
            G     + + +     +  +   + ++ + S+LG  L +A+        L+    +  K
Sbjct: 169 AGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEGLALKKNILLAKK 228

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V   +M       I+   P  +  + +  +   MNVL
Sbjct: 229 VNKKAMHTTFP-IILICFPMFLVLVFFPAALQVMNVL 264


>gi|215447993|ref|ZP_03434745.1| transmembrane protein [Mycobacterium tuberculosis T85]
          Length = 217

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 1/155 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           AL+++V  +RAG     A ++   ++  PV    R V     LG  ++  +    R   L
Sbjct: 62  ALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL 121

Query: 79  QEV-SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +    + S  G  ++  +    R + +R+   A+V A    A+ASA I+  LP
Sbjct: 122 PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                L        ++ L+    G  LL V     
Sbjct: 182 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLE 216


>gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1]
 gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1]
          Length = 591

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 10/179 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-----SDPVRSEFRRVIETQHLG 62
           R      +FP     +   V +GL    A   I   S     S  +   F  ++    LG
Sbjct: 97  RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKSAELSQRFILLVR--VLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                + S +    P               + GG++++ L   +R+L     +K K+ A 
Sbjct: 155 RDPLTAFSMLAHRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIAD 214

Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178
            +     A++ +  L     T++YF +  +++       P G  L+      M+ G+++
Sbjct: 215 RLAGLLEAYLALVLLSMISLTVMYFVTVSFISAVPFGLSPIGLFLVLYVLIPMISGMII 273


>gi|258650977|ref|YP_003200133.1| Flp pilus assembly protein TadB-like protein [Nakamurella
           multipartita DSM 44233]
 gi|258554202|gb|ACV77144.1| Flp pilus assembly protein TadB-like protein [Nakamurella
           multipartita DSM 44233]
          Length = 270

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 42/103 (40%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           ++F S+   +  + G      +  ++  L D+        A     + S +++ +LP   
Sbjct: 166 LAFLSSGWLLSRRHGVAFGRVVTAVADELSDQLAADQTRTAQLAGPRMSGYVMAALPLMG 225

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             L        + VL+  P G++LL +  A +  G++    ++
Sbjct: 226 VVLGAGMGVDPVAVLLGSPLGNLLLVIGVALLCAGLLWSARIV 268


>gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
 gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans
           PW2]
          Length = 221

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-LSLSESISRMVRYM 76
             +DI+   + AGL    A+ +     +  +     +      +G  +   +++     +
Sbjct: 83  EMIDIVRLGLSAGLSFDAALELFCANRATSLARRMAQASLAWRIGSATRETALAGAATDL 142

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWI 132
             + +  F+  +S    LG  L+E LA  SR +R     + +        K     SA I
Sbjct: 143 GARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLIPTSALI 202

Query: 133 IGS 135
           + +
Sbjct: 203 LPA 205


>gi|206972822|ref|ZP_03233744.1| membrane protein, putative [Bacillus cereus AH1134]
 gi|206731706|gb|EDZ48906.1| membrane protein, putative [Bacillus cereus AH1134]
          Length = 310

 Score = 51.6 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGYLAGSMMGKIALAV 285


>gi|228950019|ref|ZP_04112207.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809666|gb|EEM56099.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 292

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 97  RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 156

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 157 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 216

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 217 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSLMGKIALAV 267


>gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
 gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
          Length = 211

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +DD    LD++  ++ +G  V+DA+ ++  +  +P+    R+V+  +  G++ +++   +
Sbjct: 69  VDDLAAVLDLMALALDSGCAVTDALELVADEVPEPLAGHLRQVVAARRWGVTGADAWKGL 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
                       +  +++    G   +E +   +  L
Sbjct: 129 PSQWGP-----VAQALTLAQLAGAPPAETIRRAAADL 160


>gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 311

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 57/147 (38%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +   +K+R      + P  +D++      G  +  ++  +  +  D +     E +    
Sbjct: 147 LSSWVKRRRRAVDKELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       ++S    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLSSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           K +   +  K +  ++ +L   +  ++
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293


>gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
           14600]
 gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
           14600]
          Length = 464

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 13/161 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-----GQSSDPVRSE----FRRV 55
           +K+R      D+P+ +  I   + AG+ V +A+  I       +       E       +
Sbjct: 307 VKRRRENADRDYPSIISEIALYLSAGVTVKNALERISAAYEERRKQGQTGHEGYEALSLL 366

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114
           +     G+S  ++        P       S ++    Q G   L+E      +   +   
Sbjct: 367 VRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNLQRGNRRLAELFEEEKQRAEEAGR 426

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++ K        +    +I  +      L+   +P     L
Sbjct: 427 LRCKKLGDEASTRL---LIPMVGLLAVVLMILLAPALFMHL 464


>gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304]
 gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 614

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 68/180 (37%), Gaps = 7/180 (3%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHL-GLS 64
           R  K     P+A+++++   + G+P+      +    +    +  EF +++    + G  
Sbjct: 118 RRGKIDSSLPHAVNMMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIFGYD 177

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++  +    P +++  F        + GG++ E L   S  L   +     +   ++
Sbjct: 178 MITAMKYVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETL 237

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  A  ++   +   +  L+       +  ++          V  A + +G +++  +I 
Sbjct: 238 QVYAEIYLALFIVAPLFFLIVLV----VFQMVGSGAMQTFKIVLFAMIPLGSLLLMWLIK 293



 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 6/155 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +   K   + P  +  +     AGL V +A+  +       +  E R++      G  
Sbjct: 400 KNRLLTKMEKELPEFMKQLASLNEAGLNVVEALRHLSESELGVLGREIRKIKREVEWGEL 459

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           ++ ++ ++   +  Q V+   T++    +   ++ +AL   S        ++ +++    
Sbjct: 460 ITSALEKIESRVRSQIVAKAITLLVKAIESTPSIRDALNTASMYSELEVEVRDRIK---- 515

Query: 125 EAKASAW-IIGSLPFCVSTLVYFTSPGYMNVLIND 158
            A+ S + II  L F V     +     M  +   
Sbjct: 516 -AQMSMYTIIIYLAFAVFLYTAYILIQNMLTVFAS 549


>gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 247

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           + R    L   P  LD+I  +  AG P+  A   +   + +P  S  R V     +G S 
Sbjct: 98  RARREALLGQQPEVLDLIAAAQEAGSPLRRAAGEVAALAPEPSASVLREVDAHLRVGFSE 157

Query: 66  SESISRMVRYMPLQEVSFFSTV--ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +E+   +       +  + ST   ++  ++ G  +++ +   +   R+        +A +
Sbjct: 158 AEAWQSLAD-----DPVWGSTARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKART 212

Query: 124 MEAKASAWIIGS-LPFCVSTLVYFTS 148
           +  K+   ++   LP  +   V    
Sbjct: 213 VAVKSVGPMMACFLPAFILAGVVPIF 238


>gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 344

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 47/121 (38%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           + + I  R  K      +   I   ++R+G+ +  ++ +           + + +     
Sbjct: 81  INYKIDDRKTKMEGMLSDYFQIASANLRSGIAMDRSLLLAARPEFKFFADDIKEMNRQIF 140

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++   +  +        +     ++    + GG +++ L  LS+ +R+++ M+ +V 
Sbjct: 141 SGQTMESGLKYLAGRYKSFTLDHAIRMMIEAQRYGGAMADLLDQLSKDIRNQQLMQKEVA 200

Query: 121 A 121
            
Sbjct: 201 G 201


>gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 545

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 73/186 (39%), Gaps = 10/186 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ------SSDPVRSEFRRVIE 57
           L  +R   +   F + L I+   +  G+  ++A    +        + + +  +      
Sbjct: 62  LASRRARLYRLIFGHFLQIMSAELTGGMTFTNAFTGAIADLVLITGTRNRLMQQLCNASG 121

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                L  ++ +  +      +E      + S+Q +  GN++      + ++ D  + +A
Sbjct: 122 MLAAHLPAAQVLDELSNQSVCREAKPILKIFSLQLRNNGNMNNLCKFATTMVNDLNDTEA 181

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML----LGVAAAFML 173
           ++ A S +    A+I+ ++P+ +S ++ F++  Y         G ++    L VA     
Sbjct: 182 QITADSNKQTVEAFIMAAMPYIMSAILQFSAGSYYAQASITTLGRVMKLASLFVAVTASA 241

Query: 174 IGIMVM 179
           +   ++
Sbjct: 242 LTFYIV 247


>gi|256389283|ref|YP_003110847.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
 gi|256355509|gb|ACU69006.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
          Length = 270

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++R  + +         I   + AG    +A+      +   +      ++     G  
Sbjct: 93  VERRQTEII----ELCVTICSELHAGREAREALRDAAVGACPDLAV---HLVGPLGTGDD 145

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +   +         + ++  +    V  + G  ++ A+  LS  LR  +  + ++ A   
Sbjct: 146 VVTVLRTAAGTPGREALAALAACWQVA-EGGAGMTAAIGELSDGLRAERAQRRELDAELA 204

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + SA ++  LP     +        + +L++   G   L +  AF+L G+M M  +  
Sbjct: 205 GIRTSARLLAMLPVVGLIIGSGMGLSPIPMLLHTGVGETCLVLGIAFVLGGVMWMDRIAR 264


>gi|326943573|gb|AEA19466.1| membrane protein, putative [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 310

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 309

 Score = 51.6 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMPLQEVSFFSTVISVQ 91
           +  AV   +   + PV S F+  +    L    ++ ++  +   +       +   + + 
Sbjct: 152 ILTAVDENLPYLNPPVLSVFKGFVSRVRLVDPDVTAALHDLKDRIDNAVYVEWCDAL-IA 210

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            Q   +L   L  +   L D + +  +++ +  E +    I+  L      L+YF +  +
Sbjct: 211 CQHDRSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMQVLVVGNIPLMYFLNKDW 270

Query: 152 MNVLINDPRGHMLLGVAAAFMLIG-IMVMR 180
            + L++ P G ++L + AA + +    V++
Sbjct: 271 YHTLMHTPLGQIILTICAAVIFVSTAFVIK 300


>gi|225871556|ref|YP_002752914.1| hypothetical protein BCA_A0067 [Bacillus cereus 03BB102]
 gi|225785496|gb|ACO25714.1| putative membrane protein [Bacillus cereus 03BB102]
          Length = 310

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
 gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
          Length = 300

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%)

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           + V +V + +G  L++ L  +   LR+ +++   V+    E  A+A ++  LP     L 
Sbjct: 74  AAVWAVATSVGAPLADTLREVGTSLREARDIADDVRVALAEPAATARLLAGLPLVGVPLG 133

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                  + VL  DP G + L    A +++  +  R +  
Sbjct: 134 AVLGFDTVRVLTADPVGRLCLAAGLALVVMARVWSRRLAR 173


>gi|228925184|ref|ZP_04088294.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834523|gb|EEM80052.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 292

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 97  RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 156

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 157 LLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYL 216

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 217 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 267


>gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
 gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
          Length = 401

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              +RAG+PV +A  ++  Q+   P++    +V E    G++ S++  +  +  PL    
Sbjct: 72  ATLIRAGVPVVEATHILGEQTRSKPLKRALMQVEEDIRNGMAFSDAAGKHPKVFPL---- 127

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVS 141
            F  ++    +  GN+ + L  L+  L  + N+K K+Q A++  A  S   +    F + 
Sbjct: 128 LFVNMMR-AGEATGNVDDTLDRLASTLEKQYNIKKKIQSAMTYPAILSLLTLVVGMFLMV 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +V    P +M+          L+ V   
Sbjct: 187 FIV----PTFMDAFKEMNLEMPLITVIVV 211


>gi|271962054|ref|YP_003336250.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505229|gb|ACZ83507.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 234

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 4/184 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQ 59
           +    KRTA +          +   + AG    +A+A  V   +  DPV    R +I   
Sbjct: 47  RSRPSKRTAAWRIASIELCQGLAAELAAGRTAGEALARAVSTVEFPDPVA--LRPLIAAA 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  +  ++         +  S  +    V    G  LS  +  ++  LR+ +  +  V
Sbjct: 105 RDGGDVPAALLAAAPEQGGEAFSRLAACWKVSVTAGAGLSVLVDRVAGSLREAQAHRQDV 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A     +A+A ++  LP     +        ++ L   P G   L +       G+   
Sbjct: 165 AAQLAGPRATARLLAGLPALGLLMAMGLGMRPLHFLFGSPAGVGCLALGLVLDGCGLWWT 224

Query: 180 RLMI 183
             ++
Sbjct: 225 HRLV 228


>gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 261

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH- 60
           HL+  R + F ++F   L +++    AG+P+   +A +   ++   +  EF  V      
Sbjct: 69  HLVSARRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAEVEADKYIAREFALVTREVVV 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G + +E++      +P Q       +++  S++   + E L      +   K +KA+  
Sbjct: 129 MGATPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQSL 188

Query: 121 ALSMEAKASAWIIGSL--PFCVSTLVYFTSP-GYMNV--LINDPRGHMLLGVAAAFMLIG 175
             S+      +++ ++  P  V+ L    SP G + V     DP   + L       L+G
Sbjct: 189 VRSLALLFEIYVVAAMLLPILVAILALALSPLGALEVAGFALDPVTLIALTGLIYSPLVG 248

Query: 176 IMV 178
            + 
Sbjct: 249 AVF 251


>gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
 gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
          Length = 305

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 8/182 (4%)

Query: 9   TAKFLDDFPNALDI---IVRSVRAGLPVSDA-VAVIVGQSSDPVRSEFRRVIETQHLGLS 64
             +     P    +   +   + AGL  S A   V  G+S+D V +      E    G +
Sbjct: 1   MKRARSQLPEVASVTQRLAVLLNAGLTPSSAWFHVARGRSADGVAALVALAGEE--PGGA 58

Query: 65  LSESISRMVRYMPL--QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
               +       PL  Q  +  +    V  Q+G  L+ AL   +R LR   +++ +V   
Sbjct: 59  AERIVRAAEGLAPLDRQAWNSLAAAWFVAGQVGAPLAAALRTHARALRMLVHVQREVATA 118

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                A+A ++ +LP              + VL++ P G   L V  A +   +   R +
Sbjct: 119 LAAPVATARMVLALPAIGLVFGALLGFDTIGVLVSTPIGWGCLVVGGALIAAAVRWNRRL 178

Query: 183 IN 184
           + 
Sbjct: 179 VR 180


>gi|222832288|gb|EEE70765.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 51.2 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+A +  ++ DP +      +    + G + + ++++  R     E 
Sbjct: 1   MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 55

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L  R+ +++K+      A   A +       V 
Sbjct: 56  SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIG---AALYPAIVTLVAIVIVL 112

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P   +V     R    L VA  
Sbjct: 113 FLVSYVVPQVASVFAGTKRALPWLTVAML 141


>gi|196048264|ref|ZP_03115441.1| membrane protein, putative [Bacillus cereus 03BB108]
 gi|196021001|gb|EDX59731.1| membrane protein, putative [Bacillus cereus 03BB108]
          Length = 310

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|190015191|ref|YP_001966619.1| conserved hypothetical protein [Bacillus cereus]
 gi|190015456|ref|YP_001966945.1| hypothetical protein pPER272_0074 [Bacillus cereus]
 gi|190015631|ref|YP_001967247.1| hypothetical protein BcAH187_pCER270_0104 [Bacillus cereus]
 gi|217956757|ref|YP_002335851.1| hypothetical protein BCAH187_C0115 [Bacillus cereus AH187]
 gi|218848445|ref|YP_002454971.1| hypothetical protein BCAH820_B0087 [Bacillus cereus AH820]
 gi|116584538|gb|ABK00655.1| putative membrane protein [Bacillus cereus]
 gi|116584867|gb|ABK00982.1| conserved hypothetical protein [Bacillus cereus]
 gi|116585137|gb|ABK01246.1| conserved hypothetical protein [Bacillus cereus]
 gi|217068585|gb|ACJ82833.1| putative membrane protein [Bacillus cereus AH187]
 gi|218540496|gb|ACK92892.1| membrane protein, putative [Bacillus cereus AH820]
          Length = 310

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|44004390|ref|NP_982058.1| membrane protein, putative [Bacillus cereus ATCC 10987]
 gi|42741456|gb|AAS44901.1| conserved membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 310

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
 gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
          Length = 415

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
           AL  +   ++AG+ + DA+  I   S+DP+  E F    E    G SLS+  +    Y+ 
Sbjct: 77  ALRQLSVLIKAGISLKDALEDIGENSADPLIKEVFLNAAEAIDSGKSLSDVFAEYEEYLG 136

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  S  +    +  G+L+ A+  L++I  +    + K+       +     + ++ 
Sbjct: 137 -----GLSLAMVRLGEKTGDLAMAIDYLAQIYENMYENRRKMIKAL---RYPIITLIAIV 188

Query: 138 FCVSTLVYFTSPGYMNVL 155
                L+    P +  + 
Sbjct: 189 VAFVFLILLVVPKFKAIF 206



 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   +++G+P+ DA+ +  G  S+ V  E  + +I   + G +L+E ++       
Sbjct: 281 FLQTLSSLIKSGIPLLDALKISEGIVSNEVIKEKIKEIIRGINQGRNLAEMMNE------ 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
            + ++F +  +    +  G L   L   ++   DR  
Sbjct: 335 TKLLNFIALRMISAGEESGELDSMLEKAAKYYEDRFQ 371


>gi|258511183|ref|YP_003184617.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477909|gb|ACV58228.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 293

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSLSE 67
           A F      A+ I + ++RA   +  A   +   + D  +++EF  + +T   L ++  +
Sbjct: 118 ALFDAILREAMPIAITTLRATNRLEAAFEDVARIARDKRLKTEFDMLAKTWRGLRVTPEQ 177

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++        ++E+   +      ++   +L+E        +   ++ + K++A ++  +
Sbjct: 178 ALMLAASRWEIEEIVQLAKATEEATKYHADLAELWLKYREQIERDEDKRRKLRAKTLAGR 237

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            +  I   +   +  L Y     YM      P  H+   V    ML    V+  
Sbjct: 238 RNGLIYAGIVVSMFGLAYPRVQRYM-----TPLAHIGFWVVLLIMLTCTWVIWR 286


>gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 237

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
             D P A D++   + AGLPV  A+A +    + P+  E   V     LG +   + + +
Sbjct: 97  EADLPVACDLLAVCLEAGLPVGGALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAWADV 156

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                  E++    V+    + G  +  AL +L+   R     + + +A +   +A  W+
Sbjct: 157 P-----AELAVLGRVLVRAGESGSTVVPALRSLAGDAR----AEQRSRADAAVRRAGVWV 207

Query: 133 IGSLPFCVSTLVY 145
           +  L  C      
Sbjct: 208 LAPLGVCFLPAFL 220


>gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas
           maltophilia K279a]
          Length = 311

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIE 57
           +   +K+R     ++ P  +D++      G  +  ++  +  +  D +     E +    
Sbjct: 147 LSSWVKRRRRAVDNELPLLIDLLRLLQGVGFSMDQSLQTLGDKLRDALPVLGGELQEANV 206

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G + ++S+ R+       +++    +I      GG + E L   S  LR+++    
Sbjct: 207 AYTHGRTRAQSLRRLSEVYADDDLTSLMQLILQVHAHGGAVQEPLRQFSIRLREQRRNTL 266

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLV 144
           K +   +  K +  ++ +L   +  ++
Sbjct: 267 KEKVGKLSVKMTVVMMLTLLPALMLVL 293


>gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 307

 Score = 51.2 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 6/177 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL- 61
           L   R        P A++ I     AG+  ++   ++   +       E R +     + 
Sbjct: 122 LAGDRRRNIDSTLPYAINYITAMSTAGITPAEVFRLLGNSEIYGESAVEARYITREIDVF 181

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LRDRKNMKA--- 117
           G  L +++    +Y P   +  F          G NL+E   N S   +++ +  +    
Sbjct: 182 GKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTFL 241

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +   L  E+  +A + G+L   +   +  T     + +      + ++ + +   +I
Sbjct: 242 ETLGLISESYVTALVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVI 298


>gi|307328262|ref|ZP_07607440.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886096|gb|EFN17104.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 308

 Score = 50.8 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 3/167 (1%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +   ++   +RAG    +A+  +       +R  +  V      G  + +++ R+ R   
Sbjct: 132 DLCAVVAGELRAGRHPGEALLAV---DPGHLRERWGLVTAAARFGGEVPDALRRVARLPG 188

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            + ++  +    V    G  L+  L  ++  LR  ++ +  + A    AKA+A  +  LP
Sbjct: 189 AEGLTGVAACWQVAVDEGAGLAAGLDRVAAALRAERDQRDSLDAKLAGAKATAAALAVLP 248

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        ++ L++ P G   L V       G++    M+ 
Sbjct: 249 VVGLVLGGLLGSNPLHELLHTPAGLSCLLVGGLLEWTGLVWTGRMVR 295


>gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR]
 gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR]
          Length = 303

 Score = 50.8 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 3   HLIKKR----TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
            ++KKR      + + D P  +D +  S+ +G     A+  +   S   +     R+I  
Sbjct: 144 QMVKKRFKAWQNEVVKDIPELIDKMRISLASGKDYLSALKKVQENSGPRLSKIVERLIND 203

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA-LANLSRILRDRKNMKA 117
             +    ++++    +   L  +  F   + V  ++G   +E+  AN+   +RD + +  
Sbjct: 204 MQIMRP-TQALDEFAQAFGLPVMVKFVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSL 262

Query: 118 KVQALSMEAKA 128
           +    +   K 
Sbjct: 263 EELTKNKPEKV 273


>gi|229020884|ref|ZP_04177583.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
 gi|229027756|ref|ZP_04183937.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
 gi|229035194|ref|ZP_04189130.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
 gi|228728086|gb|EEL79126.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
 gi|228733548|gb|EEL84351.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
 gi|228740416|gb|EEL90715.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
          Length = 307

 Score = 50.8 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 112 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 172 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 231

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 282


>gi|208702094|ref|YP_002267400.1| hypothetical protein BCH308197_A0145 [Bacillus cereus H3081.97]
 gi|208657949|gb|ACI30319.1| membrane protein, putative [Bacillus cereus H3081.97]
          Length = 310

 Score = 50.8 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           + L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR]
 gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR]
          Length = 290

 Score = 50.8 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 65/176 (36%), Gaps = 2/176 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+     +   P+   I++  +     +  A  +      +P+++  +  ++   
Sbjct: 99  VQRYKKRERMALMVAIPDFARILIARLVDHHSIVKAFEMTQKDCFEPMKTLAQEFVKDVG 158

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALANLSRILRDRKNMKAK 118
           +G+ +  ++  +   +  ++ + F+  + +  Q G       A+      +         
Sbjct: 159 VGIGVQLALENLKVKVSYRKFNTFTETLLLAHQEGYSTEALAAMKKAVESIESDIKAIEA 218

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +Q  + + K   + +    +    ++ F +    N+ ++   G +L+ +     ++
Sbjct: 219 LQITTRKKKRELFSVVIASWLFPVVLSFMNTDNTNIFLDTFSGKVLIFLYIISTMV 274


>gi|229194287|ref|ZP_04321126.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
 gi|228589186|gb|EEK47166.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
          Length = 292

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 2/169 (1%)

Query: 1   MKHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           + +  KKR    + D     +  +  +++        +  +     + ++ E  +V    
Sbjct: 99  LLYQRKKRYYLIVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLL 158

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAK 118
             G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   A+
Sbjct: 159 EGGTTMHRAFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLAR 218

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           +++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 219 LRSSLSQAQRAFVQNCLIVIAMPIVIVLMSKEAYGFLAGSMMGKIALAV 267


>gi|182437112|ref|YP_001824831.1| hypothetical protein SGR_3319 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465628|dbj|BAG20148.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 307

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS---DP---------VRSEFRRVIETQHLGLSLSESIS 70
           +V  +RAG     A+   + +     DP         +      V+     G  +  ++ 
Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      L+ +S  +    V    G  L+  L  L   LR+ +  + +++A    A ++ 
Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     L        + VL++ P G   L V       G+     ++ 
Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLACLAVGVFLEAAGLYWACRIVR 302


>gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2]
 gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 286

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVR 74
               ++   + AGL +  A  V   QS   +        R       G     ++  +  
Sbjct: 143 EFAQLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDEIGE 202

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +  +   + ++     LGG +SE++  L    +D +  + K +   + AK +  ++ 
Sbjct: 203 GKQIPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVAMMI 262

Query: 135 SLPFCVSTLV 144
            +   +  +V
Sbjct: 263 FMMPALFIIV 272


>gi|297529209|ref|YP_003670484.1| type II secretion system F domain protein [Geobacillus sp. C56-T3]
 gi|297252461|gb|ADI25907.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3]
          Length = 403

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      VRAG+ + D++ ++  Q+   P+      + ++   G  LS + +   R  P
Sbjct: 68  FLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANHPRIFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F  ++    +  G L E L  L+         + K+ +      A A I  ++ 
Sbjct: 128 ----PLFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAIIATAVV 182

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T        
Sbjct: 183 IFLLVAVVPTFVEMFAEF 200


>gi|261418357|ref|YP_003252039.1| type II secretion system protein F [Geobacillus sp. Y412MC61]
 gi|319767684|ref|YP_004133185.1| type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
 gi|261374814|gb|ACX77557.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC61]
 gi|317112550|gb|ADU95042.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
          Length = 403

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      VRAG+ + D++ ++  Q+   P+      + ++   G  LS + +   R  P
Sbjct: 68  FLRQFATLVRAGVTIVDSIRILAEQTESKPLAKTLLDIEQSLRSGNPLSAAAANHPRIFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F  ++    +  G L E L  L+         + K+ +      A A I  ++ 
Sbjct: 128 ----PLFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIASALAYPIAVAIIATAVV 182

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   V  T        
Sbjct: 183 IFLLVAVVPTFVEMFAEF 200


>gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [Mycobacterium abscessus ATCC 19977]
 gi|169239542|emb|CAM60570.1| Conserved hypothetical transmembrane protein [Mycobacterium
           abscessus]
          Length = 258

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 4/160 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI-SRMVRYMPL 78
           LD++V  +R G     A  +   + +      F  +     LG+++  ++   +      
Sbjct: 92  LDVVVGELRVGAHPVRAFEIAAVELNGAAGEAFAAIAARARLGVNVDRALPRSVPARAQW 151

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +   S+  + G  +++ L      L++R+   A+V A     +A+A ++  LP 
Sbjct: 152 NRI---TRSWSLAQRHGLAVADLLDACRADLQERQQFTARVNAGLAGPRATAVVLTGLPV 208

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               L        ++VL     G  LL V       G++ 
Sbjct: 209 AGIGLGQMIGARPLSVLCAGGVGGALLVVGVTLACAGLLW 248


>gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1]
 gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1]
          Length = 307

 Score = 50.8 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65
           R        P A++ +     AG+   +   ++           E R +       G  L
Sbjct: 126 RRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQSTIYGESAVEARYISRETDFFGKDL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR--ILRDRKNMKA--KVQA 121
            +++  + +  P + +  F          G NL+E   N +    L + +  K+  +   
Sbjct: 186 LDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLG 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG-------YMNVLINDPRGHMLLGVAAAFML 173
           L  E+  +A + G L   +   V     G       Y+ + +  P G M+  V  + M 
Sbjct: 246 LIAESYVTAMVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVVLISSMT 304


>gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 450

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L K+ T K  + +   L  +   +R GL    AV  +       +    R    +   G 
Sbjct: 126 LQKRSTRKKEELYTEFLFKLSELMRGGLDPVKAVKELAKTDLGVLTPHIRIASTSMTFGK 185

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S  ES+  M + +    +  ++ ++   S  GG++++ +   S  +R   +++ + +   
Sbjct: 186 SFEESMKAMAQSLHSDLIRRYTMLVVQASYSGGSVADLILKASEDMRSIISIEREKEGNL 245

Query: 124 MEAKASAWIIGSLPFCVSTLV 144
            +     +   ++   +  ++
Sbjct: 246 HQYVMIFYFAQAIIIFIVYIL 266


>gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 240

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D P+ +D+   ++R G   +D +A++      P       V     LGL   +  S +  
Sbjct: 100 DLPHVVDLFAATLRGGAAPADGIALVCTALPGPAADRLAGVAARLALGLDPGQVWSALAD 159

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
                 +      ++     G  +  A+  L+  L      + + +A ++  KA+  + +
Sbjct: 160 ---DPHLGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALPLGL 216

Query: 134 GSLPFCVSTLV 144
             LP  V   +
Sbjct: 217 CLLPAFVLIGI 227


>gi|158333616|ref|YP_001514788.1| type II secretion system domain-containing protein/ pilin
           biogenesis protein PilC [Acaryochloris marina MBIC11017]
 gi|158303857|gb|ABW25474.1| type II secretion system domain protein/ pilin biogenesis protein
           PilC [Acaryochloris marina MBIC11017]
          Length = 406

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 13/159 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ +  K  A F   F          V AG+ +   + V+  Q  +P ++     V    
Sbjct: 59  LQSITVKDKALFSRQF-------SALVNAGVALVRGLGVMSEQCKNPKLKKALLDVNAAV 111

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+SLS+++                  +    + GG L E L  L+ +L D+  +K ++
Sbjct: 112 QQGVSLSDAM-----RGHPAAFDQLYVAMIQAGETGGVLDEVLNRLATLLEDQARLKNQI 166

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           ++         +I  S+   +   +     G  + L  D
Sbjct: 167 RSALAYPVVVGFIAVSIFLGMVIFLIPVFDGIFSQLGGD 205


>gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris
           28-1]
 gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris
           28-1]
 gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
 gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 386

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +       +V +++G  L+E L  ++  +  +    AK  A  +  +A+A ++G LP   
Sbjct: 136 LRAMFIATAVSTEVGAPLAEILTRVADGIAAQLEAGAKRHAAQVGPRATARLLGVLPLAA 195

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  F     + + ++      +  V A  M++G +    MI 
Sbjct: 196 LVMASFIGVDVLGMALSGGLNTGIFVVGAVLMVVGNLWSHAMIR 239


>gi|311899776|dbj|BAJ32184.1| hypothetical protein KSE_64250 [Kitasatospora setae KM-6054]
          Length = 323

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 63/178 (35%), Gaps = 3/178 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R  + L+        +   +  G+ ++ A+      +   + +E   +           +
Sbjct: 106 RRIERLEALAEWTQRLADVLLLGVGLNQAIMTSRRTAPAALETEITDLAARLQSRWRPED 165

Query: 68  SISRMVRYM-PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++      +         + ++      G  L+ ALA+++  +R+    +  ++A   + 
Sbjct: 166 ALRAFGDQVADSTADKVLAALVLRAGDSGPGLARALADMAESVREEVRQRRAIEADRSKH 225

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           + +   +  +   V  +  F + GY         G ++LG+ A   +  I  MR +  
Sbjct: 226 RTTIRWMVGIILLVVVVGSF-NAGYTAP-YTTTIGQLVLGIVAVAFVAVIAWMRSLAR 281


>gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4]
          Length = 403

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + AG+ V DA  ++  Q+   P+R     V +    G  +S+++S+  +   
Sbjct: 67  FLRQFATLLEAGVTVVDATKILSEQTESKPLRKALIEVEKEIRDGNPISDALSQHKKIFE 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                 F  ++    +  G+L E L  L+     +   K K+ +          I   + 
Sbjct: 127 ----PMFVNMMR-AGEATGSLDETLNMLAVHYEKQYQTKQKIVSALAYPAVVGLIAIGVV 181

Query: 138 FCVSTLVYFTSPGYMNVLIND---------------PRGHMLLGVAAAFMLIGIMVMRL 181
             +   V  T  G  +    D                +   L+      + IG + +R 
Sbjct: 182 IFLLVAVVPTFVGMFDDFGGDLPAITKFVIGSSEWMQKYWYLVVAFMILLAIGFVFLRQ 240


>gi|225351276|ref|ZP_03742299.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158732|gb|EEG71974.1| hypothetical protein BIFPSEUDO_02868 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 252

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 11/165 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR--RVIETQHLGLSLSESISRMVRYMPLQ 79
           +  SVR+G  +  A   + G    P  + E    R+           E   ++ R     
Sbjct: 88  LRASVRSGATLVQAFEELGGT---PFATPELTRLRITMVIRSRCPPKEQCGQVERLSG-- 142

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+        +   LG      L  ++  L+ ++ +           KA+  ++ +LP  
Sbjct: 143 ELY---AACQLSLTLGCETGRCLQAVAESLKRQRLLDDLRTNAFAMPKATVKLLMALPLL 199

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L++  +G   LG A      G++ +R ++ 
Sbjct: 200 TVLLGEGMGAHSLAFLVSGVKGLACLGFALCCYTFGLIWIRALMR 244


>gi|220915777|ref|YP_002491081.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953631|gb|ACL64015.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 417

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 23/156 (14%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSE 67
           F   F   +D       AGLP+  A+ +I  Q+ +P   EFRRV+ T  +    G + ++
Sbjct: 83  FTRQFSVMID-------AGLPLVQALDIIATQADNP---EFRRVLSTVKVKVESGSTFAD 132

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +         F  ++    ++GG L   L  L   +   + +  +V+       
Sbjct: 133 ALGEHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMV 184

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
             A ++      V+ L+ F  P     +  D  G M
Sbjct: 185 YPAIVLTVAVGVVAVLIAFVVPT-FEKMFKDFGGAM 219


>gi|229113406|ref|ZP_04242857.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15]
 gi|229164943|ref|ZP_04292758.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803]
 gi|228618527|gb|EEK75538.1| hypothetical protein bcere0009_56160 [Bacillus cereus R309803]
 gi|228670020|gb|EEL25412.1| hypothetical protein bcere0018_55790 [Bacillus cereus Rock1-15]
          Length = 307

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           K L+ +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 112 KFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 171

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 172 LLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGSNSVQVLLDIAEDFEKQKLYL 231

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      +     G + L V
Sbjct: 232 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFVAGSMMGKIALAV 282


>gi|326777722|ref|ZP_08236987.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658055|gb|EGE42901.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 307

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS---DP---------VRSEFRRVIETQHLGLSLSESIS 70
           +V  +RAG     A+   + +     DP         +      V+     G  +  ++ 
Sbjct: 129 VVGELRAGREPGQALLAALRERPAGADPSATPTSGGRLGDAEAAVLAAARFGGDVPAALR 188

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      L+ +S  +    V    G  L+  L  L   LR+ +  + +++A    A ++ 
Sbjct: 189 QAAEAPGLEGLSGMAACWRVAVDGGAGLATGLERLEAALREDRRRREELRAHLAGAWSTV 248

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     L        + VL++ P G   L V       G+     ++ 
Sbjct: 249 VVLALLPCAGLGLGAALGAEPLRVLLHTPGGLTCLAVGVFLEAAGLYWACRIVR 302


>gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 4/151 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGL 63
            K+   +F       LD++    R+G  V  A+      +   V      V+      G 
Sbjct: 150 AKQARGQFRRALALYLDLVAVERRSGAGVRPAMEAAADVADSWVFRRLGEVLRRTQWSGQ 209

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
              +++ +M   + L E+  F+ ++ + +  G    + L   S  LR     +    A +
Sbjct: 210 PPWDALEQMADELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSEDLTAANN 269

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  + +   I S    V  +    +P  + +
Sbjct: 270 IGERMA---IPSSLLGVIFMALLIAPAVLRM 297


>gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 422

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGLP+  A++ +  ++  P  R     +    + G  L  ++++  +     E 
Sbjct: 92  LAGLVSAGLPLERALSSLAEEAETPAQRDVVATIRSEVNGGKPLGTALAQHPK-----EF 146

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L   L  L+  L +++N+ +K+   ++     + +   +   + 
Sbjct: 147 SDIYVAVVSAGEQSGQLGLVLERLADDLEEQQNLSSKLMGAALYPAIVSVVALVIVLFLL 206

Query: 142 TLV 144
             V
Sbjct: 207 AYV 209


>gi|152991304|ref|YP_001357026.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
 gi|151423165|dbj|BAF70669.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
          Length = 412

 Score = 50.5 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           LD +   + AGLP++ ++   V    DP +++ F +++E    G+SL  S+ R  R +  
Sbjct: 78  LDQLAIMLDAGLPLNFSLEETVKNEKDPMLKAIFTQILEDIESGMSLYASVERFKRQLGT 137

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +S F     +  + G  L+E +A+LS+I ++  + + K +  +   +   +II ++  
Sbjct: 138 LSLSLF----RLGEETG-TLAEQIAHLSQIYQEILDNRRKFRKAT---RYPIFIIVAMSI 189

Query: 139 CVSTLVYFTSPGYMNVL 155
             + +     P +    
Sbjct: 190 AFAIVTILVIPQFEEFF 206


>gi|258510601|ref|YP_003184035.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477327|gb|ACV57646.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 288

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 14/165 (8%)

Query: 26  SVRAGLPVSDA-------VAVIVGQSSDP-VRSEFRRVIETQH-LGLSLSESISRMVRYM 76
           ++  GL V +A       V  I+  S DP +R EF  +      LG+   +++       
Sbjct: 126 ALPLGLSVLEATEDVGLAVEDILRHSKDPVIRREFETIRARIAALGVPPEDALVEHAMQS 185

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +    + +       + G N S    ++   L+D+   ++ ++A +   +  A++ G+ 
Sbjct: 186 GVPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                   Y      +   +        L   A  + +GI  M  
Sbjct: 246 GLFGLMAFYHAYAQSLIGFV-----PWALLAWAVLVGVGIYRMAK 285


>gi|188997645|ref|YP_001931896.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932712|gb|ACD67342.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 406

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 19/183 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +D       +   + AG+ ++ A+ ++  Q  +P ++     V +    G+SLS+S+ +
Sbjct: 67  EEDLAIFARQLGAMIGAGIGIAQALEILSEQMPNPTLKEALINVKDDVITGMSLSKSMQK 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P     F   +I+   + G  L E L   +        ++ K+ + S      A 
Sbjct: 127 HPKVFP----PFLINLIAAAEESG-KLDEILKRATIYYEKLAAIRRKIISASW---YPAA 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----------AFMLIGIMVMRL 181
           ++      V  L+ F  P +  +  +      LL                 +IG  V+ +
Sbjct: 179 VVIIATVIVLGLLTFVVPTFAEIYASFGGELPLLTQILINISNSLKENILYVIGFFVIFV 238

Query: 182 MIN 184
           ++N
Sbjct: 239 IMN 241


>gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1]
 gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain
           [Arthrobacter aurescens TC1]
          Length = 305

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   + AG  +  A+ +I   +S P+R   R V+    +G     +  R     P 
Sbjct: 170 MLELVASMLDAGAGIGRALELIAKCASPPIRQSLRPVVAALAIGADWETA-WRTPTRQP- 227

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW-IIGSLP 137
            EV      ++  +  G   +  L   +   R+R+         + E +A+A  +   +P
Sbjct: 228 PEVVRLKDALAFAALTGAPSASILYAQAA--RERREQFR-----AAEKRAAALGVKLVVP 280

Query: 138 FCVSTLVYFTSPGYMNVLI 156
             + +L  F   G + VLI
Sbjct: 281 LGLCSLPAFICLGIVPVLI 299


>gi|260905508|ref|ZP_05913830.1| hypothetical protein BlinB_09270 [Brevibacterium linens BL2]
          Length = 225

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 13/170 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A++     ++ G+     +A +  Q++         +     LG     +I+     +P 
Sbjct: 59  AVENCAHLLKVGMTPQAVMATLSRQNAQ-----LAPISRAISLGEEPGRAIATRGAELPG 113

Query: 79  QEVSFFS---TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                F+   +V +V  + G   ++ +   +R  R   +   +        KA+  ++  
Sbjct: 114 AAAEVFAGMSSVWTVSERSGAPAADMILRYARAQRSALDADRERHIAMAGPKATVRVLSW 173

Query: 136 LPFCV--STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           LP       L+    P     L +   G + +G      L+G   MR M+
Sbjct: 174 LPLIGVGLGLLIGVKPA---ELFSGLPGQLSIGGGIVLYLLGRWWMRRMM 220


>gi|228912577|ref|ZP_04076239.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
           200]
 gi|228847046|gb|EEM92038.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
           200]
          Length = 307

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +     + ++ E  +V      G ++  +          +E+ 
Sbjct: 137 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNETFNFRELV 196

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 197 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 256

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++   S      L     G + L V
Sbjct: 257 IVIMLMSKEAYGFLAGSMMGKIALAV 282


>gi|229182302|ref|ZP_04309577.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W]
 gi|228601158|gb|EEK58704.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W]
          Length = 307

 Score = 50.1 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +     + ++ E  +V      G ++  +          +E+ 
Sbjct: 137 VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFREFNETFNFRELV 196

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 197 FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 256

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++   S      L     G + L V
Sbjct: 257 IVIMLMSKEAYGFLAGSMMGKIALAV 282


>gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 255

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  + K R  KF  + P  +D+      A +P+ D   +    +    VR+   ++    
Sbjct: 97  ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 156

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +      ++ R +  + L E +  +  +    + G  L E L+ LS  L +    K   
Sbjct: 157 IMTKEKEVALKRFINEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIAR 215

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q  SME K  A +   +   V+  +Y
Sbjct: 216 QDKSMEYKVLAAVFFLMASIVTLYIY 241


>gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus
           obeum A2-162]
          Length = 341

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-------SSDPVRSEFRRVIETQ 59
           KR  + L D+P+ +      ++AG+        +          +          +    
Sbjct: 187 KRAEQLLMDYPSLIMKFTLLIQAGMTARKVFQKMSADYMRNRSKTGRYAYEAITIMCHEM 246

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMKAK 118
             G++  E+  R        +   FST++    Q G   +++ L   +    D +  KA+
Sbjct: 247 DSGVAEMEAYRRFGERCGQMKYKTFSTILIQNLQKGSHRMADLLEKEALEAWDERKRKAR 306

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V   +   K    +I  L   ++ ++    P +++  
Sbjct: 307 VLGETAATKLLVPMIMMLAVVMAIIMI---PAFLSFY 340


>gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 295

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHL 61
            ++R  +   +    + ++      GL V  A+ V+  +       +  E R+V++    
Sbjct: 139 ARRRQQRIALEVSLMIPLLRILFETGLAVEQALRVLSQEGQALLPEISEELRQVLQRVDS 198

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           GL+L   + +  R + + E      ++      G    ++L  L  +L DR+  + + + 
Sbjct: 199 GLALGPELEKSARVLAVDEFIDTCVILQQLLVQGSGAMKSLLALKDLLDDRRLTRMQERV 258

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
             M AK SA ++  L    + L+    PG+
Sbjct: 259 SKMSAKMSAVMMVFL--FPALLIVLAGPGF 286


>gi|297543559|ref|YP_003675861.1| hypothetical protein Tmath_0063 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841334|gb|ADH59850.1| hypothetical protein Tmath_0063 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 297

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 6/153 (3%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           + +A+       S+P+RS  +R V   +   +S+ E +  M      +E   F     + 
Sbjct: 144 IINALKSTTPYISEPLRSIIKRNVFLYEKTQMSVDECLENMAAEAGNKEFRKFINFAKMN 203

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS--P 149
           ++ GGN ++AL  L       + + +     +  A   + +I  +      L+   S  P
Sbjct: 204 AKYGGNFNKALTKLREQ---GEKIFSLESIKAANASVGSMVILVMIVINLLLMMNISADP 260

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + ++ N   G  +    A  ++ G+ +++ +
Sbjct: 261 DIVYIVKNTITGQAIAISNAVSIVFGLYMIKNI 293


>gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 217

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 20  LDIIVRSVRAGLPVSD-AVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMVR 74
           LD+    V++GL  S  A AV   + S P    VRS +  V     +G+    +   +  
Sbjct: 77  LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 136

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +  L ++    TV     + G  L+EA   L+R LR R         LS+     A ++ 
Sbjct: 137 HPALGDL---VTVARASERSGATLAEACERLARQLRARA------SDLSLARAERAGVLI 187

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +LP  V  L  F   G   V+I+   G 
Sbjct: 188 ALPLTVCFLPAFFLLGLAPVVISLGIGI 215


>gi|171741513|ref|ZP_02917320.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC
           27678]
 gi|283455153|ref|YP_003359717.1| hypothetical protein BDP_0212 [Bifidobacterium dentium Bd1]
 gi|171277127|gb|EDT44788.1| hypothetical protein BIFDEN_00598 [Bifidobacterium dentium ATCC
           27678]
 gi|283101787|gb|ADB08893.1| hypothetical membrane-spanning protein, pilus assembly protein
           [Bifidobacterium dentium Bd1]
          Length = 270

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 11/165 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  SVR+G  +  A   + G    + +  RS    V           E   +M R     
Sbjct: 110 LQASVRSGATLVQAFEELGGYAFATPELTRSRIEMV---LRCRCPPEEQGGQMRRL--SA 164

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+        +   LG   S  LA +   L+ ++ ++   +      +A+  ++ +LP  
Sbjct: 165 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLEDLHRNAFAMPQATVKLLMALPLL 221

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266


>gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4]
 gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 194

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 33/151 (21%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------------SLS 66
           A D++   +RAGLPV+ A   +   +  P+    RR  +   LG               +
Sbjct: 54  AFDLLAACLRAGLPVATAAQAVARSAPAPLSESLRRAADLLALGADAATAWEAAASDPAT 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ES++RM R                 +  G +L+ ++  L+       + + +V+ L+  +
Sbjct: 114 ESLARMARR---------------SAASGSSLAGSMTELAA------DARTQVEHLASAS 152

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
              A ++ S P  +  L  F   G + V++ 
Sbjct: 153 AERAGVLISGPLGLCFLPAFICLGIIPVVVG 183


>gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
 gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
          Length = 408

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 75  YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   E     +        V +Q+G  L+E L  ++  +       AK     +  KA+
Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A ++G LP     +  F     +++         +  +    M+ G +    MI 
Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262


>gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836]
 gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836]
          Length = 306

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   ++R   F     + LD++  ++  G  + +A+            +  R+ +    
Sbjct: 152 LRQEAEERRRDFRHVVGSFLDLVAMNLAGGRGLPEALMTASTIGDHWAMARIRQALANAR 211

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L G++  ++++R+   + ++E+   ++ +++    G  +  +L   +  LR ++    + 
Sbjct: 212 LIGITPWDAMARLGDDLGVEELRDLASALALAGDEGAKIRASLLARAASLRRKELADVE- 270

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
                  ++ + ++  L  C + +++   P 
Sbjct: 271 --GKAGERSQSMLVAQLVMCAAFMLFLGYPA 299


>gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
 gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii
           DSM 5219]
          Length = 641

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 5   IKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           IK+R  +K   + P  L  +     AG+ +S A+ ++       +  E +++      G 
Sbjct: 422 IKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVSRSKIGVLNIEIKKMASHLSWGG 481

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +L E + +    +  +  S   T I   S+   ++   L   +     +  +K +    S
Sbjct: 482 NLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLNIAASEAEMQSQLKRE---RS 538

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            E     +I+         +VY  +  ++  +
Sbjct: 539 AEMTVYVFIVYVAFLVFLFIVYVLAAYFLPAV 570



 Score = 40.8 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 13/153 (8%)

Query: 30  GLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFST 86
           G+ + D    +  Q         EF  +I      G  +  ++       P ++   F  
Sbjct: 137 GMSLFDIFKSLSQQRHIYGVAADEFGYIIRDMEYFGYDMLTALKNANDNSPSEKYKNFLD 196

Query: 87  VISVQSQLGGNLSEALANLSRILR----DRKNMKAKVQALSMEAKASAWIIGSL-PFCVS 141
            +      GG+++  L N S   R      +    +  A+  E   + +++G +    + 
Sbjct: 197 GMLSIVSSGGDVTSYLKNKSEEYRFLASREQKTFLETLAILAEVYITVFVVGPIFLITIL 256

Query: 142 TLVYFTSPGYMNVLIND-----PRGHMLLGVAA 169
            ++ F     ++VL        P G +L  V  
Sbjct: 257 IVLGFMGSNSLDVLYTLVYVLIPIGTVLFIVFL 289


>gi|217967264|ref|YP_002352770.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
 gi|217336363|gb|ACK42156.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
          Length = 409

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F   ++       AGL +S  + ++  QS    +R   + +      G SLSE+ +
Sbjct: 75  FTRQFATMIN-------AGLSLSTCLNILSEQSESKALRQILKEIQRMVDEGSSLSEAFA 127

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +          S     +   ++  G L E L  L+  L  ++ ++ K+++         
Sbjct: 128 KFPNV-----FSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVL 182

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I     F + T +     G    +
Sbjct: 183 IIAIGAGFGMLTFLVPIFAGMFESM 207


>gi|91794691|ref|YP_564342.1| type II secretion system protein [Shewanella denitrificans OS217]
 gi|91716693|gb|ABE56619.1| type II secretion system protein [Shewanella denitrificans OS217]
          Length = 405

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +   V  E    ++E    G  LS ++++  +       
Sbjct: 73  MYSLTRSGIPILRAIAGLSESTHSKVMKEALEDILEQLTAGRPLSSAMNQYPKVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F ++I V  +  G L +    LS  +   +  + +++      +   +++G++   + 
Sbjct: 129 ALFVSMIHV-GENTGKLEDVFIQLSSYIEREQETRRRIK---SAMRYPMFVLGAIVIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P + ++ 
Sbjct: 185 ILNIMVIPKFADMF 198


>gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 600

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64
           R  +   D P AL  +  ++   + +      +         V  E   ++    + G  
Sbjct: 99  RKTRIDIDLPYALTYME-ALSTNVTLYSLFKSVFEAEDLYGEVSHECGMIVRDVEIFGED 157

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  ++  + +  P +  +     +++  + GGNL E   + S   R+    + +     M
Sbjct: 158 LLTAMRNLQKITPSENFADLLNDLALVFRTGGNLKEFFNSRSDSYRELARQELEATLQIM 217

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           E  A  ++   +   ++ ++   +         +  G   LG     M +G+
Sbjct: 218 EMIAEVYVTAFVAGPIALIIMLVA--------QNLSGRGQLGGIMPLMYVGL 261



 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            K  T +     P  L  I      G+ +  A+ ++       + SE +        G S
Sbjct: 392 RKMYTRRVEAQMPEFLRDIADMKDLGMTLQTAIEMVSSSKLGLLSSELKIASREVKWGYS 451

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +S ++ RM   + L  V    ++I   S++   L + L      L     M++K
Sbjct: 452 VSSALVRMEERIGLVSVKRAISLIVKASEITDQLRDILTIAISDLDHYLKMQSK 505


>gi|206901854|ref|YP_002250592.1| FimO [Dictyoglomus thermophilum H-6-12]
 gi|206740957|gb|ACI20015.1| FimO [Dictyoglomus thermophilum H-6-12]
          Length = 409

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F   ++       AGL +S  + ++  QS    ++   + V      G SLSE+ +
Sbjct: 75  FTRQFATMIN-------AGLSLSTCLNILSEQSESKALKQILKEVQRMVDEGSSLSEAFA 127

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +          S     +   ++  G L E L  L+  L  ++ ++ K+++         
Sbjct: 128 KFPDV-----FSPLYINMVKAAESAGTLDETLERLAVTLEKQQELRRKIKSAMTYPVIVL 182

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I     F + T +     G    +
Sbjct: 183 IIAIGAGFGMLTFLVPIFAGMFESM 207


>gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425]
 gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425]
          Length = 406

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +  +  K  A F   F          V AG+ +   + V+  Q ++P ++     V    
Sbjct: 59  LSKITVKDRAIFSRQF-------AALVNAGVALVRGLGVMADQCTNPKMKKVLTSVNNDV 111

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS+++         +        +    + GG L + L  LS++L D+  +  ++
Sbjct: 112 QQGTTLSDAM-----RGHPEAFDNLYVAMIQAGETGGVLDDVLNRLSKLLEDQARLNNQI 166

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++          +   + F +   +     G    L
Sbjct: 167 KSAMAYPVTVGGLAVLIFFGMIIFLIPVFSGIFKQL 202


>gi|218290610|ref|ZP_03494712.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239394|gb|EED06591.1| hypothetical protein AaLAA1DRAFT_2298 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 278

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 64/177 (36%), Gaps = 5/177 (2%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             ++ D    A+++    V AG  V + +     +   P+++ F R  +     L++++ 
Sbjct: 101 MIRYEDGVRQAVELGTGIVEAGGTVEEWILQGEREIEGPLQAVFARGAQQVRERLAVADW 160

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +       P    S+    +      GG+L      ++R L+ R+  +     +  + + 
Sbjct: 161 LRYTADTTPSNYWSYVCNGVLSHLDSGGDLVRFFVEVARELQVREKYRR----VMAQQRK 216

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLIN-DPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            A  +          +Y      ++ L+  +P   +L  VA    ++     R M  
Sbjct: 217 EATQLLLAMLVSPAALYLMFRRSLDNLMQAEPFMQVLFAVALVGYVVLFWFARRMAR 273


>gi|315657630|ref|ZP_07910512.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492102|gb|EFU81711.1| type II secretion system protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 408

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 75  YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   E     +        V +Q+G  L+E L  ++  +       AK     +  KA+
Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A ++G LP     +  F     +++         +  +    M+ G +    MI 
Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFVIGLGLMVAGNLWSAAMIR 262


>gi|253576053|ref|ZP_04853386.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844628|gb|EES72643.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 288

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 5/179 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K R     D  P+ L + +  +     V  A+   V       +  F +      
Sbjct: 98  LKVKRKIRQNVLFD-LPSNLRLFISKLTDFPNVQKALENAVLDMDGVTKPIFEKASNQLR 156

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG--GNLSEALANLSRILRDRKNMKAK 118
           +GL +      M+  + ++++  F   + +    G      ++L      + +      +
Sbjct: 157 VGLPIDRVFEEMLSELKIRKMEDFLDKLRMAQMEGFHPQSLDSLKETVDEIGEDITQIQE 216

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG--VAAAFMLIG 175
           +   +   +   + +  + + +  ++ F + G  NV +N   G + +    AA    IG
Sbjct: 217 LDIEAKSKRKQLFTVIGMAWMMPVMMSFMNNGNANVFLNTLHGQIYIVSFAAATLFSIG 275


>gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A]
 gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 453

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 5/170 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           + K++  K    F + L  +   +R G+     V  +       ++ E +       LG 
Sbjct: 136 MQKRKLRKQEVAFSDFLYKLSELMRGGIDPVKGVIALSRGELGAIKKEVQDCASFLVLGH 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL  S++R+   +  + V+ +  +I   +  GGN+++ +   S  +R   +++ + +   
Sbjct: 196 SLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLVFRTSEDMRAVISLEREKENNL 255

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +      ++  L   +  ++ +     +  LI    G  +LG      +
Sbjct: 256 KQY----AVVFYLAQGIMVMLVYILSTSLLPLIQ-GTGMAMLGGQGVSDI 300


>gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 294

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSESISRMVRY 75
            + ++     +G+ V  A+ V+  +  D +     E R V+     GL L E + +    
Sbjct: 152 FIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSGLELGEELRKTAAL 211

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + + E+S    +++     GG   ++L  L +++ DR+  + +     + AK S  ++  
Sbjct: 212 LAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYISKLSAKMSVVMMVF 271

Query: 136 LPFCVSTLVYFTSPGYMNV 154
           L    + L+    PG+M +
Sbjct: 272 L--FPALLIVLAGPGFMAI 288


>gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 297

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 50/134 (37%), Gaps = 1/134 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    KR  +      +  D++V S+  G  V+ A+A      +    +  R  +    
Sbjct: 142 LRDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQAT 201

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L   S   ++  +       E +  +  + +    G  +  +LA  ++ LR +   +   
Sbjct: 202 LMRQSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEMDA 261

Query: 120 QALSMEAKASAWII 133
           +A S   + S  +I
Sbjct: 262 EAQSATERMSLPVI 275


>gi|299529575|ref|ZP_07043012.1| general secretion pathway protein F [Comamonas testosteroni S44]
 gi|298722438|gb|EFI63358.1| general secretion pathway protein F [Comamonas testosteroni S44]
          Length = 407

 Score = 49.7 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+A +  ++ D  + +    +    + G S + ++ +  R     E 
Sbjct: 77  LSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR-----EF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L NL+  L  R+ +++K+   S+     A +       V 
Sbjct: 132 SDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASL---YPAIVTLVAIVIVI 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P    V     R    L V   
Sbjct: 189 FLVSYVVPQVAGVFAGTKRALPFLTVVML 217


>gi|77454609|ref|YP_345477.1| hypothetical protein pREL1_0042 [Rhodococcus erythropolis PR4]
 gi|77019609|dbj|BAE45985.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 292

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 17/180 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R A            +  S+RAG  +   +  I     + ++ E    I      +  +
Sbjct: 98  RRLAAMD----EWTRNLSSSMRAGSGIEHTI--ISTPIPETLKDEITAFINRLRNNVPPA 151

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQA 121
           E+++R    +           + +  Q  G  L+  L  L+  + D    R+ ++A  ++
Sbjct: 152 EAVTRFASDLNDSVGDKICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKS 211

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              +AK    I  ++         F  P             ++L +        +  M+ 
Sbjct: 212 TRTQAKWVTIITIAVLAAAFAFTNFMEP------YRSGGMQIVLLILLTLFAADLYWMKQ 265


>gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 261

 Score = 49.3 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 5/182 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ-H 60
           HL+  R + F ++    L +++  + AG+P+  AV  +   +    +  E          
Sbjct: 69  HLVSARRSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMIV 128

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +G S  E++S     +P         +++  ++L   +   L      L   K +KA+  
Sbjct: 129 MGSSPEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSL 188

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             SM      +++ ++       +   S   + VL     G + L      +L+ ++ M 
Sbjct: 189 VRSMSLMFEIFVVVTILLPTLVYIVALSLSPLGVL---ELGGLALDPLTLMLLMSLIYMP 245

Query: 181 LM 182
           +M
Sbjct: 246 IM 247


>gi|229492886|ref|ZP_04386682.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229320160|gb|EEN85985.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 294

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  S+RAG  +   +  I     + ++ E    I      +  +E+++R    +      
Sbjct: 112 LSSSMRAGSGIEHTI--ISTPIPETLKDEITAFINRLRNNVPPAEAVTRFASDLNDSVGD 169

Query: 83  FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137
                + +  Q  G  L+  L  L+  + D    R+ ++A  ++   +AK    I  ++ 
Sbjct: 170 KICGALLLAMQLRGVGLANVLEGLAEDVGDTVARRRRIEADRKSTRTQAKWVTIITIAVL 229

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                   F  P             ++L +        +  M+ 
Sbjct: 230 AAAFAFTNFMEP------YRSGGMQIVLLILLTLFAADLYWMKQ 267


>gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 591

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 10/179 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLG 62
           R      +FP     +   V +GL    A   I   S        +   F  ++    LG
Sbjct: 97  RAGGIEGEFPYTTAYLSMMVMSGLSPYVAFERITHASKVFTKTAELSQRFILLVR--VLG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                + S + +  P               + GG++++ L   +R+L     ++ K+ A 
Sbjct: 155 RDPLTAFSMLAQRTPSPTARDLLMGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIAD 214

Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMN--VLINDPRGHMLLGVAAAFMLIGIMV 178
            +     A++ +  L      ++YF +  +++       P    L+      M+ G+++
Sbjct: 215 RLAGLLEAYLALVLLSLISLAVMYFVTVSFVSAVPFGLSPASLFLVLYILIPMISGMII 273


>gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 402

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P++ A+  +  Q ++P +R+    V      G S S+++S           
Sbjct: 72  LTSMLDAGIPLTRALFTLSKQIANPTLRNAVSDVARNVEGGQSFSDALSAHPGI-----F 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     ++   ++GG LSEAL+ LS  L   K+++  V++ S        ++G     V 
Sbjct: 127 STLFVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRDHVRSASF---YPIAVLGFAGVVVL 183

Query: 142 TLVYFTSPGYMNVLINDPRGHML 164
            ++YF  P +M      P G +L
Sbjct: 184 AMLYFLVPVFMQFF---PEGMVL 203


>gi|47568976|ref|ZP_00239667.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|208743461|ref|YP_002267912.1| membrane protein, putative, (pxo1-60) [Bacillus cereus]
 gi|301068121|ref|YP_003786892.1| membrane protein [Bacillus anthracis CI]
 gi|47554360|gb|EAL12720.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|300379211|gb|ADK08114.1| membrane protein, putative [Bacillus cereus biovar anthracis str.
           CI]
          Length = 310

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +  + +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 587

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGL 63
           ++ R     D  P+AL ++ R+V  G  V  A+A                 V   + L +
Sbjct: 359 LRARVRAVEDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDEAVGVQRRLRV 418

Query: 64  SLSESIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM----K 116
            + ES      ++   P   V+  +T++ + +  G     A+ +++  L     +    +
Sbjct: 419 GVVESFRGEYGVLESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQLSALARLDAEAR 478

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLV 144
            ++ +++     +A + G L    +  +
Sbjct: 479 RELASVTETLSNTAAVFGPLVAGATVAL 506


>gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 207

 Score = 49.3 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 20  LDIIVRSVRAGLPVSD-AVAVIVGQSSDP----VRSEFRRVIETQHLGLSLSESISRMVR 74
           LD+    V++GL  S  A AV   + S P    VRS +  V     +G+    +   +  
Sbjct: 67  LDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMMLEMGMPAERAWQSLAE 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +  L ++    TV     + G  L+EA   L+R LR R         LS+     A ++ 
Sbjct: 127 HPALGDL---VTVARASERSGATLAEACERLARQLRARA------SDLSLARAERAGVLI 177

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGH 162
           +LP  V  L  F   G   V+I+   G 
Sbjct: 178 ALPLTVCFLPAFFLLGLAPVVISLGIGI 205


>gi|182414900|ref|YP_001819966.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177842114|gb|ACB76366.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 439

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VRAG+P+   + V+  Q S P  R     +  T   G SLSE++++  R       
Sbjct: 107 LATLVRAGMPLVRGLEVLARQESGPRFREIVNDLAATIRAGESLSEALAQHPRV-----F 161

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 ++   + GG L   L  L+  L     +KA++            ++      V+
Sbjct: 162 DRLYVSMARAGEAGGVLHVVLERLAAFLEKSARLKARIA---AAMTYPVIVLALAGGIVA 218

Query: 142 TLVYFTSPGYMNVLINDPRGHML 164
            L+ F  P +  +     +G  L
Sbjct: 219 ALMVFVVPRFEQIFSGLLKGQPL 241


>gi|314922439|gb|EFS86270.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
          Length = 236

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 5/153 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   V  G   S A+  +             +      +G S+S+++    R   +
Sbjct: 88  ATRALAGRVSVGEIPSVALEHVADDV-----EVLAQARRAHAVGGSVSDALIATSRQPGM 142

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +   +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP 
Sbjct: 143 AGLVPLAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPL 202

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
               + +         L     G   L  +   
Sbjct: 203 VGLLMGHVVGAHPTVFLTTTRLGRACLLGSTLL 235


>gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
 gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            ++R A+ +   P ALD++V ++ AG     A AV+   +  P+  E R +     +   
Sbjct: 82  RQRRQAEMVRLLPAALDLVVTALEAGRSPGGAFAVVADAAPAPLAEELRGLARRLEVAAD 141

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             +    +   +    ++     +      G   +  +A ++  LR  +  +   ++ S+
Sbjct: 142 PLDVWDAL---VRDPTLAPVGRALRRSEVTGMPAARVVARVADDLRRTRRAEIAHRSRSV 198

Query: 125 EAKASAWI-IGSLPFCVSTLV 144
               +A + +  LP      +
Sbjct: 199 GVATAAPLGLCFLPAFFLVGI 219


>gi|10956307|ref|NP_052756.1| hypothetical protein pxo1_60 [Bacillus anthracis]
 gi|21392772|ref|NP_652851.1| hypothetical protein BXA0086 [Bacillus anthracis str. A2012]
 gi|47566407|ref|YP_016417.2| membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|167636781|ref|ZP_02395064.1| membrane protein, putative [Bacillus anthracis str. A0442]
 gi|167642108|ref|ZP_02400330.1| membrane protein, putative [Bacillus anthracis str. A0193]
 gi|170689827|ref|ZP_02880997.1| membrane protein, putative [Bacillus anthracis str. A0465]
 gi|170709478|ref|ZP_02899878.1| membrane protein, putative [Bacillus anthracis str. A0389]
 gi|177656380|ref|ZP_02937273.1| membrane protein, putative [Bacillus anthracis str. A0174]
 gi|190569518|ref|ZP_03022379.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I]
 gi|229599847|ref|YP_002860776.1| hypothetical protein BAA_A0084 [Bacillus anthracis str. A0248]
 gi|254687777|ref|ZP_05151633.1| hypothetical protein BantC_28598 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739267|ref|ZP_05196969.1| hypothetical protein BantWNA_29281 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254745063|ref|ZP_05202740.1| hypothetical protein BantKB_29365 [Bacillus anthracis str. Kruger
           B]
 gi|254762573|ref|ZP_05214413.1| hypothetical protein BantA9_29198 [Bacillus anthracis str.
           Australia 94]
 gi|4894276|gb|AAD32364.1| pXO1-60 [Bacillus anthracis]
 gi|20520159|gb|AAM26041.1| putative membrane protein [Bacillus anthracis str. A2012]
 gi|47552222|gb|AAT28827.2| membrane protein, putative [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167509791|gb|EDR85215.1| membrane protein, putative [Bacillus anthracis str. A0193]
 gi|167527707|gb|EDR90546.1| membrane protein, putative [Bacillus anthracis str. A0442]
 gi|170125439|gb|EDS94366.1| membrane protein, putative [Bacillus anthracis str. A0389]
 gi|170666202|gb|EDT16995.1| membrane protein, putative [Bacillus anthracis str. A0465]
 gi|172079740|gb|EDT64857.1| membrane protein, putative [Bacillus anthracis str. A0174]
 gi|190559297|gb|EDV13321.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I]
 gi|229269466|gb|ACQ51102.1| putative membrane protein [Bacillus anthracis str. A0248]
          Length = 310

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +  + +R  ++    +D     +  +  +++        +  +     + ++ E  +V  
Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKVSL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC
           43063]
 gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
 gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 408

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 75  YMPLQE-----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            +   E     +        V +Q+G  L+E L  ++  +       AK     +  KA+
Sbjct: 148 RVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVADGIAATLETAAKRHTAQVGPKAT 207

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           A ++G LP     +  F     +++         +  +    M+ G +    MI 
Sbjct: 208 ARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWVFVIGLGLMVAGNLWSAAMIR 262


>gi|306823786|ref|ZP_07457160.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304552784|gb|EFM40697.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 270

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  SVR+G  +  A   + G    + +  RS    V           E   +M R     
Sbjct: 110 LQASVRSGATLVQAFEELGGCAFATPELTRSRIEMV---LRCRCPPEEQGEQMRRL--SA 164

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+        +   LG   S  LA +   L+ ++ +    +      +A+  ++ +LP  
Sbjct: 165 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 221

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 222 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 266


>gi|83591454|ref|YP_425206.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574368|gb|ABC20919.1| type II secretion system protein [Rhodospirillum rubrum ATCC 11170]
          Length = 411

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           L+ +R A    +       + R++ AG+P+ +A+  I        +R   RRV      G
Sbjct: 60  LVGRRGAIAERELQQLFLHLDRALGAGVPLLEALDDIGEVTGDGRLRMILRRVRGDLSQG 119

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L+LS+++ R  R +        + V+    + G +L  A   L   LR R+++  +++  
Sbjct: 120 LALSDALGRHERALG----PMVAPVVRAGEESG-DLGGAFGPLVAHLRWREDLGRRLRKA 174

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +    ++G++      L+    P   + L
Sbjct: 175 T---RYPLVVLGAIALLFVFLMAVVVPDLASFL 204


>gi|209522190|ref|ZP_03270831.1| general secretion pathway protein F [Burkholderia sp. H160]
 gi|209497381|gb|EDZ97595.1| general secretion pathway protein F [Burkholderia sp. H160]
          Length = 405

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 27/195 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALQQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------- 170
                      I   +   V+ L+ +  P  +NV  +  +    L V             
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTVVMMALSGFVRHWW 225

Query: 171 -FMLIGIMVMRLMIN 184
             MLIG++V+  ++ 
Sbjct: 226 WAMLIGVLVIAYLVR 240


>gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 641

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++        P+ LD +      G+ ++ ++AVI   +   +  E  R+      G + S
Sbjct: 422 QKIRSLESMIPDFLDRMAGINEVGITLTQSIAVIARANMGVLGYEISRIHRDIEWGANFS 481

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ R    +    ++   T+I+  + +  ++S  L   +   R  +N++        E 
Sbjct: 482 DALIRFEHRVRTALIARTVTLITRAATMSSSISSLLRIAANDARMSENLRR---DRFSEM 538

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                I+    F    ++   +  ++ VL
Sbjct: 539 FIYTAIVYLSFFVFIFVIGVITTQFLTVL 567



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 8/177 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61
            K R  K     PNA+  +    + G  +   +  +   S+    V  EFR+ +      
Sbjct: 123 KKSRETKITIGLPNAVSYMYAMRKGGAEIITILRSLSEMSAIYGEVSLEFRQAVRDADFF 182

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-- 119
           G  +  ++  +    P +++  F   +    + GGNL++ L +   IL++    + K   
Sbjct: 183 GYDIINALKHVSETTPSRKLRDFLQDLISTVESGGNLAQFLQDRVFILQEEAKFEQKQFL 242

Query: 120 --QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               L  E   + +I G L F +  LV     G   +L     G+ +L + AA  ++
Sbjct: 243 QFLGLVAEIYVTIFIAGPL-FLIVILVVMGMMGSSAILELSLIGYAVLPIGAAIFIL 298


>gi|165873432|ref|ZP_02218031.1| membrane protein, putative [Bacillus anthracis str. A0488]
 gi|227811506|ref|YP_002811517.1| hypothetical protein BAMEG_A0081 [Bacillus anthracis str. CDC 684]
 gi|254756466|ref|ZP_05208495.1| hypothetical protein BantV_28727 [Bacillus anthracis str. Vollum]
 gi|164710807|gb|EDR16385.1| membrane protein, putative [Bacillus anthracis str. A0488]
 gi|227008037|gb|ACP17779.1| putative membrane protein [Bacillus anthracis str. CDC 684]
          Length = 310

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +  + +R  ++    +D     +  +  +++        +  +     + ++ E  ++  
Sbjct: 115 RFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHESIQEEIEKISL 174

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISV-QSQLGGNLSEALANLSRILRDRKNMK 116
               G ++  +          +E+ FF  ++ V   + G N  + L +++     +K   
Sbjct: 175 LLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYL 234

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
           A++++   +A+ +      +   +  ++   S      L     G + L V
Sbjct: 235 ARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSMMGKIALAV 285


>gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 348

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           AK     P+ L ++  ++RAG+   ++    +      +     +       G + SE++
Sbjct: 100 AKIEKVLPDMLLLMAANLRAGMIPENSFIASMKPEFGKLNYLLNKAAIETQAGKNFSEAL 159

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-SRILRD---RKNMKAKVQALSME 125
             M      +       +IS   + G  L   L NL S +LR+   R +M+A+V++ S+ 
Sbjct: 160 LEMNDMTNSEFFKDSVRIISEGIRSGAELHLILENLASNLLRNESIRNDMRAQVKSYSLF 219

Query: 126 AKASAWIIGSLPFCVSTLVYFT 147
              +A +   L + VS+ +   
Sbjct: 220 IFIAATLAAPLLYGVSSFLIGI 241


>gi|239814078|ref|YP_002942988.1| general secretion pathway protein F [Variovorax paradoxus S110]
 gi|239800655|gb|ACS17722.1| general secretion pathway protein F [Variovorax paradoxus S110]
          Length = 411

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++  +P R+    +    + G   + +++   R     E 
Sbjct: 81  LAGLVSSGLPLERALTALTDEAETEPQRNLVASLRAEVNAGSPFARALAAHPR-----EF 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S   T +    +  GNL   L  L+  L +R+ ++ K+      A   A +       V 
Sbjct: 136 SPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIG---AALYPAIVTLVAIVIVI 192

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            LV +  P    V     R    L      +   +
Sbjct: 193 FLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAAV 227


>gi|118431778|ref|NP_148457.2| hypothetical protein APE_2206.1 [Aeropyrum pernix K1]
 gi|116063100|dbj|BAA81218.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 284

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 19/178 (10%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N L  I  + + GL    ++  +  +   P+    RR+  +  LG+SL +S+ R VR + 
Sbjct: 74  NFLRDIAETRKTGLSPEQSIISLSARDYGPLTKVVRRIATSLQLGMSLEDSVRRSVRRIK 133

Query: 78  ----LQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALSMEAKAS 129
               L  + F    ISV    GG   E L  L+R    ++  +   + + +   +     
Sbjct: 134 DWASLSALRFLVDSISV----GGGSPEVLDALARYTYGLVSIQDEFRKRTRIYIIMPYLG 189

Query: 130 AWIIGSLPFCVSTL----VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           A I+ +    +       +   +PG    ++  P     +GV    + IG+M+   M+
Sbjct: 190 AIIVAASTLVMLGYTIKTLQVVNPGGETSVVAVPEN---IGVVGLILAIGVMLNSWMM 244


>gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
 gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
          Length = 590

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 8/177 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE 67
                  F + L       ++G      ++ +        +    + + +    G+ +  
Sbjct: 375 RRSLERAFSDFLRDFTELRKSGFTPEKIISTLADTRDYGALSRYLKDISKQIRYGIPIRV 434

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAKVQALS 123
            +S  +          F+ ++    + GG   E L +L+     ++R   ++ A+++ L 
Sbjct: 435 VLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRINDDLLARLKPLR 494

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV---LINDPRGHMLLGVAAAFMLIGIM 177
                 A I+      +   V   S  ++++    +N   G   L +     ++G++
Sbjct: 495 FVPYIGAMILTLTLVIMVFTVVGLSSVFLHIPQYYVNYVVGSFALTIVVDSFVMGLV 551



 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG----QSSDPVRSEFRRVIETQHLGLS 64
             K   + P     +    ++GL V+ A+  +      ++   +  E   V++ + +G+ 
Sbjct: 115 QYKVDSELPFFAAYLAMISQSGLSVTSAIERLANIRLLEAIGKIARE--IVVKNKAIGMD 172

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA----NLSRILRDRKNMKAKVQ 120
              +++      P               + GG++   L      +     D+    A+  
Sbjct: 173 PLTALTESALSTPSHLFQNLIMGYVTNVRTGGDILHYLEIRLNEIVNDTLDKIRRGAEFL 232

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
           +  ME+   A +I  +   V  L    +P 
Sbjct: 233 STLMESYIGAGVILLIGLNVLYLAQAITPT 262


>gi|90412975|ref|ZP_01220973.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           3TCK]
 gi|90325990|gb|EAS42429.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           3TCK]
          Length = 406

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 9   TAKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLG 62
              F +D P  AL I  R +    +AG+P+  A+  +   +S P+  E    V+     G
Sbjct: 55  KQLFQNDIPLEALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMTDLTNG 114

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SLS ++ +  R         F ++I V  +  G L E+L  L+         + +++  
Sbjct: 115 HSLSAAMKQHRRVFS----DLFVSMIHV-GENTGRLDESLLQLAHYFEQEMETRRRIK-- 167

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               +   ++I ++   +  L     P + ++ 
Sbjct: 168 -SAMRYPLFVISAIMLAMVVLNIKVIPQFASMF 199


>gi|229065596|ref|ZP_04200826.1| hypothetical protein bcere0026_55990 [Bacillus cereus AH603]
 gi|228715665|gb|EEL67458.1| hypothetical protein bcere0026_55990 [Bacillus cereus AH603]
          Length = 174

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +     D ++ E  +V      G ++  +          +E+ 
Sbjct: 4   VANALQISNNAKRVLLQVKPMMHDSIQEEIEKVSLLLEGGTTMHRAFRGFNETFNFRELV 63

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 64  FFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 123

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++   S      L     G + L V
Sbjct: 124 IIIMLMSKEAYGFLAGSMMGKIALTV 149


>gi|218290592|ref|ZP_03494694.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239376|gb|EED06573.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 286

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 14/165 (8%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRVIETQH-LGLSLSESISRMVRYM 76
           ++  GL V +A   +     D +R         EF  +      LGL   +++       
Sbjct: 126 ALPLGLSVLEATEDVGLAIEDILRHGKDPVIQREFEAIRARVKALGLPPEDALVEHASES 185

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +    + +       + G N S    ++   L+D+   ++ ++A +   +  A++ G+ 
Sbjct: 186 GIPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                   Y      +   +        L V A  + +GI  M  
Sbjct: 246 GLFGLMAFYHAYAQSLIGFV-----PWALLVWAVLVGVGIYRMAR 285


>gi|54310367|ref|YP_131387.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           SS9]
 gi|46914808|emb|CAG21585.1| putative MSHA biogenesis protein MshG [Photobacterium profundum
           SS9]
          Length = 407

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 9   TAKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLG 62
              F +D P  AL I  R +    +AG+P+  A+  +   +S P+  E    V+     G
Sbjct: 56  KQLFQNDIPLEALVIFCRQLYSLTKAGVPLLRAIKGLGQSASHPLMKETLDAVMSDLTNG 115

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SLS ++ +  R         F ++I V  +  G L E+L  L+         + +++  
Sbjct: 116 HSLSAAMKQHRRVFS----DLFVSMIHV-GENTGRLDESLLQLAHYFEQEMETRRRIK-- 168

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
               +   ++I ++   +  L     P + ++ 
Sbjct: 169 -SAMRYPLFVISAIMLAMVVLNIKVIPQFASMF 200


>gi|296394990|ref|YP_003659874.1| transmembrane protein [Segniliparus rotundus DSM 44985]
 gi|296182137|gb|ADG99043.1| putative transmembrane protein [Segniliparus rotundus DSM 44985]
          Length = 285

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 15/179 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-------DPVRSEFRRVIETQHLGLSLSESISR 71
           AL  +V  +R G   + A A    + +         V    R V     LG  + + + R
Sbjct: 103 ALMAVVDELRVGAHPAHAFASAAQEGALAATCGGREVARTMREVAARARLGGDVGQGLRR 162

Query: 72  MVRYMPLQEVSF-------FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                    +          ++   +  Q G  +++ L ++      R     +  A   
Sbjct: 163 RAAAARSAGLGLGGAFWERLASCWELSHQEGVPIAQVLGSVRADAVQRVRFAERADAALA 222

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            A+A+A I+  LP     L        + VL +D  G  LL +   F+  G+   R + 
Sbjct: 223 GARATAKILSGLPLLCVVLGQSLGAQPLRVLFSD-SGSFLLMIGCGFLCAGLAWSRRIT 280


>gi|264676753|ref|YP_003276659.1| general secretion pathway protein F [Comamonas testosteroni CNB-2]
 gi|262207265|gb|ACY31363.1| general secretion pathway protein F [Comamonas testosteroni CNB-2]
          Length = 407

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+A +  ++ D  + +    +    + G S + ++ +  R     E 
Sbjct: 77  LSGLVSSGLPIERALAALSEEAEDERQHQLVAALRAEVNAGSSFARALEQHPR-----EF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L NL+  L  R+ +++K+   S+     A +       V 
Sbjct: 132 SDIFCAVIGAGESSGSLGPVLENLADDLEARQALQSKLIGASL---YPAIVTLVAIVIVI 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P    V     R    L V   
Sbjct: 189 FLVSYVVPQVAGVFAGTKRALPFLTVVML 217


>gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 417

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   V+AG+P+   + V+  QS +  +R     V      G +LSE++   
Sbjct: 78  RDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKTLRLTAASVAMAVEAGNTLSEALRAF 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P      F T++    + GG L E L  L+  L    +++AKV+           I
Sbjct: 138 PKIFP----ELFVTMVE-AGETGGALEEVLERLATQLEKDADIRAKVK---SAMSYPLVI 189

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
           +      +S ++ F  P +  +L +
Sbjct: 190 LAVALAAISIILIFVLPTFTEMLTS 214


>gi|104781449|ref|YP_607947.1| type II secretion pathway protein F (XcpS-2) [Pseudomonas
           entomophila L48]
 gi|95110436|emb|CAK15144.1| putative type II secretion pathway protein F (XcpS-2) [Pseudomonas
           entomophila L48]
          Length = 401

 Score = 48.9 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 6/152 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + AGLP+  A+   + Q+    +      V      G+ L++++        
Sbjct: 67  ATRQLASLLAAGLPLEAALGATLEQAERKHIAQVLGAVRADVRSGMRLADAL---AERP- 122

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            ++       +    +  G+L+  +  L+  + +R  ++ K+    +       +   + 
Sbjct: 123 -RDFPDIYRALVAAGEESGDLARVMERLADYIEERNTLRGKIMTAFIYPGVVGLVSVGIV 181

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             + + V             D  G  L  +AA
Sbjct: 182 IFLLSYVVPQVVSAFTQARQDLPGLTLAMLAA 213


>gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
 gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
          Length = 405

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          V AG+ +   + V+  Q S+P ++     +      G +LS+++ 
Sbjct: 70  FSRQF-------AAMVNAGVAIVRCLGVLGEQCSNPKLKKALMNISAEVQQGTNLSDAMR 122

Query: 71  RMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +        +        +    ++GG L E L  L+++L D   ++ ++++        
Sbjct: 123 K------HPDCFDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQNQIKSAMAYPSVV 176

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++   +   ++  +     G    L
Sbjct: 177 GFLALLVFLAMTMFLIPIFAGIFQDL 202


>gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
          Length = 406

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 17/170 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
            A F   F          V AG+ +   + ++  Q ++P ++     +      G SLS+
Sbjct: 68  RAVFSRQF-------AVMVNAGVAIVRCLGILSEQCANPKLKKSLTAISSEVQQGTSLSD 120

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++                  +    ++GG L E L  L+++L D   ++ +++       
Sbjct: 121 AMREHP-----ACFDQLYVSMVQAGEVGGVLDEVLNRLAKLLEDMARLQNQIK---SAMT 172

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
               + G        +  F  P     +  +  G +    A    L G++
Sbjct: 173 YPLVVGGFAVLVFLGMTIFLIP-IFAGIFEEIGGTLPALTAFMLWLSGVL 221


>gi|326390768|ref|ZP_08212321.1| hypothetical protein TheetDRAFT_1561 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993162|gb|EGD51601.1| hypothetical protein TheetDRAFT_1561 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 297

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 62/151 (41%), Gaps = 2/151 (1%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           + +A+       S+P+RS  +R V   +   +S+ E +  M      +E   F     + 
Sbjct: 144 IINALKSTTPYISEPLRSIIKRNVFLYEKTQMSVDECLENMAVEAGNREFRKFINFAKMN 203

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           ++ GGN ++AL  L        ++++   A +        I+  +   +   +  T P  
Sbjct: 204 AKYGGNFNKALMKLREQGEKLFSLESIKAANASVGSMVILIMIVINLLLMMNIS-TDPDI 262

Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           + ++ N   G  +    A  ++ G+ +++ +
Sbjct: 263 VYIVKNTITGQAIAISNAVSIIFGLYMIKNI 293


>gi|229825135|ref|ZP_04451204.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
           49176]
 gi|229790507|gb|EEP26621.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
           49176]
          Length = 404

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 6/156 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV--IVGQSSDPVRSEFRRVIETQ 59
           K  IK R  +  + +   +   V  + AGL VS           S+  +  E R  +   
Sbjct: 252 KKKIKDREEELKNGYTEFVGRFVILLGAGLSVSAIWKKLEAGFASNKSLSEEIRLTLWET 311

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG-GNLSEALANLSRILRDRKNMKAK 118
             G +  E+     + +   + + F +VI+   +LG G L   L   S      +  +AK
Sbjct: 312 ANGKTEREAYENFGKRIGGTQYAKFVSVINQSLKLGSGQLLARLEAESEAAMFERRNRAK 371

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           V     + K    ++  +   V  ++    P  M V
Sbjct: 372 VMGEVADTKL---LLPMMLQLVLIMLIIMVPALMAV 404


>gi|224368238|ref|YP_002602401.1| GspF1 [Desulfobacterium autotrophicum HRM2]
 gi|223690954|gb|ACN14237.1| GspF1 [Desulfobacterium autotrophicum HRM2]
          Length = 411

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 6/167 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
             +       +   + AG P+  AV+ +V Q+   P++    ++  +   G S +E+++ 
Sbjct: 71  NAELAMVTRQLATLLSAGFPLISAVSSLVTQTRSKPLKKVLSKIKGSIEEGKSFAEALAM 130

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P    S     +    +  G L   L  L+ I   R+  K K+QA        A 
Sbjct: 131 ----YPSL-FSAIYINMIRAGESSGTLEIVLERLADITEKREETKKKIQAALAYPVLMAI 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   +   +   +        + +     G  L  ++ +  L     
Sbjct: 186 VGALVLLFLLAYIVPGIIAIFSDMNQTLPGPTLFLISVSSFLKRFWW 232


>gi|309802104|ref|ZP_07696214.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221305|gb|EFO77607.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 249

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +  SVR+G  +  A   + G    + +  RS    V           E   +M R     
Sbjct: 89  LQASVRSGATLVQAFEELGGCAFATPELTRSRIEMV---LRCRCPPEEQGEQMRRL--SA 143

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E+        +   LG   S  LA +   L+ ++ +    +      +A+  ++ +LP  
Sbjct: 144 ELY---AACQLSMALGCETSRCLAAVLASLKRQRLLNDLRRNAFAMPQATVKLLMALPLL 200

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              L        +  L  D RG + LG A     IG++ +R+++ 
Sbjct: 201 TVLLGEGMGARPLAFLCGDARGLLCLGFALGCYAIGLLWIRVLLR 245


>gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 418

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 16/160 (10%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRRVI 56
           KR  + L D+   L  ++  + AG+ +  A   +            Q       E     
Sbjct: 262 KRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWDKVAFDYQKLVDDGKQKPRYAYQEMYETS 321

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRILRDRKN 114
                G+    +     R   LQ+    S+++    + G  NL + L   ++     RK+
Sbjct: 322 CQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLLEQNRKNGSKNLRDTLKVEMAEAFEQRKH 381

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              ++     E   +  ++         +V    P  M  
Sbjct: 382 QARRL----GEEAGTKLLLPLFMMLSVVMVVIAVPALMEF 417


>gi|296141575|ref|YP_003648818.1| type II secretion system F domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296029709|gb|ADG80479.1| Type II secretion system F domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 269

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 3/166 (1%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           +D +V  +  G   + A A     + D  VRS F  +     LG  ++  +         
Sbjct: 93  VDAMVAELSVGAHPAAACATAGRDAEDSHVRSVFAEMAGRAELGGDVAAGLRLHA--SES 150

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 +      ++ G  + E LA++   LR R+  + +  +    A+A+A ++ +LP 
Sbjct: 151 TAWERLAAAWETGTRHGIGMGELLASVREDLRARERYERRAHSALAGARATAQVLAALPV 210

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +        +  L++   G +LL V       G++  R + +
Sbjct: 211 LGVAMGQLIGADPLGTLLSTGAGGVLLVVGVCLTCAGLLWSRSIAD 256


>gi|237786542|ref|YP_002907247.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759454|gb|ACR18704.1| hypothetical protein ckrop_1996 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 216

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS------SDPVRSEFRRVIETQH-L 61
             + +  +  A  +I   + AG     AV  +  +          V  E R ++     L
Sbjct: 30  QRQVIAQWAQASSMIASELLAGASPLVAVRHVADEMDGADDMEGQVARELRTMVNHCAWL 89

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G   +  +S              +    V  + G  L+E +   +  L+ + + + + +A
Sbjct: 90  GAPCA-PLSTWSSEPEQVGRQAIARAWLVSHRTGVPLAEVMQATAADLQAKLHHQERTEA 148

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
                +AS  ++  LP     +      G ++ L+  
Sbjct: 149 SLAGPRASTRVLMFLPLVGVAMGQSMGAGSIHFLLTT 185


>gi|258516391|ref|YP_003192613.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780096|gb|ACV63990.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 403

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +++ ++KR    +         +   + AG+P++  +  +  QS +P +      +    
Sbjct: 50  LRNALQKRGKVKIGQLSFFSRQLSAMLTAGIPLTRGLYTLSEQSENPVLARAAGEMAHAV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+S S ++S             +  +I    ++GG + E L  LS  L   K ++  +
Sbjct: 110 EGGMSFSAAMSAHQDIFS----KMYVDMIK-AGEVGGMMEEMLNRLSMQLEREKILRDNI 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           ++ +          G +  C+   +     G++
Sbjct: 165 KSATFYPIIIIMFAGLVILCMMFFIVPIFEGFI 197


>gi|4139238|gb|AAD05175.1| general secretory pathway protein F [Burkholderia pseudomallei
           1026b]
          Length = 405

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLAHYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|308051179|ref|YP_003914745.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633369|gb|ADN77671.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 405

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   R+G+P+  A+A +V     P+  +  + ++E    G  LS ++++  R       
Sbjct: 73  MLSLTRSGIPLLQALAGLVESQRHPLMAAALKDIVEQLTAGRPLSAALNQHPRV-----F 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L +A   LS  L   ++ + ++Q      +    ++G +   V+
Sbjct: 128 NALYVAMVHVGENTGRLDQAFERLSDHLEQEQDTRRRIQ---SAMRYPLLVLGFIAIAVA 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 VLNILVIPKFAQMF 198


>gi|257793129|ref|YP_003186527.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479821|gb|ACV60138.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 287

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 14/166 (8%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVR--------SEFRRV-IETQHLGLSLSESISRMVRYM 76
           ++  GL V +A   +     D +R         EF  +    Q LGL   +++       
Sbjct: 126 ALPLGLSVLEATEDVGLAIEDILRHGKDPVIQREFEAIRARVQALGLPPEDALVEHAMQS 185

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +    + +       + G N S    ++   L+D+   ++ ++A +   +  A++ G+ 
Sbjct: 186 GVPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTAFYRYGAYVFGAG 245

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                   Y      +   +       LL  A   + +G+  M  +
Sbjct: 246 GLFGLMAFYHAYAQSLIGFVP----WALLAWA-VLVGVGVYRMARL 286


>gi|238025714|ref|YP_002909945.1| general secretion pathway protein F [Burkholderia glumae BGR1]
 gi|237874908|gb|ACR27241.1| General secretion pathway protein F [Burkholderia glumae BGR1]
          Length = 405

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 20/179 (11%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLTAGLPLGEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV- 119
            G SL+ +++   R     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLASALTEHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQRNALKQKIV 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A +     +   +G + F +S +V    P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPGIVTLIALGIVTFLLSYVV----PQVVNVFASTK--QQLPFLTIVMMALSAFV 221


>gi|134281633|ref|ZP_01768341.1| general secretion pathway protein F [Burkholderia pseudomallei 305]
 gi|134247300|gb|EBA47386.1| general secretion pathway protein F [Burkholderia pseudomallei 305]
          Length = 405

 Score = 48.5 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|15895250|ref|NP_348599.1| hypothetical protein CA_C1979 [Clostridium acetobutylicum ATCC 824]
 gi|15024960|gb|AAK79939.1|AE007702_6 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
 gi|325509396|gb|ADZ21032.1| membrane protein [Clostridium acetobutylicum EA 2018]
          Length = 317

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 65/164 (39%), Gaps = 4/164 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMV 73
           N++  ++ S+++   V + +  ++ ++++ ++   R      +    +G+ + ++    +
Sbjct: 144 NSIMFLISSLKSNAAVKNNIVFMMEETTEKLKEPLRTYNNDFVRDIRVGMPMKKAFENYI 203

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
             +    +      + + S    +  + L     ++R+    K K ++    A+ S   I
Sbjct: 204 NKVENIRLRNILKNLYICSLNNADYCKLLDKTRVVIRNYYEEKEKRKSKVKSAQISITAI 263

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 +   +   +  +  +L+N   G +L+G     +L  I 
Sbjct: 264 AFATLIILNALSKVTDNFYALLMNTTTGQVLVGYLLCVILFSIY 307


>gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 625

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 70/177 (39%), Gaps = 9/177 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQHL-GLS 64
           R +    D P A+  +  ++   + + + +  I         V  EF  ++    + G  
Sbjct: 101 RKSSIDLDLPYAITYMQ-ALSTTMTLYNVIRKIYEADDLFGEVGKEFGLIVRDVEVFGDD 159

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L  +I  + +  P + +  F   + + S  GG+++  L++ S   R+    + +    ++
Sbjct: 160 LYTAIRNLQKVTPSKNLEEFLNDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTI 219

Query: 125 EAKASAWIIGSL--PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           E  A  ++   +  P  +  ++   + G  + L        L+ +  A   IG++ +
Sbjct: 220 EVMAEVYVTAFVAGPITMIIIIVAQNLGGKSDLAGY---MPLIIIGLALGSIGMIYI 273



 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L  +V     G+ +  A+++I       +  E     E    G +   ++ RM   +
Sbjct: 406 PEFLRQLVDMKDVGVTLQTAISLISNSKLGVLSQELVMTSEDIRRGATTINALVRMEDRI 465

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEAL 102
            L  V    +++   S++   + + L
Sbjct: 466 GLVSVKRAISLLVKASEVTDYIKDVL 491


>gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 272

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 5/154 (3%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           +R         P A D++   + AG     A   + G    PV     +      LG   
Sbjct: 120 RRLEALAARQIPLAADLLTACLAAGAGPRKAAEAVGGSLGGPVGERLAQTAAELRLGAEP 179

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + +  R+     L      +  +      G    E ++ L+   R  +   A  +A    
Sbjct: 180 AHAWGRIGA---LPGAQGLARALERAGTTGAPAVEPVSRLAAECRAEQGRAAMKRADRTG 236

Query: 126 AKASAWIIGS-LPFCVSTLVYFTSPGYMNVLIND 158
              +A + G  LP  +   +     G    L+ D
Sbjct: 237 VLVNAPLAGCFLPAFLLVGLAPVMIGLARGLMGD 270


>gi|330947086|gb|EGH47866.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330948094|gb|EGH48354.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 51

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +P  ++      +P Y+  + +D  G ++L VA A  + G +V+  M+ 
Sbjct: 1   MPISMAGYFLAVNPSYLLHMWDDESGKIMLSVAFALQVTGCVVLWRMLR 49


>gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia
           intestinalis M50/1]
 gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia
           intestinalis XB6B4]
          Length = 423

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 11/147 (7%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----------SSDPVRSEFRRVIETQ 59
           A     + + +  +V  + AG+ VS A   +                 V  E +R     
Sbjct: 269 ALLELQYADMVSNLVLLLGAGMTVSKAWNRLTENYMNERQKRTICRKEVYEEMQRTSFEI 328

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118
             G+    +  R            F  +++   + G   L+  L   +    + +   A+
Sbjct: 329 KNGMGEERAYERFGERCGGYRYRKFGNLLAQNLRKGSRGLTRLLEQEAEDAFEERKSMAR 388

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
                   K    +I  L   +  L +
Sbjct: 389 KLGEEAGTKMLFPMILMLGAVMLILAF 415


>gi|312795078|ref|YP_004028000.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI
           454]
 gi|312166853|emb|CBW73856.1| Type IV pilus assembly protein tapC [Burkholderia rhizoxinica HKI
           454]
          Length = 414

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A   +   +R+GL +  A+A++   +  P++  F  V+     G +LS ++ R  R  P 
Sbjct: 81  ATRHLAMLLRSGLSLQPALALVAQHAGMPLKPLFETVLRDITEGSTLSRALQRHDRVFPA 140

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
                         +  G+L   LA L+   RDR   + 
Sbjct: 141 AYWRLVELA-----EHTGSLDTILAQLADT-RDRVAAQR 173


>gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 608

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 5   IKKRT------AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           + +R              P+A+ +I   V  G+ V  A+A    +        F R    
Sbjct: 337 VHRRRAVLSNVRAVERSLPDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRR 396

Query: 59  QH-LGLSLSESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
              L + + E+          +P   V     +++V  + G    + L  L+  L + + 
Sbjct: 397 SDTLRVDVREAFLGRGGPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRE 456

Query: 115 M----KAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           +    + ++  ++     +A +   L    +  +
Sbjct: 457 LENDARRQLATVTGTLTNTAAVFAPLVGGATVAL 490


>gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
           25986]
 gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
           25986]
          Length = 213

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 1/112 (0%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYM 76
             +D++   + AGL    A+ +        +     R      +G+ +  + +    R +
Sbjct: 75  EMIDVVRLGLSAGLSFDAALEIFCANRRSVLALRLERACMAWQVGVGTREDELLAAARDL 134

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            ++ +  F+  +     LG  L+E LA  SR +R       + +      K 
Sbjct: 135 DVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKL 186


>gi|330465239|ref|YP_004402982.1| hypothetical protein VAB18032_06290 [Verrucosispora maris
           AB-18-032]
 gi|328808210|gb|AEB42382.1| hypothetical protein VAB18032_06290 [Verrucosispora maris
           AB-18-032]
          Length = 422

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 37/201 (18%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            ++ R  +      + L  +   +RAGLPV      +  ++   VRS    V        
Sbjct: 221 RVRARRERL-----DQLCALAADLRAGLPVP-----VAAEALGLVRSV-STVRRELAASA 269

Query: 64  SLSES------------------------ISRMVRYMPLQEV--SFFSTVISVQSQLGGN 97
           +   +                        +S     +   +         + +  + G  
Sbjct: 270 TGPTARAQRPDKPVLPDPVVPGNSTSTGDLSESAGRLAAPDRPGQLAQAAVRLADRTGAP 329

Query: 98  LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           L++ +  +    R      A   A +  A+A+AW++ +LP     L Y      + VL++
Sbjct: 330 LADLIERIEADARSADRAVAAAAAQAAGARATAWLLAALPLGGIALGYGIGADPLQVLLH 389

Query: 158 DPRGHMLLGVAAAFMLIGIMV 178
            P G      A A  ++G++ 
Sbjct: 390 TPIGGACAVTAIALQVVGLLW 410


>gi|212717044|ref|ZP_03325172.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660032|gb|EEB20607.1| hypothetical protein BIFCAT_01991 [Bifidobacterium catenulatum DSM
           16992]
          Length = 258

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFR--RVIETQHLGLSLSESISRMVRYMPLQ 79
           +  SVR+G+ +  A   + G    P  + E    R+           E   +  +   ++
Sbjct: 88  LRASVRSGVTLVQAFEELGGT---PFATPELTRLRITMVIRSRCPRKEQFGQGGQSGQVE 144

Query: 80  EVSF-FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            +S        +   LG      L  ++  L+ ++ +           KA+  ++ +LP 
Sbjct: 145 RLSGELYAACRLSLTLGCETDRCLQAVAESLKRQRLLDDLRANAFAMPKATMKLLMALPL 204

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               L        +  L++  +G   LG A      G++ +R ++ 
Sbjct: 205 LTVLLGEGMGVHSLVFLVSGVKGLACLGFALCCYTFGLIWIRALMR 250


>gi|224369331|ref|YP_002603495.1| PilC [Desulfobacterium autotrophicum HRM2]
 gi|223692048|gb|ACN15331.1| PilC [Desulfobacterium autotrophicum HRM2]
          Length = 402

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+   + ++   Q +   +   +++ E+   G + +++++
Sbjct: 68  FSRQFSTMID-------AGLPLLQCLDILHAQQENVTFKKILKKIKESVESGETFADALA 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +            F+ +++   + GG L   L  LS  +     +K +V+        + 
Sbjct: 121 KFPDIFN----ELFTNMVA-AGEAGGILDIILRRLSAYMEKMAKLKKQVKGAMTYPAITL 175

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA-------AFMLIGIMVM 179
            +   +   +   V            +      LL V            +IG  ++
Sbjct: 176 AVAVIVVGIILVFVIPVFAEMFADFGSTLPAPTLLVVFLSEFVINNILYIIGAFIV 231


>gi|189424714|ref|YP_001951891.1| type II secretion system protein [Geobacter lovleyi SZ]
 gi|189420973|gb|ACD95371.1| type II secretion system protein [Geobacter lovleyi SZ]
          Length = 404

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       +GLP+   + ++  Q   P  +    RV E+   G + +++++
Sbjct: 69  FTRQFATMID-------SGLPLVQCLDILSSQQEKPAFKEILLRVKESVESGSTFADALA 121

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +         F   +    ++GG L   L  L+  +     +K +++          
Sbjct: 122 KHPKAFD----QLFVN-LVAAGEIGGILDTILNRLAAYIEKAMKLKKQIKG---AMVYPT 173

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLGVA------AAFMLIGIMV 178
            I+      V  ++ F  P     +  D  G        ++G++         ++IG   
Sbjct: 174 TIMSIAVIVVGVILVFVIPT-FAKMFADFGGELPGPTKFVIGLSNFLLKYIIVIIIGCFA 232

Query: 179 M 179
           +
Sbjct: 233 I 233


>gi|53717648|ref|YP_106634.1| general secretory pathway protein F [Burkholderia pseudomallei
           K96243]
 gi|53723931|ref|YP_104302.1| general secretion pathway protein F [Burkholderia mallei ATCC
           23344]
 gi|67641922|ref|ZP_00440687.1| general secretion pathway protein F [Burkholderia mallei GB8 horse
           4]
 gi|76810282|ref|YP_331638.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710b]
 gi|121599922|ref|YP_994794.1| general secretion pathway protein F [Burkholderia mallei SAVP1]
 gi|124385216|ref|YP_001027863.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10229]
 gi|126449176|ref|YP_001082189.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10247]
 gi|126454081|ref|YP_001064294.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106a]
 gi|167000475|ref|ZP_02266289.1| general secretion pathway protein F [Burkholderia mallei PRL-20]
 gi|167736417|ref|ZP_02409191.1| general secretion pathway protein F [Burkholderia pseudomallei 14]
 gi|167813492|ref|ZP_02445172.1| general secretion pathway protein F [Burkholderia pseudomallei 91]
 gi|167822033|ref|ZP_02453504.1| general secretion pathway protein F [Burkholderia pseudomallei 9]
 gi|167892118|ref|ZP_02479520.1| general secretion pathway protein F [Burkholderia pseudomallei
           7894]
 gi|167900629|ref|ZP_02487834.1| general secretion pathway protein F [Burkholderia pseudomallei NCTC
           13177]
 gi|167908853|ref|ZP_02495944.1| general secretion pathway protein F [Burkholderia pseudomallei 112]
 gi|167921123|ref|ZP_02508214.1| general secretion pathway protein F [Burkholderia pseudomallei
           BCC215]
 gi|217423903|ref|ZP_03455403.1| general secretion pathway protein F [Burkholderia pseudomallei 576]
 gi|226193102|ref|ZP_03788712.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814401|ref|YP_002898852.1| general secretion pathway protein F [Burkholderia pseudomallei
           MSHR346]
 gi|242314746|ref|ZP_04813762.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106b]
 gi|254174966|ref|ZP_04881627.1| general secretion pathway protein F [Burkholderia mallei ATCC
           10399]
 gi|254186540|ref|ZP_04893057.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194735|ref|ZP_04901166.1| general secretion pathway protein F [Burkholderia pseudomallei S13]
 gi|254201376|ref|ZP_04907740.1| general secretion pathway protein F [Burkholderia mallei FMH]
 gi|254206718|ref|ZP_04913069.1| general secretion pathway protein F [Burkholderia mallei JHU]
 gi|254259573|ref|ZP_04950627.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710a]
 gi|254298656|ref|ZP_04966107.1| general secretion pathway protein F [Burkholderia pseudomallei
           406e]
 gi|254357383|ref|ZP_04973657.1| general secretion pathway protein F [Burkholderia mallei
           2002721280]
 gi|52208062|emb|CAH33992.1| general secretory pathway protein F [Burkholderia pseudomallei
           K96243]
 gi|52427354|gb|AAU47947.1| general secretion pathway protein F [Burkholderia mallei ATCC
           23344]
 gi|76579735|gb|ABA49210.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710b]
 gi|121228732|gb|ABM51250.1| general secretion pathway protein F [Burkholderia mallei SAVP1]
 gi|124293236|gb|ABN02505.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10229]
 gi|126227723|gb|ABN91263.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106a]
 gi|126242046|gb|ABO05139.1| general secretion pathway protein F [Burkholderia mallei NCTC
           10247]
 gi|147747270|gb|EDK54346.1| general secretion pathway protein F [Burkholderia mallei FMH]
 gi|147752260|gb|EDK59326.1| general secretion pathway protein F [Burkholderia mallei JHU]
 gi|148026447|gb|EDK84532.1| general secretion pathway protein F [Burkholderia mallei
           2002721280]
 gi|157808490|gb|EDO85660.1| general secretion pathway protein F [Burkholderia pseudomallei
           406e]
 gi|157934225|gb|EDO89895.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696011|gb|EDP85981.1| general secretion pathway protein F [Burkholderia mallei ATCC
           10399]
 gi|169651485|gb|EDS84178.1| general secretion pathway protein F [Burkholderia pseudomallei S13]
 gi|217392966|gb|EEC32988.1| general secretion pathway protein F [Burkholderia pseudomallei 576]
 gi|225934702|gb|EEH30679.1| general secretion pathway protein F [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503308|gb|ACQ95626.1| general secretion pathway protein F [Burkholderia pseudomallei
           MSHR346]
 gi|238522937|gb|EEP86379.1| general secretion pathway protein F [Burkholderia mallei GB8 horse
           4]
 gi|242137985|gb|EES24387.1| general secretion pathway protein F [Burkholderia pseudomallei
           1106b]
 gi|243063664|gb|EES45850.1| general secretion pathway protein F [Burkholderia mallei PRL-20]
 gi|254218262|gb|EET07646.1| general secretion pathway protein F [Burkholderia pseudomallei
           1710a]
          Length = 405

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|158314421|ref|YP_001506929.1| integral membrane protein [Frankia sp. EAN1pec]
 gi|158109826|gb|ABW12023.1| integral membrane protein [Frankia sp. EAN1pec]
          Length = 302

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 52/157 (33%), Gaps = 2/157 (1%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           + A   +  A+      +   +R E   +    +    LS ++  +   +          
Sbjct: 114 LAAAAGLEQAILATAATAPAAIRGEIALLAARINRRERLSPALRGLADDLDDPLADLVIG 173

Query: 87  VISVQSQLGG-NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            + + ++     LS  L  L+   R   +M  +++      + +  ++       +  + 
Sbjct: 174 ALILAAEHQARQLSGLLGQLAATARAHVDMLGRIEVGRARMRTTMRVVVVTSIVFAGGLV 233

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +  ++    +   G ++L    A    G + +R M
Sbjct: 234 IFNRPFLAP-YSTAAGQLVLLAIGAIFAGGFVWLRRM 269


>gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 260

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 68/178 (38%), Gaps = 9/178 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG-- 62
            ++R  +  +   + +         G   ++ ++ +  +  +P+ SE   ++  +H+   
Sbjct: 78  REERIRQVREKAKDFVMAASGLYSTGQSDTEVISTMSKRLPEPLASELHEMVVQRHMNDQ 137

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILRDRKNMKAKVQ 120
           +S    + R+     + E +  S +I     +GG +++A  L  L   +R R  +  + +
Sbjct: 138 VSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVGGPVAKANGLMKLGAAIRMRSKLLLERK 197

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             ++E K ++  +  +      L                 G  LL +  AF +  I +
Sbjct: 198 KANLEPKIASMFVILVLGLGLMLDITIWRDLYQQ-----SGKFLLAIGLAFEIALIFI 250


>gi|170721363|ref|YP_001749051.1| general secretion pathway protein F [Pseudomonas putida W619]
 gi|169759366|gb|ACA72682.1| general secretion pathway protein F [Pseudomonas putida W619]
          Length = 399

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + AG P+  A+  ++     P       RV E    GL LS+++          
Sbjct: 68  QQLTTLLSAGQPLDRALGTVLKNVRRPAAKAVLERVREQVKAGLPLSQALEEHP-----G 122

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S F T +    + GG L   LA L+  L     ++ +V    +     A+++  +   
Sbjct: 123 SFSPFYTSLVRAGEAGGVLEVTLAQLAGYLEQSHKLRGEVINALI---YPAFLVIGVVGS 179

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++ L+ +  P ++ +      G  +  V  A + +G  V
Sbjct: 180 LALLLAYVVPQFVPIF--QDLGVPIPLVTRAVLAMGEFV 216


>gi|330958320|gb|EGH58580.1| general secretion pathway protein F [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 403

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 14/166 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A++  V Q+    +      V      G+ L+E+++   R     ++
Sbjct: 73  MASLLGAGLPLDEALSATVEQAERKHIIQTLGEVRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L++ +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIAAGEESGDLAQVMERLADYIEERNMLRGKILTAFIYPCVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA--------AFMLIGIMVM 179
           + V        +    D  G  L  +AA           L+GI+ M
Sbjct: 188 SYVVPQVVSAFSQARQDLPGLTLAMLAASDFIRTWGLMCLVGIVAM 233


>gi|167843646|ref|ZP_02469154.1| general secretion pathway protein F [Burkholderia pseudomallei
           B7210]
          Length = 405

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|160901134|ref|YP_001566716.1| general secretion pathway protein F [Delftia acidovorans SPH-1]
 gi|160366718|gb|ABX38331.1| general secretion pathway protein F [Delftia acidovorans SPH-1]
          Length = 408

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+A +  ++ DP +      +    + G + + ++++  R     E 
Sbjct: 78  MAGLVGSGLPIERALAALSEEADDPRQHHLVAALRAEVNAGSTFARALAQHPR-----EF 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L  R+ +++K+      A   A +       V 
Sbjct: 133 SDIYCAVIGAGEASGSLGPVLERLADDLESRQALQSKLIG---AALYPAIVTLVAIVIVL 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P   +V     R    L VA  
Sbjct: 190 FLVSYVVPQVASVFAGTKRALPWLTVAML 218


>gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1]
 gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1]
          Length = 649

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 50/112 (44%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R  +  D  P  L  +      G+ ++DA+A+    +   ++SE +R +       +L 
Sbjct: 437 RRIRQIEDQVPEFLKRLASINGTGILLADAIAITAQSNMGRLKSEIKRTVADIRWNSNLV 496

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +++ R    +         ++I+  S+  G++ + ++ ++      KN+K +
Sbjct: 497 DAMKRFEARIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKE 548



 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 8   RTAKFLDDFPNA---LDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHL- 61
           R        P+A   L ++ R    G+ + D +  +   S        EF  ++      
Sbjct: 136 RKRAINASMPHATAFLYVLQRG--GGMTIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYF 193

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L +S+       P ++       +      GG+++  L N + + +   N + K   
Sbjct: 194 GKDLQDSLWDSADRTPSEQFKDLVDGLISIVSSGGDITLYLKNKTDLYKSNANKEHKRFL 253

Query: 122 LSMEAKASAWIIGSL--PFCVSTLVYFTS 148
            ++   A  +I   +  P  +  ++   +
Sbjct: 254 ETLGLLAEVYITVFVVGPLFLMVILVVMN 282


>gi|126441326|ref|YP_001057064.1| general secretion pathway protein F [Burkholderia pseudomallei 668]
 gi|254184075|ref|ZP_04890666.1| general secretion pathway protein F [Burkholderia pseudomallei
           1655]
 gi|126220819|gb|ABN84325.1| general secretion pathway protein F [Burkholderia pseudomallei 668]
 gi|184214607|gb|EDU11650.1| general secretion pathway protein F [Burkholderia pseudomallei
           1655]
          Length = 405

 Score = 48.2 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|254445165|ref|ZP_05058641.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
 gi|198259473|gb|EDY83781.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
          Length = 390

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   + AGLP+  A+  +  Q+ DPV   FR +I      +S   + S      P + 
Sbjct: 57  QQLASMLEAGLPLVSALDALQDQTEDPV---FRIIIREVKADVSQGNNFSAACAKFP-RA 112

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +     +    +  G L+E L  ++        +  KV+           +I      V
Sbjct: 113 FNNLFISMVEAGEASGGLAEILGKVAGYFEATTKLTKKVK---SAMTYPVAVIALAIMLV 169

Query: 141 STLVYFTSPGYMNVLIN 157
           + L+ F  P + ++  +
Sbjct: 170 NVLLIFVVPTFADMFTD 186


>gi|134298672|ref|YP_001112168.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1]
 gi|134051372|gb|ABO49343.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1]
          Length = 289

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 5/174 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  KF   F  A+  +    R    + + +A +   +  PV   F  + E+   G     
Sbjct: 106 KRKKFRTLFTRAVSDMAVVARN-STILEGIAHVAENAKPPVSDIFSYISESIQKGEKDYL 164

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGG--NLSEALANLSRILRDRKNMKAKVQALSME 125
           +I +      + E+   +  + + + LGG     E L + + +++ +     KV     E
Sbjct: 165 AIIKAAEVYNVPELLPLADSVRIIADLGGGKRAPEILTSAAEMVKHQNRFIDKVNIAVSE 224

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               A I   +       +    P      ++  +  MLL      ++I  + +
Sbjct: 225 MLWDAAISMLILVACFAWLAL--PEDSVYRLSLSKHPMLLAAGFGSLIICWVFI 276


>gi|329848233|ref|ZP_08263261.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
 gi|328843296|gb|EGF92865.1| bacterial type II secretion system protein F domain protein
           [Asticcacaulis biprosthecum C19]
          Length = 403

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           D    L  +   +RAG  +  A+ V+   S   +R     V +    G SL  ++  ++ 
Sbjct: 70  DLEEFLRNLAVLLRAGADIRTALGVVGSDSHPQIRD----VSQKILGGASLDAALGHVIP 125

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWII 133
              L  +           +  G+++  L   +++L  R+ ++ ++ +ALS      A  +
Sbjct: 126 -PGLTHLRGLIAA----GEARGDVASGLDGAAQVLTTRRKIRQQLFEALSYPVFVFATAL 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            +L   +  +V   +P    +L +  R   +      F+  G+
Sbjct: 181 AALSIILLVVVPAIAP----LLSDTGRDPPVYFAIIVFLSEGL 219


>gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 298

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 10/156 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60
            K+   +F       +D++      G  V  A+              F R+ E       
Sbjct: 148 AKRARLEFTRALGAYIDLVALERNNGSGVRQAMEAAAEVGD---SWVFTRLTEELARSRW 204

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+   E++  +   + L ++  F+ ++ +  + G ++   L   S+ +R         +
Sbjct: 205 SGVPPWEALRTLAEELGLPDLEDFADIMRLSGEEGASVYTNLRARSQAMRTAMLNDELTE 264

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           A ++  + S   I +    V  +    +P  + ++ 
Sbjct: 265 ANAVGERMS---IPASLLGVVFMALLLAPSLLRMVY 297


>gi|16081952|ref|NP_394362.1| hypothetical protein Ta0903 [Thermoplasma acidophilum DSM 1728]
 gi|10640180|emb|CAC12032.1| hypothetical membrane protein [Thermoplasma acidophilum]
          Length = 238

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 10/160 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
             P+ +  +      GL +   + +I  +   P++ E  + +     G ++ E  S+ ++
Sbjct: 48  QVPSLVRDLSGYSSYGLSLYSVLRMIKNEDLGPIKEEVDKAMAMMKNGNTIEEV-SQYLQ 106

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                +++  S V+   +   G   E L  LS  + +R      V   + E      I  
Sbjct: 107 KNSSPDLALVSAVLK-NADNTGRAGETLQFLSTYMNERSTNHKNV-TQTSENYVGLVIGS 164

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            L F +  +V       ++       GH ++ +++  M++
Sbjct: 165 FLIFVLVMVV-------VDFYFLKSNGHAMVLLSSVIMMV 197


>gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
 gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
          Length = 402

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNAL---DIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVI 56
           +     KR  K     P+ L     +   + AG+P++  +  +  QS    +      + 
Sbjct: 51  LNLFKAKRKVK----LPDVLFFTRQLAAMLAAGIPLTRCLNTLSKQSENASLSDIASEMA 106

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G++LSE++            S     +    ++GG++ E L  L+  L   K ++
Sbjct: 107 RNVEAGMNLSEALKAYPEV-----FSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLR 161

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
             +++ +            +   + T V     G+    +  P 
Sbjct: 162 DSIRSATFYPATVMAFALLVVLVMLTFVVPVFAGFFPAGMELPL 205


>gi|302530825|ref|ZP_07283167.1| predicted protein [Streptomyces sp. AA4]
 gi|302439720|gb|EFL11536.1| predicted protein [Streptomyces sp. AA4]
          Length = 155

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 14/163 (8%)

Query: 23  IVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +RAG  PV+   A     +   +  E   +     L  +L  S            +
Sbjct: 1   MVSELRAGAHPVTA--AEAAADAVPELAGELHNLATAARLDGTLESS-----------AL 47

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +   ++  + G  +++AL    R +        ++ A     + SA ++  LP    
Sbjct: 48  PAVAQSWNLARRHGLPIADALEAARRDVDAEVAFIRRLHAKMAGPRMSAIVLTVLPVGCL 107

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            +        + VL     G   L   AA +  G    R + N
Sbjct: 108 AMGQLIGANPLAVLTETLIGQAFLVAGAALLWAGTAWSRALTN 150


>gi|119715365|ref|YP_922330.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536026|gb|ABL80643.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 411

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 17/173 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K +  +  A F   F   +D       AGL +  A++++  Q  +P +R   R V +   
Sbjct: 67  KRIKPRDLAVFARQFATMID-------AGLTMLRALSIMAEQVENPELRKVLRAVKQDVE 119

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS +  +  R  P          ++   + GG L  A+  ++        +++K++
Sbjct: 120 AGHSLSSAFGKWPRVFPP-----LMISMAKAGEAGGFLDTAMRQIADNFEAEVKLRSKIK 174

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           A       +     ++  C++ L++         +  D  G + L      ML
Sbjct: 175 AALTYP--TVVFFLAIIMCIALLIFVV--PVFEKMFKDLGGELPLPTKILVML 223


>gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 368

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              P A D++   + AG     A   +      PV     R      LG   + +  R+ 
Sbjct: 222 RQLPLAADLLSACIAAGAGPVLAAQAVGETLGGPVGEALARGAAEVRLGGEPAAAWHRLA 281

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               +   +  + ++      G  L+  +  L+         +A+    +      A ++
Sbjct: 282 ---SVPGAAALARLLERADVSGLPLAAPVGRLAA------EARAEWTRAATARARRAAVM 332

Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156
            S P  +  L  F + G + V+I
Sbjct: 333 VSAPVGLCFLPAFITVGVVPVVI 355


>gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena
           XCL-2]
 gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena
           XCL-2]
          Length = 404

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 33/186 (17%)

Query: 20  LDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVR 74
           L ++ R     + AG+P++DA+  +  Q+ + +   F   + E    G S +++++    
Sbjct: 67  LSLMTRQIFTLLGAGMPMADALRSVANQAENKLMKRFATGIFEKVSEGHSYAQALTSSGF 126

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-----LSMEAKAS 129
            +P      +   +    + G +L E L+ ++  +  ++ ++ K+++       M   A 
Sbjct: 127 NLP----RDYVATVRAGEESG-HLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMVVMAV 181

Query: 130 AWIIGSLPFCVSTLVYFTS------PGYMNVLINDP------RGHMLLGVAAAFMLIGIM 177
           A I+  + F V  +V          P     L+N         G +LLG       IG++
Sbjct: 182 AIILFLMAFVVPKVVSVFDNMNQNLPPLTQGLLNTSDFLDQHWGWLLLG------SIGLI 235

Query: 178 VMRLMI 183
           V+  M+
Sbjct: 236 VVYKML 241


>gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
 gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
          Length = 474

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 38  AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMPLQE-VSFFSTVISVQSQLG 95
                Q+ D +      +   + LG +   ++  +  R    +E +      + +    G
Sbjct: 136 ERAYRQTQDDIDELLDTLAREEQLGFAAGTTLGALNARRAHSRERIRELGLCLRMNETTG 195

Query: 96  GNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             L++ L   +    +  + +  +  AL+   K +  I+  LPF    + +      +  
Sbjct: 196 APLAQTLRAAAEHAEEHLDALLGRESALTGP-KTTGKILSWLPFIGLAMGWLMGTDPVGA 254

Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           L     G +         L+G      ++
Sbjct: 255 LTGSLAGLLTGFFGITLALLGRRWTARLV 283



 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIETQHLGLSLSESISRMVRY 75
            L+++   +RAGL ++ A+  +    +     +      +  T  +      +       
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDALEHITLTLTVSADWQAAWDG---- 391

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSMEAKASAWII 133
                +   + +++     G   S  L + +   R  +R+  +         AK +  ++
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAER------ASAKLAVALV 445

Query: 134 GSLPFCVSTLVY 145
             L  C      
Sbjct: 446 LPLGLCSLPAFI 457


>gi|238062254|ref|ZP_04606963.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
 gi|237884065|gb|EEP72893.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
          Length = 245

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +RAG  V  +V  +      P+     RV  T  LG    E+ S +   +P+      + 
Sbjct: 118 MRAGASVDRSVLAVADALGGPLADRLGRVGRTLLLGGGPQEAWSHL---LPVPGAERLAG 174

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
                S  G  L+ AL  L+  LR  +         +  A   A ++  LP  +  L  F
Sbjct: 175 AALRSSNSGAALAGALTRLADDLRADR------STAAEAAARRAGVLIVLPLGLCFLPAF 228

Query: 147 TSPGYMNVL 155
              G + V+
Sbjct: 229 ILAGLVPVI 237


>gi|88854702|ref|ZP_01129368.1| type IV pilus biogenesis protein PilC [marine actinobacterium
           PHSC20C1]
 gi|88815863|gb|EAR25719.1| type IV pilus biogenesis protein PilC [marine actinobacterium
           PHSC20C1]
          Length = 413

 Score = 48.2 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GL +  A+ ++  Q+ +  +      + +    G +LS++ ++     P    
Sbjct: 83  MSTMISSGLSLIRALVILSEQTENKTLAKALGEIRQDVETGGTLSDAFAKHGTVFPP--- 139

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG L +AL +++        ++  +++          ++      V 
Sbjct: 140 --IMIHLVRAGETGGFLDDALESIANNFEGEVKLRGTIKSALT---YPVVVLIMAIAAVV 194

Query: 142 TLVYFTSPGYMNVLINDPRG-HMLLGVAAAFMLIGI 176
            ++ F  P     +  D  G   LL     +M  G+
Sbjct: 195 GMLIFIVP-VFEEMFADLGGELPLLTQVLVWMSTGM 229


>gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649]
 gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649]
          Length = 302

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 10/163 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   K+  A+F       +D++      G     A+              FRR+ E   
Sbjct: 146 VRDDAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAAGGD---SWVFRRLSEELA 202

Query: 61  ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                GL+  E++  +   + L E+   + ++ +  + G  +   L   S  +R      
Sbjct: 203 RTRWSGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNT 262

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDP 159
            K +A  +  + S   I      V  L    +P  + V+   P
Sbjct: 263 EKAKANEIGERMS---IPMSLLGVIFLAILVAPALLRVMGGAP 302


>gi|167717374|ref|ZP_02400610.1| general secretion pathway protein F [Burkholderia pseudomallei
           DM98]
          Length = 352

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 8   RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 61  GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 115

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 116 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 168


>gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
 gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 12/158 (7%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-----SSDPVR---SEFRRVIE 57
           +++  + + D+P  ++ +   + AG+ V  A   +V       +    R    E ++   
Sbjct: 226 EEKKRQMMLDYPEIVNKLALFLGAGMTVKRAWRKVVEDYERHKTDGNARHAYEEMKKACY 285

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMK 116
               G+  +ES     R   +Q       ++S   + G   L+  L   S    + +  +
Sbjct: 286 EMESGVMETESYENFGRRCNVQSYIRLGALLSQNLRKGTKGLTHLLRLESIQAFEERKAR 345

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           AK        K    ++         L+    P ++++
Sbjct: 346 AKRLGEEAGTKL---LLPMFLMLAIVLIIVIVPAFLSI 380


>gi|297201341|ref|ZP_06918738.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197712796|gb|EDY56830.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 312

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 51/130 (39%)

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V+     G  +  +++   R    + +   +    V    G  L+  L  L   LR  ++
Sbjct: 178 VLAAARFGGDVPGALAAAARRPGAEGLLGLAACWRVAVDQGAGLAAGLDRLEGALRAERD 237

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +A ++A    A+++ W++ +LP     L        ++VL++   G   L V      +
Sbjct: 238 QRADLRAQLAGARSTVWMLAALPVLGLGLGAALGADPLHVLLHTGSGLGCLLVGGLLEGV 297

Query: 175 GIMVMRLMIN 184
           G+     ++ 
Sbjct: 298 GMWWATRIVR 307


>gi|197121075|ref|YP_002133026.1| type II secretion system protein [Anaeromyxobacter sp. K]
 gi|196170924|gb|ACG71897.1| type II secretion system protein [Anaeromyxobacter sp. K]
          Length = 417

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+  A+ +I  Q+     R     V      G + ++++ 
Sbjct: 83  FTRQFSVMID-------AGLPLVQALDIIATQADNAEFRKVLSTVKVKVESGSTFADALG 135

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +         F  ++    ++GG L   L  L   +   + +  +V+         A
Sbjct: 136 EHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMVYPA 187

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            ++      V+ L+ F  P     +  D  G M
Sbjct: 188 IVLTVAVGVVAVLIAFVVPT-FEKMFKDFGGAM 219


>gi|239943092|ref|ZP_04695029.1| hypothetical protein SrosN15_19016 [Streptomyces roseosporus NRRL
           15998]
 gi|239989550|ref|ZP_04710214.1| hypothetical protein SrosN1_19776 [Streptomyces roseosporus NRRL
           11379]
 gi|291446568|ref|ZP_06585958.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291349515|gb|EFE76419.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 322

 Score = 47.8 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQS---SDP---------VRSEFRRVIETQHLGLSLSESIS 70
           +   +RAG     A+   + +      P         +      V+     G  +  ++ 
Sbjct: 144 VAGELRAGREPGQALLAALREGLAEDGPATTTASGSRLGEAEAAVLAAARFGGDVPAALR 203

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +      +  +S  +    V    G  L+  L  L   LR+ +  + +++A    A ++ 
Sbjct: 204 QAAEGPGMGGLSGMAACWRVAVDGGAGLAAGLERLEAALREDRRRREELRAQLAGAWSTV 263

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     L        + VL++ P G   L V +     G+   R ++ 
Sbjct: 264 VVLALLPVAGLGLGAALGAEPLRVLLHTPGGLACLAVGSFLEAAGLCWARRIVR 317


>gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
 gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
           10642]
          Length = 634

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      +  K     P+ L  +     +GL +  A+ V+       +  E R++ +   
Sbjct: 409 LYEYRSYKLRKLEKHLPDFLRGLGSLNESGLNIVTAIKVLSATQLGVLTEEVRKIRKDIE 468

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVI 88
            G  ++E++ R    +    VS   ++I
Sbjct: 469 WGRLVTEALERFEDRVGSSLVSKVVSII 496



 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59
             + + R AK      +   +++   + G P+ +    +  +   +  V  EF  ++   
Sbjct: 125 SFIARSRKAKIDATLYHVASLMLGMAKGGTPLLELFRTVAEERHVTGEVGKEFSIIVRNV 184

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKA 117
            + G  +  SI  +    P Q++  F   ++   + G +LSE L   ++ +  +R+    
Sbjct: 185 TVFGKDIITSIKEVAATTPSQKLRDFLEDLAGVLEGGSSLSEFLEFKIAHLAEERERAYQ 244

Query: 118 -KVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
             + +  + A+    ++   P     +    +
Sbjct: 245 LYISSYEILAEIYVAMLIVAPLFSLIVFVVMN 276


>gi|229142566|ref|ZP_04271047.1| hypothetical protein bcere0013_56220 [Bacillus cereus BDRD-ST26]
 gi|228640860|gb|EEK97210.1| hypothetical protein bcere0013_56220 [Bacillus cereus BDRD-ST26]
          Length = 184

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +     + ++ E  +V      G ++  +          +E+ 
Sbjct: 14  VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFKGFNETFNFRELV 73

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 74  FFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 133

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++   S      L     G + L V
Sbjct: 134 IVIMLMSKEAYGFLAGSMMGKIALAV 159


>gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            + F          ++AG+ + +A A++  QS   P++     V      G +LS +++ 
Sbjct: 70  NEQFVVFCRQFATMIKAGISIVEATAILAEQSESKPLKKTLAEVTAELRKGNTLSGAVAA 129

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R  P      F  ++    + G ++ E L  L+         + KV+           
Sbjct: 130 YPRIFPS----IFVHMVRAGEEAG-SMEETLERLAVYFEKAHVTREKVK---SAMTYPLI 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +     F +  L+ F  P     +  +  G
Sbjct: 182 VSVMAVFVIIFLLKFMIPR-FQAMFAELGG 210


>gi|228938211|ref|ZP_04100826.1| hypothetical protein bthur0008_8790 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971089|ref|ZP_04131722.1| hypothetical protein bthur0003_8710 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788612|gb|EEM36558.1| hypothetical protein bthur0003_8710 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821444|gb|EEM67454.1| hypothetical protein bthur0008_8790 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 184

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +     + ++ E  +V      G ++  +          +E+ 
Sbjct: 14  VANALQISNNAKRVLVQVKPMMHESIQEEIEKVSLLLEGGTTMHRAFRGFNETFNFRELV 73

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 74  FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQAQRAFVQNCLIVIAMP 133

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGV 167
            ++   S      L     G + L V
Sbjct: 134 IVIMLMSKEAYGFLAGSMMGKIALAV 159


>gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC
           13032]
 gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
 gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
          Length = 258

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 75  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +        L ++     +     + G  L   +  +   +  ++      +
Sbjct: 134 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     +A+A I+  LP     +        + +L     G  LL +       G ++  
Sbjct: 190 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 249

Query: 181 LMIN 184
            ++ 
Sbjct: 250 KILQ 253


>gi|119714035|ref|YP_919177.1| integral membrane protein [Nocardioides sp. JS614]
 gi|119525944|gb|ABL79314.1| integral membrane protein [Nocardioides sp. JS614]
          Length = 297

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 3/148 (2%)

Query: 32  PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV- 90
            +  A+   +  +   +R   R ++    L   L  +++     +  +        +S+ 
Sbjct: 115 GLEQALPATLDGAPALLRRPLRNLVNALDLRTPLPVALAHFADEVDDRGADKVVIALSLT 174

Query: 91  QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
             Q  G+L   L  L+   R    M+ KV A     +  +  +      ++ L      G
Sbjct: 175 AQQRAGSLKRVLTTLASNTRAELEMRRKVLAERNGVRRQSNQVALGLLALAGLQAVFLRG 234

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++    +   G M+L V AA   +G++V
Sbjct: 235 WVEP-YSTVYGQMVLAVLAAVY-VGLLV 260


>gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
 gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
          Length = 404

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++  K  A F   F          + AG+ +   + V+  Q+++P ++     +    
Sbjct: 58  LNNVSVKDKAIFSRQF-------SVMINAGVAIVRCLGVLADQATNPKLKKALLAISAEV 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+SLSE++ +                +    + GG L E L  L+++L D   ++ ++
Sbjct: 111 QQGVSLSEALGKHEDC-----FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++          +   + F ++  +     G    L
Sbjct: 166 KSAMAYPVTVGILAVIVFFAMTIFLIPVFAGIFEDL 201


>gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 300

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    KKR A+F       LD++  S++AG   S+A+       +    +  +  I+   
Sbjct: 146 LMDKAKKRRAEFRRTLSVYLDLVAMSMQAGRGHSEALPASAAIGTGWAFTHLQDAIDGAR 205

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
             G +   ++ ++     ++E++   + +++ ++ G  +   L   +  LR
Sbjct: 206 FSGTTPWHALGQLGDRFGIRELTDLDSALTLANEDGAKVRATLVARAETLR 256


>gi|183602333|ref|ZP_02963700.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682691|ref|YP_002469074.1| type II secretion system protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190267|ref|YP_002967661.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195673|ref|YP_002969228.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218547|gb|EDT89191.1| hypothetical protein BIFLAC_00684 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620341|gb|ACL28498.1| type II secretion system protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248659|gb|ACS45599.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250227|gb|ACS47166.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793254|gb|ADG32789.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 244

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 84  FSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +   +V  +LG   +  L  + +  LR R     +  A +M  K++A ++ +LP  V  
Sbjct: 141 VAVASAVSLELGCPAARCLEAVRAGYLRARLQDDLRANAFAMP-KSTARMLLALPAVVVF 199

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           L        + +L    +G  +L +     + G++ M+ ++  D
Sbjct: 200 LGELLGADPLGMLFGSAQGRAMLCLGTICYVGGLLWMQRLLAAD 243


>gi|149917202|ref|ZP_01905702.1| type II secretion system protein [Plesiocystis pacifica SIR-1]
 gi|149822118|gb|EDM81511.1| type II secretion system protein [Plesiocystis pacifica SIR-1]
          Length = 382

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 7/164 (4%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              V AGLP+   + ++  Q+ +P       ++      G SLSE++    +        
Sbjct: 52  STMVDAGLPLVQCLDMLSSQAENPRFGEMLGKIKAEVETGKSLSEAMGLYPKVFD-DLFR 110

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                     + GG L      ++  L     ++ +V+   +   A   +   +   + T
Sbjct: 111 NLVAA----GEAGGILDLIFRRMATYLEKSAKLRRQVKGALVYPVAIIVVGLLVMVIMMT 166

Query: 143 LVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            V  T       L      G   + +A +  + G  ++  ++  
Sbjct: 167 FVLPTFEDMFKDLGAGSLPGPTRIVLAISHFITGHFLLLTIVGI 210


>gi|329947749|ref|ZP_08294766.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328523577|gb|EGF50673.1| hypothetical protein HMPREF9056_02681 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 41/100 (41%)

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
                + + LG  L++ L  ++  + +  + +A  +A     + +A ++  LP     L 
Sbjct: 21  VASCRLSTALGAPLADILEAVAGGVAESGHAEASRRAALAGPRTTARLLACLPVVGLGLG 80

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                    +L++   G  +  +    M++G +V R +I 
Sbjct: 81  MLVGADPTALLLDGGLGSAVGVLGIVLMVVGHLVTRRLIR 120


>gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
 gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
          Length = 271

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 71/176 (40%), Gaps = 1/176 (0%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           +++ R  KF       L  ++  + +G P+ +    +   +    V  EFRR++   + G
Sbjct: 87  MLRSRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLALIKIEPEVNEEFRRLVSEAYSG 146

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +I R +  +P +  +   +++     + G++++ LA     +  R+    K +  
Sbjct: 147 FDIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQ 206

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++      +++ +    +  ++   S   +  +  +P   +LL        IG + 
Sbjct: 207 ALSLMMEVYVVSAQLLPILLIILTISLAPLGSVPINPEALILLMFLIYVPAIGSVF 262


>gi|300779982|ref|ZP_07089838.1| membrane protein [Corynebacterium genitalium ATCC 33030]
 gi|300534092|gb|EFK55151.1| membrane protein [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQS----SDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           L  +V ++RAG  V++A A    Q+       + SE RRV      G S +  ++     
Sbjct: 64  LGHLVAALRAGSSVAEACARAAEQTADNAPADLASELRRVAAHTRSGGSGAAILAA---- 119

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            PL E+     +  + ++LG  +++ L +    L +    +    A     +A+A ++  
Sbjct: 120 SPLPELRDVGVLWGLSAKLGIPVADLLGSARSRLDNAVRHRNATTAALAGPRATAVVLSV 179

Query: 136 LPFCVSTL 143
           LP     +
Sbjct: 180 LPLAGILM 187


>gi|283783891|ref|YP_003363756.1| protein transport protein HofC [Citrobacter rodentium ICC168]
 gi|282947345|emb|CBG86890.1| protein transport protein HofC [Citrobacter rodentium ICC168]
          Length = 400

 Score = 47.8 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +SD + ++ GQ  D   ++    +      G  LS ++++     
Sbjct: 62  EVIQQLATLLQAGLTLSDGLWLLAGQHPDKQWQALLESLARELENGAPLSSALAQWPDIF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGS 135
           P          + +     G L+  L      L  ++  + +++    +A +    I+  
Sbjct: 122 P---------PLYLAMIRTGELTGKLDVCCSELARQQKAQKQLRDKVAKALRYPTIILTM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP---RGHMLLGVAAAFMLIGIMVM 179
               V  +++F  P +  +    N P       ++ VA      G +V+
Sbjct: 173 AVMVVLAMLHFVLPEFAAIYRTFNTPLPALTQWIIAVANGSARWGWLVI 221


>gi|86157052|ref|YP_463837.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773563|gb|ABC80400.1| type II secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 417

 Score = 47.8 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+  A+ +I  Q+ +   R     V      G + ++++ 
Sbjct: 83  FTRQFSVMID-------AGLPLVQALDIIATQADNVEFRKVLSTVKVKVESGSTFADALG 135

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +         F  ++    ++GG L   L  L   +   + +  +V+         A
Sbjct: 136 EHPKVFD----ELFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLSRRVKG---AMVYPA 187

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            ++      V  L+ F  P     +  D  G M
Sbjct: 188 IVLTVAVSVVGILIAFVVPT-FEKMFKDFGGAM 219


>gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
 gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
           574]
          Length = 409

 Score = 47.8 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R    + +           + AG+P+  A+ ++  Q+    +R     V+E    G +L+
Sbjct: 62  RKKVKIKELAVFCRQFATIIAAGIPILQALNILARQAESRRLRETITGVVEQLESGRTLA 121

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ES+ R     P    + F ++I    ++GG L +AL  L+       +++ K++      
Sbjct: 122 ESLKRYRDVFP----NIFISMIE-AGEVGGVLDKALTRLADHFEKEHDIREKIK---SAM 173

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                II      V+ L+ F  P ++ +L
Sbjct: 174 TYPVLIICLAICAVTALLTFVLPKFIQML 202


>gi|332527682|ref|ZP_08403725.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
           JA2]
 gi|332112082|gb|EGJ12058.1| general secretion pathway protein F [Rubrivivax benzoatilyticus
           JA2]
          Length = 405

 Score = 47.4 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++ D  + E    +    + G   + +++   R     E 
Sbjct: 75  LAGLVGSGLPLERALTALADEAEDQRQRELLVHLRSEVNAGSPFARALATAPR-----EF 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L++ L DR+ ++AK+    +     A +       V+
Sbjct: 130 DEVYRAVVAAGEQSGALGAVLERLAQDLEDRQALRAKLLGAML---YPAIVSLIALVIVT 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            LV +  P    V  N  +   LL V    M I   V
Sbjct: 187 FLVTYVVPQVATVFSNTKQSLPLLTV--VMMAISDFV 221


>gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured
           verrucomicrobium HF0500_16O23]
          Length = 417

 Score = 47.4 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQ 59
           ++   ++R    L D  N    +   ++AG+P++ A+ ++    S    +S   +++   
Sbjct: 64  VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIPKSVCAQLLADV 123

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +LS S+ +     P   ++          +  G++ E L  L+        ++ K+
Sbjct: 124 REGRTLSVSMGKFPEIFPDMYLNMVK-----AGESSGSMVEVLKRLADHYERFAEVRQKI 178

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                      +++G     +   + +  P +M + 
Sbjct: 179 ---ISALVYPVFVMGLGFLLIFVFMSYILPKFMTIF 211


>gi|228982961|ref|ZP_04143220.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407]
 gi|228777144|gb|EEM25452.1| Flp pilus assembly protein TadB [Bacillus thuringiensis Bt407]
          Length = 321

 Score = 47.4 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 10/190 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLP-VSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K L      +  +  P+A+D I+R + +    +   +        +P+R     +    
Sbjct: 132 IKMLAVDLMEQIEEQLPSAIDHIIR-ISSKYGDMKSIIYETARSCDNPLREILENISRKM 190

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ--LGGNLSEALANLSRILRDRKNMKA 117
             G      + +         ++     +    +        E L +L  IL     +K 
Sbjct: 191 ISG-DAETVLLQFGEEYDNVWINSLVFTLISYMEDASKTTTIENLRHLRNILEKENRLKK 249

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                +  + A  + I  L      L    +P       +   G +        +  G +
Sbjct: 250 SRVTDAKYSVAINYFIAVLASGAGLLNIVLNPKGREFFFSSFLGLICF-----LLGYGAV 304

Query: 178 VMRLMINFDV 187
           +  +M+N  +
Sbjct: 305 LGTIMLNIKM 314


>gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
           13032]
          Length = 272

 Score = 47.4 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 7/184 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 89  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 147

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +        L ++     +     + G  L   +  +   +  ++      +
Sbjct: 148 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 203

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           A     +A+A I+  LP     +        + +L     G  LL +       G ++  
Sbjct: 204 AALQGPQATAVILTVLPLAGMLMGTAMGANPLGLLTGGGIGGFLLVIGVGLDAAGFVLTH 263

Query: 181 LMIN 184
            ++ 
Sbjct: 264 KILQ 267


>gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701]
 gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701]
          Length = 466

 Score = 47.4 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +G+P+   + ++  Q   P+ R     V      G+SL  ++ R  +       
Sbjct: 135 LSALVDSGVPIVRGLTLVAKQQKKPIFRQALEAVASDVSQGVSLGVAMRRWPKV-----F 189

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +  +    +LGG L E L  L+ +L     ++ +++           I  ++   ++
Sbjct: 190 DRITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYPVIVLLIAIAVFLGMT 249

Query: 142 TLVYFTSPGYMNVL 155
             +  T       L
Sbjct: 250 IFLIPTFADIFEQL 263


>gi|83721515|ref|YP_440569.1| general secretion pathway protein F [Burkholderia thailandensis
           E264]
 gi|167582886|ref|ZP_02375760.1| general secretion pathway protein F [Burkholderia thailandensis
           TXDOH]
 gi|167621026|ref|ZP_02389657.1| general secretion pathway protein F [Burkholderia thailandensis
           Bt4]
 gi|83655340|gb|ABC39403.1| general secretion pathway protein F [Burkholderia thailandensis
           E264]
          Length = 405

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   LL +    M +   V
Sbjct: 169 LAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSDFV 221


>gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured
           Verrucomicrobiales bacterium HF4000_13K17]
          Length = 417

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 9/155 (5%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQH 60
           +   ++R    L D  N    +   ++AG+P++ A+ ++    S    +S   +++    
Sbjct: 65  RRFGQRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIPKSVCAQLLADVR 124

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +LS S+ +     P   ++          +  G++ E L  L+        ++ K+ 
Sbjct: 125 EGRTLSMSMGKFPEIFPDMYLNMVK-----AGESSGSMVEVLKRLADHYERFAEVRQKI- 178

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                     +++G     +   + +  P +M + 
Sbjct: 179 --ISALVYPMFVMGLGFLLIFVFMSYILPKFMTIF 211


>gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
 gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
          Length = 486

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEFRRV 55
           I+KR    L D+P  +  +V  + AG+ + + +  +       ++          E  R 
Sbjct: 330 IEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGKLSENYVAKLKAGQEKSFAYEELLRT 389

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKN 114
                 G S S++          Q+ +  ST++S   + G   L   L   +R  ++ + 
Sbjct: 390 TRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQNLRKGNSELLRLLNEEARKSQEDRL 449

Query: 115 MKAKVQALSMEAK 127
            +A+        K
Sbjct: 450 DRARKAGEEAGTK 462


>gi|289177984|gb|ADC85230.1| hypothetical protein BIF_00599 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 264

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 84  FSTVISVQSQLGGNLSEALANL-SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +   +V  +LG   +  L  + +  LR R     +  A +M  K++A ++ +LP  V  
Sbjct: 161 VAVASAVSLELGCPAARCLEAVRAGYLRARLQDDLRANAFAMP-KSTARMLLALPAVVVF 219

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           L        + +L    +G  +L +     + G++ M+ ++  D
Sbjct: 220 LGELLGADPLGMLFGSAQGRAMLCLGTICYVGGLLWMQRLLAAD 263


>gi|295678177|ref|YP_003606701.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
 gi|295438020|gb|ADG17190.1| general secretion pathway protein F [Burkholderia sp. CCGE1002]
          Length = 405

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A++V+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALQQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221


>gi|121593088|ref|YP_984984.1| general secretion pathway protein F [Acidovorax sp. JS42]
 gi|222109858|ref|YP_002552122.1| general secretion pathway protein f [Acidovorax ebreus TPSY]
 gi|120605168|gb|ABM40908.1| general secretion pathway protein F [Acidovorax sp. JS42]
 gi|221729302|gb|ACM32122.1| general secretion pathway protein F [Acidovorax ebreus TPSY]
          Length = 409

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++ D   R     +    + G + + ++++  R     E 
Sbjct: 79  LAGLVGSGLPLERALTALAEEADDERQRHLLAALRAEVNAGSTFARALAQHPR-----EF 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L+E L +L+  L  R+ ++AK+   ++       I   +   + 
Sbjct: 134 SDIYCAVIGAGESSGGLAEVLDSLADDLEQRQALRAKLIGAALYPAIVTVIAIVIVLFLV 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             V    P   +V     R    L VA  
Sbjct: 194 GYVV---PQVASVFAGTKRALPFLTVAML 219


>gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629]
          Length = 408

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 11/135 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSEFRR 54
            K+R  +   ++P  +  +   + +G+ V  A   I            ++  P   E   
Sbjct: 249 QKERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLV 308

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRK 113
                  G++  ++ +     + L        +I      G   + E L   S    D +
Sbjct: 309 TEREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDER 368

Query: 114 NMKAKVQALSMEAKA 128
            + A         K 
Sbjct: 369 RLLALKLGEEAGTKM 383


>gi|313681843|ref|YP_004059581.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
           16994]
 gi|313154703|gb|ADR33381.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
           16994]
          Length = 415

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 8   RTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           R  K   D+   A+  +     AG+ + D++  I   ++D  +++    + E  + G SL
Sbjct: 65  RKKKLKQDNLIAAIRQLAVMANAGISIHDSLKEIAEATTDKTLQTVLGTMAEDINAGRSL 124

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S+S           E+   S  +    +  GN++EAL  L+ +L +   ++  +      
Sbjct: 125 SQSAHNFHY-----ELGNLSLAMIELGEKTGNMAEALHKLADMLEE---IRRNIIKFKKA 176

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGY 151
                 ++ ++    + L+ +  P +
Sbjct: 177 MAYPRNVMIAMAIAFTVLISYVVPQF 202


>gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
 gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain
           protein [Rothia dentocariosa M567]
          Length = 474

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 38  AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMPLQE-VSFFSTVISVQSQLG 95
                Q+ D +      +   + LG +   ++  +  R    +E +      + +    G
Sbjct: 136 ERAYRQTQDDIDELLDTLAREEQLGFAAGTTLGALSARRAHSRERIRELGLCLRMNETTG 195

Query: 96  GNLSEALANLSRILRDRKN-MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
             L++ L   +    +  + +  +  AL+   K +  I+  LPF    + +      +  
Sbjct: 196 APLAQTLRAAAEHAEEHLDALLGRESALTGP-KTTGKILSWLPFIGLAMGWLMGTDPVGA 254

Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           L     G +         L+G      ++
Sbjct: 255 LTGSLAGLLTGFFGITLALLGRHWTARLV 283



 Score = 35.1 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 15/132 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---LGLSLSESISRMVRY 75
            L+++   +RAGL ++ A+  +       +  E R + +      L L++S         
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRA----LAHEERAISDAIEHITLTLTVSADWQAAWDG 391

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKAKVQALSMEAKASAWII 133
                +   + +++     G   S  L + +   R  +R+  +         AK +  ++
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAER------ASAKLAVALV 445

Query: 134 GSLPFCVSTLVY 145
             L  C      
Sbjct: 446 LPLGLCSLPAFI 457


>gi|161523241|ref|YP_001578253.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|189348902|ref|YP_001944530.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|221202226|ref|ZP_03575261.1| general secretion pathway protein F [Burkholderia multivorans
           CGD2M]
 gi|221208713|ref|ZP_03581712.1| general secretion pathway protein F [Burkholderia multivorans CGD2]
 gi|221214338|ref|ZP_03587310.1| general secretion pathway protein F [Burkholderia multivorans CGD1]
 gi|160340670|gb|ABX13756.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|189332924|dbj|BAG41994.1| general secretion pathway protein F [Burkholderia multivorans ATCC
           17616]
 gi|221165993|gb|EED98467.1| general secretion pathway protein F [Burkholderia multivorans CGD1]
 gi|221171345|gb|EEE03793.1| general secretion pathway protein F [Burkholderia multivorans CGD2]
 gi|221178020|gb|EEE10432.1| general secretion pathway protein F [Burkholderia multivorans
           CGD2M]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  QS  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++S+  R     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALSQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   LL +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSGFV 221


>gi|305664054|ref|YP_003860342.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
 gi|304378623|gb|ADM28462.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
          Length = 302

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 5/161 (3%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                    + + +    V  G  +  ++         P+     R +E   +G    ES
Sbjct: 89  INMLRKQVLDFIPLTSSYVATGASLLTSLEESAKIIGRPLSDYVYRYVEFVKMGRDPVES 148

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                +  P  ++    + I++    GG +SE L    R  R    ++ +++   +E   
Sbjct: 149 FDECFKIFPS-DLRAILSSIAIAITSGGRVSEMLMYADRYSRQMARLE-ELRRNRIEGYK 206

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +   +  + F +S +V       +  +     G  L+  + 
Sbjct: 207 AVIFLAIVAFIISAIVTLV---LLKTMTRIAIGTPLITGSI 244


>gi|323527883|ref|YP_004230036.1| general secretion pathway protein F [Burkholderia sp. CCGE1001]
 gi|323384885|gb|ADX56976.1| general secretion pathway protein F [Burkholderia sp. CCGE1001]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++S+  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALSQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221


>gi|282897952|ref|ZP_06305947.1| type II secretion system protein [Raphidiopsis brookii D9]
 gi|281197096|gb|EFA71997.1| type II secretion system protein [Raphidiopsis brookii D9]
          Length = 419

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 64/188 (34%), Gaps = 28/188 (14%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
            A F   F          V +G+ +  ++ +I  Q  +P ++    ++      G++LS+
Sbjct: 81  KAIFSRQF-------ATLVNSGVTIIKSLDIISPQCPNPKLKKALNQISTDIKTGINLSD 133

Query: 68  SISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           S+ +        +        +    ++GG L + L  L+++L D   ++ ++++     
Sbjct: 134 SMKK------HPDCFDALYITMVQAGEVGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYP 187

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------INDPRGHMLLGVAAAFML 173
                   ++   ++  +          +              +         V    ++
Sbjct: 188 IFVGCFAIAIALGMTIFIIPIFANVFKNMGVELPIITKILISFSQTLNSWGFLVIITLII 247

Query: 174 IGIMVMRL 181
           +G+  ++ 
Sbjct: 248 MGLFTIKQ 255


>gi|186477816|ref|YP_001859286.1| general secretion pathway protein F [Burkholderia phymatum STM815]
 gi|184194275|gb|ACC72240.1| general secretion pathway protein F [Burkholderia phymatum STM815]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A++V+  QS  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++S+  +     +       +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALSQHPK-----DFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKII 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221


>gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus
           sp. ART55/1]
          Length = 443

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRS 50
           ++ + KKR+ + + ++P  +D +   + AG+ V  A A IV    +           +  
Sbjct: 282 IQGMEKKRSDELMSEYPELVDKLTLYLGAGVTVRGAFARIVKSGREDCAGTDQGGSVLTR 341

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E    +     G+S SE+   M   + L       +++S   + G    + L  ++   +
Sbjct: 342 ELIYTLNEIQAGVSESEAYYNMGHRINLPMYIKLMSLLSQNVKKGTR--DILIMMAGEEQ 399

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +    + ++     E   +  ++  +      +V    P  +N 
Sbjct: 400 NAMQTRKEMAKRKGEEAGTKLLLPMVVLLGVVMVIVMLPAIINF 443


>gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 274

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +  + K R  KF  + P  +D+      A +P+ D   +    +    VR+   ++    
Sbjct: 116 ISSVKKDRQEKFRREMPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEY 175

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--DRKNMKA 117
            +       + R    + L E +  +  +    + G  L E L+ LS  L       +  
Sbjct: 176 IMTREKEGCLKRFCNEVNLPEANILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIAR 234

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           + +A+  +  A+ + + +    +    YFT+
Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMYPYFTN 265


>gi|254432709|ref|ZP_05046412.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
 gi|197627162|gb|EDY39721.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
          Length = 418

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+  ++ ++  Q   P+ +     V    + G+S  +S+ R  +       
Sbjct: 87  LAALVNAGVPIVRSIDLMASQQKMPLFKRALESVSLELNQGVSFGDSMRRWPKV-----F 141

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +  +    + GG L E+L  L+++L     ++ +++           +         
Sbjct: 142 DRLTIAMVEAGEAGGVLDESLRRLAKLLEANAKLQNQIKGAMA---YPLAVFTIAILVFL 198

Query: 142 TLVYFTSPGYMNVL 155
            +  F  P +  + 
Sbjct: 199 GMTIFIIPTFAKIF 212


>gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
 gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
          Length = 311

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 12/164 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-----FRRV 55
           +K    +    F       LD++  ++  G  V +A+ + V   S     E       R+
Sbjct: 149 IKRDAARMRRDFRHVVGAFLDLVAMNLAGGRGVPEALMMAVSVGSPGADDEGANWAMNRI 208

Query: 56  IETQH----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
            E       +G++  +++ ++   + + E+   S  + + +  G  +  +L   +  LR 
Sbjct: 209 REALGNARIVGITPWQALGQLGDEINVDELRDLSAALGLVADDGAKVRASLTARAATLRR 268

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           R+  + +        ++ + ++  L  C   +++ + P  M +L
Sbjct: 269 RELAEVE---GQAGERSQSMLVAQLLLCAGFVIFLSFPAAMKML 309


>gi|170694277|ref|ZP_02885431.1| general secretion pathway protein F [Burkholderia graminis C4D1M]
 gi|170140700|gb|EDT08874.1| general secretion pathway protein F [Burkholderia graminis C4D1M]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221


>gi|330815001|ref|YP_004358706.1| General secretion pathway protein F [Burkholderia gladioli BSR3]
 gi|327367394|gb|AEA58750.1| General secretion pathway protein F [Burkholderia gladioli BSR3]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 27/195 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +++AV+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLTAGLPLGESLAVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ +++   R     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLASALAEHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA---------- 170
                      I   +   V+ L+ +  P  +NV  +  +    L +             
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIVMMALSDFVRHWW 225

Query: 171 -FMLIGIMVMRLMIN 184
             MLIG++V+  ++ 
Sbjct: 226 WAMLIGVVVLAWIVK 240


>gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
           9946]
          Length = 408

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 20/166 (12%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78
           +   + AGLP+  A+A++  Q+    +  FR +I+        G S SE+++R  +    
Sbjct: 74  LATMLSAGLPIVQALAILEKQTE---KKSFRAIIKDVRTEVEGGASFSEALARHPKL--- 127

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +     +    +  GNL   L  LS  L     ++ K+++              + +
Sbjct: 128 --FNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSALTYPTIVFVFAIGVTY 185

Query: 139 CVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179
            + T +    P + N+L +      P    L+ V+      GI ++
Sbjct: 186 FLLTGIV---PQFANILTSLNAQLPPLTRFLIAVSDFLKSSGIFLL 228


>gi|187925907|ref|YP_001897549.1| general secretion pathway protein F [Burkholderia phytofirmans
           PsJN]
 gi|187717101|gb|ACD18325.1| general secretion pathway protein F [Burkholderia phytofirmans
           PsJN]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 76/195 (38%), Gaps = 27/195 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMASIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAF----- 171
                      I   +   V+ L+ +  P  +NV  +     P   +++   + F     
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWW 225

Query: 172 --MLIGIMVMRLMIN 184
             MLIG++V+  ++ 
Sbjct: 226 WAMLIGVIVLVYLVR 240


>gi|228969253|ref|ZP_04130131.1| hypothetical protein bthur0004_59740 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790446|gb|EEM38169.1| hypothetical protein bthur0004_59740 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 174

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  +++        +  +       ++ E  +V      G ++  +          +E+ 
Sbjct: 4   VANALQISNNAKRVLVQVKPMMHGSIQEEIEKVSLLLEGGTTIHRAFRGFNETFNFRELV 63

Query: 83  FFSTVISV-QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           FF  ++ V   + G N  + L +++     +K   A++++   +A+ +      +   + 
Sbjct: 64  FFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLAQAQRAFVQNCLIVIAMP 123

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            ++   S      L     G + L      +  
Sbjct: 124 IVIMMMSKEAYGFLAGSMMGKIALLANMIILFF 156


>gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
 gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
          Length = 408

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 11/135 (8%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRR 54
            K+R  +   ++P  +  +   + +G+ V  A   I  +  D          P   E   
Sbjct: 249 QKERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLV 308

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRK 113
                  G++  ++ +     + L        +I      G   + E L   S    D +
Sbjct: 309 TEREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDER 368

Query: 114 NMKAKVQALSMEAKA 128
            + A         K 
Sbjct: 369 RLLALKLGEEAGTKM 383


>gi|149174468|ref|ZP_01853094.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
 gi|148846578|gb|EDL60915.1| General secretory pathway protein F [Planctomyces maris DSM 8797]
          Length = 401

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K + +K    F +        +   V AG+PV+ A+  I  Q  +P +      + ++  
Sbjct: 58  KRVPRKEIIYFTNQ-------MAIMVDAGVPVATALEGISKQIENPVLAEILAHIQKSVE 110

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G   S +++   R      V+     +   S+  G + + L  ++    + +    +V+
Sbjct: 111 SGSDFSAALADFPRQFDRTYVN-----LIKASEASGTMPQMLNRIAAQAEEEQETIQQVK 165

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              M     A ++         L+ +  P  M + 
Sbjct: 166 GALM---YPAIMLVMCVGICIFLLTYVFPKLMPMF 197


>gi|91785779|ref|YP_560985.1| putative general secretory pathway protein F [Burkholderia
           xenovorans LB400]
 gi|91689733|gb|ABE32933.1| Putative general secretory pathway protein F [Burkholderia
           xenovorans LB400]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 76/195 (38%), Gaps = 27/195 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A++V+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAF----- 171
                      I   +   V+ L+ +  P  +NV  +     P   +++   + F     
Sbjct: 169 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRNWW 225

Query: 172 --MLIGIMVMRLMIN 184
             MLIG++V+  ++ 
Sbjct: 226 WAMLIGVVVLVYLVR 240


>gi|296157580|ref|ZP_06840415.1| general secretion pathway protein F [Burkholderia sp. Ch1-1]
 gi|295892352|gb|EFG72135.1| general secretion pathway protein F [Burkholderia sp. Ch1-1]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A++V+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQSERDYIRELMASIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALTQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTITMMALSGFV 221


>gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110]
 gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110]
          Length = 404

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++  K  A F   F          + AG+ +   + V+  Q+++P ++     +    
Sbjct: 58  LNNVSVKDKAVFSRQF-------SVMINAGVAIVRCLGVLSEQATNPKLKKALSAISAEV 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+SLSE++       P          +    + GG L E L  L+++L D   ++ ++
Sbjct: 111 QQGISLSEAL----EKHPSC-FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++          +   + F ++  +     G    L
Sbjct: 166 KSAMAYPVTVGILAVIVFFAMTIFLIPVFAGIFEDL 201


>gi|121608600|ref|YP_996407.1| general secretion pathway protein F [Verminephrobacter eiseniae
           EF01-2]
 gi|121553240|gb|ABM57389.1| general secretion pathway protein F [Verminephrobacter eiseniae
           EF01-2]
          Length = 412

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           I   V +GLP+  A+  +  ++ D  +      +    + G   + ++++  R     E 
Sbjct: 80  IAGLVSSGLPLERALTCLSQEADDERQRHLVAALRAEVNAGSMFARALAQHPR-----EF 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  GNL+  L  L+  L +R+ +KA++   ++       + G++   + 
Sbjct: 135 SDIYCAVISAGEHSGNLALVLERLADDLEERQALKAQLIGAALYPAIVTLVAGAIVLFLV 194

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V    P   +V +   R   LL  A   M +   V
Sbjct: 195 GYVV---PQVASVFVGTKRALPLLTQA--MMGLSAFV 226


>gi|114564899|ref|YP_752413.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
 gi|114336192|gb|ABI73574.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
          Length = 404

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +  D ++     + E    G  LS ++++          
Sbjct: 72  MYSLTRSGIPILRAIAGLSETTHSDRMKKALDDISEQLTSGRPLSSAMNQHPDIFDS--- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++I V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 -LFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPMFVLIAITIAMV 183

Query: 142 TLVYFTSPGYMNVL 155
            L     P + ++ 
Sbjct: 184 ILNIMVIPKFADMF 197


>gi|307731501|ref|YP_003908725.1| general secretion pathway protein F [Burkholderia sp. CCGE1003]
 gi|307586036|gb|ADN59434.1| general secretion pathway protein F [Burkholderia sp. CCGE1003]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+AV+  QS  D +R     +     
Sbjct: 61  RRLSQREQAILTRQL-------ASLLIAGLPLDEALAVLTEQSERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  +     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALAQHPK--DFPEIY---RALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +      L  +    M +   V
Sbjct: 169 LAFTYPTIVTIIAFGI---VTFLLSYVVPQVVNVFASTK--QQLPFLTIMMMALSGFV 221


>gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46]
 gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46]
          Length = 217

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           II   + +G+P+S A+      ++  +    R+      +G     +   +        +
Sbjct: 81  IIGACLSSGMPLSQAMEAAADGANPELAEPLRQCSARLAVGA--HSAWDSLAA---TPAL 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140
              +T     S+ G  L++AL + +   R + +  A+  A       +  + +  LP  V
Sbjct: 136 EPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLPAFV 195

Query: 141 STLVYFTSPGYMNVLI 156
              +  T  G  + + 
Sbjct: 196 VLGLVPTIAGLADEMF 211


>gi|254251014|ref|ZP_04944332.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
 gi|124893623|gb|EAY67503.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
          Length = 405

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  QS  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMASIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  +  R  +K K+ 
Sbjct: 114 GGHSLANALTQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLADYIEQRNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   LL +    M +   V
Sbjct: 169 LAFTYPAIVTVIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSGFV 221


>gi|313683366|ref|YP_004061104.1| type ii secretion system f domain [Sulfuricurvum kujiense DSM
           16994]
 gi|313156226|gb|ADR34904.1| Type II secretion system F domain [Sulfuricurvum kujiense DSM
           16994]
          Length = 412

 Score = 47.0 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            LD +   + AG+P++  +A  V  + DP + + F  V+     G SLS ++S+    + 
Sbjct: 77  FLDQLSVMLDAGMPINICLADTVDNTEDPMLHAIFSEVLSNIESGQSLSFALSKYQTQLG 136

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              +S F        +  G L+ A+A LS I    + +    Q L    +   +II ++ 
Sbjct: 137 KLTLSMFELG-----EQTGTLNIAIAKLSTIF---QQIHNNRQMLKKATRYPLFIIIAMS 188

Query: 138 FCVSTLVYFTSPGYMNVL 155
                ++ F  P +    
Sbjct: 189 IAFIIVITFIVPQFQTFF 206


>gi|330810078|ref|YP_004354540.1| type II secretion system protein F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378186|gb|AEA69536.1| putative type II secretion system protein F [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 403

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 17/176 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++   R   
Sbjct: 69  ATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALA--ARPRD 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E+      +    +  G+L++ +  L+  + +R N++ K+    +       +  ++ 
Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGLVSVAIV 183

Query: 138 FCVSTLVYFTS-----------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             + + V               P     ++         G     +L G      M
Sbjct: 184 IFLLSYVVPQVVSAFSQARQDLPALTVAMLTASDFIRAWGWLCFGVLAGGFWSWRM 239


>gi|227327076|ref|ZP_03831100.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 401

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 17/180 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ +A+ ++  Q   P  R   R V      G S SE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCVLRDVRTHVAQGNSFSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P+   S  +       +L G L E    L++    +  ++ KV       +   +
Sbjct: 118 YPHIFPVLYRSLIAVG-----ELTGKLDECCLQLAQQQEKQSRLQQKVIKAL---RYPCF 169

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH---MLLGVAAAFM---LIGIMVMRLMI 183
           ++         ++    P +  +    + P       LL +A        IG++V+  +I
Sbjct: 170 VLAIAIVVSMMMLTLVLPEFATLYSSFDTPLPWFTRQLLNLAGIITDYGFIGLLVLSGLI 229


>gi|330948965|gb|EGH49225.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 55

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 32/54 (59%)

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            + GGN SE + NL +++RDR+    +++A++ E + +A ++  LP  ++    
Sbjct: 2   HRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTAVVLALLPISMAGYFL 55


>gi|167560917|ref|ZP_02353833.1| general secretion pathway protein F [Burkholderia oklahomensis
           EO147]
 gi|167571807|ref|ZP_02364681.1| general secretion pathway protein F [Burkholderia oklahomensis
           C6786]
          Length = 405

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A++V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALSVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ +++   R     E+      +    +  G L   L+ L+  + +R  +K K+ 
Sbjct: 114 GGHSLAVALAEHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEERNALKQKIV 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   LL +    M +   V
Sbjct: 169 LAFTYPAIVTVIALGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSDFV 221


>gi|320324666|gb|EFW80740.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 403

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++        ++ 
Sbjct: 73  LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA-----ARSRDF 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 128 PDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|134096981|ref|YP_001102642.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006274|ref|ZP_06564247.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909604|emb|CAL99716.1| type II secretion system protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 267

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 5/187 (2%)

Query: 2   KHLIKKRTAKF----LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE 57
           +++  +R+ +       +    + ++V  +RAG   + A       S+  +   FR +  
Sbjct: 75  RYVRSRRSFRVGVERSAELSGGIRLLVAGLRAGAHPAVAAEGAAADSAPAISGVFRDLAS 134

Query: 58  TQHLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
              LG  +   +        L++ ++       +  + G  L++ L  + R +  R    
Sbjct: 135 AAKLGGDIPTVLDNGGHPAELRQPLARLGRAWRLAERHGVALADLLDAVRRDVDHRVAFI 194

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +++     +A+A ++  LP     L        + VL     G  +L V  A +  G+
Sbjct: 195 RDLESKMAGPRATAAMLAGLPLLGLLLGEAVGAAPLAVLTGQAFGQAVLVVGVALLCAGL 254

Query: 177 MVMRLMI 183
                + 
Sbjct: 255 FWTLRLT 261


>gi|289524034|ref|ZP_06440888.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502690|gb|EFD23854.1| pilin biogenesis protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 406

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F       LD       AG+ +  A+ ++  Q+ +     F   I      +    S+S 
Sbjct: 70  FFRQLATMLD-------AGITLGMALDMLAEQTEN---KRFAEAIREVKTMVDRGISLS- 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                  +E S     I+   + GG L  +L  L+  L  +  ++ K+ + S      A 
Sbjct: 119 -AAMATKREFSKLMVAIARAGEEGGVLESSLDRLATFLERQDELRKKIISAST---YPAV 174

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIN 157
           ++G     V  LV    P + ++ ++
Sbjct: 175 VMGFALMVVFILVTVIMPRFTSIFMD 200


>gi|121997134|ref|YP_001001921.1| type II secretion system protein [Halorhodospira halophila SL1]
 gi|121588539|gb|ABM61119.1| type II secretion system protein [Halorhodospira halophila SL1]
          Length = 406

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 65/180 (36%), Gaps = 19/180 (10%)

Query: 9   TAKFLDDFPN---ALDIIV-------RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIE 57
              F+         LD +V         +RAG+PV  A+  +   +++  +      V +
Sbjct: 52  LDAFIRQLSERAVTLDELVTFTRQFRALLRAGVPVVRALRGLGQNTANARLGRTLEEVAQ 111

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
               G +L +++SR  +  P         +I V  + G  L E+L  ++  L   +  + 
Sbjct: 112 GLESGQTLFDAMSRHPKTFP----RLLLAMIRVGEESG-QLEESLERMAASLDQERTTRE 166

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +++      +   +++ ++   +  +  F  P + ++          +         G +
Sbjct: 167 RIK---AALRYPTFVMIAIIAALVVINLFVIPPFADLFDGMGTDLPAMTALLIGFSEGFV 223



 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             +VR+G+P+  A+  +   + +   +   R I     G+   E + ++     L   + 
Sbjct: 280 SMAVRSGVPLLQAMDSVAEATDN---AHIARGIRDLRTGIERGEGLYQVAERSGL--FTP 334

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
               +    +  G +++ +  ++      + ++  ++      K S++I   +   +  L
Sbjct: 335 LVLQMLAVGEETGQVADMMDQVAEFYE--REVEEDLK------KLSSYIEPFVIGFIGVL 386

Query: 144 VYFTSPGYMNVLIN 157
           V   + G    +  
Sbjct: 387 VLILALGIFMPMWQ 400


>gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24]
 gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24]
          Length = 204

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L++I   + AG  +  A+ ++   +S   R   R V+    +G     +        P 
Sbjct: 68  MLELIGAMLDAGSGIGRALELVADSASPEYRHSLRPVVSALAIGADWETAWRSSEVRTP- 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137
            E+      +   +  G   S  L   +  LR  +   A+ +A ++  +    + + SLP
Sbjct: 127 -ELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAAALGVRLVVPLGLCSLP 185

Query: 138 FCVSTLV 144
             V   V
Sbjct: 186 AFVCLGV 192


>gi|32477705|ref|NP_870699.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
           1]
 gi|32448259|emb|CAD77776.1| type IV fimbrial assembly protein PilC [Rhodopirellula baltica SH
           1]
 gi|327537902|gb|EGF24602.1| Type II secretion system F domain protein [Rhodopirellula baltica
           WH47]
          Length = 479

 Score = 46.6 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 29  AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  ++ ++   Q    +++    V +    G +LSE++++  +         +  +
Sbjct: 85  AGLPILRSLKILEGNQKPGKLKNALMDVCDEIEGGSTLSEAMAKCPKVFS----RLYVNM 140

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           I    + GG L   L  L+  L   +++K KV+   +       +   +   +   +  T
Sbjct: 141 IK-AGEAGGALETILNRLADFLESAESLKRKVKGALIYPVIVVLVATLILTFIMLFIVPT 199

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +    D     +L +A +  + G   + +++  
Sbjct: 200 FEKMFDEFGLDLPAPTVLLIAMSNYIAGYWFLLILMPI 237


>gi|171913110|ref|ZP_02928580.1| type II secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 411

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
           L + +   F ++  + +D        GL +  A+ V+  +   P +R    R+ E    G
Sbjct: 66  LKRAQLILFTEELADLMDG-------GLQLEQALRVMHERQESPVLRKVSGRIREQLREG 118

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            + S+++ +                ++   ++ G+L + L  LS  +    +++++V   
Sbjct: 119 ATFSKALLQA-----SPSFDEMYCNLATAGEVSGSLPQILRRLSASITQMHDLQSRV--- 170

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                  A++ G+L   +        PG++++L
Sbjct: 171 VAALVYPAFMFGALIMLLIVFSTVLLPGFVDML 203


>gi|299065324|emb|CBJ36493.1| General Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum CMR15]
          Length = 403

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+A +  Q+  P   E    +      G SLS ++S+  R     + 
Sbjct: 73  LASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALSQHPR-----DF 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL   L+ L+  +  R  + +K++           +  ++   V 
Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ +  P  ++V  N  +    L +   ++
Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|225351275|ref|ZP_03742298.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158731|gb|EEG71973.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 174

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+  +   ++    +  R   E  + G+S  ++       
Sbjct: 42  LPLVLEMLSVAIRQGSSIPRALIAVGDIAAGEFGAGLRSAGEQLNKGVSWDDAWPD---- 97

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWII 133
               +++      +     G +  E L      L   +R  ++         AK S  ++
Sbjct: 98  --DGDLAVVRDAFASSWHSGASPVERLETAVEQLDWDERSQIEQ------AAAKLSVRLL 149

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157
             LP  +  L  F + G +  +++
Sbjct: 150 --LPTGLCFLPAFVAVGIIPAVMS 171


>gi|41615061|ref|NP_963559.1| hypothetical protein NEQ268 [Nanoarchaeum equitans Kin4-M]
 gi|40068785|gb|AAR39120.1| NEQ268 [Nanoarchaeum equitans Kin4-M]
          Length = 293

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 11/190 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQH- 60
            I +R A    + P A   +      G P   A+   + +  D   +R E + ++E    
Sbjct: 107 RIPQRKASIEKNLPYATLYMATIANTGAP-PIAIFRFLSRMPDFGEIRQEAKDIVEMVDV 165

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI----LRDRKNMK 116
           LG  L  ++ +  +Y P ++ +     +    + GG+LSE L  +S +    LR +    
Sbjct: 166 LGQDLLRALDKKAKYSPSKQWAELLIGLKTILESGGDLSEYLYRMSDLYSRELRRKVQQF 225

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +  + +E   +  I+G     + +L+     G +  +       +LLG+    + IG+
Sbjct: 226 GDLLMMVVEMYLTLVIVGGFFMIILSLIMGGMGGDIEAI--KVMHILLLGLVIPIVSIGL 283

Query: 177 -MVMRLMINF 185
             +++ M+  
Sbjct: 284 AFMIKSMLPI 293


>gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain
           protein [Butyrivibrio crossotus DSM 2876]
 gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain
           protein [Butyrivibrio crossotus DSM 2876]
          Length = 388

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 9/156 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQ 59
            +KR    + D+P  +  +   + AG+   +A   I           P        +   
Sbjct: 236 KEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFIKITEDYRKTGKTKPAYELLSECLNRI 295

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAK 118
             G++ +++     +   +        +++     G + + + L   +    + +   AK
Sbjct: 296 SSGITETDAYMEFGKRCNVMCYIKLGNLLAQNISKGTDNIFQLLKEETEKAFEDRKALAK 355

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                   K    ++         L+    P +M+ 
Sbjct: 356 KLGEEAGTKL---LLPMTMMLSVVLIIIVIPAFMSF 388


>gi|312794851|ref|YP_004027773.1| general secretion pathway protein F [Burkholderia rhizoxinica HKI
           454]
 gi|312166626|emb|CBW73629.1| General secretion pathway protein F [Burkholderia rhizoxinica HKI
           454]
          Length = 405

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 72/187 (38%), Gaps = 20/187 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A F              + AGLP+ +A+AV+  Q+  + +R     +     
Sbjct: 61  RKLSQREQALFTRQL-------ASLLIAGLPLDEALAVLTDQAEREYIRELIAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     +       +    +  G L   L+ L+  +  R  +++K+Q
Sbjct: 114 GGQSLAGALAQHPR-----DFPDIYRALVSAGEHTGKLGLVLSRLADYIEQRNALRSKIQ 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI----GI 176
                      +   +   V+ L+ +  P  ++V  +  +   LL V    +      G 
Sbjct: 169 LAFTYPAIVTLVAFGI---VTFLLSYVVPQVVSVFASTKQQLPLLTVMMMSLSSFVRHGW 225

Query: 177 MVMRLMI 183
             + L++
Sbjct: 226 WAILLIV 232


>gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
 gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
          Length = 427

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  + K+R  K            +   ++AGLP+  A  ++    S+  + +    V  +
Sbjct: 73  LTKMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAMTNLLLDVKNS 132

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SL+ S S+  +Y        F   +    + GG L   L  L+  +   + +K K
Sbjct: 133 VEQGNSLASSFSQHPKY-----FDKFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIKKK 187

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           V++          +I      +  ++ F  P +
Sbjct: 188 VKSALT---YPIAVIVVAIVLILVMMMFVLPSF 217


>gi|91787227|ref|YP_548179.1| general secretion pathway protein F [Polaromonas sp. JS666]
 gi|91696452|gb|ABE43281.1| General secretion pathway protein F [Polaromonas sp. JS666]
          Length = 410

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  ++ D  +      +    + G S + ++S         E 
Sbjct: 80  LAGLVSSGLPLERALTALTDEAEDEKQRNLVAALRAEVNGGASFARALSHHP-----GEF 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L   L  L+  L +R+ +KAK+      A   A +       V 
Sbjct: 135 SAIYIAVIGAGEQTGYLGLVLERLADDLEERQTLKAKLIG---AALYPAIVTLVAIVIVM 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P   +V     R    L VA  
Sbjct: 192 FLVGYVVPQVASVFAGTKRALPFLTVAML 220


>gi|167646053|ref|YP_001683716.1| type II secretion system protein [Caulobacter sp. K31]
 gi|167348483|gb|ABZ71218.1| type II secretion system protein [Caulobacter sp. K31]
          Length = 402

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYM 76
           NA+  +   + AGL +  A+AV V  +++P +++   +V +    G  LS +++      
Sbjct: 65  NAIGELAVLLGAGLSLDRALAVCVENATNPTLKAALAQVQKRVREGAPLSRAMTEAGGL- 123

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                S  +  +    +  G LS AL+ L   L   + ++   Q +S      A +    
Sbjct: 124 ----FSPMAAAMVEAGEADGRLSVALSRLGETLDRAEALR---QVVSSSMIYPAMLTVVT 176

Query: 137 PFCVSTLVYFTSPGYMNVLINDPR 160
              +  ++ F  P +  +  + P 
Sbjct: 177 GGVILMMLLFVVPQFEGLFADSPT 200


>gi|328949685|ref|YP_004367020.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450009|gb|AEB10910.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 399

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              V AG+P++ A+  +  +S  P +R   R V E    G SL+++++      P   + 
Sbjct: 67  ATLVAAGVPLTQALVTLAQESPSPALRQATREVRERIEAGESLADAMAHHPEVFP-PLMR 125

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                     + GG L   LA L+  L   + +  K++   M
Sbjct: 126 HLIAA----GEAGGALEVTLARLAEYLERAEELNQKIRTALM 163


>gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 562

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 45/105 (42%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E    + R  
Sbjct: 363 PIFLNDLTMAVRSGMDIIRAMQVCAKTNYGPLTKIVKKMAIQMSWGRPVNEVFEDLERTE 422

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                   ++++   +  GG++ + L +++        MK ++ A
Sbjct: 423 KSLIAKRIASILKECAVSGGDIKDILTSVTVHAYKLSEMKREISA 467


>gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
 gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
          Length = 357

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +++G+P++  + +I    ++  +    +R+      G  LS S+ +  +   
Sbjct: 20  FFRQLAVILQSGVPLAQGLILIAENMTNENLSQCVQRISSRLSAGEELSLSLRQYPKV-- 77

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                  +  +    + GG L + L  ++ +L +R  ++ ++    +       +  S+ 
Sbjct: 78  ---FEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGALVYPVIVMVLAVSVS 134

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +   +        + +
Sbjct: 135 LALLIFIVPRFKAMFDGM 152


>gi|119773598|ref|YP_926338.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B]
 gi|119766098|gb|ABL98668.1| MSHA biogenesis protein MshG [Shewanella amazonensis SB2B]
          Length = 406

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLS 66
           R    L++       +    R+G+P+  A+A +   +    ++     +      G  LS
Sbjct: 59  RRRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLS 118

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++           + F +++ V  +  G L +    LS  L   +  + +++      
Sbjct: 119 SAMNHHPEVFD----ALFVSMVHV-GENTGKLEDVFLQLSGYLEREQETRRRIK---SAV 170

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +++ ++   +  L     P + ++ 
Sbjct: 171 RYPTFVLIAISLAMVILNIMVIPKFADMF 199


>gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 274

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           +    K+R   F  + P  +D+      A +P+ D   +    +    VR+   R+    
Sbjct: 116 IHFAKKERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAESAQTKEVRNALTRLAAEY 175

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +       + R    + L E +  +  +    + G  L E L+ LS  L +    K   
Sbjct: 176 VMTREKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-EILSTLSSSLFNTATAKIAR 234

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q  +ME K  A     +   V+  +Y
Sbjct: 235 QDKAMEYKVLAATFFLMASIVTLYMY 260


>gi|17547835|ref|NP_521237.1| general secretion pathway protein F [Ralstonia solanacearum
           GMI1000]
 gi|17430140|emb|CAD16825.1| probable general secretory pathway f transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 403

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+A +  Q+  P   E    +      G SLS ++++  R     + 
Sbjct: 73  LASLLVAGLPLDEALAALADQAERPYVHELLASIRAEVVGGSSLSVALAQHPR-----DF 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL   L+ L+  +  R  + +K++           +  ++   V 
Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ +  P  ++V  N  +    L +   ++
Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
 gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
          Length = 248

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           KKR     ++ P  L+  +  +  G+PV + +  IV      ++   +  +     G+ L
Sbjct: 96  KKRLMA-DNELPAILETFISGLSVGMPVENIMRYIVENKKGYMKEIIQEALHKADAGIPL 154

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S S+         +       ++   S+    L+E L  L R + + +  +   +A  ++
Sbjct: 155 SLSLEEAAEKSLNKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRINEKTAKASVLD 214

Query: 126 AKASAWIIGSLPFCVSTLVYFTSP 149
              +  ++  + F +  +V+   P
Sbjct: 215 NVIAIPVL--IGFFIPLIVFVIFP 236


>gi|149376646|ref|ZP_01894405.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
 gi|149359019|gb|EDM47484.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
          Length = 409

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R    LD+       +    +AG+P+   +  +   +  P +      V +    G +++
Sbjct: 61  RKKITLDELIVFCRQMHALTKAGIPLIRTMRGLADTTRSPALSEVLDDVTDRLEAGSTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +  P      F  +I V  +  G L +A   LS IL   ++ K +++      
Sbjct: 121 TAMQAHPKVFP----DLFIAMIHV-GENTGQLDDAFKRLSEILELERDTKRRLKQ---AM 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +++ +L   +  + +   P +  V 
Sbjct: 173 RYPTFVVIALFGALMVVNFLVIPKFSAVF 201


>gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
 gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena
           DSM 20109]
          Length = 409

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GL +  A+A++V Q+   P+     +V     +G + S ++ +     P    
Sbjct: 79  LATMIDSGLSLLRALAILVEQTESKPLAKILSQVRNDVEVGTAFSTALGKHPETFP---- 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                ++    ++GG L + L +++        ++AK+++          I       + 
Sbjct: 135 PLMVNMVR-AGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVIAVLAVVGML 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +          L  +  G     +  + ML
Sbjct: 194 LFIVPVFAEMFAGLGGELPGPTKFLMFLSGML 225


>gi|238853651|ref|ZP_04644019.1| type II secretory pathway/competence component [Lactobacillus
           gasseri 202-4]
 gi|282851508|ref|ZP_06260873.1| type II secretion system F domain protein [Lactobacillus gasseri
           224-1]
 gi|238833689|gb|EEQ25958.1| type II secretory pathway/competence component [Lactobacillus
           gasseri 202-4]
 gi|282557476|gb|EFB63073.1| type II secretion system F domain protein [Lactobacillus gasseri
           224-1]
          Length = 326

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S    ++   + +    G  L + +  +      
Sbjct: 14  FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 67

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS+ ++ Q  +    GNL   L  LS+++R +     K++         A +IG 
Sbjct: 68  -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 119

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +  +  F      +        +++LG     ++IG   +  +I  
Sbjct: 120 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 166


>gi|303241409|ref|ZP_07327912.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302591018|gb|EFL60763.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 295

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 2/152 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +++++  +   + P  +  + +S++A   V   +      + +  + E    I     G 
Sbjct: 142 IVRQKREEIEYELPRFVSNLTQSLKATRDVPAILKSYQKSAGEKFKQEIEVTIADMKSGN 201

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               +++R+   +    +S     + +  + G N       L+   +  +  K K+ A+ 
Sbjct: 202 E-ETALTRLESRIGSAMLSDVVRGL-ISVKRGDNGVIYFEMLNHDFKQLEIQKLKLLAMK 259

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              K   +    L   +   +       M  L
Sbjct: 260 QPGKIKKYSFMMLGCFLLIYLGILGYEIMRAL 291


>gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
           16294]
          Length = 278

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIE 57
           ++  IK R  +  +D P  +D+++  +  G  +++A+  +  +    +     E  +  +
Sbjct: 119 LQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGESVLGPDLLEESKKFK 178

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
            + +  S   + + +V       ++     + +  + G  +     N ++ L+  + +  
Sbjct: 179 NEFITYSSDIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIFENQAQELKSMEMLNI 238

Query: 118 KVQALSMEAKAS-AWIIGSLPFCVSTLVYFTSPGYMNV 154
           + +A +M    +    I  LP  ++ + +  +   +  
Sbjct: 239 EKKAATMNIGITFVMFIFILPAVIAMIAFPMAADALMP 276


>gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
           DSM 5476]
 gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
           DSM 5476]
          Length = 329

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++++R  +   + P  ++ I + +RA   V + +      +   ++ E    I     G 
Sbjct: 176 IVQQRREEIEAELPRFVNTIEQELRASRDVLNILKSYQRNAGHAMKRELEITIADMASGN 235

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
               +++RM   +    +S     + +  + G N       LS   +  +  K K++A+ 
Sbjct: 236 E-ENALTRMESRIGSTMLSDVVRGL-ISVKRGDNGIMYFQMLSMTFKQLELQKLKLEAMK 293

Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147
              K   +    L   +   +   
Sbjct: 294 QPGKMRKYSFMLLGCFLLMYLGVL 317


>gi|327398636|ref|YP_004339505.1| Type II secretion system F domain-containing protein [Hippea
           maritima DSM 10411]
 gi|327181265|gb|AEA33446.1| Type II secretion system F domain protein [Hippea maritima DSM
           10411]
          Length = 401

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GLP+ +++ ++  Q+    +      V +    G SLS+++S          +
Sbjct: 70  LASMLSSGLPLDESLNIMAEQAETKKMGEVLYSVKQRVESGASLSQALSDHKDVFSPMYI 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  GNL   L  LS ++     +K K++   +       +   +   + 
Sbjct: 130 HMVN-----AGEQTGNLDGVLKRLSEMMEKHITLKRKIKGALIYPTMVTIVAVGVIALIM 184

Query: 142 TLVYFTSPGYMN 153
           T V  T     +
Sbjct: 185 TFVIPTFADMYS 196


>gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium
           SGP1]
          Length = 382

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 4   LIKKRTAKF--------LDDFPNAL--DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR 53
            +K+R  K          +    AL    +   +R+G+P+  A+ +    S DP    + 
Sbjct: 230 WMKRRGKKIAIPFMRGINEQLTLALVTSHLSTLLRSGIPLVQALRMAS--SMDPRARRWL 287

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
              E    G     ++          E       +    ++GG LS+AL+N+S   R+  
Sbjct: 288 DCAEMVKAGHRFDRAL----ERTGFPE---EIVAVVRVGEMGGELSQALSNVSGQCREIA 340

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             + +  +  ME      +  S+ F V  ++
Sbjct: 341 QSRMERLSTLMEPMMVLLLGVSVGFIVLAIL 371


>gi|288574999|ref|ZP_06393356.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570740|gb|EFC92297.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 418

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 14/165 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+AG+ +  ++ ++  Q+ +  + +   RV +    G SLS+S+ R   + P
Sbjct: 85  FFRQLATMVKAGVSLGASLDILSEQTKNKILGNGIVRVKKMVDGGNSLSQSMGRQSVFPP 144

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +      S  I    + GG+L  +L  ++  +  +  +K K+          A ++    
Sbjct: 145 M------SISIIQAGEEGGSLDVSLERVADFMERQDALKKKI---VSAVTYPAVVMAFSL 195

Query: 138 FCVSTLVYFTSPGYMNVL----INDPRGHMLLGVAAAFMLIGIMV 178
           F +  L+    P +  V     I  P     +     +M    ++
Sbjct: 196 FVLYLLITVVMPKFATVFSNLNIELPWATRTMFSFGLWMASNWVI 240


>gi|261823000|ref|YP_003261106.1| type IV pilin biogenesis protein [Pectobacterium wasabiae WPP163]
 gi|261607013|gb|ACX89499.1| Type II secretion system F domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 401

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 13/154 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ +A+ ++  Q   P  R   R +      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLEALKLVSEQHERPGWRCILRDIRTHVAQGNSLSEALHD 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
                P+   S  +          G L+  L      L  ++  ++++Q   ++A +   
Sbjct: 118 YPHIFPVLYRSLIAV---------GELTGKLDVCCLQLAQQQEKQSRLQQKVIKALRYPC 168

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162
           +++         ++    P +  +    N P   
Sbjct: 169 FVLVIAMLVSMMMLTLVLPEFATLYSSFNTPLPW 202


>gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
 gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM
           14365]
          Length = 412

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----VRSEFRRVI 56
           +  + K   A F              +RAG+P+++++  +  Q  +P    +  E R  +
Sbjct: 67  LGRVKKTEVAAFTRQL-------ATLLRAGIPLAESLGALFEQIENPKFQAIVGEVRTAV 119

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G SL++++ +  R         F +++    +L GNL E L  L+  +     ++
Sbjct: 120 NE---GSSLADALQKHPRVFD----ELFVSMVR-AGELAGNLDEVLERLAEFMESSAQLR 171

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +KVQ     A     I+  +   + +++  
Sbjct: 172 SKVQG----AMIYPVIMIVVGIAIMSILMV 197


>gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 408

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE-V 81
              + AG+ +  ++ ++  Q+ +P ++   R +      G +LS+SI       P  +  
Sbjct: 77  AALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIR------PYPDAF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++GG L E L  L+++L D   ++ +++           +         
Sbjct: 131 DGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIK---SAMTYPVVVTILAVLIFL 187

Query: 142 TLVYFTSPGYMNVLINDPRG 161
            +V F  P     + ND  G
Sbjct: 188 GMVLFILPT-FESIYNDLGG 206


>gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 413

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 8/185 (4%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   KKR  +  +D       +   ++AGLP+  A  ++    S+P      +++    
Sbjct: 62  VKSTRKKRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNP---SMTQMLMQVR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    ++ +     P +    F   +    + GG L   L  L+      + +K KV+
Sbjct: 117 ADVEQGSALGKSFSKYP-KYFDRFYCNLVSAGETGGVLEGLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMV 178
                  A   +  +L F +   V        + +  +  G   +++ ++  F+  G ++
Sbjct: 176 TALTYPIAIMVVAVALIFVMMMFVLPAFGEVYSSMGAELPGLTQIVMSMSKFFVKYGWVM 235

Query: 179 MRLMI 183
           +  +I
Sbjct: 236 IVAII 240


>gi|253689938|ref|YP_003019128.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756516|gb|ACT14592.1| type II secretion system protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 401

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGLP+ +A+ ++  Q   P  R   R V      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLHAGLPLLEALKLVSEQHERPGWRCVLRDVRTRVAQGNSLSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
                P+   S  +          G L+  L      L  ++  ++++Q   ++A +   
Sbjct: 118 YPHIFPVLYHSLIAV---------GELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYPC 168

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162
           +++         ++    P +  +    + P   
Sbjct: 169 FVLAIAVLVSMMMLTLVLPEFATLYSSFDTPLPW 202


>gi|254424300|ref|ZP_05038018.1| Bacterial type II secretion system protein F domain [Synechococcus
           sp. PCC 7335]
 gi|196191789|gb|EDX86753.1| Bacterial type II secretion system protein F domain [Synechococcus
           sp. PCC 7335]
          Length = 406

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          V +G+ +   + ++  Q  +P ++    ++      G SLSES+ 
Sbjct: 70  FSRQF-------AALVSSGVALVRGIGILSDQCPNPKLKIALMQINSDVQQGTSLSESMR 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +                +    ++GG L E L  L+++L D   ++ ++++         
Sbjct: 123 KHPD-----SFDDLYVSMVQAGEVGGVLDEVLNRLAKLLEDLNRLQNQIKSAMAYPVTVG 177

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           ++  ++   ++  +          L    P    +L   +  +    +V+ L+    V
Sbjct: 178 FLAVAIFVGLTVFLLPIFAEIFVDLGAELPIFTRVLMGISKLLRTWYLVIGLIGIITV 235


>gi|295837424|ref|ZP_06824357.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|295826519|gb|EDY42992.2| integral membrane protein [Streptomyces sp. SPB74]
          Length = 305

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 1/163 (0%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++   VRAG   ++A+A  V      +      ++     G  +  ++    R    + +
Sbjct: 134 LLAGEVRAGNRPAEALAHAVSAC-GELGHGRADILAAARFGGDVPAALRVAAREPGAEGL 192

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +    V    G  L+  L  L R L   ++ +A ++A    A+A+A ++ +LP    
Sbjct: 193 VGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLRAQLSGARATAALLAALPLLGL 252

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            L        +NVL     G + L + +A    G+     ++ 
Sbjct: 253 LLGSAVGAAPLNVLFGSVPGFVCLVLGSALEAAGVWWCLWLVR 295


>gi|225874660|ref|YP_002756119.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793983|gb|ACO34073.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
           capsulatum ATCC 51196]
          Length = 398

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F       V  ++AGLP+  +V ++     +P   ++ + V      G S+S +  
Sbjct: 62  FNQQF-------VTLIKAGLPILSSVEMLAQSQKNPHFAAQLQNVAARVRTGESISSAFD 114

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
               + P+       T   +  +  GNL E L       R     + K+QA  +      
Sbjct: 115 AQGGFPPIY------TTTLLAGERSGNLEEVLTRYLAFQRISLTFRKKLQASLIYPSMLI 168

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            ++  L      L+ F  P +   ++ D  G  L G+  A +  G
Sbjct: 169 VLVFGL---FIFLISFVVPRF--AMLYDQMGSKLPGITLALLAFG 208


>gi|312794257|ref|YP_004027180.1| type II secretion system f domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181397|gb|ADQ41567.1| Type II secretion system F domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 264

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 61/154 (39%), Gaps = 2/154 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +    +K   +F  D  + ++ +++  + GL V   +  I     + V    + +     
Sbjct: 105 LSIRTRKFKKQFKQDLLDTIETMIQGFKCGLVVEQVLEYIAESQENLVTPFIKEINLRLL 164

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL E+  ++       E      + +++S    +++E L+ L+  + + +  + +  
Sbjct: 165 AGQSLKEASLQVSSKTLSSEFERMCRIFNLRSVTISHIAETLSVLAENIYEEEKTEIETL 224

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           A  +  + +  +I    + +  L+  T P  M  
Sbjct: 225 ADKLNVRFT--LIMLAGYVIPFLILVTYPLVMMF 256


>gi|187250990|ref|YP_001875472.1| type II secretion system subunit F [Elusimicrobium minutum Pei191]
 gi|186971150|gb|ACC98135.1| Type II secretion system subunit [Elusimicrobium minutum Pei191]
          Length = 412

 Score = 46.2 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                + +   +  G+P+  A+ ++   +SDP +    +++ +    G S   ++ +  +
Sbjct: 72  LAFFAEQLSTLISGGVPLVRAITLLGEHASDPNLGYVLQQIAKDIASGSSFYTALEKHPK 131

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                        +    ++GG L+  L  ++  ++ +  +++K+  ++  +  +   I 
Sbjct: 132 -----TFDHIWLSLVQAGEVGGQLAGTLMQIAVYIKTQDAVRSKI--ITAVSYPAILFIM 184

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           S+   +  +V+   P +  +          +  A   +
Sbjct: 185 SVGVLIYFIVFIV-PTFATIFAESNMELPAITQAVLLI 221


>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 208

 Score = 45.8 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++ V  VRAGL +  A + +   + +P  + +++V     LG+    +   M    P+ 
Sbjct: 74  IELFVACVRAGLSIQQATSAVSVVAEEPTVTYWKQVNSLLALGVEPERAWVHMQ---PVP 130

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPF 138
            +   + ++ +    G  ++     L   LR            S  AKA  A +  SLP 
Sbjct: 131 GLQELARLVMMSEHSGAAIASGCQRLVDTLRAD-------ATSSAIAKAERAGVFISLPL 183

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            +  L  F   G + V+I+
Sbjct: 184 ALCFLPAFIILGLVPVVIS 202


>gi|121603665|ref|YP_980994.1| general secretion pathway protein F [Polaromonas naphthalenivorans
           CJ2]
 gi|120592634|gb|ABM36073.1| general secretion pathway protein F [Polaromonas naphthalenivorans
           CJ2]
          Length = 412

 Score = 45.8 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V +GLP+  A+  +  +S + P R     +    + G   + ++++  R     E 
Sbjct: 82  IAGLVTSGLPLERALTALADESENIPQRHLVANLRAEVNGGTPFATALAQHPR-----EF 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  GNL   L  L+  L   + +KA++      A   A +       V 
Sbjct: 137 SNTYCAVVGAGEHSGNLGMVLERLADDLEQSQELKAQLVG---AALYPAIVTLVAIAIVM 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI-----GIMVMRLMINF 185
            L+ +  P    V     R   +L V    +       G +++  +I  
Sbjct: 194 FLLGYVVPQVAQVFAGSKRALPVLTVMMLGLAGFVRNQGWLILLTLITI 242


>gi|170768577|ref|ZP_02903030.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627]
 gi|170122681|gb|EDS91612.1| type IV pilus assembly protein PilC [Escherichia albertii TW07627]
          Length = 400

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 61/185 (32%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+++A++V Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSESLALLVEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWAEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPVIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +                     +   G +L+      ++   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIITLADFSSHWGWLLILFGFLLVVANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|153003541|ref|YP_001377866.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027114|gb|ABS24882.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
          Length = 419

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+  A+ ++  QS +P  +     V      G + ++++ 
Sbjct: 85  FTRQFSVMID-------AGLPLVQALDILATQSDNPAFKKVLTAVKVRVESGSTFADALG 137

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +         F  ++    ++GG L   L  L   +   + +K +V++
Sbjct: 138 EHPKAFD----DLFVQLVR-AGEIGGILDTILQRLGAYIEKNEKLKRRVKS 183


>gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
 gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
          Length = 408

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE-V 81
              + AG+ +  ++ ++  Q+ +P ++   R +      G +LS+SI       P  +  
Sbjct: 77  AALINAGVSMVRSLTIMEEQTGNPKLKKYLRAIRAEVEAGKNLSDSIR------PYPDAF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++GG L E L  L+++L D   ++ +++           +         
Sbjct: 131 DGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIK---SAMTYPVVVTILAVLIFL 187

Query: 142 TLVYFTSPGYMNVLINDPRG 161
            +V F  P     + ND  G
Sbjct: 188 GMVLFILPT-FESIYNDLGG 206


>gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 576

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 46/105 (43%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  + + R  
Sbjct: 378 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIIKKMAIQMSWGRPVNEVFADLERTE 437

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                   ++++   +  GG++ + L +++        MK ++ A
Sbjct: 438 RSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKREISA 482


>gi|284176146|ref|YP_003406423.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
 gi|284017803|gb|ADB63750.1| hypothetical protein Htur_5119 [Haloterrigena turkmenica DSM 5511]
          Length = 604

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLS 66
            +  D   +AL I+ R V  G  V  AV +   +      + F R         +G+   
Sbjct: 380 REVEDHLTDALYIVGRQVSDGESVESAVDLAATRVPGETGAVFERAAGLQRRLQIGV--E 437

Query: 67  ESI---SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +       +  +P       + ++++ S+ G     A+ +++  L +   ++A+ +   
Sbjct: 438 SAFLGPHGALEDVPSPRARGTAALLAIASKEGKPAGRAIVSMADHLEELSEVEAETKRNL 497

Query: 124 MEAKAS--------AWIIGSLPFCVSTLVYFTS 148
            +   +        A ++  +   ++ ++   +
Sbjct: 498 AKVTGTLDATAAYFAPMVAGVTVGMAAMMASQN 530


>gi|262184094|ref|ZP_06043515.1| hypothetical protein CaurA7_08891 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 248

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 11/166 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           I   +RAG   + A+        D     +R+           G S + +++        
Sbjct: 86  IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA------- 138

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            EV  F+ ++++  + G  L+  +      L   +    +  A     +A+A I+  LP 
Sbjct: 139 PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACLPL 198

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +        +  L+    G +LL V  A +  G    RL++ 
Sbjct: 199 AGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 244


>gi|4680733|gb|AAD27751.1| XcmS [Pseudomonas putida GB-1]
          Length = 395

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59
           ++ +  +R A F          +   + AGLP+ DA+  +  ++  P  R     ++   
Sbjct: 47  LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +ALA      R R ++  + 
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISY-RQRLDLVRQK 158

Query: 120 QALSM 124
              + 
Sbjct: 159 LVGAS 163


>gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella
           australiensis 50-1 BON]
 gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis
           50-1 BON]
          Length = 250

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 57/144 (39%), Gaps = 3/144 (2%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  K  ++ P  ++++V+ +   +PV + +  I       +R   +  I+  +LG+ L
Sbjct: 97  KQRLMK-DNELPTVVNLLVQGLSVEMPVENILQYIADNKHGAMRDIIKGAIDNINLGIPL 155

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +S+         +     + +++   +    L+  L ++   + + +       +    
Sbjct: 156 EQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDVLSDMEEERL--NTKLSHVNM 213

Query: 126 AKASAWIIGSLPFCVSTLVYFTSP 149
              + + +  L + +  +V    P
Sbjct: 214 LDNALFFVVFLGYFLPLIVMILMP 237


>gi|187930467|ref|YP_001900954.1| general secretion pathway protein F [Ralstonia pickettii 12J]
 gi|187727357|gb|ACD28522.1| general secretion pathway protein F [Ralstonia pickettii 12J]
          Length = 403

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVLGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                 +  ++   V  L+ +  P  ++V  N  +    L +   ++
Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM
           6242]
 gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides
           burtonii DSM 6242]
          Length = 306

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 12/178 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSL 65
           R  K     P A++ +     AG LPV    A+   +    +  E + ++     LG +L
Sbjct: 126 RKRKIEQMLPYAINYMSAMSGAGVLPVDLFRALSNNEIYGEMCVESKYLVRDLEVLGSNL 185

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121
             ++  +    P   +  F          GG L       +       R ++    +   
Sbjct: 186 VSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYIIDNRQKQKEFLETLG 245

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG------YMNVLINDPRGHMLLGVAAAFML 173
           L  E   +A++ G L   ++  +     G      Y+ V    P G  +  V    + 
Sbjct: 246 LLGETYVTAFVAGPLFLIITIAIVSLMGGADQVFLYILVYGLIPVGSAMFLVIITLIT 303


>gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
 gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
          Length = 410

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 79  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             V          +  +  P    ++ ++  F+  G MV+
Sbjct: 194 IFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVL 233


>gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801]
 gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802]
 gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801]
 gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802]
          Length = 404

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 17/184 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++  K  A F   F          + AG+ +   + ++  Q+S+P ++     +    
Sbjct: 58  LSNVKVKDKAVFSRQF-------SVMINAGVAIVRCLGILSEQASNPKLKKALGAISAEV 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G+SLSE++ +        E+      +    ++GG L E L  LS++L D   ++ ++
Sbjct: 111 QQGVSLSEAMGKHPE--CFDELY---VSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           ++          +   + F ++  +          +  D    + +       + GIM  
Sbjct: 166 KSAMAYPVTVGVLAVLVFFGMTIFLIPV----FAKIFEDLGAELPMLTQIMLNISGIMRS 221

Query: 180 RLMI 183
             ++
Sbjct: 222 WKIL 225


>gi|150399788|ref|YP_001323555.1| hypothetical protein Mevan_1041 [Methanococcus vannielii SB]
 gi|150399793|ref|YP_001323560.1| hypothetical protein Mevan_1047 [Methanococcus vannielii SB]
 gi|150399798|ref|YP_001323565.1| hypothetical protein Mevan_1053 [Methanococcus vannielii SB]
 gi|150012491|gb|ABR54943.1| conserved hypothetical protein [Methanococcus vannielii SB]
 gi|150012496|gb|ABR54948.1| conserved hypothetical protein [Methanococcus vannielii SB]
 gi|150012501|gb|ABR54953.1| conserved hypothetical protein [Methanococcus vannielii SB]
          Length = 198

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLS 66
           +  KF  + P AL ++V S+ +G  + +A+  ++      V S F +++       LS  
Sbjct: 81  KMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLSFE 140

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA 103
           +S+  +   +  +     S +I    + GG L+  L 
Sbjct: 141 DSMMLVSNSLDSKLFRQISRLIIENRKYGGELANTLN 177


>gi|219856774|ref|YP_002473896.1| hypothetical protein CKR_3431 [Clostridium kluyveri NBRC 12016]
 gi|219570498|dbj|BAH08482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 298

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 9   TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66
                 +   AL I+  + +R+   +  AV   +   + PV   F+  +    L    + 
Sbjct: 117 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 175

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E 
Sbjct: 176 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 234

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +    I+         L+Y  +  + + L++ P G ++L ++AA + +    +  +  
Sbjct: 235 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 292


>gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens
           DSM 2228]
          Length = 414

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 13/148 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE---FRRVIETQHLGLSLSESI 69
           + +  N    +   + AG+P+  ++ +I  QS+  ++ E     +++     G +LS ++
Sbjct: 75  ISELANFAQRLSVLIAAGIPLVRSLTIIKNQSN--IKHEKEMLTQLLAKVEAGETLSSAL 132

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
               +Y P      F  +I    + GG L E LA L    R+R  +  +V+         
Sbjct: 133 EEQPKYFP----KLFVHLIR-AGETGGVLDEVLAELVDYYRNRDKINKEVK---SALYYP 184

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
             I+      V  L+ F  P  +++L  
Sbjct: 185 ITIVLVAIVAVFILMGFVLPNILDMLTG 212


>gi|320326053|gb|EFW82110.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330218|gb|EFW86203.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330880435|gb|EGH14584.1| type II secretion system protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 405

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            L+    P + +V            L V     +I    + +++ F
Sbjct: 187 ILLIKVVPQFQSVFAGFGAELPMFTLMVIGLSEVIQQWWIAIVVAF 232


>gi|317123680|ref|YP_004097792.1| type II secretion system F domain [Intrasporangium calvum DSM
           43043]
 gi|315587768|gb|ADU47065.1| Type II secretion system F domain [Intrasporangium calvum DSM
           43043]
          Length = 266

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 8/170 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLSESISRMVRY 75
           L+ +  ++ AGL  S AV +        +     R++         G  ++         
Sbjct: 81  LEGVAPALEAGLTPSVAVRLSGATLRSSIDPLTARLVAELTETSERGAHVAPVWRSWAGA 140

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              +E+ F +    +    G  L++A+      +   +    +V       +A+  ++  
Sbjct: 141 EGSEELRFVAAAWQLSEVTGAPLADAVRRAVASVHQARERARRVHVAVAGPRATVVVLTV 200

Query: 136 LPF--CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           LP    +  L     P  + +          LG+   +  +G    R ++
Sbjct: 201 LPLTGPLFGLACGVPPTELYLASPLSSAAAALGLVLIW--VGRRWCRRLV 248


>gi|77459395|ref|YP_348902.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1]
 gi|77383398|gb|ABA74911.1| general secretion pathway protein F [Pseudomonas fluorescens Pf0-1]
          Length = 403

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++   R   
Sbjct: 69  ATRQLSSLLGASLPLEAALSATVEQAEKKHIAHTLSAVRADVRSGMRLAEALA--ARPRD 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E+      +    +  G+L++ +  L+  + +R N++ K+  L+         + S+ 
Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNNLRGKI--LTAFIYPGVVGLVSIG 181

Query: 138 FCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +  L Y                PG    ++N        G   A ++ G      +
Sbjct: 182 IVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWLCAGVMAGAFWSWRL 239


>gi|312880041|ref|ZP_07739841.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
 gi|310783332|gb|EFQ23730.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
          Length = 407

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   V AG+ V+ A+ ++  Q  +  + + F RV +    G SL  S+ R   + P
Sbjct: 74  AFRQMSTMVAAGITVAGALNILEDQIQNKALAAAFTRVGKGVAAGFSLGTSLRREAAFSP 133

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           L         +    + GG L  +L  LS  L  ++ ++ KV
Sbjct: 134 LM------VALIQAGEEGGVLDLSLQRLSDFLEKQEALRRKV 169


>gi|284802133|ref|YP_003413998.1| hypothetical protein LM5578_1888 [Listeria monocytogenes 08-5578]
 gi|284995275|ref|YP_003417043.1| hypothetical protein LM5923_1840 [Listeria monocytogenes 08-5923]
 gi|284057695|gb|ADB68636.1| hypothetical protein LM5578_1888 [Listeria monocytogenes 08-5578]
 gi|284060742|gb|ADB71681.1| hypothetical protein LM5923_1840 [Listeria monocytogenes 08-5923]
          Length = 309

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 2/153 (1%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           +  AV   +   + PV   F+  I    L    +  ++  +   +  +    +   +   
Sbjct: 152 ILTAVEENINYLNPPVHHVFQDFIMRIKLVNPDIEAALKALRTKIDNEVFHEWCDALCDC 211

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            Q   +L   L  +   L D + + A+++ L  E +    I+         L+YF +  +
Sbjct: 212 -QYDRSLKATLTPIVSKLSDMRIVNAELEYLVFEPRKEFIIMAIFVMGNVPLMYFLNKSW 270

Query: 152 MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            + L++   G ++L + AA + I    +  +  
Sbjct: 271 YDTLMHTSMGQIILTITAALIFISTAFVIKLTK 303


>gi|126696027|ref|YP_001090913.1| Type II secretory pathway component PulF-like protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543070|gb|ABO17312.1| Type II secretory pathway component PulF-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 453

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R GLP+ +++ +I   S +  +R  F+ +      G ++SE + +          
Sbjct: 121 LSSMIRTGLPLLESLNIIADTSENISIRYSFKEIASGISKGSTMSEMLDKYPEV-----F 175

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L   +++L     +K ++++      A A +   + F + 
Sbjct: 176 NEMYRALVSAGETAGLLPNTLDRQAKLLESLAKIKGQIKSALAYPSAIAILTVVIVFIMM 235

Query: 142 TLVYFTSPGYMN 153
             V        +
Sbjct: 236 LFVIPIFVDIYD 247


>gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
 gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
          Length = 407

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+ + +++++ Q+ +P ++S  + V      G +LS ++ 
Sbjct: 70  FCRQFATMID-------AGLPLLNCLSILIDQTYNPKLKSAVQDVYRKVQEGETLSRALG 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +  P+         +    +LGG L E L  L+        +  KV++  +     A
Sbjct: 123 NHPQVFPV-----IMVSMVEAGELGGVLDEVLNRLAVHFEKEHKLNEKVKSALV---YPA 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +I      V+ ++ F  P +M + 
Sbjct: 175 VVIAMAALSVTFILTFVFPTFMTLF 199


>gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
 gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
          Length = 288

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 11/144 (7%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64
             +F       LD++   + A      A+              F R+ E+  +      S
Sbjct: 145 RDEFRQAVCTYLDLVALQLSAAHGPVQALERAAAVCD---GWVFDRIRESLRIAQMQMHS 201

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120
             + +  +   + + E+     ++      G  + E L + +  LRD+       +A+  
Sbjct: 202 PWDELRELADRIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAV 261

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
              ++   S  +   L F V   +
Sbjct: 262 TSRLDIPGSLLVFVLLGFAVYPFI 285


>gi|311110460|ref|ZP_07711857.1| competence protein [Lactobacillus gasseri MV-22]
 gi|311065614|gb|EFQ45954.1| competence protein [Lactobacillus gasseri MV-22]
          Length = 333

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S    ++   + +    G  L + +  +      
Sbjct: 21  FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 74

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS+ ++ Q  +    GNL   L  LS+++R +     K++         A +IG 
Sbjct: 75  -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 126

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +  +  F      +        +++LG     ++IG   +  +I  
Sbjct: 127 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 173


>gi|153956470|ref|YP_001397235.1| hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555]
 gi|146349328|gb|EDK35864.1| Hypothetical protein CKL_3887 [Clostridium kluyveri DSM 555]
          Length = 309

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 67/178 (37%), Gaps = 4/178 (2%)

Query: 9   TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66
                 +   AL I+  + +R+   +  AV   +   + PV   F+  +    L    + 
Sbjct: 128 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 186

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E 
Sbjct: 187 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 245

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +    I+         L+Y  +  + + L++ P G ++L ++AA + +    +  +  
Sbjct: 246 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFVSTACVLKLTK 303


>gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
 gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
          Length = 361

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 5/164 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           ++ +   + +G  +  A A +     D    E R +      G     + S  +R   + 
Sbjct: 46  VEQLATVISSGAGLRQAWAALGRSLPD---GELRDLARAAASGADPRRAASARLRRTEM- 101

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            ++  ST ++V  + G   +  L +L+  LRD  +     +      +++A I+  LP  
Sbjct: 102 -IASLSTALAVCERTGAPTAGMLQHLADALRDLHDAAQARRTAFAGPRSTARILLILPLA 160

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              L        + +L+    G++L     A   +G   MR ++
Sbjct: 161 GLGLGMLLGGDPLRLLLTSGAGNLLALTGLALTALGWWWMRRLV 204


>gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 275

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQ 59
           ++ + K R  KF  + P  +D+      A +P+ D   +    + S  VR+   ++    
Sbjct: 117 IQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQSAKSKEVRNAITKLAAEY 176

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            +      ++ +    + L E +  +  +    + G    + L+ LS  L +    K   
Sbjct: 177 IMTREKEVALRKFANEVSLPEANVLAMALLQGDRTG-RTVDILSTLSSSLFNTAASKVAR 235

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVY 145
           Q  SME K  + I   +   V+  +Y
Sbjct: 236 QDKSMEYKVLSAIFFLMASIVTLYIY 261


>gi|116629903|ref|YP_815075.1| Type II secretory pathway/competence component [Lactobacillus
           gasseri ATCC 33323]
 gi|116095485|gb|ABJ60637.1| Type II secretory pathway/competence component [Lactobacillus
           gasseri ATCC 33323]
          Length = 339

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S    ++   + +    G  L + +  +      
Sbjct: 27  FIDYLRQALINGYSLNASLKLLPKIWSGD-SNQLVYISKQVEEGRQLGDVLHEVG----- 80

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS+ ++ Q  +    GNL   L  LS+++R +     K++         A +IG 
Sbjct: 81  -----FSSTLAAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 132

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +  +  F      +        +++LG     ++IG   +  +I  
Sbjct: 133 MVTLLICMQTFLKTEMSDNDWTS---NVMLGGLVMLVIIGAFFISKVIRL 179


>gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1]
 gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1]
          Length = 349

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R +      PN    +     +G+ +  A+ ++       +    R++      G+   E
Sbjct: 129 RVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSEGEYGALTPHIRKLDTEMSWGVPFVE 188

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I R  + +          +I+  S  GG++SE L   +    +  N+K + +   M   
Sbjct: 189 AIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERKNGMMIYM 248

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMN 153
               +   +   V  ++  T    M 
Sbjct: 249 IIILMSFFVFLFVIGVLSGTFLTTMA 274


>gi|315106265|gb|EFT78241.1| conserved domain protein [Propionibacterium acnes HL030PA1]
          Length = 115

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +    + +  G  L+ A  +++     R  ++A + +    A+AS  I+G LP     +
Sbjct: 7   LAHAWHLAATTGAPLAPAAKSVAEGTARRARLEATLDSELAAARASGRIMGLLPLVGLLM 66

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +         L     G   L  +     +G++ 
Sbjct: 67  GHVVGAHPTVFLTTTWLGRACLLGSTLLACVGVLW 101


>gi|315501227|ref|YP_004080114.1| type ii secretion system f domain protein [Micromonospora sp. L5]
 gi|315407846|gb|ADU05963.1| Type II secretion system F domain protein [Micromonospora sp. L5]
          Length = 242

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92
           V  +V  +      P+     RV  T  LG S  E+ + +     +             S
Sbjct: 121 VDRSVLAVAEALGGPLADRLGRVGRTLRLGGSPGEAWAHLE---GVTGAEPVVAAAVRSS 177

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
             G  L+ AL  L+  LR  ++  A+    +   +A   I+  L  C       
Sbjct: 178 NSGAALARALTRLADDLRAERSTSAE----AAARRAGVLIVLPLGLCFLPAFIL 227


>gi|302864942|ref|YP_003833579.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302567801|gb|ADL44003.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 242

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92
           V  +V  +      P+     RV  T  LG S  E+ + +     +      +      S
Sbjct: 121 VDRSVLAVAEALGGPLADRLGRVGRTLRLGGSPGEAWAHLE---GVTGAEPVAAAAVRSS 177

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
             G  L+ AL  L+  LR  ++  A+    +   +A   I+  L  C       
Sbjct: 178 NSGAALARALTRLADDLRAERSTSAE----AAARRAGVLIVLPLGLCFLPAFIL 227


>gi|323702226|ref|ZP_08113892.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532716|gb|EGB22589.1| hypothetical protein DesniDRAFT_1104 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 269

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 35  DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94
            A  + +    +P + E    ++       + E++ R++       V    + + V    
Sbjct: 144 AAFKLSLEFIPEPFKGELSTALDRISRKAEVDEAMDRLIDRARHPLVDAICSRLKVSWDH 203

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                    +LS  +++   M A    +   AK++ + + ++   +  L  +  P Y  +
Sbjct: 204 RFE-PTIFDDLSDQIKEINEMAAAKATV---AKSATYAVLAIIGLIGALFIYGFPAYKVL 259

Query: 155 L 155
           +
Sbjct: 260 M 260


>gi|241664635|ref|YP_002982995.1| general secretion pathway protein F [Ralstonia pickettii 12D]
 gi|240866662|gb|ACS64323.1| general secretion pathway protein F [Ralstonia pickettii 12D]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                 +  ++   V  L+ +  P  ++V  N  +    L +   ++
Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|320328776|gb|EFW84775.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881976|gb|EGH16125.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++   R     ++
Sbjct: 73  LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|227832052|ref|YP_002833759.1| hypothetical protein cauri_0222 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453068|gb|ACP31821.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 249

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 11/166 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           I   +RAG   + A+        D     +R+           G S + +++        
Sbjct: 87  IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA------- 139

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            EV  F+ ++++  + G  L+  +      L   +    +  A     +A+A I+  LP 
Sbjct: 140 PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACLPL 199

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
               +        +  L+    G +LL V  A +  G    RL++ 
Sbjct: 200 AGILMGRAMGADSLGFLLGGGLGGVLLDVGVALVCAGFAWSRLILR 245


>gi|170728734|ref|YP_001762760.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169814081|gb|ACA88665.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 406

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS +++           
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNHHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLMAITLAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|257092074|ref|YP_003165715.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044598|gb|ACV33786.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 410

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 21/176 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG  + +A+      S+ P + S   R  +    G S S +++R          
Sbjct: 81  MQLMLRAGHTILEALEAAGRLSARPRLSSLLDRCAQRISAGSSFSAALAR-----ESSTF 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAWIIGSLPFCV 140
              +  ++   +  G L      L+ +   R +++ ++   L+  A  +   IG + F V
Sbjct: 136 PRLAVKLAEAGEASGELDAVFERLAVLTEKRADVRRQMMTALTYPAIVTLVSIGVISFLV 195

Query: 141 STLVYFTS----------PGYMNVLIN--DPRGHM--LLGVAAAFMLIGIMVMRLM 182
            ++V   +          P     ++   D  G     L +A   +++G + +R +
Sbjct: 196 GSVVPRFAVFLQARGKAVPWAARTMMEMADWLGRWGFTLVMALLGLVVGFIALRRL 251


>gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4]
 gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 194

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           LD++   +RAGLPVS A+  +   +  P+     RV +   LG     + S   
Sbjct: 55  LDLLGACLRAGLPVSAAITAMASTAPKPMADTLSRVADLLTLGADPDAAWSEAA 108


>gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei
           6A8]
 gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8]
          Length = 224

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 13/179 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHL-GLSL 65
           R        P A++ I     AG+  ++   ++           E R +     + G  L
Sbjct: 43  RRRNIDATLPYAINYITSMSTAGITPAEIFRLLGDSPIYGESSVEARYIARELDIFGRDL 102

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121
            +++  +    P   +  F          GGNL+E     +       R  + +     A
Sbjct: 103 IDALRIVSSSTPSLRMKEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTLA 162

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPG-------YMNVLINDPRGHMLLGVAAAFML 173
           L  E+  +A + G+L   +   +     G       Y+ + +  P G M+  +  + M 
Sbjct: 163 LISESYVTAMVAGTLFLIILQSIMSVLGGDSKPIFLYVVIYLMIPFGTMMFIIMISSMT 221


>gi|309780544|ref|ZP_07675291.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
 gi|308920699|gb|EFP66349.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           KR +   +        +   + AGLP+ +A+A +  Q+    V      +      G SL
Sbjct: 59  KRLSAQENAL--VTRQLASLLVAGLPLDEALAALADQAERAYVGELLAAIRAEVVGGSSL 116

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++  +     +       +    +  GNL   L+ L+  +  R  + +K++     
Sbjct: 117 SVALAQHPK-----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTY 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                 +  ++   V  L+ +  P  ++V  N  +    L +   ++
Sbjct: 172 PAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|294791162|ref|ZP_06756319.1| conserved hypothetical protein [Scardovia inopinata F0304]
 gi|294457633|gb|EFG25987.1| conserved hypothetical protein [Scardovia inopinata F0304]
          Length = 234

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSES 68
             ++  + +  +V  +R G  +  A   + G      +   +  R+++  +         
Sbjct: 61  LEENMSDIIAELVSLIRNGSSLISACEEVGGCGFAVPEITEARLRQMLLQRSSSHPKE-- 118

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
               V+ +  Q     S    + + LG   +  L  +    +  + ++ + ++     + 
Sbjct: 119 ----VKRISQQ----LSAACHLSTALGCGAASCLEAVEAEHKRNQGIEDRRRSALAVPRM 170

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +  ++  LP  +       S     VL   P G + L +AA     G+M +R +I
Sbjct: 171 TLRVLLVLPILILLAGQMASSHTFTVLFTKPVGWICLLIAALLYGAGLMWIRSLI 225


>gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090]
 gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945]
 gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02]
 gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18]
 gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140]
 gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19]
 gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11]
 gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18]
 gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1]
 gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1]
 gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332]
 gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679]
 gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035]
 gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
 gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2]
 gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
 gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
 gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
 gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
 gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
 gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
 gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
 gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
 gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae]
 gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090]
 gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945]
 gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
 gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
 gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
 gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
 gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
 gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
 gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
 gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
 gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
 gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 410

 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 79  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             V          +  +  P    ++ ++  F+  G MV+
Sbjct: 194 IFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVL 233


>gi|302387444|ref|YP_003823266.1| hypothetical protein Closa_3110 [Clostridium saccharolyticum WM1]
 gi|302198072|gb|ADL05643.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 309

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 4/168 (2%)

Query: 9   TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66
                 +   AL I+  + +R+   +  AV   +   + PV   F+  +    L    + 
Sbjct: 128 KKDIAAELETALSIVTTAYLRS-ENILTAVEENLHYLNPPVHQVFKDFVLRVKLIDPDVL 186

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+I  +   +  +    +   +        +L   L  +   L D + +  +++ L  E 
Sbjct: 187 EAIKVLRTKIDNEVFREWCDALCDCQHDR-SLKVTLTPIVSKLSDMRIVNGELEYLVFEP 245

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +    I+         L+Y  +  + + L++ P G ++L ++AA + I
Sbjct: 246 RKEFIIMVIFVIGNIPLMYLLNKSWYDTLMHTPLGQIILAISAALIFI 293


>gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
 gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas
           entomophila L48]
          Length = 295

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 5/135 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           + ++      GL V  A+ V+  +       +  E R V++    GL+L   + +  R +
Sbjct: 154 IPLLRILFETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLALGPELEKSARLL 213

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            + E+     ++      G    ++L  L  +L DR+    + +   M AK SA ++  L
Sbjct: 214 AVDELIDTCVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAVMMVFL 273

Query: 137 PFCVSTLVYFTSPGY 151
               + L+    PG+
Sbjct: 274 --FPALLIVLAGPGF 286


>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 189

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           LD++   +RAGLPVS A+  +   +  P+    RRV +   LG     + S   
Sbjct: 50  LDLLGACLRAGLPVSAAITAMASTAPKPMADSLRRVADLLALGADPDAAWSEAA 103


>gi|226349291|ref|YP_002776405.1| hypothetical membrane protein [Rhodococcus opacus B4]
 gi|226245206|dbj|BAH55553.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 291

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  S++AG  +   +  I     + +R E    I      +   ++I+R    +      
Sbjct: 109 LSSSMKAGSGIEHTI--ISTPIPEALREEITAFISRLRNNVPPVDAITRFASDLNDSVGD 166

Query: 83  FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137
                + +  Q  G  L+  L  L+  + D    R+  +A  ++   +AK    I  +  
Sbjct: 167 KICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWVTIIAITTL 226

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                   F  P             ++L +        +  M+ 
Sbjct: 227 AAAFLFTNFMEP------YKSGGMQIVLLILLTLFAADLYWMKQ 264


>gi|89098959|ref|ZP_01171839.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
 gi|89086363|gb|EAR65484.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
          Length = 401

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 21/184 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      +RAG+ V DA  ++  Q+    ++     V +    G SLS++ ++
Sbjct: 61  LQDFVIYLRQFATLLRAGVTVVDATGILSQQTESKALKKALAAVEQDLREGNSLSDAAAK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S F  +I    + GGN+ + L  L+     +   K K+ +      A   
Sbjct: 121 HKKVF----TSMFVNMIK-AGEAGGNMDDTLERLAVHYEKQHFTKQKIISALAYPIAVGI 175

Query: 132 IIGSLPFCVSTLVYFTS-----------PGYMNVLINDPRG----HMLLGVAAAFMLIGI 176
           I  ++   +   V  T            P     ++N          L+ +    + IG+
Sbjct: 176 IAVAVVIFLLVSVVPTFVEMFQDFGGELPAITQFVLNSSEFMQKYWWLVILMFVSVFIGV 235

Query: 177 MVMR 180
            V+R
Sbjct: 236 SVIR 239


>gi|149374906|ref|ZP_01892679.1| general secretion pathway protein F [Marinobacter algicola DG893]
 gi|149360795|gb|EDM49246.1| general secretion pathway protein F [Marinobacter algicola DG893]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A++    QSS P +RS    +      G SL++S+    R  P    
Sbjct: 73  LATLIQSGIPIEQALSAAAQQSSKPRIRSMLIAIRAKVMEGYSLADSLGEFPRAFP---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + + ++   +  G+L   L  L+     R+  + K+Q  ++     + +  ++   + 
Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTEARQEARQKIQLAAIYPIILSVVAIAIVVFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVA--AAFMLIGIMVMRLMINFDV 187
           T V    P  + V +   +    L  A  A    +G   + L+I   V
Sbjct: 188 TYVV---PDIIEVFVKQGQELPALTAAMLAVSDFLGDYGIYLLILIVV 232


>gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286
 gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 595

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 46/105 (43%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  + + R  
Sbjct: 397 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAIQMSWGRPVNEVFADLERTE 456

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                   ++++   +  GG++ + L +++        MK ++ A
Sbjct: 457 KSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISA 501


>gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
 gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
          Length = 410

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++    ++P  +E    I      G +LS + SR  +Y      
Sbjct: 79  LATMMKAGLPLMQAFEIVARGHANPSMTEMLMEIRSEVEQGTTLSRAFSRYPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    ++GG L   L  L+      ++++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVSAGEMGGVLESLLDKLAVYKEKTQSIRKKVKTALTYPISVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             V        + +  +       ++ ++  F+  G +++
Sbjct: 194 IFVLPAFKEVYSNMGAELPALTQAVMDISEFFVAYGWIIL 233


>gi|330989444|gb|EGH87547.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL + +A+   V Q+    +      +      G+ L+E+++   R     ++
Sbjct: 73  LASLLSAGLSLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|294139061|ref|YP_003555039.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12]
 gi|293325530|dbj|BAJ00261.1| MSHA biogenesis protein MshG [Shewanella violacea DSS12]
          Length = 406

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    +R     + E    G  LS +++           
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTAGRPLSSAMNHHQDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMVHV-GENTGKLEDAFMQLSGYIEREQETRRRIK---AAMRYPIFVLIAITIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P + ++ 
Sbjct: 185 ILNIMVIPKFADMF 198


>gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5]
 gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
           27029]
 gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5]
          Length = 287

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64
             +F       LD++   + A      ++              F R+ E   L      S
Sbjct: 144 RDEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAVCD---GWVFDRIREALRLAQLQMHS 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120
             + +  +   + + E+     ++      G  + E L + +  LRD+       +A+  
Sbjct: 201 PWDELQELAERIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGV 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
              ++   S  +   L F V   +
Sbjct: 261 TSKLDIPGSLLVFVLLGFAVYPFL 284


>gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 329

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L  +R +      PN    +     +G+ +  A+ ++       +    R++ +      
Sbjct: 107 LEGRRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLDQRISWNF 166

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +  ++I ++ + +P+  V     +++  S  GG++ E L    +         A+   + 
Sbjct: 167 AFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKD-------SAEYVVMK 219

Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147
            + K + +I   +      +  F 
Sbjct: 220 TDRKNNMFIYVIIILASFAVFLFV 243


>gi|86742017|ref|YP_482417.1| hypothetical protein Francci3_3331 [Frankia sp. CcI3]
 gi|86568879|gb|ABD12688.1| hypothetical protein Francci3_3331 [Frankia sp. CcI3]
          Length = 301

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 3/159 (1%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           + AG P+  AV          +     R+         L  +++     +    V   + 
Sbjct: 133 LDAGQPLKAAVVASCQLPPSALAGPLGRLRVRLDQ-EPLPAALAGFRAEVNHPLVGSIAA 191

Query: 87  VISVQSQLG-GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           V+S+  + G G+L+  +A      R R  +   + A     + S  ++  L       V 
Sbjct: 192 VLSLTYRRGAGDLARLMAEQVESTRHRVAVLRDLHAARARYRRSMVLLLGLFAVSVVGVL 251

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
              P  +        G  +L + A  + + +  +  +  
Sbjct: 252 AVWPAMLAP-YRTAWGQAVLIMIAGVVGLAVRTLLRLAR 289


>gi|213691074|ref|YP_002321660.1| hypothetical protein Blon_0153 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522535|gb|ACJ51282.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 217

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L+     +    +  +LG  +   L  +    R  + M+          KA+  ++ +LP
Sbjct: 107 LEAARGVTAAAVLSDELGCQVVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 166

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L      G +  LI  PRG + L +       G+  MR ++ 
Sbjct: 167 AVTVALGELLGAGPLAFLIGSPRGVVCLTLGGCCYAAGLAWMRALLK 213


>gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 463

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 14/198 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++ + KKR  +    F   L  +   +R GL    +V  +       +    R       
Sbjct: 142 LQKMAKKRKEEL---FTEFLFKLSEMMRGGLDPIKSVNELAKAEIGVLTPHIRIAANRMA 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S   ++  M R    + ++ ++ ++   S  GG +S+ +   S  +R   +++ + +
Sbjct: 199 YGDSFERAMKAMARSTGSELIARYTELVIEASYSGGGVSDLILKCSDDMRSILSIERQKE 258

Query: 121 ALSMEAKASAWIIGSLPFCVS------TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               +     +    +   +        L YFT  G  + L ++   +M        +++
Sbjct: 259 GDLKQFVLIFYFAQIIIIFICYTLTNDLLPYFTDLGSTSFLGDNEIANMDFSTGFFHLIL 318

Query: 175 -----GIMVMRLMINFDV 187
                G +++  +   DV
Sbjct: 319 INSFFGGLIIGKISEGDV 336


>gi|163751010|ref|ZP_02158242.1| MSHA biogenesis protein MshG [Shewanella benthica KT99]
 gi|161329300|gb|EDQ00298.1| MSHA biogenesis protein MshG [Shewanella benthica KT99]
          Length = 406

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   ++   +R     + E    G  LS +++           
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTNSQRMRDALDDISEQLTAGRPLSSAMNHHQDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F +++ V  +  G L +A   L+  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMVHV-GENTGKLEDAFMQLAGYIEREQETRRRIK---AAMRYPTFVLIAITIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P + ++ 
Sbjct: 185 ILNIMVIPKFADMF 198


>gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1]
 gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 196

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 31/137 (22%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL------------SLSES 68
           D++   +RAGLPV+ A   +   +  P+    RR  +   LG               +ES
Sbjct: 58  DLLAACLRAGLPVATAAQAVSRTAPAPLSESLRRAADLLSLGADAATAWEAAASDPATES 117

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           ++RM R                 +  G +L+ ++  L+        ++ +  A +   +A
Sbjct: 118 LARMARR---------------SAASGSSLAGSMTELAAD----GRIQVEHLAAAAAERA 158

Query: 129 SAWIIGSLPFCVSTLVY 145
              I G L  C      
Sbjct: 159 GVLISGPLGLCFLPAFI 175


>gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456]
 gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 621

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
             I ++  K     P     +    R GL    ++ V+  +    + +  RR+     +G
Sbjct: 383 MRIARKEKKINRSLPAFFRDLSEVRRTGLSPERSIIVLSERDYGELSNVIRRIAAALSMG 442

Query: 63  LSLSESISRMVRYMPL----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           L +  +    ++          + F    I V       +      +S ++   +N+K +
Sbjct: 443 LHVERAFRTAIKGYKSWILRVTMRFLVDAIDVGGGSPTTIDSLARFVSTLIELNENLKRR 502

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144
           ++   +     A I+         ++
Sbjct: 503 LKPFIIMPYFGAVIVAVASILTLAML 528


>gi|288918386|ref|ZP_06412739.1| type II secretion system protein [Frankia sp. EUN1f]
 gi|288350281|gb|EFC84505.1| type II secretion system protein [Frankia sp. EUN1f]
          Length = 492

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%)

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R++       +   +T   V    G  L+     L+   R       ++ A     ++S 
Sbjct: 147 RLLSRCDAGALRQLATAFRVCRLTGVRLAPVAVMLADAARSDAARADELAAALAGPRSSG 206

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            ++  LP     +        ++VL   P G + L    +  L G+  +R + +
Sbjct: 207 RLVAGLPLLGVAMGILLGAAPVDVLTTSPVGTLCLAAGVSLDLAGLRWLRRISD 260



 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +   +RAG     A+ V+   +  P   E R    +   G    E+  R+
Sbjct: 303 VSACLRAGATTQHALEVVGSATGGPAGVELRATGRSMRHGAPADEACRRL 352


>gi|330890301|gb|EGH22962.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 403

 Score = 45.5 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++   R     ++
Sbjct: 73  LASLLSAGLPLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|110667162|ref|YP_656973.1| hypothetical protein HQ1189A [Haloquadratum walsbyi DSM 16790]
 gi|109624909|emb|CAJ51319.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 611

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 8/140 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGL 63
           ++K+ A       +A  +I R V AG  V  ++      +     + F+        L +
Sbjct: 361 VRKQVADIESGLADATAVIGRRVGAGEAVETSLTAAADATIGETSTVFKTAAGVQHRLRV 420

Query: 64  SLSESIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MK 116
            + ++       +  +P       + +I V ++ G    E L  L+  LR  +      +
Sbjct: 421 DIQQAFLGPYGALSDVPSDRARATAVLIGVAAREGRPAGETLQTLADHLRTVQQTESAAR 480

Query: 117 AKVQALSMEAKASAWIIGSL 136
            ++ +++     +A + G L
Sbjct: 481 RELASITGTLSHTAALFGPL 500


>gi|213970187|ref|ZP_03398318.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato T1]
 gi|301385925|ref|ZP_07234343.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063132|ref|ZP_07254673.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134158|ref|ZP_07260148.1| type II secretion system protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925068|gb|EEB58632.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato T1]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +RS    + +    G S + ++ +   +      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRSLVNSLKQEVSAGNSFATALRQKPEHFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            L+    P + +V            L V +   +I    + +++ F
Sbjct: 187 ILLIKVVPQFQSVFAGFGAELPMFTLMVISLSEVIQQWWIAIVVAF 232


>gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium
           chlorophenolicum L-1]
          Length = 287

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
            + +FP  LD+++  + +G+ +      I    +  V         ++     G+    +
Sbjct: 135 IMAEFPFLLDLMLMMLESGVSLDQCFRSIARDEAIAVPHHARLIAMLVADLERGMRYDLA 194

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R    + +      + +       G  L+ AL    R    R+ M+A+     +  + 
Sbjct: 195 LDRWAARVAVSGARELAALFRQALFQGVELAPALREFVREFTQRRVMRAREAMGGITVRM 254

Query: 129 SAWIIGSLPFCVSTLV 144
              +I      +  ++
Sbjct: 255 VVLMILFFMPALFVVL 270


>gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus
           sp. SR1/5]
          Length = 151

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIV-------GQSSDPVRSEFRRVIETQHLGLS 64
            L D+P  +      V+AGL    A   I                 E R        G+S
Sbjct: 1   MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALS 123
            +E+  R        +    ST++    Q G   L++ L   S    + +  KA+V   +
Sbjct: 61  EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120

Query: 124 MEAK 127
              K
Sbjct: 121 AATK 124


>gi|111026114|ref|YP_708397.1| hypothetical protein RHA1_ro10046 [Rhodococcus jostii RHA1]
 gi|110824957|gb|ABH00239.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 291

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 13/164 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +  S++AG  +   +  I     + +R E    I      +   ++I+R    +      
Sbjct: 109 LSSSMKAGSGIEHTI--ISTPIPEALREEITAFISRLRNNVPPVDAITRFASDLNDSVGD 166

Query: 83  FFSTVISVQSQ-LGGNLSEALANLSRILRD----RKNMKAKVQALSMEAKASAWIIGSLP 137
                + +  Q  G  L+  L  L+  + D    R+  +A  ++   +AK    I  +  
Sbjct: 167 KICGALLLSMQLRGVGLAAVLEGLAEDVGDMVARRRRTEADRKSSRTQAKWVTIIAITTL 226

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
                   F  P             ++L +        +  M+ 
Sbjct: 227 AAAFLFTNFMEP------YKSGGMQIVLLILLTLFAADLYWMKQ 264


>gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M6190]
 gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis ES14902]
          Length = 410

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 79  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177
             V          +                     G M+L +A  F + G +
Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244


>gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
 gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18]
 gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
 gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491]
 gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
 gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
 gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18]
 gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491]
 gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
 gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
 gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153]
 gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275]
 gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013]
 gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710]
 gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76]
 gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE
           2594]
 gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis N1568]
 gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M13399]
 gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M0579]
 gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis CU385]
 gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240013]
 gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis H44/76]
 gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240149]
 gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis NZ-05/33]
          Length = 410

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 79  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177
             V          +                     G M+L +A  F + G +
Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244


>gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis 961-5945]
          Length = 402

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 71  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 126 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 185

Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177
             V          +                     G M+L +A  F + G +
Sbjct: 186 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 236


>gi|325964626|ref|YP_004242532.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470713|gb|ADX74398.1| hypothetical protein Asphe3_32910 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 265

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 62  GLSLSESISR-MVRYMPLQEVSF-----FSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           G  +SE++ R +    P ++         +    +    G  L++ L   +  L    + 
Sbjct: 129 GTPVSEAMRRALPSAFPRRDRECRIWAELAACFDIAEASGCPLADVLTRFAAQLEVEDDA 188

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            A  Q      KA+  ++  LP     L        +++L+  P G   L       + G
Sbjct: 189 DAARQTALAGPKATVSLLTWLPLMGLGLGIALGVDPLSILLGTPWGLAALAAGFGLTVAG 248

Query: 176 IMVMRLM 182
            +    +
Sbjct: 249 RLWSARL 255


>gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 401

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 11/173 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR      +     D +   + AG P+  A+A+   QS  P + S    ++E    G SL
Sbjct: 56  KRKKISDAEVARFTDQLAILLEAGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++         +  S F   +    +  G L E L+ L+  L   + M+     L   
Sbjct: 116 SVAMG-----AEHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMR---SDLISA 167

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
               A+++  +   +  L+ +  P ++ +  +      L+      M +GI +
Sbjct: 168 LIYPAFLVCGVFGSLVLLLTYVVPQFVPIFRDLNVPLPLITECI--MALGIFL 218


>gi|260771242|ref|ZP_05880169.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
 gi|260613839|gb|EEX39031.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
          Length = 408

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   +V +    G  +S+++            
Sbjct: 77  LSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAM-----RTASPHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL+E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVMLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|256397693|ref|YP_003119257.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256363919|gb|ACU77416.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 283

 Score = 45.1 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 1/138 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL-SLSESISRMVRYMP 77
            LD+ V ++ AG  V  A+         P     R  ++   L    + +  + +   + 
Sbjct: 146 FLDVTVNALAAGTGVEQALGGASEIGDSPAFERLRHALDVAFLSRLPIHQVFAELGTTLG 205

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++  +  + +    G  +  +LA  +  +R +     + +A +   + +  I   + 
Sbjct: 206 LAEITDLAASLQLAGAEGAKIRTSLAAKAEAIRAKILADEEAEAAATTERMTVPIALLMT 265

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +  + Y      ++ L
Sbjct: 266 GFLVLIGYPAMASALSAL 283


>gi|315179152|gb|ADT86066.1| type IV pilin biogenesis protein PilC [Vibrio furnissii NCTC 11218]
          Length = 408

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   +V +    G  +S+++            
Sbjct: 77  LSTMLTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAM-----RTASPHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL+E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVMLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|257485210|ref|ZP_05639251.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010891|gb|EGH90947.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 403

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++   R     ++
Sbjct: 73  LASLLSAGLPLDEALGATVEQAERQHIIQTLSAIRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIGAGEESGDLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|182413437|ref|YP_001818503.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177840651|gb|ACB74903.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 417

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61
            L ++R        P  L+ +     +G+   +AV ++  +  +P +R+    + E    
Sbjct: 66  RLERRRNVARAQRLP-FLESLHDLTTSGMSAGEAVRLLSTRIKEPALRALCSALWERLSE 124

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           G  LS ++S          V+     +    +  G+L+E L  L   L +++ ++ ++
Sbjct: 125 GAPLSRAMSDFPAVFDAATVN-----LIQAGEATGSLNETLDRLITHLNEQRELRRQL 177


>gi|75992384|dbj|BAE45050.1| putative integral membrane protein [Terrabacter sp. DBF63]
          Length = 300

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSE--FRRVIE 57
           ++   K+R  +F     + L ++    R G   V  A++         +  E  F R+ E
Sbjct: 147 VRDQAKERREEFAFATISYLRLVAIR-RLGHEGVVSAMSGAAR-----ISDEWMFTRIRE 200

Query: 58  TQH----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           T        +   +++  +   + + E+   + +  + +  GG+++++L + +  +RDR 
Sbjct: 201 TLQRAQWSNVPPWDALDELADDLQVPELHEIADITRL-TSSGGSITDSLMSRAASMRDRL 259

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
             K +V+A       SA +   +   +++L++  
Sbjct: 260 LSKEQVRASDATTSLSAPLAVLIMLFMASLLFPM 293


>gi|227113971|ref|ZP_03827627.1| type IV pilin biogenesis protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 401

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +    ++  +   ++AGLP+ +A+ ++  Q   P  R   R V      G SLSE++  
Sbjct: 58  REQLGESIKQLAALLQAGLPLLEALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALQE 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
                P+   S  +          G L+  L      L  ++  ++++Q   ++A +   
Sbjct: 118 YPHIFPVLYRSLIAV---------GELTGKLDACCLQLAQQQEKQSRLQQKVIKALRYPC 168

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGH 162
           +++         ++    P +  +    + P   
Sbjct: 169 FVLAIAMLVSMMMLTLVLPEFATLYSSFDTPLPW 202


>gi|317121506|ref|YP_004101509.1| type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
 gi|315591486|gb|ADU50782.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
           12885]
          Length = 408

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP+S  +  +V Q    +R     ++     G  L E+++        
Sbjct: 72  FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHAR----- 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +     +   ++L G L E LA L+     R  ++ K+++        A+++     
Sbjct: 127 GAFNDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKIRSALA---YPAFVLLVAAA 183

Query: 139 CVSTLVYFTSPGYMNVL 155
            V+ +V F  P ++ + 
Sbjct: 184 VVAVMVTFIVPTFVGIF 200


>gi|114045980|ref|YP_736530.1| type II secretion system protein [Shewanella sp. MR-7]
 gi|113887422|gb|ABI41473.1| type II secretion system protein [Shewanella sp. MR-7]
          Length = 406

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis OX99.30304]
 gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis G2136]
 gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M01-240355]
 gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein
           [Neisseria meningitidis M04-240196]
          Length = 402

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 71  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKY-----F 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 126 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 185

Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177
             V          +                     G M+L +A  F + G +
Sbjct: 186 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 236


>gi|118580924|ref|YP_902174.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503634|gb|ABL00117.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       +GLP+   + ++  Q  +   +    +V E+   G + +++++
Sbjct: 70  FTRQFATMID-------SGLPLVQCLEILSSQQENKTFKEILYKVKESVESGSTFADALA 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +         F   +    ++GG L   L  L+  +     +K +++          
Sbjct: 123 KHPKAFD----QLFVN-LVAAGEVGGILDTILQRLAAYIEKAMKLKKQIKG---AMVYPL 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG------HMLLG---------VAAAFMLIG 175
            I+      V  ++ F  P     +  D  G       +++          +    ++ G
Sbjct: 175 TIMSIAVIVVGVILIFVIPT-FAKMFQDFGGDLPAPTKIVIALSNFLTRYIIVIIALIYG 233

Query: 176 IMVMRL 181
           +  +  
Sbjct: 234 LFWVFK 239


>gi|261415454|ref|YP_003249137.1| Type II secretion system F domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371910|gb|ACX74655.1| Type II secretion system F domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326068|gb|ADL25269.1| pilus assembly protein PilC [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 400

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 75/178 (42%), Gaps = 20/178 (11%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +      AGLP+   + ++  Q  +P +++   ++ ++ + G SL++++++  +      
Sbjct: 68  MFSSMCSAGLPMLQCLNILEAQCENPELKNVVHKLTQSINGGSSLADALAQHPKVFDSLY 127

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +  +       + GG L   LA L+  L + + +K KV+           +   +   +
Sbjct: 128 CNMVA-----AGEAGGILEGILARLAETLENNQRLKRKVKKALTYPIMVIIVGIVVVIAL 182

Query: 141 STLVYFTSPGYMNVL---INDPRGHMLLGVA------AAFMLIGIMVM----RLMINF 185
            T V  T       L   +  P   +++ ++       AFM IG++++    ++++  
Sbjct: 183 MTFVVPTFAEQFAALDAELPAPT-QVVMNISDFIRNNGAFMFIGVIIIIFAYKMIMRI 239


>gi|291279501|ref|YP_003496336.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
           SSM1]
 gi|290754203|dbj|BAI80580.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
           SSM1]
          Length = 402

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + AGLP+  A+ +I  Q+     R  F  + E    G S S ++ +      
Sbjct: 65  ATRQLATMINAGLPIVRALDIISAQTPKKKFRKIFLEIKEDIEQGQSFSRALEKHKNIFG 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              ++  +       + GG L + L  LS+ +    ++K KV++  M       +   + 
Sbjct: 125 DLYINMVA-----AGEAGGLLDDILDRLSQYMEKAISLKRKVKSAMMYPSIVLIVAVLVV 179

Query: 138 FCVSTLVYFTSPGYMNVL 155
           + +   +           
Sbjct: 180 WGLMVFIIPKFKEMYEGF 197


>gi|253701603|ref|YP_003022792.1| type II secretion system protein [Geobacter sp. M21]
 gi|251776453|gb|ACT19034.1| type II secretion system protein [Geobacter sp. M21]
          Length = 401

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++  ++AGLP+  A+  I+      +      + E    GL+LS +  +  R  P     
Sbjct: 72  LLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGLALSAAFEKFPRVFP----H 127

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +   +    +  G+L + +      L+  +  + K+    +       +I      +S 
Sbjct: 128 LYIASVR-AGERTGDLPQTIRRYIAFLKRTEGFRGKIIGALI---YPVILIAVAAVAISL 183

Query: 143 LVYFTSPGY 151
           L+ +  P +
Sbjct: 184 LLIYVVPTF 192


>gi|46200147|ref|YP_005814.1| general secretion pathway protein F [Thermus thermophilus HB27]
 gi|46197775|gb|AAS82187.1| general secretion pathway protein F [Thermus thermophilus HB27]
          Length = 396

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 16  FPNALDII---VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISR 71
            P  +  +      V AG+PV+ A+  +  +S +P+  E  R V E    G +L++++  
Sbjct: 55  LPELVLFMEEFATLVGAGVPVAQALHTLSLESRNPLLKEAARGVRERVEGGEALAQAMEH 114

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                P          +   +++GG L   L   +  L    +++ KV+ 
Sbjct: 115 YPEVFPP-----LVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRT 159


>gi|148264721|ref|YP_001231427.1| type II secretion system protein [Geobacter uraniireducens Rf4]
 gi|146398221|gb|ABQ26854.1| type II secretion system protein [Geobacter uraniireducens Rf4]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       +GLP+   + ++ GQ  +   +    +V E+   G + ++++S
Sbjct: 70  FTRQFATMID-------SGLPLVQCLDILAGQQENKTFKDILVKVKESVESGSTFADALS 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +      V+  +       + GG L   L  L+  +     +K +V+         A
Sbjct: 123 KHPKAFDQLYVNLVA-----AGEAGGILDTILNRLAAYIEKAMKLKKQVKG---AMVYPA 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            I+      V  ++ F  P     +  D  G
Sbjct: 175 TIMSIAVIVVGVILVFVIPT-FAKMFADFGG 204


>gi|56459482|ref|YP_154763.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
 gi|56178492|gb|AAV81214.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
          Length = 412

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  A+  +   + +  +R   + V E    G +LS ++S      P
Sbjct: 76  FCRQMYSLTQAGIPMLRAIEGLADTTQNKRLRKTLQDVHEQLERGRNLSSAMSHHRGVFP 135

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     I    +  G L E+   LS  L   ++ + +++      +  ++++ +L 
Sbjct: 136 R-----LVIAIVHVGENTGQLEESFQQLSVYLEKEQDTRKRIK---AATRYPSFVLIALV 187

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +  L  F  P + ++ 
Sbjct: 188 IAMFVLNIFVIPTFASMF 205


>gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118]
 gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118]
          Length = 405

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 11/185 (5%)

Query: 1   MKHLIKKRTAKFLD-----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRR 54
           M   IKKR  +        D       +   ++AG+P+  A  ++   + +P V      
Sbjct: 48  MSTKIKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLND 107

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G SLS +  +   Y            +    +  G L + L  L+  +   + 
Sbjct: 108 IRTDVETGTSLSVAFRKFPLY-----FDNLYCNLIEAGESAGILDQLLDRLAVYMEKTEA 162

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +K+K+++  M   +   +   +   +   V        +    D     L+ +A + + +
Sbjct: 163 IKSKIKSALMYPISVLIVAFVVTAVIMIFVVPAFKEVFSNFGADLPAPTLVVIAISEIFV 222

Query: 175 GIMVM 179
               +
Sbjct: 223 KYWWL 227


>gi|120600397|ref|YP_964971.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|146291671|ref|YP_001182095.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|120560490|gb|ABM26417.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|145563361|gb|ABP74296.1| type II secretion system protein [Shewanella putrefaciens CN-32]
          Length = 406

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPEVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAITIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|119719687|ref|YP_920182.1| type II secretion system protein [Thermofilum pendens Hrk 5]
 gi|119524807|gb|ABL78179.1| type II secretion system protein [Thermofilum pendens Hrk 5]
          Length = 284

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAV-IVGQSSDPVRSEFRRVIETQH-LGLSL 65
           R      D P     +     +G+ +   +   ++ +S+  ++ E   ++      GL  
Sbjct: 99  RRITIEKDLPFTASYMAALSSSGMGLERLLERAVLYESNKEIKREIALILRDIKAYGLDT 158

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALS 123
             ++SR     P + ++     +       GN    L++ S +L     ++++     +S
Sbjct: 159 LTALSRAALRSPSRSLAMLWLGLRETYITSGNFKSYLSHFSGVLLSEKTQSLRRVTNTIS 218

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTS 148
           M A+    ++ + P    T++    
Sbjct: 219 MMAEVYTTLMVAAPLMFVTMLVIMD 243


>gi|315227312|ref|ZP_07869099.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|315119762|gb|EFT82895.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 209

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--- 68
           F       L++++ S+  G  +  ++  +     +PV   F+ V E  + G S +++   
Sbjct: 61  FPAQL--VLEMLIVSISNGASIPRSLEAVGTVMKNPVGKAFKEVAEALYRGSSWADAWEL 118

Query: 69  -ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               +      +        +    + G +    L  L   + +    + + +     +K
Sbjct: 119 GRRGIGDERGREVFDVVDRALEPSWRHGLS---PLNRLETTIEEANRQQNR-RLDDAVSK 174

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            S  I+  L  C        
Sbjct: 175 LSVKILLPLGLCFLPAFIVV 194


>gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
 gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
          Length = 368

 Score = 45.1 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 8   RTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R  K  +    +  D ++  +RAG+P+   +       +   +    ++      G SL 
Sbjct: 8   RMPKISIASLVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLALKIEEGSSLE 67

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           E+I      +P   +S   + I +     G L EAL+  +   R R  ++ ++    +  
Sbjct: 68  EAIQLGADKLPPSYISLLKSAIRM-----GKLPEALSAYTSFARSRMELRQEIGMALL-- 120

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                ++    F      +   P  + +
Sbjct: 121 -YPGIVLVMAFFLSLFACFIIFPKLLVI 147


>gi|227822842|ref|YP_002826814.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
           NGR234]
 gi|227341843|gb|ACP26061.1| general secretion pathway protein F, GspF [Sinorhizobium fredii
           NGR234]
          Length = 404

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG  +  A+  +V        R E   ++     G S S + + M    P        
Sbjct: 78  LEAGFTIDAALKTVVDDREMAAGREELSNLVAAVMAGGSFSSAFAHMQNAPPE------V 131

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           T + +  +  G L + +A+L++   D+K  +A+     +     A+++  + F +  +++
Sbjct: 132 TALLLSGEQAGRLEQVVASLAQSFEDQKARRAEAIETLL---YPAFLLAVMLFSIGVIMF 188

Query: 146 FTSPGYMNVLINDPRGHMLLGVAA 169
              P    V         +L    
Sbjct: 189 VLVPAIEPVFEGAEHARPMLISVL 212


>gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 576

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 46/105 (43%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           P  L+ +  +VR+G+ +  A+ V    +  P+    +++      G  ++E  + + +  
Sbjct: 378 PIFLNDLTMAVRSGMDIIRAMQVCARTNYGPLTKIVKKMAVQMSWGRPINEVFADLEKTE 437

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                   ++++   +  GG++ + L +++        MK ++ +
Sbjct: 438 KSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKKEISS 482


>gi|120612796|ref|YP_972474.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
 gi|120591260|gb|ABM34700.1| type II secretion system protein [Acidovorax citrulli AAC00-1]
          Length = 427

 Score = 44.7 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 71/178 (39%), Gaps = 25/178 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++  S  P + +  + V++    G  LS ++++          
Sbjct: 97  LSIMLRAGLALDNALRVLIDMSHKPSMATLLQGVLDAVKGGTPLSRALAQHRDLFG---- 152

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+  +I    +  G +S  L  L   +  ++ ++  V + ++     A ++G     + 
Sbjct: 153 DFYINMIR-SGEASGQMSAVLERLVAHMERQRALRDSVISATI---YPAILLGVAVLSLI 208

Query: 142 TLVYFTSPGY----------------MNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            ++ F  P +                M + +        L +  A + +G++V R + 
Sbjct: 209 AMLGFVVPQFEKLFTDMGDALPLPTQMVMALGHAFTRYGLLIGIAALGLGLLVRRWVT 266


>gi|319424901|gb|ADV52975.1| MSHA biogenesis protein, MshG [Shewanella putrefaciens 200]
          Length = 406

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPEVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +    ++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPILVLIAITIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|302387180|ref|YP_003823002.1| hypothetical protein Closa_2838 [Clostridium saccharolyticum WM1]
 gi|302197808|gb|ADL05379.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 309

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 3/150 (2%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           +  AV   +   + PV S F+  +    +    +   +  M   +       +   +   
Sbjct: 152 ILTAVDENIDYLNPPVLSVFKGFLYRIKMIDPDIVTGLEEMRIQIENAVFQEWCDAMITC 211

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            Q   NL   L  +   L D + +  +++ +  E +     +  L      L+YF +  +
Sbjct: 212 -QFDRNLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFITMQLLVVGNIPLLYFLNKDW 270

Query: 152 MNVLINDPRGHMLLGVAAAFMLI-GIMVMR 180
            + L+  P+G ++L +  A + I G  V++
Sbjct: 271 YHALMYTPQGQIILTICFAAIFISGAFVIK 300


>gi|91228621|ref|ZP_01262538.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01]
 gi|91187804|gb|EAS74119.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 12G01]
          Length = 407

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58
           + H +K R    F          I   +  G+P+  A+ ++        ++S    V   
Sbjct: 60  LSHRVKARDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  +S+++         +      T +    +  GNL+E    L+      + ++AK
Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           V          A I  ++   V+  V F 
Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188


>gi|311031469|ref|ZP_07709559.1| type II secretion system protein [Bacillus sp. m3-13]
          Length = 402

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      +RAG+ V +A  V+  Q+S   ++     V E    G  LSE+ ++
Sbjct: 61  LRDFVIFLRQFSTLIRAGISVVEATNVLAQQTSSKALKRVLFDVEEEMKQGNPLSEAAAK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +         F  +I    +  G L + L  L+     +   + K+ +          
Sbjct: 121 HPKVFSS----MFINMIK-AGEASGALDDTLDRLATQFEKQNETRQKIVSALTYPLVLGV 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMN------------VLINDPR---GHMLLGVAAAFMLIGI 176
           I   +   +   V  T     +            VL           L  +     +IG+
Sbjct: 176 IAIGVVIFLLVGVVPTFVAMFSDFGADLPLITRFVLWASEWMQSFWWLFLLIVLAAVIGL 235

Query: 177 MVMRL 181
           + M  
Sbjct: 236 VAMNK 240


>gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 416

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   + AG  +  A+  +     D   ++   V     LG S   + +         
Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVAQLGVVARLLLLGASWQRAWANAPARY--- 337

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +F    ++   Q G ++   L       RD    + +  A     + S+ I+  +  C
Sbjct: 338 --AFLGEALADGWQRGSSVIPTLIAT----RDAWIAQEQADAHQRAQRLSSMIVVPVGVC 391

Query: 140 VSTLVYFT 147
                   
Sbjct: 392 YLPAFVLV 399


>gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806]
 gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 404

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + AG+P+   + V+  QSS+P +R   + +      G  LS+++++       +   
Sbjct: 74  SVMINAGVPIMRCLGVLGDQSSNPKMRKALQAISTDVQQGSPLSQAMAK-----HTECFD 128

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    + GG L E L  LS++L D   +K ++++      A   +   + F ++ 
Sbjct: 129 ELYVSMIEAGETGGVLDEVLLRLSKLLEDMARLKNQIKSAMTYPVAVGILAIIVFFGMTI 188

Query: 143 LVYFTSPGYMNVL 155
            +          L
Sbjct: 189 FLIPVFAKIFTDL 201


>gi|329900877|ref|ZP_08272626.1| General secretion pathway protein F / Type II secretory pathway,
           component PulF [Oxalobacteraceae bacterium IMCC9480]
 gi|327549350|gb|EGF33921.1| General secretion pathway protein F / Type II secretory pathway,
           component PulF [Oxalobacteraceae bacterium IMCC9480]
          Length = 406

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + A LP+  A + ++ Q+    +R     +      G SLS+++S   R     + 
Sbjct: 76  LASLLEASLPLEQAFSALLEQAERTYLRDLIASIRSEVMGGSSLSDALSHHPR-----DF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L++ L+ L+  +  R  +  KV+           +  ++   + 
Sbjct: 131 ADIYRALVASGEQIGQLAKVLSRLADYIERRNALVQKVKLAFTYPAIVTVVAFAIVIFLL 190

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           T V    P  ++V  N  +   LL V   
Sbjct: 191 TYVV---PQIVSVFANTKQKLPLLTVLML 216


>gi|172058131|ref|YP_001814591.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
 gi|171990652|gb|ACB61574.1| type II secretion system protein [Exiguobacterium sibiricum 255-15]
          Length = 395

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           ++            VR+G+ +  A  ++  Q+   P+      V +    G+  S++I +
Sbjct: 53  IEHLVMYARQFATLVRSGVSIVKATEILRKQTDSKPLERALVEVEDDLRSGIQFSQAIEK 112

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R         F   +++  +  GNL EAL N+   L+ +  +K KV +  +     + 
Sbjct: 113 HPRV-----FDTFFVSMAMAGEASGNLEEALDNIVTQLQKQYEIKRKVISALIYPAVVSI 167

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           +   +   +   V  T     + L ++      + VA +   +    + L+I F
Sbjct: 168 VAIGVVVFLMLNVVPTFASIFDQLGSELPLITKIVVAVSDFFVAYWWVLLLIAF 221


>gi|24375595|ref|NP_719638.1| MSHA biogenesis protein MshG [Shewanella oneidensis MR-1]
 gi|24350490|gb|AAN57082.1|AE015842_2 MSHA biogenesis protein MshG [Shewanella oneidensis MR-1]
          Length = 406

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIGLAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|313679424|ref|YP_004057163.1| type II secretion system f domain [Oceanithermus profundus DSM
           14977]
 gi|313152139|gb|ADR35990.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
          Length = 399

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            ++     + AG+ +  A+  +  QS  P +R   ++V      G  L+E++       P
Sbjct: 62  FMEQFATLIGAGVSLVQALHTLSLQSPHPTLRHAAQQVRSRVEGGAGLAEAMGEFPEAFP 121

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              V   +       +L G+L E L  ++R L D   ++ K+++
Sbjct: 122 PIVVRMVAAA-----ELSGSLEETLRRVARYLDDAFELQQKIRS 160


>gi|187930139|ref|YP_001900626.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|309783039|ref|ZP_07677758.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA]
 gi|187727029|gb|ACD28194.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|308918147|gb|EFP63825.1| type IV pilus biogenesis protein PilC [Ralstonia sp. 5_7_47FAA]
          Length = 424

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  ++ +I    ++P        +    
Sbjct: 72  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 131

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 132 ESGSSMAQAFRRHPKY-----FDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 186

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   +   +   +   +   V  +  G  +    D     L  +A +   +   +
Sbjct: 187 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 245


>gi|331018826|gb|EGH98882.1| type II secretion system protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 405

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G      A   M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217


>gi|258544197|ref|ZP_05704431.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC
           15826]
 gi|258520573|gb|EEV89432.1| 3-isopropylmalate dehydrogenase [Cardiobacterium hominis ATCC
           15826]
          Length = 405

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV--RSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   +RAG+PV  A+ ++      P+  R     + E    G +L+E++      +   +
Sbjct: 74  MATMLRAGMPVLRALDLVGESIEKPLAMREMVFDLYERIQNGATLAEAMR--AHPLQFDD 131

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +    T +    +  G L   + N++  L   +  K KV+         A ++       
Sbjct: 132 LY---TSLIAAGEDAGMLESTMDNIALNLEKGEATKKKVKKALT---YPAIVMVFAIIVT 185

Query: 141 STLVYFTSPGYMNVLIND 158
           + L+    P +    +++
Sbjct: 186 AILLINVVPVFAQFFLSN 203


>gi|254491934|ref|ZP_05105113.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxidans DMS010]
 gi|224463412|gb|EEF79682.1| Bacterial type II secretion system protein F domain [Methylophaga
           thiooxydans DMS010]
          Length = 402

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+++ + +   Q S P +    +++      G SLS ++ +     P    
Sbjct: 76  MAFMLRAGLPLAECLQLAATQVSSPRLHLALKKMHRDIEAGQSLSSALGKHPDVFP---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              +  + V  +  G L   +  L+  L  +  ++ ++
Sbjct: 132 -DITINLVVAGESTGELDLIMERLAVHLEKKSQLRKQM 168


>gi|71734826|ref|YP_273101.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555379|gb|AAZ34590.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 405

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRIASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G      A   M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPAFTLMVIGL 217


>gi|50122722|ref|YP_051889.1| type IV pilin biogenesis protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613248|emb|CAG76699.1| protein transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 401

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   ++AGLP+ DA+ ++  Q   P  R   R V      G SLSE++  
Sbjct: 58  REQLGELIKQLAALLQAGLPLLDALKLVSEQHDRPGWRCVLRDVRTHVAQGSSLSEALLY 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
                P+     F  V        G L+  L      L  ++  ++++Q   ++A +   
Sbjct: 118 YPHIFPVL-YRSFIAV--------GELTGKLDTCCLQLAQQQEKQSRLQQKVIKALRYPC 168

Query: 131 WIIGSLPFCVSTLVYFTSPGY 151
           +++         ++    P +
Sbjct: 169 FVLTIAIVVSMMMLILVLPEF 189


>gi|159039935|ref|YP_001539188.1| hypothetical protein Sare_4420 [Salinispora arenicola CNS-205]
 gi|157918770|gb|ABW00198.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 330

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 38/178 (21%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
             + LD   +    +   +RAGLPV  A       +  P   E          G +L  +
Sbjct: 186 RRRHLDQLCD----LAADLRAGLPVGQA-------APLPAGGE---------PGSTLLRA 225

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
                              + +  + G  L+E L  +    R      A   A +  A+A
Sbjct: 226 ------------------AVRLADRTGAPLAELLDRIDADARAADRGLAAAAAQAAGARA 267

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           +AW++ +LP     L +      + VL++   G   L +A    + G+     +    
Sbjct: 268 TAWLLAALPLGGIGLGFGIGVDPVAVLLHSTAGVACLLLAVVLQVAGLFWAERLTAIR 325


>gi|260893568|ref|YP_003239665.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
 gi|260865709|gb|ACX52815.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
          Length = 409

 Score = 44.7 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + AG+P+  ++ V+  Q+ +  ++     V      G SL+E+       +P   +S
Sbjct: 74  ATLLEAGVPLLTSLRVLERQTKNRQLKKCLAEVAAEVQKGRSLAEAFGHHREILPEIFLS 133

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +       +  G L +AL  L+     + ++  K++  +      A +       +  
Sbjct: 134 MVAVG-----ETSGTLDKALGRLAAYFERQADLTDKLKTATSYPLLVAGVALVTAIALLV 188

Query: 143 LVYFTSPGYMNVL 155
           L+          +
Sbjct: 189 LIVPIFADIFRQM 201


>gi|149198877|ref|ZP_01875919.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
           HTCC2155]
 gi|149138075|gb|EDM26486.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
           HTCC2155]
          Length = 414

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   + AGLP+  A+  +  Q+     +R    ++ ++   G   S++++   +      
Sbjct: 82  LATLLGAGLPMVRAIRTLAKQAKKDVILRQILTQIADSIEGGNGFSDALASQPK-----S 136

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            +     +    +  G +   L  L+  +   + +K KV+   M   +  +I   + + +
Sbjct: 137 FNKLYVNMIRAGEASGAMEAVLNRLAEFMEKSEKLKRKVKGALMYPCSVLFIAVCITWGL 196

Query: 141 STLVYFTSPGYMNVLI 156
            T +        + L+
Sbjct: 197 MTFIVPKFKEIFDDLL 212


>gi|113869209|ref|YP_727698.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16]
 gi|113527985|emb|CAJ94330.1| Type IV pilus assembly protein PilC [Ralstonia eutropha H16]
          Length = 423

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           +K     R  K    D       +   ++AG+P+  ++ +I     +P        +   
Sbjct: 70  LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S++ +  R  +Y            +    + GG L   L  LS  +     +K +
Sbjct: 130 IEAGSSMAAAFRRHPKY-----FDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +++  +   A   +  ++   +   V     G  +    +     LL +A 
Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAI 235


>gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
           43017]
 gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
           43017]
          Length = 212

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 4/140 (2%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D++   + AGLPV  AV+ +   ++ PV    R       LG S   +      +    E
Sbjct: 76  DLLGACLIAGLPVPTAVSTVADVATGPVAEVLRSTGNALALGASAESAWQHARNHPDTAE 135

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFC 139
           +   +      +  G  L+     L+  +R+    + + +A       +  + +  LP  
Sbjct: 136 L---ARAACRTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLCFLPAF 192

Query: 140 VSTLVYFTSPGYMNVLINDP 159
           +   V     G  + L   P
Sbjct: 193 LCLGVIPVVLGLADHLTVTP 212


>gi|87309424|ref|ZP_01091559.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
           3645]
 gi|87287732|gb|EAQ79631.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
           3645]
          Length = 397

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 21  DIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + +   V  G+ +S A+  +   + ++ +++    +  +   G   S ++ +  ++    
Sbjct: 66  NQLAVMVDTGINLSTAIESVSSQEKNEALKTLLVDIRRSVESGEDFSAALGKYPKH---- 121

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +     +   S+  G L E L  ++  +R+   ++ KV+A        A ++      
Sbjct: 122 -FNKTYISLVKASEQTGMLGEMLERIAAYMRNEVEIRNKVRAALA---YPAVMVVLATAV 177

Query: 140 VSTLVYFTSPGY 151
              L+ +  P +
Sbjct: 178 TIFLLTYVLPKF 189


>gi|86146570|ref|ZP_01064892.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222]
 gi|218708201|ref|YP_002415822.1| type II secretory pathway subunit EpsF [Vibrio splendidus LGP32]
 gi|85835627|gb|EAQ53763.1| Type II secretory pathway, component EpsF [Vibrio sp. MED222]
 gi|218321220|emb|CAV17170.1| Type II secretory pathway, component EpsF [Vibrio splendidus LGP32]
          Length = 406

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V++G+P+ + +  +  QS  P +R+    V      G SL++S+S           
Sbjct: 75  ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLSDYPHIFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132
             F  +++   +  G+L   L  L+    +R+ M++K         V  +      S  +
Sbjct: 131 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAVTIVSFLL 189

Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +P  V  ++      P     L+         G+    ++IG++V+
Sbjct: 190 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLLLIIGVIVL 238


>gi|207739025|ref|YP_002257418.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
 gi|206592396|emb|CAQ59302.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 407

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL 
Sbjct: 63  IKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 120

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++ ++    P          I    + G  + +AL   ++  + ++ ++ KV     
Sbjct: 121 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 172

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 173 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 224


>gi|194290795|ref|YP_002006702.1| type IV pilus assembly transmembrane protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224630|emb|CAQ70641.1| type IV pilus ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 423

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           +K     R  K    D       +   ++AG+P+  ++ +I     +P        +   
Sbjct: 70  LKKRKAARGRKITEKDIAYFTRQLSTMLKAGIPLLQSIDIIARGHVNPNFTQLLSDIRFD 129

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S++ +  R  +Y            +    + GG L   L  LS  +     +K +
Sbjct: 130 IEAGSSMAAAFRRHPKY-----FDTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKGQ 184

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +++  +   A   +  ++   +   V     G  +    +     LL +A 
Sbjct: 185 IKSAMIYPIAVLTVAFAVTVILMLFVIPAFKGVFSSFGANLPAPTLLVIAI 235


>gi|197117666|ref|YP_002138093.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
 gi|197087026|gb|ACH38297.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
          Length = 401

 Score = 44.7 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 8/129 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++  ++AGLP+  A+  I+      +      + E    G++LS +  +  R  P     
Sbjct: 72  LLVLLKAGLPILQALDTILESGGGKLNEILSAIREDVKGGMALSAAFEKFPRVFP----H 127

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +   +    +  G+L + +      L+  +  + KV    +     A ++      VS 
Sbjct: 128 LYIASVR-AGERTGDLPQTIRRYIAFLKRTEGFRGKVIGALI---YPAILVTVAAVAVSL 183

Query: 143 LVYFTSPGY 151
           L+ +  P +
Sbjct: 184 LLIYVVPTF 192



 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMV 73
                   +   + +G+P+ +A+ + VG  ++ V        +     G  LS ++  M 
Sbjct: 266 ALAGFTRTLATVLGSGIPIVEAMRMSVGTLNNKVLERGLLLAVHRVEEGSKLSTALEGM- 324

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           + MP   +   +       +  G+L E L+++S    +   ++  +  L+        I+
Sbjct: 325 KLMPPLALRMLTVG-----ETTGSLEEMLSDISDYFEE--EIERDLHVLTTS--IEPAIM 375

Query: 134 GSLPFCVSTLVYFT 147
            ++   +  ++   
Sbjct: 376 VAMGVVIGVIIVTM 389


>gi|308235609|ref|ZP_07666346.1| hypothetical protein GvagA14_05194 [Gardnerella vaginalis ATCC
           14018]
          Length = 212

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 79  QEVSFFSTVIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +++   +  +     + S +G ++++ +  +S      K +      +    KA+  ++ 
Sbjct: 89  KDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVNDLSSEVFAMPKATIRLLT 148

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +LPF             + ++    RG+ LLG+   F +IG++ +  ++ 
Sbjct: 149 ALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGLLWVTWIMK 198


>gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 198

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++    + AGL V  A   +   +    +  +  V     +G+    +   M  +  L+
Sbjct: 64  VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKSHAGLE 123

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           ++   + ++ +  Q G  ++     +   LR      A+  A +      A +  +LP  
Sbjct: 124 DL---AQLVIMSGQSGATIAAGCQRICTSLR------AEASAHATAQAERAGVFIALPLA 174

Query: 140 VSTLVYFT 147
           V  L  F 
Sbjct: 175 VCFLPAFI 182


>gi|311113937|ref|YP_003985158.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC
           14019]
 gi|310945431|gb|ADP38135.1| hypothetical protein HMPREF0421_20049 [Gardnerella vaginalis ATCC
           14019]
          Length = 222

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 79  QEVSFFSTVIS----VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           +++   +  +     + S +G ++++ +  +S      K +      +    KA+  ++ 
Sbjct: 99  KDMRKVAQSLMSVYELSSSIGCSMTDCVQAVSDSYHANKRVNDLSSEVFAMPKATIRLLT 158

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +LPF             + ++    RG+ LLG+   F +IG++ +  ++ 
Sbjct: 159 ALPFLALLTGQLLGVNPILMIFTSSRGYALLGIGLLFYVIGLLWVTWIMK 208


>gi|320457130|dbj|BAJ67751.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 165

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L+     +    +  +LG  +   L  +    R  + M+          KA+  ++ +LP
Sbjct: 55  LEAARGVTAAAVLSDELGCQVVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 114

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L      G +  LI  PRG + L +       G+  MR ++ 
Sbjct: 115 AVTVALGELLGAGPLAFLIGSPRGVVCLTLGGCCYAAGLAWMRALLK 161


>gi|241763429|ref|ZP_04761483.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241367371|gb|EER61692.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 416

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 17  PNALDI---IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           P+ L I   +   +RAGL + +A+ V++  S  P V +  + +++    G  LS ++S  
Sbjct: 77  PDVLAITSELAIMLRAGLALDNALRVLIDMSHKPSVAALMQGILDAVKGGTPLSRALSHH 136

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                     F+  ++    +  G +S  L  L   +  ++ ++  V + ++     A +
Sbjct: 137 RELFG----DFYINMVR-SGEASGQMSAVLDRLVEHMERQRALRDSVISATI---YPAIL 188

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIND 158
           +      +  ++ F  P     L  D
Sbjct: 189 LAVAVLSLIAMLGFVVPQ-FEKLFTD 213


>gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328]
 gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328]
          Length = 377

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+ ++  ++V+  Q  +  ++     +      G  LS S+ +            F ++
Sbjct: 50  AGISMARCLSVLGEQCENAKLKRAINTLRADVEEGEELSSSMRKFPDVFD----QLFVSM 105

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +S   + GG L E L  L+ ++      ++++++ +   K   +I  ++ F ++T +  T
Sbjct: 106 VS-AGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFIAIAVFFGMATFLLPT 164

Query: 148 SPGYMN 153
             G   
Sbjct: 165 FSGIFE 170


>gi|241664289|ref|YP_002982649.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|240866316|gb|ACS63977.1| type II secretion system protein [Ralstonia pickettii 12D]
          Length = 420

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 7/179 (3%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  ++ +I    ++P        +    
Sbjct: 68  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSIDIIAKGHANPNFTQLLTEIRVDI 127

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 128 ESGSSMAQAFRRHPKY-----FDTLYCNLIDAGEQGGILDALLERLSLYMEKSLALKAQI 182

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  +   +   +   +   +   V  +  G  +    D     L  +A +   +   +
Sbjct: 183 KSALIYPISVLTVAFLVTVVLMIFVVPSFKGVFSGFGADLPAPTLFVIAISDFFVKWWI 241


>gi|117922092|ref|YP_871284.1| type II secretion system protein [Shewanella sp. ANA-3]
 gi|117614424|gb|ABK49878.1| type II secretion system protein [Shewanella sp. ANA-3]
          Length = 406

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|212717043|ref|ZP_03325171.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660031|gb|EEB20606.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
           16992]
          Length = 175

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+  +   ++    +  R   E  + G+S  ++       
Sbjct: 43  LPLILEMLSVAIRQGSSIPRALIAVGDIAAGEFGAGLRSAGEQLNEGVSWDDAWPD---- 98

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
               +++      +     G +  E L      L    +   + Q     AK S  ++  
Sbjct: 99  --DGDLAVVRDAFASSWHSGASPVERLETAVEQL----DWDERAQIEQAAAKLSVRLL-- 150

Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157
           LP  +  L  F + G +  +++
Sbjct: 151 LPTGLCFLPAFVAVGIIPSVMS 172


>gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205]
 gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205]
          Length = 288

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRY 75
           LD++   + A      ++              F R+ E+  L      S  + +  +   
Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCD---GWVFDRIRESLRLAQLQMHSPWDELRDLADR 212

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQALSMEAKASAW 131
           + + E+     ++      G  + E L + +  LRD+       +A+     ++   +  
Sbjct: 213 IGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLDIPGALL 272

Query: 132 IIGSLPFCVSTLV 144
           +   L F     V
Sbjct: 273 VFVLLGFGTYPFV 285


>gi|71734185|ref|YP_274397.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554738|gb|AAZ33949.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 403

 Score = 44.3 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+   V Q+    +      +      G+ L+E+++   R     ++
Sbjct: 73  LASLLSAGLPLDEALGATVEQAERQHIIQTLGAIRTDVRSGMRLAEALA--ARPRDFPDI 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L+  +  L+  + +R  ++ K+    +       +  ++   + 
Sbjct: 131 Y---RALIGAGEESGGLARVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIAIVIFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           + V        +    D  G  L  +AA
Sbjct: 188 SYVVPQIVSAFSQARQDLPGLTLAMLAA 215


>gi|113971812|ref|YP_735605.1| type II secretion system protein [Shewanella sp. MR-4]
 gi|113886496|gb|ABI40548.1| type II secretion system protein [Shewanella sp. MR-4]
          Length = 406

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSAMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|83745828|ref|ZP_00942885.1| GspF-related protein [Ralstonia solanacearum UW551]
 gi|83727518|gb|EAP74639.1| GspF-related protein [Ralstonia solanacearum UW551]
          Length = 445

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           IK R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL 
Sbjct: 101 IKNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 158

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++ ++    P          I    + G  + +AL   ++  + ++ ++ KV     
Sbjct: 159 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 210

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 211 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 262


>gi|148976511|ref|ZP_01813207.1| type II secretory pathway, component EpsF [Vibrionales bacterium
           SWAT-3]
 gi|145964087|gb|EDK29344.1| type II secretory pathway, component EpsF [Vibrionales bacterium
           SWAT-3]
          Length = 407

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V++G+P+ + +  +  QS  P +R+    V      G SL++S++           
Sbjct: 76  ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLADYPHIFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132
             F  +++   +  G+L   L  L+    +R+ M++K         V  +      S  +
Sbjct: 132 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPVVLVVFAVTIVSFLL 190

Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +P  V  ++      P     L+         G+    ++IG++V+
Sbjct: 191 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQDWGIQLLLLIIGVIVL 239


>gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC)
           [Natronomonas pharaonis DSM 2160]
 gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system
           proteins TadC) [Natronomonas pharaonis DSM 2160]
          Length = 615

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIV-GQSSDPVRSEFRRVIET 58
           ++  +  R        P A+  + R++  G     + +  +    +     +E RRV+  
Sbjct: 120 LRWRVDARRTAIERTLPGAVRYL-RALADGSEGRREMLRRVAKQDAYGETSAELRRVLRK 178

Query: 59  QHLGLSLSESISRMVRYMPLQEVSF-FSTVISVQSQLGGN-LSEALANLSRIL---RDRK 113
             L  SL   +  + R  P +E+   F       +  G + L   L   SR+L   R R+
Sbjct: 179 AELTGSLDSGLRSVARETPSRELLSPFLLKFREHANQGSDALQGYLRMESRMLSHQRSRE 238

Query: 114 NMKA-KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGV--A 168
             +A     L  E      ++ +L   + T++   +PG    +    +P    LL    A
Sbjct: 239 RQRAGDYLELLAELFIVLLVLPALLVIIVTVMSVLAPGLSRPVPIPGEPTMRALLVYGSA 298

Query: 169 AAFMLIG 175
           A  +++G
Sbjct: 299 AFVLVVG 305



 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 8   RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ--- 59
           R A+       +  + +  +   V  G P  +AV  +  +    P++++   +       
Sbjct: 386 RRARLDDAKDREIRDFVHAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLT 445

Query: 60  ---HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                G +  E++ R V  +          +++    +G +       L   +    + +
Sbjct: 446 TGTRDGGTRREALDRFVERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQR 505

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            K+++      A  W    L   +   V 
Sbjct: 506 KKLRSAMAVYVAVGWTTALLVVGIVVAVN 534


>gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC
           39073]
 gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC
           39073]
          Length = 402

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AGLP+  A+ V+  Q  +P +R     +++    G +   ++ R
Sbjct: 62  RRDLALFCRQLATMLGAGLPIMSALRVLQRQVENPSLRESIGVLLQDLESGEAFYRALGR 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASA 130
             R  P          +    +LGG L E L  L+  L     ++ KV++ L+  A  S 
Sbjct: 122 QPRVYP----PIVIHTVE-AGELGGALDETLERLAGHLEREHEVEEKVKSALTYPAVVSL 176

Query: 131 WIIGSLPFCVSTLV 144
             +G++ F ++ ++
Sbjct: 177 VAVGAVIFLLTYVL 190


>gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
          Length = 401

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 72/195 (36%), Gaps = 19/195 (9%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61
           L  KR  K      +    +   ++AG+ +  ++ +I  +       +  ++ ++ +   
Sbjct: 50  LKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIRQ 108

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ LSE++    R  P+         +   ++  GNL +    ++        +  KV+ 
Sbjct: 109 GIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---------AAFM 172
             +     + ++  +   + + +        + +++ P   ++L               +
Sbjct: 164 AMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMVSLPLPTVILLGLSGGIRKYWPFILL 223

Query: 173 LIGIMV--MRLMINF 185
           ++  ++  +RL++  
Sbjct: 224 ILAAVIFGIRLILRI 238


>gi|299537656|ref|ZP_07050947.1| hypothetical protein BFZC1_16629 [Lysinibacillus fusiformis ZC1]
 gi|298726908|gb|EFI67492.1| hypothetical protein BFZC1_16629 [Lysinibacillus fusiformis ZC1]
          Length = 235

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           FP  L   +  + +   V   + V +  + DP+  E  ++I+    G   + +      Y
Sbjct: 86  FPQFLQSFIALLPSSGNVYQTLKVALKYTPDPLDKELIKLIQKIENGNDRN-AYLEFADY 144

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           +   E      +I   S+ G        L    + L++ K  +     ++   K   + I
Sbjct: 145 IGSSEAYMVMNMIYQFSEQGVEKESIQELERYIQNLQENKVDELIQHKMNASDKFGLFPI 204

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIN 157
               F V          YM  + +
Sbjct: 205 LISLFLVGGFAGVIFLHYMTNVTD 228


>gi|294787153|ref|ZP_06752406.1| putative bacterial type II secretion system protein F domain
           protein [Parascardovia denticolens F0305]
 gi|294484509|gb|EFG32144.1| putative bacterial type II secretion system protein F domain
           protein [Parascardovia denticolens F0305]
          Length = 177

 Score = 44.3 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES--- 68
           F       L++++ S+  G  +  ++  +     +PV   F+ V E  + G S +++   
Sbjct: 29  FPAQL--VLEMLIVSISNGASIPRSLEAVGTVMKNPVGKAFKEVAEALYRGSSWADAWEL 86

Query: 69  -ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
               +      +        +    + G +    L  L   + +    + + +     +K
Sbjct: 87  GRRGIGDERGREVFDVVDRALEPSWRHGLS---PLNRLETTIEEANRQQNR-RLDDAVSK 142

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            S  I+  L  C        
Sbjct: 143 LSVKILLPLGLCFLPAFIVV 162


>gi|149174204|ref|ZP_01852832.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
           8797]
 gi|148847184|gb|EDL61519.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
           8797]
          Length = 420

 Score = 44.3 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%)

Query: 29  AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  ++ ++       P+++    VIE    G +LSE+   M +             
Sbjct: 96  AGLPILRSLRILEAQAKPGPLKASLDGVIEDIESGNTLSEA---MAKQPKC--FDNLYVN 150

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    + GG L   L  L+      +++K KVQ           +I      V  ++Y+ 
Sbjct: 151 MVKAGEAGGALEVILQRLAEFKERAQSLKKKVQG---AMIYPVAVITVAGLIVGFIMYWI 207

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLI 174
            P +  + ++   G  L G+    M I
Sbjct: 208 IPKFKKIFLD--FGTELPGITLLLMSI 232


>gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 263

 Score = 44.3 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 18/59 (30%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             P A D++   + AG     A   +      PV     R      LG     +  R+ 
Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGGPVGEALARGAAEVRLGGEPDAAWQRLA 178


>gi|167033520|ref|YP_001668751.1| type II secretion system protein [Pseudomonas putida GB-1]
 gi|166860008|gb|ABY98415.1| type II secretion system protein [Pseudomonas putida GB-1]
          Length = 396

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQ 59
           ++ +  +R A F          +   + AGLP+ DA+  +  ++  P  R     ++   
Sbjct: 47  LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKAPSPATRKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +ALA      R R ++  + 
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALARYISY-RQRLDLVRQK 158

Query: 120 QALSM 124
              + 
Sbjct: 159 LVGAS 163


>gi|330987706|gb|EGH85809.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G      A   M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPAFTLMVIGL 217


>gi|322688313|ref|YP_004208047.1| hypothetical protein BLIF_0122 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459649|dbj|BAJ70269.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 230

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L+     +    +  +LG      L  +    R  + M+          KA+  ++ +LP
Sbjct: 120 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 179

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        +  L+  PRG + L +       G+  MR ++ 
Sbjct: 180 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 226


>gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
 gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
          Length = 438

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A+ V+V  S  P + +    ++++   G   S+++    R       
Sbjct: 108 LAVMLRAGLPLDRALKVMVSMSQRPSITALLDDLLDSVKSGKGFSQALQPHQRLFG---- 163

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+  ++    + GG L E L+ L+  L   + ++  V          A ++      V 
Sbjct: 164 EFYINMVR-SGEAGGQLGEVLSRLAEHLERTRALRESV---VSALIYPAILVLVAAVSVF 219

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  P     L ND
Sbjct: 220 LMLAFVVPQ-FESLFND 235


>gi|325109102|ref|YP_004270170.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969370|gb|ADY60148.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 416

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 29  AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  ++ ++  QS   P+++    VIE    G +LSE+++R  +       + +  +
Sbjct: 92  AGLPILRSLRILESQSKPGPLKNSLIGVIEDVESGNTLSEAMTRQPKAFD----NLYCNM 147

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    + GG L   L  L+      +++K KVQ           ++      V  ++YF 
Sbjct: 148 VK-AGEAGGALEVILQRLAEFKEKSQSLKRKVQG---AMIYPVSVLTVAGGIVGFIMYFI 203

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            P +  + +    G  L  V  A + +  +V+
Sbjct: 204 IPKFKEIFMG--FGIELPAVTVALITVSDLVV 233


>gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing
           bacterium SS3/4]
          Length = 346

 Score = 43.9 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 57/178 (32%), Gaps = 13/178 (7%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL--- 61
           +KKR     +            V +GL + + + ++    +D    EF            
Sbjct: 1   MKKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQDDTD---REFCLACRKLGAFMT 57

Query: 62  -GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G ++ +++       P       +  +   +++ G L    A L+         + K++
Sbjct: 58  EGKTVGDAMEETG-RFPEP-----AIQMIRAAEMSGQLVRTTARLAVHYEKEHRTEGKIR 111

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +  +  K    ++  L   V   +  T    +  +       +L+G++         +
Sbjct: 112 SAVLYPKILVLMMIFLMLFVFLEILPTLEPLLVDVTLPLLTRILMGISHFLYAYRYFL 169


>gi|325521658|gb|EGD00426.1| general secretion pathway protein F [Burkholderia sp. TJI49]
          Length = 245

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  QS  D +R     +     
Sbjct: 5   RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEVL 57

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++S+  R     E+      +    +  G L   L+ L   +  R  +K K+ 
Sbjct: 58  GGHSLANALSQHPR--DFPEIY---RALVSAGEHTGKLGIVLSRLPGYIEQRNALKQKIL 112

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 113 LAFTYPAIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTI--VMMALSEFV 165


>gi|313903191|ref|ZP_07836584.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
 gi|313466502|gb|EFR62023.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
           13965]
          Length = 408

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   +RAGLP+S  +  +V Q    +R     ++     G  L E+++        
Sbjct: 72  FFRQLATMIRAGLPLSACMESLVEQGRGRLRQVAAGILRDVQSGRLLHEAMAHAR----- 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +   ++L G L E LA L+     R  ++ KV++        A+++     
Sbjct: 127 GAFDDVHVAMVRAAELSGRLDEVLARLAADEDRRLKVEGKVRSALA---YPAFVLLVAAA 183

Query: 139 CVSTLVYFTSPGYMNVL 155
            V+ +V F  P ++ + 
Sbjct: 184 VVAVMVTFIVPTFVGIF 200


>gi|212633385|ref|YP_002309910.1| type II secretion system protein [Shewanella piezotolerans WP3]
 gi|212554869|gb|ACJ27323.1| Type II secretion system protein [Shewanella piezotolerans WP3]
          Length = 406

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSQRMKDALNDISEQLTSGRPLSSAMNQHPDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F ++I V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|170699039|ref|ZP_02890096.1| general secretion pathway protein F [Burkholderia ambifaria
           IOP40-10]
 gi|172059126|ref|YP_001806778.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6]
 gi|170136075|gb|EDT04346.1| general secretion pathway protein F [Burkholderia ambifaria
           IOP40-10]
 gi|171991643|gb|ACB62562.1| general secretion pathway protein F [Burkholderia ambifaria MC40-6]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTV--VMMALSEFV 221


>gi|300690059|ref|YP_003751054.1| general Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum PSI07]
 gi|299077119|emb|CBJ49743.1| General Secretory Pathway protein F, type II secretion system
           [Ralstonia solanacearum PSI07]
          Length = 403

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+A +  Q+    V      +      G SLS ++S+  R     + 
Sbjct: 73  LASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSLSVALSQHPR-----DF 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL   L+ L+  +  R  + +K++           +  ++   V 
Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ +  P  ++V  N  +    L +   ++
Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIVMLWL 215


>gi|229590683|ref|YP_002872802.1| general secretion pathway protein F/S [Pseudomonas fluorescens
           SBW25]
 gi|229362549|emb|CAY49456.1| general secretion pathway protein F/S [Pseudomonas fluorescens
           SBW25]
          Length = 402

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 18/172 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++       
Sbjct: 68  ATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLAEALA-----TR 122

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            ++       +    +  G+L++ +  L+  + +R N+++K+    +       +  ++ 
Sbjct: 123 PRDFPAIYRALIAAGEESGDLAQVMERLADYIEERNNLRSKILTAFIYPGVVGLVSIAIV 182

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGV------------AAAFMLIGIM 177
             + + V        +    D  G  L  +                M  G  
Sbjct: 183 IFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGVWCFGLMAAGFW 234


>gi|331701309|ref|YP_004398268.1| type II secretion system F domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128652|gb|AEB73205.1| Type II secretion system F domain protein [Lactobacillus buchneri
           NRRL B-30929]
          Length = 353

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           N  D +   +  G  ++ A+  I   +   +      VI +   G   SES+  ++    
Sbjct: 33  NFFDSLANLLSIGFSLTQALKFIAD-TDKQLSRGVNVVIGSLKSGREFSESVRPLIETQA 91

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             +       + +  + G  LS+ L  L+   R R     K++A+ +       I+G+L 
Sbjct: 92  YHQ-------LLIAEKHG-QLSDILNELANFDRLRLKQLKKIKAMLVYPLFLCLILGTLI 143

Query: 138 FCVSTLVY 145
             +   V 
Sbjct: 144 LMIRVYVL 151


>gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
 gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
           43768]
 gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640]
 gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
 gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
           43768]
 gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009]
 gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06]
          Length = 410

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++     +P  +E    I      G +LS + S   +Y      
Sbjct: 79  LSTMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRSNVEQGSTLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAVYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVL----------------INDPRGHMLLGVAAAFMLIGIM 177
             V          +                     G M+L +A  F + G +
Sbjct: 194 IFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVL-IALGFAIYGFL 244


>gi|148272103|ref|YP_001221664.1| hypothetical protein CMM_0924 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830033|emb|CAN00961.1| conserved membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 341

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +  + V  + G  L+ +L  L+  L D   ++           A++  +  +P     L
Sbjct: 114 LAAGLEVADRTGAPLARSLDRLADSLVDIVRVRRDAGTALAGPVATSRTVLLMPGAGLLL 173

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                   + VL+    G + L V ++ + IG    R ++
Sbjct: 174 AAGLGFDPLRVLVTTVPGLVCLVVGSSLVAIGWRWNRRLV 213


>gi|50841534|ref|YP_054761.1| membrane associated protein [Propionibacterium acnes KPA171202]
 gi|295129572|ref|YP_003580235.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|50839136|gb|AAT81803.1| membrane associated protein [Propionibacterium acnes KPA171202]
 gi|291376741|gb|ADE00596.1| type II secretion system F domain protein [Propionibacterium acnes
           SK137]
 gi|313771159|gb|EFS37125.1| type II secretion system F domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313811815|gb|EFS49529.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313832351|gb|EFS70065.1| type II secretion system F domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832810|gb|EFS70524.1| type II secretion system F domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314975243|gb|EFT19338.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977658|gb|EFT21753.1| type II secretion system F domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985157|gb|EFT29249.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315081600|gb|EFT53576.1| type II secretion system F domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315097117|gb|EFT69093.1| type II secretion system F domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332546|gb|EGE74281.1| membrane associated protein [Propionibacterium acnes HL096PA2]
 gi|327446675|gb|EGE93329.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448882|gb|EGE95536.1| type II secretion system F domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328759745|gb|EGF73341.1| membrane associated protein [Propionibacterium acnes HL099PA1]
          Length = 300

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|296120696|ref|YP_003628474.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013036|gb|ADG66275.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 406

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+ +S A+  +  Q+  P ++     + E    G   S ++S   R    + V
Sbjct: 77  LAVVVDAGVALSVALEGLASQAVSPALKQMLTTIEERVKSGDDFSTALSEFPRSFDARYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +          +  G+L   L+ L+  L+     + +VQ   M    +A ++  +  C+ 
Sbjct: 137 NLVK-----AGEATGHLGPILSRLAEQLQQESETRQRVQGAMMYP--AAMLLMCVGACIF 189

Query: 142 TLVYF---TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            L Y     +P +    I  P    +L   +  +  G     ++
Sbjct: 190 LLTYVFPKIAPMFAGRGIELPAATRILLTVSNSLT-GYWWAWIL 232


>gi|268679669|ref|YP_003304100.1| type II secretion system F domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617700|gb|ACZ12065.1| Type II secretion system F domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 413

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +  +I+K+    +     A+  +     AG+ + D+V  +   + D  +++ F+ + +  
Sbjct: 61  LGTVIRKKIK--ITSLIAAIRQLSVMTNAGISIHDSVKEVANATVDKTLKTIFQSINDDL 118

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + GLSL++S+          +V   +  +    +  GN++E+L  L+ IL + +  + K 
Sbjct: 119 NSGLSLTQSLMSYRE-----DVGDVTIAMVELGESTGNMAESLEKLAEILEEIEENRQKF 173

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +      +    ++ ++    + L+ +  P + ++ 
Sbjct: 174 KKAL---RYPTTVVIAIAIAFTILMVYVVPKFKDIF 206


>gi|194291073|ref|YP_002006980.1| general secretory pathway protein f, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224908|emb|CAQ70919.1| General Secretory Pathway protein F, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           + L  +  A F              + AGLP+ +A+  +  Q+  P   E    I  + +
Sbjct: 61  RKLSTQEQALFTRQL-------ASLIVAGLPLDEALGALADQAERPYVHELLAGIRAEVM 113

Query: 62  GLS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           G S LS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSALSVALAQHPR-----DFPDIYRALVSAGEHSGHLGVVLERLAGYIESRNTLTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
                      +  ++   V  L+ +  P  ++V  N  +    L +   ++
Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 217


>gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R]
 gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 258

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQH 60
           H   +RT +      + L +   ++RAG+ + DA+   +  ++    +    +       
Sbjct: 75  HAAAQRTKQ-SLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQAR 133

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +        L ++     +     + G  L   +  +   +  ++      +
Sbjct: 134 SGGSGPRVLIDAS----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTR 189

Query: 121 ALSMEAKASAWIIGSLPFCVSTL 143
           A     +A+A I+  LP     +
Sbjct: 190 AALQGPQATAVILTVLPLAGLLM 212


>gi|330446777|ref|ZP_08310428.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490968|dbj|GAA04925.1| bacterial type II secretion system F domain protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 408

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 14/150 (9%)

Query: 12  FLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           F    P   L I  R +    +AG+P+  A   +   ++ P +++    V +    GL+L
Sbjct: 60  FQAQLPLEILVIFCRQLYSLTKAGVPLLRAFKGLSQSANHPLLKTTLEEVTQDLTNGLAL 119

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S S+ +  R         F ++I V  +  G L + L  L+         + +++     
Sbjct: 120 SASMQQHPRVFS----RLFISMIHV-GENTGRLDQVLLQLANYYEQEMKTRRQIK---SA 171

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +   +++ ++   +  L     P + ++ 
Sbjct: 172 MRYPTFVLTAIVIAMGILNTKVIPQFASMF 201


>gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074]
 gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074]
          Length = 307

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78
           LD++  S+  G  + +A+      S        R  +    + G S  +++  +   + +
Sbjct: 172 LDLVSMSLAGGRGLPEALMAAAEVSDGWAAKRIRNALNDARITGHSQWQALGELGEELGI 231

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +E+   +  +++ +  G  + E+LA+ +  +R R+  + +    +   K+ + ++  L  
Sbjct: 232 EELKDLAASLALVADDGAKVRESLASRAETMRHREMAEIE---GAAGEKSQSMLVAQLLL 288

Query: 139 CVSTLVYFTSPGYMNVL 155
           C   LV+   P  M V 
Sbjct: 289 CAGFLVFLIFPAAMRVF 305


>gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 198

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +++    + AGL V  A   +   +    +  +  V     +G+    +   M  +  L+
Sbjct: 64  VELFAACLAAGLSVHGATTAVARTADAQTKELWETVAALLGVGVPAQSAWGHMKGHAGLE 123

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           ++   + ++ +  Q G  ++     +   LR      A+  A +      A +  +LP  
Sbjct: 124 DL---AQLVIMSGQSGATIAAGCHRICTSLR------AEASAHATAQAERAGVFIALPLA 174

Query: 140 VSTLVYFT 147
           V  L  F 
Sbjct: 175 VCFLPAFI 182


>gi|134298900|ref|YP_001112396.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134051600|gb|ABO49571.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR  K  +        +   + AG+P++  +  +  Q+S+P + S    V      G+  
Sbjct: 56  KRKVKLGE-LAFFSRQLAAMLTAGIPLTRCLYTLSEQTSNPILASCAGEVASKVESGIGF 114

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           SE++S          +           ++ G+L+E L  LS  L   K ++  ++A +  
Sbjct: 115 SEALSSHKAIFSTMYIEMVK-----AGEMSGSLNEILTRLSLQLEKDKLLRDSLKAATF- 168

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
               + ++      +  +++F  P ++ +    P G  L
Sbjct: 169 --YPSIVLTFAGLVILAMMFFVVPIFIGMF---PPGMKL 202


>gi|254230334|ref|ZP_04923721.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25]
 gi|262393317|ref|YP_003285171.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25]
 gi|151937158|gb|EDN56029.1| type IV pilus assembly protein TapC [Vibrio sp. Ex25]
 gi|262336911|gb|ACY50706.1| type 4 fimbrial assembly protein PilC [Vibrio sp. Ex25]
          Length = 407

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58
           + H +K R    F          I   +  G+P+  A+ ++        ++S    V   
Sbjct: 60  LSHRVKGRDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  +S+++         +      T +    +  GNL+E    L+      + ++AK
Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           V          A I  ++   V+  V F 
Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188


>gi|301165488|emb|CBW25059.1| pilus-assembly protein [Bacteriovorax marinus SJ]
          Length = 406

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D  N    +   + AG+P+  A+ +I      P ++   + +      G +++E++ + 
Sbjct: 68  KDLANFTKQLSIMINAGVPILQALEIIFKSEKQPTLKKSVKNIARDVGEGQTIAEAMEK- 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 +  +     +    + GG L E L  LS  L  ++  KA+V+     A    +I
Sbjct: 127 -----QKGFNKLYCNLVKAGEAGGILDEILEKLSVHLEKQEKTKAQVK----SAMMYPFI 177

Query: 133 IGSLPFCVS-TLVYFTSPGYMNVLIND 158
           +  + F V   ++ F  P ++ +L + 
Sbjct: 178 VTLVGFGVIWGMMVFVVPQFVGMLADT 204


>gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
           2396]
 gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
           2396]
          Length = 409

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 28  RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           RAG+P+  A+  +   +    +      V      G++L+ ++    R         F +
Sbjct: 82  RAGIPIIRAIRGLAESTRSETLAEVLDDVARRLEGGVNLATAMRAHPRTFN----ELFVS 137

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           +I V  +  G L E+   L   +   ++ + +V       +    ++ ++   +  + +F
Sbjct: 138 MILV-GENTGQLEESFRQLGENIELERDTRKRV---GQAVRYPIMVVVAITIALLVVNFF 193

Query: 147 TSPGYMNVL 155
             P +  V 
Sbjct: 194 VIPAFAGVF 202


>gi|23465097|ref|NP_695700.1| hypothetical protein BL0507 [Bifidobacterium longum NCC2705]
 gi|23325711|gb|AAN24336.1| hypothetical protein BL0507 [Bifidobacterium longum NCC2705]
          Length = 230

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L+     +    +  +LG      L  +    R  + M+          KA+  ++ +LP
Sbjct: 120 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 179

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        +  L+  PRG + L +       G+  MR ++ 
Sbjct: 180 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 226


>gi|222056454|ref|YP_002538816.1| type II secretion system protein [Geobacter sp. FRC-32]
 gi|221565743|gb|ACM21715.1| type II secretion system protein [Geobacter sp. FRC-32]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       +GLP+   + ++ GQ  +   +    +V E+   G + ++++S
Sbjct: 70  FTRQFATMID-------SGLPLVQCLEILSGQQENKSFKEILIKVKESVESGSTFADALS 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +      V+  +       + GG L   L  L+  +     +K +V+          
Sbjct: 123 KHPKAFDQLYVNLVA-----AGEAGGILDTILNRLAAYIEKAMKLKKQVKG---AMVYPI 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            I+      V  ++ F  P     +  D  G
Sbjct: 175 TIMSIAVIVVGVILVFVIPT-FAKMFADFGG 204


>gi|313817686|gb|EFS55400.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314961706|gb|EFT05807.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315086656|gb|EFT58632.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 300

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDELSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|115350106|ref|YP_771945.1| general secretion pathway protein F [Burkholderia ambifaria AMMD]
 gi|115280094|gb|ABI85611.1| general secretion pathway protein F [Burkholderia ambifaria AMMD]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221


>gi|289626922|ref|ZP_06459876.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330867360|gb|EGH02069.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 405

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +RS    + +    G S + ++ R   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + ++      G  L   A   M+IG+
Sbjct: 187 ILLIKVVPQFQSIF--SSFGAEL--PAFTLMVIGL 217


>gi|224373171|ref|YP_002607543.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
 gi|223589457|gb|ACM93193.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
          Length = 414

 Score = 43.9 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPL 78
           +  +   ++AG+ + DA+  I   + D +  E F +  E    G SLS++ +    Y+  
Sbjct: 78  IRQLAVLIKAGISLKDALEDIANNTKDALIKEVFLKAAEAIDSGKSLSDTFAEYEEYLGG 137

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +     ++ +  Q G +L  AL +L++I  +    + K+       +     + ++  
Sbjct: 138 ISL----AMVRLGEQTG-DLVMALESLAQIYENMYENRRKMVKAL---RYPVITLIAIAA 189

Query: 139 CVSTLVYFTSPGY 151
             + L+    P +
Sbjct: 190 AFTFLILVVVPKF 202



 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   +++G+P+ DA+ +  G   +  ++++ + +I+  + G S +E ++       
Sbjct: 281 FLMTMASLLKSGIPLVDALKISEGIIENEVLKNKIKEIIKGINQGRSFAEMVAE------ 334

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              V+F +  +    +  G L   L + +    DR           +     A I   + 
Sbjct: 335 QNLVNFVALRMISAGEDSGELDSMLESAAGYYEDRFQ--------DIIDNMQASIEPIML 386

Query: 138 FCVSTLVYFTSPGYMNVLIN 157
             +  LV   + G    + +
Sbjct: 387 TVIGGLVLLIALGIFLPMWD 406


>gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102]
 gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102]
          Length = 413

 Score = 43.9 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 6/185 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R  +  +D       +   ++AGLP+  A  ++    S+P  +E   ++    
Sbjct: 62  VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    ++ +     P +    F   +    + GG L   L  L+      + +K KV+
Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                  A   +  +L F +   V          +  +  G   L +  + + +    + 
Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPGLTQLVMNLSDLFVDYGWIM 235

Query: 181 LMINF 185
           +++  
Sbjct: 236 IILLI 240


>gi|330954319|gb|EGH54579.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G      A   M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217


>gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 336

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 7/140 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           RT       PN    +     +G+ + +A+  +       +    +++       +    
Sbjct: 115 RTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIKKLDNEVSWNIPFIN 174

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +I R    +          +I+  SQ GG++SE L   +           +  +L+ E +
Sbjct: 175 AIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAAND-------SYEFVSLATERR 227

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            +  I   +      +    
Sbjct: 228 NNMLIYIVIVLVSFLVFLLV 247


>gi|78064719|ref|YP_367488.1| general secretion pathway protein F [Burkholderia sp. 383]
 gi|77965464|gb|ABB06844.1| General secretion pathway protein F [Burkholderia sp. 383]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L +    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPVLTI--VMMALSDFV 221


>gi|171318825|ref|ZP_02907962.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5]
 gi|171095966|gb|EDT40899.1| general secretion pathway protein F [Burkholderia ambifaria MEX-5]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221


>gi|15799790|ref|NP_285802.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 EDL933]
 gi|15829364|ref|NP_308137.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752499|ref|ZP_02777521.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755715|ref|ZP_02780722.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764861|ref|ZP_02789868.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770427|ref|ZP_02795434.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776814|ref|ZP_02801821.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781992|ref|ZP_02806999.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789634|ref|ZP_02814641.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC869]
 gi|168801439|ref|ZP_02826446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC508]
 gi|195938213|ref|ZP_03083595.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808762|ref|ZP_03251099.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812868|ref|ZP_03254197.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820726|ref|ZP_03261046.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397106|ref|YP_002268712.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325515|ref|ZP_03441599.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791241|ref|YP_003076078.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226861|ref|ZP_05941142.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255265|ref|ZP_05947798.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280931|ref|YP_003497749.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str.
           CB9615]
 gi|12512815|gb|AAG54410.1|AE005187_3 putative integral membrane protein involved in biogenesis of
           fimbriae, protein transport, DNA uptake [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359566|dbj|BAB33533.1| putative integral membrane protein HofC [Escherichia coli O157:H7
           str. Sakai]
 gi|187767814|gb|EDU31658.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013667|gb|EDU51789.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000460|gb|EDU69446.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357065|gb|EDU75484.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360687|gb|EDU79106.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365208|gb|EDU83624.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370836|gb|EDU89252.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC869]
 gi|189376381|gb|EDU94797.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC508]
 gi|208728563|gb|EDZ78164.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734145|gb|EDZ82832.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740849|gb|EDZ88531.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158506|gb|ACI35939.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746384|gb|ACI71499.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746386|gb|ACI71500.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746388|gb|ACI71501.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746390|gb|ACI71502.1| putative integral membrane protein HofC [Escherichia coli]
 gi|209746392|gb|ACI71503.1| putative integral membrane protein HofC [Escherichia coli]
 gi|217321736|gb|EEC30160.1| type IV pilus assembly protein PilC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590641|gb|ACT70002.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760804|gb|ADD54765.1| Type IV pilus assembly protein PilC [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190373|gb|EFW65023.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. EC1212]
 gi|320642143|gb|EFX11494.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320647506|gb|EFX16301.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str.
           493-89]
 gi|320652840|gb|EFX21078.1| type IV pilin biogenesis protein [Escherichia coli O157:H- str. H
           2687]
 gi|320658229|gb|EFX25958.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663538|gb|EFX30822.1| type IV pilin biogenesis protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668850|gb|EFX35645.1| type IV pilin biogenesis protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345176|gb|EGD68919.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. 1125]
 gi|326346970|gb|EGD70704.1| Type IV fimbrial assembly protein PilC [Escherichia coli O157:H7
           str. 1044]
          Length = 400

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  R ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                  G +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKL 233

Query: 178 VMRL 181
           +MR 
Sbjct: 234 LMRR 237


>gi|322418665|ref|YP_004197888.1| Type II secretion system F domain-containing protein [Geobacter sp.
           M18]
 gi|320125052|gb|ADW12612.1| Type II secretion system F domain protein [Geobacter sp. M18]
          Length = 401

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 8/136 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++  ++AGLP+  A+  I+   +  +      + E    G++LS +  +  R  P     
Sbjct: 72  LLVLLKAGLPIIQALDTILESGTGKLNEILSAIREDIKGGMALSAAFEKYPRVFP----Q 127

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            +   I    +  G+L + +      L+  +  + K+          A +I      +S 
Sbjct: 128 LYIASIR-AGERTGDLPQTIRRYIAFLKRTEGFRGKI---IAALFYPAILITVATLAISM 183

Query: 143 LVYFTSPGYMNVLIND 158
           L+ +  P +  +    
Sbjct: 184 LLIYVVPTFSQIYAGS 199


>gi|269966287|ref|ZP_06180375.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B]
 gi|269829084|gb|EEZ83330.1| type IV pilin biogenesis protein PilC [Vibrio alginolyticus 40B]
          Length = 407

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 22/149 (14%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58
           + H +K R    F          I   +  G+P+  A+ ++        ++S    V   
Sbjct: 60  LSHRVKGRDITVFTRQ-------ISTMLITGVPLVQALKLVSENHKKAEMKSILMSVTRA 112

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  +S+++         +      T +    +  GNL+E    L+      + ++AK
Sbjct: 113 VEAGTPMSKAM-----RTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAK 167

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           V          A I  ++   V+  V F 
Sbjct: 168 V--------IKALIYPAMVVLVALGVSFI 188


>gi|282899279|ref|ZP_06307250.1| type II secretion system protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195848|gb|EFA70774.1| type II secretion system protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 419

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
            A F   F          V +G+ +  ++ +I  Q  +P ++    ++      G++LS+
Sbjct: 81  KAIFSRQF-------ATLVNSGVTIIKSLDIISLQCPNPKLKKALNQISTDIKTGINLSD 133

Query: 68  SISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           S+ +        +        +    + GG L + L  L+++L D   ++ ++++     
Sbjct: 134 SMKK------HPDCFDALYISMVQAGEAGGVLDDVLHRLAKLLEDLAKLQNQIKSALSYP 187

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                   ++   ++  +          +
Sbjct: 188 IFVGCFAIAIALAMTIFIIPIFANVFKNM 216


>gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
 gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
          Length = 287

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 3/136 (2%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV---RSEFRRVIETQHLGLSLSES 68
            + +FP  LD+++  + +G+ +      I    +  V         ++     G+   ++
Sbjct: 135 IMAEFPFLLDLMLMMLESGISLDQCFRSIARDEAIAVPHHARLIAMLVADLDRGMRYEQA 194

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           + R    + +      + +       G  L+ AL    R    R+   A+     +  + 
Sbjct: 195 LDRWAARVAVNGAKELAALFRQALFQGVELAPALREFVREFTQRRVANAREAMGGITVRM 254

Query: 129 SAWIIGSLPFCVSTLV 144
              +I      +  ++
Sbjct: 255 VVLMILFFMPALFVVL 270


>gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 410

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GL +  A+A++  Q+   P+     +V     +G++ S ++ +     P    
Sbjct: 80  LATMIDSGLSLLRALAILSEQTESKPLAKVLAQVRSDVEVGVAFSTALGKHPTVFPP--- 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++GG L E L +++        ++ K+++          +       + 
Sbjct: 137 --LMINMVKAGEVGGFLDETLVSVANNFEAEVKLRGKIKSAMTYPVVVFVVAILATTGML 194

Query: 142 TLVYFTSPGYMNVL 155
             +     G  + L
Sbjct: 195 LFIVPIFAGMFSSL 208


>gi|189440158|ref|YP_001955239.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
 gi|227545622|ref|ZP_03975671.1| Flp pilus assembly protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312133503|ref|YP_004000842.1| tadb [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483639|ref|ZP_07942615.1| tadB protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428593|gb|ACD98741.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
 gi|227213738|gb|EEI81577.1| Flp pilus assembly protein [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|291517621|emb|CBK71237.1| hypothetical protein BIL_18120 [Bifidobacterium longum subsp.
           longum F8]
 gi|311772746|gb|ADQ02234.1| TadB [Bifidobacterium longum subsp. longum BBMN68]
 gi|316914917|gb|EFV36363.1| tadB protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 218

 Score = 43.5 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%)

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L+     +    +  +LG      L  +    R  + M+          KA+  ++ +LP
Sbjct: 108 LEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALP 167

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L        +  L+  PRG + L +       G+  MR ++ 
Sbjct: 168 AVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLK 214


>gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688021|gb|EFD55509.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
          Length = 165

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 95  GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           G  ++  +    R + +R+   A+V A    A+ASA I+  LP     L        ++ 
Sbjct: 72  GLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSF 131

Query: 155 LINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           L+    G  LL V       G++    + +
Sbjct: 132 LLTGRVGGWLLVVGLTLACAGLLWSDRITD 161


>gi|257484001|ref|ZP_05638042.1| type II secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRTLVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPIAVLIVAIIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G      A   M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGADLPAFTLMVIGL 217


>gi|298253207|ref|ZP_06976999.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1]
 gi|297532602|gb|EFH71488.1| Flp pilus assembly protein TadB [Gardnerella vaginalis 5-1]
          Length = 191

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           + + LG  ++E +   +     +K  +     ++   KA+  ++ +LP            
Sbjct: 84  LSNTLGCAMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + +LI    G +LL +      +G+  +  M+  
Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179


>gi|124027109|ref|YP_001012429.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
 gi|123977803|gb|ABM80084.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
          Length = 283

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 12/181 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHL 61
            + R  K    F      +   + AG  + +    +  +    ++    E   ++     
Sbjct: 94  ARNRGQKLEARFLLFAQALATRLLAGAGLIETFERMYREDLRELKEFSIELEYIVSGIRA 153

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALA-NLSRILRDRKNMKAKVQ 120
           G+ +   +    +  P   +      +S  ++ G  L E +   +S  L  ++    ++ 
Sbjct: 154 GIPVDRVLEEASKLTPSPSLHSLLAGLSAAARTGSGLREVVDAAISEYLSTQETEIDRLT 213

Query: 121 ---ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-----MNVLINDPRGHMLLGVAAAFM 172
                 +E   +A ++  +   V  L+              + +    G  +       M
Sbjct: 214 NSLGALLEFYMAAAVMLPVSIGVVGLLLVFQQVAGLSFDAILFLTTFIGIPVTVAVVVIM 273

Query: 173 L 173
            
Sbjct: 274 A 274


>gi|256832577|ref|YP_003161304.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
 gi|256686108|gb|ACV09001.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
          Length = 410

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 26/177 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL +  A+ ++  Q+ +  ++     V      G SLS ++++  +  P    
Sbjct: 80  LATMINAGLSLLRALTILTEQTENKVLQGILGTVRSDVETGGSLSSALAKHPKVFP---- 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                ++    + GG L + L ++++   D   +K K++           ++       +
Sbjct: 136 PLMINMVR-AGETGGFLDKTLLSIAKNFEDEVKLKGKIK---SAMTYPVVVLVIAILASA 191

Query: 142 TLVYFTSPGYMNVLINDPRG----------------HMLLGVAAAFMLIGIMVMRLM 182
            ++ F  P     +     G                 M +      +  G +    +
Sbjct: 192 GMLIFIVP-VFAGMFATLGGELPFVTQILVTMSDFLKMAIWPILLLVFAGFIWWNRI 247


>gi|297243109|ref|ZP_06927047.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD]
 gi|296889320|gb|EFH28054.1| hypothetical protein GVAMD_1121 [Gardnerella vaginalis AMD]
          Length = 191

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           + + LG  ++E +   +     +K  +     ++   KA+  ++ +LP            
Sbjct: 84  LSNTLGCAMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + +LI    G +LL +      +G+  +  M+  
Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179


>gi|326318814|ref|YP_004236486.1| Type II secretion system F domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375650|gb|ADX47919.1| Type II secretion system F domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 427

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++  S  P +    + V++    G  LS ++S+          
Sbjct: 97  LSIMLRAGLALDNALRVLIDMSHKPSMAVLLQGVLDAVKGGTPLSRALSQHRDLFG---- 152

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+  +I    +  G +S  L  L   +  ++ ++  V + ++     A ++G     + 
Sbjct: 153 DFYINMIR-SGEASGQMSAVLERLVAHMERQRALRDSVISATI---YPAILLGVAVLSLI 208

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
            ++ F  P     L  D  G  L       M +G    R
Sbjct: 209 AMLGFVVPQ-FEKLFTD-MGDALPLPTQLVMALGHAFTR 245


>gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
 gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
          Length = 407

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80
           +   V AG+ +   + V+  Q ++  ++     +      G++LS+++ +        + 
Sbjct: 76  LATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAMRK------HPDC 129

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    ++GG L E L  L+++L D   ++ ++++          +  ++   +
Sbjct: 130 FDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGILATAIFVGM 189

Query: 141 STLVYFTSPGYMNVL 155
           +  +          L
Sbjct: 190 TVFLIPIFAKIFVEL 204


>gi|296130610|ref|YP_003637860.1| hypothetical protein Cfla_2776 [Cellulomonas flavigena DSM 20109]
 gi|296022425|gb|ADG75661.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
          Length = 243

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 38/92 (41%)

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           + G  L++ L +L+  +        ++++     +A+A ++ +LP     +         
Sbjct: 147 ETGAPLADVLEHLADAVAADAEQAGELESALAGPRATARVLAALPVLGLLVGAGMGARPW 206

Query: 153 NVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +VL +   G  +       ++ G + ++ ++ 
Sbjct: 207 DVLTDGGFGSAVAVTGVGLLVAGQVWVQALLR 238


>gi|261211521|ref|ZP_05925809.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
 gi|260839476|gb|EEX66102.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
          Length = 408

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASPHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DALYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|300813874|ref|ZP_07094179.1| type II secretion system F domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512061|gb|EFK39256.1| type II secretion system F domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 389

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +++G+ + +A+ ++    ++  R+   ++ +  H G+SLS+++++  +       + F  
Sbjct: 72  LKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKK------FTDFIV 125

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWIIGSLPFCVST 142
            +    +   NL +    L+   +  + ++  + +           SA ++  L   V  
Sbjct: 126 SLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLMLNVIP 185

Query: 143 L---VYFTSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMVM 179
               +Y  +   + ++     G         + ++  F+ I    +
Sbjct: 186 TFADIYDQAGESLPLMTRLLIGFSKILRENFIIISFIFLAISFFFI 231


>gi|83746394|ref|ZP_00943446.1| GspF [Ralstonia solanacearum UW551]
 gi|207722786|ref|YP_002253221.1| general secretory pathway protein f [Ralstonia solanacearum MolK2]
 gi|207744655|ref|YP_002261047.1| general secretory pathway protein f [Ralstonia solanacearum
           IPO1609]
 gi|83726935|gb|EAP74061.1| GspF [Ralstonia solanacearum UW551]
 gi|206587970|emb|CAQ18551.1| general secretory pathway protein f [Ralstonia solanacearum MolK2]
 gi|206596062|emb|CAQ62989.1| general secretory pathway protein f [Ralstonia solanacearum
           IPO1609]
          Length = 403

 Score = 43.5 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+A +  Q+    V      +      G SLS ++++  R     + 
Sbjct: 73  LASLLVAGLPLDEALAALADQAERAYVHELLASIRAEVVGGSSLSVALAQHPR-----DF 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL   L+ L+  +  R  + +K++           +  ++   V 
Sbjct: 128 PDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAIVTVVAFAI---VI 184

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ +  P  ++V  N  +    L +   ++
Sbjct: 185 FLLSYVVPQVVSVFANTKQKLPTLTIIMLWL 215


>gi|157373688|ref|YP_001472288.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
 gi|157316062|gb|ABV35160.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
          Length = 406

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    +R     + E    G  LS +++           
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSQRMRDALNDISEQLTSGRPLSSAMNHHPDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F +++ V  +  G L +A   L+  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLAGYIEREQETRRRIK---AAMRYPIFVLIAIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|282883324|ref|ZP_06291918.1| putative type II secretion system protein F [Peptoniphilus
           lacrimalis 315-B]
 gi|281296828|gb|EFA89330.1| putative type II secretion system protein F [Peptoniphilus
           lacrimalis 315-B]
          Length = 389

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 65/166 (39%), Gaps = 19/166 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +++G+ + +A+ ++    ++  R+   ++ +  H G+SLS+++++  +       + F  
Sbjct: 72  LKSGIVLEEALKIVADNFNEKKRNILLKISQDLHSGISLSQAMAQSKK------FTDFIV 125

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA----SAWIIGSLPFCVST 142
            +    +   NL +    L+   +  + ++  + +           SA ++  L   V  
Sbjct: 126 SLVDVGENSSNLEQVFRKLASFYKREEKLRKNIYSTLTYPIILIIVSALVVNFLMLNVIP 185

Query: 143 L---VYFTSPGYMNVLINDPRGHM------LLGVAAAFMLIGIMVM 179
               +Y  +   + ++     G         + ++  F+ I    +
Sbjct: 186 TFADIYDQAGESLPLMTRLLIGFSKILRENFIIISFIFLAISFFFI 231


>gi|310765051|gb|ADP10001.1| type IV pilin biogenesis protein [Erwinia sp. Ejp617]
          Length = 399

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +   ++    + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLTHLHQRISAGEPFSQALREWPDIFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ      +   +I+    
Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKAL---RYPLFIMAVAL 175

Query: 138 FCVSTLVYFTSPGYMNVL 155
                ++ F  P ++ + 
Sbjct: 176 LVSIGMLVFVLPEFVAIY 193


>gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 297

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS- 66
           R    +      LD++  S+ AG  V  A+            +  R+ + T  +      
Sbjct: 149 RRKDMVRALSAFLDLVTLSLAAGGGVEAALKEASLVGDGWAFTALRKALATAEISRVAPW 208

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           +++ ++   + +  +   +  +++    G  +  +L+  +  LR     +A+ +A +   
Sbjct: 209 QTLGQLGAELDVPALGELAASLALAGSEGAKVRASLSAKAATLRANGLAEAQGEANAASE 268

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + S  ++      +  ++    P   +V+
Sbjct: 269 RMSLPVVVM---GLGFMLLIGYPAMAHVM 294


>gi|84495077|ref|ZP_00994196.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649]
 gi|84384570|gb|EAQ00450.1| hypothetical protein JNB_09764 [Janibacter sp. HTCC2649]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL----GLSLSESISRM 72
           +  ++    + AGLP ++A  +      S   R EF  + E        G  + + + R+
Sbjct: 69  DFAELSAVGLDAGLPAAEAARLACDVGGSAATRPEFAVLGEQITAAQGRGSPIGQCLLRV 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                 ++++F +   S+  + G   + A    + +LR+R     +   L+   +AS W+
Sbjct: 129 AE--GDRDLAFLAAAWSLTDEFGVAAAPAARASAAVLRERAESDDRRMVLAAGPRASMWL 186

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  LP     +        +  +       +   V       G +  R ++ 
Sbjct: 187 LTLLPLTGPLVALVLGLP-VGDVYGSTASLVAAVVGLVLTGCGWLWSRTVLR 237


>gi|302036148|ref|YP_003796470.1| type IV pilus biogenesis protein PilC [Candidatus Nitrospira
           defluvii]
 gi|300604212|emb|CBK40544.1| Type IV pilus biogenesis protein PilC [Candidatus Nitrospira
           defluvii]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   ++       AGLP+   + ++  QS +  +R     V  +   G + S+++ 
Sbjct: 68  FTRQFGTMIN-------AGLPLIQCLDILSTQSENKVLRETVGDVKNSVEAGSTFSDALK 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R  +             +    ++GG L   L  L++ +     +K +++          
Sbjct: 121 RHPKV-----FDDLYVNMIHAGEVGGLLDTILTRLAKHIEKAMKLKGQIK---SAMVYPT 172

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
            I+G     +S L+ +  P +  +      G +
Sbjct: 173 AIVGVAVVIISVLMVWVIPVFAQMFTEMSGGKV 205


>gi|300309698|ref|YP_003773790.1| type II secretion system protein [Herbaspirillum seropedicae SmR1]
 gi|300072483|gb|ADJ61882.1| bacterial type II secretion system protein [Herbaspirillum
           seropedicae SmR1]
          Length = 415

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           + +  K+   F              ++AGLP+  A+ + +    +D +      + +   
Sbjct: 71  RRITDKQIVLFTRQL-------ATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVA 123

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL  +++R  +       + F  ++   ++  G L   LA ++        ++ KV+
Sbjct: 124 RGDSLHAALARHPQRFD----ALFCQLVR-AAESAGVLDSMLARIASYREKSLALRGKVR 178

Query: 121 ALSM 124
           A   
Sbjct: 179 AALA 182


>gi|224373390|ref|YP_002607762.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
 gi|223589385|gb|ACM93121.1| msha biogenesis protein mshg [Nautilia profundicola AmH]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-----PVRSEFRRVIETQHLGLSLSESISRMV 73
            L+ +   + AGL    A+ ++VG   D      +R  F  +      GLSL+ +  +  
Sbjct: 70  VLEQMYVMLDAGL----AIDMVVGNIKDTIKNKRLRQIFYSLENDIKAGLSLTSAFEKFE 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           + +         ++I +  + G +L+ A+ +LS IL +  + + +++  +   +   +I+
Sbjct: 126 KELG----KLTVSMIKLGEETG-DLASAIKDLSVILHEILDNRKRLKKAT---RYPMFIV 177

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
            ++      ++ F  P + ++ 
Sbjct: 178 FAMSIAFVIVILFVIPPFKSIF 199


>gi|223365708|pdb|2VMA|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|223365709|pdb|2VMA|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 21  LATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             F + ++   +  G+L   L  L+    +R+  ++K+Q  S
Sbjct: 77  ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117


>gi|206561861|ref|YP_002232626.1| type II secretion system protein F [Burkholderia cenocepacia J2315]
 gi|198037903|emb|CAR53848.1| type II secretion system protein F [Burkholderia cenocepacia J2315]
          Length = 405

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221


>gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740]
 gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes]
          Length = 415

 Score = 43.5 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 33/198 (16%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLG 62
           +  K   K  D  P A   +   + AG+ +   +  +IV  +++ ++  FR V+   + G
Sbjct: 64  IRGKNRVKLEDMIP-AFRQMSLMLNAGISIHATIEDLIVFSANERLKLIFRDVLSGINSG 122

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
            SLSE+           ++   S  +    +  G+LS ALA L+  L +   +++ +   
Sbjct: 123 KSLSEAFGAYQE-----DLGSLSLSLISLGEQTGSLSHALAMLAETLEE---IRSNMAKF 174

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGY--------------MNVLINDP-----RGHM 163
               +    +IG++      L+    P +                 L+         G M
Sbjct: 175 KKALRYPTMVIGAMAIAFVLLIVMVIPKFKAIFDSFNAELPLPTRFLLQTEHILSNYGWM 234

Query: 164 LLGVAAAFMLIGIMVMRL 181
           +L      ++ G+  ++ 
Sbjct: 235 ILAG----LITGVWWIKR 248



 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           FL      +  +   ++AG+ + +A+    G + +  +R +F  V +    G+ L+E+  
Sbjct: 275 FLHAMNQYVSTLSLLLKAGISLEEALESGSGMTGNEHLREKFEGVSDAIRRGVGLTEAFR 334

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                    E   F          G   G+L + L   +           K++  ++   
Sbjct: 335 ---------ETHLFEPTTLQMINTGEQSGDLDQMLGVAANYY--------KMRYDNIIDN 377

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            SA+I   L   ++ +V   + G    + +
Sbjct: 378 LSAYIEPILTAFIAGMVLLLALGIFMPMWD 407


>gi|229589908|ref|YP_002872027.1| putative type II secretion system protein F [Pseudomonas
           fluorescens SBW25]
 gi|229361774|emb|CAY48656.1| putative type II secretion system protein F [Pseudomonas
           fluorescens SBW25]
          Length = 403

 Score = 43.5 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 21/178 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++       
Sbjct: 69  ATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLAGVRADVRGGMRLAEALA-----AR 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            ++       +    +  G+L++ +  L+  + +R N++ K+  L+         + S+ 
Sbjct: 124 PRDFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKI--LTAFIYPGVVGLVSIG 181

Query: 138 FCVSTLVYFTS-------------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +  L Y                PG    ++N        G      ++G      +
Sbjct: 182 IVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFIRAWGWLCFAGIVGGFWSWRL 239


>gi|255657468|ref|ZP_05402877.1| type IV pilus assembly protein [Clostridium difficile QCD-23m63]
 gi|296449063|ref|ZP_06890853.1| type IV pilus assembly protein [Clostridium difficile NAP08]
 gi|296879886|ref|ZP_06903859.1| type IV pilus assembly protein [Clostridium difficile NAP07]
 gi|296262156|gb|EFH08961.1| type IV pilus assembly protein [Clostridium difficile NAP08]
 gi|296429175|gb|EFH15049.1| type IV pilus assembly protein [Clostridium difficile NAP07]
          Length = 402

 Score = 43.1 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 12/175 (6%)

Query: 6   KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
           +KR      D   +        V +G+     +  +  +S++  +R E  R++    +G 
Sbjct: 55  RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAEIKVGS 114

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++++S+       P         +++   +  G L E L +++        +K K++   
Sbjct: 115 TIADSMLSSKSKFP----KLLGAMVAT-GEATGKLDEVLKSMASFYASEHRVKQKLRN-- 167

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A     ++ S    +     F  P  +N +     G  L  +    M  G+ +
Sbjct: 168 -AATYPLIVLISSFIMIFIFTAFMVPKMINSITT--VGATLPLITRIVMGFGMFM 219


>gi|121999149|ref|YP_001003936.1| general secretion pathway protein F [Halorhodospira halophila SL1]
 gi|121590554|gb|ABM63134.1| general secretion pathway protein F [Halorhodospira halophila SL1]
          Length = 410

 Score = 43.1 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 11/153 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VR+GLP+ + +  +  Q+    ++S    V      G SL++++       P  ++
Sbjct: 80  MATLVRSGLPLEEVLRTVSRQTERKRLKSVLLAVRTRVTEGHSLAQALGDFPHIFP--DI 137

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              S       +  G+L   L  L+     R+ M+ KVQ           +   +   + 
Sbjct: 138 YRTSVA---AGEQSGHLEVVLERLAEYAEKRQQMRQKVQLALFYPILLTVMAILVTVALL 194

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
             V    P  + V   D  G  L  +    + +
Sbjct: 195 GYVV---PEVIQVF--DNIGQDLPALTIGLIAV 222


>gi|162454530|ref|YP_001616897.1| hypothetical protein sce6250 [Sorangium cellulosum 'So ce 56']
 gi|161165112|emb|CAN96417.1| pulF [Sorangium cellulosum 'So ce 56']
          Length = 405

 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 13/146 (8%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESI 69
           KF+  F   +D       AGLP+   + ++  Q  + + ++  + +  T   G + S+++
Sbjct: 66  KFIRQFATMID-------AGLPLVQCLEILSNQEPNKIFQAALKDIKNTVEQGATFSDAL 118

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
            R  +         F   +    ++GG L   L  L+  +  R  +  +V+       A 
Sbjct: 119 RRHPKIFD----DLFVN-LVQAGEVGGILDSILNRLAIYIEKRVKLARQVRGALAYPIAV 173

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
             I+  +   + + V  +        
Sbjct: 174 IVIMVVVMVVLMSFVIPSFETMFAEF 199


>gi|157963576|ref|YP_001503610.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157848576|gb|ABV89075.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 406

 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISEQLTSGRPLSSAMNQHPDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|126701135|ref|YP_001090032.1| type IV pilus assembly protein [Clostridium difficile 630]
 gi|254977136|ref|ZP_05273608.1| type IV pilus assembly protein [Clostridium difficile QCD-66c26]
 gi|255094465|ref|ZP_05323943.1| type IV pilus assembly protein [Clostridium difficile CIP 107932]
 gi|255102721|ref|ZP_05331698.1| type IV pilus assembly protein [Clostridium difficile QCD-63q42]
 gi|255308542|ref|ZP_05352713.1| type IV pilus assembly protein [Clostridium difficile ATCC 43255]
 gi|255316216|ref|ZP_05357799.1| type IV pilus assembly protein [Clostridium difficile QCD-76w55]
 gi|255518878|ref|ZP_05386554.1| type IV pilus assembly protein [Clostridium difficile QCD-97b34]
 gi|255652057|ref|ZP_05398959.1| type IV pilus assembly protein [Clostridium difficile QCD-37x79]
 gi|260685031|ref|YP_003216316.1| type IV pilus assembly protein [Clostridium difficile CD196]
 gi|260688689|ref|YP_003219823.1| type IV pilus assembly protein [Clostridium difficile R20291]
 gi|306521793|ref|ZP_07408140.1| type IV pilus assembly protein [Clostridium difficile QCD-32g58]
 gi|115252572|emb|CAJ70415.1| putative type IV pilus secretion protein [Clostridium difficile]
 gi|260211194|emb|CBA66676.1| type IV pilus assembly protein [Clostridium difficile CD196]
 gi|260214706|emb|CBE07364.1| type IV pilus assembly protein [Clostridium difficile R20291]
          Length = 402

 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 12/175 (6%)

Query: 6   KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
           +KR      D   +        V +G+     +  +  +S++  +R E  R++    +G 
Sbjct: 55  RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLARRSTNITLREEINRIVAEIKVGS 114

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           ++++S+       P         +++   +  G L E L +++        +K K++   
Sbjct: 115 TIADSMLSSKSKFP----KLLGAMVAT-GEATGKLDEVLKSMASFYASEHRVKQKLRN-- 167

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             A     ++ S    +     F  P  +N +     G  L  +    M  G+ +
Sbjct: 168 -AATYPLIVLISSFIMIFIFTTFMVPKMINSITT--VGATLPLITRIVMGFGMFM 219


>gi|269796609|ref|YP_003316064.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542]
 gi|269098794|gb|ACZ23230.1| hypothetical protein Sked_33350 [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score = 43.1 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 51/166 (30%), Gaps = 16/166 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +  +   VR+G+P   A A +                     G+     +  +      
Sbjct: 81  VITQVAGLVRSGMPPDRAWAGVGVTVRPD--------------GIPTPADLLHLT--SDA 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            +         +  Q+G  ++  L ++   L       A+        +++A ++  LP 
Sbjct: 125 SQARAVVAACRLAQQVGAPIAPVLDSIVATLVAAAESAAERDTALASPRSTARLLLWLPA 184

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + +      G + +L+      +     A  + +G    R ++ 
Sbjct: 185 AGAVVATVLGAGPVQLLLGGGPAVLAPVTGALLLAVGRWWTRRLVQ 230


>gi|311694494|gb|ADP97367.1| general secretion pathway protein F [marine bacterium HP15]
          Length = 403

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A++    QS  P +RS    +      G +L++S+    R  P    
Sbjct: 73  LATLIQSGIPIEQALSAAAQQSPKPRIRSMLIAIRAKVMEGYTLADSLGEFPRAFP---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + + ++   +  G+L   L  L+    +R+  + K+Q  ++     + +  ++   + 
Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTENRQEARQKIQLAAIYPIILSIVAIAIVVFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           T V    P  ++V +    G  L  +  A + +   +
Sbjct: 188 TYVV---PDIIDVFLKQ--GQELPTLTMAMLAVSEFL 219


>gi|254444010|ref|ZP_05057486.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
 gi|198258318|gb|EDY82626.1| Bacterial type II secretion system protein F domain
           [Verrucomicrobiae bacterium DG1235]
          Length = 422

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV----IETQHLGLSLSESISR 71
                  +   ++AGL +  ++ V+  Q  + V   FR +    +E+   G + S++++ 
Sbjct: 81  LSEFTRKLATLLQAGLTLIRSLEVLKDQEKNVV---FRWIQNSLVESIQSGSTFSDALAN 137

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +     E  F    ++   +  G L  +LA L+  L   + MK++   L+        
Sbjct: 138 FPK-----EFDFLYVNMARAGEASGMLEVSLARLATYLEKTERMKSR---LASAMTYPTV 189

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLIND----------------PRGHMLLGVAAAFMLIG 175
           ++      V  L+ F  P +  + I++                    +         +IG
Sbjct: 190 VMILSSIIVMGLLVFVVPSFKQIFIDEIGEDKMPMLTVYVLMVSEFLVAYWYVVIGAVIG 249

Query: 176 IMVMRLMI 183
           + V + ++
Sbjct: 250 LFVFKKLV 257


>gi|307720366|ref|YP_003891506.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978459|gb|ADN08494.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 412

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           LD I   + AGLP++  +A  V   +D  +++ F ++      G SL  S       +  
Sbjct: 78  LDQIAIMLDAGLPLNYVLAEAVKNQNDEMIKAIFTKINNDIEGGKSLYNSAITFKEQLGF 137

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             +S F        +  G LSE++++L+ IL++  + + K Q  +   +    II ++  
Sbjct: 138 ITLSMFKLG-----EETGRLSESVSHLTSILQNIIDNRKKFQKAT---RYPLIIIFAMGI 189

Query: 139 CVSTLVYFTSPGYMNVL 155
             S ++ F  P + +  
Sbjct: 190 AFSVVIIFVVPQFKSFF 206


>gi|301058210|ref|ZP_07199260.1| putative type IV fimbrial assembly protein PilC [delta
           proteobacterium NaphS2]
 gi|300447712|gb|EFK11427.1| putative type IV fimbrial assembly protein PilC [delta
           proteobacterium NaphS2]
          Length = 402

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 17/148 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+   + ++  Q  +   +   ++V+     G SL+ES+ 
Sbjct: 68  FTRQFSTMID-------AGLPLVQGLTILTEQMENKTFKKILKQVVTDVEGGASLAESLQ 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +      V+  +       ++GG L   L  LS  +   + +K++++         A
Sbjct: 121 KHPKVFDSLFVNLVA-----AGEVGGILDTILQRLSTHIEKAQKLKSRIKGAMT---YPA 172

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158
            ++      VS ++ F  P     L  D
Sbjct: 173 IVVAIAILVVSVIMIFVIP-VFESLFRD 199


>gi|17388923|gb|AAF36471.2|AF127982_1 GspF [Burkholderia cenocepacia]
          Length = 405

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221


>gi|134294191|ref|YP_001117926.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
 gi|134137348|gb|ABO53091.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
          Length = 405

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   LL +    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPLLTI--VMMALSEFV 221


>gi|90580162|ref|ZP_01235969.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14]
 gi|90438464|gb|EAS63648.1| putative MSHA biogenesis protein MshG [Vibrio angustum S14]
          Length = 408

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 10  AKFLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           A F    P   L I  R +    +AG+P+  A   +   +S P+    +  +E   L L+
Sbjct: 58  ALFQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPL---LKTTLEALTLDLT 114

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              ++S  ++  P      F ++I V  +  G L + L  L+       N + +++    
Sbjct: 115 NGRALSVAMQQHPRVFSRLFISMIHV-GENTGRLDQVLLQLANYYEQEMNTRRQIK---S 170

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             +   +++ ++   +  L     P + ++ 
Sbjct: 171 AMRYPTFVLTAIVIAMGILNTKVIPQFASMF 201


>gi|289424130|ref|ZP_06425913.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|289154827|gb|EFD03509.1| type II secretion system F domain protein [Propionibacterium acnes
           SK187]
 gi|313792522|gb|EFS40608.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803523|gb|EFS44705.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313814176|gb|EFS51890.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313839670|gb|EFS77384.1| type II secretion system F domain protein [Propionibacterium acnes
           HL086PA1]
 gi|315078859|gb|EFT50877.1| type II secretion system F domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327457368|gb|EGF04023.1| type II secretion system F domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 300

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 165

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 1   MKHLIKKRTAKFLDD----FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE--FRR 54
           M++ + +R      +     P  LD++  +V AGLP   A+   V   +     E   RR
Sbjct: 1   MRNRLTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTGAEETALRR 60

Query: 55  VIETQHLGLSLSESISRM---VRYMPLQEVSFFSTVISVQSQLGGN 97
           V      G S  E+   +               +  + + ++ G  
Sbjct: 61  VAVQLSWGSSPEEAWRDLTGESERWDE-----LAEALLLSTRTGAP 101


>gi|323495863|ref|ZP_08100931.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
           21326]
 gi|323319079|gb|EGA72022.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
           21326]
          Length = 408

 Score = 43.1 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++++    G  LS+S+         Q  
Sbjct: 77  LATMLVTGVPLIQALKLVADNHRKAEMKSILAQIVKGVESGTPLSKSM-----RTASQHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL E    ++      + ++AKV    +       ++ +      
Sbjct: 132 DSLYIDLVTSGEQSGNLPEVFERIATYREKSEQLRAKVIKALIYPSM---VMLTALSVTY 188

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 189 LMLTVVIPEFESMF 202


>gi|304315796|ref|YP_003850941.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777298|gb|ADL67857.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 297

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRR---VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           + +A+       S+P++S   R   + E   + +   E +  M       E   F     
Sbjct: 144 IINALKSTAPYISNPLKSIIERNVFLFEKTQMNV--LECLDNMASEAGNNEFRKFINFAK 201

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS- 148
           +  + GGN ++A+A L        +++A     S  A   +++I  +      L+   S 
Sbjct: 202 MSVKYGGNFNKAIAKLKDQGEKLYSLEA---IKSANASVGSFVILLMIVINLLLMVNISS 258

Query: 149 -PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            P  ++++ +   G ++    A  ++ G+ +++ +
Sbjct: 259 DPDIVDIIKSTVTGQVIAVSNAVSIIFGLYMIKNI 293


>gi|317968405|ref|ZP_07969795.1| type IV pilus assembly protein PilC [Synechococcus sp. CB0205]
          Length = 413

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+  ++ ++  Q   P+ +     V    + G SL  ++    R       
Sbjct: 82  LAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRSWPRV-----F 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +  +    + GG L E+L  L+++L     ++ +++           ++        
Sbjct: 137 DKLTIAMVEAGEAGGVLDESLRRLAKLLEGNARLQNQIKGAMG---YPVAVLAIAILVFL 193

Query: 142 TLVYFTSPGYMNVL 155
            +  F  P +  + 
Sbjct: 194 GMTIFLIPTFAGIF 207


>gi|314964234|gb|EFT08334.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA1]
          Length = 196

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 40  RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 99

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 100 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 158

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 159 VEAQTASESLTIWMV--IPVLVLGLVLITPP 187


>gi|126176022|ref|YP_001052171.1| type II secretion system protein [Shewanella baltica OS155]
 gi|125999227|gb|ABN63302.1| type II secretion system protein [Shewanella baltica OS155]
          Length = 406

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS S+++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLIAIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured
           verrucomicrobium HF0070_15G23]
          Length = 414

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSD--PVRSEFRRVIETQHLGLSLSESI 69
           L D  N    +   ++AG+P++ A+ ++   +S    P+ S    ++     G +LS ++
Sbjct: 73  LQDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVSV--SLLGDVKEGKNLSRAM 130

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                  P   ++          + GG+L E L  L+        ++ KV          
Sbjct: 131 KSHAEVFPAMYINMV-----RAGESGGSLVEVLERLADHYERFAEVRQKV---ISALVYP 182

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A++IG     +   + +  P +M + 
Sbjct: 183 AFVIGLGFILIFVFMSYILPKFMKIF 208


>gi|158320935|ref|YP_001513442.1| hypothetical protein Clos_1906 [Alkaliphilus oremlandii OhILAs]
 gi|158141134|gb|ABW19446.1| hypothetical protein Clos_1906 [Alkaliphilus oremlandii OhILAs]
          Length = 286

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92
           + D  +      S+P+RS    ++      ++  + +  +   + + E+  F   + +  
Sbjct: 136 IFDCFSKTSAYVSEPLRSYIDIMVHEHKYKINPVQCLENLKDKLEISELKLFIENLKICY 195

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
             GGN+   +      +  + + + +            + +  L    + + +  +  Y 
Sbjct: 196 IHGGNIIGLIDAFIEEISQQNDDEDEENTEDSILNMGLYFL--LMLNFTVIYFLINSSYR 253

Query: 153 NVLINDPRGHMLLGV 167
             ++    G ++  +
Sbjct: 254 YSILEPVWGQIVFAL 268


>gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1]
 gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1]
          Length = 296

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 13/179 (7%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65
           R        P A++ +     AG+  ++    +           E R +I    + G  L
Sbjct: 115 RRRDIETTLPYAINYLAAMSTAGITPAEVFRQLGNSTIYGESSVEARYIILEVDVFGRDL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQA 121
            E++  +    P   +  F          G N+S+     +       R  +       A
Sbjct: 175 IEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLA 234

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI-------NDPRGHMLLGVAAAFML 173
           L  E+  +A + G+L   +   +     G    L          P G ++  V    M 
Sbjct: 235 LIAESYVTALVAGTLFMILIQSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLIDSMT 293


>gi|107021572|ref|YP_619899.1| general secretion pathway protein F [Burkholderia cenocepacia AU
           1054]
 gi|116688084|ref|YP_833707.1| general secretion pathway protein F [Burkholderia cenocepacia
           HI2424]
 gi|170731434|ref|YP_001763381.1| general secretion pathway protein F [Burkholderia cenocepacia
           MC0-3]
 gi|254246657|ref|ZP_04939978.1| General secretion pathway protein F [Burkholderia cenocepacia
           PC184]
 gi|11559477|dbj|BAB18790.1| GspF [Burkholderia cepacia]
 gi|105891761|gb|ABF74926.1| General secretion pathway protein F [Burkholderia cenocepacia AU
           1054]
 gi|116646173|gb|ABK06814.1| general secretion pathway protein F [Burkholderia cenocepacia
           HI2424]
 gi|124871433|gb|EAY63149.1| General secretion pathway protein F [Burkholderia cenocepacia
           PC184]
 gi|169814676|gb|ACA89259.1| general secretion pathway protein F [Burkholderia cenocepacia
           MC0-3]
          Length = 405

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +A+ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDEALGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++ +  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALGQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSEFV 221


>gi|256821932|ref|YP_003145895.1| type II secretion system protein [Kangiella koreensis DSM 16069]
 gi|256795471|gb|ACV26127.1| type II secretion system protein [Kangiella koreensis DSM 16069]
          Length = 414

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+  +  +I     +P V+     +      G   ++S+    +Y  
Sbjct: 80  FLRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHPKY-- 137

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L + L  ++      + +K+K+++  M     A +I    
Sbjct: 138 ---FDDLVCDLIHAGEQSGTLEQMLDRIATYKEKTEALKSKIKSAMM---YPAAVITVSL 191

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
              + L+ +  P + ++  N       L      M
Sbjct: 192 AVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSM 226


>gi|223365710|pdb|2VMB|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|223365711|pdb|2VMB|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 21  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             F ++++   +  G+L   L  L+    +R+ M++K+Q  S
Sbjct: 77  ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117


>gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 291

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 25  RSVRAGLPVSDAVAVIVGQSS---DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
             + AGL +   + +I  Q       + +   R       G   ++++  +     +  +
Sbjct: 155 MLMEAGLSLERVLRIIGVQGRPLLPILIARIDRFNRLMKSGAERTQALDELGENKRIPVL 214

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  ++   SQLG  +S +L  +    ++ +  + + +   + AK +  ++  +   + 
Sbjct: 215 RSYVVLMKQSSQLGAGVSHSLDQIIDEAQNVERNRIREETNRIGAKMTVIMMAFMLPALF 274

Query: 142 TLV 144
            L+
Sbjct: 275 ILI 277


>gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
 gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
          Length = 311

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH-LGLSL 65
           +R    + + P  L  +  +VR+G+ V+ A   I  +    +    RR+    + LGL L
Sbjct: 72  RRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLLGLDL 131

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I  ++R +P +   +F   I    + GG   E L   S + R  +  + + +  +++
Sbjct: 132 LDAIRLVIRELPKETRKYF-YFIEEAYESGGRAMEVLDKASELARRIREFELE-REKTLK 189

Query: 126 AKASAWIIGSLPFCVSTLVYF 146
            +    +   L F  +  + +
Sbjct: 190 NQGFIILFSVLIFVATAAILY 210


>gi|73542915|ref|YP_297435.1| general secretion pathway protein F [Ralstonia eutropha JMP134]
 gi|72120328|gb|AAZ62591.1| General secretion pathway protein F [Ralstonia eutropha JMP134]
          Length = 405

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60
           + L  +  A F              + +GLP+ +A+  +  Q+  P   E    +     
Sbjct: 61  RRLSTQEQALFTRQL-------ASLIVSGLPLDEALGALADQAERPYVHELLAGIRAEVM 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNALTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      +  ++   V  L+ +  P  ++V  N      L  +    + +   V
Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTK--QKLPTLTIVMLALSDFV 221


>gi|303241413|ref|ZP_07327916.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302591022|gb|EFL60767.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 309

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 2/177 (1%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSE 67
             +   +   AL II  S      +  AV   +G  + P+ + F+  +   ++  +++ +
Sbjct: 128 KKQVNAELETALSIITSSYFRNESIITAVQENIGYINPPISNAFKAFLTQANMINVNVKQ 187

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++ M   +     S +   + +  Q    L   L  +   L D + + A++  L  E  
Sbjct: 188 ALNDMKSKLNHHVFSEWVDAM-IACQEDKTLKTTLTPIISKLSDVRIVSAELDYLMYEPL 246

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                +  L      L+YF +  +  VL++   G  +L V    + + +  +  +  
Sbjct: 247 KEFITMALLLVLNIPLIYFLNKDWFRVLVDTVLGKGILAVCTLAIFVSLAAVIRITR 303


>gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
 gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
          Length = 401

 Score = 43.1 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 71/195 (36%), Gaps = 19/195 (9%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQHL 61
           L  KR  K      +    +   ++AG+ +  ++ +I  +       +  ++ ++ +   
Sbjct: 50  LKSKRKMK-ASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTDKETYQNLLNSIRQ 108

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G+ LSE++    R  P+         +   ++  GNL +    ++        +  KV+ 
Sbjct: 109 GIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVRN 163

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA---------AAFM 172
             +     + ++  +   + + +        + + + P   ++L               +
Sbjct: 164 AMIYPIVLSVLLVGVIIFILSYLVPQFQDIFDTMESLPLPTVILLGLSGGIRKYWPFILL 223

Query: 173 LIGIMV--MRLMINF 185
           ++  ++  +RL++  
Sbjct: 224 ILAAVIFGIRLILRI 238


>gi|313824568|gb|EFS62282.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA2]
          Length = 300

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|319789966|ref|YP_004151599.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
 gi|317114468|gb|ADU96958.1| Type II secretion system F domain protein [Thermovibrio
           ammonificans HB-1]
          Length = 404

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 31/181 (17%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPLQEVS 82
           + AG+P+  A+ +I  Q  +      R+++E        G   S +ISR           
Sbjct: 78  IHAGIPLVQALRIIKEQLPN---RRLRQIVEEIASFIEEGGKFSTAISRYRDIFG----D 130

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            + +++    + G  L E L  L+  L   + ++ KV++          +   +   +  
Sbjct: 131 LYISMVRAAEEAG-TLEETLKRLADYLEKVEKLRGKVKSALFYPVFVFIVAMLIVTGILV 189

Query: 143 LVYFTSPGYMNVL-----------------INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            V  T       +                 + D  G ++L +     +IG + +R +  F
Sbjct: 190 FVIPTFEQLYADMGGELPALTQMVIKVSNWVRDYAGWIVLFIVVF--IIGFVQLRRLEKF 247

Query: 186 D 186
            
Sbjct: 248 R 248


>gi|225570080|ref|ZP_03779105.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
           15053]
 gi|225161550|gb|EEG74169.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
           15053]
          Length = 394

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP--------VRSEFRRVIE 57
           K++  + L D+P  ++     + AG+ V +    IV                 E +  + 
Sbjct: 238 KEKRLQMLQDYPELVNKFTLFLGAGMTVRNTWRKIVRDYEKQTEEWGVRYAYEEMKVTLN 297

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNMK 116
               G++ +ES  R  R+  +QE   F  ++S   + G  +L   L   +    + +  +
Sbjct: 298 EMQSGITEAESYERFGRHCKVQEYVKFGALLSQNLRKGTKDLVHLLRMDAVQAFEERKTR 357

Query: 117 AKVQALSMEAKASAWIIGSLPFCVST 142
           A+        K        LP  +  
Sbjct: 358 ARRLGEEAGTKL------LLPMFLML 377


>gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
          Length = 415

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V AG+ + DA+ ++  Q  +  +      V +    G+S+SE++S+     P
Sbjct: 80  FCRQLGAMVNAGVGIIDALDIVAEQMPNKKLAEAVAEVAKEVSEGMSMSEAMSKRANIFP 139

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                    +++V  + G  L  AL   S        +K+K++     A    +++    
Sbjct: 140 ----ELVVNLVAVGEETG-ELDRALLRASEYYEKLAMIKSKIK---SAAFYPVFVLVIAT 191

Query: 138 FCVSTLVYFTSPGY 151
             V+ ++YF  P +
Sbjct: 192 VIVTGILYFLVPTF 205


>gi|15895249|ref|NP_348598.1| hypothetical protein CA_C1978 [Clostridium acetobutylicum ATCC 824]
 gi|15024959|gb|AAK79938.1|AE007702_5 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
 gi|325509395|gb|ADZ21031.1| membrane protein [Clostridium acetobutylicum EA 2018]
          Length = 279

 Score = 43.1 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIET 58
           + +L  K    K   D  +  D+I     AG+ +  A+  +     S  ++    R+   
Sbjct: 119 LNYLSNKDDKNKIRLDLADVYDLITIQTIAGVSIGHALLEVNTVCKSKRLKKSLIRLAAK 178

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
            +L  ++ +++    +   + E+  F  VI      G +  EAL + S  L
Sbjct: 179 INLSKNIEKALDEFNQEYDMHEIDAFVAVIKESITSGVS-EEALDDQSSAL 228


>gi|206900573|ref|YP_002250891.1| general secretion pathway protein F [Dictyoglomus thermophilum
           H-6-12]
 gi|206739676|gb|ACI18734.1| general secretion pathway protein F [Dictyoglomus thermophilum
           H-6-12]
          Length = 400

 Score = 43.1 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 16  FPNALD---IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            P  +         +R+G+ +++ ++ +  Q+ +   R     V +    GLSLSE++SR
Sbjct: 60  LPELVLFTSQFATLLRSGIILTECLSTLATQTDNAYFRDVLFDVRKNVDAGLSLSEALSR 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P      F +++    ++ G+L   L  LS+    +  ++ K+++ +        
Sbjct: 120 YQNVFP----KIFISLVR-AGEVTGSLDVMLDKLSKYFDLQHELREKIKSATT---YPLI 171

Query: 132 IIGSLPFCVSTLVYFTSPGY 151
           +  +    V  ++ F  P +
Sbjct: 172 VTIAAIIVVIFMLTFVIPTF 191


>gi|325275692|ref|ZP_08141581.1| general secretion pathway protein F [Pseudomonas sp. TJI-51]
 gi|324099178|gb|EGB97135.1| general secretion pathway protein F [Pseudomonas sp. TJI-51]
          Length = 401

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLS 66
           R +                ++AGLP+++A+  +  Q +    R   R V E    G +L+
Sbjct: 63  RRSLLTRQL-------ATLLQAGLPLTEALQAVAEQGTRRQERQVLRGVAERVAEGHALA 115

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++++   R  P+   +  +       +  G L++ L  L+    D + ++ KVQ      
Sbjct: 116 QALAHYPRAFPVIYRATVAAA-----ERSGRLADVLERLAAHGEDEQALRQKVQL---AM 167

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
                ++      V  L+ +  P  +     D
Sbjct: 168 VYPVILLAVSLLVVGFLLGYVVPDVVQAFSRD 199


>gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 304

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GL 63
            K+R   F       LD++  ++  G  V +A++   G S        R  +E+  L G+
Sbjct: 154 AKERRRDFRHVVSAFLDLVSMNLAGGRGVPEALSAAAGLSDGWAMVRLRDAMESARLQGV 213

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +   ++  +   M ++E+S  +  +++ ++ G  + ++LA  +  +R R+   A+ +A  
Sbjct: 214 TPWAALGDLGDEMAVKELSDLAAALALVAEDGAKVRQSLAARAASMRQRELTDAEGRAEQ 273

Query: 124 MEAKA 128
                
Sbjct: 274 QSQSM 278


>gi|145596549|ref|YP_001160846.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440]
 gi|145305886|gb|ABP56468.1| hypothetical protein Strop_4038 [Salinispora tropica CNB-440]
          Length = 331

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 55  VIETQHLGLSLSESIS-RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           +      GLS+ +S +           +    + + +  + G  L++ L  +    R   
Sbjct: 197 LAADLRAGLSVGQSTALSAAGRSGSTLIR---SAVRLADRTGAPLADLLERIDVDARAAD 253

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A   A +  A+A+AW++ +LP     L Y      + VL++   G     +A    +
Sbjct: 254 RGRATAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHSAVGGSCAVLAVMLQV 313

Query: 174 IGIMVMRLMINFD 186
            G+     +    
Sbjct: 314 AGLFWAERLTAIR 326


>gi|84386331|ref|ZP_00989359.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
 gi|84378755|gb|EAP95610.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
          Length = 406

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V++G+P+ + +  +  QS  P +R+    V      G SL++S+S           
Sbjct: 75  ISTLVQSGMPLEECLKAVAEQSEKPRIRTMLLAVRSKVTEGYSLADSLSDYPHIFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK---------VQALSMEAKASAWI 132
             F  +++   +  G+L   L  L+    +R+ M++K         V  +      S  +
Sbjct: 131 ELFRAMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMIYPIVLVVFAVTIVSFLL 189

Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +P  V  ++      P     L+         G+    + IG++V+
Sbjct: 190 ATVVPKIVEPIIQMGQELPQSTQFLLASSEFIQNWGIQLLVLTIGVIVL 238


>gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
 gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
          Length = 274

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD---PVRSEFRRVIETQHLGLSL 65
             K L  FP+ + I    + A +  + AV   +    D   P+  EF    +      S+
Sbjct: 127 KEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEFIVNCDI----HSV 182

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            ++I ++   + +  V    +++ +  + G ++ E+       +R+   M+ +     + 
Sbjct: 183 EKAIDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFERQIDKVRE---MQLEAIMNRIA 239

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +    ++   P  ++ +  F  P + ++
Sbjct: 240 KRQLLAMVLQGPLLLTLIGAFGLPTFYSM 268


>gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis]
          Length = 410

 Score = 42.8 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+  A  ++     +P  +E    I      G SLS + S   +Y      
Sbjct: 79  LSTMINAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + ++ KV+       +   +   L F + 
Sbjct: 134 DRFYCNLVAAGETGGVLESLLDKLAIYKEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMM 193

Query: 142 TLVYFTSPGYMNVL 155
             V          +
Sbjct: 194 IFVLPAFKEVYANM 207


>gi|281357007|ref|ZP_06243497.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
 gi|281316565|gb|EFB00589.1| Type II secretion system F domain protein [Victivallis vadensis
           ATCC BAA-548]
          Length = 419

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 10/155 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+  ++  +  Q+ +P V+    +  ET   G + +E++++  R      +
Sbjct: 86  LAILLSAGLPLIRSLHTLERQAKNPAVKIVLSKTAETVEGGATFAEALAQHPRSFDKLYL 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +          +  G +   L  L+  +     +  KV+           ++      V 
Sbjct: 146 NMV-----RAGEASGAMEIILDRLASFMEKAARISGKVK---SAMIYPCVVLTIALLAVV 197

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+ F  P     +  +  G          +++GI
Sbjct: 198 GLMIFIVPN-FQKIFTELLGPNEPLPDITLLVMGI 231


>gi|94265745|ref|ZP_01289481.1| type II secretion system protein [delta proteobacterium MLMS-1]
 gi|93453720|gb|EAT04098.1| type II secretion system protein [delta proteobacterium MLMS-1]
          Length = 402

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F       +D       AGLP+  ++ ++  Q  +P  +   R V      G + ++++ 
Sbjct: 68  FTRQLSTMID-------AGLPLVQSLQILGEQQENPTFKKVLRAVRSEVETGSTFADALK 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +                +    ++GG L    A L+  +   + +K KV+        S 
Sbjct: 121 KHPHI-----FDNLYCNMMEAGEVGGILDTICARLATFMEKAQALKKKVKGAMTYPIISL 175

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I   +   +   V           
Sbjct: 176 CIALIVLAVMLIFVVPVFEEMFADF 200


>gi|289427557|ref|ZP_06429270.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|289159487|gb|EFD07678.1| type II secretion system F domain protein [Propionibacterium acnes
           J165]
 gi|313806903|gb|EFS45401.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313821487|gb|EFS59201.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313826239|gb|EFS63953.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314926289|gb|EFS90120.1| type II secretion system F domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314980210|gb|EFT24304.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314987066|gb|EFT31158.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990441|gb|EFT34532.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315083128|gb|EFT55104.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088060|gb|EFT60036.1| type II secretion system F domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327333719|gb|EGE75436.1| membrane associated protein [Propionibacterium acnes HL096PA3]
 gi|327444422|gb|EGE91076.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA2]
 gi|328757929|gb|EGF71545.1| type II secretion system F domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332674442|gb|AEE71258.1| type II secretion system protein [Propionibacterium acnes 266]
          Length = 300

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|261250569|ref|ZP_05943144.1| general secretion pathway protein F [Vibrio orientalis CIP 102891]
 gi|260939138|gb|EEX95125.1| general secretion pathway protein F [Vibrio orientalis CIP 102891]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 77  LSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHIFD---- 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++S   +  G+L   L  L+    +R+ +++K+Q    +A     ++     C+ 
Sbjct: 133 ELFRSMVS-AGEKSGHLDSVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVCIV 187

Query: 142 TLVY 145
             + 
Sbjct: 188 AFLL 191


>gi|153822239|ref|ZP_01974906.1| type IV pilus assembly protein TapC [Vibrio cholerae B33]
 gi|126520249|gb|EAZ77472.1| type IV pilus assembly protein TapC [Vibrio cholerae B33]
          Length = 364

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|257051104|ref|YP_003128937.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
 gi|256689867|gb|ACV10204.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
          Length = 568

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 12/183 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSE 67
                 +  +AL +  R V  G  V  A+     Q          +    Q  L LS+ +
Sbjct: 345 IRDVESNLTDALYLTGRLVDDGKSVETAIQRAGDQVPAATGELLEQAAGLQRRLHLSVHD 404

Query: 68  SIS---RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK----NMKAKVQ 120
           +      +V  +P   V     ++++ ++ G     A+ +++  L + +      + ++ 
Sbjct: 405 AFLGEYGVVSDVPSPRVRATVELLAIAAEQGAPAGRAIVSMADHLDELRDVEARTRRQLS 464

Query: 121 ALSMEAKASAWIIGSLP----FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            ++     +A   G +       ++  +       +      P   + L + A  + +  
Sbjct: 465 TITETIDHTATFFGPMVAGATVGLAGGLSGDGTTAIEGATTLPTDQLGLVIGAYVVSLSF 524

Query: 177 MVM 179
           +++
Sbjct: 525 ILV 527


>gi|171059294|ref|YP_001791643.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170776739|gb|ACB34878.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 382

 Score = 42.8 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 59/136 (43%), Gaps = 15/136 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +R+GL + +A+  +  +      +  +R++E    G +LS ++    +        
Sbjct: 51  LALMLRSGLSLIEALRTVAERQHGSAATAMQRLLEALSQGETLSTALQSSGQ-------- 102

Query: 83  FFSTVISV---QSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            FST +      S+L G+L+++L   ++     + +++++ +  +       +I      
Sbjct: 103 -FSTAMLACVKASELTGDLADSLGRFAQNATRMRQLRSRLVSACV---YPGLLITVASLV 158

Query: 140 VSTLVYFTSPGYMNVL 155
           V  L+ +  P +  VL
Sbjct: 159 VLFLLIYVVPRFAMVL 174


>gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
 gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
          Length = 485

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVR-------- 49
           +   +++  + L D+P  +      + AG+    A   IV          +         
Sbjct: 307 REREQQKQEQLLLDYPEIMMKYTLLLSAGMTTYGAWERIVKDYNTRRERELGGTRRNKKK 366

Query: 50  --------------SEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
                          E         LG+S S +  R  R   L     FST+I    + G
Sbjct: 367 LSKSKSMKSMRYAYEEMIITKNEIDLGVSESVAYERFGRRCKLLSYLRFSTIIVQNMKKG 426

Query: 96  GN-LSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
              +   L   S        +  K QA  +  +AS  ++  +   +  ++       M  
Sbjct: 427 NKGMIPMLEAESVQ----ALLDRKEQAKRLGERASTKMLMPMMGMLCIVIAILMVPAMMS 482

Query: 155 L 155
           +
Sbjct: 483 M 483


>gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
 gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
          Length = 628

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 4/173 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  + ++   K  +  P+    +     AGL V + + V+       +  E   +     
Sbjct: 409 LVEIKERVMRKTEERIPDVFSELAMLNEAGLTVLEGLRVLSQTEMGLLTREIAVMRREIE 468

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ +  +  R+   +    +S    V+    +    + +A   ++R        K +++
Sbjct: 469 WGVLIPRAFIRLGIRVKSDILSKIVPVVVKALETAPTIKDAFNVVARYADTEVAFKKRMR 528

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           + ++       II        T  Y     +    +    G  + G A +F +
Sbjct: 529 SSTL---LYVIIIYMCIVVFLTTTYMIITSFFKPFVG-LSGVSVGGYALSFDV 577



 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQH 60
            L K+R  +     P+A+ ++      G+P+ + +  +         +  EF  ++E   
Sbjct: 127 FLAKRRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVAESKHIFGELSREFMIIVEMVD 186

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN 104
           +   ++ + +  +    P  ++S F   +    + GG LSE L  
Sbjct: 187 VFKRNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLRR 231


>gi|240136824|ref|YP_002961291.1| Type II secretion system protein [Methylobacterium extorquens AM1]
 gi|240006788|gb|ACS38014.1| Type II secretion system protein [Methylobacterium extorquens AM1]
          Length = 404

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L      V AGL V  A+ ++  Q+S  ++     ++E    G SLS +++   +  P 
Sbjct: 71  FLREFGTLVGAGLTVDRALRLVERQASAALKPVLADILERVVAGASLSRAMAAHPQAFP- 129

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLP 137
            ++      I    +  G L   L +L+  +  R  ++  +  A+   A      +G+L 
Sbjct: 130 PDM----VDIVRAGEATGTLVAVLGSLTGSIERRDAVRRHLTSAMIYPALLVLMAVGTLV 185

Query: 138 FCVSTLVYFTSPGY------------MNVLINDPRG--HMLLGVAAAFMLIGIMVMRL 181
             V  LV   +P +            +   + D  G     L   AA +++G++    
Sbjct: 186 MIVVVLVPALAPLFEGSGRAPPLTIRVAAALGDWVGAFWPWLLGGAAVIVLGLVRSWR 243


>gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
 gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
          Length = 413

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 18/192 (9%)

Query: 1   MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           +K   K+R  +     F              ++AGLP+  A  ++    S+P  +E   +
Sbjct: 62  VKATKKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +      +    ++ +     P +    F   +    + GG L   L  L+      + +
Sbjct: 112 LMQVRADVEQGSALGKSFAKYP-KYFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAI 170

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFML 173
           K KV+       +   +  +L F +   V          +  +  G   +++ ++  F+ 
Sbjct: 171 KKKVKTALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTQIVMDISKIFVE 230

Query: 174 IGIMVMRLMINF 185
            G +++ ++I F
Sbjct: 231 YGWLMIVMVIAF 242


>gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 422

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F       +D       AGLP+  ++ V+  Q ++P +R     + ++   G + SE+++
Sbjct: 82  FTRQLATLID-------AGLPLLQSLNVLAKQEANPNLRVTIEALGDSVQGGSTFSEALA 134

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  R         F  ++    +LGG L   L  L+      + +K+KV +  +      
Sbjct: 135 QHPRIFD----RLFVNMVK-AGELGGVLEVVLNRLAEYQEKAQKLKSKVISAMVYPSIVL 189

Query: 131 WIIGSLPFCVSTLV 144
           +I   +   +  ++
Sbjct: 190 FIAVGIVIFLMLVI 203


>gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
 gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain
           protein [Actinomyces odontolyticus F0309]
          Length = 425

 Score = 42.8 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 14/172 (8%)

Query: 23  IVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           +   +RAG P S A  +            V  S   V  E+ R             +   
Sbjct: 111 VATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSLRRAERAPGV 170

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +     +  +        LG  L++ L  +   + D + ++   +  +     SA 
Sbjct: 171 AASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVAAAGPLMSAR 227

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++ +LP                  +    G M   V       G+   R ++
Sbjct: 228 VLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVAWAAGVASCRRIL 279


>gi|318042985|ref|ZP_07974941.1| pili biogenesis protein [Synechococcus sp. CB0101]
          Length = 430

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+  ++ ++  Q   P+ +     V    + G SL  ++ R  +       
Sbjct: 99  LAALVDAGVPIVRSLDLMARQQRMPLFKRALTAVSTDVNQGGSLGAALRRWPKV-----F 153

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +  +    + GG L E+L  L+++L     ++ +++       A   I   +   ++
Sbjct: 154 DKLTIAMVEAGEAGGVLDESLRRLAKLLEGNAKLQNQIKGAMGYPVAVLVIAVLVFLGMT 213

Query: 142 TLVYFTSPGYMNVL 155
             +  T  G    L
Sbjct: 214 IFLIPTFAGIFEDL 227


>gi|237741036|ref|ZP_04571517.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13]
 gi|229431080|gb|EEO41292.1| general secretion pathway protein F [Fusobacterium sp. 4_1_13]
          Length = 346

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   +++ +    G S+ ES     R      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVNGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPDFITIFEENQVELPLITKILLFI 157


>gi|328950485|ref|YP_004367820.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450809|gb|AEB11710.1| Type II secretion system F domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 406

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+  A+A++  Q+ +   +   + +      G   S+++ +          
Sbjct: 74  LATMLSAGLPIVQALAILERQAENKKFKGILKEIRTDVEGGEPFSDALKKHSA------F 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L  L+  L     ++ K++         A ++        
Sbjct: 128 TRLYINLVRAGETSGTLDLVLERLATFLEKELELRGKIR---SAMTYPAIVLVFAIGVTY 184

Query: 142 TLVYFTSPGYMNVLIN 157
            L+    P +  +L +
Sbjct: 185 FLLAGIVPQFAQILTD 200


>gi|302388991|ref|YP_003824812.1| hypothetical protein Toce_0410 [Thermosediminibacter oceani DSM
           16646]
 gi|302199619|gb|ADL07189.1| hypothetical protein Toce_0410 [Thermosediminibacter oceani DSM
           16646]
          Length = 300

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 64/152 (42%), Gaps = 4/152 (2%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           + +A+       S+P+RS  +R V   +    S++E +  +   +  +E   F     + 
Sbjct: 147 IINALKSTAAYVSEPLRSFLKRNVFLFEKTQRSIAECLDNIAFEVGDKEFRKFINFAKMN 206

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS-PG 150
           ++ GGN  +AL  L        +++A   A +     S  I+  +   +  ++  ++ P 
Sbjct: 207 AKYGGNFGKALTKLREQAEKLHSLEAIESANAFVG--SLVILFMIVINLVLMLNVSNDPE 264

Query: 151 YMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
               + N   G  +    AA ++ G+ +++ +
Sbjct: 265 VALAIRNTVTGQAIAISNAAAIIFGLYMIKNI 296


>gi|256846649|ref|ZP_05552105.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2]
 gi|294784358|ref|ZP_06749649.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27]
 gi|256717869|gb|EEU31426.1| general secretion pathway protein F [Fusobacterium sp. 3_1_36A2]
 gi|294487930|gb|EFG35285.1| general secretion pathway protein F [Fusobacterium sp. 3_1_27]
          Length = 346

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   +++ +    G S+ ES     R      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPDFITIFEENQVELPLITKILLFI 157


>gi|158522859|ref|YP_001530729.1| type II secretion system protein [Desulfococcus oleovorans Hxd3]
 gi|158511685|gb|ABW68652.1| type II secretion system protein [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+   + ++  Q  +P  R   + + ++   G +L++++ 
Sbjct: 68  FARQFSTMID-------AGLPIVQCLDILFSQEDNPTFRKILKSIKDSVEGGQTLADAMK 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                      + F  +I+   + GG L   L  LS  +     +K +V+ 
Sbjct: 121 PFPDQFD----NLFVNMIA-AGEAGGILDVILKRLSAYMEKAAKLKRQVKG 166


>gi|120554274|ref|YP_958625.1| general secretion pathway protein F [Marinobacter aquaeolei VT8]
 gi|120324123|gb|ABM18438.1| general secretion pathway protein F [Marinobacter aquaeolei VT8]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 11/158 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+PV  A++    QS+ P +RS    +      G +L++S     +  P    
Sbjct: 73  LATLIQSGIPVEQALSAAAQQSTKPRIRSMLIAIRAKVMEGYTLADSFGEFPKAFP---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + + ++   +  G+L   L  L+     R+  + K+Q  ++     + +  ++   + 
Sbjct: 129 RLYRSTVA-AGEHAGHLDLVLNRLADYTESRQEARQKIQLAAIYPIILSVVAIAIVVFLL 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA--AFMLIGIM 177
           T V    P  + V +   +    L VA       +G  
Sbjct: 188 TYVV---PDIIEVFLKQGQELPGLTVAMLSVSEFLGSF 222



 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ +A+ +     S D +R E R        G SL  S+ +   + P+  +
Sbjct: 276 LSILTTSGVPLVEAMRIAGEVLSNDYLRQELREAARKVSEGGSLHRSLDQTGYFPPMM-L 334

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              ++      +  G L   L   +R+           Q  ++++K +A +    P  + 
Sbjct: 335 HMIASG-----EASGELDSMLERTARM-----------QENTLQSKIAAIVGLFEPMMLL 378

Query: 142 TL 143
            +
Sbjct: 379 FM 380


>gi|134293926|ref|YP_001117662.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
 gi|134137083|gb|ABO58197.1| general secretion pathway protein F [Burkholderia vietnamiensis G4]
          Length = 405

 Score = 42.8 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ ++++V+  Q+  + VR     +     
Sbjct: 61  RKLSQREQAIITRQL-------ASLLVAGLPLDESLSVLSEQAEREYVRELMASIRAEVV 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S + ++++  R     +       +    +  G L   LA L+  +     +K K+ 
Sbjct: 114 GGHSFANALTQHPR-----DFPDIYRALVAAGEHTGKLGVVLARLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P   NV  +      L  +    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVANVFTSTK--QQLPTLTVVMMALSGFV 221


>gi|332139659|ref|YP_004425397.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549681|gb|AEA96399.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 411

 Score = 42.8 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A+  +    S    +   + + +    G SLS ++ +  +       
Sbjct: 79  MYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSAMVKYEKV-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +  +  + V  +  G L +    L+      +  + ++Q+           +    F ++
Sbjct: 134 TRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIQSALRYPTFVLIALAIAMFILN 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             V             +      + +  +   +    + L++  
Sbjct: 194 LFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLILIVLI 237


>gi|282853085|ref|ZP_06262422.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
 gi|282582538|gb|EFB87918.1| type II secretion system F domain protein [Propionibacterium acnes
           J139]
 gi|314922728|gb|EFS86559.1| type II secretion system F domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965812|gb|EFT09911.1| type II secretion system F domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982955|gb|EFT27047.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091259|gb|EFT63235.1| type II secretion system F domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094495|gb|EFT66471.1| type II secretion system F domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315105216|gb|EFT77192.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328989|gb|EGE70749.1| membrane associated protein [Propionibacterium acnes HL103PA1]
          Length = 300

 Score = 42.8 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D   A+ + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V+A +     + W++  +P  V  LV  T P
Sbjct: 263 VEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|259907451|ref|YP_002647807.1| type IV pilin biogenesis protein [Erwinia pyrifoliae Ep1/96]
 gi|224963073|emb|CAX54556.1| Putative outer membrane protein export (MTB) system [Erwinia
           pyrifoliae Ep1/96]
 gi|283477284|emb|CAY73200.1| Type IV pilus assembly protein tapC [Erwinia pyrifoliae DSM 12163]
          Length = 399

 Score = 42.8 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +   ++    + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDIFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ      +   +I+    
Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQEKQQLLRQKVQKAL---RYPLFIMAVAL 175

Query: 138 FCVSTLVYFTSPGYMNVL 155
                ++ F  P ++ + 
Sbjct: 176 LVSIGMLVFVLPEFVAIY 193


>gi|73542645|ref|YP_297165.1| type II secretion system protein [Ralstonia eutropha JMP134]
 gi|72120058|gb|AAZ62321.1| type II secretion system protein [Ralstonia eutropha JMP134]
          Length = 424

 Score = 42.8 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  ++ +I    ++P        +      G S++ +  R  RY      
Sbjct: 94  LSTMLKAGIPLLQSIDIIARGHANPNFTQLLSDIRFDIESGSSMAAAFRRHPRY-----F 148

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG L   L  LS  +     +K+++++  +   A   +  ++   + 
Sbjct: 149 DTLYCNLIDAGEQGGILDSLLERLSLYMEKTIALKSQIKSAMIYPIAVLTVAFAVTVILM 208

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V     G  +    +     L+ +A +   +    +
Sbjct: 209 LFVIPAFKGVFSSFGANLPAPTLVVIAISDFFVAYWYI 246


>gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 324

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 5/174 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ I  +      + P AL  +     +G    D +  +  ++   +  EF +V+    
Sbjct: 132 LQNQISNKKMDIERNLPYALAFMSILASSGTTPLDILKSVANENYGHISREFSKVLFRVE 191

Query: 61  -LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
            LG     +++ +V   P          IS     GG LS  L   S+ L + +    K 
Sbjct: 192 ILGEDAVTAMNALVSNTPSDPFRDICIDISNLIYGGGGLSGYLNAKSKELMNIRRQTDKE 251

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM----NVLINDPRGHMLLGVAA 169
              S+      ++ G +      ++     G +      L  D    +L+ VA 
Sbjct: 252 FVESLGVFGEGYLGGVIMVLTLAILGIVITGALGIQIGPLKTDEMFFVLIYVAV 305


>gi|225848333|ref|YP_002728496.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644500|gb|ACN99550.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESIS 70
           F       ++       AG+ ++ A+ ++  Q  +P   E   +V +    G+SLS++++
Sbjct: 75  FTRQLGAMIN-------AGIGITQALEILAQQMPNPTLQEAINKVRDDVVTGMSLSKTMA 127

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +     P     F   ++    + G  L E L   +        +K K+++ S    A  
Sbjct: 128 KHPNVFP----PFLVNLVDAAEESG-KLDETLKRATVYYEKLAAIKGKIKSASWYPTAVL 182

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I   +   + T V  T     + +
Sbjct: 183 VIATLIVLGLLTFVVPTFAEIYSSM 207


>gi|313835132|gb|EFS72846.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929110|gb|EFS92941.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970945|gb|EFT15043.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328905820|gb|EGG25596.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 300

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78
           +D++  +  A      A+      S  PV +  R  +E   L   S    +  +   + L
Sbjct: 164 VDLVTLARLANQSAPRALVEAAQISDHPVLARIRTTLERSRLEQQSPWAGLDGLSEELGL 223

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E++    V+ +  Q G +L+ AL      +RD    + KV+A +     + W++  +P 
Sbjct: 224 PELAELVEVLRLDDQ-GASLAGALRARVNEMRDAHLNREKVEAQTTSESLTIWMV--IPV 280

Query: 139 CVSTLVYFTSP 149
            V  LV  T P
Sbjct: 281 LVLGLVLITPP 291


>gi|300697013|ref|YP_003747674.1| type II secretion system protein F (gspF) [Ralstonia solanacearum
           CFBP2957]
 gi|299073737|emb|CBJ53258.1| putative type II secretion system protein F (gspF) [Ralstonia
           solanacearum CFBP2957]
          Length = 399

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL 
Sbjct: 55  LKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 112

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++ ++    P          I    + G  + +AL   ++  + ++ ++ KV     
Sbjct: 113 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 164

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 165 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 216


>gi|293408196|ref|ZP_06652036.1| hypothetical protein ECEG_03130 [Escherichia coli B354]
 gi|291472447|gb|EFF14929.1| hypothetical protein ECEG_03130 [Escherichia coli B354]
          Length = 400

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                  G +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233

Query: 178 VMRL 181
           +MR 
Sbjct: 234 LMRR 237


>gi|222447018|pdb|3C1Q|A Chain A, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
 gi|222447019|pdb|3C1Q|B Chain B, The Three-Dimensional Structure Of The Cytoplasmic Domains
           Of Epsf From The Type 2 Secretion System Of Vibrio
           Cholerae
          Length = 123

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 21  LATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFD---- 76

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             F + ++   +  G+L   L  L+    +R+  ++K+Q  S
Sbjct: 77  ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKLQQAS 117


>gi|229514051|ref|ZP_04403513.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21]
 gi|254291779|ref|ZP_04962564.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226]
 gi|150422291|gb|EDN14253.1| type IV pilin biogenesis protein PilC [Vibrio cholerae AM-19226]
 gi|229349232|gb|EEO14189.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TMA 21]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|153802801|ref|ZP_01957387.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3]
 gi|124121666|gb|EAY40409.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-3]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|153214072|ref|ZP_01949206.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587]
 gi|153830647|ref|ZP_01983314.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39]
 gi|229527031|ref|ZP_04416426.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)]
 gi|124115498|gb|EAY34318.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 1587]
 gi|148873856|gb|EDL71991.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 623-39]
 gi|229335428|gb|EEO00910.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae 12129(1)]
          Length = 408

 Score = 42.8 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 403

 Score = 42.8 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 16/148 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSE 67
            A F   F   +D       AG+ +  A+ ++  Q+ +P +R   R V E    G+SLS 
Sbjct: 67  LALFCRQFATMID-------AGVSLVRALDILGDQTGNPKLREAIRSVQEHVEGGVSLSN 119

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++       P      F +++    + GG L E L  ++        MK ++   +    
Sbjct: 120 ALEEEDHVFP----RLFISMVE-AGETGGILDEVLLEMADHFEKENEMKQQI---TSALA 171

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             A I       V  LV    P ++++ 
Sbjct: 172 YPAVITLVAVGVVVFLVTVILPTFVDIF 199


>gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424]
 gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424]
          Length = 404

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++  K  A F   F          + AG+ +   + V+  QS +  ++     +    
Sbjct: 58  LSNITVKDKAVFSRQF-------SVMINAGVAIVRCLGVLSDQSGNKKLKKALASISADV 110

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS+++ +                +    + GG L E L  L+++L D   ++ ++
Sbjct: 111 QQGSPLSDAMGKHPDC-----FDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQI 165

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++      A   +   + F ++  +          L
Sbjct: 166 KSAMAYPVAVGMLAVIVFFAMTIFLIPVFAKIFQDL 201


>gi|70730126|ref|YP_259865.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5]
 gi|68344425|gb|AAY92031.1| general secretion pathway protein F [Pseudomonas fluorescens Pf-5]
          Length = 403

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  V Q+    +      V      G+ L+E+++   R   
Sbjct: 69  ATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLAEALA--ARPRD 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E+      +    +  G+L++ +  L+  + +R  ++ K+    +       +   + 
Sbjct: 127 FPEIY---RALIAAGEESGDLAQVMERLADYIEERNGLRGKILTAFIYPGVVGLVSIGIV 183

Query: 138 FCVSTLV 144
             + + V
Sbjct: 184 IFLLSYV 190


>gi|254226637|ref|ZP_04920217.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51]
 gi|297581049|ref|ZP_06942974.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385]
 gi|125620856|gb|EAZ49210.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V51]
 gi|297534875|gb|EFH73711.1| type IV pilin biogenesis protein PilC [Vibrio cholerae RC385]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|15642422|ref|NP_232055.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587632|ref|ZP_01677396.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80]
 gi|121729936|ref|ZP_01682358.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52]
 gi|147673666|ref|YP_001217925.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|153818412|ref|ZP_01971079.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457]
 gi|153827241|ref|ZP_01979908.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2]
 gi|227082546|ref|YP_002811097.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2]
 gi|229507515|ref|ZP_04397020.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286]
 gi|229512289|ref|ZP_04401768.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33]
 gi|229519425|ref|ZP_04408868.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9]
 gi|229607021|ref|YP_002877669.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236]
 gi|254849548|ref|ZP_05238898.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10]
 gi|255746904|ref|ZP_05420849.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101]
 gi|262161553|ref|ZP_06030663.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1]
 gi|262168404|ref|ZP_06036101.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27]
 gi|262190164|ref|ZP_06048446.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93]
 gi|298500217|ref|ZP_07010022.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757]
 gi|20178038|sp|Q9X4G9|PILC_VIBCH RecName: Full=Type IV pilin assembly protein pilC; AltName:
           Full=Type IV-A pilus assembly protein pilC
 gi|4455003|gb|AAD21031.1| type IV-A pilus assembly protein PilC [Vibrio cholerae]
 gi|9657000|gb|AAF95568.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548142|gb|EAX58215.1| type IV pilin biogenesis protein PilC [Vibrio cholerae 2740-80]
 gi|121628324|gb|EAX60831.1| type IV pilin biogenesis protein PilC [Vibrio cholerae V52]
 gi|126511045|gb|EAZ73639.1| type IV pilin biogenesis protein PilC [Vibrio cholerae NCTC 8457]
 gi|146315549|gb|ABQ20088.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|149738855|gb|EDM53191.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MZO-2]
 gi|227010434|gb|ACP06646.1| type IV pilin biogenesis protein PilC [Vibrio cholerae M66-2]
 gi|227014317|gb|ACP10527.1| type IV pilin biogenesis protein PilC [Vibrio cholerae O395]
 gi|229344114|gb|EEO09089.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC9]
 gi|229352254|gb|EEO17195.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae B33]
 gi|229355020|gb|EEO19941.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae BX 330286]
 gi|229369676|gb|ACQ60099.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae MJ-1236]
 gi|254845253|gb|EET23667.1| type IV pilin assembly protein pilC [Vibrio cholerae MO10]
 gi|255735306|gb|EET90706.1| type 4 fimbrial assembly protein PilC [Vibrio cholera CIRS 101]
 gi|262023296|gb|EEY42000.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae RC27]
 gi|262028864|gb|EEY47518.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae INDRE 91/1]
 gi|262033955|gb|EEY52413.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae CT 5369-93]
 gi|297540910|gb|EFH76964.1| type IV pilin biogenesis protein PilC [Vibrio cholerae MAK 757]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|301026087|ref|ZP_07189562.1| type II secretion system F domain protein [Escherichia coli MS
           69-1]
 gi|300395658|gb|EFJ79196.1| type II secretion system F domain protein [Escherichia coli MS
           69-1]
          Length = 400

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                  G +L+       +   +
Sbjct: 174 IIVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233

Query: 178 VMRL 181
           ++R 
Sbjct: 234 LIRR 237


>gi|326318665|ref|YP_004236337.1| general secretion pathway protein F [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375501|gb|ADX47770.1| general secretion pathway protein F [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 411

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  +S D  +      +    + G + + +++   R     E 
Sbjct: 81  LAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR-----EF 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L +R+ +KAK+   S+       I   +   + 
Sbjct: 136 SSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAIVIVLFLV 195

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             V    P    V     R    L VA 
Sbjct: 196 GYVV---PQVAAVFAGSKRALPFLTVAM 220


>gi|120612613|ref|YP_972291.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1]
 gi|120591077|gb|ABM34517.1| general secretion pathway protein F [Acidovorax citrulli AAC00-1]
          Length = 411

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V +GLP+  A+  +  +S D  +      +    + G + + +++   R     E 
Sbjct: 81  LAGLVSSGLPLERALTALADESDDDRQRHLVATLRAEVNAGSTFARALTAHPR-----EF 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G+L   L  L+  L +R+ +KAK+   S+       I   +   + 
Sbjct: 136 SSIYCAVIGAGESSGHLGLVLERLADDLEERQALKAKLIGASLYPAIVTVIAIVIVLFLV 195

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAA 169
             V    P    V     R    L VA 
Sbjct: 196 GYVV---PQVAAVFAGSKRALPFLTVAM 220


>gi|19705384|ref|NP_602879.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713371|gb|AAL94178.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 346

 Score = 42.4 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   +++ +    G S+ ES     +      +
Sbjct: 15  LSIMLKSGLTFTTAIEIILREEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       II      V+
Sbjct: 75  YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVIISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|330890704|gb|EGH23365.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 406

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P + +V    N       L V A   ++    +
Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226


>gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 402

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 1   MKHLIKKRTAKFLDDFP------------NALDIIVRSVRAGLPVSDAVAVIVGQSSDP- 47
           ++   K+   KF    P               + +   ++AG+P+ DA+        +  
Sbjct: 239 LEKRKKREFDKFKLRLPVFGKLFLYIELNRFFETLSSLLKAGIPIVDAMISATHTVKNEY 298

Query: 48  VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
           ++     +      G SL+   S+      ++E+   +  +    +  G L+E L+ +S+
Sbjct: 299 LKERLLLINNELKKGKSLATLFSK-----EIKELPTVALQLIKAGEQSGRLAELLSKVSK 353

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            LR+    + ++   ++ +     I+  +   V  +V+
Sbjct: 354 FLRN----EVEIYTKNLTSMLEPAIMIIIGLIVGFIVF 387



 Score = 41.6 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISR 71
           + +       +   + AG+P+ +A+  +     +  +  F  +++     G SLSES+  
Sbjct: 63  VQELAVFFRTLATLLDAGIPLIEAIESLSENFKEDRKKIFMTKIVNNLREGKSLSESLKI 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P               + GG L ++L  ++ IL  R+ +K+ +    +       
Sbjct: 123 AGIKDP------VIVSFVSSGEKGGTLVQSLEIIASILEKREELKSTIINALIYPVV--L 174

Query: 132 IIGSLPFCVSTLVYFT 147
           ++ ++   V  ++   
Sbjct: 175 LVVAIGVVVFMMLSVI 190


>gi|148651967|ref|YP_001279060.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
 gi|148571051|gb|ABQ93110.1| type II secretion system protein [Psychrobacter sp. PRwf-1]
          Length = 410

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 7/151 (4%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64
           +R  K    D    +  +    +AG+P+  A  +I      P ++    RV +    G+S
Sbjct: 62  RRQKKITALDISLFVRQLATMTKAGVPIVQAFELIAQALDKPSMKQLVLRVKQQLETGMS 121

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L +S+         ++       +   ++  G L   L  ++    + + +K K++    
Sbjct: 122 LEDSL-----RAHPKQFDDLFCALVSAAEHSGTLDTLLERIADYKENNELLKIKLKKAIK 176

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              A   +   +   +   V        + +
Sbjct: 177 YPLAVMLVAMIVSIILLLKVVPVFADLYDSM 207


>gi|283782634|ref|YP_003373388.1| hypothetical protein HMPREF0424_0121 [Gardnerella vaginalis 409-05]
 gi|283441234|gb|ADB13700.1| conserved domain protein [Gardnerella vaginalis 409-05]
          Length = 191

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           + + LG  ++E +   +     +K  +     ++   KA+  ++ +LP            
Sbjct: 84  LSNTLGCVMAECVEATAASYHAQKRAEDLRADVAAMPKATIKLLTALPILALFAGELLGG 143

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + +LI    G +LL +      +G+  +  M+  
Sbjct: 144 HPILMLITTVNGWILLTIGGICYGLGLAWVSSMLQI 179


>gi|167625754|ref|YP_001676048.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167355776|gb|ABZ78389.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 406

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     +      G  LS ++++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQHPDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F +++ V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLIAIAIAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
 gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
          Length = 398

 Score = 42.4 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F          + AGLP+  A+ ++  QS +  + +  R+V+     G ++++++ 
Sbjct: 64  FTRQF-------STMINAGLPLVQALDILAKQSENKALSAVVRQVVFDVESGNTVADAMR 116

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +       S   T +    + GG L   L  L+  +     +  KV+          
Sbjct: 117 KHPK-----AFSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKG---AMIYPT 168

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I+     CV  L++   P + N+ 
Sbjct: 169 VIMCVAGLCVVILLWKVIPVFANMF 193


>gi|296118088|ref|ZP_06836670.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968974|gb|EFG82217.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 264

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 12/190 (6%)

Query: 1   MKHLIKKRTA-KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +  +  KR   +  D     L  +   +RAG     A+     + +              
Sbjct: 75  LTQMHDKRVNLRAEDAIAQLLGTMTADLRAGATFPAALKRGADELAVSATVSMDIKAAIA 134

Query: 60  HL------GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                   G S+S  +S         +++    + S+  + G  LS         +  RK
Sbjct: 135 TAAVIAHRGGSISTVLS-----TSHPQLTNLGALCSLNEKHGIPLSNVFEQAHNQIESRK 189

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             +A  +A     +A+A ++  LP     +           L     G +LL V  A   
Sbjct: 190 RHRAATKASLQGPQATAIVLTLLPLAGIFMGTIMGANPAGFLFGGGLGGLLLVVGVALAC 249

Query: 174 IGIMVMRLMI 183
            G +  R++I
Sbjct: 250 AGFIWSRMLI 259


>gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
 gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
          Length = 413

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 69/192 (35%), Gaps = 18/192 (9%)

Query: 1   MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           +K   K+R  +     F              ++AGLP+  A  ++    S+P  +E   +
Sbjct: 62  VKATKKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +      +    ++ +     P +    F   +    + GG L   L  L+      + +
Sbjct: 112 LMQVRADVEQGSALGKSFAKYP-KYFDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQAI 170

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG--HMLLGVAAAFML 173
           K KV+       +   +  +L F +   V          +  +  G   +++ ++  F+ 
Sbjct: 171 KKKVKTALTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMGAELPGLTKIVMDISKIFVE 230

Query: 174 IGIMVMRLMINF 185
            G +++ ++I  
Sbjct: 231 YGWLMIVIVIAI 242


>gi|134298674|ref|YP_001112170.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
 gi|134051374|gb|ABO49345.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
          Length = 290

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 1/140 (0%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            +K   K   +  N +  +   V  GL     +     +    + S  R  ++   LG  
Sbjct: 135 AQKARDKINTELINLIYSMDLGVSNGLD-EKLLIQWAAEGKGLLASMLRESLKEVDLGGE 193

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                 R+     + +      +I    + G ++S++L +L+R  R R++         +
Sbjct: 194 EYLIFYRLAEDYNVPDAEEVGMLIKHAEKNGVDISQSLYDLARDFRYRRDSDLDKNIGKV 253

Query: 125 EAKASAWIIGSLPFCVSTLV 144
           +     +++ +       L+
Sbjct: 254 KLTIGVYVVLAYMVMTFALI 273


>gi|90416350|ref|ZP_01224282.1| pilin secretion/fimbrial assembly system protein, PilC [marine
           gamma proteobacterium HTCC2207]
 gi|90332075|gb|EAS47289.1| pilin secretion/fimbrial assembly system protein, PilC [marine
           gamma proteobacterium HTCC2207]
          Length = 404

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +P       ++ +    G S   ++ R  RY      
Sbjct: 74  LATMMKAGVPLVQSFDIVADGFDNPTMQALIHQIRDDVAAGGSFPNALRRSPRYFD---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++    +  G L   L  ++      + +KAK++       A   +   +   + 
Sbjct: 130 DLFCSLVD-SGETAGALETMLDRVATYKEKTEQLKAKIKKALTYPIAVLVVAMVVTAILL 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V        +    D     L  +  + M+    ++
Sbjct: 189 IKVVPVFAETFSSFGADLPAFTLFVLGLSEMMQEYWLI 226


>gi|315107453|gb|EFT79429.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 300

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPL 78
           +D++  +  A      A+      S  PV +  R  +E   L   S    +  +   + L
Sbjct: 164 VDLVTLARLANQSAPRALVEAAQMSDHPVLARIRMTLERSRLEQQSPWAGLDELSDELDL 223

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E++    V+ +  Q G +L+ AL      +RD    + KV+A +     + W++  +P 
Sbjct: 224 PELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMV--IPV 280

Query: 139 CVSTLVYFTSP 149
            V  LV  T P
Sbjct: 281 LVLGLVLITPP 291


>gi|89075292|ref|ZP_01161719.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34]
 gi|89048973|gb|EAR54541.1| putative MSHA biogenesis protein MshG [Photobacterium sp. SKA34]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 12  FLDDFP-NALDIIVRSV----RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           F    P   L I  R +    +AG+P+  A   +   +S P+    +  +E   L L+  
Sbjct: 60  FQAQLPLEVLVIFCRQLYSLTKAGVPLLRAFKGLSQSASHPL---LKTTLEALTLDLTNG 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++S  ++  P      F ++I V  +  G L + L  L+       N + +++      
Sbjct: 117 RALSVAMQQHPRVFSRLFISLIHV-GENTGRLDQVLLQLANYYEQEVNTRRQIK---SAM 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +++ ++   +  L     P + ++ 
Sbjct: 173 RYPTFVLTAIVIAMGILNTKVIPQFASMF 201


>gi|182412504|ref|YP_001817570.1| type II secretion system protein [Opitutus terrae PB90-1]
 gi|177839718|gb|ACB73970.1| type II secretion system protein [Opitutus terrae PB90-1]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
             +   + AGLP+   +  +  Q+ DP    FR +I      +S   S S  V+  P   
Sbjct: 72  QQLASLLIAGLPLVQCLEALQDQTEDP---CFRIIIRDVRADISSGNSFSSSVKKFPNAF 128

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S F +++    +  G L+E L  ++        +  KV+           +IG     V
Sbjct: 129 NSLFVSMVE-AGEASGGLAEILGKVASYFESTVRLTKKVK---SAMTYPIAVIGLAVALV 184

Query: 141 STLVYFTSPGYMNVL 155
           + L+ F  P + ++ 
Sbjct: 185 NVLLIFVIPVFASMF 199


>gi|217971718|ref|YP_002356469.1| type II secretion system protein [Shewanella baltica OS223]
 gi|217496853|gb|ACK45046.1| type II secretion system protein [Shewanella baltica OS223]
          Length = 406

 Score = 42.4 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS S+++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ S+   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLISIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|291286430|ref|YP_003503246.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883590|gb|ADD67290.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 397

 Score = 42.4 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
              P+    +   + +G+P++ A+ V      D  ++     + E    G   S+++   
Sbjct: 61  KALPDIFFQLSILISSGIPLTRALKVTADTVKDTKMKRSLLDMEEKVSSGKRFSDAMKPY 120

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +         +  +I    ++G  LS  L ++SR   +R+    K+   +      + +
Sbjct: 121 EKIY----TELYIHLIRTSEKVG-RLSSVLLDISRFEEERRKTGEKI---TSAMMYPSVV 172

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +      V  ++ F  P   ++ 
Sbjct: 173 MMLGLGVVGFMLTFVVPKLESIF 195


>gi|328474168|gb|EGF44973.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus
           10329]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    V      G  +S+++            
Sbjct: 76  ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNL+E    L+      + ++AKV          A I  ++   V+
Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182

Query: 142 TLVYFT 147
             V F 
Sbjct: 183 LGVSFI 188


>gi|229521254|ref|ZP_04410674.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80]
 gi|229341786|gb|EEO06788.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae TM 11079-80]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|260774761|ref|ZP_05883664.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609323|gb|EEX35475.1| general secretion pathway protein F [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 76  LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHIFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++S   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 132 DLFRSMVS-AGEKSGHLDAVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 186

Query: 142 TLVY 145
             + 
Sbjct: 187 AFLL 190


>gi|319761504|ref|YP_004125441.1| general secretion pathway protein f [Alicycliphilus denitrificans
           BC]
 gi|330823373|ref|YP_004386676.1| general secretion pathway protein F [Alicycliphilus denitrificans
           K601]
 gi|317116065|gb|ADU98553.1| general secretion pathway protein F [Alicycliphilus denitrificans
           BC]
 gi|329308745|gb|AEB83160.1| general secretion pathway protein F [Alicycliphilus denitrificans
           K601]
          Length = 409

 Score = 42.4 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGLP+  A+  +  ++ D  +      +    + G + + ++++  R     E 
Sbjct: 79  LAGLVGAGLPLERALTALADEADDERQRHLVAALRAEVNAGSTFARALAQHPR-----EF 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L + L +L+  L  R+ ++AK+      A   A +       V 
Sbjct: 134 SDIYCAVIGAGEGSGGLGQVLESLADDLEARQQLRAKLIG---AALYPAIVTLVAIVIVL 190

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P   +V     R   LL V   
Sbjct: 191 FLVGYVVPQVASVFAGSKRALPLLTVLML 219


>gi|152999038|ref|YP_001364719.1| type II secretion system protein [Shewanella baltica OS185]
 gi|160873631|ref|YP_001552947.1| type II secretion system protein [Shewanella baltica OS195]
 gi|304411543|ref|ZP_07393156.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|307306681|ref|ZP_07586423.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
 gi|151363656|gb|ABS06656.1| type II secretion system protein [Shewanella baltica OS185]
 gi|160859153|gb|ABX47687.1| type II secretion system protein [Shewanella baltica OS195]
 gi|304350070|gb|EFM14475.1| Type II secretion system F domain protein [Shewanella baltica
           OS183]
 gi|306910649|gb|EFN41078.1| Type II secretion system F domain protein [Shewanella baltica
           BA175]
 gi|315265860|gb|ADT92713.1| Type II secretion system F domain [Shewanella baltica OS678]
          Length = 406

 Score = 42.4 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   +    ++     + E    G  LS S+++          
Sbjct: 73  MYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDS--- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++ V  +  G L +A   LS  +   +  + +++      +   +++ S+   + 
Sbjct: 130 -LFVSMVHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---SAMRYPMFVLISIALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 185 ILNIMVIPKFAEMF 198


>gi|207724220|ref|YP_002254617.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
 gi|206589433|emb|CAQ36394.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
          Length = 399

 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K R  K           +   +RAGL VS+A+  +  +   P    +RR+ +    GL 
Sbjct: 55  LKSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVDVYRRLYDGLLSGLP 112

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++ ++    P          I    + G  + +AL   ++  + ++ ++ KV     
Sbjct: 113 LSEAMKQVEGIFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV---VS 164

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 165 AAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 216


>gi|149177766|ref|ZP_01856366.1| probable type IV pilus assembly protein TapC [Planctomyces maris
           DSM 8797]
 gi|148843416|gb|EDL57779.1| probable type IV pilus assembly protein TapC [Planctomyces maris
           DSM 8797]
          Length = 370

 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75
           P+ L  +  +  +G P+  A   +   + +P + + F  ++E  H G     S+      
Sbjct: 237 PDVLRFLHITTESGRPLLGAFETLSHTTKNPYLSARFNAILEDVHKGNDCWTSLHDYSLL 296

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
            P +        +   +Q  GNLS AL  +++ +  R N +  +    +E      +   
Sbjct: 297 TPSE------VRLLQSAQRAGNLSWALKAIAKGIERRINYRLALIREYLEPAFILSVGCL 350

Query: 136 LPFCVSTLVY 145
           +   V  L  
Sbjct: 351 VGIFVIGLFL 360


>gi|92114297|ref|YP_574225.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91797387|gb|ABE59526.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 410

 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG+P+  A +V+      P        ++     G S SE++++  ++      
Sbjct: 80  MATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALAQHPQHFD---- 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G+L   L  ++       +++A+V+        +A ++  +     
Sbjct: 136 RMFVNMVE-AGEQSGSLDRMLERVASYKEKIDSLRARVRKALYYP--AAVVLVGMGVTAL 192

Query: 142 TLVYFT 147
            LV   
Sbjct: 193 LLVKVV 198


>gi|299065626|emb|CBJ36798.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 421

 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 5/169 (2%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K     R  K +  D       +   ++AG+P+  +V +I    ++P    F +++    
Sbjct: 69  KRRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANP---NFTQLLTEIR 125

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + +    S+++  R  P Q        +    + GG L   L  LS  +     +KA+++
Sbjct: 126 VDIESGSSMAQAFRRHP-QHFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           +  +   +   +   +   +   V     G             L+ +  
Sbjct: 185 SAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGI 233


>gi|17229934|ref|NP_486482.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
 gi|17131534|dbj|BAB74141.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+ +   + V+  Q ++  ++     +      G++LS+++            
Sbjct: 76  LATLVNAGVAIVRGLGVLGDQCTNAKLKQALNDISNDVQSGVNLSDAM-----RKHPGCF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++GG L E L  L+++L D   ++ ++++          +   +   ++
Sbjct: 131 DGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSALAYPVVVGILATGIFVGMT 190

Query: 142 TLVYFTSPGYMNVL 155
             +          L
Sbjct: 191 VFLIPIFAKIFVEL 204


>gi|229524410|ref|ZP_04413815.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis
           VL426]
 gi|229337991|gb|EEO03008.1| type 4 fimbrial assembly protein PilC [Vibrio cholerae bv. albensis
           VL426]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|239996354|ref|ZP_04716878.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Alteromonas macleodii ATCC 27126]
          Length = 411

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A+  +    S    +   + + +    G SLS S+++  +       
Sbjct: 79  MYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGRSLSSSMAKYEKV-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +  +  + V  +  G L +    L+      +  + ++++           +    F ++
Sbjct: 134 TRLTISVVVVGENTGKLDDVFLQLALYFEREQETRKRIKSALRYPTFVLIALAIAMFILN 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
             V             +      + +  +   +    + +++
Sbjct: 194 LFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIIV 235


>gi|160896747|ref|YP_001562329.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160362331|gb|ABX33944.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 405

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V+V  S    +++  + V+++   G+ LS+++ +          
Sbjct: 75  LAIMMRAGLSLDNALKVLVEMSHKVQMQAMLQSVLDSVKAGMPLSQALGKHHDLFG---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+  ++    +  G +S  L  L   +  ++ ++  V + ++     A ++G     + 
Sbjct: 131 DFYINMVR-SGEASGQMSGVLNRLVEHMARQRALRDSVVSATI---YPAILLGVAVLSLV 186

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  P     L ND
Sbjct: 187 AMLGFVVPQ-FEQLFND 202


>gi|310823682|ref|YP_003956040.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
 gi|309396754|gb|ADO74213.1| Type IV pilin [Stigmatella aurantiaca DW4/3-1]
          Length = 413

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSE 67
           F   F   +D       AGLP+   + ++  Q  +P    F++V+         G + ++
Sbjct: 79  FTRQFATMID-------AGLPLVQCLDILGSQMENPA---FKKVVFAIKGKVEQGSTFAD 128

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +         F   +    ++GG L   L  L+      + +K KV+  S    
Sbjct: 129 ALKDHPKVFD----ELFVQ-LCAAGEVGGILDTILNRLAAYREKAEKLKGKVK--SAMTY 181

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            S  I  ++      L+  T
Sbjct: 182 PSVVICVAIGVTALLLLKVT 201


>gi|262166465|ref|ZP_06034202.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223]
 gi|262026181|gb|EEY44849.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus VM223]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|124027108|ref|YP_001012428.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456]
 gi|123977802|gb|ABM80083.1| hypothetical protein Hbut_0211 [Hyperthermus butylicus DSM 5456]
          Length = 297

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
              F +     L I+   + A    +DA+         P  S   R+         L  +
Sbjct: 86  LRMFEEQLIEFLLILPGMLAASPSTADALLRTARMLRPPFNSYVERMARIYASTGDLERA 145

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            +      P + V   +  +   ++ GG++   L+ ++      + +         EA+ 
Sbjct: 146 FNEAFTAAPSK-VRILARSVVTAAKTGGHIHIVLSKVAAYADASRRL-----VGLAEARL 199

Query: 129 SAWIIGS 135
           S + + +
Sbjct: 200 SEYKMIA 206


>gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114]
 gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114]
          Length = 413

 Score = 42.4 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R  +  +D       +   ++AGLP+  A  ++    S+P  +E   ++    
Sbjct: 62  VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    ++ +     P +    F   +    + GG L   L  L+      + +K KV+
Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                  A   +  +L F +   V          +
Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANM 210


>gi|85712757|ref|ZP_01043801.1| Type II secretory pathway [Idiomarina baltica OS145]
 gi|85693397|gb|EAQ31351.1| Type II secretory pathway [Idiomarina baltica OS145]
          Length = 417

 Score = 42.4 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           LD        +     AG+P+  A+  +   + +  +    R V      G +LS  +++
Sbjct: 74  LDQLIIFCRQMYSLTNAGIPILRAIEGLADTTQNKRLERALRDVHSQLERGRTLSAGMAQ 133

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +       S     I    +  G L E+   L+  L   ++ + +++      +   +
Sbjct: 134 HPKV-----FSRLIVAIVHVGENTGQLEESFEQLALYLEKEQDTRKRIK---AATRYPTF 185

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           ++ +L   +  L  F  P + N+ 
Sbjct: 186 VMIALVVALFVLNIFVIPTFANMF 209


>gi|228969172|ref|ZP_04130068.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790518|gb|EEM38223.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 225

 Score = 42.4 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 1/116 (0%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           M    KKR   +  +     L+ +  ++ A    S A+  I+     P++ +    +   
Sbjct: 110 MMFYKKKRYELYVEEQLMLYLNSLANAMSAYENPSFAIKSILPLMQSPIKEDVENCLIVH 169

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
             G S+ ES + ++     + +  F  ++ + S+ G +    L  ++   + +K++
Sbjct: 170 LEGTSIKESFAPLINKYKYKNLKLFHDMLDLISKTGKDEDGLLMRIADEFQQKKDI 225


>gi|15606135|ref|NP_213512.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5]
 gi|2983312|gb|AAC06902.1| fimbrial assembly protein PilC [Aquifex aeolicus VF5]
          Length = 408

 Score = 42.4 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+ + +A+ ++  Q  +  +R       +    G S+ +++++     P    
Sbjct: 76  LSVLVGAGVSIVEAIELVAEQMQNKKLRKALMETAKDIEEGSSIHDALAKRKNIFP---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F   ++ V  + G  L   L   +        +K K+++ S           ++ + + 
Sbjct: 132 EFLINLVEVGEETG-ELDLVLRRAAEYYEKIAFIKGKIKSASFYPTFVMIFATAIVWFIL 190

Query: 142 TLVYFTSPGYMNVL 155
           T V          L
Sbjct: 191 TFVVPKFAEIYKSL 204


>gi|28899299|ref|NP_798904.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363755|ref|ZP_05776530.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030]
 gi|260879009|ref|ZP_05891364.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AN-5034]
 gi|260896384|ref|ZP_05904880.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           Peru-466]
 gi|260900209|ref|ZP_05908604.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ4037]
 gi|28807523|dbj|BAC60788.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089112|gb|EFO38807.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           Peru-466]
 gi|308089566|gb|EFO39261.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AN-5034]
 gi|308110214|gb|EFO47754.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ4037]
 gi|308111151|gb|EFO48691.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus K5030]
          Length = 407

 Score = 42.4 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    V      G  +S+++            
Sbjct: 76  ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNL+E    L+      + ++AKV          A I  ++   V+
Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182

Query: 142 TLVYFT 147
             V F 
Sbjct: 183 LGVSFI 188


>gi|238062253|ref|ZP_04606962.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149]
 gi|237884064|gb|EEP72892.1| hypothetical protein MCAG_03219 [Micromonospora sp. ATCC 39149]
          Length = 312

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 12/165 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS-LSESISRMVRYMP 77
           ALDI      AG  V+     + G+          R       G S   + + ++ R   
Sbjct: 150 ALDIGRSGASAGPDVASTAPGLPGEDPPRSARGIGRQPVGLAAGASDAPDRLRQLAR--- 206

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  + G  L+E L  +    R      A   A +  A+A+AW++ +LP
Sbjct: 207 --------AAVRLADRTGAPLAELLERIEADARAADRGLAAAAAQAAGARATAWLLAALP 258

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                L Y      + VL++ P G      A     +G++    +
Sbjct: 259 LGGIGLGYGVGVDPVAVLLHTPVGGGCAVAAVVLQFVGLLWTERL 303


>gi|218687980|ref|YP_002396192.1| type IV pilin biogenesis protein [Escherichia coli ED1a]
 gi|218425544|emb|CAR06327.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli ED1a]
          Length = 400

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +  +  +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLIDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 406

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS---RMVR 74
             + I   V +GL +  A+ V+  Q  + P     R ++     G  LS+++     M R
Sbjct: 71  FCEQIGTMVGSGLNIEQALQVVSRQKGNRPSARMARHLLPRIQAGGPLSDALDIEVGMPR 130

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           Y+P          +   ++ GG L+E L    R L+ + + +A++            ++ 
Sbjct: 131 YLPS---------MIRAAESGGRLAEGLETAGRYLQRQASTRAEIANALT---YPVIVLV 178

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDP-------------------RGHMLLGVAAAFMLIG 175
           ++   +  ++    PG+  +   +                         L    A + IG
Sbjct: 179 TVMIALLIVLTVVIPGFEPIFAGEEHRLPGMTRFVLWLSDLAVNHAITSLLWMGAILAIG 238

Query: 176 IMVMRLMINF 185
            ++ R  + F
Sbjct: 239 FLLYRRSVRF 248


>gi|17547545|ref|NP_520947.1| fimbrial assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17429849|emb|CAD16533.1| probable fimbrial assembly transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 421

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 10/181 (5%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           K     R  K +  D       +   ++AG+P+  +V +I    ++P    F +++    
Sbjct: 69  KRRRAARGKKIVPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANP---NFTQLLTEIR 125

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           + +    S+++  R  P Q        +    + GG L   L  LS  +     +KA+++
Sbjct: 126 VDIESGSSMAQAFRRHP-QHFDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQIK 184

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
                      ++         L+ F  P + NV  +   G  L       M I    ++
Sbjct: 185 ---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFAS--FGATLPAPTLVVMGISDFFVK 239

Query: 181 L 181
            
Sbjct: 240 W 240


>gi|327484917|gb|AEA79324.1| Type IV fimbrial assembly protein PilC [Vibrio cholerae LMA3894-4]
          Length = 408

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILTQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|296328361|ref|ZP_06870888.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154540|gb|EFG95330.1| general secretion pathway protein F [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 346

 Score = 42.0 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  +   +   +++ +    G S+ ES     +      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILREEKEKNFKEVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 204

 Score = 42.0 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++   + AG  +  A+ ++ G +SD      R V+    +G     +       +P 
Sbjct: 69  MLELVAAMLDAGSSIGRALELVSGSASDRYCRALRPVVSALAIGADWETAWRSSAVRLP- 127

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLP 137
            EV      +   +  G   S  L   +  LR  +   A+ +A S+  K    + + SLP
Sbjct: 128 -EVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLCSLP 186

Query: 138 FCVSTLV 144
             +   V
Sbjct: 187 AFICLGV 193


>gi|167584996|ref|ZP_02377384.1| general secretion pathway protein F [Burkholderia ubonensis Bu]
          Length = 405

 Score = 42.0 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ +++ V+  Q+  D +R     +     
Sbjct: 61  RKLSQREQAILTRQL-------ASLLIAGLPLDESLGVLTEQAERDYIRELMAAIRAEVL 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL+ ++++  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSLANALAQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                      I   +   V+ L+ +  P  +NV  +  +   +L V    M +   V
Sbjct: 169 LAFTYPGIVTLIAFGI---VTFLLSYVVPQVVNVFASTKQQLPILTV--VMMALSDFV 221


>gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
 gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
          Length = 413

 Score = 42.0 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K   K+R  +  +D       +   ++AGLP+  A  ++    S+P  +E   ++    
Sbjct: 62  VKTARKRRITQ--EDITVFTRQLATMMKAGLPLMQAFEIVARGHSNPSMTE---MLMQVR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
             +    ++ +     P +    F   +    + GG L   L  L+      + +K KV+
Sbjct: 117 SDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAIKKKVK 175

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                  A   +  +L F +   V          +
Sbjct: 176 TALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANM 210


>gi|153838722|ref|ZP_01991389.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ3810]
 gi|149747882|gb|EDM58760.1| type IV pilus assembly protein TapC [Vibrio parahaemolyticus
           AQ3810]
          Length = 407

 Score = 42.0 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    V      G  +S+++            
Sbjct: 76  ISTMLVTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASNHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNL+E    L+      + ++AKV          A I  ++   V+
Sbjct: 131 DPLYTDLIATGEQSGNLAEVFERLATYREKNEQLRAKV--------IKALIYPAMVILVA 182

Query: 142 TLVYFT 147
             V F 
Sbjct: 183 LGVSFI 188


>gi|28868145|ref|NP_790764.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851382|gb|AAO54459.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 405

 Score = 42.0 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ R   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRTLVDSLKQEVSAGNSFATALRRKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + ++  +          A   M+IG+
Sbjct: 187 ILLIKVVPQFQSIFASFGADLP----AFTLMVIGL 217


>gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 403

 Score = 42.0 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 11/146 (7%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-------VIETQHLGLSLSESI 69
           P  +  +   + +G+ + +A   I+    +  + E R         +     G++ SES 
Sbjct: 259 PEIISQLSLLIGSGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMTESESY 318

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKA 128
            R  +   +       T +S   + G   L+E L   ++   + +  +AK        K 
Sbjct: 319 ERFGKRCGISSYMKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEKAGTKL 378

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
              ++      +  LV    P ++++
Sbjct: 379 ---LLPMSMMLIVVLVIVIVPAFLSI 401


>gi|262404737|ref|ZP_06081292.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586]
 gi|262349769|gb|EEY98907.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC586]
          Length = 408

 Score = 42.0 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASAHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
           DSM 13479]
 gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
           DSM 13479]
          Length = 415

 Score = 42.0 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               +  +   + +G+P++ A+ +I V +S   ++  + ++      G+ LS+++     
Sbjct: 79  LARFMSEMAVMLNSGIPLAQALNLISVRESRKDLKEIYGKLYHMILHGMDLSQAME---- 134

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            M           +    + GG+L++A   ++         + KV          A++  
Sbjct: 135 -MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFEKEDETRKKV---GTAMIYPAFLFL 190

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
           ++   V  L     P +  + 
Sbjct: 191 TVAVVVILLFTTVLPSFFELF 211


>gi|116619189|ref|YP_821345.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222351|gb|ABJ81060.1| type II secretion system protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 402

 Score = 42.0 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 14/145 (9%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F       V  +RAGLP+  A+ ++  + +DP +    + V +    G  LS++  
Sbjct: 69  FNQQF-------VTLIRAGLPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAF- 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R+    P      + T +    +  G+L+E L       +    +K KV    M      
Sbjct: 121 RLQGIFP----KMYVTSVM-AGEKSGSLTEVLDRYVTYQKMSLAVKKKVMVSLMYPAVLI 175

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++  L   + T V  T     N +
Sbjct: 176 VLVALLMVFLVTYVVPTFANLYNSM 200


>gi|299139220|ref|ZP_07032396.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598900|gb|EFI55062.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 396

 Score = 42.0 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 12/150 (8%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAGLP+  ++ ++  +  +   +++   V      G S+S +                 
Sbjct: 72  IRAGLPILSSLDLLAKRQKEESFQAQLEDVTSRIKTGESISSAFE------AQGSFPLVY 125

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           T   +  +  GNL E L       R     + K++         A++I  +      L+ 
Sbjct: 126 TTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLK---ASLIYPAFLIVMVIGLFIFLIT 182

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           F  P +  +   D  G  L  +    + +G
Sbjct: 183 FVVPRFAQLY--DQLGTKLPALTLFMLALG 210


>gi|323494569|ref|ZP_08099673.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546]
 gi|323311172|gb|EGA64332.1| general secretion pathway protein F [Vibrio brasiliensis LMG 20546]
          Length = 408

 Score = 42.0 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 77  LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADYPHVFD---- 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
             F +++S   +  G+L   L  L+    +R+ M++K+ QAL        + +G + F +
Sbjct: 133 DLFRSMVS-AGEKSGHLDSVLERLADYAENRQKMRSKLQQALIYPVVLVVFAVGIVAFLL 191

Query: 141 STLV 144
           + +V
Sbjct: 192 AAVV 195


>gi|266619933|ref|ZP_06112868.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288868471|gb|EFD00770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 310

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 77/179 (43%), Gaps = 6/179 (3%)

Query: 9   TAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLS 66
                ++   A+ II  S +R    +  ++   +   ++PV++ F   +    L   + +
Sbjct: 126 KKHLNEELETAISIITTSYLRT-EDIIRSIQENLPYINEPVKANFEAFVYEARLINANTT 184

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +I+ +   +P +    +  ++ +Q Q   ++   L  +++   D + ++++++A+    
Sbjct: 185 SAINSLKMKIPNRVFHEWCNIL-IQCQSDRSMKNTLPTIAQKFSDVRIVQSELEAMMQGP 243

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMN-VLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
           +  A  +  L      L+YF +  + + +L   P G + L +  A +L  +  +  +  
Sbjct: 244 RREAITMMFLVIANIPLLYFLNKDWFHTLLFTTP-GKIALAICGAIILFSLTQIMKLSK 301


>gi|119486410|ref|ZP_01620468.1| type II secretion system protein [Lyngbya sp. PCC 8106]
 gi|119456312|gb|EAW37443.1| type II secretion system protein [Lyngbya sp. PCC 8106]
          Length = 376

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 29  AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           AG+ ++  ++V+  Q  +   +  +R + T    +    ++S  +R  P          +
Sbjct: 49  AGIAMARCLSVLSEQCDN---ARLKRALTTIRADVEEGNALSESMRKFP-DVFDMLFISM 104

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
               ++GG L E L  L+ ++      ++++++     K   +I  ++ F ++  +  T 
Sbjct: 105 VSAGEVGGVLDEVLERLAVMMEKNHKTESEIKSAMSYPKTVLFIALAVFFAMTIFLLPTF 164

Query: 149 PGYMN 153
            G   
Sbjct: 165 AGIFE 169


>gi|302189197|ref|ZP_07265870.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           syringae 642]
          Length = 405

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            L+    P + +V    N       L V A   ++    + ++I
Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVI 230


>gi|260220289|emb|CBA27679.1| Type IV pilus assembly protein tapC [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 405

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++   + +P V      +      G SLS +  +     PL   
Sbjct: 75  LATMMKAGVPLLQAFDIVGRGNPNPSVTKLLSDIRSDVETGTSLSAAFRK----YPLY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L + L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 DNLYCNLVEAGESAGILDQLLDRLAVYMEKTEAIKSKIKSALMYPISVLVVAFVVVSVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V  +          +     L  +A + + I    +
Sbjct: 190 IFVIPSFKQVFTSFGGELPAPTLFVIALSEVFIEYWWL 227


>gi|149177813|ref|ZP_01856412.1| general secretion pathway protein F-putative pilus protein
           [Planctomyces maris DSM 8797]
 gi|148843303|gb|EDL57667.1| general secretion pathway protein F-putative pilus protein
           [Planctomyces maris DSM 8797]
          Length = 345

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + +G+ +  +  +   +  D  ++     ++     G  ++ ++ +   Y P        
Sbjct: 22  LESGVSIVKSFQLAGKKLGDHRLQQSVNDIVMELKSGNDVTSALQKQGNYYP----ELMV 77

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            +ISV  Q GG L E L  L+    +   M+     +         +   +   +  ++ 
Sbjct: 78  NMISVAEQSGG-LPEVLKALAEHYDNLVQMRKNFLRMIAWPVFQFVVALLVIALMILILG 136

Query: 146 FTSPG--YMNVL---INDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + G   ++VL   ++ P G M+        L  + V+  +++
Sbjct: 137 LIAQGGAAIDVLGLGLSGPSGAMIWLTCTFGSLFALYVLYQILD 180


>gi|254302343|ref|ZP_04969701.1| MTB family outer membrane protein secretion main terminal branch
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322535|gb|EDK87785.1| MTB family outer membrane protein secretion main terminal branch
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 346

 Score = 42.0 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   +++ +    G S+ ES     +      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKDVLKKIHKNLIAGKSIFESFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|188586347|ref|YP_001917892.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351034|gb|ACB85304.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 403

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 35/195 (17%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           K    F   F          VR G+PV +++ +   Q  +  +      VI++ + G SL
Sbjct: 65  KELMLFTSQF-------STMVRCGIPVIESLDLQTQQLGNKNLTRGLTIVIKSLNSGKSL 117

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+ S      P     +  T +    +  G L E L  L+        +  K++     
Sbjct: 118 REAFSDASETFP-----WLITEMVGAGEESGRLDEILDRLALHYEQEYTLSQKLK---SA 169

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLG 166
                 +I      V  L+    P ++N+                           ++  
Sbjct: 170 ISYPILLIILAMVVVYILLTVIFPQFINLFEAQGAELPFITRMIFDSGIWMTENFSLIFV 229

Query: 167 VAAAFMLIGIMVMRL 181
           +A   M + + + R 
Sbjct: 230 LAILLMFLCVYIFRR 244


>gi|323489975|ref|ZP_08095196.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2]
 gi|323396271|gb|EGA89096.1| hypothetical protein GPDM_11510 [Planococcus donghaensis MPA1U2]
          Length = 403

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            D F   L      +RAG+ + D+V ++  Q    P++     + E    G SLS S+++
Sbjct: 61  RDQFIMFLRQFSTLMRAGVTIVDSVHILSQQVESKPLQRALAEIAEELRKGNSLSNSLAK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +          +  +    +L GN+ E+L +L+         + KV +          
Sbjct: 121 YPKI-----FEPLTINLVKAGELAGNIDESLDSLATHYDKAYQTRQKVISAMSYP----V 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
           ++G L   V   +  +       + +   G + L      
Sbjct: 172 VVGILAIGVVIFLLSSIVPMFADMFSGFGGELPLITQFVM 211


>gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens SBW25]
 gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens SBW25]
          Length = 400

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 11/165 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS+++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L + L  LS  L   + ++ +V    +     A+++
Sbjct: 123 DQ-----FSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217


>gi|225420076|ref|ZP_03762379.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme
           DSM 15981]
 gi|225041332|gb|EEG51578.1| hypothetical protein CLOSTASPAR_06419 [Clostridium asparagiforme
           DSM 15981]
          Length = 397

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           D  P     +   + AG+PVS A++V    + D  +     R+ ET   G +LSE+++ M
Sbjct: 60  DAIPPFCRQMSTMLGAGVPVSRALSVCGSSTRDRSLGRILARLNETVQKGRTLSEAMAEM 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P   V   +       +L G+L   +A ++        ++ K++         A +
Sbjct: 120 NGIFPGLLVHMAAMG-----ELNGSLDRVMAKMADHYSREAKLRKKIR---SAMTYPAIL 171

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           +       + ++    P + ++L     
Sbjct: 172 LVVTLAATAFMLTAVLPRFASLLSGTEL 199


>gi|110804168|ref|YP_687688.1| type IV pilin biogenesis protein [Shigella flexneri 5 str. 8401]
 gi|110613716|gb|ABF02383.1| Protein transport protein hofC [Shigella flexneri 5 str. 8401]
          Length = 400

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K+ +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|24111551|ref|NP_706061.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 301]
 gi|30061673|ref|NP_835844.1| type IV pilin biogenesis protein [Shigella flexneri 2a str. 2457T]
 gi|24050311|gb|AAN41768.1| putative integral membrane protein [Shigella flexneri 2a str. 301]
 gi|30039915|gb|AAP15649.1| putative integral membrane protein [Shigella flexneri 2a str.
           2457T]
 gi|281599468|gb|ADA72452.1| putative integral membrane protein [Shigella flexneri 2002017]
 gi|313646513|gb|EFS10974.1| bacterial type II secretion system F domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332762106|gb|EGJ92375.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri 4343-70]
 gi|332762314|gb|EGJ92581.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri 2747-71]
 gi|332764951|gb|EGJ95179.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-671]
 gi|332768894|gb|EGJ99073.1| bacterial type II secretion system F domain protein [Shigella
           flexneri 2930-71]
 gi|333009150|gb|EGK28606.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-218]
 gi|333010600|gb|EGK30033.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri VA-6]
 gi|333022364|gb|EGK41602.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-304]
          Length = 400

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K+ +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032]
 gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032]
          Length = 287

 Score = 42.0 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLS 64
             +F       LD++   + A      ++              F R+ E   +      S
Sbjct: 144 REEFRQAVCTYLDLVALQLSAAHGPVQSLERAAAICD---GWVFERISEALRMAQMQMHS 200

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN----MKAKVQ 120
             + +  +   + + E+     ++      G  + E L + +  LRD+       +A+  
Sbjct: 201 PWDELRDLADRIGIPELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGV 260

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
              ++   +  +   L F +   +
Sbjct: 261 TSRLDIPGALLVFVLLGFAIYPFL 284


>gi|191166327|ref|ZP_03028159.1| type IV pilus assembly protein PilC [Escherichia coli B7A]
 gi|293476765|ref|ZP_06665173.1| protein transporter HofC [Escherichia coli B088]
 gi|300816142|ref|ZP_07096365.1| type II secretion system F domain protein [Escherichia coli MS
           107-1]
 gi|309796094|ref|ZP_07690506.1| type II secretion system F domain protein [Escherichia coli MS
           145-7]
 gi|190903578|gb|EDV63295.1| type IV pilus assembly protein PilC [Escherichia coli B7A]
 gi|291321218|gb|EFE60660.1| protein transporter HofC [Escherichia coli B088]
 gi|300531349|gb|EFK52411.1| type II secretion system F domain protein [Escherichia coli MS
           107-1]
 gi|308120336|gb|EFO57598.1| type II secretion system F domain protein [Escherichia coli MS
           145-7]
 gi|320200377|gb|EFW74963.1| Type IV fimbrial assembly protein PilC [Escherichia coli EC4100B]
 gi|323171268|gb|EFZ56916.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli LT-68]
          Length = 400

 Score = 42.0 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +   + +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTEKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|322371097|ref|ZP_08045649.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
 gi|320549087|gb|EFW90749.1| type II secretion system protein [Haladaptatus paucihalophilus
           DX253]
          Length = 570

 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR---RVIETQH 60
           L++ R      D  +AL ++ R V+ GL V  A+     +      + F    R+     
Sbjct: 345 LVRNRVRAVEADLTDALYLVGRRVKEGLAVETAIVAAADEIGGETGAVFERATRIQRQLR 404

Query: 61  LGLSLSESISRMVRY--MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD----RKN 114
           +G+     +        +P         ++++ +  G     A+  ++  L D     + 
Sbjct: 405 MGV-RESFLGDYGALSTVPSPRARSAVALLALAADEGRPAGGAVLAMADHLDDLQSVERE 463

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
            + ++  ++   + +A I G L    +  +
Sbjct: 464 ARRELSQVTETLRHTAAIFGPLVSGATVAL 493


>gi|149190627|ref|ZP_01868895.1| general secretion pathway protein F [Vibrio shilonii AK1]
 gi|148835510|gb|EDL52479.1| general secretion pathway protein F [Vibrio shilonii AK1]
          Length = 409

 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +RS    +      G +LS+S++           
Sbjct: 78  LSTLVQSGMPLEECLKAVSEQSEKPRIRSMLAAIRSKVTEGYTLSDSLAEYPHIFD---- 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ +++K+Q    +A     ++      + 
Sbjct: 134 ELFRSMVA-AGEKSGHLDSILERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVAIV 188

Query: 142 TLVY 145
             + 
Sbjct: 189 AFLL 192


>gi|148656328|ref|YP_001276533.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1]
 gi|148568438|gb|ABQ90583.1| hypothetical protein RoseRS_2203 [Roseiflexus sp. RS-1]
          Length = 316

 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 65/187 (34%), Gaps = 15/187 (8%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++  A+     P  +  +   VRAG  +  A+  ++      P+++E+   +E   LG  
Sbjct: 124 QRYIARIDAALPAFVGRLEAQVRAGSGLQPAIEKVIADMPASPLKAEWSWFLE--RLGQP 181

Query: 65  L--------SESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKNM 115
           +        +   + +    P +  + F + + +  +     L + +      ++     
Sbjct: 182 IANGFLATAATVCAALRAQTPSRRHATFLSHLEIAIEQPHAALVQRIRAAYEAMQASDRR 241

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAAAFM 172
            + +     + + +   +  +   ++  ++               G +   +L +  +  
Sbjct: 242 ASMLATELSQMRNTGIALFLINVGITLYLFVVQNERFLTAYRSEPGLIVGAVLALVVSLP 301

Query: 173 LIGIMVM 179
           L+G  ++
Sbjct: 302 LVGGYLL 308


>gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str.
           Bath]
 gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str.
           Bath]
          Length = 364

 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHL 61
           L ++R              ++  ++AGLP+  A+ V+   + + V       RVIE    
Sbjct: 14  LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRALFVLEDLTREDVALNGMIGRVIELVKG 73

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  LS ++ R          S F   +    + GG L + L  LS  L   K ++  V  
Sbjct: 74  GSQLSAALER-----QEGVFSRFYLNLIRAGEAGGALEDVLERLSDYLERSKELRDTV-- 126

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
            S      A ++      +  L+ F  P     +   
Sbjct: 127 -STAMIYPAILLTMSVGSLLLLLTFVVPQ-FEEMFET 161


>gi|83943491|ref|ZP_00955950.1| general secretion pathway protein F [Sulfitobacter sp. EE-36]
 gi|83845723|gb|EAP83601.1| general secretion pathway protein F [Sulfitobacter sp. EE-36]
          Length = 405

 Score = 42.0 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 26/184 (14%)

Query: 19  ALDIIVRSVR----AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           AL ++ R +     +G+ V  A+  +  Q + P V S    +  +   G S ++++    
Sbjct: 67  ALTLLTRQLATLIGSGIGVEQALKTVADQQNKPAVTSLLLNLRASVLDGRSFAQALGEYP 126

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                 +    S       +  G L + + +LS  +  R   +  VQ   +     A + 
Sbjct: 127 HVFG--DFYRASVA---AGETSGQLGQVMEHLSGFVETRAKNRQTVQLALLYPAILAVVS 181

Query: 134 GSLPFCVSTLV------YFTSPGYMNVLIN----------DPRGHMLLGVAAAFMLIGIM 177
            ++   + T V       FTS G     +           +  G  +LGV AA +L G  
Sbjct: 182 LAVIVALLTFVVPDIVRVFTSRGAELPFLTRSLITVSDFINAWGIAMLGVLAAVILGGAS 241

Query: 178 VMRL 181
           ++R 
Sbjct: 242 LLRQ 245


>gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 483

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-------QSSDP---VRS 50
           ++   KKR    L D+ + +  ++  + AGL + +A   I         +       +  
Sbjct: 319 LRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEALPREGPGEERALSG 378

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           E R ++      +S SE+     R + L+  +    +I  + + G          SR LR
Sbjct: 379 ELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNG----------SRNLR 428

Query: 111 DRKNMKAK 118
           +   ++ +
Sbjct: 429 EALKLEME 436


>gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 203

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 5/143 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
            P A D++   +  G+    A+ ++V     D + +    V     LG S  ++ + +  
Sbjct: 62  LPLACDLLAACLETGVTSRRALELVVEALGRDSLNTPLPAVSSALRLGASAVQAWAEVPA 121

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-I 133
            +   E    +         G  L+  L  L+   R      A         + +  + +
Sbjct: 122 ELGWTE---VARAFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMALPLGV 178

Query: 134 GSLPFCVSTLVYFTSPGYMNVLI 156
             LP  +   V     G+ + L 
Sbjct: 179 CFLPAFLLVGVLPVIFGFAHSLW 201


>gi|311693308|gb|ADP96181.1| type II secretion system protein [marine bacterium HP15]
          Length = 409

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R    LD+       +    +AG+P+   +  +   +  P +      V      G +++
Sbjct: 61  RKKVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDVTTRLEGGTTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +         F  +I V    G  L +A   LS IL   ++ K +++      
Sbjct: 121 TAMQAHPKVFS----ELFIAMIHVGENTGM-LDDAFRRLSEILELERDTKRRLKQ---AM 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   ++I +L   +  + +   P + +V 
Sbjct: 173 RYPMFVIIALLSALMIVNFLVIPKFASVF 201


>gi|258593743|emb|CBE70084.1| Type 4 fimbrial assembly protein pilC [NC10 bacterium 'Dutch
           sediment']
          Length = 404

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 23/191 (12%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K +  K  A F       +D       AGLP+   +  +  Q  +     F+ ++     
Sbjct: 59  KKVKDKDLAVFTRQLATMID-------AGLPLVQCLDTLASQQPN---KGFKNILAEIRE 108

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +    + +  ++  P      ++ ++    + GG L   L  L+  +     ++ KV+ 
Sbjct: 109 DVEGGSTFTTALKRHPTVFTPLYANMVE-AGEAGGMLDTILNRLAVYIEKATTLRRKVKG 167

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN------------VLINDPRGHMLLGVAA 169
             +       +  ++   +   V     G+              V+         +    
Sbjct: 168 ALIYPSTIVVVAIAVVVFLLIFVIPVFAGFFEGSGVELPLPTQIVMTLSRLVRTYILACL 227

Query: 170 AFMLIGIMVMR 180
            F++ G++ +R
Sbjct: 228 GFLIAGVVGIR 238


>gi|300790608|ref|YP_003770899.1| type II secretion system protein [Amycolatopsis mediterranei U32]
 gi|299800122|gb|ADJ50497.1| type II secretion system protein [Amycolatopsis mediterranei U32]
          Length = 252

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           +  + G  +++ L    R          +++A     +ASA ++  LP     L      
Sbjct: 153 LAKRHGLPMADVLDAARRDAEAGLAFGRRMRAKLAGPRASAAVLTGLPVLCVLLGQAMGA 212

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
             ++VL     G +LL      +  G    R +
Sbjct: 213 APLSVLTGSTPGQVLLVAGCVLLWAGTAWCRAL 245


>gi|257389095|ref|YP_003178868.1| hypothetical protein Hmuk_3056 [Halomicrobium mukohataei DSM 12286]
 gi|257171402|gb|ACV49161.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
          Length = 564

 Score = 42.0 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 19/182 (10%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI-ETQHLGLSLSES 68
                  P+AL +I R V  G     AV  +         +    V    + LG+ L  +
Sbjct: 346 EAVEAGLPDALSLIGRRVTRGTATERAVEDVATAVPGATGTVLAEVAGRQRRLGVDLRTA 405

Query: 69  ISRMVRY-----MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR--------DRKNM 115
              +        +P +     ++++++ ++ G    +AL  ++  L+        +R+ +
Sbjct: 406 F--VGERGALATVPSERAESAASLLALSAREGRPAGDALLAMADHLQTIDEAEQANRRAV 463

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND---PRGHMLLGVAAAFM 172
                 LS  A   A ++G     +S  +    P   +V   D     G  +L +A    
Sbjct: 464 AQVTNTLSNTAAVFAPLVGGATVALSAAMGSAGPLGGSVATADLGLAVGWYVLVLAIVLT 523

Query: 173 LI 174
            +
Sbjct: 524 TL 525


>gi|333011492|gb|EGK30906.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-272]
 gi|333021737|gb|EGK40986.1| bacterial type II secretion system protein F domain protein
           [Shigella flexneri K-227]
          Length = 400

 Score = 41.6 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K+ +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|239817190|ref|YP_002946100.1| type II secretion system protein [Variovorax paradoxus S110]
 gi|239803767|gb|ACS20834.1| type II secretion system protein [Variovorax paradoxus S110]
          Length = 409

 Score = 41.6 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   +++P V      +      G SLS +  +  +Y      
Sbjct: 79  LATMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L + L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 134 DNLYCNLVEAGEAAGILEDLLDRLATYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIM 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +A +   +    +
Sbjct: 194 IFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWL 231


>gi|134298809|ref|YP_001112305.1| hypothetical protein Dred_0945 [Desulfotomaculum reducens MI-1]
 gi|134051509|gb|ABO49480.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
          Length = 261

 Score = 41.6 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 7/183 (3%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI--ETQHLGLS 64
           ++  K  D   N +        AGL     +  I     +P  SEF+ +          S
Sbjct: 80  RKLKKHRDQAKNFITSAGGLYGAGLETPQVLKAIAQSFPEPFASEFQSISARRELDPTTS 139

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + + +  +     L E+        + +        A A  S+ L     ++ ++    +
Sbjct: 140 VPKMLMELADKYNLPEMKA--EAAVIAAASTAGGPAAAARGSKRLGKALRLRDELIQERI 197

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM-RLMI 183
           +A     I       +  +              D  G + +  +   + +G+ ++ R  +
Sbjct: 198 QATYEPKIASIFVITIIGVGLLLDATAFREYFKD-GGQLAMSFS-CLIFVGLTLITRRAL 255

Query: 184 NFD 186
             D
Sbjct: 256 KVD 258


>gi|258510316|ref|YP_003183750.1| Type II secretion system F domain-containing protein
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477042|gb|ACV57361.1| Type II secretion system F domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 412

 Score = 41.6 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +DF          VRAG+P+  A+ V+  Q    P++     V      G +L ES++  
Sbjct: 68  EDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVAEVAAKVEGGTALWESLAEY 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P      F  ++    +  G+L E L + +R     +  +  +  +       A +
Sbjct: 128 PKVFP----PMFVQMVR-AGEASGSLEEVLESTARF---EEGQRETISKIKSALMYPALV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
                     L+    P +++V 
Sbjct: 180 SVMSVLVAGFLMINVIPSFVSVF 202


>gi|262170629|ref|ZP_06038307.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451]
 gi|261891705|gb|EEY37691.1| type 4 fimbrial assembly protein PilC [Vibrio mimicus MB-451]
          Length = 408

 Score = 41.6 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ +    G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAM-----RTASTHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|320179666|gb|EFW54615.1| Type IV fimbrial assembly protein PilC [Shigella boydii ATCC 9905]
 gi|332095395|gb|EGJ00418.1| bacterial type II secretion system protein F domain protein
           [Shigella boydii 5216-82]
          Length = 400

 Score = 41.6 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGKWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|258405228|ref|YP_003197970.1| Type II secretion system F domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797455|gb|ACV68392.1| Type II secretion system F domain protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 401

 Score = 41.6 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       +G+P+  A+ V+  Q+  D +R +   V      G SL E++ 
Sbjct: 66  FSRQFATMID-------SGVPILQALQVMCEQTENDKLRRKLYEVRNDIEGGSSLYEALR 118

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +              T +    + GG L   L  L+  +    N+K+KV+          
Sbjct: 119 KHPDV-----FDDLYTNMVNAGETGGVLDVILDRLATYIEKAANLKSKVR---AALIYPG 170

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158
            +       ++ ++ F  P     L ND
Sbjct: 171 VVSFVAVAVIAIILIFVIPT-FEQLFND 197


>gi|120553690|ref|YP_958041.1| type II secretion system protein [Marinobacter aquaeolei VT8]
 gi|120323539|gb|ABM17854.1| type II secretion system protein [Marinobacter aquaeolei VT8]
          Length = 409

 Score = 41.6 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R A  LD+       +    +AG+P+   +  +   +  P +      +      G +++
Sbjct: 61  RKAVTLDELIVFCRQMHALTKAGIPLIRTMRGLAETTRSPVLAEVLEDITNRLEGGTTMA 120

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++    +         F  +I V    G  L ++   LS IL   ++ K +V+      
Sbjct: 121 TAMQAHPKVFS----ELFIAMIHVGENTGM-LDDSFKRLSEILELERDTKRRVKQAL--- 172

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +++ +L   +  + +   P + +V 
Sbjct: 173 RYPTFVVIALLAALMVVNFLVIPRFASVF 201


>gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str.
           Paraca]
 gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39]
          Length = 377

 Score = 41.6 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 29  AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           AG+ ++  ++V+  Q  +   ++ +R I T    +   E +S  +R  P      F +++
Sbjct: 50  AGISMARCLSVLGEQCEN---AKLKRAINTLRADVEEGEELSLSMRKFPDVFDQLFVSMV 106

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
               + GG L E L  L+ ++      ++++++ +   K   +I  ++ F ++T +  T 
Sbjct: 107 W-AGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPKTVLFIAIAVFFGMATFLLPTF 165

Query: 149 PGYMN 153
            G   
Sbjct: 166 SGIFE 170


>gi|55378590|ref|YP_136440.1| hypothetical protein rrnAC1849 [Haloarcula marismortui ATCC 43049]
 gi|55231315|gb|AAV46734.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 360

 Score = 41.6 bits (97), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGL 63
           ++ R        PNAL  + R +  G  V  A+   V ++  P  +  +      +HLG 
Sbjct: 138 VRGRITDIEAGLPNALSAVGRRLDRGQSVEAALVEAVDETPKPTSAVIKAAAARQEHLGT 197

Query: 64  SLSESI 69
           S+  + 
Sbjct: 198 SVEGAF 203


>gi|330966320|gb|EGH66580.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 405

 Score = 41.6 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P + +V    N       L V A   ++    +
Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226


>gi|291303313|ref|YP_003514591.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM
           44728]
 gi|290572533|gb|ADD45498.1| hypothetical protein Snas_5869 [Stackebrandtia nassauensis DSM
           44728]
          Length = 242

 Score = 41.6 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%)

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             + +    G   S  L  L+  LR    +   +   +    ASA ++ +LP     L  
Sbjct: 136 ATVHITETAGAPTSRLLDQLAEDLRAEARIATTLTTNTAGILASARLLAALPVAGLALGQ 195

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 +  L++ P G     VA    L G+   R ++
Sbjct: 196 ALGTRPLETLLHTPVGAGCAAVAVTLQLAGLAWSRRIL 233


>gi|324112483|gb|EGC06460.1| type II secretion system protein F [Escherichia fergusonii B253]
 gi|325496039|gb|EGC93898.1| type IV pilin biogenesis protein [Escherichia fergusonii ECD227]
          Length = 400

 Score = 41.6 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 21/187 (11%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL 61
           H   +R+A+ +             ++AGL +S+ +A++ GQ   +  ++  + +      
Sbjct: 54  HWSSRRSAEVIHQL-------ATLLKAGLTLSEGLALLAGQHPSEQWQALLQTLAHELEQ 106

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +LS ++++     P          +    +L G L E    L+R  + +  +  KV+ 
Sbjct: 107 GNALSRALTQWSEVFPP-----LYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKK 161

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI---GI 176
                +    I+      V  +++F  P +  +    N P   +  GV A    I   G 
Sbjct: 162 AL---RYPLIILTLAIVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGG 218

Query: 177 MVMRLMI 183
           ++M L++
Sbjct: 219 LIMALIV 225


>gi|148547559|ref|YP_001267661.1| type II secretion system protein [Pseudomonas putida F1]
 gi|148511617|gb|ABQ78477.1| type II secretion system protein [Pseudomonas putida F1]
          Length = 396

 Score = 41.6 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ +  +R A F          +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 47  LRSMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       R R ++  + 
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 158

Query: 120 QALSM 124
              + 
Sbjct: 159 LVGAS 163


>gi|237743190|ref|ZP_04573671.1| general secretion pathway protein F [Fusobacterium sp. 7_1]
 gi|229433486|gb|EEO43698.1| general secretion pathway protein F [Fusobacterium sp. 7_1]
          Length = 346

 Score = 41.6 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   R++ +    G S+ ES     +      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGKSIFESFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++SR L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSITERLEDISRSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|298485508|ref|ZP_07003591.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159972|gb|EFI01010.1| Type 4 fimbrial assembly protein pilC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 405

 Score = 41.6 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTERLKAKIK--KAMTYPTAVLIVAFIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P + +V    N       L V A   ++    +
Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWL 226


>gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
           DSM 15981]
 gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
           DSM 15981]
          Length = 416

 Score = 41.6 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SEFRR 54
            K+R  + L D+P  +  ++  + AG+ V  A   I G   D +            E   
Sbjct: 258 AKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEMYE 317

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRK 113
                  G+   ++     R   L       +++    + G  N+ E L      + +  
Sbjct: 318 TCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLR---AEMTEAF 374

Query: 114 NMKA 117
            ++ 
Sbjct: 375 ELRK 378


>gi|330973678|gb|EGH73744.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 405

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGAENPNMRALVSSLKQEVSAGNSFAMALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVLIVAVIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G          M+IG+
Sbjct: 187 ILLIEVVPQFQSVF----AGFGAELPTFTLMVIGL 217


>gi|313679704|ref|YP_004057443.1| type II secretion system f domain [Oceanithermus profundus DSM
           14977]
 gi|313152419|gb|ADR36270.1| Type II secretion system F domain [Oceanithermus profundus DSM
           14977]
          Length = 406

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78
           +   + AGLP+  A+A++  Q+ +     F+++++        G S S+++++       
Sbjct: 74  LATMLSAGLPIVQAIAILERQTEN---KAFQKLLKEIRTDVEGGSSFSDALTK------H 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +  S     +    +  G L   L  L+  L     ++ K++           ++     
Sbjct: 125 KVFSRLYVNLVRAGETSGTLDGVLDRLATFLEKDLELRGKIK---SAMTYPVIVLVFALL 181

Query: 139 CVSTLVYFTSPGYMNVLIN 157
               L+    P +  +L +
Sbjct: 182 VTYFLLTGIVPQFAQILTD 200


>gi|289650993|ref|ZP_06482336.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 177

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +RS    + +    G S + ++ R   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F  ++    +  G L   L  ++      + +KAK++ 
Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK 169


>gi|331681489|ref|ZP_08382126.1| protein transport protein HofC [Escherichia coli H299]
 gi|331081710|gb|EGI52871.1| protein transport protein HofC [Escherichia coli H299]
          Length = 400

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                  G +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANKL 233

Query: 178 VMRL 181
           +MR 
Sbjct: 234 LMRR 237


>gi|296453318|ref|YP_003660461.1| hypothetical protein BLJ_0137 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182749|gb|ADG99630.1| hypothetical protein BLJ_0137 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 218

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           +  +LG      L  +    R  + M+          KA+  ++ +LP     L      
Sbjct: 120 LSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALPAVTVALGELLGA 179

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  L+  PRG + L +       G+  MR ++ 
Sbjct: 180 RPLAFLLGSPRGVVCLTLGGCCYAAGLAWMRALLK 214


>gi|221068971|ref|ZP_03545076.1| type II secretion system protein [Comamonas testosteroni KF-1]
 gi|220713994|gb|EED69362.1| type II secretion system protein [Comamonas testosteroni KF-1]
          Length = 405

 Score = 41.6 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   +++P V      +      G SLS +  +   Y      
Sbjct: 75  LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 DSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     LL +  +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYWWL 227


>gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 229

 Score = 41.6 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 11/165 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILNLGQFL 217


>gi|299529715|ref|ZP_07043152.1| type II secretion system protein [Comamonas testosteroni S44]
 gi|298722578|gb|EFI63498.1| type II secretion system protein [Comamonas testosteroni S44]
          Length = 405

 Score = 41.6 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   +++P V      +      G SLS +  +   Y      
Sbjct: 75  LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 NSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     LL +  +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYWWL 227


>gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 403

 Score = 41.6 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
            P     +   + AG+P+S A+AV    + D P+R    R+ E+ H G +L E++  M  
Sbjct: 68  LPPLCRQLSAMLAAGVPLSHALAVSYESAQDGPLRDNLMRLRESIHKGSTLFEAMEEMPG 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P    +    +I    +  G L   L  ++      + M  KV+           ++G
Sbjct: 128 VFP----NLLVYMIQT-GESSGKLDVMLGTMAEYYDREEEMNGKVR---AAMTYPVILLG 179

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                   ++    P + +++        LL        +G+
Sbjct: 180 VTIMSSVFMLTTVLPQFASMMKEQEL--PLLTRVLMSASLGL 219


>gi|313673605|ref|YP_004051716.1| type ii secretion system f domain [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940361|gb|ADR19553.1| Type II secretion system F domain [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 403

 Score = 41.6 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+  A+ +I  Q+S   VR  F  +      G   S  + +          
Sbjct: 69  LSTMISAGLPIMKALDIIASQASKKSVREMFEDIKSQIEQGAPFSRGLEKYRNVFG---- 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  ++    + GG L   L  L+  +    ++K KV+A  M       +   + + + 
Sbjct: 125 DLYINMVR-AGEAGGLLDNVLDRLAGYMEKAISLKRKVKAAMMYPSIVLTVAVVVVWGLM 183

Query: 142 TLVYFTSPGYMNVL 155
             +           
Sbjct: 184 VFIIPKFKEMYEGF 197


>gi|312882864|ref|ZP_07742596.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369383|gb|EFP96903.1| general secretion pathway protein F [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 408

 Score = 41.6 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 77  LSTLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVTEGYTLADSLADFPHVFD---- 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 133 ELFRSMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLQ----QAMIYPIVLVVFAVGIV 187

Query: 142 TLVY 145
             + 
Sbjct: 188 AFLL 191


>gi|170780637|ref|YP_001708969.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155205|emb|CAQ00306.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 333

 Score = 41.6 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +  + V  + G  L+ +L  L+  L D   ++           A++  +  +P     L
Sbjct: 106 LAAGLEVADRTGAPLARSLDRLAVSLVDIARVRRDAGTALAGPVATSRTVLLMPGAGLLL 165

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                   + VL+    G   LGV ++ + IG    R ++ 
Sbjct: 166 AAGLGFDPLRVLVTTLPGLACLGVGSSLVAIGWRWNRDLVR 206


>gi|119952476|ref|YP_949890.1| hypothetical protein AAur_pTC10016 [Arthrobacter aurescens TC1]
 gi|119951606|gb|ABM10516.1| putative Membrane protein [Arthrobacter aurescens TC1]
          Length = 317

 Score = 41.6 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    K   +F+      LD++  S+ AG   ++A+       +D V      + +T+ 
Sbjct: 146 LRTQAAKVRGQFVWGLSIYLDLVAMSMEAGKGHAEALPAAAKMGADRVGEGRGLLSDTRV 205

Query: 61  LG-------------LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
            G             ++  E++ R+     ++E+    + I + +  G  +  +L   + 
Sbjct: 206 FGEIRSAIQRAPEKAITAWEALGRLGERYGIRELISLRSSIELANDEGSRVKASLIARAE 265

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
            +R  +   A  +A +         + +    +   +Y  +P
Sbjct: 266 TMRSARLAGALERANNATESMRQLTMVA---AILAGIYIAAP 304


>gi|84393982|ref|ZP_00992721.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01]
 gi|84375376|gb|EAP92284.1| type IV pilin biogenesis protein PilC [Vibrio splendidus 12B01]
          Length = 409

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S    + +    G  +S+++         +  
Sbjct: 78  LATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAM-----RTASRHF 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +L GNL++    L+      + +K+KV    +     A ++        
Sbjct: 133 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALI---YPAMVVAVALTVSY 189

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 190 LMLTMVIPEFESMF 203


>gi|314917528|gb|EFS81359.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA1]
          Length = 300

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D    + + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
            +A +     + W++  +P  V  LV  T P
Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|309790163|ref|ZP_07684735.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6]
 gi|308227748|gb|EFO81404.1| hypothetical protein OSCT_0686 [Oscillochloris trichoides DG6]
          Length = 309

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 17/195 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + +   +       D   A+  +   +++G     A+  I+      P+R E+  ++  Q
Sbjct: 112 LAYAKARYIHALDRDLTTAVGRLSALLKSGSGFRSAIERIIRDMPTCPLRDEWAFLLTRQ 171

Query: 60  HLGL------SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----IL 109
              L      +  + ++ +         +   + +SV     G   + LA         +
Sbjct: 172 GANLATGSIATPQQVVAALSLQTLSPRHATLLSHLSVAV---GQPQDVLARRCEAAYSAI 228

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML---LG 166
           +D    + +      + + S   +G     ++  +  T    + +    P G ++   + 
Sbjct: 229 QDSDRRREEAATELAQMRYSGIAVGLAGVLMAIYLTATQWERVLIAYQTPLGIIVGILVI 288

Query: 167 VAAAFMLIGIMVMRL 181
            A    +IG  V+  
Sbjct: 289 SALLLPIIGGFVLAR 303


>gi|297623007|ref|YP_003704441.1| Type II secretion system F domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164187|gb|ADI13898.1| Type II secretion system F domain protein [Truepera radiovictrix
           DSM 17093]
          Length = 409

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 13/168 (7%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESIS 70
           F   F   ++       AGLPV  ++A++  Q+  D ++   +R+ E    G  LSE+++
Sbjct: 73  FSRQFATVIN-------AGLPVVQSLAILQRQAEKDALKEALKRIREEVETGTPLSEALA 125

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +             +    +  GNL   L  ++     +  ++ K+++         
Sbjct: 126 KHPKLFGR-----LYVYLVRAGEASGNLDSILERIALYQEKQAALRGKLRSALTYPTVVL 180

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            I   + + + T +     G +  L  +      + +A +  L G   
Sbjct: 181 LIALGVTYFLLTGIVPQFAGILTQLGGELPLMTRVLIAISDFLRGQWW 228


>gi|108763511|ref|YP_633923.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622]
 gi|46560496|gb|AAT00616.1| type IV pilin [Myxococcus xanthus]
 gi|108467391|gb|ABF92576.1| type 4 fimbrial assembly protein PilC [Myxococcus xanthus DK 1622]
          Length = 417

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGLP+   + ++  Q  +P  +     +      G + ++++ 
Sbjct: 83  FTRQFATMID-------AGLPLVQCLDILASQMDNPSFKKVLFAIKSKVEQGSTFADALK 135

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
              +     E+      +    ++GG L   L  L+      + +K+KV++         
Sbjct: 136 EHPKVFD--ELY---VQLCAAGEVGGILDAILNRLAAYREKNEKLKSKVKSAMTYP---- 186

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIND 158
            I+  +   V+ ++          +  D
Sbjct: 187 IIVILVAIGVTAVLLLKVTPVFEKMFAD 214


>gi|94312040|ref|YP_585250.1| type II secretion system protein [Cupriavidus metallidurans CH34]
 gi|93355892|gb|ABF09981.1| Type IV pilus assembly protein PilC [Cupriavidus metallidurans
           CH34]
          Length = 421

 Score = 41.6 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  ++ +I    ++P        +      G S++ +  R  +Y      
Sbjct: 91  LSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRRHPQY-----F 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG L   L  LS  +     +K ++++  +   A   +  ++   + 
Sbjct: 146 DTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQIKSAMIYPIAVLTVAFAVTVILM 205

Query: 142 TLVYFTSPGYMNVL 155
             V     G  +  
Sbjct: 206 LFVIPAFKGVFSSF 219


>gi|300905515|ref|ZP_07123278.1| type II secretion system F domain protein [Escherichia coli MS
           84-1]
 gi|301303794|ref|ZP_07209914.1| type II secretion system F domain protein [Escherichia coli MS
           124-1]
 gi|300402624|gb|EFJ86162.1| type II secretion system F domain protein [Escherichia coli MS
           84-1]
 gi|300840921|gb|EFK68681.1| type II secretion system F domain protein [Escherichia coli MS
           124-1]
 gi|315254904|gb|EFU34872.1| type II secretion system F domain protein [Escherichia coli MS
           85-1]
          Length = 400

 Score = 41.6 bits (97), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAILHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|332526519|ref|ZP_08402631.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
 gi|332110787|gb|EGJ10964.1| pilus tip-associated protein [Rubrivivax benzoatilyticus JA2]
          Length = 410

 Score = 41.6 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 13/177 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + + +K  A F              ++AG+P+  A  ++   +S+P +      +     
Sbjct: 66  RSIKQKDIAIFTRQL-------ATMMKAGVPLLQAFDIVARGASNPRMTKLLNDIRSDVE 118

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS +          Q        +    + GG L   L  L+        +K K++
Sbjct: 119 TGTSLSAAF-----RKHPQHFDSLYCNLIEAGEAGGILEALLERLAIYQEKTMALKQKIK 173

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +  M   A   +   +   +   V             D     L  +A +   +   
Sbjct: 174 SALMYPIAVMVVAFVVLTVIMIWVIPAFKEVFRSFGADLPAPTLFVIALSEFFVNWW 230


>gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
 gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
          Length = 596

 Score = 41.6 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL- 61
           +I  R      + P  +  +    R G  +   +  +   +    +R E +R++    + 
Sbjct: 117 MISNRKNSVESELPFFMAYVSTMARGGYSLEKLIERVSQLKIFSGIRLEAQRIVTHMKMF 176

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G     ++ R+    P           +   + GG++   L   +R + + +  + +   
Sbjct: 177 GEDPITALDRVAMNHPSTRFRDVMLGYTTTLRSGGDVVHYLETRTREVFESRMNEIRALF 236

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYF 146
             + +    + +  +   ++  ++F
Sbjct: 237 GRLASYLEVYTVFGVIMAIAVFIFF 261


>gi|257868320|ref|ZP_05647973.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257802434|gb|EEV31306.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
          Length = 278

 Score = 41.6 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 32  PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTVI 88
            V  ++ ++V +    +  E  ++I   ++G         +  +       ++ FF   +
Sbjct: 96  TVDQSLQLVVKRLDGELARELTQLIAALNVGSDPQRVSALLKELGERY-SADL-FFGQYL 153

Query: 89  SVQSQL----GGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
             Q +     G    E L ++    +++L      +    +L    K        L   +
Sbjct: 154 D-QLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGVKIMTIAFLLLILLM 212

Query: 141 STLVYFTS---PGYMNVLINDPRGHMLLGVAAAFMLI 174
               Y  +     Y+    +   G+ +  + +    I
Sbjct: 213 HGASYMMNGNLDQYIQGFSHHIIGYAVATICSVSFFI 249


>gi|300786332|ref|YP_003766623.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei
           U32]
 gi|299795846|gb|ADJ46221.1| type IV pilus assembly protein PilC [Amycolatopsis mediterranei
           U32]
          Length = 401

 Score = 41.2 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           VRAGLP+ DAV ++  ++++  V    R V +    G  LS+ + R  +  P      F 
Sbjct: 74  VRAGLPLIDAVRILGEEAANSSVARMLRSVEQGLRGGDRLSDCVDRHPKIFPE-----FY 128

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             I   ++L G L   L  L+  L      + K++A  +     A +       ++T V 
Sbjct: 129 REILRSAELTGQLDVVLDQLADYLERDLEARRKIKAALIYPAMIAVMSVVTVVVLATFVL 188

Query: 146 FTSPGYMNVL-------------INDPRG---HMLLGVAAAFMLIGIMVMR 180
                +   L             I D  G     LL    A + +    +R
Sbjct: 189 PRFKSFFASLNAKLPLPTRMLLAITDFLGAWWWALLAGLVALIALYSFAVR 239


>gi|264676897|ref|YP_003276803.1| type II secretion system protein [Comamonas testosteroni CNB-2]
 gi|262207409|gb|ACY31507.1| type II secretion system protein [Comamonas testosteroni CNB-2]
          Length = 405

 Score = 41.2 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   +++P V      +      G SLS +  +   Y      
Sbjct: 75  LATMMKAGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 NSLYCNLVEAGEAAGILESLLDRLATYMEKTEAIKSKIKSALMYPTSVMIVAFVVVTVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     LL +  +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMGISDYFVQYWWL 227


>gi|226939982|ref|YP_002795055.1| type II secretion system protein [Laribacter hongkongensis HLHK9]
 gi|226714908|gb|ACO74046.1| Bacterial type II secretion system protein [Laribacter
           hongkongensis HLHK9]
          Length = 401

 Score = 41.2 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 70/158 (44%), Gaps = 14/158 (8%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAG+P+ + +A +   +S P+ R     ++     G  LSE+++          V+  +
Sbjct: 73  LRAGVPLLEGLADLRDSASSPLFREILAMLVLDIEGGKRLSEALAEHPSVFDSVFVNLVA 132

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           T      +  G L + LA L+  L+ +  + A+ + + +     A++   L   +  L+ 
Sbjct: 133 TG-----ETTGALPDVLARLADQLKWQDELIAQTRKILL---YPAFVGTMLLLVIIFLMT 184

Query: 146 FTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMV 178
           +  P  ++ + +       +  +LL V+  F+  G ++
Sbjct: 185 YLVPQLVDFIRDIQKELPLQTRILLAVSDVFVHFGWLM 222


>gi|218703363|ref|YP_002410882.1| type IV pilin biogenesis protein [Escherichia coli UMN026]
 gi|293403176|ref|ZP_06647273.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412]
 gi|298378708|ref|ZP_06988592.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302]
 gi|300900864|ref|ZP_07119002.1| type II secretion system F domain protein [Escherichia coli MS
           198-1]
 gi|218430460|emb|CAR11326.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli UMN026]
 gi|284919883|emb|CBG32938.1| protein transport protein HofC [Escherichia coli 042]
 gi|291430091|gb|EFF03105.1| type IV pilin biogenesis protein [Escherichia coli FVEC1412]
 gi|298281042|gb|EFI22543.1| type IV pilin biogenesis protein [Escherichia coli FVEC1302]
 gi|300355665|gb|EFJ71535.1| type II secretion system F domain protein [Escherichia coli MS
           198-1]
          Length = 400

 Score = 41.2 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|171912199|ref|ZP_02927669.1| type II secretory pathway component [Verrucomicrobium spinosum DSM
           4136]
          Length = 424

 Score = 41.2 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 26/175 (14%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESIS 70
           +F ++  + L        AGL +  A+  +  ++   ++    R+ E    G   S ++S
Sbjct: 88  QFTEELSDLL-------GAGLQLEPALHSLENRNKSSLQVLAGRLREKVRDGTPFSAALS 140

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           ++               +    + GG+L+  L   +R +     ++AKV        ++A
Sbjct: 141 QVC-----ASFGDLYCNLVAAGEAGGSLAAILRRQARYMNQMAALRAKV--------SNA 187

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNV----LINDPRGHMLLGVAAAFMLIGIMVMRL 181
            I  +        + F   GY+      LI    G   L V A +ML G + ++ 
Sbjct: 188 LIYPAFIIASGIALAFVFSGYLLPKLTVLIKHTSGD--LPVFAKWMLAGNLALKQ 240


>gi|56476087|ref|YP_157676.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
 gi|56312130|emb|CAI06775.1| Bacterial type II secretion system protein [Aromatoleum aromaticum
           EbN1]
          Length = 392

 Score = 41.2 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  +RAG+P+++A++ +   +    VR+   ++      G SLS ++       P    
Sbjct: 63  MLALLRAGIPLAEAISALAEGEGRRAVRAVLLKLQGALREGRSLSNALESASEAFPS--- 119

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +   ++   +L  AL       +  + ++ K+         SA I   L   V 
Sbjct: 120 --FYIAMVRAAERTSDLDLALERYIAYQQQVETLRGKL--------VSAAIYPVLLLAVG 169

Query: 142 TLVYFTSPGYMNVLIND 158
            LV     GY+    + 
Sbjct: 170 GLVVLFLLGYVVPRFSH 186


>gi|288553597|ref|YP_003425532.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
 gi|288544757|gb|ADC48640.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
          Length = 402

 Score = 41.2 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L      ++AG+ V DA  ++  Q+S   +++    V +    G   S++     +  P 
Sbjct: 69  LRQFATLLKAGISVVDATVILREQTSSKKLKAALHDVEDELRAGNPFSQAAENQKKVFP- 127

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                F   ++   +LGGNL + L  L+     +   K KV +         ++   +  
Sbjct: 128 ---PLFVN-MAKAGELGGNLDDILERLASYYEKQHKTKQKVMSAMSYPIVVGFVAIIIVI 183

Query: 139 CVSTLVYFTSPGYMNVL 155
            + + V  T        
Sbjct: 184 FLLSYVVPTFADMFASF 200


>gi|237801182|ref|ZP_04589643.1| general secretion pathway protein F [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024039|gb|EGI04096.1| general secretion pathway protein F [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 228

 Score = 41.2 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|163782961|ref|ZP_02177956.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881641|gb|EDP75150.1| fimbrial assembly protein PilC2 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 397

 Score = 41.2 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            ++    L  +   + AG+ ++ A+ ++  Q+ D  V S    +  +   G  LS +   
Sbjct: 62  EEELSFVLLQLSVLIEAGISLARALELVASQTEDERVASALLEIKGSVERGEPLSSAF-- 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R   L     F + +   ++ G NL    A   + L    +MK+++          + 
Sbjct: 120 --RRSGL--FPEFLSEMLTAAETGENLERIFAIAGKHLETVADMKSRIVGAIT---YPSV 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           +IG   F +   + F  P    VL
Sbjct: 173 VIGFSIFALFVAIKFVVPKIAKVL 196


>gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1]
 gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1]
          Length = 404

 Score = 41.2 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 17/171 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VRAG+P+  A+  +  QS  P V S    V      G SL  +++   +  P  ++
Sbjct: 74  LATLVRAGIPIEGALRAVSKQSEKPKVASIMLAVRSRVVEGHSLESALAEFPQAFP--DL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-----LSMEAKASAWIIGSL 136
              +       +  G+L   L  LS     R   +  +Q      + + A A   ++G L
Sbjct: 132 YRATIG---AGEHSGHLDLVLEQLSDYTESRHRTQRTIQGAMIYPIVLTAFAVLIVVGML 188

Query: 137 PFCVSTLVYFTS------PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
            F V  +V          P    VLI           A   ++   + +  
Sbjct: 189 MFVVPKIVTVFESSGQQLPAMTQVLIGTSAFLQHWWWALLLVIGLFVWLWR 239


>gi|262402016|ref|ZP_06078581.1| general secretion pathway protein F [Vibrio sp. RC586]
 gi|262351988|gb|EEZ01119.1| general secretion pathway protein F [Vibrio sp. RC586]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ---------ALSMEAKASAWI 132
             F ++++   +  G+L   L  L+    +R+ M++K+Q          +      +  +
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLL 189

Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
              +P  V   V      P     L++  D   H  + +  + ML+  +V  L+   D+
Sbjct: 190 AAVVPKIVGQFVQIGQALPASTQFLLDASDFLQHWGIWLLISLMLLIYLVRWLLTKPDI 248


>gi|127511327|ref|YP_001092524.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126636622|gb|ABO22265.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 405

 Score = 41.2 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    R+G+P+  A+A +   S    ++     + E    G  LS +++           
Sbjct: 73  MYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLSSAMNHHPDVFD---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F ++I V  +  G L +A   LS  +   +  + +++      +   +++ ++   + 
Sbjct: 129 ALFVSMIHV-GENTGKLEDAFIQLSGYIEREQETRRRIK---AAMRYPIFVLMAVALAMV 184

Query: 142 TLVYFTSPGYMNVL 155
            L     P + ++ 
Sbjct: 185 VLNIMVIPKFADLF 198


>gi|312958905|ref|ZP_07773424.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6]
 gi|311286675|gb|EFQ65237.1| type IV pilus assembly protein PilC [Pseudomonas fluorescens WH6]
          Length = 402

 Score = 41.2 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 16/168 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  +I       PVR   + + +    G SL+E++ +  RY      
Sbjct: 72  LATLLKAGIPLLQAFDIIGEGFDNAPVRDLAQGLKQQIAAGSSLAEALHKHPRY-----F 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +KA+++       A   + G +   + 
Sbjct: 127 DDLYCNLVAAGEQAGALETLLERVAVHREKSEQLKARIKKAMTYPIAVLVVAGLVTGVLL 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVA----------AAFMLIGIMVM 179
             V          +     G  L  +A          A  + +G  VM
Sbjct: 187 VHVVPQFQSLFAGVDGQLPGFTLQVIALSEFMQRAWWAVMLGLGAGVM 234


>gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
           BAA-613]
          Length = 426

 Score = 41.2 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRSE 51
           ++  ++R  +   D+P  L  +   + AG+ +  A   I  +              V  E
Sbjct: 265 QNRTEERKRQLALDYPEVLSRLTIFLGAGMSIRTAWDKIALEYKMMVEQGRRRKRYVYEE 324

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI-LR 110
                     G+   ++     R   LQ       ++    + G   S+ L NL R  + 
Sbjct: 325 MYETSCQMKGGVPEGKAFEEFGRRCGLQSYMKLGGLLEQNRKNG---SKNLRNLLRTEMT 381

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           D    +        E   +  ++         +V    P  M  
Sbjct: 382 DAFEQRKHQARRLGEEAGTKLLLPLFILLSVVMVMIAVPALMEF 425


>gi|262166739|ref|ZP_06034476.1| general secretion pathway protein F [Vibrio mimicus VM223]
 gi|262026455|gb|EEY45123.1| general secretion pathway protein F [Vibrio mimicus VM223]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|291279694|ref|YP_003496529.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
 gi|290754396|dbj|BAI80773.1| general secretion pathway protein F [Deferribacter desulfuricans
           SSM1]
          Length = 402

 Score = 41.2 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
            P+    +   +++G+P+S+++ +   Q ++  V+S    +      G+ LS ++     
Sbjct: 68  LPDVFFQLAMLLKSGIPLSESLKITGNQVNNKKVKSILLALSAKVSEGIKLSVAMQEFND 127

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
           Y           ++    + G  L+E   N++R   +++    K++           ++ 
Sbjct: 128 YFS----DVLINLVRTSEETG-RLAETFENVARYEEEKRKSMDKIKV---AMIYPMIVLS 179

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
                V  L+ +  P   N+ 
Sbjct: 180 IGMGVVGFLLSYVVPKMKNIF 200


>gi|313498630|gb|ADR59996.1| Type II secretion system protein [Pseudomonas putida BIRD-1]
          Length = 396

 Score = 41.2 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ +  +R A F          +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 47  LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       R R ++  + 
Sbjct: 105 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 158

Query: 120 QALSM 124
              + 
Sbjct: 159 LVGAS 163


>gi|260495328|ref|ZP_05815455.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33]
 gi|260197106|gb|EEW94626.1| general secretion pathway protein F [Fusobacterium sp. 3_1_33]
          Length = 346

 Score = 41.2 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   R++ +    G S+ ES     +      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLRKIHKNLIAGKSIFESFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L      + K+  + +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSITERLEDISKSLEFDLTNQKKLGGILV---YPIVVISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|331004876|ref|ZP_08328293.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
 gi|330421330|gb|EGG95579.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
          Length = 408

 Score = 41.2 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSL 65
           KR     ++       +    +AGLP+   +  + V  SS P++     V      G+SL
Sbjct: 62  KRKKVSDEELVMFCRQMYTINKAGLPLMQGLESLSVSISSGPLQECLIDVTHRLETGVSL 121

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++            + F  +I +  + G  L    A +   +      K  ++     
Sbjct: 122 SSAMGYHRHIFN----NLFLGMIKIGEETG-KLDNIFAQMGVYISRDIETKKSIK---SA 173

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++++ ++   +  +     P + ++ 
Sbjct: 174 LRYPSFVLSAMVVALFVVNLMVIPAFADMF 203


>gi|170739450|ref|YP_001768105.1| type II secretion system protein [Methylobacterium sp. 4-46]
 gi|168193724|gb|ACA15671.1| type II secretion system protein [Methylobacterium sp. 4-46]
          Length = 404

 Score = 41.2 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           + AGL V  A+ ++  QS   +R     V++    G SLS +++   +  P + V     
Sbjct: 79  LGAGLTVDRALRLVERQSPGALRPVLADVLQRVLAGASLSRAMAAHPQAFPREMVDGL-- 136

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
                 +  G L E +A L+  L  R  ++  +      A     ++  +      +V  
Sbjct: 137 ---RAGEATGTLGEVVATLTASLERRDAVRRHL----ASAMIYPALLILMGLGTLGMVIG 189

Query: 147 TSPGYMNVLIN 157
                +  L  
Sbjct: 190 VLVPALLPLFE 200


>gi|161504730|ref|YP_001571842.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866077|gb|ABX22700.1| hypothetical protein SARI_02853 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score = 41.2 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAA 170
           I+      V  +++F  P +  +                         G ++L +A  
Sbjct: 169 IMTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILLLAVI 226


>gi|261211293|ref|ZP_05925582.1| general secretion pathway protein F [Vibrio sp. RC341]
 gi|260839794|gb|EEX66405.1| general secretion pathway protein F [Vibrio sp. RC341]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
             F ++++   +  G+L   L  L+    +R+ M++K+ QA+        + +G + F +
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLL 189

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA-------AAFMLIGIMVMRLMIN 184
           + +V      ++ +    P     L  A         ++LIG M++  ++ 
Sbjct: 190 AAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGIWLLIGFMLLIYLVR 240


>gi|300702980|ref|YP_003744582.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299070643|emb|CBJ41938.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 421

 Score = 41.2 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++P        +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +           ++         L+ F  P + NV 
Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216


>gi|258620395|ref|ZP_05715433.1| General secretion pathway protein F [Vibrio mimicus VM573]
 gi|258587274|gb|EEW11985.1| General secretion pathway protein F [Vibrio mimicus VM573]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|258624629|ref|ZP_05719565.1| General secretion pathway protein F [Vibrio mimicus VM603]
 gi|258583093|gb|EEW07906.1| General secretion pathway protein F [Vibrio mimicus VM603]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|296120678|ref|YP_003628456.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013018|gb|ADG66257.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 419

 Score = 41.2 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 29  AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  ++ ++ V      +++    VIE    G +LSE++ +  +             
Sbjct: 95  AGLPILRSLRILEVQAKPGALKNSLMGVIEDIESGSTLSEAMGKQPK-----AFDNLYVN 149

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    + GG L   L  L+     ++++K KVQ         A +I      V  ++Y+ 
Sbjct: 150 MVRAGEAGGALEVILQRLAEFKERQQSLKRKVQG---AMIYPAAVITVATLIVGFIMYWI 206

Query: 148 SPGY 151
            P +
Sbjct: 207 IPKF 210


>gi|115376269|ref|ZP_01463509.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
 gi|115366694|gb|EAU65689.1| type IV pilin [Stigmatella aurantiaca DW4/3-1]
          Length = 380

 Score = 41.2 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSE 67
           F   F   +D       AGLP+   + ++  Q  +P    F++V+         G + ++
Sbjct: 46  FTRQFATMID-------AGLPLVQCLDILGSQMENPA---FKKVVFAIKGKVEQGSTFAD 95

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++    +         F   +    ++GG L   L  L+      + +K KV+  S    
Sbjct: 96  ALKDHPKVFD----ELFVQ-LCAAGEVGGILDTILNRLAAYREKAEKLKGKVK--SAMTY 148

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
            S  I  ++      L+  T
Sbjct: 149 PSVVICVAIGVTALLLLKVT 168


>gi|297529397|ref|YP_003670672.1| type II secretion system F domain protein [Geobacillus sp. C56-T3]
 gi|297252649|gb|ADI26095.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3]
          Length = 342

 Score = 41.2 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81
           + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +    M +  +
Sbjct: 18  LGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALSVDRMAVN-L 76

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            FF+       +  G+L   +A     L  +     +++  S   +   +++  L   + 
Sbjct: 77  LFFA-------ERHGDLPRGMAETGETLAQKARFHEQLRRFS---RYPMFLLSLLIIMLV 126

Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170
            + ++  P +       +  RGH    +A  
Sbjct: 127 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVI 157


>gi|258620853|ref|ZP_05715887.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573]
 gi|258586241|gb|EEW10956.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM573]
          Length = 408

 Score = 41.2 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASSHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|258625145|ref|ZP_05720062.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603]
 gi|258582596|gb|EEW07428.1| type IV pilin biogenesis protein PilC [Vibrio mimicus VM603]
          Length = 408

 Score = 41.2 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ ++   G  LS+++            
Sbjct: 77  LATMLTTGVPIVQALKLVGDSHRKAEMKSILAQITKSVEAGTPLSKAM-----RTASSHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ GNL E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 142 TLVY 145
           T+V 
Sbjct: 192 TMVI 195


>gi|262170338|ref|ZP_06038016.1| general secretion pathway protein F [Vibrio mimicus MB-451]
 gi|261891414|gb|EEY37400.1| general secretion pathway protein F [Vibrio mimicus MB-451]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|327454295|gb|EGF00950.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA3]
 gi|328756054|gb|EGF69670.1| type II secretion system F domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 300

 Score = 41.2 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D    + + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
            +A +     + W++  +P  V  LV  T P
Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|313764977|gb|EFS36341.1| type II secretion system F domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313815463|gb|EFS53177.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313829027|gb|EFS66741.1| type II secretion system F domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314916258|gb|EFS80089.1| type II secretion system F domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314921862|gb|EFS85693.1| type II secretion system F domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930874|gb|EFS94705.1| type II secretion system F domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955331|gb|EFS99736.1| type II secretion system F domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959203|gb|EFT03305.1| type II secretion system F domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314969036|gb|EFT13134.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA1]
 gi|315099723|gb|EFT71699.1| type II secretion system F domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102364|gb|EFT74340.1| type II secretion system F domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109819|gb|EFT81795.1| type II secretion system F domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327334604|gb|EGE76315.1| membrane associated protein [Propionibacterium acnes HL097PA1]
 gi|327456360|gb|EGF03015.1| type II secretion system F domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328758899|gb|EGF72515.1| type II secretion system F domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 300

 Score = 41.2 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVR----AGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
            I+ R+     D    + + V  V     A      A+      S  PV +  R  +E  
Sbjct: 144 RIRSRSKAVRQDAAEVVLVYVDLVTLARLANQSAPRALVEAAQMSDHPVLTRIRMTLERS 203

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   S    +  +   + L E++    V+ +  Q G +L+ AL      +RD    + K
Sbjct: 204 RLEQQSPWAGLDGLSDELDLPELAELVEVLRLDDQ-GASLAGALRARVHEMRDAHLNQEK 262

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
            +A +     + W++  +P  V  LV  T P
Sbjct: 263 AEAQTASESLTIWMV--IPVLVLGLVLITPP 291


>gi|297572242|ref|YP_003698016.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932589|gb|ADH93397.1| hypothetical protein Arch_1715 [Arcanobacterium haemolyticum DSM
           20595]
          Length = 223

 Score = 41.2 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 33/98 (33%)

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            V  + +  G  +++ L   +  + D     +         + SA+++ +LP        
Sbjct: 116 VVCRMSAGTGAPVADVLDTCASGITDAGEAASARDIALAGPQTSAFMLAALPGVGIGFGT 175

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                 +    +   G  +L +  +    GI  +  ++
Sbjct: 176 MLGANPLGFFFSSIIGAGVLILGLSAEFAGIWWVWRLV 213


>gi|227505650|ref|ZP_03935699.1| type II secretion system protein [Corynebacterium striatum ATCC
           6940]
 gi|227197803|gb|EEI77851.1| type II secretion system protein [Corynebacterium striatum ATCC
           6940]
          Length = 257

 Score = 41.2 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 9/189 (4%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAV----IVGQSSDPVRSEFRRV 55
           ++ + + R A+   +     L  +   +RAG   + A+      +  +    VR   +  
Sbjct: 69  IRDVNQARQARRGREHLATFLGTVAADLRAGATTAGALQRGVNSVPAECPAAVRLPLQTA 128

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G  +   +           V     VI + +  G  L+  +      L   +  
Sbjct: 129 AGMAAHGGHIHAPLVEAAD----PAVVRLGHVIRMSTAHGVALANLIEQAQAQLDAARRH 184

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
               ++     +A+A I+  LP     +        ++ L+    G +LL V  A    G
Sbjct: 185 AKSTESSLQGPQATALILACLPLAGIAMGGAMGADSLSFLLGGGLGGLLLDVGVALACAG 244

Query: 176 IMVMRLMIN 184
               R ++ 
Sbjct: 245 FAWSRYILR 253


>gi|293380456|ref|ZP_06626523.1| type II secretion system F domain protein [Lactobacillus crispatus
           214-1]
 gi|290922963|gb|EFD99898.1| type II secretion system F domain protein [Lactobacillus crispatus
           214-1]
          Length = 333

 Score = 41.2 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           MK++   +  K    +     LD +  S+  G  + +++ ++        R    R+   
Sbjct: 1   MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASR 58

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115
              G S S  + ++           FS     Q       GNL E L +L+ + R ++  
Sbjct: 59  MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             K++    E      +   +   +  +  F S  + +   +D  G M++      +L+G
Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163

Query: 176 IMVMRLMINF 185
           +     ++  
Sbjct: 164 LYFFAKIVTL 173


>gi|307151679|ref|YP_003887063.1| type II secretion system F domain-containing protein [Cyanothece
           sp. PCC 7822]
 gi|306981907|gb|ADN13788.1| Type II secretion system F domain protein [Cyanothece sp. PCC 7822]
          Length = 404

 Score = 41.2 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           + ++  K  A F   F          + AG+ +   + V+  Q  +  ++     +    
Sbjct: 58  LNNITIKDKAVFSRQF-------SVMINAGVAIVRCLGVLSDQCGNKKLKKALAGISSEV 110

Query: 60  HLGLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             G  LSE++++        +        +    + GG L E LA L+++L D   +K +
Sbjct: 111 QQGSPLSEAMAK------YPDCFDQLYVSMVEAGETGGVLDEVLARLAKLLEDMARLKNQ 164

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +++      A   +   + F ++  +          L
Sbjct: 165 IKSAMAYPVAVGILAVIVFFAMTVFLIPVFAKIFLDL 201


>gi|87310223|ref|ZP_01092354.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM
           3645]
 gi|87286972|gb|EAQ78875.1| type 4 fimbrial assembly protein pilC [Blastopirellula marina DSM
           3645]
          Length = 401

 Score = 41.2 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+P+  ++ V+  Q+S+  ++     ++     G SL E++ R  +       
Sbjct: 70  LSSLIRSGVPLMRSLKVLREQASNVALQEILDDIVSRVEEGASLDEAMRRHPK-----AF 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +T +      GG L +AL  +++   D++++K +    +M A A    +G +   V 
Sbjct: 125 SEMATNMVRAGAEGGFLEDALDRVAKFTEDQEDLKGR----TMSALAYPVFLGVVGSFVL 180

Query: 142 TLVYFTSPGYMNVLIN 157
             +        + L  
Sbjct: 181 GFLLLVFVPQFDELFG 196


>gi|152966970|ref|YP_001362754.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151361487|gb|ABS04490.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 417

 Score = 41.2 bits (96), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 14/151 (9%)

Query: 20  LDIIVR----SVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
           L ++ R     V +GL +  A++++  Q+    + +    V      G SLS ++++  R
Sbjct: 80  LALMSRQFATMVSSGLSLIRALSILAEQAESKKLAATLGEVRAEVETGASLSTTLAKHDR 139

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P         +I    ++GG L + L  ++        +KAKV+           +  
Sbjct: 140 IFP----PLMINMIR-AGEVGGFLDQVLVQIADNFESEVKLKAKVK---SAMTYPVVVFI 191

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
                V  ++ F  P     + +D  G + L
Sbjct: 192 IAILAVVGMLLFIVP-VFTQMFSDLGGKLPL 221


>gi|330960771|gb|EGH61031.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 405

 Score = 41.2 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRKKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIK--KAMTYPTAVLIVAFIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            L+    P + +V    N       L V A   ++    + +++ F V
Sbjct: 188 LLIKVV-PQFQSVFAGFNAELPAFTLMVIALSEVVQQWWLAIVVLFFV 234


>gi|95931257|ref|ZP_01313976.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
           684]
 gi|95132693|gb|EAT14373.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
           684]
          Length = 404

 Score = 41.2 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +AG+P+ +A+  +V Q  +P ++    +V E    G SL ++++   R  P         
Sbjct: 79  QAGVPLDEALQSVVEQVENPAQARLYTQVREEVRQGSSLFQALAEQGRSFPDLYQRMVEV 138

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAWIIGSLPFCVSTLV 144
                 +  G L + L  L+  L ++  ++   V AL+     +   +G L F +S +V
Sbjct: 139 G-----ENSGTLDQVLLRLADFLEEQARLRSRTVSALAYPVLMAIVGVGVLLFLLSFVV 192


>gi|260771971|ref|ZP_05880888.1| general secretion pathway protein F [Vibrio metschnikovii CIP
           69.14]
 gi|260612838|gb|EEX38040.1| general secretion pathway protein F [Vibrio metschnikovii CIP
           69.14]
          Length = 406

 Score = 41.2 bits (96), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 75  LSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRAKVTEGYTLADSLADYPHIFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
             F ++++   +  G+L   L  L+    +R+ M++K+ QAL        + +G + F +
Sbjct: 131 DLFRSMVA-AGEKSGHLDAILERLADYAENRQKMRSKLMQALLYPIVLVVFAVGIVAFLL 189

Query: 141 STLV 144
           + +V
Sbjct: 190 AAVV 193


>gi|71908835|ref|YP_286422.1| type II secretion system protein [Dechloromonas aromatica RCB]
 gi|71848456|gb|AAZ47952.1| type II secretion system protein [Dechloromonas aromatica RCB]
          Length = 394

 Score = 41.2 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLS 64
           K R+ KF    P     ++  + AGL V + +  +  Q      SE    ++     G S
Sbjct: 50  KSRSGKF--QLPLFTRQLLSLLEAGLNVVEGLETLAEQDQGSGSSEVLNGLLTALRQGQS 107

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS ++ R     P      +   +    + G ++ E+L          + +K K+ + ++
Sbjct: 108 LSTALQRFPEVFP----ELYVATVKASERTG-DMPESLRRYLTFDEKLRELKKKLVSAAI 162

Query: 125 EAKASAWIIGSLPFCVSTLV 144
                  +   + F +   V
Sbjct: 163 YPLLLLAVGLLVTFFLLGFV 182


>gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
 gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain
           [Aciduliprofundum boonei T469]
 gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei
           T469]
          Length = 332

 Score = 41.2 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHL-G 62
            KKR        P A++ I     A + V+     +   +    +  E   +     L G
Sbjct: 143 AKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELSTRKEYGEIAKEAEWITRDTELLG 202

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
             +  +I    R  P  +   F   +   +  GG L     + S      K +  K    
Sbjct: 203 KDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYEKEKRLMLKKNME 262

Query: 123 SMEAKASAWIIGSLPFCVSTLVYF 146
           S+   A  ++   + F +  +V  
Sbjct: 263 SLGLFAEIYVTVGVAFPLFLVVII 286


>gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440]
 gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440]
          Length = 288

 Score = 41.2 bits (96), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 13/136 (9%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRY 75
           LD++   + A      ++              F R+ E+  L      S  + +  +   
Sbjct: 156 LDLVALQLSAAHGPVQSLERAAEVCD---GWVFDRIRESLRLAQLQMHSPWDELRELADQ 212

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + + E+     ++      G  + E L + +  LRD+       +A  +  +        
Sbjct: 213 IGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTGRLD------ 266

Query: 136 LPFCVSTLVYFTSPGY 151
           +P  +   V      Y
Sbjct: 267 IPGALLVFVLLGFATY 282


>gi|218557044|ref|YP_002389957.1| type IV pilin biogenesis protein [Escherichia coli S88]
 gi|218363813|emb|CAR01473.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli S88]
          Length = 400

 Score = 40.8 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|253689233|ref|YP_003018423.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755811|gb|ACT13887.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 408

 Score = 40.8 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +      V      G SL++++            
Sbjct: 77  LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L E L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGETSGHLDEVLNRLADYTEQRQQMRSRIQ 170


>gi|261417704|ref|YP_003251386.1| type II secretion system protein F [Geobacillus sp. Y412MC61]
 gi|319767487|ref|YP_004132988.1| type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
 gi|261374161|gb|ACX76904.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC61]
 gi|317112353|gb|ADU94845.1| Type II secretion system F domain protein [Geobacillus sp.
           Y412MC52]
          Length = 342

 Score = 40.8 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81
           + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +    M +  +
Sbjct: 18  LGRLLERGYPLGQALEFLAIQAPTHRRLEIERCLQQLRAGLPLFAAVEALSVDRMAVN-L 76

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            FF+       +  G+L   +A     L  +     +++  S   +   +++  L   + 
Sbjct: 77  LFFA-------ERHGDLPRGMAETGETLAQKARFHEQLRRFS---RYPMFLLSLLIIMLV 126

Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170
            + ++  P +       +  RGH    +A  
Sbjct: 127 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 157


>gi|220927574|ref|YP_002504483.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10]
 gi|219997902|gb|ACL74503.1| hypothetical protein Ccel_0115 [Clostridium cellulolyticum H10]
          Length = 319

 Score = 40.8 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ IK+R        P  +D    S  +   +  A+      S+  +     RV ++  
Sbjct: 148 LKYSIKQRI-------PAFIDSFRSSFVSHNRIKPALQECCSNSNKHLGRIMLRVSDS-- 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               L++S+  +   +     + F T++    + GG L   L  L++ +    N++ K  
Sbjct: 199 --SDLNDSLRAVRDRISDTWFNIFVTLLVNYRENGGELINQLYKLNKTITRYNNIEKKKN 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVY-FTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +  +            V  L+        M +  N  +    + + +   LI + ++
Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGTNMRLYYNTAQASGKIAIYSISALIVVRIL 316

Query: 180 RLM 182
           R +
Sbjct: 317 RRL 319


>gi|78223072|ref|YP_384819.1| type II secretion system protein [Geobacter metallireducens GS-15]
 gi|78194327|gb|ABB32094.1| type II secretion system protein [Geobacter metallireducens GS-15]
          Length = 402

 Score = 40.8 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++AGLP+  A+  I+ +     +    + V E    G++LS+++ +  +  P    
Sbjct: 72  LLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFP---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +   +    +  G+L   +      L+  + ++ +           + ++      ++
Sbjct: 128 HLYVASVR-AGERTGDLPLTIRRYIAFLKRVEEVRKR---FVSALVYPSILVTVATIAIA 183

Query: 142 TLVYFTSPGY 151
            L+ +  P +
Sbjct: 184 FLLVYVVPTF 193


>gi|269959417|ref|ZP_06173800.1| General secretion pathway protein F [Vibrio harveyi 1DA3]
 gi|269835854|gb|EEZ89930.1| General secretion pathway protein F [Vibrio harveyi 1DA3]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S+           +
Sbjct: 75  LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFDELYL 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +       +  G+L   L  L+  + +R+ M++K+    ++A     ++      + 
Sbjct: 135 SMVA-----AGEKSGHLDTVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185

Query: 142 -TLVYFTSPGYMNVLIN 157
             L+    P  +  +I 
Sbjct: 186 SLLLSSVVPKIIEPIIQ 202


>gi|331661478|ref|ZP_08362402.1| protein transport protein HofC [Escherichia coli TA143]
 gi|331061393|gb|EGI33356.1| protein transport protein HofC [Escherichia coli TA143]
          Length = 400

 Score = 40.8 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 28/183 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                  G +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPVLTQGIMTLASFSGEWGWLLVLFGFLLAIANKL 233

Query: 178 VMR 180
           +MR
Sbjct: 234 LMR 236


>gi|283781405|ref|YP_003372160.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439858|gb|ADB18300.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 398

 Score = 40.8 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V  G+ +S A+  I      P ++     +      G   S +++R  ++      
Sbjct: 69  LAVMVETGITLSTALDSIASHEQHPTLKRVLLDLKRHVESGDDFSSALARHPQHFD---- 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + ++I    Q G    E L  ++  LR +   + KV A          +  ++   + 
Sbjct: 125 RTYVSLIRASEQTGTT-GEMLDTVALYLRSQLETRQKVMAALAYPAVMLAVAVAVTIFLL 183

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           T +          L    +G  L  +  A M +  +++
Sbjct: 184 TYILPK----FEPLF-SRKGVKLPSITVAMMTMSDLMI 216


>gi|78224556|ref|YP_386303.1| general secretion pathway protein F [Geobacter metallireducens
           GS-15]
 gi|78195811|gb|ABB33578.1| General secretion pathway protein F [Geobacter metallireducens
           GS-15]
          Length = 403

 Score = 40.8 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 15/152 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V + +P+ +AV  +   +    ++    R+ E    G SL++++          E 
Sbjct: 73  LATLVGSQVPIFEAVTTLGEQEEPGELKKALGRIRERLAEGASLAKAL--------SLEP 124

Query: 82  SFFS---TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
             FS     +    +  G+L   L  L+  L +++ +++KV   +        +I     
Sbjct: 125 GLFSESYVAMVAAGEASGSLETVLEKLALFLEEQRAIRSKV---TASLAYPLLMIVVGGG 181

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            +  L+ F  P  + +  ++     L+ +A  
Sbjct: 182 VMLFLLTFVIPKIVTIFEDNKAALPLITIALI 213


>gi|91776494|ref|YP_546250.1| type II secretion system protein [Methylobacillus flagellatus KT]
 gi|91710481|gb|ABE50409.1| type II secretion system protein [Methylobacillus flagellatus KT]
          Length = 402

 Score = 40.8 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++    S+P V      +      G SLS++  +     PL   
Sbjct: 72  LATMMKAGVPLLQAFDIVGKGHSNPAVSKLLGDIKADVETGSSLSQAFRK----YPLYFD 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F  ++    +  G L   L  L+        +K K+++      +   +   +   + 
Sbjct: 128 NLFCNLVG-AGEQAGILDSLLDRLATYKEKILAIKGKIKSALFYPISIIVVAFVITAVIM 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V        +    D     ++ +A +   +    
Sbjct: 187 IFVIPAFKELFSSFGADLPAPTVMVMAISDFFVDYWW 223


>gi|116671913|ref|YP_832846.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24]
 gi|116612022|gb|ABK04746.1| hypothetical protein Arth_3371 [Arthrobacter sp. FB24]
          Length = 276

 Score = 40.8 bits (95), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +    + +  G  L++ L  L+  L    + +A  Q      KA+  ++  LP     L
Sbjct: 170 LAACFDIAAASGCPLADVLTRLAAQLEAEDDAEAARQTALAGPKATVTLLTWLPLLGLGL 229

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                   +++L+  P G   L       + G +    ++ 
Sbjct: 230 GVALGVDPLSILLGTPFGMAALAAGVGLTVAGRIWSARLVR 270


>gi|300690359|ref|YP_003751354.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299077419|emb|CBJ50045.1| type IV pilus assembly transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 421

 Score = 40.8 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 7/170 (4%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++P        +    
Sbjct: 69  KRRRAARGKKITPKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSLYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           ++  +   +   +   +   +   V     G             L+ +  
Sbjct: 184 KSAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGI 233


>gi|218547561|ref|YP_002381352.1| type IV pilin biogenesis protein [Escherichia fergusonii ATCC
           35469]
 gi|218355102|emb|CAQ87709.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia fergusonii ATCC 35469]
          Length = 411

 Score = 40.8 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61
           H   +R+A+ +             ++AGL +S+ +A++ GQ      ++  + +      
Sbjct: 65  HWSSRRSAEVIHQL-------ATLLKAGLTLSEGLALLAGQHPSKQWQALLQTLAHELEQ 117

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +LS ++++     P          +    +L G L E    L+R  + +  +  KV+ 
Sbjct: 118 GNALSRALTQWSEVFPP-----LYQAMIRTGELTGKLDECCFELARQQKAQHLLAEKVKK 172

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLI---GI 176
                +    I+      V  +++F  P +  +    N P   +  GV A    I   G 
Sbjct: 173 AL---RYPLIILTLAIVVVVAMLHFVLPEFAAIYKTFNTPLPALTQGVMATADFISQWGG 229

Query: 177 MVMRLMI 183
           ++M L++
Sbjct: 230 LIMALIV 236


>gi|82703025|ref|YP_412591.1| general secretion pathway protein F [Nitrosospira multiformis ATCC
           25196]
 gi|82411090|gb|ABB75199.1| General secretion pathway protein F [Nitrosospira multiformis ATCC
           25196]
          Length = 401

 Score = 40.8 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 17  PNALDIIVR----SVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISR 71
           P  L+++ R     + AGL V  ++A ++  + +P+  E    V      GLSLS ++  
Sbjct: 61  PEELNLLTRQMATLLTAGLTVEQSLAALIESAEEPMTREVLGGVKTEVIAGLSLSAALGS 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             R  P      F   +    +  G L   L +L+  L  R+ +K K
Sbjct: 121 YSRSFP-----DFYRALVHGGEESGTLPLVLRHLAEYLDARQTLKQK 162


>gi|78061921|ref|YP_371829.1| general secretion pathway protein F [Burkholderia sp. 383]
 gi|77969806|gb|ABB11185.1| General secretion pathway protein F [Burkholderia sp. 383]
          Length = 405

 Score = 40.8 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L ++  A                + AGLP+ ++++V+  Q+  D VR     +     
Sbjct: 61  RKLSQREQAIITRQL-------ASLLVAGLPLDESLSVLSEQAERDYVRELMASIRAEVV 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S + ++S+  R     E+      +    +  G L   L+ L+  +     +K K+ 
Sbjct: 114 GGHSFANALSQHPR--DFPEIY---RALVAAGEHTGKLGIVLSRLADYIEQSNALKQKIL 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLV 144
                      I   +   + + V
Sbjct: 169 LAFTYPGIVTLIAFGIVTFLLSYV 192


>gi|160941846|ref|ZP_02089173.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435343|gb|EDP13110.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 40.8 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 4/148 (2%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K++  +   + P  +  I + +++   V   +      +SD +R+E   +      G 
Sbjct: 137 RLKEKRDRVEQELPRFVATIEQDLKSSRDVLSILENFKKNTSDTLRAELDILTADMRSG- 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    M    +S     + +    G + +     LS   +  +  + K +A  
Sbjct: 196 SYEAALTRFEARMNSPMLSDVVRGL-IGVLRGDDSAAYFQLLSHDFKQLEMQRLKKEAQK 254

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +  K    I   L      + Y    GY
Sbjct: 255 IPPKI--RIFSFLMLLCFLMTYLAIIGY 280


>gi|83749807|ref|ZP_00946779.1| PilC [Ralstonia solanacearum UW551]
 gi|207744384|ref|YP_002260776.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
 gi|83723518|gb|EAP70724.1| PilC [Ralstonia solanacearum UW551]
 gi|206595789|emb|CAQ62716.1| fimbrial assembly protein [Ralstonia solanacearum IPO1609]
          Length = 421

 Score = 40.8 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++P        +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +           ++         L+ F  P + NV 
Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216


>gi|207721487|ref|YP_002251927.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
 gi|206586647|emb|CAQ17233.1| fimbrial assembly protein [Ralstonia solanacearum MolK2]
          Length = 421

 Score = 40.8 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 10/156 (6%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           K     R  K    D       +   ++AG+P+  +V +I    ++P        +    
Sbjct: 69  KRRRAARGKKITPKDVAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDI 128

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S++++  R  +Y            +    + GG L   L  LS  +     +KA++
Sbjct: 129 ESGSSMAQAFRRHPKY-----FDSLYCNLIDAGEQGGILDALLERLSMYMEKSIALKAQI 183

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +           ++         L+ F  P + NV 
Sbjct: 184 K---SAMIYPISVLTVAFLVTVVLMIFVVPAFKNVF 216


>gi|163802238|ref|ZP_02196133.1| general secretion pathway protein F [Vibrio sp. AND4]
 gi|159174043|gb|EDP58853.1| general secretion pathway protein F [Vibrio sp. AND4]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L +S+           +
Sbjct: 75  LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLGDSLGDYPHVFDELYL 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +       +  G+L   L  L+  + +R+ M++K+    ++A     ++      + 
Sbjct: 135 SMVA-----AGEKSGHLDAVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
           TL+ 
Sbjct: 186 TLLL 189


>gi|104783622|ref|YP_610120.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48]
 gi|95112609|emb|CAK17337.1| type IV fimbrial assembly protein [Pseudomonas entomophila L48]
          Length = 402

 Score = 40.8 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRY 75
           P     +   + AG+P+  A  V+   + D  +     R+ +    GL L+E++ R   +
Sbjct: 66  PGFSRQLATLLTAGVPLLQAFEVMARSTVDSGMAVLLARLKQDVAAGLGLAEALQRHPAW 125

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 + +  ++ V  Q G  L   L  ++ +L  R+ ++ KV+ 
Sbjct: 126 FD----ALYCNLVRVGEQSG-TLDRQLEQMAGMLEKRQALRQKVRK 166


>gi|90414687|ref|ZP_01222658.1| putative general secretion pathway protein F [Photobacterium
           profundum 3TCK]
 gi|90324229|gb|EAS40804.1| putative general secretion pathway protein F [Photobacterium
           profundum 3TCK]
          Length = 410

 Score = 40.8 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+ + +  +  Q+  P +R+    V      G +LS+S++           
Sbjct: 79  LATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLSDSMAEYPHI-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K+Q   +       +  ++   V+
Sbjct: 134 DQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYPTMLTLVAVAV---VA 190

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P  ++  +    G  L  +    +     V
Sbjct: 191 FLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225


>gi|292489326|ref|YP_003532213.1| type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
 gi|292898450|ref|YP_003537819.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291198298|emb|CBJ45404.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291554760|emb|CBA22553.1| Type IV pilus assembly protein tapC [Erwinia amylovora CFBP1430]
 gi|312173491|emb|CBX81745.1| Type IV pilus assembly protein tapC [Erwinia amylovora ATCC
           BAA-2158]
          Length = 399

 Score = 40.8 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   ++AG+P+   + ++     +   ++    + +    G   S+++       P
Sbjct: 64  FLRQLATLLKAGMPLPACLQLLADGHPEAGWQALLIHLHQRISAGEPFSQALREWPDVFP 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +L G L E    L+     ++ ++ KVQ      +    I+    
Sbjct: 124 P-----LIPALVHIGELTGELDECCLQLAIQQDKQQLLRQKVQKAL---RYPLVIMAVAL 175

Query: 138 FCVSTLVYFTSPGYMNVL 155
                ++ F  P ++ + 
Sbjct: 176 LVSIGMLVFVLPEFVAIY 193


>gi|303239931|ref|ZP_07326454.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302592641|gb|EFL62366.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 404

 Score = 40.8 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 29  AGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+ +  ++ ++  Q+ +  + +   +V E    G+SLSE++      +   E       
Sbjct: 78  AGVTIIGSLDLLRRQTENRKLANILSKVYEDVQKGMSLSEAMK-----VHKSEFPTIVIS 132

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    ++ GNL   L  L+  L     +K K++   +  KA   I G     V  ++ F 
Sbjct: 133 MIEIGEISGNLDTVLDRLATYLEKDNKVKQKIKTSMVYPKA---IGGIAIVAVIFMMIFV 189

Query: 148 SPGYMNVL 155
            P ++ + 
Sbjct: 190 VPNFITMF 197


>gi|88799609|ref|ZP_01115185.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
 gi|88777694|gb|EAR08893.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
          Length = 410

 Score = 40.8 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60
           +   +KR    +DD       +    R+G+P+  A+  +   +  PV SE  R V  +  
Sbjct: 61  RIFARKRVN--IDDLIMFSRQMYALTRSGIPLIRAINGLADATRSPVLSEVLREVTRSLT 118

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +L+ S     R         F  ++ +  +  G L  A   L   L   K+ + K+ 
Sbjct: 119 QGTNLANSFRAHPRVFG----DLFVAMVRM-GESTGRLDSAFKQLIDHLELEKDTRKKIA 173

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           + +   +    +   +   +  +  +  P + N+      G  L       +     ++R
Sbjct: 174 SAT---RYPIIVTVFIFVALFVVNLWVVPEFSNIF--SKLGADLPLPTVILITTSNFMLR 228


>gi|113869483|ref|YP_727972.1| general secretion pathway protein F [Ralstonia eutropha H16]
 gi|113528259|emb|CAJ94604.1| general secretion pathway protein F [Ralstonia eutropha H16]
          Length = 405

 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           + L  +  A F              + AGLP+ +A+  +  Q+    V      +     
Sbjct: 61  RKLSTQEQALFTRQL-------ASLIVAGLPLDEALGALADQAERAYVHELLAGIRAEVM 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS ++++  R     +       +    +  G+L   L  L+  +  R  + +K++
Sbjct: 114 GGSSLSVALAQHPR-----DFPDIYRALVSAGEHSGHLGLVLERLAGYIESRNTLTSKIR 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                      +  ++   V  L+ +  P  ++V  N  +   +L +   
Sbjct: 169 LAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANTKQKLPMLTIIML 215


>gi|91209168|ref|YP_539154.1| type IV pilin biogenesis protein [Escherichia coli UTI89]
 gi|117622389|ref|YP_851302.1| type IV pilin biogenesis protein [Escherichia coli APEC O1]
 gi|237704253|ref|ZP_04534734.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA]
 gi|91070742|gb|ABE05623.1| protein transport protein HofC [Escherichia coli UTI89]
 gi|115511513|gb|ABI99587.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli APEC O1]
 gi|226902165|gb|EEH88424.1| type IV pilin biogenesis protein [Escherichia sp. 3_2_53FAA]
 gi|294490593|gb|ADE89349.1| type IV pilus assembly protein PilC [Escherichia coli IHE3034]
 gi|307629677|gb|ADN73981.1| type IV pilin biogenesis protein [Escherichia coli UM146]
 gi|315285150|gb|EFU44595.1| type II secretion system F domain protein [Escherichia coli MS
           110-3]
 gi|323950900|gb|EGB46777.1| type II secretion system protein F [Escherichia coli H252]
 gi|323955302|gb|EGB51075.1| type II secretion system protein F [Escherichia coli H263]
          Length = 400

 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514]
 gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514]
          Length = 403

 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70
           F       LD       AGL +  ++  +  Q+++ V R   + V      G S SE++ 
Sbjct: 66  FTRQLATMLD-------AGLAMVQSLQALAEQTTNKVMRDVIKDVTARVEAGDSFSEALV 118

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +       +     +    + GG LSE LA L+  L +   ++ KV++  M      
Sbjct: 119 KHPKV-----FNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSAMMYPTVVT 173

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  S+   +   V           
Sbjct: 174 CVAISITIFLMVKVVPVFGEIFESF 198


>gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
 gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
          Length = 204

 Score = 40.8 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           +AL +   ++R+GL   +A+  +       V  + R V      G   + S + +     
Sbjct: 67  DALVLCALALRSGLGPIEALEAVADHVGGAVARQLRVVASAHRWGQDAATSWAHVGEAWR 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              +++         Q G   +        +L   + M+ +  +    A   A ++  LP
Sbjct: 127 PAALAW-----QAAEQSGAAPAGV------VLAAAERMRREEASRVEAAVQRAGVLLVLP 175

Query: 138 FCVSTLVYFTSPGYMNVLIN 157
                L  F     + V+++
Sbjct: 176 LGACFLPGFVGTTVVPVVLH 195


>gi|218290591|ref|ZP_03494693.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239375|gb|EED06572.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 268

 Score = 40.8 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 7   KRTAKFLDDFPNAL----DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++  +F DD    L     ++V     G+   D + ++V  +   +R    R  +     
Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMVSLYERGIAPEDMLPLLVSATDGALRQLLERAYQRMQTT 167

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119
            +L+++++ M +   L E+   ++V     +  G +L   L  ++   R +   N++ + 
Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLQQMAVDERAQFLFNLEKRA 227

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +   M     A    +LP      +      +
Sbjct: 228 ERKKMSVLIEAIAFIALPTIFLVGILILMRAW 259


>gi|119897093|ref|YP_932306.1| general secretion pathway protein F [Azoarcus sp. BH72]
 gi|119669506|emb|CAL93419.1| general secretion pathway protein F [Azoarcus sp. BH72]
          Length = 401

 Score = 40.8 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
            +       +   + AG+P+ +A+  +   ++ P    +  +      G +LS++     
Sbjct: 61  RELGAFCAQLAHLLEAGIPLVEALRDLGEGNATPAARPWDDIATALEGGDTLSDAC---A 117

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L +  F S  +    +  G L   L +L+  L     + A ++ +S+     A+++
Sbjct: 118 ARADLFDEVFVS--LLRAGEQAGRLPAVLHHLAATLERSAQVAAHLRRMSI---YPAFVL 172

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             L     T + F  P   ++ 
Sbjct: 173 AVLAVAAGTALVFVVPQLSSLF 194


>gi|51246634|ref|YP_066518.1| type 4 fimbrial assembly protein (PilC) [Desulfotalea psychrophila
           LSv54]
 gi|50877671|emb|CAG37511.1| probable type 4 fimbrial assembly protein (PilC) [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score = 40.8 bits (95), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           ++   + AGLP+   + ++  Q  +P  +    ++      G +L++S+ +  +      
Sbjct: 71  MLSTMIDAGLPLVQGIEILEQQQENPTFKKAIGKIKGDVESGTTLADSMRKHPKIFD--- 127

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              F+ +I    + GG L   L  L+  +     +K K++ 
Sbjct: 128 -KLFTNMIE-AGETGGILDTILQRLAAFMEKSMALKKKIKG 166


>gi|119472644|ref|ZP_01614635.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
           TW-7]
 gi|119444848|gb|EAW26149.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
           TW-7]
          Length = 409

 Score = 40.8 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  A+ +I  G ++  V      + +    G  LS+++ +  RY      
Sbjct: 79  IATMLMAGVPLIQAIEMIGTGSTNKSVGKLMETIGDEVKAGQPLSQALRKHPRY-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L +    ++      + +K+K++           ++       S
Sbjct: 134 DDLYCDLVASGEQSGALDKIFDRVALYKEKSEALKSKIKK---AMFYPISVLVIAGIVTS 190

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            L+ F  P + ++            L V      +      ++I  
Sbjct: 191 ILLIFVVPQFQDIFSGFGAELPAFTLFVIGISEFMQAYWWMILIAI 236


>gi|26990137|ref|NP_745562.1| type II secretion system protein [Pseudomonas putida KT2440]
 gi|24985071|gb|AAN69026.1|AE016534_9 type II secretion pathway protein XcpS [Pseudomonas putida KT2440]
          Length = 403

 Score = 40.8 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ +  +R A F          +   + AGLP+ DA+  +  +S     R     ++   
Sbjct: 54  LRGMAWRREAAFDLVL--FSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQL 111

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS+++ +  R  P          +   S+  G L +AL       R R ++  + 
Sbjct: 112 YEGRSLSQALGQQPRVFPP-----LYVALVQSSERTGALGDALTRYISY-RQRLDLVRQK 165

Query: 120 QALSM 124
              + 
Sbjct: 166 LVGAS 170


>gi|148979562|ref|ZP_01815593.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium
           SWAT-3]
 gi|145961746|gb|EDK27042.1| type IV pilin biogenesis protein PilC [Vibrionales bacterium
           SWAT-3]
          Length = 409

 Score = 40.8 bits (95), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S    + +    G  +S+++         +  
Sbjct: 78  LATMLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAM-----RTASRHF 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +L GNL++    L+      + +K+KV    +     A ++        
Sbjct: 133 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALI---YPAMVVTVALTVSY 189

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 190 LMLTMVIPEFESMF 203


>gi|302535289|ref|ZP_07287631.1| predicted protein [Streptomyces sp. C]
 gi|302444184|gb|EFL16000.1| predicted protein [Streptomyces sp. C]
          Length = 306

 Score = 40.8 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 1/155 (0%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  ++ A+         P  +E   V+     G  ++ ++ +  R    + ++  +    
Sbjct: 149 GRALTVAIRRTAAGPGGPGAAETG-VLAAAAFGGDVAGALHQAAREPGARGLAGMAACWR 207

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V    G  L+  L  L   LR  ++ +  ++A    A+++  ++  LP     +      
Sbjct: 208 VSVDGGAGLAAGLDRLEGALRAERDREESLRAQLAGARSTTVVLALLPLVGLLMGTALGA 267

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             + VL++ P G   L        +G++  R ++ 
Sbjct: 268 DPLRVLLHSPVGWGCLLAGGLLETLGLLWCRRIVR 302


>gi|229521805|ref|ZP_04411223.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80]
 gi|229341399|gb|EEO06403.1| general secretion pathway protein F [Vibrio cholerae TM 11079-80]
 gi|327485200|gb|AEA79607.1| General secretion pathway protein F [Vibrio cholerae LMA3894-4]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|330900576|gb|EGH31995.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 231

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium
           sticklandii DSM 519]
 gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium
           sticklandii]
          Length = 405

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+S+A+ V+  Q+ +  +R   + V      GL LS+++ +  +  P    +   
Sbjct: 79  LNAGMPLSNALDVLGDQTENKVLRRTVKEVYSEVQTGLILSQAMKKHKKVFP----NLLI 134

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           T++    ++ GNL   LA +S        + +K++         A +  +    V  L+ 
Sbjct: 135 TMVE-AGEMTGNLDNVLAKMSEHYEKENKINSKIKG---AMVYPAILSVAAVGVVIFLLT 190

Query: 146 FTSPGYMNVLIND 158
           F  P +  +  + 
Sbjct: 191 FIMPTFTEMFTSS 203


>gi|257485376|ref|ZP_05639417.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|218288158|ref|ZP_03492457.1| type II secretion system protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241517|gb|EED08690.1| type II secretion system protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 412

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
           +DF          VRAG+P+  A+ V+  Q    P++     V      G +L ES++  
Sbjct: 68  EDFVPFCRQFATLVRAGVPLVPALQVLEEQLRKGPLKKAVGEVAAKVEGGTALWESLAEY 127

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P      F  ++    +  G+L E L + +R     +  +  V  +       A +
Sbjct: 128 PKVFP----PMFVQMVR-AGEASGSLEEVLESTARF---EEGQRETVSKIKSALMYPALV 179

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
                     L+    P +++V 
Sbjct: 180 SLMSVLVAGFLMINVIPSFVSVF 202


>gi|156972925|ref|YP_001443832.1| general secretion pathway protein F [Vibrio harveyi ATCC BAA-1116]
 gi|156524519|gb|ABU69605.1| hypothetical protein VIBHAR_00603 [Vibrio harveyi ATCC BAA-1116]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S+           +
Sbjct: 75  LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFDELYL 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +       +  G+L   L  L+  + +R+ M++K+    ++A     ++      + 
Sbjct: 135 SMVA-----AGEKSGHLDTVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
           +L+ 
Sbjct: 186 SLLL 189


>gi|26246040|ref|NP_752079.1| type IV pilin biogenesis protein [Escherichia coli CFT073]
 gi|227884991|ref|ZP_04002796.1| type IV pilin biogenesis protein [Escherichia coli 83972]
 gi|300938499|ref|ZP_07153239.1| type II secretion system F domain protein [Escherichia coli MS
           21-1]
 gi|300993822|ref|ZP_07180562.1| type II secretion system F domain protein [Escherichia coli MS
           45-1]
 gi|301050002|ref|ZP_07196918.1| type II secretion system F domain protein [Escherichia coli MS
           185-1]
 gi|26106437|gb|AAN78623.1|AE016755_123 Protein transport protein hofC [Escherichia coli CFT073]
 gi|227838129|gb|EEJ48595.1| type IV pilin biogenesis protein [Escherichia coli 83972]
 gi|300298275|gb|EFJ54660.1| type II secretion system F domain protein [Escherichia coli MS
           185-1]
 gi|300406462|gb|EFJ90000.1| type II secretion system F domain protein [Escherichia coli MS
           45-1]
 gi|300456568|gb|EFK20061.1| type II secretion system F domain protein [Escherichia coli MS
           21-1]
 gi|307551950|gb|ADN44725.1| protein transport protein HofC [Escherichia coli ABU 83972]
 gi|315294670|gb|EFU54017.1| type II secretion system F domain protein [Escherichia coli MS
           153-1]
 gi|323190214|gb|EFZ75490.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli RN587/1]
          Length = 400

 Score = 40.8 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|229513659|ref|ZP_04403123.1| general secretion pathway protein F [Vibrio cholerae TMA 21]
 gi|229349536|gb|EEO14492.1| general secretion pathway protein F [Vibrio cholerae TMA 21]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|85858125|ref|YP_460328.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
 gi|85721216|gb|ABC76159.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
          Length = 403

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 6/144 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISR 71
                    I    + +GLP+   + ++   +++         + E    G SL++++ +
Sbjct: 62  EKQIVVFARIFSTMINSGLPLIQCLDLLAQQETNKTFAKAITAIKEDIEGGSSLTDALKK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                       F  +I+   + GG L   L  LS  +     +K KV+       +   
Sbjct: 122 YPEIFD----ELFVNLIA-AGESGGILDVILGRLSTYMEKAMKLKRKVKGALTYPISVLV 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           I   +   +   V          +
Sbjct: 177 ISIGVVTLLLLKVIPVFQKLFADM 200


>gi|121586625|ref|ZP_01676410.1| general secretion pathway protein F [Vibrio cholerae 2740-80]
 gi|153212531|ref|ZP_01948278.1| general secretion pathway protein F [Vibrio cholerae 1587]
 gi|153802195|ref|ZP_01956781.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|153802931|ref|ZP_01957517.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|153825519|ref|ZP_01978186.1| general secretion pathway protein F [Vibrio cholerae MZO-2]
 gi|153828358|ref|ZP_01981025.1| general secretion pathway protein F [Vibrio cholerae 623-39]
 gi|229527343|ref|ZP_04416735.1| general secretion pathway protein F [Vibrio cholerae 12129(1)]
 gi|254225448|ref|ZP_04919059.1| general secretion pathway protein F [Vibrio cholerae V51]
 gi|254285926|ref|ZP_04960888.1| general secretion pathway protein F [Vibrio cholerae AM-19226]
 gi|297581571|ref|ZP_06943494.1| general secretion pathway protein F [Vibrio cholerae RC385]
 gi|121549184|gb|EAX59217.1| general secretion pathway protein F [Vibrio cholerae 2740-80]
 gi|124116402|gb|EAY35222.1| general secretion pathway protein F [Vibrio cholerae 1587]
 gi|124121544|gb|EAY40287.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|124122269|gb|EAY41012.1| general secretion pathway protein F [Vibrio cholerae MZO-3]
 gi|125622082|gb|EAZ50405.1| general secretion pathway protein F [Vibrio cholerae V51]
 gi|148876188|gb|EDL74323.1| general secretion pathway protein F [Vibrio cholerae 623-39]
 gi|149740804|gb|EDM54895.1| general secretion pathway protein F [Vibrio cholerae MZO-2]
 gi|150424108|gb|EDN16047.1| general secretion pathway protein F [Vibrio cholerae AM-19226]
 gi|229334975|gb|EEO00460.1| general secretion pathway protein F [Vibrio cholerae 12129(1)]
 gi|297534409|gb|EFH73247.1| general secretion pathway protein F [Vibrio cholerae RC385]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|15642725|ref|NP_232358.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121726690|ref|ZP_01679915.1| general secretion pathway protein F [Vibrio cholerae V52]
 gi|147675103|ref|YP_001218219.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|153817446|ref|ZP_01970113.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457]
 gi|153821264|ref|ZP_01973931.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|227082845|ref|YP_002811396.1| general secretion pathway protein F [Vibrio cholerae M66-2]
 gi|229507221|ref|ZP_04396726.1| general secretion pathway protein F [Vibrio cholerae BX 330286]
 gi|229509858|ref|ZP_04399339.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|229516979|ref|ZP_04406425.1| general secretion pathway protein F [Vibrio cholerae RC9]
 gi|229606727|ref|YP_002877375.1| general secretion pathway protein F [Vibrio cholerae MJ-1236]
 gi|254851268|ref|ZP_05240618.1| general secretion pathway protein F [Vibrio cholerae MO10]
 gi|255744311|ref|ZP_05418263.1| general secretion pathway protein F [Vibrio cholera CIRS 101]
 gi|262158579|ref|ZP_06029694.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1]
 gi|262170028|ref|ZP_06037717.1| general secretion pathway protein F [Vibrio cholerae RC27]
 gi|298500454|ref|ZP_07010258.1| general secretion pathway protein F [Vibrio cholerae MAK 757]
 gi|1170056|sp|P45780|GSPF_VIBCH RecName: Full=General secretion pathway protein F; AltName:
           Full=Cholera toxin secretion protein epsF
 gi|609627|gb|AAA58787.1| EpsF [Vibrio cholerae]
 gi|9657329|gb|AAF95871.1| general secretion pathway protein F [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630851|gb|EAX63233.1| general secretion pathway protein F [Vibrio cholerae V52]
 gi|126512032|gb|EAZ74626.1| general secretion pathway protein F [Vibrio cholerae NCTC 8457]
 gi|126521196|gb|EAZ78419.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|146316986|gb|ABQ21525.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|227010733|gb|ACP06945.1| general secretion pathway protein F [Vibrio cholerae M66-2]
 gi|227014617|gb|ACP10827.1| general secretion pathway protein F [Vibrio cholerae O395]
 gi|229346042|gb|EEO11014.1| general secretion pathway protein F [Vibrio cholerae RC9]
 gi|229353332|gb|EEO18271.1| general secretion pathway protein F [Vibrio cholerae B33]
 gi|229354726|gb|EEO19647.1| general secretion pathway protein F [Vibrio cholerae BX 330286]
 gi|229369382|gb|ACQ59805.1| general secretion pathway protein F [Vibrio cholerae MJ-1236]
 gi|254846973|gb|EET25387.1| general secretion pathway protein F [Vibrio cholerae MO10]
 gi|255737836|gb|EET93229.1| general secretion pathway protein F [Vibrio cholera CIRS 101]
 gi|262021436|gb|EEY40148.1| general secretion pathway protein F [Vibrio cholerae RC27]
 gi|262029740|gb|EEY48389.1| general secretion pathway protein F [Vibrio cholerae INDRE 91/1]
 gi|297540623|gb|EFH76680.1| general secretion pathway protein F [Vibrio cholerae MAK 757]
          Length = 406

 Score = 40.8 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|291529647|emb|CBK95233.1| Bacterial type II secretion system protein F domain [Eubacterium
           rectale M104/1]
          Length = 288

 Score = 40.8 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
           L+L +S+         +++   + ++    + G  ++  L ++S+ + D   ++ + + +
Sbjct: 192 LTLEDSVELFNARFNNEQIDNLTVILRQSLRTG-QIANMLDDVSKQIEDINKLRTEQEKI 250

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            M+ +     I       + ++Y T    + +L
Sbjct: 251 KMQRQTKMMNIAFFVGISALIIYITGYQLVELL 283


>gi|108804005|ref|YP_643942.1| type II secretion system protein [Rubrobacter xylanophilus DSM
           9941]
 gi|108765248|gb|ABG04130.1| type II secretion system protein [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 40.8 bits (95), Expect = 0.098,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+  A+ ++  Q+++  +R    +V      G++LSE++ R          
Sbjct: 71  LSTMINAGLPIVRALHILEEQTANKKLRDVIVKVRSDVEAGMALSEALERHPEVFG---- 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  ++    ++GG L   L  ++  L   + ++ K+++                  + 
Sbjct: 127 RLYVEMVR-AGEVGGVLDRVLLRVASQLEKDQELRRKIKSALAYPAVVLVAAVLAAAFML 185

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
             +          +  D  G + L    A 
Sbjct: 186 IFIVPI----FARMFEDLGGTLPLPTRIAM 211


>gi|260775491|ref|ZP_05884388.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608672|gb|EEX34837.1| type 4 fimbrial assembly protein PilC [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 378

 Score = 40.4 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 17/157 (10%)

Query: 1   MKHLIKKR-TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIET 58
           MKH IK     +F   +          + +GL ++ ++ +I   +    ++S    + + 
Sbjct: 31  MKHRIKASDITRFTRQW-------STMLMSGLNITTSLKLIAKNTHCAEMKSVLWLIQQQ 83

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G S+S+S+ +  RY        +  ++ V  Q G  LSE+L  ++      + +KAK
Sbjct: 84  LQSGQSVSQSLKQSSRYFDC----LYLDIVRVGEQTG-RLSESLERIASYREKSEQLKAK 138

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V  L      S  ++ +L      L     P + ++ 
Sbjct: 139 V--LRAAIYPSIVVMTALIVAFLMLTQVI-PEFESMF 172


>gi|256027601|ref|ZP_05441435.1| general secretion pathway protein F [Fusobacterium sp. D11]
 gi|289765560|ref|ZP_06524938.1| general secretion pathway protein F [Fusobacterium sp. D11]
 gi|289717115|gb|EFD81127.1| general secretion pathway protein F [Fusobacterium sp. D11]
          Length = 346

 Score = 40.4 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  +   +   +++ +    G S+ E+     +      +
Sbjct: 15  LAIMLKSGLTFTAAIEIILREEKEKNFKEVLKKIHKNLIAGKSIFETFKNFDKIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++SR L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSITERLEDISRSLE--FDLANQKKLGGILV-YPIVVISLTLIIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|121593228|ref|YP_985124.1| type II secretion system protein [Acidovorax sp. JS42]
 gi|120605308|gb|ABM41048.1| type II secretion system protein [Acidovorax sp. JS42]
          Length = 405

 Score = 40.4 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++   +++P V      +      G SL+ +  +     P+   
Sbjct: 75  MATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRK----YPMY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPISVIIVAFVVVTIIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +A +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWL 227


>gi|34762869|ref|ZP_00143853.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887477|gb|EAA24563.1| General secretion pathway protein F [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 346

 Score = 40.4 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  D   +   +++ +    G S+ ES     R      +
Sbjct: 15  LAIMLKSGLTFTTAIEIILKEEKDKNFKEVLKKIHKNLIAGKSIFESFKNFDRIFGNTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      ++ G+++E L ++S+ L    ++  + +   +       +I      V+
Sbjct: 75  YMLKIG-----EVSGSIAERLEDISKSLE--FDLANQKKLGGILV-YPIVVISLTFTIVT 126

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ F  P ++ +   +     L+     F+
Sbjct: 127 FLLTFILPNFITIFEENQVELPLITRILLFI 157


>gi|319795465|ref|YP_004157105.1| type II secretion system f domain [Variovorax paradoxus EPS]
 gi|315597928|gb|ADU38994.1| Type II secretion system F domain [Variovorax paradoxus EPS]
          Length = 410

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++    ++  V      +      G SLS +  +  +Y      
Sbjct: 80  LATMMKAGVPLLQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKY-----F 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L + L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 135 DNLYCNLVEAGEAAGILEDLLDRLATYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIM 194

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +A +   +    +
Sbjct: 195 IFVIPVFKEVFTSFGADLPAPTLFVMAMSEFFVSYWWL 232


>gi|291612967|ref|YP_003523124.1| general secretion pathway protein F [Sideroxydans lithotrophicus
           ES-1]
 gi|291583079|gb|ADE10737.1| general secretion pathway protein F [Sideroxydans lithotrophicus
           ES-1]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      + AGLP+  A+AV++ Q  +P +R     +      G +L+ ++ +      
Sbjct: 73  MLRQFATLLEAGLPLEQALAVLIEQGDNPAMRQVLATMRSEVLAGNTLARAMEK--HRDT 130

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             E+      +    +  G L+  +  L+     ++ ++ K+
Sbjct: 131 FPEIH---RALINAGEESGELATVMDRLATYSEGQQALQQKI 169


>gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM
           45100]
          Length = 377

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 10/191 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++    +R  +   +F   +  + R  +AG    DAV        D  + +   +++   
Sbjct: 26  LRDKRTRRKIELEREF---IGAVSRESQAGARPEDAVLAAAQFVDDEAIANGALQLVARY 82

Query: 60  HLGLSLS-ESISRMVR-----YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            L +    +  +             + + +F  +  + ++ G  LS      +  +    
Sbjct: 83  RLSIQGDKDVAADAGEGAEHGSSTQRNLGYFCQLWGIATERGIPLSVLAEAYACDIDAAL 142

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
             + K ++    A+ +  ++ +LP     L      G     + +P G +L+ V +    
Sbjct: 143 ERREKYESAMAGARLTVTVLLALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGC 202

Query: 174 IGIMVMRLMIN 184
            G+     +  
Sbjct: 203 AGVQWTEFLTR 213


>gi|283851908|ref|ZP_06369184.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283572632|gb|EFC20616.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 405

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GL +S ++A++  QS     R     + E    G + SE+++   R     E 
Sbjct: 75  LASLLGSGLTLSRSLALLARQSEAKRARGVIDALGEKLRSGATFSEALAAFPR-----EF 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG + EA   L+ I    + + AK +         A++  ++   V 
Sbjct: 130 DALYVAMIRAGEAGGRMEEAAERLAGIREASEEIAAKFK---SALIYPAFMFLAMSGAVI 186

Query: 142 TLVYFTSPGY 151
            LV F  P +
Sbjct: 187 VLVTFVVPRF 196


>gi|298528955|ref|ZP_07016358.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510391|gb|EFI34294.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 401

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F   F          + AG+P+  A+ V+  Q+ +  +R +   V      G SL +S+ 
Sbjct: 67  FSRQF-------ATLINAGVPILQALQVMCDQTENKILRRKLYEVKNDIEGGSSLYDSLK 119

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +              T +    + GG L   L  L+R +     +KA+V+          
Sbjct: 120 KHPDV-----FDDLYTNMVDAGEAGGVLDLVLDRLARYIEKAARLKARVK---SALIYPG 171

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            II      ++ ++ F  P     +  D  G
Sbjct: 172 VIITVAVAVIAIILIFVIPT-FEDMFADFGG 201


>gi|138896194|ref|YP_001126647.1| PilC II secretion system protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267707|gb|ABO67902.1| PilC, bacterial type II secretion system protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 403

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      VRAG+ + D+V ++  Q+    +      + ++   G  LS + +R  R  P
Sbjct: 68  FLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA------- 130
                 F  ++    +  G L E L  L+         + K+ +      A A       
Sbjct: 128 S----LFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAIIATAVV 182

Query: 131 --WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++  +P  V     F +  P     ++           A   +++G+ V+
Sbjct: 183 IFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVL 235


>gi|83592054|ref|YP_425806.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC
           11170]
 gi|83574968|gb|ABC21519.1| Mg2+ transporter protein, CorA-like [Rhodospirillum rubrum ATCC
           11170]
          Length = 346

 Score = 40.4 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           Q+       ++  ++   +L ++L   + +LRDR   +A+ +      K +      LP 
Sbjct: 241 QDREILGAALATFTRYVEDL-DSLREQAALLRDRIQQRAQQRINRSIYKMTLLAGIFLPL 299

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
              T +   + G M      P G  +L      + IG  +
Sbjct: 300 TFFTGLLGVNLGGMPGA-QSPFGFWILVGLLVALAIGEFL 338


>gi|320197443|gb|EFW72057.1| Type IV fimbrial assembly protein PilC [Escherichia coli WV_060327]
          Length = 400

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|229524709|ref|ZP_04414114.1| general secretion pathway protein F [Vibrio cholerae bv. albensis
           VL426]
 gi|229338290|gb|EEO03307.1| general secretion pathway protein F [Vibrio cholerae bv. albensis
           VL426]
          Length = 406

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 75  LSTLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
             + 
Sbjct: 186 AFLL 189


>gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1]
 gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2]
 gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1]
 gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2]
          Length = 399

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ + +A+ ++  Q+       FR+VI    L +   +S++   R   +
Sbjct: 65  FCRQLSIMISAGIRIKEALNILARQTV--FSKRFRKVILEIALSVETGDSLAEAFRKTGV 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    + GG L   L   +      K ++ +V++         +++     
Sbjct: 123 --FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMA---YPLFVLFFAVV 177

Query: 139 CVSTLVYFTSPGYMNVL 155
            V  + ++  P  +   
Sbjct: 178 IVLVISFYILPNLVRAF 194


>gi|222109982|ref|YP_002552246.1| type II secretion system protein [Acidovorax ebreus TPSY]
 gi|221729426|gb|ACM32246.1| type II secretion system protein [Acidovorax ebreus TPSY]
          Length = 405

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++   +++P V      +      G SL+ +  +     P+   
Sbjct: 75  MATMMKAGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRK----YPMY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPISVIIVAFVVVTIIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +A +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWL 227


>gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila
           RKU-10]
 gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila
           RKU-10]
          Length = 399

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ + +A+ ++  Q+       FR+VI    L +   +S++   R   +
Sbjct: 65  FCRQLSIMISAGIRIKEALNILARQTV--FSKRFRKVILEIALSVETGDSLAEAFRKTGV 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    + GG L   L   +      K ++ +V++         +++     
Sbjct: 123 --FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSAMA---YPLFVLFFAVV 177

Query: 139 CVSTLVYFTSPGYMNVL 155
            V  + ++  P  +   
Sbjct: 178 IVLVISFYILPNLVRAF 194


>gi|166363152|ref|YP_001655425.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
 gi|166085525|dbj|BAG00233.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
          Length = 404

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + AG+ +   + V+  Q  +  ++   + +      G  LSE++++        E+ 
Sbjct: 74  SVMINAGVAIVRCLGVLGDQCGNLKMKKALQAISAEVQQGTPLSEAMAKHPE--CFDELY 131

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    + GG L E L  LS++L D   +K ++++      A   +   + F ++ 
Sbjct: 132 ---VSMVEAGETGGVLDEVLNRLSKLLEDMARLKNQIKSAMTYPVAVGILAVIVFFGMTI 188

Query: 143 LVYFTSPGYMNVL 155
            +          L
Sbjct: 189 FLIPVFAKIFTDL 201


>gi|254785262|ref|YP_003072690.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
 gi|237684077|gb|ACR11341.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
          Length = 409

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            +AG+P++  +  +         R     V E    G+SLS ++ +  +         F 
Sbjct: 80  TKAGIPLTRGIRGLAASVRHEHFREVLNDVAEKLETGMSLSRAMRQHPKVFDS----LFV 135

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           ++I+V  +  G L E    +   L   +  + +V+      +  ++++ +L      +  
Sbjct: 136 SMINV-GESSGKLDEIFRQIGFYLERDEETRKRVK---SAMRYPSFVVVALVIAFVVINI 191

Query: 146 FTSPGYMNVL 155
           +  P +  + 
Sbjct: 192 YVIPPFAKMF 201


>gi|196250150|ref|ZP_03148844.1| type II secretion system protein [Geobacillus sp. G11MC16]
 gi|196210334|gb|EDY05099.1| type II secretion system protein [Geobacillus sp. G11MC16]
          Length = 403

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      VRAG+ + D+V ++  Q+    +      + ++   G  LS + +R  R  P
Sbjct: 68  FLRQFATLVRAGVTIVDSVHILAEQTESKSLARALSDIEQSLRGGNPLSTAAARHPRLFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA------- 130
                 F  ++    +  G L E L  L+         + K+ +      A A       
Sbjct: 128 S----LFVNMVR-AGEASGTLDETLDRLADHFEKMHRTRQKIVSALAYPIAIAIIATAVV 182

Query: 131 --WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++  +P  V     F +  P     ++           A   +++G+ V+
Sbjct: 183 IFLLVAVVPAFVEMFADFHAELPAITKFVLKTSDVMQHYWWAMVLLIMGVYVL 235


>gi|83858598|ref|ZP_00952120.1| General secretion pathway protein F [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853421|gb|EAP91273.1| General secretion pathway protein F [Oceanicaulis alexandrii
           HTCC2633]
          Length = 399

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           ++ L   R  +      + +D +    +AG+P+  A+ V+ G++  P V    R + +  
Sbjct: 49  LRFLDSARPGRLE--LADFMDDLAALHKAGVPLRRALDVLSGEAVTPRVARLARLMADRL 106

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  LS +       +        +  ++   +L G L   L   +++LR +     ++
Sbjct: 107 DAGAELSAA-----ARVDDANDIQLAAELAKAGELSGELELTLRAGAKVLRSQAEFVKRL 161

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           ++        ++++    F V  L     P    +L     G  
Sbjct: 162 RSAMA---YPSFLLVLSLFAVIALSLVAGPALEPLLAETTNGKA 202


>gi|326331491|ref|ZP_08197781.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325950747|gb|EGD42797.1| putative integral membrane protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 300

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 10/158 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60
            KK   +F       ++++      G  V  ++       +      F R+ E       
Sbjct: 149 AKKARLEFTRALGAYIEMVALERNTGSGVRQSMEAAANVCT---SWVFTRLSEELTRSRW 205

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL   +++  +   + L E+  F+ ++ +  + G ++   L   S  +R         +
Sbjct: 206 SGLPPWDALHALGVELGLPELDDFADIMRLSGEEGASVYATLRARSNAMRTAMLNDELTE 265

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           A +   + S   I S    V  +    +P  + +++  
Sbjct: 266 ANATGERMS---IPSSLLGVVFMGLLLAPALLRMVMPT 300


>gi|323935156|gb|EGB31523.1| bacterial type II secretion system protein F containing protein
           [Escherichia coli E1520]
          Length = 400

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K        +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCVELARQQKAQHQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|110640317|ref|YP_668045.1| type IV pilin biogenesis protein [Escherichia coli 536]
 gi|215485270|ref|YP_002327701.1| type IV pilin biogenesis protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|300984526|ref|ZP_07177018.1| type II secretion system F domain protein [Escherichia coli MS
           200-1]
 gi|312966234|ref|ZP_07780460.1| bacterial type II secretion system F domain protein [Escherichia
           coli 2362-75]
 gi|331645215|ref|ZP_08346326.1| protein transport protein HofC [Escherichia coli M605]
 gi|331661150|ref|ZP_08362082.1| protein transport protein HofC [Escherichia coli TA206]
 gi|110341909|gb|ABG68146.1| bacterial type II secretion system protein F [Escherichia coli 536]
 gi|215263342|emb|CAS07657.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|281177324|dbj|BAI53654.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300306695|gb|EFJ61215.1| type II secretion system F domain protein [Escherichia coli MS
           200-1]
 gi|312289477|gb|EFR17371.1| bacterial type II secretion system F domain protein [Escherichia
           coli 2362-75]
 gi|315299995|gb|EFU59233.1| type II secretion system F domain protein [Escherichia coli MS
           16-3]
 gi|324012267|gb|EGB81486.1| type II secretion system F domain protein [Escherichia coli MS
           60-1]
 gi|330909949|gb|EGH38459.1| type 4 fimbrial assembly protein PilC [Escherichia coli AA86]
 gi|331045972|gb|EGI18091.1| protein transport protein HofC [Escherichia coli M605]
 gi|331052192|gb|EGI24231.1| protein transport protein HofC [Escherichia coli TA206]
          Length = 400

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|116747569|ref|YP_844256.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696633|gb|ABK15821.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 405

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F+  F   +D       AGLP+   + ++  Q  +   S F+R+I+     +    ++S 
Sbjct: 68  FVRQFSTMID-------AGLPLVQCLEILQEQQEN---STFKRIIKKVKKDVEEGATLSD 117

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            +R  P +        +    ++GG L   L  L+  +     +K +V+         A 
Sbjct: 118 AIRKHP-KVFDNLFVNLVAAGEVGGILDVILNRLAAYIEKVAKLKRRVKGAMT---YPAI 173

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           ++      V+ ++ +  P +  +          + +A 
Sbjct: 174 VVTIALLVVAVILIYVIPVFAGLFREAGAKLPAMTLAV 211


>gi|303244718|ref|ZP_07331049.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
 gi|302484932|gb|EFL47865.1| Type II secretion system F domain protein [Methanothermococcus
           okinawensis IH1]
          Length = 384

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 6/170 (3%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESISRMVRYMP 77
           +  ++ S+ +G+ + +A+  I           EF+ +I      G S  ES+ R      
Sbjct: 218 ILHMISSLNSGMSLQEAMKNISENPEYGIASFEFKNIIYDINRGGYSFKESLERAKIRTK 277

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK-NMKAKVQALSMEAKASAWIIGSL 136
           +  +      + + +  GG         + ++R+    + +    +S        +   L
Sbjct: 278 IPLMKKLYAQLIISANKGGAQLLLKNLYNEVIRESISKIDSSKFQISNLGNLVFGVGMIL 337

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
           PF    L         + +IN      LL    A M   +  + + +  +
Sbjct: 338 PFAGMLLSSLQGGMGFSGIINTTN---LLLTKIAPMATIVFTIFIKMKIE 384


>gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
 gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
          Length = 445

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG------QSSDPVRSEFRRVIE-- 57
           KK   +   DFP  + ++   + AGL    AV  I        +  D  +  F +++   
Sbjct: 287 KKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRISQNYQKQRELDDSKKYAFEKMMRME 346

Query: 58  -TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALANLSRILRDRKNM 115
                G+S  E+                S ++      G    +  +    R    ++  
Sbjct: 347 QQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQSFTKGSKEAAMLMEAEEREAFHKRID 406

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +AK +      +    +I  L   +  ++Y
Sbjct: 407 RAKKEGEEASTRLLFPMILLLCQVMLLVMY 436


>gi|306815298|ref|ZP_07449447.1| type IV pilin biogenesis protein [Escherichia coli NC101]
 gi|222031935|emb|CAP74673.1| Protein transport protein hofC [Escherichia coli LF82]
 gi|305850960|gb|EFM51415.1| type IV pilin biogenesis protein [Escherichia coli NC101]
 gi|312944710|gb|ADR25537.1| type IV pilin biogenesis protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324008339|gb|EGB77558.1| type II secretion system F domain protein [Escherichia coli MS
           57-2]
          Length = 400

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPCKQWQALLQSLAHDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|157960241|ref|YP_001500275.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
 gi|157845241|gb|ABV85740.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
          Length = 422

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+++         Q  
Sbjct: 90  IATMLAAGVPLVTTIELLGRGHEKAKMRELLATILAEIQSGIPLSDAL-----RPHRQYF 144

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L      ++      + +K+K++         A ++       S
Sbjct: 145 DDLYVDLVAAGEHSGSLDTVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 201

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P +  + 
Sbjct: 202 LLLLFVVPQFEEIF 215


>gi|54310532|ref|YP_131552.1| putative general secretion pathway protein F [Photobacterium
           profundum SS9]
 gi|46914975|emb|CAG21750.1| putative general secretion pathway protein F [Photobacterium
           profundum SS9]
          Length = 410

 Score = 40.4 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+ + +  +  Q+  P +R+    V      G +LS+S++           
Sbjct: 79  LATLVQAGMPLEECLKAVGEQNEKPRLRNMLLAVRSRVVEGYTLSDSMAEYPHI-----F 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K+Q   +       +  ++   V+
Sbjct: 134 DQLFRAMVAAGEKSGHLDTVLNRLADYTENRQKMRSKLQQAMIYPTMLTLVAVAV---VA 190

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P  ++  +    G  L  +    +     V
Sbjct: 191 FLLATVVPKIVDQFVQ--MGQKLPTITEVLLAASNFV 225


>gi|302383559|ref|YP_003819382.1| type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194187|gb|ADL01759.1| Type II secretion system F domain protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 407

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 33  VSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91
           + +A+ +   Q+   P+      V      G S + +++R  +  P  E    S      
Sbjct: 86  IEEALRIAAQQTEGQPIGVVLTDVRAAILEGRSFASALARHPKVFP--EFYRASIA---A 140

Query: 92  SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            +  G L+  LA+L+  + +++  + KVQ   +     A +   +   ++ ++ +  P  
Sbjct: 141 GEQSGKLATVLAHLTEFVGNQEKARRKVQLALLYPALLAVVSLLM---ITLMMVYVVPDI 197

Query: 152 MNVLIN-----DPRGHMLLGVAAAFMLIGIMVM 179
           + V ++           L+ ++A     G+ V+
Sbjct: 198 VKVFVSRGAELPFLTRALIALSAFVQAFGLYVL 230


>gi|307719946|ref|YP_003891086.1| Type II secretion system F domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978039|gb|ADN08074.1| Type II secretion system F domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 402

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +++GLP+ + +  +  +S +   R     +    + G SLS +          +      
Sbjct: 75  IKSGLPLYEGLQELAKESDNKRFRDMMLYIANAINNGQSLSTAF---------EAYKNVI 125

Query: 86  TVISVQS----QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             I +      +  G L   L   +  L+    +K K +   +    +   +  L   + 
Sbjct: 126 GTIILNLIKIGEETGQLEVTLKRAAEFLKRTITLKKKAKGALIYPTFA--FVAVLGAMLV 183

Query: 142 TLVYFTSPGYMNVLINDPRGHML--LGVAAAFMLIGIMVMRLMINF 185
            ++Y   P  +++  +         LG+ A    +    M ++ + 
Sbjct: 184 WMIYVL-PQMLDLFKSMDIKLPALTLGIIAVSNFLSAYWMYMIASI 228


>gi|332284399|ref|YP_004416310.1| general secretion pathway protein F [Pusillimonas sp. T7-7]
 gi|330428352|gb|AEC19686.1| general secretion pathway protein F [Pusillimonas sp. T7-7]
          Length = 402

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL +  A++  + Q+    V      V      G  L E+++        ++ 
Sbjct: 72  LASLLAAGLTLETALSATLDQAERQHVAHALAAVRADIRAGHRLGEALA-----ARPRDF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+LS+ +  L+  +  R  ++ K+    +     + +   +   + 
Sbjct: 127 PPIYRALIDAGEQSGDLSQVMEKLADYIESRGALRNKILTAFIYPIIVSVVSIGIIIFLL 186

Query: 142 TLV 144
           + V
Sbjct: 187 SYV 189


>gi|303239211|ref|ZP_07325740.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302593256|gb|EFL62975.1| Type II secretion system F domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 404

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          ++AG+P++  + V+  Q+++  +R     + E    G+SLS S+ 
Sbjct: 69  FNRQF-------AIVLQAGVPIASCMDVLKQQTTNQTLRECLNDIYENIQKGISLSNSMR 121

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +     P          +    ++ G L      L++   ++  + AK+++         
Sbjct: 122 KHEDIFPE-----IMICMVEAGEVSGQLDIVFERLAKQFENQNAINAKIRSALT---YPI 173

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHML-LGVAAAFMLIGIMV 178
            +       +  L+ F  P ++ +L   N P      + +A +   +    
Sbjct: 174 IVGVIAVAVIVVLMIFVVPSFVGILKDFNTPLPIYTKILIAVSNFFVNFWW 224


>gi|89899355|ref|YP_521826.1| general secretion pathway protein F [Rhodoferax ferrireducens T118]
 gi|89344092|gb|ABD68295.1| General secretion pathway protein F [Rhodoferax ferrireducens T118]
          Length = 411

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 13/151 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI---ETQHLGLSLSESISRMVRYMPLQ 79
           +   V +GLP+  A+  +  ++     +E   V       + G + ++++S+  R     
Sbjct: 81  LAGLVSSGLPLERALTSLSDEAERD--NEHHLVALLRAEVNGGATFAKALSQHPR----- 133

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           E +     +    +  GNL   L  L+  L +++ +KAK+      A   A +       
Sbjct: 134 EFTPIFIAVIGAGEQSGNLGLVLERLADDLEEQQALKAKLIG---AALYPAIVSLVAVVI 190

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           V  LV +  P   +V     R   LL V   
Sbjct: 191 VLFLVTYVVPQVAHVFAGSKRALPLLTVIMI 221


>gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
 gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
          Length = 261

 Score = 40.4 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 10/185 (5%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR--RVIET 58
           MK    +R  +      + +        A L   + +  +  +   P+  E    +    
Sbjct: 74  MKMRENRRKERLRQVAKDIIVAAGGMFSANLMTGEVIKTLAERIPAPLGRELADIKARRE 133

Query: 59  QHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +   +  + ++ +     L E+         + ++      ++ L  L   LR R  + 
Sbjct: 134 LNSYNTYPQLLNGLAEKYDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGAALRLRDRLI 193

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML-IG 175
            + +  + E++ +A ++  +                        G ++L  A+A +  +G
Sbjct: 194 QERKVATYESRLAAVVVIMILAAGLLFDATAWREAY-----TGSGKLILVAASALITGMG 248

Query: 176 IMVMR 180
           + V++
Sbjct: 249 LFVVK 253


>gi|294791163|ref|ZP_06756320.1| putative bacterial type II secretion system protein F domain
           protein [Scardovia inopinata F0304]
 gi|294457634|gb|EFG25988.1| putative bacterial type II secretion system protein F domain
           protein [Scardovia inopinata F0304]
          Length = 190

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 12/145 (8%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI---SRMVRYM 76
           L+++  ++R G  V  A   +       + S   ++ ++ + G S  ++      +    
Sbjct: 49  LEMMTVAIRQGASVPRACEAVGMAMKTDLGSCLCQISQSLYRGASWEDAWGLSRSLPSQT 108

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             Q        +    + G   +  +  +   + +   ++++       +K S  ++  L
Sbjct: 109 DRQTCDLLEQTLEPSWRHG---ASPIIRIETAIEEENRLRSR-AMDDAASKLSVKVLLPL 164

Query: 137 PFCVS--TLVYFTSP---GYMNVLI 156
             C     ++    P   G++  + 
Sbjct: 165 GLCFLPAFVILTVIPSLAGWIETMW 189


>gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 294

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQH 60
             I+ R               V  +R  +P+ +A+  I   ++   R++F R  V   Q 
Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIARDAAAQ-RTDFGRRFVARMQE 187

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MK 116
             +  L +++  +     + E++ F   I        G+L++ L    R    + +  + 
Sbjct: 188 ARVRPLGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVD 247

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+  A+ ++ +  + ++       +    F
Sbjct: 248 AEKNAMQLKLRMMSVVMFVYILGWAGYFAF 277


>gi|312110052|ref|YP_003988368.1| type II secretion system protein F [Geobacillus sp. Y4.1MC1]
 gi|311215153|gb|ADP73757.1| Type II secretion system F domain protein [Geobacillus sp. Y4.1MC1]
          Length = 403

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      ++AG+ + D+  ++  Q+    ++     V E+   G  LS + ++
Sbjct: 62  LQDFVIFLRQFATLIKAGVSIVDSTRILASQTESKALKKALMEVEESLRAGNPLSAAAAK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             R  P      F  ++    + GGN+ E L  L+         + K+
Sbjct: 122 HPRIFPT----MFVNMVK-AGEAGGNMDETLERLADHFEKMHRTRQKI 164


>gi|77917747|ref|YP_355562.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
 gi|77543830|gb|ABA87392.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
          Length = 401

 Score = 40.4 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRM 72
             F      ++  +R+GLP+   +   + +    P++   ++V E    G SLS +  + 
Sbjct: 63  RQFLTFNQEMLVLLRSGLPMLQVLDATLERLDAGPLQRSVQQVREAVKGGASLSSAFGQF 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS-MEAKASAW 131
            RY P               +  G+L+  +       +    +K KV+  +   A     
Sbjct: 123 PRYFPY-----LYLAALQAGEQTGDLAVTIQRYVNYQKRIGQVKNKVKMAAFYPAMLCLA 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            IG L F V  +V   +  + +  ++ P    LL   A  +    + +  ++
Sbjct: 178 AIGILVFMVLFVVPRFAEIFRDAKLDLPWVTRLLITLADLLTGHFLWLVPIV 229


>gi|295399389|ref|ZP_06809371.1| Type II secretion system F domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978855|gb|EFG54451.1| Type II secretion system F domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 417

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      ++AG+ + D+  ++  Q+    ++     V E+   G  LS + ++
Sbjct: 76  LQDFVIFLRQFATLIKAGVSIVDSTRILAEQTESKALKKALMEVEESLRAGNPLSAAAAK 135

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             R  P    + F  ++    + GGN+ E L  L+         + K+
Sbjct: 136 HPRIFP----AMFVNMVK-AGEAGGNMDETLERLADHFEKMHRTRQKI 178


>gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 243

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           +++   + AG+PVS AV     Q   P     RRV     LG   +E+
Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDGPSGRALRRVAGLLELGADPAEA 154


>gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
 gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa
           39016]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|224823845|ref|ZP_03696954.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224604300|gb|EEG10474.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 408

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 14/185 (7%)

Query: 5   IKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           +KKR A F     +         +   ++AG+P+  +  +     S+P V      V   
Sbjct: 54  LKKRKAGFGKRITDRDITLFTRQLATMMKAGVPLLQSFDISAKGHSNPAVTKMLLEVRAD 113

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G+SL+E+     +     +   F  +I+   + GG L   L  L+        +K K
Sbjct: 114 VETGMSLAEAFR---KRPLYFD-KLFCNLIA-AGETGGVLDSLLDKLATYREKIMAIKGK 168

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           ++  S     SA I  +       ++Y   P + ++  +         +   ++    + 
Sbjct: 169 IK--SAMIYPSAIIATAFIITTIIMLYVI-PAFKDLFSSFGADLPAPTLLVIWLSDAFVK 225

Query: 179 MRLMI 183
              ++
Sbjct: 226 FWWLV 230


>gi|254524287|ref|ZP_05136342.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
 gi|219721878|gb|EED40403.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++ ++ Q+  P V      V      G  L+ +++       
Sbjct: 65  ATRQLASLLAASLPLESALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136
            ++       +    +  G+L+  +  L+  + +R  ++AKV    +  A  S   +  +
Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            F +S +V      ++      P    ++  A+AF
Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214


>gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1]
 gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|291295428|ref|YP_003506826.1| type II secretion system protein [Meiothermus ruber DSM 1279]
 gi|290470387|gb|ADD27806.1| type II secretion system protein [Meiothermus ruber DSM 1279]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 16  FPNALDI---IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            P  + +   +   VRAG+P+  A+  +  Q+  P +R   R + E    G  L+ ++  
Sbjct: 57  LPELVILTEQLATMVRAGVPLVQALHTLSLQAGSPSLREALRGLRERIEAGQGLARAMED 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +  P   +           +LGG+L   L  L+  L     ++ K + 
Sbjct: 117 YPQVFP-PLMRHLVAA----GELGGSLEVVLQRLAEYLDKSYELQEKTRT 161


>gi|319956473|ref|YP_004167736.1| type II secretion system f domain protein [Nitratifractor
           salsuginis DSM 16511]
 gi|319418877|gb|ADV45987.1| Type II secretion system F domain protein [Nitratifractor
           salsuginis DSM 16511]
          Length = 416

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 27  VRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           VRAG+PVS+A+   V   + D +R +   V      G+SL+E+  +      L E +   
Sbjct: 290 VRAGIPVSEALQTAVNMVNNDYIREKLETVNANIGRGMSLTEAFEQ----TGLFE-NMLL 344

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            +I    +  G L + L  ++     R           +    S++I   + F ++ LV 
Sbjct: 345 QMIK-AGEASGQLDKMLQKVTDYYNMRFQ--------DIIDNLSSYIEPIMLFFIAGLVL 395

Query: 146 FTSPGYMNVLINDPRGHML 164
             + G    + +   G  +
Sbjct: 396 LMALGIFLPMWD--LGRAV 412


>gi|296121549|ref|YP_003629327.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296013889|gb|ADG67128.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 347

 Score = 40.1 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 23/175 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G+ +  A+ +   ++ D       +R+I+    G  LSE++       P    
Sbjct: 19  LSTLLHSGVALIRALELAGKRAGDQRFGPVTQRLIQEVRSGNGLSEALIAEGSTFP---- 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM----EAKASAWIIGSLP 137
           +    ++SV  Q G NL E L +L+     +  M+    A       +A A+  I+  L 
Sbjct: 75  ALLVDMVSVGEQTG-NLPEVLTSLAGHFDHQVQMRRTFIAAITWPVLQAVAAILIVAILI 133

Query: 138 FCVSTLVYFTSPGYMNVL----------INDPRGHMLLGVAAAFMLIGIMVMRLM 182
             +  +   T    ++VL          +    G  +L VA     IG  ++  M
Sbjct: 134 VVLGIVAQVTGSSPLDVLGVGLTGTTGAVAWLSGWAMLLVAGC---IGWEMINRM 185


>gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 635

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/118 (8%), Positives = 41/118 (34%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++   +     P     +     AGL + +A+ V+       +  E   +      G 
Sbjct: 421 LRERTVRQIEKRIPEIFKELAILNEAGLSIIEALKVLSTIELGVISKEINIIRRRIEWGE 480

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +++++  +   +  + ++    +     +      +A   ++        ++ ++++
Sbjct: 481 PVTKALRLLELRVRSEIIAKVIPISVKALETSPTYKDAFQTVAAFASAEVGLRERIRS 538



 Score = 37.8 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQ 59
             +  +R  +     P+A++++      G+   D +  +         +  EF  +I+  
Sbjct: 133 SFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMIKSVAEAKFMFGELSKEFGTIIQLT 192

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +    L  ++  +    P +++S F   +    + GGNLS  L N S    + + +
Sbjct: 193 DVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIKGGGNLSAFLKNKSDEFFEEQEV 249


>gi|34499282|ref|NP_903497.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34105133|gb|AAQ61489.1| fimbrial assembly transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 14/157 (8%)

Query: 5   IKKRTAKFLDDFPN-----ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           I++R + F               +   +RAG+P+  A  +     S+P V      V   
Sbjct: 53  IRRRRSGFGKKITEKDITLFTRQLSTMMRAGVPLLQAFDIAAKGHSNPAVTRMLLEVRAD 112

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              GLSL+E+     +     +   F  +I+   + GG L   L  L+        +K+K
Sbjct: 113 VETGLSLAEAFR---KRPLYFD-KLFCNIIA-AGEAGGVLDTLLDKLATYKEKVMAIKSK 167

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           ++         + I+G+     + ++ +  P + ++ 
Sbjct: 168 IK---SAMIYPSAIVGTAFIITAVIMIYVIPAFKDLF 201


>gi|220931443|ref|YP_002508351.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
 gi|219992753|gb|ACL69356.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
          Length = 401

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          + AG+ + +A+ ++  Q   P ++   R + E    G SL++++ 
Sbjct: 68  FTQQF-------SVLLNAGISLVEALDIMYDQVEHPRLKEVVRSIQEDVETGSSLTDALL 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +     P      +  ++    + GG L + L  LS     +  + +KV+          
Sbjct: 121 KHPDVFP----ELYCQMVK-AGEAGGVLDQVLEQLSAHYERQDEINSKVK---SAMYYPV 172

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++      V  L+    P ++++ 
Sbjct: 173 ILLVVAVGVVIFLMTRVVPQFISLF 197


>gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 404

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           +R  K   D       +   + AGLP+  A+ ++  Q+ +  +R     ++ +   G + 
Sbjct: 58  RRVGK--QDLAVFCRQLATMLGAGLPIVPALQILAMQAENKILRRNIEEIVRSLEGGETF 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            E+++R+  + P+         I   ++LGG+L EAL  L+  L     ++ KV++
Sbjct: 116 HEALARLQVFPPI-----MVHAIE-AAELGGSLDEALEELAAHLEREHELQEKVKS 165


>gi|77919283|ref|YP_357098.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
 gi|77545366|gb|ABA88928.1| type II secretory pathway, component PulF [Pelobacter carbinolicus
           DSM 2380]
          Length = 402

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 23  IVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  +++G+P+   +A ++  Q S   ++    V  +   G SLSE+ +    Y P    
Sbjct: 72  MLVLLKSGMPILQILASLVHDQDSANTKNVLTEVFTSVKGGRSLSEAFAGFPEYFP---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +   ++   +  G+L + L   +R L  +K M      L   A     ++ +    + 
Sbjct: 128 GLYVASVA-SGEKTGDLPQTL---ARYLGYQKRMAQVKDRLKSAALYPLVLVAATILVLL 183

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLG---------VAAAFMLIGIMVMRLMINFD 186
            +V+F  P ++ +  +       L           A  + ++ ++VM  M+   
Sbjct: 184 FMVFFVIPSFVQIYADAQVSLPFLTRFVLGLADLAARGWFVVLVLVMSGMVALR 237


>gi|218782977|ref|YP_002434295.1| general secretion pathway protein F [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764361|gb|ACL06827.1| General secretion pathway protein F [Desulfatibacillum alkenivorans
           AK-01]
          Length = 408

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AGLP+  A+  ++ QS  P ++     V +    G SL++++S   +       
Sbjct: 78  LSTLVGAGLPIVSALESLIPQSPHPVLQKVLAHVKDDIVEGKSLADALSSHPKV-----F 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G +   LA LS +    +N K K++A          ++      ++
Sbjct: 133 SPLYVNMVRAGEASGAMEIVLARLSDLTERNENTKGKIRAALA---YPVIMVLVAIVVLT 189

Query: 142 TLVYFTSPGYMNVL 155
            L+    P  +++ 
Sbjct: 190 ALMVKVVPSIVSLF 203


>gi|169838373|ref|ZP_02871561.1| type IV pilus assembly protein [candidate division TM7 single-cell
           isolate TM7a]
          Length = 245

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 16/149 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           +++ +   + F              + AG+P++ ++  +   + +PV R     V     
Sbjct: 61  RNVKQDELSIFTRQL-------STMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVE 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+SL++++ +  +       S     +    +  G L E L  L+        ++ K++
Sbjct: 114 SGVSLADALGKHPKV-----FSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIK 168

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
                      ++         L+ F  P
Sbjct: 169 ---SAMTYPVVLVVISVLAFFGLMIFVIP 194


>gi|74318387|ref|YP_316127.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057882|gb|AAZ98322.1| type IV pilus assembly protein PilC [Thiobacillus denitrificans
           ATCC 25259]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 60/177 (33%), Gaps = 11/177 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K + +K  A F              ++AG+P+  +  ++    S+P     +R++     
Sbjct: 62  KRITEKDVALFTRQL-------ATMMKAGVPLLQSFEIVARGHSNP---SMQRLLMEIKA 111

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +    S+++     PL   + F  ++    +  G L   L  L+        +K K+++
Sbjct: 112 DIEKGSSLTQSFARHPLYFDALFCNLVG-AGEAAGILEAVLDRLAVYKEKILAIKGKIKS 170

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 +   +   +   +   V        +    D  G  L+ +A +   +    
Sbjct: 171 ALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWW 227


>gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + S  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLISALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|256842813|ref|ZP_05548301.1| competence protein [Lactobacillus crispatus 125-2-CHN]
 gi|256614233|gb|EEU19434.1| competence protein [Lactobacillus crispatus 125-2-CHN]
          Length = 333

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           MK++   +  K    +     LD +  S+  G  + +++ ++        R    R+  +
Sbjct: 1   MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASS 58

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115
              G S S  + ++           FS     Q       GNL E L +L+ + R ++  
Sbjct: 59  MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             K++    E      +   +   +  +  F S  + +   +D  G M++      +L+G
Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163

Query: 176 IMVMRLMINF 185
           +     ++  
Sbjct: 164 LYFFAKIVTL 173


>gi|209696320|ref|YP_002264251.1| general secretion pathway protein F [Aliivibrio salmonicida
           LFI1238]
 gi|208010274|emb|CAQ80606.1| general secretion pathway protein F [Aliivibrio salmonicida
           LFI1238]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+ + +  +  Q   P +RS    V      G  L+ES             
Sbjct: 75  LATLVQAGMPLEECLKAVAEQGEKPHIRSMMMGVRSKVIEGYPLAESFGGYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q   +       I  ++   +S
Sbjct: 131 DLFCSMVA-AGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPIMLTLIAVAV---IS 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            L+    P  ++  +   +G   +     
Sbjct: 187 FLLATVVPKIVDQFVQMGQGLPAVTEILI 215


>gi|167957546|ref|ZP_02544620.1| pilin biogenesis protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 404

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 12/167 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+S ++  +  Q+++  ++   + +I     G SLS+S ++          
Sbjct: 72  LATLIGAGLPLSQSLRTVQEQTTNKRMQEIVQEIISDVEGGKSLSDSFAKHPE-----AF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G + E+L  L+        M +K++   M     + ++  +   V 
Sbjct: 127 NKVYVALVAAGETSGTMDESLKRLAAQQEKDAAMMSKIRGAMM---YPSIVLAVIILVVG 183

Query: 142 TLVYFTSP---GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
            +++   P   G    L        L+ +  A   I    + L+I  
Sbjct: 184 FMLFTVVPQVEGLYRDLNKGLPFITLIMINVANFFIHFWWLALLIMI 230


>gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
 gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|296109004|ref|YP_003615953.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
 gi|295433818|gb|ADG12989.1| Type II secretion system F domain protein [Methanocaldococcus
           infernus ME]
          Length = 345

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 56/162 (34%), Gaps = 4/162 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L  +   ++AG  + + +  +        +  E   +I   + G++  +++ R +    +
Sbjct: 180 LLYMTSLLKAGASLPEILTGLARSREYGVLSYEAALIIRDINSGMTFEDALRRAIIRTTI 239

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRK-NMKAKVQALSMEAKASAWIIGSL 136
             +      + +    G NLS  L  L   + R+    +      +      +  +   +
Sbjct: 240 PLLRKVFDQMIIGYNKG-NLSLLLEKLYEEIVRESLSKLDTSKFMIQNLGNLAFGVGLIM 298

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           PF    +    S    + ++N     ML       ++ G+ V
Sbjct: 299 PFSGLIMSAMISNQGFSGILNAVNFLMLNLGPILAIIFGVFV 340


>gi|220933966|ref|YP_002512865.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995276|gb|ACL71878.1| type IV pilin biogenesis protein PilC [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 403

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMP 77
            L  +   + AG+P+  A  ++     +P   E    ++     G + S ++ +  +Y  
Sbjct: 69  FLRQMATMMEAGVPLVQAFDIVGRGHENPSMQELILAMKSDVEGGTTFSAALGKHPKY-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G L   L  ++      +++KAK++        +A ++ +  
Sbjct: 127 ---FDDLVVNLVNAGEQAGALETLLDKIATYKEKTESLKAKIKKALFYP--TAVLVVAFI 181

Query: 138 FCVSTLVYFTSPGYMNVL 155
                L++   P + ++ 
Sbjct: 182 VTAILLIFVV-PQFQDLF 198



 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     AG+P+ +A+  + G + + +  E   R+ +    G  L  ++       P    
Sbjct: 277 LSTMFAAGVPLVEAMESVAGATGNALYREATLRIRDETAAGTQLQAAMRNTA-LFP---- 331

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +    ++++  + G  L + L  ++    +  +        S+ +     I+  L   V 
Sbjct: 332 NMVVQMVAIGEESGA-LDDMLDKVADFYEEEVD----NMVDSLSSLMEPMIMAFLGVVVG 386

Query: 142 TLVYFT 147
            LV   
Sbjct: 387 GLVIAM 392


>gi|28896909|ref|NP_796514.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839995|ref|ZP_01992662.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ3810]
 gi|260365904|ref|ZP_05778398.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030]
 gi|260877809|ref|ZP_05890164.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AN-5034]
 gi|260895542|ref|ZP_05904038.1| general secretion pathway protein F [Vibrio parahaemolyticus
           Peru-466]
 gi|260902566|ref|ZP_05910961.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ4037]
 gi|28805117|dbj|BAC58398.1| general secretion pathway protein F [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746472|gb|EDM57475.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ3810]
 gi|308088542|gb|EFO38237.1| general secretion pathway protein F [Vibrio parahaemolyticus
           Peru-466]
 gi|308089749|gb|EFO39444.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AN-5034]
 gi|308109718|gb|EFO47258.1| general secretion pathway protein F [Vibrio parahaemolyticus
           AQ4037]
 gi|308113481|gb|EFO51021.1| general secretion pathway protein F [Vibrio parahaemolyticus K5030]
 gi|328471684|gb|EGF42561.1| general secretion pathway protein F [Vibrio parahaemolyticus 10329]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +R+    V      G  L++S+            
Sbjct: 74  LSTLVQSGMPLEECLRAVSEQAEKPRIRTMIAAVRSKVTEGYPLADSLGDYPHVFD---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+  + +R+ M++K+    ++A     ++      + 
Sbjct: 130 ELFRSMVA-AGEKSGHLDTVLERLAEYVENRQKMRSKL----LQAMIYPVVLVVFAVAIV 184

Query: 142 TLVYFT 147
           + +  T
Sbjct: 185 SFLLAT 190


>gi|222478656|ref|YP_002564893.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451558|gb|ACM55823.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 664

 Score = 40.1 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIET 58
           ++ L   R        P A+  +   + AG      +        +     +  R+ +  
Sbjct: 149 LRWLTATRRTDIERTLPPAVRYLE-LLAAGSDGPRKMVEKAAANDAYGGTATSLRKALNA 207

Query: 59  QHLGLSLSESISRMVRYMPLQEVSF-FSTVISVQSQLG-GNLSEALANLSRIL-----RD 111
             L  SL E + R+ R  P +E+   F       +  G   L+E L   SR+L     R 
Sbjct: 208 ARLAGSLDEGLRRVARDTPSRELLAPFLLKFRKHAATGDAALAEYLRTESRMLAHRQDRA 267

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG----HMLLGV 167
           RK  +  ++ L+        +   L    + L     P  +  + + P G      ++  
Sbjct: 268 RKRARRFLELLTELFVVVLVLPALLVIAATALTVVV-PELLPPV-DTPVGVVPTRAVVLY 325

Query: 168 AAAFMLIGI 176
            A   L+ I
Sbjct: 326 GAVVFLVAI 334


>gi|88704112|ref|ZP_01101827.1| general secretory pathway protein F [Congregibacter litoralis KT71]
 gi|88701939|gb|EAQ99043.1| general secretory pathway protein F [Congregibacter litoralis KT71]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +P   E    +      G  L+ S+S+  R+      
Sbjct: 75  MATMMKAGVPLVQSFDIVGDGLENPSMKELVGGIKNDVSAGGGLALSLSKHPRHFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++    +  G L   L  ++      + +KAK++        +A I+ +L     
Sbjct: 131 ELFCSLVG-AGESAGTLETMLDRVATYKEKTEQLKAKIKKALTYP--TAVIVVALVVSGI 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            LV    P +         G  L   A   M++G+
Sbjct: 188 LLVKVV-PQFAETF--SSFGADL--PAFTLMVLGL 217


>gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
 gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
 gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L  +R  K  ++   A+  +   + AG+ ++DAV      +  P + +  + +     
Sbjct: 46  RNLGSRRRLK-AEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLR 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G S    +      +P       +       ++ GNL+ AL + +  +   +  +A++Q
Sbjct: 105 QGQSFPVVLESAGLDLPRYVYQLVA-----AGEMTGNLAGALRDCATQMEYERRTRAELQ 159

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
              +     A ++ S    V+TL  F  P     L+N+      L  A   + +
Sbjct: 160 GALI---YPAILVLSGVLAVATLFVFVVPK-FANLLNETAQLPWLAWAVLSIGV 209


>gi|77919741|ref|YP_357556.1| putative general protein secretion protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77545824|gb|ABA89386.1| putative general protein secretion protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AGL +   + ++  Q  +  ++     V E    G + ++++S
Sbjct: 70  FTRQFATMID-------AGLALVQCLDILGRQQENQVLKKVLVEVKEGVESGSTFADALS 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  +         F   +    ++GG L   L  L+  L   +      + +       A
Sbjct: 123 KHPKIFD----ELFVN-LVAAGEVGGILDTILNRLAAYL---EKAHKLKKKVKGAMTYPA 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM--VMRLMI 183
            ++G     +  ++ F  P     +  D  G + L       +   +   +  +I
Sbjct: 175 TVVGIAVIVIGVILVFVIPA-FEKMFADFGGVLPLPTRIVIAISNFIQSWIFAII 228


>gi|258652939|ref|YP_003202095.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
 gi|258556164|gb|ACV79106.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
          Length = 305

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 52/156 (33%), Gaps = 4/156 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           ++     R  +F       LD+    +      ++A+       +  P       +    
Sbjct: 151 IRREAHGRRVEFRHALGAYLDLTSLEMAGSAAPAEALPTAARVGASWPFLLIRDTLYRAA 210

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S   ++S +   + + E+     +I + +  G  +   LA  ++ +R R+    + 
Sbjct: 211 RGGRSPWVALSDLGSRIGVPELRDLGGMIELVAHDGARVRSTLAARAQTMRRRELADLQG 270

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            A   +       +  +      +++   P +  +L
Sbjct: 271 NAGKADQSMR---LAQILVAFGFIIFIGYPAFAVIL 303


>gi|88801096|ref|ZP_01116643.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
 gi|88776175|gb|EAR07403.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
          Length = 407

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +P +      +      G S   ++ +  +Y      
Sbjct: 77  MATMMKAGVPLMRSFEIVAEGLDNPKMAELVTSMKNNVAGGGSFGSALRQHPKY-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++     ++  +A  + +    K  A ++        
Sbjct: 132 DDLYCSLIESGEQAGALETMLDRVAIY---KEKSEAVKKKVKSAMKYPATVLVVAAIVTI 188

Query: 142 TLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
            L+    P +  +  N          +++ ++++    GI+   +++   +
Sbjct: 189 ILLLKVVPTFAEMFSNFGADLPVPTQIVMNMSSSLQENGIIWGSIILAIAI 239


>gi|312961923|ref|ZP_07776420.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
 gi|311283733|gb|EFQ62317.1| general secretion pathway protein F [Pseudomonas fluorescens WH6]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 63/165 (38%), Gaps = 11/165 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS+++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +   ++ L+ +  P ++ +  +   G  +  +    + +G  +
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIFKD--LGVPIPLITEVILGLGQFL 217


>gi|288814578|gb|ADC54375.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++ ++ Q+  P V      V      G  L+ +++       
Sbjct: 65  ATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136
            ++       +    +  G+L+  +  L+  + +R  ++AKV    +  A  S   +  +
Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            F +S +V      ++      P    ++  A+AF
Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214


>gi|225851038|ref|YP_002731272.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1]
 gi|225646001|gb|ACO04187.1| type IV pilus biogenesis protein PilC [Persephonella marina EX-H1]
          Length = 400

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D       +   + AG+ +++A+ ++  Q  +  +    + V E    G+SL++++ +
Sbjct: 61  EKDLAIFTRQLGAMISAGVGIAEALEILSEQIPNKTLADALKSVKEDVMAGMSLAKAMEK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      F   ++  ++  GNL   L   +        +K K+ + S        
Sbjct: 121 HPKAFPE-----FLVNLTAAAEESGNLDVILKRATVYYEKIAAIKRKLISASWYPAMVVV 175

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           I   +   + T +  T       +
Sbjct: 176 IATVIVLGILTFIVPTFAQLYKGM 199


>gi|318607112|emb|CBY28610.1| type IV fimbrial assembly protein PilC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + +   +R                  ++AGLP+ + + ++  +    P +   + + +  
Sbjct: 53  ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117
             G SLSE+++      P   +      +       G L+  L    +  +L   +  K 
Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172
           + + +    K   ++        + ++    P +  +    + P    +L     FM
Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210


>gi|330866887|gb|EGH01596.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 332

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196


>gi|262189839|ref|ZP_06048173.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
 gi|262034282|gb|EEY52688.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
          Length = 379

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S+            
Sbjct: 48  LATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD---- 103

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+    +R+ M++K+Q    +A     ++      + 
Sbjct: 104 ELFRSMVA-AGEKSGHLDSVLERLADYAENRQKMRSKLQ----QAMIYPVVLVVFAVGIV 158

Query: 142 TLVY 145
             + 
Sbjct: 159 AFLL 162


>gi|332976658|gb|EGK13498.1| pilin secretion/fimbrial assembly system protein [Psychrobacter sp.
           1501(2011)]
          Length = 238

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 19  ALDI------IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           ALDI      +    +AG+P+  ++ +++   + P +     ++  +   G   + ++S+
Sbjct: 66  ALDIAVFARQLATMTKAGVPLLQSLDIVIETLTKPSMIEVVEQLKYSIESGTPFAAALSK 125

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +             +    +  G+L   L  ++      +++K+K++       A   
Sbjct: 126 HPKQ-----FDNLFCALVSAGEYSGSLDIMLERIATYKEKSEHLKSKIKKAIKYPIAVTS 180

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           +   +   +   V        +  
Sbjct: 181 VAIMVSLILLLKVVPVFSELFDSF 204


>gi|269104071|ref|ZP_06156768.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163969|gb|EEZ42465.1| MSHA biogenesis protein MshG [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              +AG+P+  A+  +   +S P+  E    VI     G  LS S+ +    +       
Sbjct: 75  SLTKAGIPLLRAIKGLAQSTSHPLLRETLEAVIADLTNGSPLSVSMKQHP-RVFTP---L 130

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
           F ++I+V  +  G L  +L  L+         + ++       +   +++ S+   +  L
Sbjct: 131 FVSMINV-GENTGRLDSSLLQLANYYEQEMETRRQIA---SAMRYPMFVLTSIGLAMVVL 186

Query: 144 VYFTSPGYMNVL 155
                P + ++ 
Sbjct: 187 NIKVIPQFASMF 198


>gi|294787152|ref|ZP_06752405.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294484508|gb|EFG32143.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 269

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 12/171 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRV-IETQHLGLSLSESISRMV 73
           + +  ++  +  G  + DA   + G      +      + V       G S    ++R+ 
Sbjct: 47  DFIAELISLLHNGSGMVDACQEMGGMVFAIPELTDDRMKAVLARRCGHGRSDRAYLTRLA 106

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R               + + LG + S+ L  +    +    +  K ++     + +  ++
Sbjct: 107 RQ--------LVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSALSIPRLTVKVL 158

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             LP  V      TS     VL   P G + L +AA    +G+  ++ ++ 
Sbjct: 159 LILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLLR 209


>gi|152985681|ref|YP_001350164.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150960839|gb|ABR82864.1| general secretion pathway protein F [Pseudomonas aeruginosa PA7]
          Length = 404

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   R   
Sbjct: 70  ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALA--ARPRD 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             E+      +    +  G+L++ +  L+  + +R  ++ K+
Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166


>gi|83749454|ref|ZP_00946446.1| General secretion pathway protein F [Ralstonia solanacearum UW551]
 gi|207738421|ref|YP_002256814.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
 gi|83723891|gb|EAP71077.1| General secretion pathway protein F [Ralstonia solanacearum UW551]
 gi|206591787|emb|CAQ58693.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 391

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AGL V +A+  +  +   P  RS    V+     G  LS +   M    P    + ++
Sbjct: 66  LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 121

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           ++I    +   NL ++L+           ++AK+ + S+     A +  ++   +   V
Sbjct: 122 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 179


>gi|194365986|ref|YP_002028596.1| general secretion pathway protein F [Stenotrophomonas maltophilia
           R551-3]
 gi|194348790|gb|ACF51913.1| general secretion pathway protein F [Stenotrophomonas maltophilia
           R551-3]
          Length = 399

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 60/155 (38%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A+  ++ Q+  P V      V      G  L+ +++       
Sbjct: 65  ATRQLASLLAASLPLEAALTAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136
            ++       +    +  G+L+  +  L+  + +R  ++AKV    +  A  S   +  +
Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            F +S +V      ++      P    ++  A+AF
Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214


>gi|254515229|ref|ZP_05127290.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR5-3]
 gi|219677472|gb|EED33837.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR5-3]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +P   E    +      G  L+ S+S+  R+      
Sbjct: 75  MATMMKAGVPLVQSFDIVGDGLENPSMKELVNGIKNDVSAGGGLALSLSKFPRHFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++    +  G L   L  ++      + +KAK++        +A I+ +L     
Sbjct: 131 ELFCSLVG-AGESAGTLEVMLDRVATYKEKTEQLKAKIKKALTYP--TAVIVVALVVSGI 187

Query: 142 TLVYFT 147
            LV   
Sbjct: 188 LLVKVV 193


>gi|300696695|ref|YP_003747356.1| general secretion pathway protein F [Ralstonia solanacearum
           CFBP2957]
 gi|299073419|emb|CBJ52933.1| General secretion pathway protein F [Ralstonia solanacearum
           CFBP2957]
          Length = 395

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AGL V +A+  +  +   P  RS    V+     G  LS +   M    P    + ++
Sbjct: 70  LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 125

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           ++I    +   NL ++L+           ++AK+ + S+     A +  ++   +   V
Sbjct: 126 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 183


>gi|66044052|ref|YP_233893.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254759|gb|AAY35855.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 405

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++  +M    +  I+  +   + 
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK-AMTYPIAVLIVALIVSGIL 188

Query: 142 TL 143
            +
Sbjct: 189 LI 190


>gi|262200535|ref|YP_003271743.1| type II secretion system F domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262083882|gb|ACY19850.1| Type II secretion system F domain protein [Gordonia bronchialis DSM
           43247]
          Length = 202

 Score = 40.1 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM-VRYMP 77
           A D+    +RAGLPV  A A +   +   +      V +   LG     + S +     P
Sbjct: 56  AFDLFAVCLRAGLPVGTAAATVAASAPASLAGPLTEVADLLGLGADPDTAWSVLTASDTP 115

Query: 78  L----QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI- 132
           +      +   +++    ++ G +L+  LA L+   R + +  A   A       S  + 
Sbjct: 116 VVGAQPHLDALASMARRSARAGSSLAAGLAELADETRRQAHDTATAAAERAGVAISGPLG 175

Query: 133 IGSLPFCVSTLV 144
           +  LP  V   +
Sbjct: 176 LCFLPAFVCLGI 187


>gi|254447703|ref|ZP_05061169.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
 gi|198263046|gb|EDY87325.1| general secretion pathway protein F [gamma proteobacterium
           HTCC5015]
          Length = 383

 Score = 40.1 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
            H + +R  +    +P  +  + +   AG+P+++A+  +  ++         + +     
Sbjct: 47  SHAVSRRQWR--QSWPLVVRQLRQLSAAGVPLAEAMDALSQEAEPVAWAQLLQDLARDLS 104

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            G  LS++++R   ++P       S  +    +  G L   L  L++IL  R+  +++
Sbjct: 105 AGQRLSQALARFEEHLPEP-----SMSLIQAGENSGTLERQLDTLAQILEWREARRSE 157


>gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima
           MSB8]
 gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima
           MSB8]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ + +A+ ++  Q+       FR+VI    L +   +S++   R   +
Sbjct: 65  FCRQLSIMISAGIRIKEALNILARQTV--FSRRFRKVILEIALNVETGDSLAEAFRKTGV 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    + GG L   L   +      K ++ +V++         +++     
Sbjct: 123 --FDNVLISMLEAGEEGGVLDRTLKRAADFYESIKRLQDEVKSAMA---YPLFVLFFAVV 177

Query: 139 CVSTLVYFTSPGYMNVL 155
            V  + ++  P  +   
Sbjct: 178 IVLVISFYILPNLVRAF 194


>gi|295692601|ref|YP_003601211.1| competence protein [Lactobacillus crispatus ST1]
 gi|295030707|emb|CBL50186.1| Competence protein [Lactobacillus crispatus ST1]
          Length = 333

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 22/190 (11%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           MK++   +  K    +     LD +  S+  G  + +++ ++        R    R+   
Sbjct: 1   MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-RQLMERMASR 58

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115
              G S S  + ++           FS     Q       G L E L +L+ + R ++  
Sbjct: 59  MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGTLVECLQHLATLNRLKQEQ 108

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             K++    E      +   +   +  +  F S  + +   +D  G M++      +L+G
Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163

Query: 176 IMVMRLMINF 185
           +     ++  
Sbjct: 164 LYFFAKIVTL 173


>gi|283781435|ref|YP_003372190.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439888|gb|ADB18330.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 400

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+P+  +++V+  Q+S+P ++     +      G  + + ++R  R       
Sbjct: 69  LAALLRSGVPLLRSISVLRDQTSNPNLKEILDELYRKVEDGTPMGDVMARFPR-----AF 123

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +  +      GG L +AL  ++     ++ +K +  +        A +  ++   + 
Sbjct: 124 SDMAINMVRAGSEGGFLEDALERVASFTETQEELKGRTISAVAYPLILASVGTTVVTVLI 183

Query: 142 TLVYFTSPGYMNVL---------------INDPRGHMLLGVAAAFMLIGIMVMRLM 182
                        L               ++D   +  L + A    IG+ +   +
Sbjct: 184 VFFVPKFATMFERLKANNQLPMLTDWLLKLSDTLRNYGLVIVAVLAAIGVWLYMKL 239


>gi|190574658|ref|YP_001972503.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
 gi|190012580|emb|CAQ46208.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++ ++ Q+  P V      V      G  L+ +++       
Sbjct: 65  ATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALA-----AR 119

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM-EAKASAWIIGSL 136
            ++       +    +  G+L+  +  L+  + +R  ++AKV    +  A  S   +  +
Sbjct: 120 PRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIV 179

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
            F +S +V      ++      P    ++  A+AF
Sbjct: 180 IFLLSYVVPQVVTAFVQARQTLPMLTQVMLAASAF 214


>gi|168213196|ref|ZP_02638821.1| bacterial type II secretion system protein F [Clostridium
           perfringens CPE str. F4969]
 gi|170715199|gb|EDT27381.1| bacterial type II secretion system protein F [Clostridium
           perfringens CPE str. F4969]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|330941596|gb|EGH44379.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 405

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++  +M    +  I+  +   + 
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKK-AMTYPIAVLIVALIVSGIL 188

Query: 142 TL 143
            +
Sbjct: 189 LI 190


>gi|291615154|ref|YP_003525311.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585266|gb|ADE12924.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 405

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A  ++     +P V      +      G SL +S  +   Y      
Sbjct: 74  LATMLKSGVPLLQAFDIVGKGHDNPAVSRLLFDIKTDVETGSSLEQSFRKFPLY-----F 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+        +K+K+++      +   I   +   + 
Sbjct: 129 DDLYCNLLGAGEAAGILDSLLDRLATYKEKILAIKSKIKSALFYPISIIVIAFVITAVIM 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V        +    D  G  L+ +A +   +    
Sbjct: 189 IFVIPAFKDLFSNFGADLPGPTLVVMAISDFFVAWWW 225


>gi|197262922|ref|ZP_03162996.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241177|gb|EDY23797.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 400

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+  +   V  +++F  P +  +    N P 
Sbjct: 169 ILTMVALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|154148351|ref|YP_001406609.1| type II secretion system protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153804360|gb|ABS51367.1| type II secretion system protein [Campylobacter hominis ATCC
           BAA-381]
          Length = 413

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 61/140 (43%), Gaps = 15/140 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            + I    V+AG+P++DA+   V     + ++++   V      G+SL+E++        
Sbjct: 281 FMLIFTELVKAGIPIADALDTAVLMVDNEELKTKLSTVKIAVQQGVSLTEAMRN----TG 336

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E S    ++S   +  G+L + L N++   +++ +         +    S+++   L 
Sbjct: 337 LYE-SMLIQMVS-AGEKSGSLDKMLGNVTNYYKEKFD--------DIIDNISSYVEPILL 386

Query: 138 FCVSTLVYFTSPGYMNVLIN 157
             ++ +V   + G    + +
Sbjct: 387 LFMAAMVLLMALGIFMPMWD 406


>gi|153833903|ref|ZP_01986570.1| general secretion pathway protein F [Vibrio harveyi HY01]
 gi|148869741|gb|EDL68718.1| general secretion pathway protein F [Vibrio harveyi HY01]
          Length = 406

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S+            
Sbjct: 75  LSTLVQSGMPLEECLKAVSEQAEKPRIRSMIAAVRSKVTEGYPLADSLGDYPHVFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F ++++   +  G+L   L  L+  + +R+ M++K+    ++A     ++      + 
Sbjct: 131 ELFRSMVA-AGEKSGHLDAVLERLADYVENRQKMRSKL----LQAMIYPVVLVVFAVGIV 185

Query: 142 TLVY 145
           +L+ 
Sbjct: 186 SLLL 189


>gi|260770772|ref|ZP_05879701.1| general secretion pathway protein F [Vibrio furnissii CIP 102972]
 gi|260614009|gb|EEX39199.1| general secretion pathway protein F [Vibrio furnissii CIP 102972]
 gi|315178813|gb|ADT85727.1| general secretion pathway protein F [Vibrio furnissii NCTC 11218]
          Length = 407

 Score = 39.7 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +LS+S++   +       
Sbjct: 76  LSTLVQSGMPLEECLRAVSEQSEKPRIRNMLAAVRSKVTEGYTLSDSMADYPQVFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEAKASAWIIGSLPFCV 140
             F ++++   +  G+L   L  L+    +R+ M++K +QA+        + +  + F +
Sbjct: 132 ELFRSMVA-AGEKSGHLDAVLERLADYAENRQKMRSKLLQAMLYPIVLVVFAVAIVAFLL 190

Query: 141 STLV 144
           + +V
Sbjct: 191 AAVV 194


>gi|213051996|ref|ZP_03344874.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 224

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 403

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R    + D           + AG+P+  A+ VI  Q  D         + +    G 
Sbjct: 54  VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRYFGKVLEDIHKKVQSGS 113

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS +++      P         +I    ++ G++ +AL  ++        ++ K+    
Sbjct: 114 MLSRALAEKAECFPS----ILVNMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     A +I      +  ++ F  P ++ + 
Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197


>gi|296103140|ref|YP_003613286.1| general secretion pathway protein F [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057599|gb|ADF62337.1| general secretion pathway protein F [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 402

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+  A+  I  Q+ D  + +    + E    G +L ++ S+  R       
Sbjct: 72  LSTLVNASLPLESALKAISKQTEDKKLAAMVTEIREKVVEGHTLFDAFSQFPR-----TF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 + +  +  G+L + L  L+     R+ MK+K+ QA+      +   +  +   +
Sbjct: 127 DKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVVAVAVISILL 186

Query: 141 STLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMV 178
             +V      ++++    P     L+ V+      GI +
Sbjct: 187 VAVVPQVIEQFVHMKQQLPITTRTLIAVSDFLQAYGIYI 225


>gi|116048594|ref|YP_792607.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390958|ref|ZP_06880433.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PAb1]
 gi|115583815|gb|ABJ09830.1| probable type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   R   
Sbjct: 70  ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             E+      +    +  G+L++ +  L+  + +R  ++ K+
Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166


>gi|332160427|ref|YP_004297004.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664657|gb|ADZ41301.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860122|emb|CBX70445.1| protein transport protein hofC [Yersinia enterocolitica W22703]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + +   +R                  ++AGLP+ + + ++  +    P +   + + +  
Sbjct: 53  ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117
             G SLSE+++      P   +      +       G L+  L    +  +L   +  K 
Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172
           + + +    K   ++        + ++    P +  +    + P    +L     FM
Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210


>gi|182625510|ref|ZP_02953281.1| bacterial type II secretion system protein F [Clostridium
           perfringens D str. JGS1721]
 gi|177909198|gb|EDT71663.1| bacterial type II secretion system protein F [Clostridium
           perfringens D str. JGS1721]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P    + 
Sbjct: 73  VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP----NL 128

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             ++I    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 129 LISMID-AGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|123441047|ref|YP_001005036.1| type IV pilin biogenesis protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088008|emb|CAL10796.1| putative type II secretion system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + +   +R                  ++AGLP+ + + ++  +    P +   + + +  
Sbjct: 53  ISYWRGERLIAITRQL-------ATLLQAGLPLVNCLQLLAQEIDALPWQCLLQEISQQV 105

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALAN--LSRILRDRKNMKA 117
             G SLSE+++      P   +      +       G L+  L    +  +L   +  K 
Sbjct: 106 SQGQSLSEAMAHYPHTFPQ--LYPPVIAM-------GELTGNLEQCCVQLVLHQERQQKL 156

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172
           + + +    K   ++        + ++    P +  +    + P    +L     FM
Sbjct: 157 QKKVIKA-LKYPVFVCIVALVVSTVMLVLVLPEFAQIYQSFDTPL--PVLTATLLFM 210


>gi|254244923|ref|ZP_04938245.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192]
 gi|126198301|gb|EAZ62364.1| hypothetical protein PA2G_05799 [Pseudomonas aeruginosa 2192]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   R   
Sbjct: 70  ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             E+      +    +  G+L++ +  L+  + +R  ++ K+
Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166


>gi|15595884|ref|NP_249378.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|107100153|ref|ZP_01364071.1| hypothetical protein PaerPA_01001174 [Pseudomonas aeruginosa PACS2]
 gi|218893355|ref|YP_002442224.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|254239065|ref|ZP_04932388.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719]
 gi|9946567|gb|AAG04076.1|AE004503_14 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
 gi|126170996|gb|EAZ56507.1| hypothetical protein PACG_05245 [Pseudomonas aeruginosa C3719]
 gi|218773583|emb|CAW29397.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + A LP+  A++  + Q+    +      V      G+ L+++++   R   
Sbjct: 70  ATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALA--ARPRD 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             E+      +    +  G+L++ +  L+  + +R  ++ K+
Sbjct: 128 FPEIY---RALVAAGEESGDLAQVMERLADYIEERNALRGKI 166


>gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 405

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           V    +     A ++  +   +  L+ +  P +
Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196


>gi|66871270|gb|AAC23568.2| truncated type IV pilus assembly protein TapC [Aeromonas
           salmonicida]
 gi|88866545|gb|ABD57322.1| truncated TapC [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 342

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  ++ +I        +R    ++      G  +S+++ R  R+      
Sbjct: 82  ITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRH-----F 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++         A +I       S
Sbjct: 137 DALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPAMVILVAIVVTS 193

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 194 ILLLFVIPQFEDIF 207


>gi|294788003|ref|ZP_06753247.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
           29453]
 gi|294484296|gb|EFG31979.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
           29453]
          Length = 424

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++    S+  + +    V      G S++++ S+  +Y      
Sbjct: 93  LCTMMKAGLPLMQAFDIVAKGHSNASMTNLLMSVRADVEQGTSMADAFSKHPKY-----F 147

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S F   +    + GG L   L  L+  +   + +K KV++      A   +   L   + 
Sbjct: 148 SKFYCNLVGAGEAGGVLDSLLDKLATYMEKTEAIKKKVKSALTYPIAILVVAVVLVIVMM 207

Query: 142 TLVYFTSPGYMNVLIN--DPRGHMLLGVAAAFMLIGIMVM 179
             V        + +     P    ++G++ AF+  G +++
Sbjct: 208 MFVLPEFKKVYDSMGAKLPPLTEFMMGISNAFVAHGALII 247


>gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 411

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV----------GQSSDPVRSE 51
           +++ K+R    L D+   +   +  + AG+ +  A   I            + + P   E
Sbjct: 250 QNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERIAAGYEKTVQTGNRKARPAYEE 309

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRIL 109
               I     G++   +     R   LQ     + ++    + G  NL  AL   +    
Sbjct: 310 MCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQNRKTGSKNLKSALELEMVSAF 369

Query: 110 RDRKNMKAKV------QALSMEAKASAWIIGSLPFCVSTLVY 145
             RKN+  K+      + L         ++  +       +Y
Sbjct: 370 EQRKNLAKKLGEEAGTKLLLPLFLMLGVVMIMIVVPAFLAIY 411


>gi|168216750|ref|ZP_02642375.1| bacterial type II secretion system protein F [Clostridium
           perfringens NCTC 8239]
 gi|182381171|gb|EDT78650.1| bacterial type II secretion system protein F [Clostridium
           perfringens NCTC 8239]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|289627841|ref|ZP_06460795.1| general secretion pathway protein F [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 337

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196


>gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 294

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQH 60
             I+ R               V  +R  +P+ +A+  I   ++   R++F R  V   Q 
Sbjct: 129 RRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEALWQIAKDAAAQ-RTDFGRRFVARMQE 187

Query: 61  LGLS-LSESISRMVRYMPLQEVSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MK 116
             +  L +++  +     + E++ F   I        G+L++ L    R    + +  ++
Sbjct: 188 ARVRALGDALHDLAEEFRVPELTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVE 247

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           A+  A+ ++ +  + ++       +    F
Sbjct: 248 AEKNAMQLKLRMMSVVMFVYILGWAGYFAF 277


>gi|254508850|ref|ZP_05120960.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16]
 gi|219548236|gb|EED25251.1| type IV pilin biogenesis protein PilC [Vibrio parahaemolyticus 16]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++++    G  LS+++     +     V
Sbjct: 77  LATMLMTGVPLIQALKLVADNHRKAEMKSILSQIVKGVESGTPLSKTLRTASTHFDTLYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL+E    ++      + +KAKV    +    S  +I +L     
Sbjct: 137 DLVATG-----EQSGNLAEVFERIATYREKSEQLKAKVIKALIYP--SMVVITALSV-TY 188

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 189 LMLTVVIPEFESMF 202


>gi|227826590|ref|YP_002828369.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|229583754|ref|YP_002842255.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
 gi|238618676|ref|YP_002913501.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
 gi|227458385|gb|ACP37071.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|228018803|gb|ACP54210.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
 gi|238379745|gb|ACR40833.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
          Length = 616

 Score = 39.7 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 3/183 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           +  L + R      + P    +    +R+GL        +   ++    S+    V +  
Sbjct: 117 LSQLTENRRIGLDSEAPAFAAVFNVFLRSGLSARYVFDYLSKSTAMQYASQIASYVNKRV 176

Query: 60  H-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             LG  +  +I   + Y P +  + F T      + G  + + +   ++ +       A 
Sbjct: 177 KYLGEGVESAIVESLNYSPSKIFNEFLTTYVTAVRTGAPVLDTMEAKTKDILKNIETLAS 236

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM-LIGIM 177
             A ++   A  ++I      ++  +          L       ++   A   + LI ++
Sbjct: 237 TAAENLSGIAEGFVIWLSSGFITFFLVLLLQAIFPSLFGSVPFPIMAIFAMIMIPLINLL 296

Query: 178 VMR 180
            + 
Sbjct: 297 FIW 299


>gi|285019423|ref|YP_003377134.1| general secretion pathway protein f [Xanthomonas albilineans GPE
           PC73]
 gi|283474641|emb|CBA17140.1| probable general secretion pathway protein f [Xanthomonas
           albilineans]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
                   +   + AG P+  A+++++    D   +     + +    G  LS ++ R  
Sbjct: 66  ALVQFTQQLATLLGAGQPLDRALSILLELPEDERSKRTIGDIRDAVRGGAPLSTALER-- 123

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG+L + L  L+  L   + ++ +V    +       ++
Sbjct: 124 ---QHGLFSRLYINMVRAGEAGGSLHDTLQRLAEYLERSRELRGRVINALIYPAILVSVV 180

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
           G     +   V          L
Sbjct: 181 GCALLFLLGYVVPQFAQMYESL 202


>gi|237802035|ref|ZP_04590496.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024891|gb|EGI04947.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 405

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R     + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRVLVNSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++R     + +KAK++           ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVARYKEKTEKLKAKIKKAMT---YPIAVLIVAMIVSG 186

Query: 142 TLVYFTSPGYMNVL 155
            L+    P + +V 
Sbjct: 187 ILLIKVVPQFQSVF 200


>gi|18310825|ref|NP_562759.1| fimbrial assembly protein [Clostridium perfringens str. 13]
 gi|18145507|dbj|BAB81549.1| probable fimbrial assembly protein [Clostridium perfringens str.
           13]
          Length = 339

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+ +  ++ +I     D    E  +R+      G +LS++        P        
Sbjct: 19  VKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|312126627|ref|YP_003991501.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776646|gb|ADQ06132.1| hypothetical protein Calhy_0384 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 252

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K + + R  K      +   +    ++AGL +    AVI     +P  +  F +   T  
Sbjct: 92  KEIERTRKNKLRSSIADIALMCELGLKAGLSLDRIFAVIAETIVEPRYKDAFLQAAATYK 151

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              ++ +  + +   + L E+      +    ++G +  ++L   S++      ++   +
Sbjct: 152 TTHNIEDCFTILRSQLDLPELEILKRALLEVEKVGLSGIQSLEVFSQV-ETMNKIEQIYK 210

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
                   + + I ++ F + ++ +F
Sbjct: 211 KSDKARSYTTYAIVAMVFALISIYFF 236


>gi|4680723|gb|AAC23600.2| type IV pilin biogenesis protein [Vibrio vulnificus]
          Length = 409

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|254228552|ref|ZP_04921977.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|262392664|ref|YP_003284518.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|151938934|gb|EDN57767.1| general secretion pathway protein F [Vibrio sp. Ex25]
 gi|262336258|gb|ACY50053.1| general secretion pathway protein F [Vibrio sp. Ex25]
          Length = 405

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S +         E+
Sbjct: 74  LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 +    +  G+L   L  L+  + +R+ M++K+
Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166


>gi|169347023|ref|ZP_02865965.1| bacterial type II secretion system protein F [Clostridium
           perfringens C str. JGS1495]
 gi|169296706|gb|EDS78835.1| bacterial type II secretion system protein F [Clostridium
           perfringens C str. JGS1495]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMADYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC
          15703]
 gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
          L2-32]
 gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
 gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
          L2-32]
          Length = 171

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           P  L+++  ++R G  +  A+  +            R   E  + G+  +E+
Sbjct: 40 LPLILEMLSVAIRQGASIPRALITVGNIVEGEFGGGLRSAGERLNSGMPWNEA 92


>gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
 gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter
           tundripaludum SV96]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVG--QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   + +GLP+  ++ V++   + ++ V     RV+E    G +L++++ +         
Sbjct: 73  LATLLESGLPLDKSLLVLIDLTEDNERVTKLIGRVLEKVKGGATLADALEK-----QSGI 127

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            S F   +    + GG+L E L  LS  L   + +K  V   S      A ++      +
Sbjct: 128 FSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSRELKETV---STALIYPAILLIMSLASL 184

Query: 141 STLVYFTSPGYMNVLINDPRGHML-----LGVAAAFMLIGIMVM 179
             ++ F  P +  +   +  G  L     + V  A  L     M
Sbjct: 185 FVMLTFVVPQFSEMF--ESAGKALPVSTQIVVGLAEWLQSYWWM 226


>gi|207725097|ref|YP_002255494.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
 gi|206590327|emb|CAQ37288.1| general secretion pathway gspf-related protein [Ralstonia
           solanacearum MolK2]
          Length = 391

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AGL V +A+  +  +   P  RS    V+     G  LS +   M    P    + ++
Sbjct: 66  LEAGLSVFEALETLHEKEKRPFARSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 121

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           ++I    +   NL ++L+           ++AK+ + S+     A +  ++   +   V
Sbjct: 122 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 179


>gi|206578970|ref|YP_002240369.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342]
 gi|206568028|gb|ACI09804.1| pullulanase secretion protein PulF [Klebsiella pneumoniae 342]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80
           +   V AG+P+  A+  +  Q    P+R+    V      G SL+E++            
Sbjct: 73  LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 126

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G+L   L  L+     R+ ++A++Q    +A     ++  +   V
Sbjct: 127 FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQ----QAMIYPIVLTLVAISV 182

Query: 141 STLVYFT 147
             ++  T
Sbjct: 183 IAILLST 189


>gi|17548370|ref|NP_521710.1| general secretion pathway GSPF-like transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17430616|emb|CAD17300.1| probable general secretion pathway gspf-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 395

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AGL V +A+  +  +   P  RS    V+     G  LS +   M    P    + ++
Sbjct: 70  LEAGLSVFEALETLHEKEKRPFSRSVLASVLARLSEGKPLSTAFGEMPELFP----ALYT 125

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
           ++I    +   NL ++L+           ++AK+ + S+     A +  ++   +   V
Sbjct: 126 SIIRTAERT-SNLPQSLSRYVEYQTRLDGVRAKIASASIYPMVLAVVGAAVMLFLLGYV 183


>gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
          Length = 276

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSL 65
           RT+ F     N L I+   V +G+ + + +  +     DP +  EF+ +++     G+ +
Sbjct: 87  RTSHFERYLANTLMIMTPLVASGVTLEELIDTLAIIERDPYIAREFKIILKDAREGGMDI 146

Query: 66  SESISRMVRYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             ++   +  +P +      S  +    + + L   L   L  L R   ++     +V +
Sbjct: 147 LTALRASLNRVPSRTYNEVFSLITETYLISANLADILMLKLEYLVRNKYNKLRSATQVLS 206

Query: 122 LSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           L ME    +A ++  L   +   +    P Y+  +   P   +L+       ++G  VM 
Sbjct: 207 LFMEVYLVTALLLPILLVLIIVTISPLGPIYLGSITLSPTLVLLITTLIYSPVMGY-VMY 265

Query: 181 LMIN 184
           L+I+
Sbjct: 266 LLID 269


>gi|319937245|ref|ZP_08011652.1| type II secretion system protein [Coprobacillus sp. 29_1]
 gi|319807611|gb|EFW04204.1| type II secretion system protein [Coprobacillus sp. 29_1]
          Length = 396

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 9/176 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           L D       +   + +G+ +   + +I  +++DP +++ ++ V      GLSLS ++  
Sbjct: 56  LKDLSEFCRELGTMLSSGISLIMTINIITKRTTDPKLQAVYKDVYVKLQQGLSLSSALEA 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P   ++ F       S+  G +      LS        ++ KV++  +       
Sbjct: 116 QGELFPSLMINMF-----RASESTGMMDRTAMKLSVQFDKDNKLQNKVKSAMLYPMILIV 170

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +   +   V T++    P + +V    P   +   +      +       +I   V
Sbjct: 171 VTVCVVIAVFTMIL---PNFFDVFEGTPIPLITQIMFGISKAMTAYWEWFLIGILV 223


>gi|229588337|ref|YP_002870456.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
 gi|229360203|emb|CAY47060.1| type IV fimbrial assembly protein [Pseudomonas fluorescens SBW25]
          Length = 383

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  +I       PVR   + + +    G SL+E++ +  RY    E+
Sbjct: 53  LATLLKAGIPLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFD--EL 110

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + ++A+++  +M    +  ++ SL   V 
Sbjct: 111 Y---CNLVAAGEQAGALETLLERVAIHREKSEQLRARIKK-AMTYPIAVLVVASLVTGVL 166

Query: 142 TL 143
            +
Sbjct: 167 LI 168


>gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
          Length = 404

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 29/177 (16%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VR+GLP+ +A+  +  QS  P +RS    V      G +L+  +S      P    
Sbjct: 74  LATLVRSGLPIEEALGTVARQSEKPRIRSMLMAVRTRVMEGHTLARGLSDFPHVFP---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + T +    +  G+L   L  L+    +R+ M+ K+Q         A +         
Sbjct: 130 DIYRTTVE-AGEQSGHLEVVLERLADYTENRQQMRQKIQLALF---YPAILTAMALLVTI 185

Query: 142 TLVYFTSPGYMNVL--------------------INDPRGHMLLGVAAAFMLIGIMV 178
            L+ +  P  + V                     + D    MLLG+  A M +G ++
Sbjct: 186 ALLAYVVPEVVQVFEGIGQELPWLTRTLIAVSDGLRDYGLWMLLGLVLAGMAVGWLL 242


>gi|86148307|ref|ZP_01066602.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222]
 gi|85833932|gb|EAQ52095.1| type IV pilin biogenesis protein PilC [Vibrio sp. MED222]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S    +      G  +S+++            
Sbjct: 77  LATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAM-----RTASSHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +L GNL++    L+      + +K+KV    +       ++        
Sbjct: 132 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTM---VVAVALTVSY 188

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 189 LMLTMVIPEFESMF 202


>gi|83859852|ref|ZP_00953372.1| probable type II secretion system protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852211|gb|EAP90065.1| probable type II secretion system protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 418

 Score = 39.7 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            +  +   +RAG P+  A   ++ +     +  +   +      G  LSE++SR      
Sbjct: 83  FMRQLATLLRAGAPLLGAFDSLLEEEPCRELSEQMNAIRSDLRAGGRLSEALSR-----H 137

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSL 136
           +  +  +++ +    +  G+L   L  ++  +        +V+ ALS  A  +    G++
Sbjct: 138 MPTLPDYASRLVELGEATGSLDVRLNEVAAQMERDLTAAEEVRNALSYPAFLAVAGFGAV 197

Query: 137 PFCVSTLV 144
            F    +V
Sbjct: 198 IFIFMFVV 205


>gi|323497016|ref|ZP_08102039.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326]
 gi|323317860|gb|EGA70848.1| general secretion pathway protein F [Vibrio sinaloensis DSM 21326]
          Length = 407

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 76  LATLVQSGMPLEECLRAVSEQSEKPRIRTMLLAVRSKVVEGYTLADSLADYPHIFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++    +  G+L   L  L+    +R+ +++K+Q    +A     ++      + 
Sbjct: 132 ELFRSMV-QAGEKSGHLDGVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVGIV 186

Query: 142 TLVY 145
             + 
Sbjct: 187 AFLL 190


>gi|291455823|ref|ZP_06595213.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291382751|gb|EFE90269.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 155

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V  +LG      L  +  +    + M+          +A+  ++ +LP     L      
Sbjct: 59  VSEELGCRAVPCLEAVLDVYSHMRLMQNMRAQAFAVPQATVGLLSALPAIAVVLGELMGA 118

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +  L    RG + L       ++G++ MR ++ 
Sbjct: 119 HPLLFLFGSQRGLVCLVSGGCCYVVGLVWMRALMR 153


>gi|30249579|ref|NP_841649.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30138942|emb|CAD85521.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 394

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
             +    ++  + AGL + + +  +V +  D V  E  ++++     G++ S ++    +
Sbjct: 58  LSDFSQELLALLTAGLSLVEGIETLVEKEEDSVTRELLQQILARLREGVTFSRALEFYPQ 117

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P      +   I    Q G +L EAL+           ++ K+   S+       + G
Sbjct: 118 VFPS----LYVATIRASEQTG-DLGEALSRYLVYQSQMDLVRKKLVGASIYPVLLLVLGG 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   +   V          +  D     +L +
Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMGTDLPWMSMLLI 205


>gi|134298887|ref|YP_001112383.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
 gi|134051587|gb|ABO49558.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           K  A F   F            +G+P+  ++ ++  Q+ +  ++     + E    G SL
Sbjct: 63  KELALFCRQF-------ATLSSSGVPIVQSLYLLKEQTGNKALKGALEAIAEDLQGGKSL 115

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++S   +       S F   +    ++ G+L   L  L+        ++ K +     
Sbjct: 116 GQALSSHHKI-----FSAFFINMVEAGEMSGSLDHVLDRLADYFERAYELREKFKTAIT- 169

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
               A+I+      +  +  F  P +  ++I 
Sbjct: 170 --YPAFIMSMAICTIGCVFIFVLPTFAQIIIE 199


>gi|217967556|ref|YP_002353062.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
 gi|217336655|gb|ACK42448.1| type II secretion system protein [Dictyoglomus turgidum DSM 6724]
          Length = 400

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 16  FPNALD---IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
            P  +         +R+G+ +++ ++ +  Q+ +   +     V +    GLSLSE++S+
Sbjct: 60  LPELVLFTSQFATLLRSGIILTECLSTLASQTDNAYFKDVLLDVRKNVDAGLSLSEALSK 119

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                P      F +++    ++ G+L   L  LS+    +  ++ K+++ + 
Sbjct: 120 YPDVFP----KIFISLVRT-GEVTGSLDLMLDRLSKYFDSQHELREKIKSATT 167


>gi|121610838|ref|YP_998645.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121555478|gb|ABM59627.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 407

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   S++P V      +      G SLS +     +Y      
Sbjct: 77  LATMMKAGVPLLQSFDIVGRGSTNPSVTKLLNDIRSDIETGTSLSGAFRHYPKY-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L  L+  +   + +K+++++  M   A   +   +   + 
Sbjct: 132 NELYCNLVEAGETAGILESLLDRLATYMEKTEAIKSRIKSALMYPSAVLCVAFVVVSLIM 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     LL +A +   +    +
Sbjct: 192 VFVIPAFKEVFTSFGADLPPPTLLVMAISETFVHWWWL 229


>gi|311105840|ref|YP_003978693.1| general secretion pathway protein F [Achromobacter xylosoxidans A8]
 gi|310760529|gb|ADP15978.1| general secretion pathway protein F [Achromobacter xylosoxidans A8]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + A LP+  A++  + Q+    + +    V +    G  LS +++   R     E+
Sbjct: 71  LASLLAASLPLDAALSATLEQAEKKHIAAVLGGVRDDVRAGHKLSTALA--ARPRDFPEI 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L++ +  L+  + +R  +++KV    +     A +   +   + 
Sbjct: 129 Y---RALIGAGEESGDLAQVMEKLADYIEERNALRSKVLTAFIYPAVVACVSVIIVIFLL 185

Query: 142 TLV 144
             V
Sbjct: 186 GYV 188


>gi|149182919|ref|ZP_01861377.1| comG operon protein 2 [Bacillus sp. SG-1]
 gi|148849368|gb|EDL63560.1| comG operon protein 2 [Bacillus sp. SG-1]
          Length = 345

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 12/144 (8%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSE 67
              F   F      +   + +G+ ++ A+  +  QS  P+  E   R+I+   +G S  E
Sbjct: 206 LKLFYTQF--FSREMSYLLNSGMSINQALTEVGSQSYRPLFKELAERMIQDLRIGKSFPE 263

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           S+     +           VI    +  G L   L   S+   +   +  K     ++  
Sbjct: 264 SVEYFGLFTD-----GLIEVIR-HGERRGQLPRELFTYSQFCMETLEVSGKKLLSVIQ-- 315

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGY 151
             A  +    F +        P +
Sbjct: 316 -PAVFLFIGVFILLIYFSIMIPLF 338


>gi|104783252|ref|YP_609750.1| type II secretion system protein F [Pseudomonas entomophila L48]
 gi|95112239|emb|CAK16966.1| putative type II secretion system protein F [Pseudomonas
           entomophila L48]
          Length = 400

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +   V AG+P+ DA+A +  Q   P       V+      L+  
Sbjct: 53  RRQRLSRAQLCELTRQLATLVGAGIPLVDALATLERQLRQPA---LHAVLVALRGSLAEG 109

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++R +        +     +    +  G L + LA L+  L   +  + K +   +  
Sbjct: 110 LGLARSLARQGQP-FTGLYCALVEAGERSGRLGQVLARLADHLEQVQRQRHKARTALI-- 166

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              A ++G     V  L+ F  P       +  +    +      +  G++
Sbjct: 167 -YPAVLMGVSLAVVVGLMTFVVPKLTEQFAHSGQSLPFITSLLIGLSQGLV 216


>gi|168206103|ref|ZP_02632108.1| putative pilus biogenesis protein [Clostridium perfringens E str.
           JGS1987]
 gi|169343782|ref|ZP_02864781.1| putative pilus biogenesis protein [Clostridium perfringens C str.
           JGS1495]
 gi|169298342|gb|EDS80432.1| putative pilus biogenesis protein [Clostridium perfringens C str.
           JGS1495]
 gi|170662446|gb|EDT15129.1| putative pilus biogenesis protein [Clostridium perfringens E str.
           JGS1987]
          Length = 339

 Score = 39.7 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+ +  ++ +I     D    E  RR+ +    G +LS++     +  P        
Sbjct: 19  VKSGMSIGRSLDLIKNTVKDKKYKESLRRIEKKVLNGEALSKAFKEEGKLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
 gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
          Length = 417

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 47  PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANL 105
           P   E          G+S + +  R  +    +E    ++++    + G + L   L + 
Sbjct: 310 PAYDEMYEADCNMQAGISEAAAYERFGKKCDTREYMKLASLLQTNIKKGTSQLRVLLEHE 369

Query: 106 SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                +++   AK++      K    ++  L   ++ ++ 
Sbjct: 370 VNESFEKRKNIAKIKGEEATTKLLFPMLLMLGVVMAIIMI 409


>gi|110800691|ref|YP_696959.1| type II secretion system protein F [Clostridium perfringens ATCC
           13124]
 gi|168211644|ref|ZP_02637269.1| bacterial type II secretion system protein F [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675338|gb|ABG84325.1| bacterial type II secretion system protein F [Clostridium
           perfringens ATCC 13124]
 gi|170710395|gb|EDT22577.1| bacterial type II secretion system protein F [Clostridium
           perfringens B str. ATCC 3626]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQCEKPKLREALIGVNGELKRGETLASSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM
           3043]
          Length = 297

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 28  RAGLPVSDAVAVIVG---QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFF 84
            AG+ +   +  ++     ++     E R V      G +  E++  +      + +   
Sbjct: 160 EAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQAREEALEEVAGIQASEGLGDL 219

Query: 85  STVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             +++  S  GG   ++L  L+ +LRDR+  + +     +  K S             ++
Sbjct: 220 LKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRLSGKMS-----------LVMM 268

Query: 145 YFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
            F  P  + VL     G  +L +A A   +G
Sbjct: 269 VFLFPALLIVL----AGPAVLNLAGALATLG 295


>gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX]
 gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX]
          Length = 246

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 37  VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96
           VA +      P+ +    V     LG   + +   +       E++     ++  S  G 
Sbjct: 127 VAAVAQALGGPLGTALDGVARQLRLGADPARAWQSLHAP---AELAAVGRALARASHTGA 183

Query: 97  NLSEALA-NLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            L++ +  + +   R  +    ++   +  A      +  LP  V   V   + G ++ L
Sbjct: 184 PLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLAAGLVSGL 243


>gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM
           4359]
 gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM
           4359]
          Length = 399

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ + +A+ ++  Q  +     FR++I    + +   ++++   R + +
Sbjct: 65  FCRQLSIMISAGIRIKEALNILARQ--EVFSKRFRKIILEIAINVETGDTLADAFRKVGV 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    +    + GG L   L   +      K ++ +V++         +++     
Sbjct: 123 --FDNVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSAMA---YPLFVLFFAVV 177

Query: 139 CVSTLVYFTSPGYMNVL 155
            V  + ++  P  +   
Sbjct: 178 IVLVISFYILPNLVRAF 194


>gi|242277878|ref|YP_002990007.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
 gi|242120772|gb|ACS78468.1| type II secretion system protein [Desulfovibrio salexigens DSM
           2638]
          Length = 408

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH 60
           K +  K+   F   F          + + LP+  A++ +  Q+    +      +     
Sbjct: 64  KRISYKQITSFTRQF-------ATLLGSSLPLVRALSFLRDQNEGTLLGEVIGTINSRVR 116

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G+ LS +++   +Y            +    + GG L +A+  L+ +   ++++++KV 
Sbjct: 117 EGMPLSRALAEYPKY-----FDILYVSLVAAGETGGMLDQAMDRLAFMREAQEDLRSKV- 170

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             S      A +  ++   + T++    P +  + 
Sbjct: 171 --SGAMIYPAIMFIAMVGAIITMMLLVVPRFAQMF 203


>gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
 gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
          Length = 200

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP- 77
            L+++   + AG  +  A+ ++   +S       R V+    +G     +        P 
Sbjct: 64  MLELVAAMLDAGSSIGRALELVSMSASARYSESLRPVVSALAIGADWETAWRSSAVRQPG 123

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSL 136
           + E+      +   +  G   S  L   +  LR  +   A+ +A S+  K    + + SL
Sbjct: 124 ILELR---DALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLCSL 180

Query: 137 PFCVSTLV 144
           P  +   V
Sbjct: 181 PAFICLGV 188


>gi|310658165|ref|YP_003935886.1| type II secretion system protein [Clostridium sticklandii DSM 519]
 gi|308824943|emb|CBH20981.1| putative Type II secretion system protein [Clostridium sticklandii]
          Length = 348

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 28  RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           ++G+P+ D + +      DP ++   + + +    G SL   I +  ++ P+    + ++
Sbjct: 24  KSGIPILDGMEIFAKDMMDPRLKEVAQDMQQQLAQGYSLHSVIEK-YKFFPV----YLAS 78

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           ++ +  Q G NL + L  LS        +  K++           ++  +   +  LV  
Sbjct: 79  MVKIAEQTG-NLQDELERLSDYYEQTDRLNNKIK---SAVTYPLILLVLMAGVILFLVLK 134

Query: 147 TSPGYMNVLIN 157
             P +  +L++
Sbjct: 135 VLPMFHEILLS 145


>gi|57233905|ref|YP_182063.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
           195]
 gi|57224353|gb|AAW39410.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
           195]
          Length = 401

 Score = 39.7 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 13/164 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G  +  ++ ++  Q+++ + R     ++     G SLS ++S+  +  P    
Sbjct: 71  LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG+L   L NL+  ++     + K+++        A +   +   + 
Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLANFVQRNVETEKKIKSALTYPSVVAVVGILVLLLMV 185

Query: 142 TLVYFTSPGYMNVLIND-------PRGHMLLGVAAAFMLIGIMV 178
           T V        + +  +         G      A    + GI +
Sbjct: 186 TFVLPAFTSLYSQMGTELPAATRILIGISDFFGAWGLYVTGIFI 229


>gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium
           HP15]
          Length = 290

 Score = 39.3 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
               +    V AGL    ++ +I     +    +     R       G   + ++  + +
Sbjct: 147 ELCQMTRMLVEAGLSPERSLKLISHQARELMPRLIRRIDRFNRVMESGADRTVALDELGK 206

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              L  +  + +++     LG  ++  L  +    +  +    K +   + A+ +  ++ 
Sbjct: 207 NRNLTVLRNYVSLMKQSGTLGSKVAGGLDQIVEEAQHEERSNLKEETNKIGARMTVIMMV 266

Query: 135 SLPFCVSTLV 144
            +   +  L+
Sbjct: 267 FMLPSLFLLI 276


>gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           V    +     A ++  +   +  L+ +  P +
Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196


>gi|237807312|ref|YP_002891752.1| type II secretion system protein [Tolumonas auensis DSM 9187]
 gi|237499573|gb|ACQ92166.1| type II secretion system protein [Tolumonas auensis DSM 9187]
          Length = 418

 Score = 39.3 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++       P+R     +      G   S+++ +  RY      
Sbjct: 87  IATMLTAGVPLVQTLRLLASSHEKRPMREMLSTICADIETGTPPSKALRQFPRY-----F 141

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++         A +I       +
Sbjct: 142 DDLYCDLVASGEQSGALDAIFDRIAIYREKAEALKSKIKK---AMFYPATVIFVALVVSA 198

Query: 142 TLVYFTSPGY 151
            L+ F  P +
Sbjct: 199 ILLIFVIPEF 208


>gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|94312325|ref|YP_585535.1| general secretion pathway protein F [Cupriavidus metallidurans
           CH34]
 gi|93356177|gb|ABF10266.1| general secretory pathway component, cryptic [Cupriavidus
           metallidurans CH34]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           ++ L  +  A F              + +GLP+ +A+  +  Q+      E    +    
Sbjct: 60  VRRLSTQEQALFTRQL-------ASLIVSGLPLDEALGALADQAERQYVHELLAGIRAEV 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SLS ++++  +     +       +    +  G+L   L  L+  +  R  + +K+
Sbjct: 113 MGGSSLSVALAQHPK-----DFPDIYRALVSAGEHSGHLGMVLERLATYIETRNTLTSKI 167

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           +           +  ++   V  L+ +  P  ++V  N 
Sbjct: 168 RLAFTYPAIVTVVAFAI---VIFLLSYVVPQVVSVFANT 203


>gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
 gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|148263980|ref|YP_001230686.1| type II secretion system protein [Geobacter uraniireducens Rf4]
 gi|146397480|gb|ABQ26113.1| type II secretion system protein [Geobacter uraniireducens Rf4]
          Length = 402

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 24/175 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++AGLP+  A+  I+ +     +      + E    G +LS +  +  +  P    
Sbjct: 72  LLVLIKAGLPIIQALDTILERVEKGKLGEILSEIREDVKGGAALSVAFEKHPKVFPH--- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +  G+L + +      L+  +  + KV          A +I      V+
Sbjct: 129 --LYIASIQAGERTGDLPQTIRRYIAFLKKAEGFRKKV---LSALVYPAIVITVAFVAVT 183

Query: 142 TLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRL 181
            L+ +  P +  V  +      +                       ++ I + R 
Sbjct: 184 LLLVYVVPTFSQVYADSGSSLPVPTQMLIAFTGILKKFFWAGVGLFILAIFIFRR 238


>gi|330900441|gb|EGH31860.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   +      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKPEHFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++        +A ++ ++     
Sbjct: 131 ELFCNLVD-AGEQAGALESLLDRVATYKEKTEKLKAKIK--KAMTYPTAVLVVAVIVSGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P +  V            L V A    +    +
Sbjct: 188 LLIKVV-PQFQTVFSSFGADLPLFTLMVIALSEFVQQWWL 226


>gi|218710510|ref|YP_002418131.1| type IV pilin assembly protein pilC [Vibrio splendidus LGP32]
 gi|218323529|emb|CAV19719.1| Type IV pilin assembly protein pilC [Vibrio splendidus LGP32]
          Length = 408

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S    +      G  +S+++            
Sbjct: 77  LATMLATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAM-----RTASTHF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +L GNL++    L+      + +K+KV    +       +  ++ + + 
Sbjct: 132 DDLYTDLVATGELSGNLAQVFERLATYREKSEQLKSKVIKALIYPTMVVAVALTVSYLML 191

Query: 142 TLVYFTSPGYMNVL 155
           T+V        +  
Sbjct: 192 TMVIPEFESMFSSF 205


>gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 294

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR--VIETQHLGLS-LSESISRMVRYMPLQE 80
           V  +R  +P+ +A+  I   ++   R++F R  V   Q + +  L +++  +     + E
Sbjct: 150 VSLLRRRIPLEEALWQIARDAAAQ-RTDFGRRFVARMQEVRVRALGDALHDLAEEFRVPE 208

Query: 81  VSFFSTVISVQS-QLGGNLSEALANLSRILRDRKN--MKAKVQALSMEAKASAWIIGSLP 137
           ++ F   I        G+L++ L    R    + +  ++A+  A+ ++ +  + ++    
Sbjct: 209 LTRFVQAIRHAEANSLGSLADILETQIRDESAQLDELVEAEKNAMQLKLRMMSVVMFVYI 268

Query: 138 FCVSTLVYF 146
              +    F
Sbjct: 269 LGWAGYFAF 277


>gi|325107203|ref|YP_004268271.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324967471|gb|ADY58249.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 345

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 20/178 (11%)

Query: 20  LDIIVRSVR----AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74
           L ++ RS+     +G+    A  +   +S S  +R     +++    G  ++ S+    +
Sbjct: 11  LALMCRSLSTLLDSGVAADKAFRIAGEKSGSATIRETSASIVDEIKRGNDIATSLEE-QQ 69

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P    +   +++ V  Q G  L E L  L+    +   ++               +  
Sbjct: 70  VYP----ALMVSMVHVAEQTG-TLPEILRGLADHYENLVRLRKDFYQAISWPVIQLVLAV 124

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG--------IMVMRLMIN 184
            +   +  L+   +    +  I D  G  L G + A   +G          +   M+ 
Sbjct: 125 FVIAGLIFLLGMIADSNQSEPI-DVLGWGLTGTSGALTWLGLVFGGAFSFFICYRMLQ 181


>gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 402

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  V+AG+P+  A+  I+ +     +    R+V +    G SLS ++ R  R  P    
Sbjct: 72  MLVLVKAGMPIMQALNTILQRQDGSRLTEVLRQVRDDVKGGASLSTALERHGRLFP---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             +   +    +  G+L        + L+  + ++ KV
Sbjct: 128 HLYIASVR-AGERTGDLINTTRRYIQYLKRVEAIRKKV 164


>gi|257874735|ref|ZP_05654388.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257808899|gb|EEV37721.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 285

 Score = 39.3 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 17/154 (11%)

Query: 32  PVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTVI 88
            V  ++ ++V +    +  E  ++I   ++G         +  +       ++ FF   +
Sbjct: 109 TVDQSLQLVVKRLDGELARELTQLIAALNVGSDPQRVSALLKELGERY-SADL-FFGQYL 166

Query: 89  SVQSQL----GGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
             Q +     G    E L ++    +++L      +    +L    K        L   +
Sbjct: 167 D-QLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGVKIMTIAFLLLILLM 225

Query: 141 STLVYFTS---PGYMNVLINDPRGHMLLGVAAAF 171
               Y  +     Y+    +   G+ +  + +  
Sbjct: 226 HGASYMMNGNLDQYIQGFSHHIIGYAVATICSVS 259


>gi|315227313|ref|ZP_07869100.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM
           10105]
 gi|315119763|gb|EFT82896.1| hypothetical protein HMPREF0620_1581 [Parascardovia denticolens DSM
           10105]
          Length = 307

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 12/171 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVG---QSSDPVRSEFRRV-IETQHLGLSLSESISRMV 73
           + +  ++  +  G  + DA   + G      +      + V       G S    ++R+ 
Sbjct: 85  DFIAELISLLHNGSGMVDACQEMGGMVFAIPELTDDRMKAVLARRCGHGRSDRAYLTRLA 144

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
           R               + + LG + S+ L  +    +    +  K ++     + +  ++
Sbjct: 145 RQ--------LVASCKLSATLGCSASQCLEAVGVEHKRYLAVADKKRSALSIPRLTVKVL 196

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             LP  V      TS     VL   P G + L +AA    +G+  ++ ++ 
Sbjct: 197 LILPLLVLGGSQLTSARTFQVLFMRPVGWLCLSLAAILYGLGLRWVKRLLR 247


>gi|312143781|ref|YP_003995227.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
 gi|311904432|gb|ADQ14873.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
          Length = 403

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   +D       AG+ + DA+ ++  QS    ++    +V +    G+SL++++S
Sbjct: 70  FSQQFAAMID-------AGISLVDALNILADQSDHKHLKKVLMQVRDDVETGVSLADAVS 122

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +     P  E+    + +    + GG L   L  L+     +  + + V+         A
Sbjct: 123 KHPDSFP--ELY---SQLIRAGESGGVLDTILNKLANHYDRQHELNSMVK---SALYYPA 174

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I+      V  LV    P ++ + 
Sbjct: 175 VILSVGLIVVIFLVTQVVPQFVGMF 199


>gi|188586711|ref|YP_001918256.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351398|gb|ACB85668.1| type II secretion system protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 404

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          ++AG+ V D++  +  Q     +      V E+   G SL+ES  
Sbjct: 71  FSRQF-------ATMIKAGVTVLDSLESLSEQMDSKKLSRGLVNVTESLRGGNSLAESFH 123

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P      F  +IS   + G  L + L  ++        +  K++          
Sbjct: 124 EQKDVFP----ELFVNMISAGEEAGA-LEDVLERMAVHYEKEHQLLEKIK---SAMTYPV 175

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            ++G     V  LV +  P +  + 
Sbjct: 176 ILLGVAFLVVYFLVTYVLPEFAGIF 200


>gi|254426789|ref|ZP_05040496.1| general secretion pathway protein F [Alcanivorax sp. DG881]
 gi|196192958|gb|EDX87917.1| general secretion pathway protein F [Alcanivorax sp. DG881]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GLPV  A++ +  Q++ D +      V      G SL+ S     R  P  E+
Sbjct: 74  LATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLARSFESFPRAFP--EM 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L + L  L+  L  R +    V          A+I+      + 
Sbjct: 132 YRATVA---AGEQSGHLEQVLEQLADYLETRHDTGRSVAQ---AMIYPAFIMVFASIVIM 185

Query: 142 TLVYFTSPGYMNVL 155
            ++ F  P  + V 
Sbjct: 186 LMMTFVVPKLVAVF 199


>gi|93004899|ref|YP_579336.1| type II secretion system protein [Psychrobacter cryohalolentis K5]
 gi|92392577|gb|ABE73852.1| type II secretion system protein [Psychrobacter cryohalolentis K5]
          Length = 407

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P++ +  ++     +P ++    ++      G + + ++ R  RY      
Sbjct: 76  LATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F +++    +  G L   L  ++      + +KAK++ 
Sbjct: 132 DLFCSLVD-SGEQSGALETMLERVATYKEKSELLKAKIKK 170


>gi|294055942|ref|YP_003549600.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615275|gb|ADE55430.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 428

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
            +G+P+ DA+ V+  + S+P + E    +      G +L+ +++R  RY          +
Sbjct: 102 SSGMPIGDAIKVLSQRISNPEQKELATAIWRDLSEGATLATALNRQPRYFASS-----VS 156

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +    +  G+L+  LA +   L +R  ++ K+ A              +     T++  
Sbjct: 157 FVIEAGEATGSLAPILAKVIEYLEERDAIRKKMLASMAYPLVVCTFALGVVILFITVLLP 216

Query: 147 TSPGYMNVLIN--DPRGHMLLGVAAAFMLIG-IMVMRLMINF 185
                MN +         +L+  ++  +  G  +++ L++ F
Sbjct: 217 RIQDMMNKIGGEMTWSARILMDGSSFLINFGPYILIALILAF 258


>gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
 gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 29  AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P    +  +    ++P        V +    G  +  ++     + P          
Sbjct: 276 AGIPFLQGLESVTETLANPFWSQRLALVQQDISSGKPIWLALKNSCEFSP------LCIQ 329

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAK---VQALSMEAKASAWIIGSLPFCVSTLV 144
           +    +  G+L   L NL+    ++   +AK             +  IIG+L   +   +
Sbjct: 330 LVRTGEASGSLDAMLRNLAHHHGEKTLAQAKNLAALLEPALLVITGLIIGTLVVAMYLPI 389

Query: 145 Y 145
           +
Sbjct: 390 F 390



 Score = 35.1 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 18/163 (11%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           + H  + R+A+ +             ++AGL +S  +A++  Q      ++  R +    
Sbjct: 52  ISHWSRTRSAETIHQL-------ATLLKAGLTLSTGLALLAEQHPSTQWQALLRTLAYDM 104

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G++LS S+S+     P          +    +L G L +    L+   + ++ +  KV
Sbjct: 105 EQGITLSASLSQWQHVFPP-----LYQAMIRTGELTGKLDDCCFELAYQQKKQQQLADKV 159

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           +      +    II      V  ++ F  P +  +    N P 
Sbjct: 160 KKAL---RYPIIIITMAVMVVFAMLQFVLPEFAAIYQTFNTPL 199


>gi|91224971|ref|ZP_01260230.1| general secretion pathway protein F [Vibrio alginolyticus 12G01]
 gi|91190217|gb|EAS76487.1| general secretion pathway protein F [Vibrio alginolyticus 12G01]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S +         E+
Sbjct: 74  LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 +    +  G+L   L  L+  + +R+ M++K+
Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166


>gi|330940252|gb|EGH43384.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 242

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 5   ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 64

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 65  SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 116

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 117 VGVLGSLALLLAYVVPQFVPIF 138


>gi|319786265|ref|YP_004145740.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464777|gb|ADV26509.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
           11-1]
          Length = 419

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 7/159 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A+ +I G   +P +R+    +      G SL E+IS      P+Q  
Sbjct: 89  MATMMKSGVPIVGALEIIAGGHKNPRMRNMIDTIRTDIEGGSSLYEAIS----RHPVQ-F 143

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++    + +++K K++        +  +   +   + 
Sbjct: 144 DELYRNLVRAGESAGVLETVLDTIATYKENIESLKGKIKKALFYPAMTIAVAIIVSAILL 203

Query: 142 TLVYFTSPGYMNVLIND-PRGHMLLGVAAAFMLIGIMVM 179
             V             D P    ++  A+ FM+    +M
Sbjct: 204 IFVIPQFEEVFQGFGADLPAFTKMIVAASNFMVSYWWIM 242


>gi|300867503|ref|ZP_07112154.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
 gi|300334497|emb|CBN57322.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
          Length = 375

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+ +   +AV+  Q S+P +++    +      G  LS ++ +            F ++
Sbjct: 48  AGVAMVRCLAVLNEQCSNPKLKNALTSISADVEQGSELSTAMRKFPDVFD----QLFLSM 103

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    ++GG L E L  L+ ++      ++++++     K    ++         +  F 
Sbjct: 104 VG-AGEVGGVLDEVLERLAVLMEKNHKTQSEIKSAMSYPKT---VLFIAIIIFFAMTIFL 159

Query: 148 SPGYMNVL 155
            P +  + 
Sbjct: 160 LPTFAKIF 167


>gi|261402162|ref|YP_003246386.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369155|gb|ACX71904.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 344

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 5/168 (2%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYM 76
           AL  +V  +RAG  + + +  I   +    V  E R +I   ++ G SL E++ R     
Sbjct: 177 ALLYMVSILRAGASLPEVLESISKSEEYGIVSFEVRSIIRDVNIAGYSLVEALERAKLRT 236

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME--AKASAWIIG 134
            +  +      + +    G NL   L  L   +  +  MK       ++     +  +  
Sbjct: 237 EIPLLKKLYDQMIIGYNKG-NLPMLLEKLYEDIVRQSMMKLDTSKFLIQNLGNLAFGVGL 295

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
            LPF    L    +      ++N     +        ++ GI V   +
Sbjct: 296 ILPFSGMILSTMIANQGFPGILNTLNLLLTKIGPLLTLIFGIFVKMKI 343


>gi|161612487|ref|YP_001586452.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168234908|ref|ZP_02659966.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735161|ref|YP_002113159.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|161361851|gb|ABX65619.1| hypothetical protein SPAB_00177 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710663|gb|ACF89884.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291724|gb|EDY31074.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 28/178 (15%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAA 170
           I+      V  +++F  P +  +                         G ++L +A  
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILFLAML 226


>gi|171914419|ref|ZP_02929889.1| type IV pilus biogenesis protein PilC [Verrucomicrobium spinosum
           DSM 4136]
          Length = 426

 Score = 39.3 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 17/151 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESIS 70
           F       +D       +GLP+   + V+  Q  +P+ +     + ++   G + SES+ 
Sbjct: 86  FTRQLATLID-------SGLPLLRGLTVLGRQEPNPIMKRTINTLADSVQTGSTFSESLQ 138

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +  R             + +     G L   L  +   L + +    K++   + A    
Sbjct: 139 QFPRIYN---------KLYINMVKAGELGGVLELVLNRLAEYQEKAQKLKNKIVAAMVYP 189

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            I+  +   +   +          +  D  G
Sbjct: 190 MIVMIIAVGIMIFLMTVIVPKFEKIFEDMLG 220


>gi|331010776|gb|EGH90832.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|325920916|ref|ZP_08182809.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
           19865]
 gi|325548598|gb|EGD19559.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
           19865]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|166713412|ref|ZP_02244619.1| general secretion pathway protein F [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|24372011|ref|NP_716053.1| type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1]
 gi|24345872|gb|AAN53498.1|AE015489_11 type IV pilus biogenesis protein PilC [Shewanella oneidensis MR-1]
          Length = 423

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+++    RY     V
Sbjct: 91  IATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYV 150

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L      ++      + +K+K++         A ++       +
Sbjct: 151 DLVA-----AGEHSGSLDVVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAILVTA 202

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 203 LLLLFVVPQFEDIF 216


>gi|303248629|ref|ZP_07334884.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489979|gb|EFL49903.1| Type II secretion system F domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 408

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 28  RAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
            +G+PV   + ++V    +  +  EFRRV +    G  LS  +SR   + P        T
Sbjct: 284 SSGVPVLTTIDILVETIGNAAISKEFRRVQDMIRTGQGLSAPLSRAKYFTP-----MVVT 338

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           ++SV  + G NL + L+ +S       +  A+V       + S  +   L   ++ +V F
Sbjct: 339 MVSVGEESG-NLDDMLSAISE------HYDAEVAY--AVKRLSDALGPVLIVGLAGVVGF 389

Query: 147 TSPGYMNVLIN 157
            +      + +
Sbjct: 390 FALAIFLPMWD 400


>gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus
           catus GD/7]
          Length = 491

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS---------DPVRSE 51
           +K  +++R  + L  +P  +  ++  + AG+ V  +   ++  +          D +  E
Sbjct: 331 LKKRLEERNEQLLYAYPGFVHRMILMLGAGMTVRRSWNRLLDDNERLDSGHLEEDWLYRE 390

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
            +        G+   ++     + M LQ+   FS ++    + G   +   +   +    
Sbjct: 391 MKYTRIQMESGVPEIQAYLEFGQRMELQQYKKFSQLLIQYIKRGSKGMQALMQQEAAEAE 450

Query: 111 DRKNMKAKVQALSMEAK 127
            ++   AK    +   K
Sbjct: 451 KQRRDLAKQLGETAGTK 467


>gi|269964605|ref|ZP_06178844.1| General secretion pathway protein F [Vibrio alginolyticus 40B]
 gi|269830732|gb|EEZ84952.1| General secretion pathway protein F [Vibrio alginolyticus 40B]
          Length = 405

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  Q+  P +RS    V      G  L++S +         E+
Sbjct: 74  LSTLVQSGMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFD--EL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 +    +  G+L   L  L+  + +R+ M++K+
Sbjct: 132 Y---RSMVAAGEKSGHLDTVLERLADYVENRQKMRSKL 166


>gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum
           ATCC 824]
 gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA
           2018]
          Length = 396

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   + AG  + ++++++  +    +R   + + +    G S+ +S+      +P     
Sbjct: 68  MSYMMNAGFNICESLSIMYDKFQGNMRRIIKCIEKGIENGNSIYKSVQYCGDSIPY---- 123

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
           FF +++ +  + G NLSE   NL    +D+   + K++  +      A +       +  
Sbjct: 124 FFKSMLFIGEESG-NLSEVFRNLGEYYKDQWKTEEKIKNATT---YPAIVFAFTIIILVF 179

Query: 143 LVYFTSPGYMNVL 155
           LV    P ++  L
Sbjct: 180 LVSKVIPRFVETL 192


>gi|317050497|ref|YP_004111613.1| type II secretion system F domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945581|gb|ADU65057.1| Type II secretion system F domain protein [Desulfurispirillum
           indicum S5]
          Length = 401

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 15/132 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           ++ G+P++ A+ ++   +++P +R E +   E  + G     ++               +
Sbjct: 280 LQGGIPLAAAMEMVRDTTANPLLRQELQLAHELLNQGAPFHAALE------ACTIFPGLA 333

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             ++   + GG L + L   +     +   K +  A   E          L       V 
Sbjct: 334 VQMARTGEEGGTLEQMLEKTATFYEQQAQQKLRTLAGYTE--------PLLLLLSGVFVL 385

Query: 146 FTSPGYMNVLIN 157
             + G +  +  
Sbjct: 386 ILALGILLPMWQ 397



 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   +  G+ ++ A++++      P   +   R+ +    G S S +         
Sbjct: 68  FLHQLSALLGCGISLATALSMLATSMESPTWHTILTRMEQDLSRGQSASNTFR--SHRYA 125

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             ++  F   +    +L G L E L   + I+  ++  + +   L    +    ++ SL 
Sbjct: 126 FGDLLPFLVEVG---ELSGRLEEMLLRAASIMESQREFRKR---LGDALRYPLIVLTSLL 179

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
                 V    P + ++         LL 
Sbjct: 180 GAFVFAVTMIIPRFADIFARSEATLPLLT 208


>gi|168701870|ref|ZP_02734147.1| type IV fimbrial assembly protein PilC [Gemmata obscuriglobus UQM
           2246]
          Length = 414

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 18/175 (10%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
            +K+   F   F    D       AGLPV  ++ ++  Q     +++    V++    G 
Sbjct: 72  KQKQLVTFTRQFSTLQD-------AGLPVLRSLRILERQMPPSALKNSMIDVVDDVESGS 124

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           +LSE++SR  +       S     +    + GG L   L  L+  L   +++K+K+    
Sbjct: 125 ALSEALSRHPK-----AFSKLYVNMVRAGEAGGALEIILQRLADFLEKAQSLKSKIIG-- 177

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 A +I      ++ ++    P +  +   D  G  L       + +   +
Sbjct: 178 -AMVYPAVVIFVAVAILTFIMVAIIPKFKKIF--DEFGMTLPWATLTLIRVSNWM 229


>gi|44004389|ref|NP_982057.1| hypothetical protein BCE_A0050 [Bacillus cereus ATCC 10987]
 gi|42741455|gb|AAS44900.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 276

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 117 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233


>gi|330966306|gb|EGH66566.1| general secretion pathway protein F [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|330875838|gb|EGH09987.1| general secretion pathway protein F [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|262163781|ref|ZP_06031521.1| general secretion pathway protein F [Vibrio mimicus VM223]
 gi|262027761|gb|EEY46426.1| general secretion pathway protein F [Vibrio mimicus VM223]
          Length = 393

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L  +     +G+P+   +  ++  S+D  +    +R+      G SLSE+I+      P 
Sbjct: 62  LRELATLRESGMPLDQCINSLLENSTDRQMALVLKRLHSDIESGSSLSEAIAAQPDSFPY 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               + S+++ +  +  G L EAL ++S  +   + + ++V++          +  +  F
Sbjct: 122 ----YVSSMLRL-GEASGQLGEALFSISERIEREEKLVSEVKSALTYPAFLLIVCVATIF 176

Query: 139 CVSTLVY 145
            +   V 
Sbjct: 177 FMFLYVI 183


>gi|47568977|ref|ZP_00239668.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|47554361|gb|EAL12721.1| conserved hypothetical protein protein [Bacillus cereus G9241]
          Length = 276

 Score = 39.3 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 117 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233


>gi|300690940|ref|YP_003751935.1| type II secretion system protein F (gspF) [Ralstonia solanacearum
           PSI07]
 gi|299078000|emb|CBJ50642.1| putative type II secretion system protein F (gspF) [Ralstonia
           solanacearum PSI07]
          Length = 397

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R  K           +   +RAGL VS+A+  +  +   P    +R++ +   
Sbjct: 49  LARSLQNRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL LSES+ ++    P          I    + G  + +AL   ++  + ++ ++ KV 
Sbjct: 107 SGLPLSESMKQVEGVFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV- 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 161 --VSAAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 214


>gi|225076115|ref|ZP_03719314.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
           NRL30031/H210]
 gi|224952559|gb|EEG33768.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
           NRL30031/H210]
          Length = 177

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 1   MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           +K   K+R  +     F              ++AGLP+  A  ++    S+P  +E   +
Sbjct: 62  VKTARKRRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHSNPSMTE---M 111

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +      +    ++ +     P +    F   +    + GG L   L  L+      + +
Sbjct: 112 LTQIRSDVEQGSALGKSFSKYP-KYFDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQAI 170

Query: 116 KAKVQ 120
           K K++
Sbjct: 171 KKKLK 175


>gi|73749037|ref|YP_308276.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
 gi|73660753|emb|CAI83360.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
          Length = 401

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G  +  ++ ++  Q+++ + R     ++     G SLS ++S+  +  P    
Sbjct: 71  LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG+L   L NL+  ++     + KV++          +       + 
Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALT---YPGVVAVVGILVLL 182

Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +V F  P +      M   +  P   +L+G++  F   G+ V+
Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-RILIGLSDFFESWGLYVI 225


>gi|307595210|ref|YP_003901527.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550411|gb|ADN50476.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 302

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 64/163 (39%), Gaps = 2/163 (1%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + + +   + L D P  + +I   + +G P+     ++       +       I  + +G
Sbjct: 70  YRLWRVNNEILVDMPAVVRVIRDGLGSGQPLVGVAEMLTRVGKGRLGRIIAEAITKESMG 129

Query: 63  LS-LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           ++ + E ++ + R +    ++  + ++    + G  L E L    + L D  + + +   
Sbjct: 130 ITTMKEGLAEVSRELGNNYLAVLAVILDTAIRSGARLQETLDMAYKSLEDMVSYQLEKAN 189

Query: 122 LSMEAKASAWIIGSLPFCVST-LVYFTSPGYMNVLINDPRGHM 163
                 A  +++ ++   ++  ++Y   P    + I+   G +
Sbjct: 190 QVKPYLALIYVVMAIYVVLAGIIIYLMMPSIGKIAISTSAGAI 232


>gi|227877250|ref|ZP_03995323.1| competence protein [Lactobacillus crispatus JV-V01]
 gi|256848888|ref|ZP_05554322.1| competence protein [Lactobacillus crispatus MV-1A-US]
 gi|262045780|ref|ZP_06018744.1| competence protein [Lactobacillus crispatus MV-3A-US]
 gi|312977666|ref|ZP_07789413.1| competence protein [Lactobacillus crispatus CTV-05]
 gi|227863106|gb|EEJ70552.1| competence protein [Lactobacillus crispatus JV-V01]
 gi|256714427|gb|EEU29414.1| competence protein [Lactobacillus crispatus MV-1A-US]
 gi|260573739|gb|EEX30295.1| competence protein [Lactobacillus crispatus MV-3A-US]
 gi|310895405|gb|EFQ44472.1| competence protein [Lactobacillus crispatus CTV-05]
          Length = 333

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 22/190 (11%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           MK++   +  K    +     LD +  S+  G  + +++ ++             R+   
Sbjct: 1   MKYIGNSKKDKLNGEEQLA-FLDYLKHSLDNGFSLLNSIELMPALWPKR-CQLMERMASR 58

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNM 115
              G S S  + ++           FS     Q       GNL E L +L+ + R ++  
Sbjct: 59  MKEGASFSTELLKLG----------FSKTTVTQVNLALQQGNLVECLQHLATLNRLKQEQ 108

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             K++    E      +   +   +  +  F S  + +   +D  G M++      +L+G
Sbjct: 109 MKKLR---AELSYPLVLAIMMVILLVFMQSFISTQFSDS--SDHSGDMVMIGLIIIVLLG 163

Query: 176 IMVMRLMINF 185
           +     ++  
Sbjct: 164 LYFFAKIVTL 173


>gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
 gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans
           SRS30216]
          Length = 305

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R A F     + +D++     +G   S+A+A         P       + + +  G + +
Sbjct: 157 RRADFRAAITSYMDLVAMRAASGAGASEALADAARIGRGWPFARVRLALADARISGYTPA 216

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ R+   + + E+   S  + +    G      L   +R LRD +     V       
Sbjct: 217 RALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLA---VAQGKAGE 273

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
           ++   +I  L   +  +++   P   N + 
Sbjct: 274 RSQTMVIAQLLLALGFMLFVLYPPVSNFMT 303


>gi|293400854|ref|ZP_06644999.1| putative type II secretion pathway protein XcpS
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305880|gb|EFE47124.1| putative type II secretion pathway protein XcpS
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 397

 Score = 39.3 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           L +  +    +   + +G+ +  A++++V +  +P +++ +  +      G++LS ++  
Sbjct: 57  LKELSDFSRQLGTMIGSGVSLIRAISILVQRQKNPKIKAIYTDIYRKLQQGMTLSYAMEE 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P          + +     G  S  +  ++  +  +     +++     A     
Sbjct: 117 QGKAFPE---------LMINMYRTGETSGQMERVAMTMALQYEKDNRIKGKVRNAMIYPI 167

Query: 132 IIGSL-PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+  +  F V  +  F  P +  V        +   V A    +      ++I
Sbjct: 168 ILICVTIFVVIGVFTFIIPSFSKVFNGMELPMITKIVNAISEAMLAYWYWMLI 220


>gi|168464305|ref|ZP_02698208.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632934|gb|EDX51388.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 400

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+      V  +++F  P +  +    N P   +  G+ A     G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221


>gi|160936832|ref|ZP_02084197.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440213|gb|EDP17959.1| hypothetical protein CLOBOL_01721 [Clostridium bolteae ATCC
           BAA-613]
          Length = 403

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
               P     +   + AG+P+S A+ V  G + D  ++     + E+ H G +LSE++  
Sbjct: 65  QRQLPLLCRQLAAMLTAGVPLSRALEVSAGSARDKTLKVTLAGLRESIHKGRTLSEAMEE 124

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           M    P    +    +     +  G L E L  ++      + +  KV+           
Sbjct: 125 MKGVFP----NLLVYMTRT-GESSGRLDELLHKMAGYYGREEELNGKVR---AAMTYPVI 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM---LLGVAAAFMLIGIMVMRLMI 183
           +          ++    P + ++L       +   ++ ++ +    G++ + L++
Sbjct: 177 LFSITVLAAVFMLTTVLPQFASMLQEQELPWITRMMMRLSFSLRSRGVLYIMLIL 231


>gi|299537659|ref|ZP_07050950.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1]
 gi|298726911|gb|EFI67495.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1]
          Length = 246

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 55/176 (31%), Gaps = 8/176 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRS---VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
             ++  K+       L  +      ++ G  V  A           ++      I+    
Sbjct: 60  QNRQLKKYQMHLSELLKYVTNMIFFLQTGENVLHAFKETKATVHPDIQKAIEISIQQLEK 119

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              L+    +         +  F   + +Q + GGN  +  + + + +      + ++  
Sbjct: 120 EAQLNT---KQFEKYDFPTLDQFHQNLKIQYEHGGNPGDLFSQIHKNMIFELKKRDELYR 176

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                  + +++  +   +S ++ F      +  +N   G+  LGV     +   +
Sbjct: 177 KRRGFAMAVYMLLGMVMGISLMLRFIVGELWDTFLN--VGYAGLGVLLITQVFAFL 230


>gi|269103693|ref|ZP_06156390.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163591|gb|EEZ42087.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 406

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 13/158 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V+A +P+ + +  +  Q+  P +++    V      G +L++S++           
Sbjct: 75  IATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEFPHI-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 +    +  G+L   L  L+    +R+ M++K+ QA+      +   I  + F +
Sbjct: 130 DQLFRAMVAAGEKSGHLDAVLNRLADYAENRQQMRSKLQQAMIYPTMLTLIAISVVSFLL 189

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +T+V    P  ++  +    G  L  +    +     V
Sbjct: 190 ATVV----PKIVDQFVRT--GQPLPTITEVLLAASNFV 221


>gi|167957566|ref|ZP_02544640.1| pilin biogenesis protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 410

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P++ ++  +   + +PV R     V      G+SL++++ +  +       
Sbjct: 75  LSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGKHPKV-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L E L  L+        ++ K++           ++        
Sbjct: 130 SDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIK---SAMTYPVVLVVISVLAFF 186

Query: 142 TLVYFTSP 149
            L+ F  P
Sbjct: 187 GLMIFVIP 194


>gi|27364988|ref|NP_760516.1| type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6]
 gi|27361134|gb|AAO10043.1| Type 4 fimbrial assembly protein pilC [Vibrio vulnificus CMCP6]
          Length = 408

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
 gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
          Length = 612

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LG S+ +++    +  P + +  F        + G  +   +   ++ + D+  ++A + 
Sbjct: 182 LGESVEDAMLHASQISPSKLLKDFFLAYVTAVRTGAPVINTIEAKAKDILDQLQLRASLA 241

Query: 121 ALSMEAKASAWII----GSLPFCVSTLVYFTSP 149
           A  +   A +++I    G + F +  ++    P
Sbjct: 242 ADRLSGIAESYVIWLSSGYIMFFLMMVLEAIFP 274



 Score = 37.8 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            +  I   +RAGLP    +  I               +     LG  L ++  +      
Sbjct: 393 FMRAIAEGLRAGLPPETIIKNIKDSKEMGKFGKILNEIYAYITLGYPLKDAFRKGAER-- 450

Query: 78  LQEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
           + + +   +++S+    ++G    E + +++R +  +  +K        E+K    ++  
Sbjct: 451 IMDFTSKISLVSLADMMEIGSMTPETVESIARQIESQIKIKR-----DYESKVKILLVTP 505

Query: 136 LPFCVSTLV 144
               + +L+
Sbjct: 506 YMGVILSLI 514


>gi|317493265|ref|ZP_07951687.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918658|gb|EFV39995.1| type II secretion system protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 397

 Score = 39.3 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS---EFRRVIETQHLGLSLSESISRMVRYM 76
           ++ +   + AGLP++  + ++      P+R      +R+    + G+ LSE++       
Sbjct: 64  IEQLATLLHAGLPLAKCLTLLAE--GHPLRHWQCLLQRLASQINNGIPLSEAMMDYSSIF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P       +T      +L G L E+   LS   + +  +KAK+       +  A ++   
Sbjct: 122 PPVYGKTIATA-----ELTGRLDESCLALSEQQKRQVELKAKIVKAL---RYPALLLSVT 173

Query: 137 PFCVSTLVYFTSPGY 151
              ++ ++ +  P +
Sbjct: 174 VIVITIMLVWVLPQF 188


>gi|297537652|ref|YP_003673421.1| Type II secretion system F domain-containing protein [Methylotenera
           sp. 301]
 gi|297256999|gb|ADI28844.1| Type II secretion system F domain protein [Methylotenera sp. 301]
          Length = 393

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+PV  A+ ++ G     +R +  +   +   G  +S ++ +   
Sbjct: 259 QLARFYRTLGMLLRGGIPVVSALEMVSGLLQPILRRQLVQASNSIREGKPISHAMEQFGL 318

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRI 108
             P+  +      + V  + GG + E    ++  
Sbjct: 319 TTPVA-LRL----LRVGERTGG-MGEMTERIANF 346


>gi|115524668|ref|YP_781579.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518615|gb|ABJ06599.1| type II secretion system protein [Rhodopseudomonas palustris
           BisA53]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +R+GLP+ +A+ V     S  +     ++      G +L +++ R       
Sbjct: 68  FLGELSLVLRSGLPLDEALDVTGRDLSPRLAGTATQLRHDIVAGSTLVQALGRHKDVFSD 127

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                    ++  +++ G+L   LA ++    +R+      + +    +  A++I S   
Sbjct: 128 D-----IIAMTRVAEVTGDLDGVLAAIAG---ERERGHRLNEKVQGALRYPAFLISSAVL 179

Query: 139 CVSTLVYFTSPGYMNVL 155
            +   +    P + N+ 
Sbjct: 180 VLLFFLVQVIPQFSNLF 196


>gi|212638472|ref|YP_002314992.1| type II secretory pathway component PulF [Anoxybacillus
           flavithermus WK1]
 gi|212559952|gb|ACJ33007.1| Type II secretory pathway component PulF [Anoxybacillus
           flavithermus WK1]
          Length = 403

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L      ++AG+ + DA  ++  Q+    ++     + E    G  LS +++      P 
Sbjct: 69  LRQFATLLKAGVTIVDATRILAEQTESKALKKALVHIEEQLRSGQPLSTAMTDHPNIFPP 128

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                    +    +  GN+ E L  L+         + K+ +   
Sbjct: 129 -----LVINMIRAGEASGNMDETLERLADHFEKVHRTRQKIVSALA 169


>gi|21244268|ref|NP_643850.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109914|gb|AAM38386.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 391

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 40  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 97

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 98  VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 152

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 153 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 189


>gi|242238913|ref|YP_002987094.1| general secretion pathway protein F [Dickeya dadantii Ech703]
 gi|242130970|gb|ACS85272.1| general secretion pathway protein F [Dickeya dadantii Ech703]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +R+    V      G SL+E++            
Sbjct: 77  LATLVAAALPLEEALDAVARQSEKPRLRALMAAVRAKVVEGHSLAEAMGNFPN-----SF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|200387629|ref|ZP_03214241.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604727|gb|EDZ03272.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+      V  +++F  P +  +    N P   +  G+ A     G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221


>gi|190015135|ref|YP_001966620.1| conserved hypothetical protein [Bacillus cereus]
 gi|190015401|ref|YP_001966946.1| hypothetical protein pPER272_0075 [Bacillus cereus]
 gi|116584811|gb|ABK00926.1| conserved hypothetical protein [Bacillus cereus]
 gi|116585082|gb|ABK01191.1| conserved hypothetical protein [Bacillus cereus]
          Length = 276

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 117 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 175

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 176 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233


>gi|228925183|ref|ZP_04088293.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834522|gb|EEM80051.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAASLNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|227544183|ref|ZP_03974232.1| competence protein [Lactobacillus reuteri CF48-3A]
 gi|300908178|ref|ZP_07125644.1| type II secretion system protein [Lactobacillus reuteri SD2112]
 gi|227185819|gb|EEI65890.1| competence protein [Lactobacillus reuteri CF48-3A]
 gi|300894605|gb|EFK87961.1| type II secretion system protein [Lactobacillus reuteri SD2112]
          Length = 344

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               N   ++   +  G  V +A+  I    +  +      + +    G S ++S+ +  
Sbjct: 20  QQQANFFLLLADLLSVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-- 76

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               +++   F  ++   ++  GNL++ L+ + +IL  R+  + K+ +L    +    ++
Sbjct: 77  ---EVKD-DLFYQLLL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILL 127

Query: 134 GSLPFCVSTLVYFTSPG 150
           G L   +  L+ F  P 
Sbjct: 128 GMLGVVICGLILFVFPE 144


>gi|88704168|ref|ZP_01101882.1| general secretory pathway protein F [Congregibacter litoralis KT71]
 gi|88701219|gb|EAQ98324.1| general secretory pathway protein F [Congregibacter litoralis KT71]
          Length = 393

 Score = 38.9 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  ++ V++  +S P + +    V+++   G +LS ++            
Sbjct: 63  LAVLLRAGLPLDRSLKVLIEMASLPSMGALLSDVLKSVKDGKALSVALEPYADLFG---- 118

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+ +++    +  G +S  L  L   L + K  +  V          A ++      + 
Sbjct: 119 RFYLSMLR-SGEASGEMSAVLDRLVAHLEESKATRDSV---VSALIYPAILLVVAVLSIV 174

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  P     L ND
Sbjct: 175 VMLAFVVPQ-FESLFND 190


>gi|269129022|ref|YP_003302392.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
 gi|268313980|gb|ACZ00355.1| type II secretion system protein [Thermomonospora curvata DSM
           43183]
          Length = 247

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%)

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +  ++ R+      + +        + +  G   +  +A+L+  LRD +  + +V A   
Sbjct: 122 IPAALERLSARPGAEGLRLLGACWRIGADSGATFATVIADLAAALRDEEAQRREVAAQLA 181

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             +A+A ++  LP     +        +  L     G + L +     ++G+     +  
Sbjct: 182 GPRATARLLAGLPLLGLGMAAALGADPLAFLCGTLPGLICLTLGLGLDVLGLWWTNRLAR 241


>gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 185

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++    + AGL    AV  +   S       +        +G+ ++ + S +     L+
Sbjct: 56  LELFAACLEAGLSTRSAVLAVAEASPQ-----WSEAAALIGVGVPMNTAWSALASQPHLE 110

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPF 138
           E+   +    +  + G  ++     L   LR   + +A  +A       +A + +  LP 
Sbjct: 111 ELVRLT---QLSGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCFLPA 167

Query: 139 CVSTLVY 145
            +   + 
Sbjct: 168 FLVLGLI 174


>gi|254507326|ref|ZP_05119462.1| general secretion pathway protein F [Vibrio parahaemolyticus 16]
 gi|219549786|gb|EED26775.1| general secretion pathway protein F [Vibrio parahaemolyticus 16]
          Length = 407

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++G+P+ + +  +  QS  P +R+    V      G +L++S++           
Sbjct: 76  LATLVQSGMPLEECLKAVSEQSEKPRIRTMLLAVRSKVVEGYTLADSLADYPHIFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F +++    +  G+L   L  L+    +R+ +++K+Q    +A     ++      + 
Sbjct: 132 ELFRSMV-QAGEKSGHLDGVLERLADYAENRQKLRSKLQ----QAMIYPVVLVVFAVGIV 186

Query: 142 TLVY 145
             + 
Sbjct: 187 AFLL 190


>gi|37680964|ref|NP_935573.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016]
 gi|37199714|dbj|BAC95544.1| type IV pilus (Tfp) assembly protein PilC [Vibrio vulnificus YJ016]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|114321539|ref|YP_743222.1| general secretion pathway protein F [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227933|gb|ABI57732.1| general secretion pathway protein F [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 404

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VR+GLP+ D +  +  Q+  P ++S    V      G +L++ +       P  ++
Sbjct: 74  MATLVRSGLPLEDVLRTVSRQTDKPRLKSLMLAVRNRVLEGHTLAQGLGDFPHVFP--DI 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140
              +       +  G+L   L  L+     R+ M+ KVQ     A     I+  +   V 
Sbjct: 132 YRTTVA---AGEKSGHLDIVLERLAEYTEGRQQMRQKVQM----ALFYPIILTVMAIGVT 184

Query: 141 STLVYFTSPGYMNVL 155
            TL+ +  P  + V 
Sbjct: 185 LTLLTYVVPEVVGVF 199


>gi|167032060|ref|YP_001667291.1| general secretion pathway protein F [Pseudomonas putida GB-1]
 gi|166858548|gb|ABY96955.1| general secretion pathway protein F [Pseudomonas putida GB-1]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +   + AG+P+ DA+A +  Q   P       V+      L+  
Sbjct: 53  RRQRLSRAQLCELTRQLATLIGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++R +        +     +    +  G L++ L  L+  L   +  + K +   +  
Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYP 168

Query: 127 KASAWIIGSLPFCVSTLV------YFTSPGYMNVLINDPR----------GHMLLGVAAA 170
                +  ++   + T V       F   G    LI              G  ++G+A  
Sbjct: 169 TVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVLAGPWMVGLALM 228

Query: 171 FMLIGIMVMRL 181
             ++G  ++R 
Sbjct: 229 LAVLGGWLLRK 239


>gi|28870480|ref|NP_793099.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970082|ref|ZP_03398214.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato T1]
 gi|301381439|ref|ZP_07229857.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato Max13]
 gi|302132993|ref|ZP_07258983.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28853727|gb|AAO56794.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925186|gb|EEB58749.1| general secretion pathway protein F [Pseudomonas syringae pv.
           tomato T1]
 gi|331017221|gb|EGH97277.1| general secretion pathway protein F [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|16759139|ref|NP_454756.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140689|ref|NP_804031.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420543|ref|ZP_03353609.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213427393|ref|ZP_03360143.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213612707|ref|ZP_03370533.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648263|ref|ZP_03378316.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289823718|ref|ZP_06543330.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25297478|pir||AE0520 protein transport protein HofC STY0164 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501429|emb|CAD01301.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136313|gb|AAO67880.1| transport protein HofC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|300361338|ref|ZP_07057515.1| competence protein [Lactobacillus gasseri JV-V03]
 gi|300353957|gb|EFJ69828.1| competence protein [Lactobacillus gasseri JV-V03]
          Length = 326

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            +D + +++  G  ++ ++ ++    S    S+   + +    G  L + +  +      
Sbjct: 14  FIDYLKQALINGYSLNASLKLLPKIWSGN-SSQLVYISKQVEEGRQLGDVLHEVG----- 67

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS+ +S Q  +    GNL   L  LS+++R +     K++         A +IG 
Sbjct: 68  -----FSSTLSAQINMAIIDGNLLSCLDQLSKLIRLKNKQLKKLRGELA---YPALLIGM 119

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           +   +  +  F      +        +++LG     ++IG  ++  +I
Sbjct: 120 MVTLLICMQTFLKTEMSDNDWTS---NLMLGGLVLLVIIGAFLISKII 164


>gi|15806863|ref|NP_295586.1| pilin biogenesis protein [Deinococcus radiodurans R1]
 gi|6459643|gb|AAF11416.1|AE002026_4 pilin biogenesis protein [Deinococcus radiodurans R1]
          Length = 406

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE----TQHLGLSLSESISRMVRYMPL 78
           +   + AG+P+  ++A++  Q  +     F  VI+        G  LSE++ +  +    
Sbjct: 75  LATLINAGVPLVQSLAILQRQLDN---KTFEAVIKKVRGEVESGQPLSEALQQHPKIFG- 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                F  ++    +  G L   L  ++     +  ++ K++  S     +  ++ +L  
Sbjct: 131 ---RLFINLVR-AGETSGTLDTVLERIADFQEKQLALQGKIK--SALTYPTVVLVFALGI 184

Query: 139 CVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMVMRLMINF 185
               L     P +  +L            ML+ V+      G++++ ++   
Sbjct: 185 TYFLLTTVV-PQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVI 235


>gi|147669803|ref|YP_001214621.1| type II secretion system protein [Dehalococcoides sp. BAV1]
 gi|146270751|gb|ABQ17743.1| type II secretion system protein [Dehalococcoides sp. BAV1]
          Length = 401

 Score = 38.9 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G  +  ++ ++  Q+++ + R     ++     G SLS ++S+  +  P    
Sbjct: 71  LALLLESGTDIVTSLELLQEQTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG+L   L NL+  ++     + KV++          +       + 
Sbjct: 128 --LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALT---YPGVVAVVGILVLL 182

Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +V F  P +      M   +  P   +L+G++  F   G+ V+
Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-RILIGLSDFFESWGLYVI 225


>gi|326943572|gb|AEA19465.1| hypothetical protein CT43_P281123 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|218456567|gb|ACK77478.1| type IV pilin assembly protein [Vibrio vulnificus]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------VKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|317051457|ref|YP_004112573.1| general secretion pathway protein F [Desulfurispirillum indicum S5]
 gi|316946541|gb|ADU66017.1| general secretion pathway protein F [Desulfurispirillum indicum S5]
          Length = 406

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLPV +A+  +  Q+  + VRS    V      G SL++S+++  R  P  ++
Sbjct: 76  MATLIQAGLPVEEALKAVAAQTEKNRVRSILLGVRAKVMEGYSLAKSLAQYPRAFP--DL 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L   L  L+     ++  + KVQ   +     A +  +    V+
Sbjct: 134 YRSTVA---AGEHAGHLDLVLERLADYTEGQQRSRQKVQLALL---YPAILTVTSILIVT 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
            L+ +  P  + V ++  +    L +A   +
Sbjct: 188 FLLGYVVPDVIKVFVDTGQELPGLTIALISL 218


>gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 474

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 29  AGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AGLP+  ++ ++ +      +++    V +    G +LSE++++  +       S     
Sbjct: 89  AGLPILRSLRILELQSKPGALKNALMDVGDEIESGSTLSEAMAKSPKV-----FSRLYIN 143

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    + GG L   L  LS  L   +++K KV+   +       +  S+   +   +   
Sbjct: 144 MIKAGEAGGALEVILRRLSEFLERSESLKRKVKGAMIYPVVVVLVAISILVFIMLKIVPV 203

Query: 148 SPGYMNVL 155
                +  
Sbjct: 204 FKKMFDEF 211


>gi|317484813|ref|ZP_07943709.1| bacterial type II secretion system F domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923943|gb|EFV45133.1| bacterial type II secretion system F domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 413

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 64/175 (36%), Gaps = 21/175 (12%)

Query: 23  IVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLP+ +A+ ++     +  ++    R+ +    G  L++ ++           
Sbjct: 83  LATLLHAGLPLDEALASICAHDDASRMQGIVSRLRDRIMAGGDLADGLAEFPNVFSST-- 140

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-----AWIIGSL 136
             F T++    +  G L   +   +  +  +  +  KVQA               +I  L
Sbjct: 141 --FVTMVR-AGEASGTLELVIERFAEHIEQQVALVRKVQATLAYPILMLFVGIGVVIFLL 197

Query: 137 PFCVSTLVYFTS--------PGYMNVLINDPR--GHMLLGVAAAFMLIGIMVMRL 181
            F +  +    S        P  + + ++D    G  ++ +    ++IG+  MR 
Sbjct: 198 TFVIPKVTQIFSDMGRALPVPTQILLAVSDGIRSGWWIILLLVLCIMIGVWRMRR 252


>gi|189424344|ref|YP_001951521.1| general secretion pathway protein F [Geobacter lovleyi SZ]
 gi|189420603|gb|ACD95001.1| general secretion pathway protein F [Geobacter lovleyi SZ]
          Length = 403

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     A +P+ +A+  +   + +  +RS   R+      G  L+ ++S   +      +
Sbjct: 73  LSTLTAAAVPIHEALEALHRQEKTGELRSILSRLRSRLAEGSPLARAMSSEPKVFGESYI 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +  +       + GG L + L  L+  L  ++ M+  V          A +   +   + 
Sbjct: 133 AMVA-----AGEAGGALDKVLQRLADFLERQEEMRRSVSTALAYPGLMAVVGSGV---ML 184

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            L+ F  P    +  +       L VA  
Sbjct: 185 FLLTFVVPKITGIFADTKATLPFLTVALL 213


>gi|320155371|ref|YP_004187750.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O]
 gi|319930683|gb|ADV85547.1| type IV fimbrial assembly protein PilC [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LSTMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|217316906|gb|ACK37864.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------VKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4]
 gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 299

 Score = 38.9 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66
           +F     + +D++    R G+  + ++ +            F R+ E        G +  
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGSTQSLEIAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A+    
Sbjct: 213 SALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATE 272

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  + G     ++ L+ 
Sbjct: 273 KLAMPLAGLAGLFMALLLI 291


>gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 303

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++   +K   +F        D++      G     A+ +      + V   FRR+ E   
Sbjct: 149 VRDDARKARVEFGRALGAYTDLVALERLGGSGTRQAMELAAEVGDNWV---FRRLSEELA 205

Query: 61  ----LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
                GL+  +++  +   + L E+   + ++ +  + G  +   L   S  LR      
Sbjct: 206 RSRWSGLAPWDAMHVLADELGLPELDDLADIMRLSKE-GSQVYAQLRARSEGLRSAMLNA 264

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           A  ++ +   + +   I      +  LV   +P  + ++
Sbjct: 265 ALGKSNAAGERMT---IPMALLSIMFLVILITPSLLRLM 300


>gi|167550661|ref|ZP_02344418.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324362|gb|EDZ12201.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|90020993|ref|YP_526820.1| glyceraldehyde-3-phosphate dehydrogenase, type I [Saccharophagus
           degradans 2-40]
 gi|89950593|gb|ABD80608.1| type II secretion system protein [Saccharophagus degradans 2-40]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
             D  N +  + +  ++G+ + + +  +     +   +     ++E+   G + SES+  
Sbjct: 59  RRDLINMVFQLEQLTKSGVSLLEGLKDLRDSVPESYFKDVLAGLVESIEGGKTFSESLKN 118

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR-DRKNMKAKVQALSMEAKASA 130
                       F +++ V  + G  L++ L ++   LR   + + A V+ +   A  + 
Sbjct: 119 FPNDFDT----VFVSLVEVGEESG-ELAKILKDMGETLRWTDEIVAATVKIIMYPAIVAL 173

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            +     F +  LV    P ++  +  D   H +  +A +   I    +
Sbjct: 174 VVFCVTAFLMIYLVPKIIP-FVEEMGGDIPFHTVALIAFSDFFIHYWWL 221


>gi|170681709|ref|YP_001742226.1| type IV pilin biogenesis protein [Escherichia coli SMS-3-5]
 gi|170519427|gb|ACB17605.1| type IV pilus assembly protein PilC [Escherichia coli SMS-3-5]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAYDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGY--MNVLINDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +  + N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKIFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|71064644|ref|YP_263371.1| pilin secretion/fimbrial assembly system protein, PilC
           [Psychrobacter arcticus 273-4]
 gi|71037629|gb|AAZ17937.1| pilin secretion/fimbrial assembly system protein, PilC
           [Psychrobacter arcticus 273-4]
          Length = 407

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P++ +  ++     +P ++    ++      G + + ++ R  RY      
Sbjct: 76  LATMMKAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGNFASALRRHPRYFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F +++    +  G L   L  ++      + +KAK++ 
Sbjct: 132 DLFCSLVD-SGEQSGALETMLERVATYKEKSELLKAKIKK 170


>gi|16763532|ref|NP_459147.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167990016|ref|ZP_02571116.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168243442|ref|ZP_02668374.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450042|ref|YP_002044112.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|16418642|gb|AAL19106.1| putative component in type IV pilin biogenesis [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194408346|gb|ACF68565.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205331469|gb|EDZ18233.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205337541|gb|EDZ24305.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261245375|emb|CBG23164.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991821|gb|ACY86706.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156770|emb|CBW16245.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911112|dbj|BAJ35086.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222282|gb|EFX47354.1| Type IV fimbrial assembly protein PilC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128462|gb|ADX15892.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987095|gb|AEF06078.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|194444325|ref|YP_002039374.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194402988|gb|ACF63210.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+      V  +++F  P +  +    N P   +  G+ A     G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221


>gi|167628390|ref|YP_001678889.1| type ii secretion system f domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167591130|gb|ABZ82878.1| type ii secretion system f domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 22/186 (11%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
                    +   V AG+P+  +++++  +   P     +R  +   L LS  E++   +
Sbjct: 69  RQLSGFCRQLAALVDAGIPMCTSLSMVARRLRPPA---LQRAAQQVALALSQGETLISAL 125

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                     F  ++    + GG L ++L  L+        +  K++A  +     A ++
Sbjct: 126 EQQRHVFPELFVRLVET-GEAGGVLDQSLHRLADHYDKESAITRKIRAALL---YPALVL 181

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRG-----HMLLGVA----------AAFMLIGIMV 178
            +          +  P Y  +L +   G       +L +A               +G   
Sbjct: 182 ATAGGSTVFFFLYVIPAYSALLTSLGMGLPEITRFVLALAKWIGDYGLWMMLSAALGFFG 241

Query: 179 MRLMIN 184
           +R ++ 
Sbjct: 242 LRRLMQ 247


>gi|198245628|ref|YP_002214095.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855657|ref|YP_002242308.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197940144|gb|ACH77477.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206707460|emb|CAR31734.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326621838|gb|EGE28183.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|157147471|ref|YP_001454790.1| type IV pilin biogenesis protein [Citrobacter koseri ATCC BAA-895]
 gi|157084676|gb|ABV14354.1| hypothetical protein CKO_03270 [Citrobacter koseri ATCC BAA-895]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRM 72
           +     +  +   ++AGL +S+ + ++ GQ      ++  + +      G  LS ++++ 
Sbjct: 58  EQSAEIVHQLATLLKAGLTLSEGLTLLAGQHPSRQWQALLQTLAHNLEQGAPLSSALAQW 117

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +  P          +    +L G L E    L+R    +K +  KV+      +    I
Sbjct: 118 PQVFPP-----LYQAMIRTGELTGKLDECCFELARQQNAQKQLADKVKKAL---RYPIII 169

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFML 173
           +      V  +++F  P +  +                     +   G ++  +  A  +
Sbjct: 170 LTMAVMVVFAMLHFVLPEFAAIYRTFNTPLPALTQGIITLAQWSAQWGWLMALLGIATGV 229

Query: 174 IGIMVMRL 181
           I  ++++ 
Sbjct: 230 IYGLIIKK 237



 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           I+  + RAG+P S  +  I    + P       +V    H G  + +++     + P   
Sbjct: 269 ILALTQRAGIPFSQGLESIAETLNCPYWSQRLAQVHRDIHAGKPVWQALKNAGEFSP--- 325

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSR 107
                  + +  +  G L   L NL+R
Sbjct: 326 ---LCIQLVMTGETSGALDAMLHNLAR 349


>gi|149927150|ref|ZP_01915407.1| type II secretion system protein [Limnobacter sp. MED105]
 gi|149824089|gb|EDM83310.1| type II secretion system protein [Limnobacter sp. MED105]
          Length = 412

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 9/141 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVR 74
            +  +   +++G+P+  ++ +I G  +   +   + V+         GL LSE++ +  R
Sbjct: 75  FVRQLAVMIQSGVPLGQSLGLIAGGMTSKSKRAIQTVVRAIRADVESGLKLSEAMRKHPR 134

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                  + F   ++   +  G L  AL  L+  +     ++ KV+   +       +  
Sbjct: 135 CFD----NLFCNTLA-AGENAGELDSALGRLATHIEKTLRIRQKVRKAMIYPSIVVLVAI 189

Query: 135 SLPFCVSTLVYFTSPGYMNVL 155
            +   +   V  +     +  
Sbjct: 190 GVTVGMLLFVLPSFKSIYSQF 210


>gi|315926213|ref|ZP_07922412.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620473|gb|EFV00455.1| type IV pilus assembly protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 362

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             D +   VR+G+ +  A+ ++      D +R+   R       G+SL+ES+      + 
Sbjct: 228 FADSLAMMVRSGVALIPALQIVCQNLQNDFLRARLSRTAALIESGMSLTESL----ERID 283

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           + +  FF   +    +  G+L++ L+  +         + K        + SA +  ++ 
Sbjct: 284 VLDAEFFQ--LIQVGESAGSLAQVLSKAAAYYHKTYQKRFK--------RLSAVLEPAVL 333

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
             V  LV      +M++L     G+  L 
Sbjct: 334 VIVGVLVAVVVLSFMSILYAIYTGYASLL 362


>gi|261856174|ref|YP_003263457.1| type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
 gi|261836643|gb|ACX96410.1| Type II secretion system F domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 412

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A+ ++   +   P++     V      GL+L++++ +  +Y      
Sbjct: 82  LATMMQAGLPIVQALDIMAQSAEKVPMKELISTVKNDVESGLTLADAMDKHRKYFD---- 137

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G+L   L  ++      +++K K++           ++       S
Sbjct: 138 ELFVNLVR-AGEDSGSLELVLDRIAVYKEKSESLKGKIKKALF---YPIAVVVVAFIVTS 193

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+ F  P +  +     +G      A    +IGI
Sbjct: 194 ILLIFVIPQFQELF----QGFGATLPAFTLFVIGI 224


>gi|110803628|ref|YP_699547.1| type II secretion system protein F [Clostridium perfringens SM101]
 gi|110684129|gb|ABG87499.1| bacterial type II secretion system protein F [Clostridium
           perfringens SM101]
          Length = 401

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLASSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  +S        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMSEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|20090162|ref|NP_616237.1| hypothetical protein MA1298 [Methanosarcina acetivorans C2A]
 gi|19915147|gb|AAM04717.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 645

 Score = 38.9 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ-HLG 62
           I+ R  +   +F ++L ++ R +  G    +A A          +   F  +      + 
Sbjct: 391 IRDRIKQMELEFADSLFVLGRRISEGKAPEEAFAHTSRTMEGSKIGEAFEEISMNLFSMR 450

Query: 63  LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109
            +L ++I               +    +  F+  +    +  G     L++ L  LS + 
Sbjct: 451 TNLRDAIFDEEFGAFRHIYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELSAV- 508

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              + ++  +  ++   +++A I   L   ++  + 
Sbjct: 509 --EERIRRSLYDVTSTMRSTAAIFAPLIAGITLALS 542


>gi|217316901|gb|ACK37860.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|217316896|gb|ACK37856.1| PilC [Vibrio vulnificus]
          Length = 408

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYPCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|312876911|ref|ZP_07736887.1| Type II secretion system F domain [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796322|gb|EFR12675.1| Type II secretion system F domain [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 403

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R    + +       +   + AG+P+  A++VIV Q     +      + ++   G  LS
Sbjct: 57  RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          ++   +L G+L + L  ++        +K K+    +  
Sbjct: 117 RALAEKGECFPE-----ILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +   +   +   V  T  G  + L
Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDEL 200


>gi|312793028|ref|YP_004025951.1| type II secretion system f domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180168|gb|ADQ40338.1| Type II secretion system F domain [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 403

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLS 66
           R    + +       +   + AG+P+  A++VIV Q     +      + ++   G  LS
Sbjct: 57  RKKLSIKELSMFCRQLSTMLMAGIPLITALSVIVEQFKGRAMGKVLEDIYKSVQSGSMLS 116

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++      P          ++   +L G+L + L  ++        +K K+    +  
Sbjct: 117 RALAEKGECFPE-----ILINMTEAGELSGSLDKTLERMATHFEKELKLKQKIVNALIYP 171

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                +   +   +   V  T  G  + L
Sbjct: 172 AIVLLVAFGVLVIMLVYVIPTFVGIFDEL 200


>gi|238911200|ref|ZP_04655037.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           I+      V  +++F  P +  +    N P   +  G+ A     G     L++
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQW-GAAWGWLIL 221


>gi|84622429|ref|YP_449801.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366369|dbj|BAE67527.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 405

 Score = 38.9 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRDK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|168230423|ref|ZP_02655481.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194468768|ref|ZP_03074752.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455132|gb|EDX43971.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205334971|gb|EDZ21735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|21392773|ref|NP_652852.1| hypothetical protein BXA0087 [Bacillus anthracis str. A2012]
 gi|20520160|gb|AAM26042.1| conserved hypothetical protein [Bacillus anthracis str. A2012]
          Length = 229

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 122 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 180

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
             +     +        +   EV+ F+  +    + G
Sbjct: 181 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 217


>gi|330889707|gb|EGH22368.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|301058142|ref|ZP_07199194.1| general secretion pathway protein F [delta proteobacterium NaphS2]
 gi|300447774|gb|EFK11487.1| general secretion pathway protein F [delta proteobacterium NaphS2]
          Length = 409

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLPV  A+++++  +  D  +     +++T   G  LS+++++  R       
Sbjct: 79  LATLLEAGLPVDRALSLLIESAENDRFKKVIGDILKTVQGGGYLSDALAKHPR-----AF 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S F   +    + GG L   L+ L   L   + +K  ++          +++      + 
Sbjct: 134 SSFYVSMVRAGEAGGVLEAVLSRLGEFLESAQELKDYIK---SAMVYPIFLVCVGGLSII 190

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P +  + 
Sbjct: 191 VLLTFVIPKFSIIF 204


>gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 268

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 7   KRTAKFLDDFPNAL----DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++  +F DD    L     ++      G+   D + +++  +   +R    R  +     
Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119
            +L+++++ M +   L E+   ++V     +  G +L   L  ++   R +   N++ + 
Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +   M          +LP      +      +
Sbjct: 228 ERKRMSVLFEVIAFIALPSIFLVGILILMRAW 259


>gi|168820862|ref|ZP_02832862.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205342429|gb|EDZ29193.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084388|emb|CBY94181.1| General secretion pathway protein F Cholera toxin secretion protein
           epsF [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
             +  P      + T+I       G L+  LA+    L  ++  + ++     +A +  A
Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
            I+      V  +++F  P +  +    N P 
Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|73671137|ref|YP_307152.1| hypothetical protein Mbar_A3709 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398299|gb|AAZ72572.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 646

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVI-ETQHLG 62
           I+ R  K   +F ++L ++ R +  G    +A A          +   F+ +      + 
Sbjct: 392 IRDRIKKMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAFQEISMNLLSMR 451

Query: 63  LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109
            +L  +I               +    +  F+  +    +  G     L++ L  L  + 
Sbjct: 452 TNLKAAIFDEDFGAFRHVYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELGTV- 509

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              + ++  +  ++   +++A I   L   ++  + 
Sbjct: 510 --EERIRRSLYDVTSTMRSTAVIFAPLIAGITLALS 543


>gi|228950020|ref|ZP_04112208.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809667|gb|EEM56100.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27]
 gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27]
 gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27]
          Length = 441

 Score = 38.9 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL +  A+A++  Q+ +   R   ++V      G++ SE++S+          
Sbjct: 109 LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 162

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L   L  L+  L     ++ K+++              + + + 
Sbjct: 163 SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFAVGVAYFLL 222

Query: 142 TLVYFTSPGYMNVLIN 157
           T +    P +  +L +
Sbjct: 223 TGIV---PQFAQILTD 235


>gi|297570328|ref|YP_003691672.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926243|gb|ADH87053.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 404

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+ ++ ++ ++  QS  P ++    R++     G +L  +  R  +       
Sbjct: 75  LRTLLKAGVAITRSLEILQDQSEHPQIKRSLERMVTDIEEGATLEAAFRRHPKIFS---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
             + ++I    +  G+L E L  LS IL     +K  +       K 
Sbjct: 131 KLYCSMIR-AGEASGSLPEVLDRLSYILEHENKVKNDINTALAYPKI 176


>gi|288937074|ref|YP_003441133.1| general secretion pathway protein F [Klebsiella variicola At-22]
 gi|288891783|gb|ADC60101.1| general secretion pathway protein F [Klebsiella variicola At-22]
          Length = 404

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80
           +   V AG+P+  A+  +  Q    P+R+    V      G SL+E++            
Sbjct: 73  LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 126

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G+L   L  L+     R+ ++A++    ++A     ++  +   V
Sbjct: 127 FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARL----LQAMIYPIVLTLVAISV 182

Query: 141 STLVYFT 147
             ++  T
Sbjct: 183 IAILLST 189


>gi|110834174|ref|YP_693033.1| general secretion pathway protein F [Alcanivorax borkumensis SK2]
 gi|110647285|emb|CAL16761.1| General secretion pathway protein F [Alcanivorax borkumensis SK2]
          Length = 405

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GLPV  A++ +  Q++ D +      V      G SL+ S     R  P  E+
Sbjct: 74  LATLLKSGLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLAHSFESFPRAFP--EM 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L + L  L+  L  R +    V          A+I+      + 
Sbjct: 132 YRATVA---AGEQSGHLEQVLEQLADYLETRHDTGRSVAQ---AMIYPAFIMVFASIVIM 185

Query: 142 TLVYFTSPGYMNVL 155
            ++ F  P  + V 
Sbjct: 186 LMMTFVVPKLVAVF 199


>gi|251790889|ref|YP_003005610.1| type II secretion system protein [Dickeya zeae Ech1591]
 gi|247539510|gb|ACT08131.1| type II secretion system protein [Dickeya zeae Ech1591]
          Length = 401

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+ +A+  + GQ+  P V      V E    G+S ++++  +         
Sbjct: 72  LASLLDAGIPLEEALTTLAGQADKPAVGVVLNAVREQLIAGVSFAQALQTLP-----HSF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +     +    +  G L+  L  L+  L  R+  K 
Sbjct: 127 NRLYCAMVAAGEATGGLALVLIRLADYLDQRQKTKN 162


>gi|147677471|ref|YP_001211686.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
 gi|146273568|dbj|BAF59317.1| type II secretory pathway, component PulF [Pelotomaculum
           thermopropionicum SI]
          Length = 404

 Score = 38.9 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 11/156 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A+ ++  Q+    +R     +      G + SE++       P    
Sbjct: 77  LATMLQAGVPLLQALHILTRQTGHKGLRDSLSVITRLLEEGRTFSEALRMFPAIYP---- 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 ++   ++ G L  AL NL+       N+  K++         A ++ +    VS
Sbjct: 133 -GIMVSMAEAGEVTGRLDYALENLAGHFEREHNISEKIK---SAMVYPAVLVATGIAAVS 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            +     P +  +L  D  G  L  V  A M +   
Sbjct: 189 IVFILVVPSFKAML--DTLGVELPAVTRAVMSVSAF 222


>gi|322615964|gb|EFY12881.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620748|gb|EFY17608.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623900|gb|EFY20737.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627348|gb|EFY24139.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630655|gb|EFY27419.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638125|gb|EFY34826.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640611|gb|EFY37262.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645604|gb|EFY42131.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648101|gb|EFY44568.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656866|gb|EFY53152.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657423|gb|EFY53695.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663742|gb|EFY59942.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666575|gb|EFY62753.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672266|gb|EFY68378.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676422|gb|EFY72493.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679485|gb|EFY75530.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686186|gb|EFY82170.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195030|gb|EFZ80216.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200061|gb|EFZ85148.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201118|gb|EFZ86187.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209515|gb|EFZ94448.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212233|gb|EFZ97057.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216538|gb|EGA01264.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219887|gb|EGA04365.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225833|gb|EGA10053.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228625|gb|EGA12754.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236761|gb|EGA20837.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239738|gb|EGA23785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242214|gb|EGA26243.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249362|gb|EGA33278.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252305|gb|EGA36156.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256605|gb|EGA40335.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262974|gb|EGA46524.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265459|gb|EGA48955.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271753|gb|EGA55171.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
             +  P      + T+I       G L+  LA+    L  ++  + ++     +A +  A
Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
            I+      V  +++F  P +  +    N P 
Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|296141574|ref|YP_003648817.1| type II secretion system F domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296029708|gb|ADG80478.1| Type II secretion system F domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 197

 Score = 38.9 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           A D+    +RAG+P +DA   +   ++  + +   R  E   LG     +          
Sbjct: 57  AYDLFAVCLRAGMPTADAARAVASTAAPALAAVLGRAAEMLALGSDPDTAW-----RTES 111

Query: 79  QEVSFFSTV--ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +    +    +   ++ G + +  LA+L+R     +  +A+ +A++   +A   + G L
Sbjct: 112 DDAQVIALTRMLRRSARAGSSPAVGLADLART----ERAQAEDRAVAAGERAGVMVAGPL 167

Query: 137 PFCVSTLV 144
             C     
Sbjct: 168 GLCFLPAF 175


>gi|330972856|gb|EGH72922.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|301068122|ref|YP_003786893.1| hypothetical protein BACI_pCIXO100800 [Bacillus anthracis CI]
 gi|300379212|gb|ADK08115.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|306819826|ref|ZP_07453480.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552073|gb|EFM40010.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 341

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 28  RAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           ++GLP+ +A++V   + S P ++     + E+   G  + E++ +   +       + + 
Sbjct: 23  KSGLPLDEAMSVFTDEMSTPTLKKIALSIKESVDNGEPIYEAVKKHDEFP-----KYMTG 77

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
           ++ +    G NL E L+ LS   ++ + +  KV   S        + G +   ++ LV  
Sbjct: 78  MMEIAYNTG-NLEEELSRLSTYYQEVERLNQKV---SNAVVYPVILTGLMLIIITFLVVK 133

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             P +  ++  D  G  +    A  + IG+ +
Sbjct: 134 VIPMFSEII--DSIGADIPNTTAVLISIGLAL 163


>gi|205351483|ref|YP_002225284.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271264|emb|CAR36052.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626510|gb|EGE32853.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 400

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAILHFVLPEFAAIYRSFNTPL 199


>gi|1174586|sp|P45793|TAPC_AERHY RecName: Full=Type IV pilus assembly protein tapC
 gi|663117|gb|AAC43997.1| TapC [Aeromonas hydrophila]
 gi|1588984|prf||2209417C leader peptidase IV
          Length = 413

 Score = 38.9 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  ++ +I        +R    ++      G  +SE++ R  R+      
Sbjct: 82  ITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRH-----F 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++         A +I       S
Sbjct: 137 DALYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPAMVILVAIVVTS 193

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 194 ILLLFVIPQFEDIF 207


>gi|312138012|ref|YP_004005348.1| type ii secretion system integral membrane subunit [Rhodococcus
           equi 103S]
 gi|311887351|emb|CBH46662.1| putative type II secretion system integral membrane subunit
           [Rhodococcus equi 103S]
          Length = 199

 Score = 38.5 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D++   ++AGLPV DAVA +   + DP+    RR  +   LG   + +   +        
Sbjct: 61  DLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASE---PA 117

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               + +    ++ G  LS A+A+L+      +  +A+ +A++   KA   I G L  C 
Sbjct: 118 TEALARMARRSARSGAALSSAMADLATQ----QRTEAEDRAIAAVEKAGVLIGGPLGLCF 173

Query: 141 STLV 144
               
Sbjct: 174 LPAF 177


>gi|125973620|ref|YP_001037530.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|281417825|ref|ZP_06248845.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
 gi|125713845|gb|ABN52337.1| type II secretion system protein [Clostridium thermocellum ATCC
           27405]
 gi|281409227|gb|EFB39485.1| Type II secretion system F domain protein [Clostridium thermocellum
           JW20]
          Length = 404

 Score = 38.5 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+++A+ V+  Q+++  +R     V +    G++LS ++ +  R  P        
Sbjct: 77  LEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQHPRIFP----EMLI 132

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144
            ++    ++ G L      ++        +  K++ AL+     +   I  +   +  +V
Sbjct: 133 NMVE-AGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPIIVTVVAIAVIMILMVAVV 191

Query: 145 YFTSPGYMNVL 155
               P ++ VL
Sbjct: 192 ----PTFVKVL 198


>gi|325913939|ref|ZP_08176297.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539851|gb|EGD11489.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
           35937]
          Length = 405

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 12/153 (7%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     + +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKSRRVIGDIRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + +K K
Sbjct: 112 VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           V    +     A ++  +   +  L+ +  P +
Sbjct: 167 VINALI---YPAILLAVVGCALLFLLGYVVPQF 196


>gi|325266599|ref|ZP_08133276.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC
           33394]
 gi|324982042|gb|EGC17677.1| type IV pilin biogenesis protein PilC [Kingella denitrificans ATCC
           33394]
          Length = 427

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIET 58
           +  +   R  K            +   ++AGLP+  A  ++    S+  V      +   
Sbjct: 71  LNKMKSAREKKITQQDITVFTRQLSTMMKAGLPLMQAFDIVAKGHSNAAVTRLLTEIRND 130

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SL  S S+  +Y        F   +    + GG L   L  L+      + +K K
Sbjct: 131 VEQGESLGTSFSKHPKY-----FDKFYCNLVAAGEAGGVLEGLLDKLALYKEKTQAIKKK 185

Query: 119 VQA 121
           V++
Sbjct: 186 VKS 188


>gi|10956308|ref|NP_052757.1| hypothetical protein pxo1_61 [Bacillus anthracis]
 gi|227811507|ref|YP_002811518.1| hypothetical protein BAMEG_A0082 [Bacillus anthracis str. CDC 684]
 gi|4894277|gb|AAD32365.1| pXO1-61 [Bacillus anthracis]
 gi|227007935|gb|ACP17677.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
          Length = 236

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
             +     +        +   EV+ F+  +    + G
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 224


>gi|227893242|ref|ZP_04011047.1| competence protein [Lactobacillus ultunensis DSM 16047]
 gi|227864925|gb|EEJ72346.1| competence protein [Lactobacillus ultunensis DSM 16047]
          Length = 333

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69
            +     LD +  S+  G  + +++ +         P R E  +++ +    G S S  +
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKREELMQKLADQMKEGASFSTEL 69

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++           FS     Q       GNL+E L  L+ + R ++    K++    E 
Sbjct: 70  VKL----------VFSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   +   +  +  F S  + +   ++  G +++      ++ GI     ++N 
Sbjct: 117 SYPLVLAIMMVILLVFMQSFVSTQFSS--TSEHSGDIVMLGLIVLVMTGIYFFVRIVNL 173


>gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1]
 gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1]
          Length = 332

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 53/142 (37%), Gaps = 2/142 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL-GLSL 65
           R      + P     +    R G+PVS  +  +   +    +R E   +     L G + 
Sbjct: 134 RKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVASLKIFKALREEAEMIRTKIRLLGKNP 193

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            +++   V   P      F    +   ++G ++   L   ++ L +R+    ++ A  M 
Sbjct: 194 LDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVIHYLEIRTQDLFERRLNDIRLLAERMT 253

Query: 126 AKASAWIIGSLPFCVSTLVYFT 147
                +++ ++   +   ++FT
Sbjct: 254 LYLEIYLVVAVIATIVFYIFFT 275


>gi|325675225|ref|ZP_08154910.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus equi ATCC 33707]
 gi|325553931|gb|EGD23608.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus equi ATCC 33707]
          Length = 198

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           D++   ++AGLPV DAVA +   + DP+    RR  +   LG   + +   +        
Sbjct: 60  DLLAACLKAGLPVPDAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASE---PA 116

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
               + +    ++ G  LS A+A+L+      +  +A+ +A++   KA   I G L  C 
Sbjct: 117 TEALARMARRSARSGAALSSAMADLATQ----QRTEAEDRAIAAVEKAGVLIGGPLGLCF 172

Query: 141 STLV 144
               
Sbjct: 173 LPAF 176


>gi|71736449|ref|YP_275239.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557002|gb|AAZ36213.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323741|gb|EFW79825.1| general secretion pathway protein F [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327883|gb|EFW83888.1| general secretion pathway protein F [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|17548688|ref|NP_522028.1| putative general secretion pathway GSPF-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
 gi|17430936|emb|CAD17618.1| putative general secretion pathway gspf-related transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 397

 Score = 38.5 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +   ++ R  K           +   +RAGL VS+A+  +  +   P    +R++ +   
Sbjct: 49  LARSLQSRRRKVDAGL--VCIELGGLLRAGLTVSEALDSLAHRDDHPNVGVYRQLYDGLL 106

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            GL LSES+ ++    P          I    + G  + +AL   ++  + ++ ++ KV 
Sbjct: 107 SGLPLSESMKQVEGGFP----GILVAAIQANERSG-RIPDALDEYAKYAQAQEALRKKV- 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                A   A +IG     V  L+ +  P +   ++ D     + G     + +G  +
Sbjct: 161 --VSAAVYPATVIGFGLLVVLFLLAYVIPRF--AMVYDGTAMQMSGPTRILLAVGHFI 214


>gi|326392591|ref|ZP_08213935.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325991368|gb|EGD50016.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 144

 Score = 38.5 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
            P  +D+      A +P+ D   +    +    VR+   ++     +      ++ R + 
Sbjct: 1   MPEIVDLFELGAAADVPLEDIFLITAQSAQAKEVRNALTKLAAEYIMTKEKEVALKRFIN 60

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + L E +  +  +    + G  L E L+ LS  L +    K   Q  SME K  A +  
Sbjct: 61  EVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAAVFF 119

Query: 135 SLPFCVSTLVY 145
            +   V+  +Y
Sbjct: 120 LMASIVTLYIY 130


>gi|298487498|ref|ZP_07005542.1| General secretion pathway protein F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158013|gb|EFH99089.1| General secretion pathway protein F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330987893|gb|EGH85996.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|256003440|ref|ZP_05428431.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|255992730|gb|EEU02821.1| type II secretion system protein [Clostridium thermocellum DSM
           2360]
 gi|316940138|gb|ADU74172.1| Type II secretion system F domain [Clostridium thermocellum DSM
           1313]
          Length = 404

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+++A+ V+  Q+++  +R     V +    G++LS ++ +  R  P        
Sbjct: 77  LEAGVPIANALDVLREQTTNRTLRECLDDVYDNIQKGIALSNAMRQHPRIFP----EMLI 132

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSLPFCVSTLV 144
            ++    ++ G L      ++        +  K++ AL+     +   I  +   +  +V
Sbjct: 133 NMVE-AGEISGQLDLVFKRMAIQFEKENKLNQKIRGALTYPIIVTVVAIAVIMILMVAVV 191

Query: 145 YFTSPGYMNVL 155
               P ++ VL
Sbjct: 192 ----PTFVKVL 198


>gi|261820714|ref|YP_003258820.1| general secretion pathway protein F [Pectobacterium wasabiae
           WPP163]
 gi|261604727|gb|ACX87213.1| general secretion pathway protein F [Pectobacterium wasabiae
           WPP163]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +      V      G SL++++            
Sbjct: 77  LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|118443786|ref|YP_877676.1| pilin biogenesis protein [Clostridium novyi NT]
 gi|118134242|gb|ABK61286.1| probable pilin biogenesis protein [Clostridium novyi NT]
          Length = 402

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   LD       AG  + ++V ++  Q+ +P ++     V E    G +LS  + 
Sbjct: 68  FCRQFATLLD-------AGADILNSVDLLRKQAENPKLKDSLEVVYEEIQKGYTLSSCMD 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +     P         ++    + G  L   +  ++        + +K++   M      
Sbjct: 121 KFKDVYP----KLLVNMVRSGEETG-QLGSVMEKMAEQYEREHRINSKIKGAFM---YPI 172

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +I      V+ L+    P ++ + 
Sbjct: 173 ILIIVCVSAVTFLLTCVMPTFVQMF 197


>gi|186680664|ref|YP_001863860.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
 gi|186463116|gb|ACC78917.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
          Length = 407

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + AG+ +  ++ V+  Q S+  ++     +      G++LSES+ +           
Sbjct: 77  AVLMNAGVAIVRSLGVLSEQCSNTKLKQALIEISNDVQSGMNLSESMRKHPDC-----FD 131

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    ++GG L E L  L+++L D   ++ ++++         +I  S+   ++ 
Sbjct: 132 GLYVSMIQAGEVGGVLDEVLNRLAKLLEDVARLQNQIKSALSYPTVVGFIAVSIFLGMTI 191

Query: 143 LVYFTSPGYM 152
            +        
Sbjct: 192 FLIPVFAKIF 201


>gi|290512495|ref|ZP_06551861.1| general secretion pathway protein F [Klebsiella sp. 1_1_55]
 gi|289774836|gb|EFD82838.1| general secretion pathway protein F [Klebsiella sp. 1_1_55]
          Length = 337

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80
           +   V AG+P+  A+  +  Q    P+R+    V      G SL+E++            
Sbjct: 6   LATLVAAGIPLEKALDAVAQQCEKAPLRTLMAGVRSKVLEGHSLAEAMR------GYPAC 59

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G+L   L  L+     R+ ++A++Q    +A     ++  +   V
Sbjct: 60  FDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLQ----QAMIYPIVLTLVAISV 115

Query: 141 STLVYFT 147
             ++  T
Sbjct: 116 IAILLST 122


>gi|283455154|ref|YP_003359718.1| type II secretion system protein, pilus assembly [Bifidobacterium
           dentium Bd1]
 gi|283101788|gb|ADB08894.1| type II secretion system protein, pilus assembly [Bifidobacterium
           dentium Bd1]
          Length = 171

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+ V+              V    + G+   ++       
Sbjct: 39  MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 91

Query: 76  MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132
            P   +++    V +     G +    L      L   +R  ++         AK S  +
Sbjct: 92  WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERD------AAKLSIRL 145

Query: 133 IGSLPFCVSTLVYFT 147
           +     C        
Sbjct: 146 LLPTGLCFLPAFIAI 160


>gi|218698526|ref|YP_002406155.1| type IV pilin biogenesis protein [Escherichia coli IAI39]
 gi|218368512|emb|CAR16247.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli IAI39]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 30/184 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q SS   ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHSSKQWQALLQSLAYDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                  G +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLASFSGEWGWLLVLFGFLLAIANK 232

Query: 177 MVMR 180
           ++MR
Sbjct: 233 LLMR 236


>gi|148555497|ref|YP_001263079.1| type II secretion system protein [Sphingomonas wittichii RW1]
 gi|148500687|gb|ABQ68941.1| type II secretion system protein [Sphingomonas wittichii RW1]
          Length = 406

 Score = 38.5 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 11/175 (6%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHL 61
            L ++R              I   V + + +  A+ ++  Q+    +RS    V      
Sbjct: 57  RLFRRRVGA--RALATVTRQIATLVTSEVNIEQALKLVAEQAEGAALRSLLLDVRGAILD 114

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G S + ++      +       F T      +  G L++ LA+L+  + +R+  + K+Q 
Sbjct: 115 GYSFAAAL-----RLHPATFPEFYTASVAAGEQAGRLAQVLAHLADFVENRQRNQQKIQL 169

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             +     A +   +   ++ L+ +  P  + V I+       L  A   +  G+
Sbjct: 170 ALLYPALLAVVSFGM---MALLMVYVVPDIVRVFISRGAELPFLTRALIAISGGL 221


>gi|302184976|ref|ZP_07261649.1| general secretion pathway protein F [Pseudomonas syringae pv.
           syringae 642]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|269961262|ref|ZP_06175629.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3]
 gi|269834023|gb|EEZ88115.1| type IV pilin biogenesis protein PilC [Vibrio harveyi 1DA3]
          Length = 407

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    V      G  +S+++            
Sbjct: 76  IATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASTHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNLS+    L+      + ++AKV          A I  ++   V+
Sbjct: 131 DPLYTDLIATGEQSGNLSQVFERLATYREKSEQLRAKV--------IKALIYPAMVVLVA 182

Query: 142 TLVYFT 147
             V + 
Sbjct: 183 LGVSYL 188


>gi|21228399|ref|NP_634321.1| hypothetical protein MM_2297 [Methanosarcina mazei Go1]
 gi|20906873|gb|AAM31993.1| conserved protein [Methanosarcina mazei Go1]
          Length = 645

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVI-ETQHLG 62
           I+ R  +   +F ++L ++ R +  G    +A A          +   +  +      + 
Sbjct: 391 IRDRIKQMEQEFADSLFVLGRRISEGKAPEEAFAHTARTMEGSKIGEAYEGISMNLLSMR 450

Query: 63  LSLSESISR---------MVRYMPLQEVSFFSTVISVQSQLGG----NLSEALANLSRIL 109
            +L +++               +    +  F+  +    +  G     L++ L  LS + 
Sbjct: 451 TNLKDAVFDEEFGAFRHVYSERIRNT-MLLFTESVHKNHEAAGASIIKLADHLKELSDV- 508

Query: 110 RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
              + ++  +  ++   + +A I   L   ++  + 
Sbjct: 509 --EERIRRSLYDVTSTMRTTAAIFAPLIAGITLALS 542


>gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 403

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R    + D           + AG+P+  A+ VI  Q            + +    G 
Sbjct: 54  VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS +++      P         +I    ++ G++ +AL  ++        ++ K+    
Sbjct: 114 MLSRALTEKAECFPS----ILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     A +I      +  ++ F  P ++ + 
Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197


>gi|66046379|ref|YP_236220.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|289679112|ref|ZP_06500002.1| general secretion pathway protein F [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257086|gb|AAY38182.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|56421162|ref|YP_148480.1| hypothetical protein GK2627 [Geobacillus kaustophilus HTA426]
 gi|56381004|dbj|BAD76912.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 403

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L  F   L      VRAG+ + D++ ++  Q+    +      + +    G  LS + ++
Sbjct: 62  LQHFVVFLRQFATLVRAGVTIVDSIHILAEQTESKALARALDDMEQHLREGNPLSAAAAK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA- 130
             R  P      F  ++    +  G L E L  L+         + K+ +      A A 
Sbjct: 122 HPRIFP----PLFVNMVR-AGEASGTLDETLDRLADHFEKVHRTRQKIVSALAYPVAVAI 176

Query: 131 --------WIIGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
                    ++  +P  V     F +  P     ++               + IG+ ++
Sbjct: 177 IAVAVVIFLLVSVVPTFVDMFADFHAELPAITKFVLKASAFMQHYWWMITLLAIGVFLL 235


>gi|50122030|ref|YP_051197.1| general secretion pathway protein F [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612556|emb|CAG76006.1| general secretion pathway protein F [Pectobacterium atrosepticum
           SCRI1043]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +      V      G SL++++            
Sbjct: 77  LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|77458199|ref|YP_347704.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77382202|gb|ABA73715.1| putative general secretion pathway protein F [Pseudomonas
           fluorescens Pf0-1]
          Length = 395

 Score = 38.5 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 66/179 (36%), Gaps = 12/179 (6%)

Query: 2   KHLIKKRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +H    R +K    +       +   + AGLP+ DA+  +   +++   R     ++   
Sbjct: 44  RHWRSLRLSKRETFNLVLFSQELTTLLNAGLPLIDALESLAEKETAPAARKTLSELVRLL 103

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G S S+++ ++    P          +   S+  G + +AL       +    ++ K+
Sbjct: 104 YEGKSFSQALGQLSAVFPP-----LYVALVQSSEKTGAVGDALGRYVSYRQRMDEVRQKI 158

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            + S+       + G +   +   V    P +  V   +  G  L  ++   M  G+ +
Sbjct: 159 VSASIYPLLLLVVGGGVVLFLMGYVV---PRFSLVF--EGLGSNLPWLSQILMSSGMFL 212


>gi|196248903|ref|ZP_03147603.1| type II secretion system protein [Geobacillus sp. G11MC16]
 gi|196211779|gb|EDY06538.1| type II secretion system protein [Geobacillus sp. G11MC16]
          Length = 342

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + R +  G P+  A+  +  Q+    R E  R ++    GL L  +I  +        V 
Sbjct: 18  LGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP-------VD 70

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +  +   ++  G+L   +A     L  +     +++      +   ++   L   +  
Sbjct: 71  RLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRF---GRYPLFLFALLIVMLLL 127

Query: 143 LVYFTSPGY 151
           +  +  P +
Sbjct: 128 MERWLLPQF 136


>gi|146329906|ref|YP_001210009.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus
           VCS1703A]
 gi|790210|gb|AAB65806.1| FimO [Dichelobacter nodosus]
 gi|146233376|gb|ABQ14354.1| type IV fimbrial biogenesis protein FimO [Dichelobacter nodosus
           VCS1703A]
          Length = 407

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP--VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   +RAG+PV  A+ ++      P  ++     V E    G + +E++S      PL  
Sbjct: 76  MSTMLRAGMPVLRALDLVGQSIEKPKAMQEMVFDVHEKIQNGATFAEALSSH----PLH- 130

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
                  +    +  G L + + +++  L   + +K K++      +  A ++       
Sbjct: 131 FDSLYVSLVAAGEEAGMLDKTMDDIAVNLEKGEAVKKKIKKAL---QYPAIVMLFAIVVT 187

Query: 141 STLVYFTSPGYMNVLINDPRG------HMLLGVAAAFMLIGIMVMRLMI 183
           + L+    P           G       M++ ++  F+  GI  + L++
Sbjct: 188 AVLMIKVVP-VFAEFFESNGGTLPAPTQMVVKISHFFVNKGIYFLMLIV 235


>gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614]
 gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614]
          Length = 303

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 10/154 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH---- 60
            KK   +F       +D++   VR G     A+           +  F+R+         
Sbjct: 154 AKKARIEFSRALGAYIDMVATGVRDGSSGQQALRSAAEVGD---KWVFKRIESELRRARY 210

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +  +  +S+  +   + + E+   + ++    Q G + ++   NL       ++     +
Sbjct: 211 MTRAPWDSLHGLADELAVPELDDLADIM---QQSGQDGAQIYNNLRARAAALRSAMLSAE 267

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
                A +    I +    +  +    +P  +  
Sbjct: 268 VGKANATSERMYIPASLLGIVFMAILVTPSLLRF 301


>gi|313497009|gb|ADR58375.1| PilC [Pseudomonas putida BIRD-1]
          Length = 422

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58
           L K+R       F              ++AG+P+  A  V+     D    +   R+ + 
Sbjct: 76  LPKRREKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 128

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              GL L++++ R   +      + +  ++ V  Q G  L   L  L+ +L  R+ +  K
Sbjct: 129 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 183

Query: 119 VQA 121
           V+ 
Sbjct: 184 VRK 186


>gi|307131915|ref|YP_003883931.1| general secretion pathway protein F [Dickeya dadantii 3937]
 gi|306529444|gb|ADM99374.1| General secretion pathway protein F [Dickeya dadantii 3937]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P + +    V      G SL+E++            
Sbjct: 77  LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|295109281|emb|CBL23234.1| Type II secretory pathway, component PulF [Ruminococcus obeum
           A2-162]
          Length = 404

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 64/157 (40%), Gaps = 9/157 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D        V   +AG+P+ +A+ ++  Q+ +  ++     V+     G +L++S++ +
Sbjct: 63  RDLSVFCRQFVSITQAGVPMKEALQMMTEQTENKWLKKATADVLVNVEKGNTLADSMASI 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P   V+  +       +  G+L  +   ++        +KA ++  ++       +
Sbjct: 123 PDIFPPMLVNMVA-----AGESSGSLEMSFNRMATHFEKEAKLKATIRKATI---YPIIL 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           I ++   ++ ++ +  P ++++  +       L +  
Sbjct: 175 ICAVIGVIAVMLLYVIPIFIDMFADLDVEMPALTMGV 211


>gi|253988608|ref|YP_003039964.1| type IV pilin biogenesis protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780058|emb|CAQ83219.1| protein transport protein hofc [Photorhabdus asymbiotica]
          Length = 399

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYM 76
           N +  +   + +G+P+ + + +++ + S+P+       + +    G S S S+       
Sbjct: 63  NFIRQLATLLSSGMPLLNCLNILIRECSNPLWHCVLSDISKRITRGESFSTSLKNYPFLF 122

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGS 135
           P         V        G L+  L    ++L  ++  + K+Q    +A +    II  
Sbjct: 123 P-PLFYQLIAV--------GELTGQLEICCQLLIKQQEQQDKLQKKIAKALRYPLIIIVV 173

Query: 136 LPFCVSTLVYFTSPGY 151
               +  ++ F  P +
Sbjct: 174 ANIIILLMLIFVLPEF 189


>gi|227114131|ref|ZP_03827787.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +      V      G SL++++            
Sbjct: 77  LATLVAASLPLEEALDAVAKQSEKPQLSQLMAAVRSKVMEGHSLADAMKCFP-----SSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|204927253|ref|ZP_03218455.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323918|gb|EDZ09113.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASA 130
             +  P      + T+I       G L+  LA+    L  ++  + ++     +A +  A
Sbjct: 117 WPQVFP----PLYQTMIR-----TGELTGKLADCCFELARQQKAQRQITVSVKKALRYPA 167

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
            I+      V  +++F  P +  +    N P 
Sbjct: 168 IILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
 gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein
           [Rhodococcus erythropolis SK121]
          Length = 299

 Score = 38.5 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66
           +F     + +D++    R G+  + ++ +            F R+ E        G +  
Sbjct: 156 EFAQALSSYIDLVALCRRGGVGSTQSLEIAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A+    
Sbjct: 213 SALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAAVEATE 272

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  + G     ++ L+ 
Sbjct: 273 KLAMPLAGLAGLFMALLLI 291


>gi|229073961|ref|ZP_04207037.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
 gi|228709146|gb|EEL61244.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
          Length = 288

 Score = 38.5 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|228938212|ref|ZP_04100827.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971090|ref|ZP_04131723.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788613|gb|EEM36559.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821445|gb|EEM67455.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 288

 Score = 38.5 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|160931311|ref|ZP_02078711.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
 gi|156869695|gb|EDO63067.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
          Length = 297

 Score = 38.5 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDAPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q + G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|325569593|ref|ZP_08145640.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325157149|gb|EGC69314.1| type IV pilus assembly protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 403

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 31/188 (16%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L      + +G+ + DA  ++  Q   P  +     V +    G  LSE+        P+
Sbjct: 69  LRQFSTLIASGITIVDASRMLEEQQKKPNFKRILGEVRDDIDGGRPLSEAYKAHPNAFPV 128

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                 ++VI+V    G      L      + D     A+ ++  + A     I+  + F
Sbjct: 129 ----LLTSVITVSEMSGS-----LEKNLTDMADYYEKSAENRSGLVTAMVYPIILILMTF 179

Query: 139 CVSTLVYFTSPGYMNVLIND--------------------PRGHMLLGVAAAFMLIGIMV 178
            V  ++          +                        RG  +L V    ++IG  +
Sbjct: 180 VVGIILLVMIVPMFVEVFESFDTDLPRITVITMAISDFLQTRGW-VLAVFIVGIMIGFWL 238

Query: 179 MRLMINFD 186
           +R     D
Sbjct: 239 IRRNEKID 246


>gi|307327612|ref|ZP_07606797.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886724|gb|EFN17725.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 305

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 62/187 (33%), Gaps = 12/187 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
            + R  +  +     L+ +     AG+ ++  +      +  P+ +  + + E    G+ 
Sbjct: 105 AQARIERL-EALGQWLNHLAGVHTAGISLTQTIRASAKAAPAPIAANVQALAERLRAGMD 163

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQL---GGNLSEALANLSRILRDRKNMKAKVQA 121
              + +       L +      V+  QS     G  L++AL  L+  +  +      V+A
Sbjct: 164 AHAAFALFAD--ELADGVSDHVVLLFQSHAVYKGPGLADALEALAITIHQQAADARDVEA 221

Query: 122 LSMEAKASAW--IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              + + ++    +      +  ++     G+       P G ++L          +  +
Sbjct: 222 DRAKVRKASRQVSVVICVVVIGCMLNQAWSGWYA----SPLGQIVLAALGGAFAWTLSWL 277

Query: 180 RLMINFD 186
           R +    
Sbjct: 278 RRIARTK 284


>gi|253998298|ref|YP_003050361.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|313200371|ref|YP_004039029.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|253984977|gb|ACT49834.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|312439687|gb|ADQ83793.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 403

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++    ++P V      +      G SLS++  +     PL   
Sbjct: 73  LATMMKAGVPLLQAFEIVGKGHNNPAVSKLLGDIKSDVETGSSLSQAFRK----YPLY-F 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+        +K+K+++      +   +   +   + 
Sbjct: 128 DALYCNLVGAGEQAGILDSLLDRLATYKEKILAIKSKIKSALFYPVSIIVVAFIITAVIM 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V        +    D     L+ +A +   +    
Sbjct: 188 IFVIPAFKELFSSFGADLPAPTLIVMAISDFFVEYWW 224


>gi|213855587|ref|ZP_03383827.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 289

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|171741512|ref|ZP_02917319.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
           27678]
 gi|171277126|gb|EDT44787.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
           27678]
          Length = 183

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+ V+              V    + G+   ++       
Sbjct: 51  MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 103

Query: 76  MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132
            P   +++    V +     G +    L      L   +R  ++         AK S  +
Sbjct: 104 WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERD------AAKLSIRL 157

Query: 133 IGSLPFCVSTLVYFT 147
           +     C        
Sbjct: 158 LLPTGLCFLPAFIAI 172


>gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 403

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R    + D           + AG+P+  A+ VI  Q            + +    G 
Sbjct: 54  VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS +++      P         +I    ++ G++ +AL  ++        ++ K+    
Sbjct: 114 MLSRALAEKAECFPT----ILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     A +I      +  ++ F  P ++ + 
Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197


>gi|289648896|ref|ZP_06480239.1| general secretion pathway protein F [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 TQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 IGVLGSLALLLAYVVPQFVPIF 196


>gi|227327881|ref|ZP_03831905.1| general secretion pathway protein F [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P +      V      G SL++++            
Sbjct: 77  LATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFP-----GSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|229020883|ref|ZP_04177582.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
 gi|229027757|ref|ZP_04183938.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
 gi|229035195|ref|ZP_04189131.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
 gi|228728087|gb|EEL79127.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
 gi|228733549|gb|EEL84352.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
 gi|228740415|gb|EEL90714.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
          Length = 288

 Score = 38.5 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|315037963|ref|YP_004031531.1| Competence protein [Lactobacillus amylovorus GRL 1112]
 gi|312276096|gb|ADQ58736.1| Competence protein [Lactobacillus amylovorus GRL 1112]
          Length = 333

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 26/179 (14%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69
            +     LD +  S+  G  + +++ +         P R E  R++      G + S  +
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKRKELMRKLAMRMKEGANFSSEL 69

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++           FS     Q       GNL+E L  L+ + R ++    K++    E 
Sbjct: 70  VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   +   +  +  F S  + +   ++  G +++ V    +L+GI  +  ++  
Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173


>gi|168186720|ref|ZP_02621355.1| bacterial type II secretion system protein F [Clostridium botulinum
           C str. Eklund]
 gi|169295347|gb|EDS77480.1| bacterial type II secretion system protein F [Clostridium botulinum
           C str. Eklund]
          Length = 402

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG  + ++V ++  Q+ +P ++     V E    G +LS  + +     P         +
Sbjct: 78  AGADILNSVDLLKKQTENPKLKDSLEVVYEEIQKGYTLSSCMDKFKDVYP----KLLVNM 133

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    + G  L   +  ++        + +K++   M       ++      V+ L+   
Sbjct: 134 VRSGEETG-QLGSVMEKMAEQYEREHRINSKIKGAFM---YPIILVIVCVSAVTFLLTCV 189

Query: 148 SPGYMNVLIND 158
            P ++ +  + 
Sbjct: 190 MPTFVQMFQDS 200


>gi|329118206|ref|ZP_08246916.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465627|gb|EGF11902.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 407

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 1   MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRR 54
           +K   KKR  +     F              ++AGLP+  A  ++    ++P +      
Sbjct: 56  VKATRKKRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHANPSMTQLLMS 108

Query: 55  VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           V      G S+  + ++  +Y        F   +    + GG L   L  L+      ++
Sbjct: 109 VKSDVEQGQSMGSAFAKHPKY-----FDRFYCNLVAAGEAGGVLENLLDKLAVYKEKTQS 163

Query: 115 MKAKVQA 121
           +K KV++
Sbjct: 164 IKKKVKS 170


>gi|213027687|ref|ZP_03342134.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 204

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 5   EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 64

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +  A 
Sbjct: 65  WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPAI 116

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 117 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 147


>gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
 gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
          Length = 576

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQH 60
           K L  +R  +  D     +  +     A +       ++  ++    +  E +R+++   
Sbjct: 84  KLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSEEAEYKELALEMQRIVQLVD 143

Query: 61  L-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               SL +++    + +P + +S F   ++     GG + + L +   ++        + 
Sbjct: 144 TWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFLLSEQDVVIQNYVTIYEG 203

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              ++E     ++   L    + +     P           G +++  A   M  G + M
Sbjct: 204 SLRNLEVMKDLYLSMILSVTFALVFATVLPILTGTNPTMTVGAVVVMFAFVQM--GFLFM 261


>gi|291166356|gb|EFE28402.1| type II secretion system protein [Filifactor alocis ATCC 35896]
          Length = 368

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLG 62
           LI+K    F     + L  I   +  G+ + +++ +I   + +  ++  F  +I     G
Sbjct: 224 LIRKIKRLFFQK--DFLWRISCMLDGGIAIKESLKIIEETEQNRYLKKVFSEMIFLIERG 281

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKAKVQA 121
            S++++IS       + ++S+    I    + GG L E +  L  +  RD + M +K+  
Sbjct: 282 KSVADAISEYPELFSVNDISY----IRQGEESGG-LRENIHALCFLYKRDSEKMISKISD 336

Query: 122 LSMEAKA--SAWIIGSLPFCVSTLVYFT 147
                       ++G + F +  L+  T
Sbjct: 337 YGQPVMILCLGLLVGIVAFSIIPLMNVT 364


>gi|297568843|ref|YP_003690187.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924758|gb|ADH85568.1| Type II secretion system F domain protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 402

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F       +D       AGLP+  ++ ++  Q  +P  +   + V      G + ++S+ 
Sbjct: 68  FTRQLSTMID-------AGLPLVQSLQILGDQQENPTFKKVLKEVRTDVETGSTFADSLK 120

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           +                +    ++GG L    + L+  +   + ++ KV+          
Sbjct: 121 KHPEI-----FDNLYCNMMEAGEVGGILDTICSRLAVFMEKSQALQKKVKGAMTYPIICL 175

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            I   +   +   V           
Sbjct: 176 AISLIVMAVMLIFVVPVFEEMFADF 200


>gi|229073927|ref|ZP_04207005.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185]
 gi|228709167|gb|EEL61263.1| hypothetical protein bcere0025_60150 [Bacillus cereus F65185]
          Length = 288

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR+ + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|218848410|ref|YP_002454972.1| hypothetical protein BCAH820_B0088 [Bacillus cereus AH820]
 gi|218540461|gb|ACK92857.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 300

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 141 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 199

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 200 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 257


>gi|110802764|ref|YP_699126.1| pilus biogenesis protein [Clostridium perfringens SM101]
 gi|110683265|gb|ABG86635.1| putative pilus biogenesis protein [Clostridium perfringens SM101]
          Length = 339

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+PV  ++ +I          E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPVGRSLDLIKNTVKGKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   + 
Sbjct: 75  DMMRIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYIT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|94267866|ref|ZP_01291017.1| type II secretion system protein [delta proteobacterium MLMS-1]
 gi|93451826|gb|EAT02573.1| type II secretion system protein [delta proteobacterium MLMS-1]
          Length = 411

 Score = 38.5 bits (89), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 25/164 (15%)

Query: 6   KKRTAKFLDDFPNALDIIVRSV------------RAGLPVSDAVAVIVGQSSDPVRSEFR 53
           + R  +F   +P    II RS+            RAG+P+  A+ ++   + +       
Sbjct: 254 RLRWDRFKLRWPIFGGIITRSLLARFARTFALSFRAGVPLPAAMGLLARSADN---RYLE 310

Query: 54  RVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
           + IE    G+   ++++R      +   +     +    +  G + E +  ++       
Sbjct: 311 QCIEGMRNGIERGDTLTRTAHNTGM--FTPLVLQMLAVGEETGAIDEMMDEVADFYEREV 368

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           + + K          SA I   L   +  +V   + G    + N
Sbjct: 369 DYELK--------NISAMIEPFLIVAIGIMVLILALGVFLPMWN 404


>gi|138896010|ref|YP_001126463.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2]
 gi|134267523|gb|ABO67718.1| ComG operon protein 2 [Geobacillus thermodenitrificans NG80-2]
          Length = 342

 Score = 38.5 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + R +  G P+  A+  +  Q+    R E  R ++    GL L  +I  +        V 
Sbjct: 18  LGRLLERGYPLGQALEFLAIQAPMKRRLELERCLQQLRAGLPLFAAIEELP-------VD 70

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
             +  +   ++  G+L   +A     L  +     +++      +   ++   L   +  
Sbjct: 71  RLAVSLLFFAERHGDLPRGMAEAGAALAQKARFGEQLRRF---GRYPLFLFALLIVMLLL 127

Query: 143 LVYFTSPGY 151
           +  +  P +
Sbjct: 128 MERWLLPQF 136


>gi|330954615|gb|EGH54875.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|306823785|ref|ZP_07457159.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304552783|gb|EFM40696.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 171

 Score = 38.5 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+ V+              V    + G+   ++       
Sbjct: 39  MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 91

Query: 76  MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132
            P   +++    V +     G +    L      L   +R  ++     LS        I
Sbjct: 92  WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLS--------I 143

Query: 133 IGSLPFCVSTLVYFTS 148
              LP  +  L  F +
Sbjct: 144 RLLLPTGLCFLPAFIA 159


>gi|251788922|ref|YP_003003643.1| general secretion pathway protein F [Dickeya zeae Ech1591]
 gi|247537543|gb|ACT06164.1| general secretion pathway protein F [Dickeya zeae Ech1591]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P + +    V      G SL+E++            
Sbjct: 77  LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|256020058|ref|ZP_05433923.1| type IV pilin biogenesis protein [Shigella sp. D9]
 gi|332281207|ref|ZP_08393620.1| assembly protein in type IV pilin biogenesis transmembrane protein
           [Shigella sp. D9]
 gi|332103559|gb|EGJ06905.1| assembly protein in type IV pilin biogenesis transmembrane protein
           [Shigella sp. D9]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K ++     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKALRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|225871557|ref|YP_002752915.1| hypothetical protein BCA_A0068 [Bacillus cereus 03BB102]
 gi|225785622|gb|ACO25840.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 240

 Score = 38.5 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 81  YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 139

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 140 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 197


>gi|228918238|ref|ZP_04081739.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841415|gb|EEM86557.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 210

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 51  YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 110 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 167


>gi|171057240|ref|YP_001789589.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170774685|gb|ACB32824.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 408

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   ++AG+P+  A  ++   SS+P      R++      +    S+S   R  PLQ   
Sbjct: 78  LATMLKAGVPLLQAFDIVARGSSNP---RLTRMLTDIRGDVETGTSLSAAFRRHPLQ-FD 133

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G L   L  L+        ++ K+++  +   A   +   +   +  
Sbjct: 134 ALYCNLVEAGESAGILETLLDRLANYQEKTIELQNKIRSALIYPVAVLVVAFIVVAVIMI 193

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAA 169
            V  +          D     L+ +A 
Sbjct: 194 FVIPSFKDIFKSFGADLPLPTLIVIAM 220


>gi|190015732|ref|YP_001967248.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
 gi|208702198|ref|YP_002267399.1| hypothetical protein BCH308197_A0144 [Bacillus cereus H3081.97]
 gi|217956758|ref|YP_002335852.1| hypothetical protein BCAH187_C0116 [Bacillus cereus AH187]
 gi|116584639|gb|ABK00756.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
 gi|208658053|gb|ACI30423.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217068513|gb|ACJ82761.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 288

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|330811788|ref|YP_004356250.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379896|gb|AEA71246.1| Type 4 fimbrial assembly protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 405

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR              +   ++AG+P+  A  +I     +P +R     V +    G S 
Sbjct: 61  KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 118

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           + ++ +  +Y    E+      +    +  G L   L  ++      + +KAK++ 
Sbjct: 119 AAALRKCPQYFD--ELY---CNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKK 169


>gi|90023218|ref|YP_529045.1| TonB-dependent siderophore receptor [Saccharophagus degradans 2-40]
 gi|89952818|gb|ABD82833.1| General secretion pathway protein F [Saccharophagus degradans 2-40]
          Length = 411

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++GLP+ + +     QS  PV      +V      G+SL ++++ + R       
Sbjct: 80  LASLVQSGLPLDEVLQSTAKQSRKPVAKSVLLQVRARVLEGISLHQAMAEVPRV-----F 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L   L  L+      +  + K+Q 
Sbjct: 135 DNLYRAMVRAGESSGFLGPVLEQLAEYTERSQETRQKLQM 174


>gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
 gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM
           12286]
          Length = 630

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSE--------S 68
           + +  +   V  G P S+AV  +  +     ++S+  ++  T  L  S  +        +
Sbjct: 413 DFVHAVSGHVSLGRPFSEAVERVAEEVDLGALQSDVDQLAFTLGLTASPDDDATDGRAAA 472

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL----RDRKNMKAKVQALSM 124
           + R V  +          ++      G +  +    L   +     +RK +++ +     
Sbjct: 473 LDRFVERVGTPMAEQTIGLVVGALDAGSDAEDVFETLQTEIGKLYHERKALRSSLLVYVA 532

Query: 125 EAKASAWIIGSLPFCVSTLVY 145
               +A ++  +   V+  V 
Sbjct: 533 VGWTTALLVVGIVVAVNAYVL 553



 Score = 37.8 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV--AVIVGQSSDPVRSEFRRVIET 58
           ++ + K R +      P A+  + R + +G     A+   V    +       F+R++  
Sbjct: 130 LRWVGKARRSDIEATLPGAVRYL-RVLASGEHDQRAMLGRVADQDAYGETAVAFQRILNR 188

Query: 59  QHLGLSLSESISRMVRYMPLQEV 81
             L  SL E +  +    P +++
Sbjct: 189 AALTGSLDEGLEHVASETPSRDL 211


>gi|56412416|ref|YP_149491.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361352|ref|YP_002140987.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126673|gb|AAV76179.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092827|emb|CAR58253.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 400

 Score = 38.5 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +    
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|313837846|gb|EFS75560.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA2]
          Length = 307

 Score = 38.1 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 171 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 230

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q + G +L ++       LRD   ++ + ++ ++  +   W +    
Sbjct: 231 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 289

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 290 SVMLILL 296


>gi|27364323|ref|NP_759851.1| general secretion pathway protein F [Vibrio vulnificus CMCP6]
 gi|37678400|ref|NP_933009.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016]
 gi|320157715|ref|YP_004190094.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O]
 gi|27360441|gb|AAO09378.1| general secretion pathway protein F [Vibrio vulnificus CMCP6]
 gi|37197139|dbj|BAC92980.1| type II secretory pathway, component EpsF [Vibrio vulnificus YJ016]
 gi|319933027|gb|ADV87891.1| general secretion pathway protein E [Vibrio vulnificus MO6-24/O]
          Length = 405

 Score = 38.1 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V++G+P+ + +  +  Q+  P +R     V      G +L++S+S         E+
Sbjct: 74  ISTLVQSGMPLEECLKAVSDQAEKPRIRGMLAAVRAKVTEGYTLADSLSDYPHIFD--EL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K   L         ++      V+
Sbjct: 132 Y---RSMVAAGEKSGHLDAVLERLADYCENRQKMRSK---LLQAMIYPVVLVVFAVTIVA 185

Query: 142 TLVYFTSPGYMNVLIN 157
            L+    P  +  +I 
Sbjct: 186 FLLATVVPKIVEPIIQ 201


>gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon]
          Length = 674

 Score = 38.1 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI--VGQSSDPVRSEFRRVIETQH 60
           ++  +R  K   + P A   +    R  + + D +  +     +   V  EF+ +  + H
Sbjct: 148 YIANERKRKININLPFATTFMYAMSRGSVTIIDVIEAVAEAEDTYGQVSVEFQSIANSIH 207

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                L  +I   +   P  ++S     +      G ++     + S    +    + K 
Sbjct: 208 YSTNDLRSAIKNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYIEESKEEQKQ 267

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
               +E  +  +I+  +   +  LV       + + +    G++L  +A   + +G  V 
Sbjct: 268 ILDQLEVLSEVYIVLFVASPIFVLVINV----VMLFLGASNGNILYALAYLAIPLGGGVF 323

Query: 180 RLMINF 185
             ++  
Sbjct: 324 TAIVWI 329


>gi|124515782|gb|EAY57291.1| putative general secretion pathway protein F [Leptospirillum
           rubarum]
 gi|206602161|gb|EDZ38643.1| Putative general secretion pathway protein F [Leptospirillum sp.
           Group II '5-way CG']
          Length = 400

 Score = 38.1 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ 59
           ++    +R AK   D       +   V +G+PV +++  I+ Q   DP+ S    + E  
Sbjct: 51  LRQTGGRRRAK-AGDIALFTRQMGILVGSGIPVVESLGAILDQGLPDPMGSTVAAIREDV 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G  L +++S   R       S     +    +  G L   L  LS  L  +   + KV
Sbjct: 110 KEGQPLHQALSLHPRI-----FSDLYVNMIRAGEESGTLDVMLDRLSDFLEKQVETRRKV 164

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147
                      + +  +   +  +++  
Sbjct: 165 LGSL------FYPLILMMVGILMVIFLL 186


>gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8]
 gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8]
          Length = 406

 Score = 38.1 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL +  A+A++  Q+ +   R   ++V      G++ SE++S+          
Sbjct: 74  LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     +    +  G L   L  L+  L     ++ K+++              + + + 
Sbjct: 128 SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSAMTYPVIVFVFAVGVAYFLL 187

Query: 142 TLVYFTSPGYMNVLIN 157
           T +    P +  +L +
Sbjct: 188 TGIV---PQFAQILTD 200


>gi|328759518|gb|EGF73127.1| membrane associated protein [Propionibacterium acnes HL099PA1]
          Length = 297

 Score = 38.1 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDAPLFVQIRQVLNRAALENVDPWNGLDRLADDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q + G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILM 286


>gi|330958211|gb|EGH58471.1| type II secretion system protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q   P  R+   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALEGTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|18311267|ref|NP_563201.1| type II secretion system protein F [Clostridium perfringens str.
           13]
 gi|18145950|dbj|BAB81991.1| probable pilin biogenesis protein [Clostridium perfringens str. 13]
          Length = 401

 Score = 38.1 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 25  RSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
             + +GL +  A+ +++ Q   P +R     V      G +L+ S+ +     P      
Sbjct: 73  VMLDSGLSIGKALNILIEQGEKPKIREALIGVNGDLKRGETLANSMRKRKDVFP-----N 127

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             T +    +  GNL   L  ++        ++ K++           +       ++ +
Sbjct: 128 LLTSMIDAGERSGNLDIILKRMAEYYEKETKIRGKIK---SAMIYPIVLGVVAIIAITFI 184

Query: 144 VYFTSPGYMNVL 155
           + F  P ++ + 
Sbjct: 185 LTFVMPTFVQMF 196


>gi|227497417|ref|ZP_03927649.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
           15434]
 gi|226833093|gb|EEH65476.1| hypothetical protein HMPREF0058_1641 [Actinomyces urogenitalis DSM
           15434]
          Length = 231

 Score = 38.1 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 17/156 (10%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAG-LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           R  +     P ALD++  +V  G  PV  A  ++V   +     E   ++          
Sbjct: 78  RRRQIEASLPEALDVLALAVDTGWQPVQGAERLMVSTFNAAFAHELAGIL-------PPD 130

Query: 67  ES--ISRMVRYMPLQEVSFFSTVISVQS------QLGGNLSEALANLSRILRDRKNMKAK 118
            +  I  +V  +   E    + V+ +Q       + G  LS  L   +  LR+R+  +  
Sbjct: 131 GAPLIPELVSRLG-AEPGASAQVLRLQRAFVSAPEGGEVLSGLLRAQAADLRERRRQQLA 189

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
            +     A  +A ++      +           +  
Sbjct: 190 RRVGCRLAFQAALVLLIQVPVMVVAFAVLVRALLEP 225


>gi|119773509|ref|YP_926249.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B]
 gi|119766009|gb|ABL98579.1| type IV pilus biogenesis protein PilC [Shewanella amazonensis SB2B]
          Length = 419

 Score = 38.1 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++      P +R     ++     G+ LS+++      +   ++
Sbjct: 88  IATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALR--PHRIYFDDL 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G+L      ++      + +K+K++ 
Sbjct: 146 Y---VDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKK 182


>gi|283779917|ref|YP_003370672.1| type II secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438370|gb|ADB16812.1| type II secretion system protein [Pirellula staleyi DSM 6068]
          Length = 355

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           ++      D I    RA LP+ DA+          + +  R V      G SL +++  +
Sbjct: 11  IEQLACLHDEIAAISRAKLPLGDALTAFGNDVPGKLGAAAREVGSRIASGESLEQAVGAV 70

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P      +S V+ +  ++G  L  AL  ++ + R     +  V    + A      
Sbjct: 71  SSHWP----QAYSAVVKIGVRVG-RLPAALEAIADVSRTIVAARRAV----LSAMIPPLF 121

Query: 133 IGSLPFCVSTLVYFTSPGYMNVL 155
           +  L + +      TS   M   
Sbjct: 122 VFFLGYGLLLFFIATSAQTMLDF 144


>gi|271501353|ref|YP_003334378.1| general secretion pathway protein F [Dickeya dadantii Ech586]
 gi|270344908|gb|ACZ77673.1| general secretion pathway protein F [Dickeya dadantii Ech586]
          Length = 408

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+ +A+  +  QS  P + +    V      G SL+E++            
Sbjct: 77  LATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLAEAMGNFP-----GSF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                 +    +  G+L   L  L+     R+ M++++Q
Sbjct: 132 ERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQ 170


>gi|291296512|ref|YP_003507910.1| type II secretion system protein [Meiothermus ruber DSM 1279]
 gi|290471471|gb|ADD28890.1| type II secretion system protein [Meiothermus ruber DSM 1279]
          Length = 406

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 16/139 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78
           +   + AGLP+  A+A++  Q+    + +F+ +++        G + SE++S+       
Sbjct: 74  LATMLNAGLPIVQALAILERQTE---KKKFQSILKEIRTEVEGGANFSEALSKHSL---- 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +     +    +  G L   L  L+  L +   ++ K++         A +      
Sbjct: 127 --FTRLYINLVRAGETSGTLDAILDRLATFLENELALRGKIR---SAMTYPAIVFVFAIG 181

Query: 139 CVSTLVYFTSPGYMNVLIN 157
               L+    P +  +L  
Sbjct: 182 VTYFLLTGIVPQFAQILTG 200


>gi|91791492|ref|YP_561143.1| general secretion pathway protein F [Shewanella denitrificans
           OS217]
 gi|91713494|gb|ABE53420.1| General secretion pathway protein F [Shewanella denitrificans
           OS217]
          Length = 407

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V AGLP+ +A+  +  QS  D + S    V      G SL++S++           
Sbjct: 76  IATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRVVEGYSLADSLAEFPHI-----F 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 +    +  G+L   L  L+     R+ +K+K+ QA+      +   IG +   +
Sbjct: 131 DDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVVLTLVAIGVIGVLL 190

Query: 141 STLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVMRLMI 183
           + +V     G    +  +  G    L+  +      G++V+ L++
Sbjct: 191 AAVVPKVV-GQFEHMGQELPGTTQFLILASDFVQSYGVLVIGLIV 234


>gi|320108203|ref|YP_004183793.1| type II secretion system F domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319926724|gb|ADV83799.1| Type II secretion system F domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 399

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
             KR    L+ F       V  ++AGLP+  ++ ++  +  D  ++++   + E    G 
Sbjct: 50  ASKRKKVKLESFLIFNQQFVTLIKAGLPIPGSLQLLGRRQKDLRLKAQLENIAERVKTGE 109

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SLS +                 T   +  +  GNL E L       R     + K++   
Sbjct: 110 SLSAAFD------AQGGFPLVYTTTLLAGERSGNLEEVLQRYLDFQRISLTFRKKLK--- 160

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGY 151
                   ++  +      L+ F  P +
Sbjct: 161 ASMVYPVLLVTLVLSLFIFLITFVVPRF 188


>gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense
           DSM 11551]
 gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense
           DSM 11551]
          Length = 636

 Score = 38.1 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 8   RTAKFL----DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLG 62
           R A+       +  + +  I   V  G P  +AV  +  +    P+  +   +     L 
Sbjct: 405 RRARLDGAKDRELKDFVHAISGHVSLGRPFPEAVEHVAREVELGPLSDDVADLALNLRLT 464

Query: 63  LS--------LSESISRMVRYMPLQ----EVSFFSTVISVQSQLGGNLSEALANLSRILR 110
                      + ++ R V  +        +      +   S  G       + + R+  
Sbjct: 465 SPNTGTDEDLRTAALDRFVERVGTPMAEQTIGLVIGALDAGSDTGTVFETLQSEVGRLYH 524

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +++ +++ +         +A ++  +       V+
Sbjct: 525 EKRALRSGMLVYVAVGWTTALLVVGITVATGAHVF 559


>gi|228918640|ref|ZP_04082073.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841014|gb|EEM86223.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 210

 Score = 38.1 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 51  YLLKKRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 109

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 110 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 167


>gi|148545924|ref|YP_001266026.1| type II secretion system protein [Pseudomonas putida F1]
 gi|148509982|gb|ABQ76842.1| type II secretion system protein [Pseudomonas putida F1]
          Length = 402

 Score = 38.1 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58
           L K+R       F              ++AG+P+  A  V+     D    +   R+ + 
Sbjct: 56  LPKRRQKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 108

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              GL L++++ R   +      + +  ++ V  Q G  L   L  L+ +L  R+ +  K
Sbjct: 109 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 163

Query: 119 VQA 121
           V+ 
Sbjct: 164 VRK 166


>gi|300821891|ref|ZP_07102035.1| type II secretion system F domain protein [Escherichia coli MS
           119-7]
 gi|300525491|gb|EFK46560.1| type II secretion system F domain protein [Escherichia coli MS
           119-7]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|238784555|ref|ZP_04628562.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
 gi|238714521|gb|EEQ06526.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
          Length = 365

 Score = 38.1 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 15/154 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  ++ ++  +    P R   + + +    G SLSE+++   R  P    
Sbjct: 34  LATLLQAGLPLVHSLQLLAKEMDALPWRCLLQEISQQVSQGQSLSEAMTHYPRIFP---- 89

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPFCV 140
             +  VI++     G L+  L      L + +  + K+Q   ++A K   ++        
Sbjct: 90  RLYPPVIAM-----GELTGNLEQCCIQLVEHQERQQKLQKKVIKALKYPVFVCIIALVVS 144

Query: 141 STLVYFTSPGYMNVL--INDPRGHMLLGVAAAFM 172
             ++    P +  +    + P     L  +  +M
Sbjct: 145 VLMLVMVLPEFAQIYQSFDTPL--PTLTASLLWM 176


>gi|74310725|ref|YP_309144.1| type IV pilin biogenesis protein [Shigella sonnei Ss046]
 gi|73854202|gb|AAZ86909.1| putative integral membrane protein [Shigella sonnei Ss046]
 gi|323165987|gb|EFZ51767.1| bacterial type II secretion system F domain protein [Shigella
           sonnei 53G]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|206972976|ref|ZP_03233898.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|229194288|ref|ZP_04321127.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876]
 gi|206731860|gb|EDZ49060.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|228589187|gb|EEK47167.1| hypothetical protein bcere0002_58720 [Bacillus cereus ATCC 10876]
          Length = 288

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR+ + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|109899536|ref|YP_662791.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
 gi|109701817|gb|ABG41737.1| type II secretion system protein [Pseudoalteromonas atlantica T6c]
          Length = 396

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L  +     +G+ + DA+  +      P +   F  +      G SLS ++  M   +P 
Sbjct: 64  LQELATLTSSGVALIDAIKALGQNKEHPNLAKGFMLMASRIEGGESLSAAL--MASGLPF 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            +       +    +LGG L  AL N S  L   + +K  V+           +IGS   
Sbjct: 122 PQY---VAHLVSAGELGGQLPIALTNASEQLNYEQAIKNDVRGALT---YPLVLIGSGLA 175

Query: 139 CVSTLVYFTSPGYMNVL 155
            +  + +   P + ++L
Sbjct: 176 AMLIIFFAVVPKFSHLL 192


>gi|56420969|ref|YP_148287.1| DNA transport protein [Geobacillus kaustophilus HTA426]
 gi|56380811|dbj|BAD76719.1| DNA transport machinery [Geobacillus kaustophilus HTA426]
          Length = 338

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 14/151 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV-RYMPLQEV 81
           + R +  G P+  A+  +  Q+    R E  R ++    GL L  ++  +    M +  +
Sbjct: 14  LGRLLERGYPLGQALEFLAIQAPTHRRMEVERCLQQLRAGLPLFAAVEALSVDRMAVN-L 72

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            FF+       +  G+L   +A     L  +     ++   S   +   +++  L   + 
Sbjct: 73  LFFA-------ERHGDLPRGMAETGEALAQKARFHEQLHRFS---RYPLFLLSLLIIMLV 122

Query: 142 TLVYFTSPGY--MNVLINDPRGHMLLGVAAA 170
            + ++  P +       +  RGH    +A  
Sbjct: 123 LMEWWLLPQFERAAAAFSPQRGHTAWLLAVV 153


>gi|312970200|ref|ZP_07784382.1| bacterial type II secretion system F domain protein [Escherichia
           coli 1827-70]
 gi|310337698|gb|EFQ02809.1| bacterial type II secretion system F domain protein [Escherichia
           coli 1827-70]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|293417980|ref|ZP_06660602.1| transporter HofC [Escherichia coli B185]
 gi|291430698|gb|EFF03696.1| transporter HofC [Escherichia coli B185]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain
           [Carboxydibrachium pacificum DSM 12653]
          Length = 249

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 26/76 (34%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL+I +  +  G+   + +  IV      VR            G SL +++   
Sbjct: 103 EEELPAALEIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALLSA 162

Query: 73  VRYMPLQEVSFFSTVI 88
                      F+  +
Sbjct: 163 ADKSLNDHFKRFAKAV 178


>gi|168264008|ref|ZP_02685981.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205347510|gb|EDZ34141.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAQQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +    
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYCSFNTPL 199


>gi|260771888|ref|ZP_05880806.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
           69.14]
 gi|260613180|gb|EEX38381.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
           69.14]
          Length = 408

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        ++S   ++ +    G  +S+++            
Sbjct: 77  LSTMLATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAM-----RTASSLF 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  GNL+E    L+      + ++AKV    +       +   + + + 
Sbjct: 132 DPLYVDLVQTGEQSGNLAEVFERLATYREKTEQLRAKVIKALIYPAMVMLVALGVSYLML 191

Query: 142 TLVY 145
           T++ 
Sbjct: 192 TMII 195


>gi|85860074|ref|YP_462276.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
 gi|85723165|gb|ABC78108.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
          Length = 409

 Score = 38.1 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+  A+ ++V Q+ +  ++S   ++ +    G+SLS  +S   R       
Sbjct: 78  LATLLSAGMPLVQALNILVTQTDNQALQSILSQIRKDVVEGISLSAGMSSFPRV-----F 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S F   +    +  G L   L  L+     ++    K++A              + F + 
Sbjct: 133 SSFYISMVRAGEASGTLPVVLERLADYSEKQQEFARKIKAALAYPILMFLFGALILFFLI 192

Query: 142 TLVYFTSPGYMNVL 155
           T V          +
Sbjct: 193 TFVIPNITEVFEEM 206


>gi|319761633|ref|YP_004125570.1| type ii secretion system f domain protein [Alicycliphilus
           denitrificans BC]
 gi|330823499|ref|YP_004386802.1| type II secretion system F domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317116194|gb|ADU98682.1| Type II secretion system F domain protein [Alicycliphilus
           denitrificans BC]
 gi|329308871|gb|AEB83286.1| Type II secretion system F domain protein [Alicycliphilus
           denitrificans K601]
          Length = 405

 Score = 38.1 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++    ++  V      +      G SL+ +  +     P+   
Sbjct: 75  MATMMKAGVPLLQSFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRK----YPMY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKSKIRSALMYPISVLVVAFVVVTVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     LL +A +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWL 227


>gi|238760526|ref|ZP_04621660.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238701242|gb|EEP93825.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 303

 Score = 38.1 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
           +++   +R                  ++AGLP+ +++ ++  +    P R     + +  
Sbjct: 42  IRYWQGERLITVTRQL-------ATLLQAGLPLVNSLQLLAKEMDALPWRCLLHEISQLV 94

Query: 60  HLGLSLSESISRMVRYMP 77
             G  LSE+++   +  P
Sbjct: 95  AQGKPLSEAMAHYPQTFP 112


>gi|223982948|ref|ZP_03633160.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM
           12042]
 gi|223965109|gb|EEF69409.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM
           12042]
          Length = 290

 Score = 38.1 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/142 (5%), Positives = 42/142 (29%)

Query: 37  VAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG 96
           +         P++ +    +         ++++  + +     +V     ++  +   GG
Sbjct: 137 LKDCAALVEAPLKKDLELCVGQIEANSDFAQALDDLEKKYEYSQVRNLHLLLKGKKIEGG 196

Query: 97  NLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
              + +  L     + + +    +     +++  + +  L    + ++       M V +
Sbjct: 197 RNEQLVDYLFDNTEESELLINDYRQKKAASRSVFYFMMILNLLAALVMKKMFHSSMYVNL 256

Query: 157 NDPRGHMLLGVAAAFMLIGIMV 178
                   + +        + +
Sbjct: 257 ATETFRFCIFLFYLLNAATLFL 278


>gi|156975735|ref|YP_001446642.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116]
 gi|156527329|gb|ABU72415.1| hypothetical protein VIBHAR_03470 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score = 38.1 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    V      G  +S+++            
Sbjct: 76  IATMLMTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAM-----RTASTHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNLS+    L+      + ++AKV          A I  ++   V+
Sbjct: 131 DPLYTDLIATGEQSGNLSQVFERLATYREKSEQLRAKV--------IKALIYPAMVVLVA 182

Query: 142 TLVYFT 147
             V + 
Sbjct: 183 LGVSYL 188


>gi|157159575|ref|YP_001456893.1| type IV pilin biogenesis protein [Escherichia coli HS]
 gi|187732598|ref|YP_001878915.1| type IV pilin biogenesis protein [Shigella boydii CDC 3083-94]
 gi|193063232|ref|ZP_03044323.1| type IV pilus assembly protein PilC [Escherichia coli E22]
 gi|193071239|ref|ZP_03052160.1| type IV pilus assembly protein PilC [Escherichia coli E110019]
 gi|194430297|ref|ZP_03062791.1| type IV pilus assembly protein PilC [Escherichia coli B171]
 gi|209917297|ref|YP_002291381.1| type IV pilin biogenesis protein [Escherichia coli SE11]
 gi|218552686|ref|YP_002385599.1| type IV pilin biogenesis protein [Escherichia coli IAI1]
 gi|218693572|ref|YP_002401239.1| type IV pilin biogenesis protein [Escherichia coli 55989]
 gi|260842340|ref|YP_003220118.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O103:H2 str. 12009]
 gi|260853318|ref|YP_003227209.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O26:H11 str. 11368]
 gi|260866257|ref|YP_003232659.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O111:H- str. 11128]
 gi|307311445|ref|ZP_07591087.1| Type II secretion system F domain protein [Escherichia coli W]
 gi|331666341|ref|ZP_08367222.1| protein transport protein HofC [Escherichia coli TA271]
 gi|331680678|ref|ZP_08381337.1| protein transport protein HofC [Escherichia coli H591]
 gi|157065255|gb|ABV04510.1| type IV pilus assembly protein PilC [Escherichia coli HS]
 gi|187429590|gb|ACD08864.1| type IV pilus assembly protein PilC [Shigella boydii CDC 3083-94]
 gi|192931140|gb|EDV83743.1| type IV pilus assembly protein PilC [Escherichia coli E22]
 gi|192955449|gb|EDV85931.1| type IV pilus assembly protein PilC [Escherichia coli E110019]
 gi|194411652|gb|EDX27980.1| type IV pilus assembly protein PilC [Escherichia coli B171]
 gi|209910556|dbj|BAG75630.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218350304|emb|CAU95987.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli 55989]
 gi|218359454|emb|CAQ96992.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli IAI1]
 gi|257751967|dbj|BAI23469.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O26:H11 str. 11368]
 gi|257757487|dbj|BAI28984.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O103:H2 str. 12009]
 gi|257762613|dbj|BAI34108.1| assembly protein HofC in type IV pilin biogenesis, transmembrane
           protein [Escherichia coli O111:H- str. 11128]
 gi|306908424|gb|EFN38922.1| Type II secretion system F domain protein [Escherichia coli W]
 gi|320183609|gb|EFW58452.1| Type IV fimbrial assembly protein PilC [Shigella flexneri CDC
           796-83]
 gi|323157827|gb|EFZ43930.1| bacterial type II secretion system F domain protein [Escherichia
           coli EPECa14]
 gi|323160098|gb|EFZ46059.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli E128010]
 gi|323176412|gb|EFZ62004.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli 1180]
 gi|323181801|gb|EFZ67214.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli 1357]
 gi|323380115|gb|ADX52383.1| Type II secretion system F domain protein [Escherichia coli KO11]
 gi|324017735|gb|EGB86954.1| type II secretion system F domain protein [Escherichia coli MS
           117-3]
 gi|324118454|gb|EGC12348.1| type II secretion system protein F [Escherichia coli E1167]
 gi|331066552|gb|EGI38429.1| protein transport protein HofC [Escherichia coli TA271]
 gi|331072141|gb|EGI43477.1| protein transport protein HofC [Escherichia coli H591]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|290958553|ref|YP_003489735.1| type II secretion system F protein [Streptomyces scabiei 87.22]
 gi|260648079|emb|CBG71187.1| putative type II secretion system F protein [Streptomyces scabiei
           87.22]
          Length = 263

 Score = 38.1 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            + AG     A   +      PV     R      LG   +E+   +        ++   
Sbjct: 131 CITAGASPVVAARAVGEALGGPVGESLARGSAEVRLGSEPAEAWRGLAALPGAGALARL- 189

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCVSTLV 144
             +    + G   +  +A L+   R  +   A  +A       +A + +  LP  ++  V
Sbjct: 190 --LERADESGVPAASPVARLAAEARADRGRSATERARRAAVMITAPVGLCFLPAFITVGV 247

Query: 145 Y 145
            
Sbjct: 248 L 248


>gi|222834546|gb|EEE73023.1| predicted protein [Populus trichocarpa]
          Length = 183

 Score = 38.1 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  ++ +I    ++P        +      G S++ +  R  +Y      
Sbjct: 91  LSTMLKAGVPLLQSIDIIARGHANPNFTQLLTVIRSDIESGSSMATAFRRHPQY-----F 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 +    + GG L   L  LS  +     +K ++
Sbjct: 146 DTLYCNLIDAGEQGGILDALLERLSLYMEKSIALKGQI 183


>gi|206890249|ref|YP_002248063.1| pilin secretion/fimbrial assembly system protein, PilC, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742187|gb|ACI21244.1| pilin secretion/fimbrial assembly system protein, PilC, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 403

 Score = 38.1 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 17/167 (10%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISR 71
                  +   ++AG+P++ A+  I    +   R  F+RVI         G+  +E+IS 
Sbjct: 65  LIEFARNLSIMLKAGIPLTTALTDIAENIT---RERFKRVISDIKTMVEKGMPFNEAISM 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P          +    +  G L ++L  ++   +  ++++A ++   +    +A 
Sbjct: 122 HKEVFPS-----VVQYLIKIGEETGRLDKSLDEIANYFQRIEDLRAAIKRALIYPIFAAV 176

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +       V   + +  P  +N +     G  +  +    + IG  +
Sbjct: 177 VSFG---AVCFWLIYVLPQIVNAMKG--MGIAIPFITQLLIQIGSFL 218


>gi|282165240|ref|YP_003357625.1| hypothetical protein MCP_2570 [Methanocella paludicola SANAE]
 gi|282157554|dbj|BAI62642.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 296

 Score = 38.1 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 1/128 (0%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRY 75
           P     +   V+A   +  A+  +       +  E  R++      G  ++ ++  M   
Sbjct: 82  PELFYDLSEQVKASGSIVKALKRVSRHEYGTISDEVCRMLSEIEEEGYDIASALRAMALR 141

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
              + V    +VI        NL   L  ++   R  +++K + QA    +    +    
Sbjct: 142 TKNRYVDRSVSVIIEALTTSSNLESILKAVASEGRLAQSLKKERQAGISSSVFVIYFTAI 201

Query: 136 LPFCVSTL 143
           +   V+ L
Sbjct: 202 IFLAVTML 209


>gi|229142568|ref|ZP_04271049.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
 gi|228640862|gb|EEK97212.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
          Length = 240

 Score = 38.1 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 81  YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAE 139

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 140 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 197


>gi|300923113|ref|ZP_07139173.1| type II secretion system F domain protein [Escherichia coli MS
           182-1]
 gi|301330114|ref|ZP_07222783.1| type II secretion system F domain protein [Escherichia coli MS
           78-1]
 gi|300420568|gb|EFK03879.1| type II secretion system F domain protein [Escherichia coli MS
           182-1]
 gi|300843861|gb|EFK71621.1| type II secretion system F domain protein [Escherichia coli MS
           78-1]
 gi|323945733|gb|EGB41781.1| bacterial type II secretion system protein F containing protein
           [Escherichia coli H120]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|228912576|ref|ZP_04076238.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL
           200]
 gi|228847045|gb|EEM92037.1| hypothetical protein bthur0013_66350 [Bacillus thuringiensis IBL
           200]
          Length = 288

 Score = 38.1 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+KKR+ + ++    + P  L  +++ ++      +AV      +   +R     +   
Sbjct: 129 YLLKKRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|70732017|ref|YP_261762.1| integral membrane protein [Pseudomonas fluorescens Pf-5]
 gi|68346316|gb|AAY93922.1| integral membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 388

 Score = 38.1 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  +   +R+G+   DA+ ++   +   +R     +      G +  +++       P 
Sbjct: 255 FLMNMSVMLRSGINQLDALTILKRGAPPWLRERLDAIHYGVRSGKNFGQALKLAGHRFPD 314

Query: 79  QEVSFFSTVI----SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK----ASA 130
                 +  I     +  + G   +E++   +      + ++  ++ +   +K     S+
Sbjct: 315 ------AMAIHYLEVLAVRKG--FAESMERFAS-----RWLEQTLRKVEATSKFLIAFSS 361

Query: 131 WIIGSLPFCVSTLVYFTSPGYMN 153
             +G L   V   ++  + G M+
Sbjct: 362 VCMGVLMILVVVGIFQMARGVMD 384



 Score = 34.7 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF---RRVIETQHLG 62
           KK   +F +     L+        G+P+  A+  +    S+    E      +     + 
Sbjct: 30  KKERIQFYESLMGVLED-------GIPIEVALETVQKAFSND-GKELHPVSIICSEIAMS 81

Query: 63  LSLSESISRMVR-YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           +   +S+++  R  +P +E     T +    +  GNL +A  +  RI+  R+ +   +Q+
Sbjct: 82  VRGGKSLAQSCRSRLPYEE-----TSLIETGEQTGNLVQAFRDCVRIIEIRQRIARLIQS 136

Query: 122 LSMEAKASAWIIGSLPFCVSTLV 144
           +      +  ++ +L + ++  +
Sbjct: 137 VVAMPSLTWSLMWALLYVIALWM 159


>gi|310829688|ref|YP_003962045.1| putative type II secretion pathway protein XcpS [Eubacterium
           limosum KIST612]
 gi|308741422|gb|ADO39082.1| putative type II secretion pathway protein XcpS [Eubacterium
           limosum KIST612]
          Length = 396

 Score = 38.1 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64
           KK       +  +    I   + +G+ V  A+++++ ++  P V   ++ +      G++
Sbjct: 49  KKAYKMKNMELSDFSREIENMLASGITVIRALSIMMERNIKPNVAKVYKALYREVQQGIT 108

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LSE++       P   ++ F        +  G ++E    ++        +  K++   +
Sbjct: 109 LSEAMENSRGSFPQLIINMF-----RAGESSGQMAETAHKMALYYEKEHRLHTKIRNAMI 163

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
                      +   + T +    P + ++      G      A   M+IGI
Sbjct: 164 YPILLLVATVVVVIGLFTFIL---PQFFDLF----EGMDAALPAITVMVIGI 208


>gi|16128099|ref|NP_414648.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106987|ref|AP_000767.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. W3110]
 gi|170021540|ref|YP_001726494.1| type IV pilin biogenesis protein [Escherichia coli ATCC 8739]
 gi|170079743|ref|YP_001729063.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899505|ref|YP_002925301.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BW2952]
 gi|253774866|ref|YP_003037697.1| type IV pilin biogenesis protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037520|ref|ZP_04871597.1| type II secretion system protein [Escherichia sp. 1_1_43]
 gi|254160226|ref|YP_003043334.1| type IV pilin biogenesis protein [Escherichia coli B str. REL606]
 gi|256025418|ref|ZP_05439283.1| type IV pilin biogenesis protein [Escherichia sp. 4_1_40B]
 gi|297517077|ref|ZP_06935463.1| type IV pilin biogenesis protein [Escherichia coli OP50]
 gi|300949875|ref|ZP_07163840.1| type II secretion system F domain protein [Escherichia coli MS
           116-1]
 gi|300955970|ref|ZP_07168303.1| type II secretion system F domain protein [Escherichia coli MS
           175-1]
 gi|301646418|ref|ZP_07246300.1| type II secretion system F domain protein [Escherichia coli MS
           146-1]
 gi|307136705|ref|ZP_07496061.1| type IV pilin biogenesis protein [Escherichia coli H736]
 gi|331640557|ref|ZP_08341705.1| protein transport protein HofC [Escherichia coli H736]
 gi|2506494|sp|P36646|HOFC_ECOLI RecName: Full=Protein transport protein hofC
 gi|1786295|gb|AAC73217.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674330|dbj|BAB96674.2| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K12 substr. W3110]
 gi|169756468|gb|ACA79167.1| type II secretion system protein [Escherichia coli ATCC 8739]
 gi|169887578|gb|ACB01285.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|226840626|gb|EEH72628.1| type II secretion system protein [Escherichia sp. 1_1_43]
 gi|238860031|gb|ACR62029.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BW2952]
 gi|242375940|emb|CAQ30621.1| protein transport protein HofC [Escherichia coli BL21(DE3)]
 gi|253325910|gb|ACT30512.1| type II secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972127|gb|ACT37798.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli B str. REL606]
 gi|253976336|gb|ACT42006.1| assembly protein in type IV pilin biogenesis, transmembrane protein
           [Escherichia coli BL21(DE3)]
 gi|260450689|gb|ACX41111.1| type II secretion system protein [Escherichia coli DH1]
 gi|300317190|gb|EFJ66974.1| type II secretion system F domain protein [Escherichia coli MS
           175-1]
 gi|300450753|gb|EFK14373.1| type II secretion system F domain protein [Escherichia coli MS
           116-1]
 gi|301075388|gb|EFK90194.1| type II secretion system F domain protein [Escherichia coli MS
           146-1]
 gi|309700315|emb|CBI99603.1| protein transport protein HofC [Escherichia coli ETEC H10407]
 gi|315134797|dbj|BAJ41956.1| type IV pilin biogenesis protein [Escherichia coli DH1]
 gi|315616117|gb|EFU96736.1| bacterial type II secretion system F domain protein [Escherichia
           coli 3431]
 gi|323939856|gb|EGB36056.1| type II secretion system protein F [Escherichia coli E482]
 gi|323960050|gb|EGB55696.1| type II secretion system protein F [Escherichia coli H489]
 gi|323970776|gb|EGB66030.1| type II secretion system protein F [Escherichia coli TA007]
 gi|331040303|gb|EGI12510.1| protein transport protein HofC [Escherichia coli H736]
 gi|332341436|gb|AEE54770.1| type IV pilus assembly protein PilC [Escherichia coli UMNK88]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|163846483|ref|YP_001634527.1| hypothetical protein Caur_0905 [Chloroflexus aurantiacus J-10-fl]
 gi|222524263|ref|YP_002568734.1| hypothetical protein Chy400_0986 [Chloroflexus sp. Y-400-fl]
 gi|163667772|gb|ABY34138.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448142|gb|ACM52408.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 308

 Score = 38.1 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 69/202 (34%), Gaps = 33/202 (16%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           +       +   A+  +   +  GL +  A+  ++    D P+R E+R ++  Q  G  L
Sbjct: 117 RYNRHLERELTPAIGRLSALLSGGLGLRTALERVLTDMGDGPLRDEWRWLLRQQ--GTPL 174

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLS------------------R 107
           ++          +  +      ++ Q+      +  L +L+                   
Sbjct: 175 ADG--------SIATLRQVIAALAAQT-SASRHATLLNHLAVAADQPQDLQARRCAAAYA 225

Query: 108 ILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---ML 164
            L+  +  + +      + + S   +G     ++  +  T    + +  + P G    ++
Sbjct: 226 ALQVSERRREEALTELAQMRYSGLAVGGAGCLMALYLIATQWERVRIAYSTPLGMVFAVI 285

Query: 165 LGVAAAFMLIGIMVMRLMINFD 186
           + +A    +IG  +   + + D
Sbjct: 286 VTLALLAPMIGGFLFSQVEDVD 307


>gi|314977797|gb|EFT21891.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
          Length = 297

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|314932289|gb|EFS96120.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
          Length = 297

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|126176110|ref|YP_001052259.1| type II secretion system protein [Shewanella baltica OS155]
 gi|125999315|gb|ABN63390.1| type II secretion system protein [Shewanella baltica OS155]
          Length = 422

 Score = 38.1 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        VR     ++     G+ LS+++    RY     V
Sbjct: 91  IATMLAAGVPLVTTIELLGRGHEKAKVRELLGNILSEIQSGIPLSDAMRPHRRYFDELYV 150

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L      ++      + +K+K++         A ++       S
Sbjct: 151 DLVA-----AGEHSGSLDLVFDRVATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 202

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P +  + 
Sbjct: 203 LLLLFVVPQFEEIF 216


>gi|331651002|ref|ZP_08352030.1| protein transport protein HofC [Escherichia coli M718]
 gi|331051456|gb|EGI23505.1| protein transport protein HofC [Escherichia coli M718]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGIMLTIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|257095698|ref|YP_003169339.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048222|gb|ACV37410.1| type II secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 412

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 13/178 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + + +K  A F              ++AG+P+     ++     +P V      +     
Sbjct: 67  RKISEKDIALFTRQL-------ATMMKAGVPLLQTFEIVGRGHDNPAVGKLLLDIKADVE 119

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SLS++  +     PL         +    +  G L   L  L+        +K+K++
Sbjct: 120 TGSSLSQAFRK----YPLH-FDLLYCNLVAAGEQAGILESLLDRLATYKEKMIAIKSKIK 174

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +      A   +   +   +   V             D      + +A +  ++    
Sbjct: 175 SALFYPVAIIVVAFIITAVIMIFVIPAFKEVFKSFGADLPAPTQIVIAMSDFVVDYWW 232


>gi|159903363|ref|YP_001550707.1| Type II secretory pathway, component PulF [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888539|gb|ABX08753.1| Type II secretory pathway, component PulF [Prochlorococcus marinus
           str. MIT 9211]
          Length = 385

 Score = 38.1 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 58/163 (35%), Gaps = 8/163 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +++G+P++  + ++     +    +    +      G  LS  + R+   + 
Sbjct: 49  FFRQLSVMLQSGVPLAQGLELLSENMINKKFAACIFDISRRLSGGQELSSCL-RIYPRI- 106

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +  +  +    + GG LS+ L  ++ +L     +K ++    +       +  ++ 
Sbjct: 107 ---FAPITIGLIEAGEAGGILSKVLERIALLLEANAKLKGQITGALVYPLVVLVLAVTIS 163

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGH--MLLGVAAAFMLIGIMV 178
             +   +  T     + L  +  G    +L ++      G +V
Sbjct: 164 LALLIFIVPTFKELFDGLGAELPGLTAFMLLLSNIVTSTGFLV 206


>gi|456044|gb|AAC36925.1| homologous to PilC of Pseudomonas aeruginosa [Escherichia coli]
          Length = 380

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 42  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 101

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 102 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 152

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 153 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 212

Query: 177 MVMRL 181
           ++MR 
Sbjct: 213 LLMRR 217


>gi|62178711|ref|YP_215128.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224581987|ref|YP_002635785.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126344|gb|AAX64047.1| putative component in type IV pilin biogenesis [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466514|gb|ACN44344.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713164|gb|EFZ04735.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 400

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +    
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILAMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|39996883|ref|NP_952834.1| type IV pilus biogenesis protein PilC [Geobacter sulfurreducens
           PCA]
 gi|39983771|gb|AAR35161.1| type IV pilus biogenesis protein PilC, putative [Geobacter
           sulfurreducens PCA]
 gi|298505896|gb|ADI84619.1| type II secretion system protein PulF [Geobacter sulfurreducens
           KN400]
          Length = 402

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++AGLP+  A+  ++ +     +      V E    G++LS+++ +  +  P    
Sbjct: 72  LLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALEKHTKVFP---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +   +    +  G+L   +      L+  + ++ +           A ++      ++
Sbjct: 128 HLYVASVR-AGERTGDLQLTIRRYIAFLKRVEEVRKR---FISALVYPAILVTVATLAIT 183

Query: 142 TLVYFTSPGY 151
            L+ +  P +
Sbjct: 184 FLLVYVVPTF 193


>gi|150016556|ref|YP_001308810.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149903021|gb|ABR33854.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 371

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 30  GLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVI 88
           G+ +++A+ ++    S  + +     V+E    G SLS+  S      P     FF  +I
Sbjct: 51  GIRITEALDLVADILSSKIYKDSLYGVLELIKQGSSLSQGFSEFKDLYP----EFFIGII 106

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTS 148
           S+  +  G L E L  LS        +K +++   +      +I  S+      LV    
Sbjct: 107 SI-GENTGKLYEVLKGLSVYYDKSLFIKKEIKNACI---YPMFIFISMILLSIFLVNEVI 162

Query: 149 PGYMNVL 155
           P +  + 
Sbjct: 163 PNFFEIY 169


>gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec]
 gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec]
          Length = 519

 Score = 38.1 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +   +R+G     A+ V+   +     S+ +        G+   E+  R+
Sbjct: 296 VAACLRSGATTQHALEVVGVATGGAAGSQLKAAGRAMRRGVPFDEACDRL 345



 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 38/115 (33%)

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           +R++       +   +T   V    G  L+     L+   R       ++ +     ++S
Sbjct: 139 ARLLARCEAPALRQLATAYRVCRLAGVRLAPVATMLADAARADAARADELASALAGPRSS 198

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
             ++  LP     L        + VL+    G   L       L G+  +R + +
Sbjct: 199 GRLVAGLPLLGLALGALVGASPVEVLLTGSAGRACLTAGVLLDLAGLRWLRRIAD 253


>gi|56459562|ref|YP_154843.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR]
 gi|56178572|gb|AAV81294.1| Type II secretory pathway, PulF-like [Idiomarina loihiensis L2TR]
          Length = 392

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 1   MKHLIKKRTAKFLDDFP---NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVI 56
           +K L K++              L      + +GLP+S+A+   + ++    +R      I
Sbjct: 41  IKRLSKRQRKLIRPKLSLWYILLQQTASLLESGLPLSEALRHSICETKSRSLRWLIEDCI 100

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
            +   G S S +++    ++P  +++  +       +  G L++AL  L  +  +++  +
Sbjct: 101 RSIEHGFSFSRALTYYEHWLPKADINAIAWA-----EQNGQLADALQQLQEL--EKRQHQ 153

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
            K Q      +    ++         ++ +  P +  + 
Sbjct: 154 LKKQLTKA-LRYPVIVLLVAAGVCFMMMGWVLPAFAQLF 191


>gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 409

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR---------SEF 52
           K  ++K   + + D+P+ +  ++  + AGL V  +   IV    +  R          E 
Sbjct: 249 KFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWESIVKDYENEYRENNEKRYAYEEM 308

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL---------- 102
            +  E    G   +       R   L++    ++++    + G +    L          
Sbjct: 309 AKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLEQNRRSGISNLHTLLSMESQSAWD 368

Query: 103 ANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             L+   R+ + +  K+            ++  +P  +   
Sbjct: 369 ERLNLARREGEELNTKLLLPLFIMLLIVMMMIIVPALLIFY 409


>gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 268

 Score = 38.1 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 7   KRTAKFLDDFPNALD----IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           ++  +F DD    L     ++      G+   D + +++  +   +R    R  +     
Sbjct: 108 QKRKRFEDDLRFGLRRVKMLMASLYERGITPEDMLPLLISATDGALRQLLERAYQRMQTT 167

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDR--KNMKAKV 119
            +L+++++ M +   L E+   ++V     +  G +L   L  ++   R +   N++ + 
Sbjct: 168 DTLADALTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRA 227

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
           +   M          +LP      +      +
Sbjct: 228 ERKRMSVLFEVIAFIALPTIFLVGILILMRAW 259


>gi|229543673|ref|ZP_04432733.1| type II secretion system protein [Bacillus coagulans 36D1]
 gi|229328093|gb|EEN93768.1| type II secretion system protein [Bacillus coagulans 36D1]
          Length = 401

 Score = 37.8 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      ++AG+ V D+  ++  Q+S   ++     V E    G+ LS++ ++
Sbjct: 61  LQDFVIFLRQFSTLLKAGVTVVDSTNILASQTSSKTLKKTLLAVEEDLRGGIPLSQAAAK 120

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +         F  ++    + GGNL   L  L+     +   + KV++        A+
Sbjct: 121 HKKVF----TPMFINMVY-AGEAGGNLDGTLERLATYYEKQHRTRQKVRSALT---YPAF 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           +       V  ++    P ++++L
Sbjct: 173 VGVMAIVVVIFMLVKIVPTFVSML 196


>gi|302864941|ref|YP_003833578.1| hypothetical protein Micau_0435 [Micromonospora aurantiaca ATCC
           27029]
 gi|315501226|ref|YP_004080113.1| hypothetical protein ML5_0410 [Micromonospora sp. L5]
 gi|302567800|gb|ADL44002.1| hypothetical protein Micau_0435 [Micromonospora aurantiaca ATCC
           27029]
 gi|315407845|gb|ADU05962.1| hypothetical protein ML5_0410 [Micromonospora sp. L5]
          Length = 187

 Score = 37.8 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
              V      GL +   +      +             +  Q G  L++ L  +    R 
Sbjct: 53  LAAVAADLRAGLPVDGGVDDGPGRV----ARLARAAGRLADQTGAPLADLLERIEADARA 108

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
                A   A +  A+A+AW++ +LP     L Y      + VL++ P G      A   
Sbjct: 109 ADRGLAAAAAQAAGARATAWLLAALPLGGIGLGYGIGVDPVAVLLHTPVGAGSAVAAVVL 168

Query: 172 MLIGIMVMRLM 182
            + G++    +
Sbjct: 169 QVGGLLWAERL 179


>gi|196231539|ref|ZP_03130397.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196224392|gb|EDY18904.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 406

 Score = 37.8 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   V AGLP+   +  +  Q+    ++  RR+I      +   +S    +   P     
Sbjct: 69  LATMVDAGLPLVAGLTALYEQADPKRQAGLRRIIGEVSALVQQGDSFFEAISKHPSVFNR 128

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            + +++    + GG L+E L  L+  L     +K KV++          I+  +  C++T
Sbjct: 129 LYVSMVK-AGESGGLLAEILDRLATFLESAARLKKKVKSAMTYP----VIVLCIALCITT 183

Query: 143 LVYF 146
            +  
Sbjct: 184 FLIV 187


>gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 7   KRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64
           +   K         ++ +  +VR+GLP+S A++ +   + +  ++S    +    H G++
Sbjct: 53  RFRQKINPQDIVELIENLHLTVRSGLPISSALSDLAKDADNNHLQSVLENISNRVHAGMT 112

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           LS+++SR         V+     + +  + G  L   L + +  ++   ++  K +    
Sbjct: 113 LSKALSRHSGIFSDITVNL----VRIGEETG-KLDNTLKDAAEHMKKMNDLTTKTK---S 164

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFM 172
                ++ +  +   +   +    P  ++   +      P   +++G++  F 
Sbjct: 165 ALIYPSFALVGMILTMVFWLVAVMPKMISAFKSFQIDLPPATKLIMGMSGFFQ 217


>gi|291523558|emb|CBK81851.1| Type II secretory pathway, component PulF [Coprococcus catus GD/7]
          Length = 404

 Score = 37.8 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D        V    AG+P+ +A+ ++  Q+ +  ++     V+     G +L++S+   
Sbjct: 63  RDLSVFCRQFVSITEAGVPMKEALQMLAEQTENKWLKRAIAEVLTNVEKGNTLADSMMAF 122

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P         ++    +  G+L  + + ++        ++A +   ++       +
Sbjct: 123 PDIFP----GMLVNMVR-AGEASGSLELSFSRMATHFEKEAKLRATIMKATI---YPIIL 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA 169
           I +    V+ ++ F  P ++++  +       L +A 
Sbjct: 175 ICAAIGVVAVMLLFVIPIFVDMFADLDVQMPALTLAV 211


>gi|270308518|ref|YP_003330576.1| type II secretion system protein [Dehalococcoides sp. VS]
 gi|270154410|gb|ACZ62248.1| type II secretion system protein [Dehalococcoides sp. VS]
          Length = 401

 Score = 37.8 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 16/163 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G  +  ++ ++  Q+++ + R     ++     G SLS ++S+  +  P    
Sbjct: 71  LALLLESGTDIVTSLELLQEQTTNKLFRDIIGEIVNDIRGGSSLSLAMSKHPKAFPP--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    + GG+L   L NL+  ++     + K+++          +       + 
Sbjct: 128 --LYHRVIAAGEQGGSLEIVLRNLANFVQRNVETEKKIKSALT---YPGVVAVVGILVLL 182

Query: 142 TLVYFTSPGY------MNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +V F  P +      M   +  P   +L+G++  F   G+ V
Sbjct: 183 LMVTFVLPAFTSLYSQMGTELPTPT-KILIGLSDFFEAWGLYV 224


>gi|300931769|ref|ZP_07147069.1| type II secretion system F domain protein [Escherichia coli MS
           187-1]
 gi|300460429|gb|EFK23922.1| type II secretion system F domain protein [Escherichia coli MS
           187-1]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHNLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|254283586|ref|ZP_04958554.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR51-B]
 gi|219679789|gb|EED36138.1| type IV pilus biogenesis protein PilC [gamma proteobacterium
           NOR51-B]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 7/164 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +  +R     +      G  L+ +  +  +Y      
Sbjct: 72  MATMMKAGVPLVQSFDIVSEGVENESMRDLVTTIKNDVAAGGGLANAFEKHPKYFD---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F + +    +  G L   L  ++      + +KAK++       A   +   +   + 
Sbjct: 128 DLFCS-LVAAGENSGTLETMLDRVATYKEKTEQLKAKIKKALTYPIAVVVVAIIVTGILL 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             V  T          D  G   L V     ++    + ++I  
Sbjct: 187 VKVVPTFAETFRGFGADLPGFT-LFVLGISEVVQKWWLAILIGI 229


>gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1]
 gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 299

 Score = 37.8 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66
           +F     + +D++    R G+  + ++              F R+ E        G +  
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++R+ + + L E+   + ++++    G ++  +L   +  LR  +    +  A     
Sbjct: 213 NALTRVSQELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATE 272

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  + G     +  L+ 
Sbjct: 273 KLAMPLAGLAGLFIMLLLI 291


>gi|188495497|ref|ZP_03002767.1| type IV pilus assembly protein PilC [Escherichia coli 53638]
 gi|188490696|gb|EDU65799.1| type IV pilus assembly protein PilC [Escherichia coli 53638]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|226944937|ref|YP_002800010.1| type II secretion system protein F [Azotobacter vinelandii DJ]
 gi|226719864|gb|ACO79035.1| Type II secretion system protein F [Azotobacter vinelandii DJ]
          Length = 396

 Score = 37.8 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 11  KFLDDFPNAL--DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSE 67
           +  + FP  L    +   + AGL + DA+  +   +S    R     ++   + G SLS+
Sbjct: 53  RRREAFPLVLFSQELTTLLNAGLALIDALESLAEKESDAQARKILADLVRLLYEGKSLSQ 112

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++       P          +   S+  G + +AL            ++ K+        
Sbjct: 113 ALGEFPAVFPP-----LYVALVQSSEKTGAVGDALGRYVAYRTRMDEVRQKI------VS 161

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIN---DPRGHMLLGVAAAFMLIGIMV 178
           AS + +  L      L++    GY+    +   +  G  L  ++   + +G  +
Sbjct: 162 ASVYPLLLLVVGNGVLLFLI--GYVVPRFSLVFEGLGSNLPWLSRVLLSVGQFI 213


>gi|330962485|gb|EGH62745.1| general secretion pathway protein F [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 324

 Score = 37.8 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG P+  A+A+   QS  P + S    ++E    G SLS ++         +  S F   
Sbjct: 1   AGQPLESALALQARQSDRPAMASLLNGLLERVKGGSSLSVAMG-----AEHRTFSNFYLS 55

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +    +  G L E L+ L+  L   + M+     L       A+++  +   +  L+ + 
Sbjct: 56  LVRAGEAAGMLGETLSQLATNLERSRAMR---SDLISALIYPAFLVCGVFGSLVLLLTYV 112

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            P ++ +  +      L+      M +GI +
Sbjct: 113 VPQFVPIFRDLNVPLPLITECI--MALGIFL 141


>gi|295110973|emb|CBL27723.1| Type II secretory pathway, component PulF [Synergistetes bacterium
           SGP1]
          Length = 411

 Score = 37.8 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+AGL +S A+ +I  Q    V +     V      G+ +S+++        
Sbjct: 78  FFRQMATMVQAGLTLSMAIDIIAEQERSMVFKDVLLDVKGRLDRGIPMSQAM-----RAH 132

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               +     +    + GG L  +L  ++ +L  +  +K+K+++
Sbjct: 133 PSVFNNMMISLVQAGEEGGLLDNSLERVAGLLEKQAALKSKIRS 176


>gi|154499691|ref|ZP_02037729.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
           29799]
 gi|150271289|gb|EDM98546.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
           29799]
          Length = 310

 Score = 37.8 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 69/162 (42%), Gaps = 5/162 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++           ++   A+ II  S +R    +  AV   +   ++PV++ F   +   
Sbjct: 118 LRSTAASYKKHLNEELETAISIITTSYLRT-EDLIRAVKENLPYINEPVKANFEAFVYEA 176

Query: 60  HL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            L   +L+ +I+ +   +P +    +  ++ +Q Q   ++   L  +++   D + ++++
Sbjct: 177 ELINANLTSAINSLKMKVPNRVFHEWCNIL-IQCQSDRSMKNTLPTIAQKFSDVRVVQSE 235

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDP 159
           ++A+    +  A  +  L      L+YF +  + + L    P
Sbjct: 236 LEAMMQGPRREAITMMFLVIANVPLLYFLNEDWFHTLIFTTP 277


>gi|83647943|ref|YP_436378.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
           2396]
 gi|83635986|gb|ABC31953.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
           2396]
          Length = 406

 Score = 37.8 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++      P   E    +      G S + ++ +  +Y      
Sbjct: 76  MATMMKAGVPLVQSFDIVADGLEHPSLKELVLDIKNEVAAGNSFAGALKKHPKYFD---- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F  +I    +  G L   LA ++  L   + +K KV+ 
Sbjct: 132 DLFCNLID-SGEKSGALETMLARVATYLEKTEILKKKVKK 170


>gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG  +  A  V+  ++ +  ++    ++ +    G +L  ++S+  +       S   
Sbjct: 76  LTAGFSIIKAFKVMGQKNRNRTLKKALLKIHDDIEQGQALWVALSQHPKV-----FSSIY 130

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +    ++GG L   L NLS  L   +++ AK++     +     I       +  ++ 
Sbjct: 131 INMIKAGEMGGTLETVLKNLSHHLEREQDINAKIK---AASIYPLIITLMALLVIFFIIS 187

Query: 146 FTSPGYMNVL 155
           F  P ++NV 
Sbjct: 188 FIMPAFVNVF 197


>gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629]
          Length = 290

 Score = 37.8 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           ++K++  +  ++    +  I + ++    V   +      +    R E   V        
Sbjct: 137 MLKEKREQIEEELYRFVSTITQELKNSRDVLSMLEHYKENAGAAFRKELDIVCADMRS-S 195

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    +   ++S     + +    G + +     L+   +  +  + K +A  
Sbjct: 196 SYEAALTRFEARLNSPQLSDVVRGL-IGVLRGDDGAVYFQMLTHDFKQTEFQRLKAKAAK 254

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  K   +    L   ++T         +  +
Sbjct: 255 IPPKIRVYSFAMLMCFLATYFAIIIYEIIRSM 286


>gi|229065597|ref|ZP_04200827.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603]
 gi|228715666|gb|EEL67459.1| hypothetical protein bcere0026_56000 [Bacillus cereus AH603]
          Length = 288

 Score = 37.8 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IK+       + P  L  +++ ++      +AV      +   +RS    +     
Sbjct: 131 LKRKIKQAIEARKFELPEYLIPLLQLLKT-HTTLEAVKKAEIYAGRHLRSYVSTLTAELE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 190 MYAGSDQPFRNFAASLNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|262198000|ref|YP_003269209.1| type II secretion system F domain protein [Haliangium ochraceum DSM
           14365]
 gi|262081347|gb|ACY17316.1| Type II secretion system F domain protein [Haliangium ochraceum DSM
           14365]
          Length = 403

 Score = 37.8 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F       +D       AGLP+   + ++ GQ+ +     F +V+ +   GL    S S 
Sbjct: 66  FTRQLATMID-------AGLPLVQCLDILAGQAEN---KAFAKVLFSVKSGLESGASFSE 115

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            +R  P +        +    ++GG L   L  L+  +     +K +V+           
Sbjct: 116 SLRKHP-KVFDQLYINLVAAGEVGGILDTILLRLTAYIEKAVKLKRQVKGALT---YPIG 171

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           I+      V+ ++    P     + +   G  L
Sbjct: 172 ILVIALGVVAVMLGKVIPS-FQEMYSSFEGAAL 203


>gi|251796112|ref|YP_003010843.1| type II secretion system protein [Paenibacillus sp. JDR-2]
 gi|247543738|gb|ACT00757.1| type II secretion system protein [Paenibacillus sp. JDR-2]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   +RAG+ + +A  ++  Q+   P++     V      G+  S+++    R  P
Sbjct: 68  FCRQFSTLIRAGVTIVEATNILAAQTESKPLKKALVDVSSALLRGIPFSQAVQEHKRIFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ-ALSMEAKASAWIIGSL 136
                 F ++I    + G +L   L  L+         K K++ A++  A      I S+
Sbjct: 128 ----PLFVSMIRAGEETG-DLEGTLDRLALFFEKAHTTKEKIKSAMTYPAVVGLMSIASV 182

Query: 137 PFCVSTLV 144
            + +  +V
Sbjct: 183 IYLLQGVV 190


>gi|328952522|ref|YP_004369856.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452846|gb|AEB08675.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 404

 Score = 37.8 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 26/196 (13%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQH 60
           + +  +    F ++  + L       +AGLP+  ++  +    S   ++    +++    
Sbjct: 61  RRVSSREVVLFTEELADLL-------KAGLPLDRSLQALKEVTSRSGMKEVINQILRDLQ 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +LS+S+SR   + PL         +    + GG L E+L+ LS  L+     ++ + 
Sbjct: 114 GGKTLSDSLSRHKAFSPLY------VSLIQAGETGGFLDESLSRLSDYLQTVSEFRSYLF 167

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM------------NVLINDPRGHMLLGVA 168
              +     A +       +   V      +              +L           V 
Sbjct: 168 TALIYPMILAGMGSLSLVLMLLYVVPRFESFFQEMGQELFWSTRMLLWISQMFRSYWWVL 227

Query: 169 AAFMLIGIMVMRLMIN 184
           A F+ I I  +  ++ 
Sbjct: 228 ALFLAILIWSISRLLR 243


>gi|254522252|ref|ZP_05134307.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
 gi|219719843|gb|EED38368.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
          Length = 338

 Score = 37.8 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + L+++R  +           +   + AG P+  A+++++G   D   R     + +   
Sbjct: 56  RSLLRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ R          S     +    + GG+L E L  L+  L   + ++ KV 
Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVI 169

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +       ++G     +   V          L
Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204


>gi|170730041|ref|YP_001775474.1| general secretory pathway protein F [Xylella fastidiosa M12]
 gi|167964834|gb|ACA11844.1| general secretory pathway protein F [Xylella fastidiosa M12]
          Length = 405

 Score = 37.8 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +V  + AG P+  A++++     +   R     V +    G  LS ++ R        
Sbjct: 73  QQLVALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G     
Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   V          L +        GV A    IG   
Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225


>gi|215405704|ref|ZP_03417885.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
          Length = 87

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 102 LANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
           +    R + +R+   A+V A    A+ASA I+  LP     L        ++ L+    G
Sbjct: 1   MRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVG 60

Query: 162 HMLLGVAAAFMLIGIMVMRLMIN 184
             LL V       G++    + +
Sbjct: 61  GWLLVVGLTLACAGLLWSDRITD 83


>gi|59713079|ref|YP_205855.1| general secretion pathway protein F [Vibrio fischeri ES114]
 gi|197336415|ref|YP_002157257.1| general secretion pathway protein F [Vibrio fischeri MJ11]
 gi|59481180|gb|AAW86967.1| general secretion pathway protein F [Vibrio fischeri ES114]
 gi|197317905|gb|ACH67352.1| general secretion pathway protein F [Vibrio fischeri MJ11]
          Length = 404

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+ +++  +  Q     +RS    V      G  L+ES +           
Sbjct: 74  LATLVQAGMPLEESLKAVAEQGEKAHIRSMMMGVRSRVIEGYPLAESFADYPHVFD---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
             F ++++   +  G+L   L  L+    +R+ M++K+ QA+      +   I  + F +
Sbjct: 130 DLFCSMVA-AGEKSGHLDTVLNRLADYAENRQKMRSKLQQAMIYPIMLTLIAIAVISFLL 188

Query: 141 STLV 144
           +T+V
Sbjct: 189 ATVV 192


>gi|10567797|gb|AAG18588.1|AF297457_3 pilin biogenesis protein PilC [Pseudomonas fluorescens]
          Length = 383

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           KR              +   ++AG+P+  A  +I     +P +R     V +    G S 
Sbjct: 39  KRIKPLDIAL--FTRQMATMLKAGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSF 96

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           + ++ +  +Y    E+      +    +  G L   L  ++      + +KAK++ 
Sbjct: 97  AAALRKCPQYFD--ELY---CNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKK 147


>gi|330952551|gb|EGH52811.1| type II secretion system protein [Pseudomonas syringae Cit 7]
          Length = 363

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   +RA +   +A+  +   ++  +R           +G +  E++       P 
Sbjct: 230 FLLNIAVMLRANIDPLEALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHRFPD 289

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F  V+S       + S A+   S +     ++K   +     +  S  +IG L  
Sbjct: 290 HEAIQFLIVLS----TTHSFSAAVHRYS-LRWLEISLKQVERYAKSLSLVSMVLIGLLMI 344

Query: 139 CVSTLVYFT 147
            V    Y  
Sbjct: 345 LVMVGAYSM 353


>gi|225024579|ref|ZP_03713771.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
           23834]
 gi|224942730|gb|EEG23939.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
           23834]
          Length = 411

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 20/190 (10%)

Query: 2   KHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRV 55
           K + +KR  +     F              ++AGLPV  A  ++    S+  +      V
Sbjct: 61  KKVREKRITQGDITVFTRQL-------ATMMKAGLPVMQAFDIVAKGHSNASMTKLLMEV 113

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
                 G S++ +  +  +Y        F   +    + GG L   L  L+        +
Sbjct: 114 RNDIEQGTSMANAFRKHPKY-----FDDFYCNLVDAGEAGGVLESLLDKLAVYKEKTLAI 168

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFML 173
           K K+++      A   +   L   +   V        + +  +       ++G++   + 
Sbjct: 169 KKKIKSALTYPIAVVVVAIVLVIIMMMFVLPEFKKVYDGMNAEMPALTQFMMGISDFMVA 228

Query: 174 IGIMVMRLMI 183
            G MV+  M+
Sbjct: 229 WGWMVIIAMV 238


>gi|221632416|ref|YP_002521637.1| amidohydrolase family protein [Thermomicrobium roseum DSM 5159]
 gi|221156656|gb|ACM05783.1| Amidohydrolase family [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISV 90
             ++ A+A I  ++ DP      R  + Q  G+    ++  +   +P   V   +  I +
Sbjct: 153 NSLALAIAGIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRL 212

Query: 91  QSQL 94
             + 
Sbjct: 213 AGET 216


>gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
 gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
          Length = 445

 Score = 37.8 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 5   IKKRTAKFLDDF---PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51
            ++R           P  ++ ++  +  G+ V  A+  +  +     R           +
Sbjct: 284 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 343

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
            ++       G+  +++   M + + L      S ++      G
Sbjct: 344 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 387


>gi|239907482|ref|YP_002954223.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1]
 gi|239797348|dbj|BAH76337.1| general secretion pathway protein F [Desulfovibrio magneticus RS-1]
          Length = 409

 Score = 37.8 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMP 77
           A  ++   + AGLP+  A+A ++ Q         F  ++E    G   S +++      P
Sbjct: 75  ATQVLATLLEAGLPLDKALAALIEQMRAGRGKWVFSHILERIREGQDFSTALAAYPAVFP 134

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
              VS   +      +  G L   L NL+  L  +  +   +QA             ++ 
Sbjct: 135 PTYVSMVRSA-----EATGMLPIVLGNLAEYLDRQTQLARTLQAALAYPAFMFVFGLAVM 189

Query: 138 FCVSTLVY 145
             +   V 
Sbjct: 190 ALLLAYVI 197


>gi|153003600|ref|YP_001377925.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
 gi|152027173|gb|ABS24941.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
          Length = 409

 Score = 37.8 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D   A   +     AG+P+ +A+  +V Q     ++     V +  + G +L+++++  
Sbjct: 69  RDLAVATRQLAVLAHAGIPLVEALTALVDQVEHERLKRVLGDVKQRVNEGSALADALAAH 128

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            R       S     +    +  G L   L  L+     +  +++K+ A +M    +  +
Sbjct: 129 PRV-----FSTLYVNMIRAGESSGALEIVLVRLADFTESQARLRSKI-AGTMAYPIAMMV 182

Query: 133 IGSLPFCVSTLVYF 146
           IG+L   +   V  
Sbjct: 183 IGTLIMGILFTVVI 196


>gi|94968418|ref|YP_590466.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550468|gb|ABF40392.1| type II secretion system protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 404

 Score = 37.8 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 18/178 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           F   F   +D       AGLP+   + ++ G         F++ +      +    ++  
Sbjct: 67  FFRQFSVMID-------AGLPLVQCLEILAGNQE---SQAFQKALNGVRTTVEGGSTLGN 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
            +R  P +        +    + GG L   L  L+  +     +KA V+           
Sbjct: 117 AMRGYP-KIFDDLMVNMVDAGETGGILDTILQRLATYVEKAVKLKAAVR---SALIYPVS 172

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +I      V  L++   P + N+   +  P       V      +G      M+   V
Sbjct: 173 VITIAVLIVGLLLWKVVPIFANLFVGLGAPLPLPTRIVIGISNFLGSFW--WMVPIMV 228


>gi|82542710|ref|YP_406657.1| type IV pilin biogenesis protein [Shigella boydii Sb227]
 gi|81244121|gb|ABB64829.1| HofC [Shigella boydii Sb227]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++ GQ      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEAF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|302342771|ref|YP_003807300.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301639384|gb|ADK84706.1| Type II secretion system F domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 359

 Score = 37.8 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 12/174 (6%)

Query: 7   KRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLS 64
           +R      ++  N  + +   V AGLP+   +  +     S  VR+    ++     G S
Sbjct: 12  RRAKPLRAEELCNFTEGLAVLVGAGLPLDHVLETVSFMHDSGRVRALTAEMLLAVRGGAS 71

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+ +   M     +   ++    +    +L G L++ L  L++ LR    +K  +  + +
Sbjct: 72  LTRA---MAEQNGVFSPAYLG--LVQAGELSGALAKVLDELAKGLRRNLEIKRHLLTVLL 126

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                A ++      +  ++ +  P ++ V   +     L   AA  + +G  +
Sbjct: 127 ---YPAVLLAVSFLAILFIMIYVLPTFVGVF--NDMSTPLPPTAAFLLGLGSFM 175


>gi|312194222|ref|YP_004014283.1| type II secretion system F [Frankia sp. EuI1c]
 gi|311225558|gb|ADP78413.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
          Length = 501

 Score = 37.8 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +   + AG  V  A+         P+ +E R       LG  
Sbjct: 343 VAACLVAGATVPAALEATGDGVGGPLGAELRATARGLRLGAP 384


>gi|182625667|ref|ZP_02953436.1| putative pilus biogenesis protein [Clostridium perfringens D str.
           JGS1721]
 gi|177909069|gb|EDT71544.1| putative pilus biogenesis protein [Clostridium perfringens D str.
           JGS1721]
          Length = 339

 Score = 37.8 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+P+  ++ +I     D    E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|327183251|gb|AEA31698.1| Competence protein [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score = 37.8 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 26/179 (14%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69
            +     LD +  S+  G  +  ++ +         P R E   ++      G + S  +
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLISSIEL----MPALWPKRKELMGKLAMRMKEGANFSSEL 69

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++           FS     Q       GNL+E L  L+ + R ++    K++    E 
Sbjct: 70  VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   +   +  +  F S  + +   ++  G +++ V    +L+GI  +  ++  
Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLVLVGIYFLAKIVTL 173


>gi|314972764|gb|EFT16861.1| type II secretion system F domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 297

 Score = 37.8 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q + G +L ++       LRD   ++ + ++ ++  +   W +    
Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|117924239|ref|YP_864856.1| type II secretion system protein [Magnetococcus sp. MC-1]
 gi|117607995|gb|ABK43450.1| type II secretion system protein [Magnetococcus sp. MC-1]
          Length = 408

 Score = 37.8 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVA-VIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           +++    L  +   ++AG+P+   +   I    +  +    ++++     G SL+E+++ 
Sbjct: 68  MEELAEGLTNMAVMLKAGIPLITCLKDTIADHDNSTLSKVGQQLVMRVEGGSSLAEALAA 127

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA-KVQALSMEAKASA 130
             RY P         ++ +  + G +L + + + +   +    ++     AL+       
Sbjct: 128 YPRYFP----DTLVFLVRLGEETG-SLDQTVRDAAAHTQKMDKIRRDTKSALTYPTFMFV 182

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF------MLIGIMV 178
            I G++ F +  +V   +  +    ++ P    ++   +        M+ G+++
Sbjct: 183 AIFGAMFFWIYLVVPPMADMFKQFQLDLPVFTKMVIDGSVVIKANVGMIFGVLL 236


>gi|197250502|ref|YP_002145129.1| type IV pilin biogenesis protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214205|gb|ACH51602.1| protein transport protein HofC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
            +     +  +   + AGL +S+ + ++  Q      ++  R +      G+  S ++  
Sbjct: 57  EEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALVS 116

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +  P      + T+I    +L G L+E    L+   R +K  +    ++    +    
Sbjct: 117 WPQVFP----PLYQTMIRT-GELTGKLAECCFELA---RQQKAQRQITVSVKKALRYPVI 168

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL--INDPR 160
           I+      V  +++F  P +  +    N P 
Sbjct: 169 ILTMAALVVFAMLHFVLPEFAAIYRSFNTPL 199


>gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing
           protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing
           protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 434

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 5   IKKRTAKFLDDF---PNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR----------SE 51
            ++R           P  ++ ++  +  G+ V  A+  +  +     R           +
Sbjct: 273 KEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAALEAVATEYEKEQRRGNKKEIFVYEQ 332

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG 95
            ++       G+  +++   M + + L      S ++      G
Sbjct: 333 IKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVLLVQSITRG 376


>gi|297748700|gb|ADI51246.1| General secretion pathway protein F [Chlamydia trachomatis D-EC]
 gi|297749580|gb|ADI52258.1| General secretion pathway protein F [Chlamydia trachomatis D-LC]
          Length = 425

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 98  LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 154

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 155 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPVILLVFSCAVVVFFL 212

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 213 IGVIPTLKETFEDM 226


>gi|325290043|ref|YP_004266224.1| Type II secretion system F domain protein [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965444|gb|ADY56223.1| Type II secretion system F domain protein [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 387

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              ++A + +   +  IV Q  + +R  +++ V      G +LS+++        +    
Sbjct: 70  ANLLQAEVSLLKVLDFIVKQEKNDLRKIQWQNVSLDVQSGHTLSQAVQE-----NIPAFG 124

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            F+  +    +  G L+EA   ++    +    + KV+        +A     L F VS 
Sbjct: 125 SFAQALIQAGEKSGTLAEAFGRMAGQFEEEYFYREKVK--------TALFYPVLLFLVSM 176

Query: 143 LVYFTSPGYMNVLIND 158
            V       +  +   
Sbjct: 177 AVLLMLSTLVLPMYES 192



 Score = 35.1 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
               +   I+ R + AG+ V++++  +    + P +      +      G  L  +    
Sbjct: 251 HQLIHFCGILGRLLEAGISVNESLEQLRKTVTGPKLLGFIDDLQVRLLQGQPLDSAFL-A 309

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             Y P +     +       +  G  +E L N+S I +     K +        +    I
Sbjct: 310 NNYFPGETAEILAVG-----EQSGRFAETLLNISVIFKQELGTKME--------RMVKLI 356

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
              +   +S LV F + G +  + +
Sbjct: 357 EPMMILGISFLVGFVALGVLLPVFD 381


>gi|314929715|gb|EFS93546.1| type II secretion system F domain protein [Propionibacterium acnes
           HL044PA1]
 gi|328906786|gb|EGG26557.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
           [Propionibacterium sp. P08]
          Length = 297

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAAHVSDAPLFIQIRQVLNRAALENVDPWNGLDRLADDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q + G +L ++       LRD   ++ + ++ ++  +   W +    
Sbjct: 221 LPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|229918377|ref|YP_002887023.1| type II secretion system protein [Exiguobacterium sp. AT1b]
 gi|229469806|gb|ACQ71578.1| type II secretion system protein [Exiguobacterium sp. AT1b]
          Length = 405

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 68/168 (40%), Gaps = 6/168 (3%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           ++     +      +RAG+P+  A +++ V   S+ ++    +V +    G++ SE+I +
Sbjct: 63  IEHLIMYVRQFATLIRAGVPIVRATSILRVQTESNVLKKALSQVEDDLKEGIAYSEAIKK 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             R       S F + +++  +  GNL EAL  +   L+ + ++K KV +        + 
Sbjct: 123 HPRV-----FSNFFSSMALAGETSGNLEEALDQIGLQLQKQYDVKRKVISALTYPLVVSI 177

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   +   V  T       L  +      + VA +  +     +
Sbjct: 178 VAIGVVAFLMVNVVPTFASIFGQLGGELPLITRIVVAVSDFIAAFWWL 225


>gi|28198639|ref|NP_778953.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
 gi|182681323|ref|YP_001829483.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|28056723|gb|AAO28602.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
 gi|182631433|gb|ACB92209.1| type II secretion system protein [Xylella fastidiosa M23]
 gi|307579773|gb|ADN63742.1| general secretion pathway protein F [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 405

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + AG P+  A++++     +   R     V +    G  LS ++ R        
Sbjct: 73  QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G     
Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   V          L +        GV A    IG   
Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225


>gi|26987369|ref|NP_742794.1| type IV pili biogenesis protein PilC [Pseudomonas putida KT2440]
 gi|24982023|gb|AAN66258.1|AE016254_5 type IV pili biogenesis protein PilC [Pseudomonas putida KT2440]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 4   LIKKRTAK----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIET 58
           L K+R       F              ++AG+P+  A  V+     D    +   R+ + 
Sbjct: 56  LPKRREKADPAGFSRQL-------ATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQD 108

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              GL L++++ R   +      + +  ++ V  Q G  L   L  L+ +L  R+ +  K
Sbjct: 109 VASGLGLADALQRHPAWFD----ALYCNLVRVGEQSG-TLDRQLEQLAGMLEQRRVLHKK 163

Query: 119 VQA 121
           V+ 
Sbjct: 164 VRK 166


>gi|224370108|ref|YP_002604272.1| GspF2 [Desulfobacterium autotrophicum HRM2]
 gi|223692825|gb|ACN16108.1| GspF2 [Desulfobacterium autotrophicum HRM2]
          Length = 409

 Score = 37.8 bits (87), Expect = 0.80,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGLPV  ++ ++V  S +P  +   + +++    G  LSE++       P +  
Sbjct: 79  LTALLEAGLPVDRSLKILVESSENPKFKLIVKDILKLIEGGSDLSEAMG----RYP-EVF 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S F   +    ++GG L   L  L   L   + +   +++  +      +++G     + 
Sbjct: 134 SKFYVNMVKAGEVGGILEMVLERLGIFLETSQELTDYIKSALV---YPLFLLGVGGLSII 190

Query: 142 TLVYFTSPGYMNVLIND 158
            L+ F  P    ++  D
Sbjct: 191 VLMTFVIPK-FAIMFAD 206


>gi|15838119|ref|NP_298807.1| general secretory pathway protein F [Xylella fastidiosa 9a5c]
 gi|9106552|gb|AAF84327.1|AE003981_9 general secretory pathway protein F [Xylella fastidiosa 9a5c]
          Length = 405

 Score = 37.8 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + AG P+  A++++     +   R     V +    G  LS ++ R        
Sbjct: 73  QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G     
Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   V          L +        GV A    IG   
Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225


>gi|332098955|gb|EGJ03906.1| bacterial type II secretion system protein F domain protein
           [Shigella boydii 3594-74]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 30/185 (16%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++ GQ      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLS-RILRDRKNMKAKVQALSMEAKASAWIIGS 135
           P          +       G L+  L      + R +K  +     +    +    I+  
Sbjct: 122 P---------PLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAM 172

Query: 136 LPFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGI 176
               V  +++F  P +  +    N P                    +L+       +   
Sbjct: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANK 232

Query: 177 MVMRL 181
           ++MR 
Sbjct: 233 LLMRR 237


>gi|26987784|ref|NP_743209.1| general secretion pathway protein F [Pseudomonas putida KT2440]
 gi|24982479|gb|AAN66673.1|AE016295_6 type II secretion pathway protein XcpS [Pseudomonas putida KT2440]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V+      L+  
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++R +        +     +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              A ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216


>gi|313497414|gb|ADR58780.1| XcpS [Pseudomonas putida BIRD-1]
          Length = 400

 Score = 37.8 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V+      L+  
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++R +        +     +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              A ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216


>gi|308048084|ref|YP_003911650.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630274|gb|ADN74576.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
           9799]
          Length = 419

 Score = 37.8 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  A+ ++      D VR     ++     G  LS+++         Q  
Sbjct: 88  IATMLLAGVPLVTAIEMVGRSHENDAVRKLLAIILAEVQSGTPLSKAL-----RPHRQYF 142

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L +    ++      + +K+K++ 
Sbjct: 143 DDLYCDLVAAGEHSGTLDQVFDRIATYREKSEALKSKIKK 182


>gi|296120429|ref|YP_003628207.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296012769|gb|ADG66008.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 402

 Score = 37.8 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG+P+  ++ ++  Q+ +  ++     V      G  L++S+            
Sbjct: 71  MSDLLRAGVPLLRSIELLERQTKNQALKRVLEDVRSRVADGGRLADSMKEHPN-----AF 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +  +  I    + GG L ++L+ ++     ++ +K+KV            ++      V 
Sbjct: 126 NKLTVSIVHAGEEGGFLEDSLSRVAVFTEHQEELKSKV---VAAMSYPLVLMVLGTIVVV 182

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  PG    + + 
Sbjct: 183 GMIVFFVPG-FEPMFDS 198


>gi|261338902|ref|ZP_05966760.1| hypothetical protein ENTCAN_05099 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318726|gb|EFC57664.1| protein transport protein HofC [Enterobacter cancerogenus ATCC
           35316]
          Length = 398

 Score = 37.4 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   ++AGL +S ++A++  Q   P  R+  + + +    G + SE++ +     P  
Sbjct: 64  QQLATLLQAGLTLSHSLAMLAQQHPLPQWRALLQAIADDLSEGCAFSEALKQWPEVFP-- 121

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPF 138
                   + V     G L+  L    R L  ++  +  ++A  M+A +    I+     
Sbjct: 122 -------PLYVAMVKTGELTGKLETCCRQLAQQQKSQQLLRAKVMKALRYPIIILTLAAA 174

Query: 139 CVSTLVYFTSPGYMNVL--INDPRGH----------------MLLGVAAAFMLIGIMVMR 180
            V  +V    P +  +    N P                   ++L V      IG   +R
Sbjct: 175 VVLAMVTLVLPEFAAIYSTFNTPLPWLTQSVMRLSAFIQHHAVVLIVLFITPFIGAYGLR 234

Query: 181 L 181
            
Sbjct: 235 R 235


>gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
           12653]
          Length = 249

 Score = 37.4 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL+I +  +  G+   + ++ IV      VR            G SL ++++  
Sbjct: 103 EEELPAALEIFISGLEVGMNKENIISYIVRTREGVVRDLLYEAQIRLDTGSSLKDALTFA 162

Query: 73  VRYMPLQEVSFFSTVI 88
                      F   I
Sbjct: 163 ADKSLNDHFRRFVKAI 178


>gi|71278502|ref|YP_271220.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H]
 gi|71144242|gb|AAZ24715.1| MSHA biogenesis protein MshG [Colwellia psychrerythraea 34H]
          Length = 408

 Score = 37.4 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 73/184 (39%), Gaps = 20/184 (10%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           L++       +   +R+G+P+  A+  +V  ++   ++     + +    G + S +++ 
Sbjct: 67  LEELIVFCRQMYALMRSGVPILRAINGMVESANSISLKKALTDIGKQLEGGYTFSSALNG 126

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
             +         F +++ V  +  G L +A   L+  L    + + +++      +  + 
Sbjct: 127 HPKIFD----HLFVSLVHV-GENTGQLDQAFLKLTTYLERELDTRKRIK---AALRYPSM 178

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLI----NDPRGHMLLGVAAAF-------MLIGIMVMR 180
           ++ ++   +  L  F  P + N+        P     +  ++         ML+GI V+ 
Sbjct: 179 VLIAIAAAMVILNIFVIPTFANMFTRLGAELPFATRFIIASSNLFINYWHYMLLGIFVVL 238

Query: 181 LMIN 184
           +MI 
Sbjct: 239 IMIR 242


>gi|330872527|gb|EGH06676.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 405

 Score = 37.4 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +R+    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMRALVNSLKQEVSAGNSFATALRQKPEYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++         A ++        
Sbjct: 131 DLFCNLVD-AGEQAGALESLLDRVASYKEKTEKLKAKIKKAMT---YPAAVVVVAVIVSG 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P + +V      G          M+IG+
Sbjct: 187 ILLIKVVPQFQSVF----AGFGAELPGFTLMVIGL 217


>gi|302877538|ref|YP_003846102.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
 gi|302580327|gb|ADL54338.1| Type II secretion system F domain [Gallionella capsiferriformans
           ES-2]
          Length = 403

 Score = 37.4 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 13/178 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K + +K    F              ++AG+P+  A  ++     +P V      +     
Sbjct: 59  KAITQKDITLFTRQL-------ATMLKAGVPLLQAFDIVGKGHHNPSVSRLLFSIKTDIE 111

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G SL ++  +   Y            +    +  G L   L  L+        +K+K++
Sbjct: 112 TGSSLQQAFKKHPLY-----FDDLYCNLIGAGESAGILDSLLERLATYQEKILAIKSKIK 166

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +      +   +   +   +   V        +    D     L  +A +   +    
Sbjct: 167 SALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFIMAISDFFVSYWW 224


>gi|310779619|ref|YP_003967952.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
 gi|309748942|gb|ADO83604.1| Type II secretion system F domain protein [Ilyobacter polytropus
           DSM 2926]
          Length = 400

 Score = 37.4 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+ +     V+  Q   P ++     + +    G S+S ++S+  +Y      
Sbjct: 70  LSTMLEGGVGLLRCFTVLEKQCEKPKLKVVVGEIRQDISSGKSISYALSKHPQY-----F 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140
                 +    +  G L   L  +++     + +K K++     A     I+  L F + 
Sbjct: 125 DSLYVSMVKAGEASGALDTILNRIAQSQEKAEEIKGKIRT----AMIYPSIVLVLSFTIV 180

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
             L+ F  P ++ +  +       L +   
Sbjct: 181 FLLMSFVIPNFVVLFTDTGVPMPSLTLFVI 210



 Score = 35.1 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + +G+P+  A  ++     + +  E  R V +    G ++++ +     + P        
Sbjct: 277 LDSGVPILSAFDIVADTVGNILMGESIREVKDKIKSGHTIAKPLEESGSFPP-----MVV 331

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ V  + G  L + L+ L+    + + ++  ++      +    +I +L   V  +  
Sbjct: 332 NMVDVGEESG-ELVKMLSKLADF--NERELEETIRDSLAAFEPMMILIMALTVGVIVVAM 388

Query: 146 FT 147
           + 
Sbjct: 389 YL 390


>gi|257459470|ref|ZP_05624579.1| type II secretion system protein [Campylobacter gracilis RM3268]
 gi|257442895|gb|EEV18029.1| type II secretion system protein [Campylobacter gracilis RM3268]
          Length = 414

 Score = 37.4 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 62/147 (42%), Gaps = 15/147 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESIS 70
           F       + I    VRAG+P++DA+   V    +  ++ +   V      G+SL+E+ +
Sbjct: 275 FFSTMSRFMLIFTELVRAGIPIADALDTSVLMVDNHTLKEKLSTVKIAVQQGVSLTEAFN 334

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                  L E S    +IS   +  GNL + L N++   +++ +         +    S+
Sbjct: 335 N----TGLYE-SMLIQMIS-AGEQAGNLDKMLGNVTDYYKEKFD--------DIIDNISS 380

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
           ++   + F ++ +V   + G    + +
Sbjct: 381 YVEPIMLFFMAGMVLLLALGIFMPMWD 407


>gi|71274718|ref|ZP_00651006.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|71899601|ref|ZP_00681756.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71164450|gb|EAO14164.1| type II secretion system protein [Xylella fastidiosa Dixon]
 gi|71730643|gb|EAO32719.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 405

 Score = 37.4 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + AG P+  A++++     +   R     V +    G  LS ++ R        
Sbjct: 73  QQLAALLGAGQPLDRALSILTDLPDNEKSRRIIGDVCDIVRGGTPLSIALER-----QHG 127

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G     
Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   V          L +        GV A    IG   
Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225


>gi|237738597|ref|ZP_04569078.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31]
 gi|229424080|gb|EEO39127.1| general secretion pathway protein F [Fusobacterium sp. 2_1_31]
          Length = 345

 Score = 37.4 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  +   +   +++ +   +G ++ +S            +
Sbjct: 15  LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTMGKNIYDSFKPFENTFGSTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +L GN+ E+L ++S+ L    + + K+  + +       ++      VS
Sbjct: 75  YILKIG-----ELSGNIVESLEDISKSLDFDLSQRKKLGGILI---YPIVVVCLTFLIVS 126

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P ++ + 
Sbjct: 127 FLLIFILPSFITIF 140


>gi|94313634|ref|YP_586843.1| Type II secretory pathway, gspf-related transmembrane protein
           [Cupriavidus metallidurans CH34]
 gi|93357486|gb|ABF11574.1| Type II secretory pathway, gspf-related transmembrane protein
           [Cupriavidus metallidurans CH34]
          Length = 413

 Score = 37.4 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+ V DA+  + G          +  ++     G SLS ++       P    
Sbjct: 84  LAALLDAGVGVIDALRTLGGNDRREASARVYGNLLRQLEEGHSLSAAMVNAANVFP---- 139

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    Q GG L+++L   SR     + ++A+V      A   + ++      V 
Sbjct: 140 DVLIACVKASEQTGG-LADSLRRYSRNSATLQALRARV---ISAAIYPSVLLVVGMAVVL 195

Query: 142 TLVYFTSPGYMNVLINDPRGHMLL 165
            L+ F  P +  +L +  R   L+
Sbjct: 196 FLLAFVVPRFAALLEHSGRELPLM 219


>gi|295425961|ref|ZP_06818636.1| competence protein [Lactobacillus amylolyticus DSM 11664]
 gi|295064344|gb|EFG55277.1| competence protein [Lactobacillus amylolyticus DSM 11664]
          Length = 334

 Score = 37.4 bits (86), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 20/176 (11%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            +     LD +  S++ G  ++ ++ ++        R     + +    G SL+  + R+
Sbjct: 16  EEQL-EFLDYLKSSLKNGFSLNSSLELMAVMWPKK-RQLLIALNQRMQNGGSLTTELLRL 73

Query: 73  VRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                      FS     Q       GNL E L+ L+ I R +     +++ L +E    
Sbjct: 74  G----------FSKTTVTQINLALSQGNLVECLSQLTIINRLKNQ---QIKKLWVELSYP 120

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             + G +   +  +  F S  +     ++  G ++L      +  G+     M+  
Sbjct: 121 FVLAGMMIVLLLFMQTFVSTQFQES--SNYTGDIILLSLVVIIGGGVFYFAKMLTL 174


>gi|288959173|ref|YP_003449514.1| carboxyl-terminal processing protease [Azospirillum sp. B510]
 gi|288911481|dbj|BAI72970.1| carboxyl-terminal processing protease [Azospirillum sp. B510]
          Length = 478

 Score = 37.4 bits (86), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV-- 87
           GL +++AV     +   PV SE +  +     G   + S++R V  +          V  
Sbjct: 141 GLSLNEAV----EKMRGPVGSELKVTVRRGEAGEPFTVSLTRAVIKVQSVRFRTEGNVGY 196

Query: 88  ISV---QSQLGGNLSEALANLSRILRDRKN 114
           I +     Q    L +A+A++ + L D+  
Sbjct: 197 IRITSFNEQTQSGLEKAIASIQQQLGDKVQ 226


>gi|85712517|ref|ZP_01043565.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145]
 gi|85693651|gb|EAQ31601.1| Type II secretory pathway, PulF-like [Idiomarina baltica OS145]
          Length = 348

 Score = 37.4 bits (86), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 68/156 (43%), Gaps = 10/156 (6%)

Query: 7   KRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLS 64
           +R  +F    +  AL+ + + +  GLP++ A+ V+  Q+  P ++  ++ +  +   G+S
Sbjct: 5   RRYNQFSTTQWYLALNRLEQLITGGLPLALALGVVAKQTHQPALKRHYQYLQHSVQAGIS 64

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           L+E++S   R      +      I+V  Q G  L   + +L    + ++++ A V+    
Sbjct: 65  LAEALSIEKRRA----LKAAQAGIAVAEQTG-QLPLVMQSLVASWKRQRHISALVKNAL- 118

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
             +    ++      ++  V +  P    +  + P 
Sbjct: 119 --RYPVALLFMALIIITVFVTWVLPTIQQLFDSQPL 152


>gi|77361606|ref|YP_341181.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus
           type IV) [Pseudoalteromonas haloplanktis TAC125]
 gi|76876517|emb|CAI87739.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 406

 Score = 37.4 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A+  +   + +   +     V +    G  LS ++S     M  +  
Sbjct: 74  MYSLLKAGIPIIRAMVGLADTTQNKAFKQVLMEVTKQLEQGRDLSSAMS-----MHNKVF 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S  +  + +  +  G L +A   L+      +  + +++      +   ++I +L   + 
Sbjct: 129 SRLTISMVMVGEGAGRLEDAFYQLAIYFEKEQETRKRIK---AAMRYPTFVICALVGAMI 185

Query: 142 TLVYFTSPGYMNVL 155
            L  F  P + ++ 
Sbjct: 186 ILNIFVIPTFASMF 199


>gi|168214417|ref|ZP_02640042.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
           F4969]
 gi|170714108|gb|EDT26290.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
           F4969]
          Length = 339

 Score = 37.4 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+P+  ++ +I     D    E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|307545368|ref|YP_003897847.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
 gi|307217392|emb|CBV42662.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
          Length = 399

 Score = 37.4 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
             +   + AG P+  A+  +  Q     P R+    + +    G  +S +++R       
Sbjct: 68  QQLATLIAAGQPLDKALTTLHRQLRGARP-RALLEALRDDVKAGRPISAALARHAE---- 122

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              S F   +    +  G L E LA L   L   +N++ +V           +++  +  
Sbjct: 123 -TFSPFYVSLVRAGEASGVLDETLAQLGDDLERSQNLRGEVIN---AMIYPLFLVVGVIG 178

Query: 139 CVSTLVYFTSPGYMNVL 155
            V+ L+ +  P ++ + 
Sbjct: 179 SVALLLTYVVPQFVPIF 195


>gi|148546332|ref|YP_001266434.1| general secretion pathway protein F [Pseudomonas putida F1]
 gi|148510390|gb|ABQ77250.1| general secretion pathway protein F [Pseudomonas putida F1]
          Length = 400

 Score = 37.4 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           +R              +     AG+P+ DA+A +  Q   P       V+      L+  
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPA---LHSVLVALRGSLAEG 109

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
             ++R +        +     +    +  G+L++ L  L+  L   +  + K +   +  
Sbjct: 110 LGLARSLARQGAP-FTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALI-- 166

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
              A ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 167 -YPAVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216


>gi|296133255|ref|YP_003640502.1| Type II secretion system F domain protein [Thermincola sp. JR]
 gi|296031833|gb|ADG82601.1| Type II secretion system F domain protein [Thermincola potens JR]
          Length = 404

 Score = 37.4 bits (86), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+PV   + ++  Q ++P+  E    V+     G +LS++++     M 
Sbjct: 70  FCRQFSTMLNAGIPVMHGLGILTRQMANPLLREATEEVVRDLERGRTLSDAMA-----MH 124

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            +        +    +LGG L +    L+   +    +++KV          A +     
Sbjct: 125 PKVFPALMVNMVEAGELGGILDQVFERLAAYYQREYELRSKV---ISALIYPAVVCLVAM 181

Query: 138 FCVSTLVYFTSPGYMNVL 155
             V  L+ F  P +  + 
Sbjct: 182 LVVGILIVFVLPKFAGLF 199


>gi|229825611|ref|ZP_04451680.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC
           49176]
 gi|229790174|gb|EEP26288.1| hypothetical protein GCWU000182_00973 [Abiotrophia defectiva ATCC
           49176]
          Length = 347

 Score = 37.4 bits (86), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 66/168 (39%), Gaps = 13/168 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             D I   +  G+P+ +   ++  +      +   ++V +    G+S +E++     +  
Sbjct: 15  FCDQIAMILNGGIPIFEGTHILYEEMDEGRTKDILKKVDDNVKSGMSFNEALKESGAFP- 73

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               ++   ++ +  ++ G L + + +LS        +K  ++++         ++G + 
Sbjct: 74  ----NYMCEMVKI-GEMTGKLEDIMRSLSGFYERENLVKNSIRSVIS---YPTVLLGMMA 125

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
             +  LV    P + ++ +    G    G     M   I+V ++++  
Sbjct: 126 VILMVLVGKILPMFEDIFLELDAG---TGTTVGIMNTSILVSKVIVCI 170


>gi|294668186|ref|ZP_06733293.1| bacterial type II secretion system protein F domain protein
           [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309894|gb|EFE51137.1| bacterial type II secretion system protein F domain protein
           [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 352

 Score = 37.4 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 20/195 (10%)

Query: 1   MKHLIKKRTAK-----FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           MK   KKR  +     F              ++AGLP+  A  ++     +P  ++    
Sbjct: 1   MKATRKKRITQEDITVFTRQL-------ATMMKAGLPLMQAFEIVARGHVNPSMTQLLMA 53

Query: 56  IE-TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114
           +      G S+  + ++  +Y        F   +    + GG L   L  L+      ++
Sbjct: 54  VRSDVEQGSSMGAAFAKHPKY-----FDKFYCNLISAGEAGGVLEHLLDKLAVYKEKTQS 108

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND--PRGHMLLGVAAAFM 172
           +K KV++      A   +   L   +   V          +  +  P   +++  +  F+
Sbjct: 109 IKKKVKSALTYPIAIIVVAIVLVMVMMMYVLPAFGKVYADMGAELPPLTQIMMTASNFFV 168

Query: 173 LIGIMVMRLMINFDV 187
             G +V+  +I   V
Sbjct: 169 SYGWLVIIGLIAMTV 183


>gi|283852777|ref|ZP_06370041.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
 gi|283571858|gb|EFC19854.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
          Length = 408

 Score = 37.4 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 29  AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           +G+PV   + ++VG   +  +  EFRR+ +    G  L+  +SR   + P        T+
Sbjct: 285 SGVPVLTTIDILVGTIGNAAIAKEFRRIQDMIRTGQGLAGPLSRARYFTP-----MVVTM 339

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           ++V  + G NL E LA +S       +  A+V       + S  +   L   ++ +V F 
Sbjct: 340 VAVGEESG-NLDEMLAAISE------HYDAEVSY--SVKRLSDALGPILIVGLAGVVGFF 390

Query: 148 SPGYMNVLIN 157
           +      + +
Sbjct: 391 ALAIFLPMWD 400


>gi|85859841|ref|YP_462043.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
 gi|85722932|gb|ABC77875.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
          Length = 399

 Score = 37.4 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ +  ++ ++   +    +R     V+     G  ++ +  +   + P    
Sbjct: 70  VSTLLRSGMRIDRSLELLRNGAKKQAIRDVLTAVLNDVKAGGDVAAAFEKTGSFSP---- 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F  ++I V  +  GNL  A  N+++ L+ + + +A+++          ++I +      
Sbjct: 126 -FLVSMIQVN-EAAGNLQAAFENIAQYLKFQISFRAEIRNAMT---YPLFLICASILTFL 180

Query: 142 TLVYFTSPGYMNVL 155
            +  F  P + ++ 
Sbjct: 181 AIFQFVVPRFFSIF 194


>gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
 gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
          Length = 400

 Score = 37.4 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 29  AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P    +  ++   + P       +V      G  +  ++          E S     
Sbjct: 276 AGIPFLQGLESVMETLASPFWSQRLAQVHHDISAGKPVWVALKN------CGEFSPLCIQ 329

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAK---VQALSMEAKASAWIIGSLPFCVSTLV 144
           +    +  G+L   L NL+    ++   +A+             +  IIG+L   +   +
Sbjct: 330 LVRTGEASGSLDAMLRNLAHHHGEKTLSQAENLAALLEPALLVITGLIIGTLVVAMYLPI 389

Query: 145 Y 145
           +
Sbjct: 390 F 390


>gi|307595208|ref|YP_003901525.1| type II secretion system F domain-containing protein [Vulcanisaeta
           distributa DSM 14429]
 gi|307550409|gb|ADN50474.1| Type II secretion system F domain protein [Vulcanisaeta distributa
           DSM 14429]
          Length = 265

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH-LGLSL 65
           R++ F     N L I++  + +G+ + + ++ +     DP +  EFR ++      G+ +
Sbjct: 76  RSSHFERYLINTLMIMIPLIASGVTLEELISTLATIERDPYIAREFRLILRDAREGGMDI 135

Query: 66  SESISRMVRYMPLQE----VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             ++   +  +P +         +    + + L   L   L  L R   +R     +V  
Sbjct: 136 LTALRASISRVPSRTYGEIFGLIAETYLISANLADVLMLKLEYLVRNKYNRLRSATQVLG 195

Query: 122 LSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           L ME     A ++  L   +   +    P Y+  ++  P   +++       ++G  VM 
Sbjct: 196 LFMEIYLVVALLLPILLVLIVITLSPLGPIYLGPIVLSPTLALIITTLIYSPVMGY-VMY 254

Query: 181 LMIN 184
           ++I+
Sbjct: 255 ILID 258


>gi|257792955|ref|YP_003186354.1| hypothetical protein Aaci_2962 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479647|gb|ACV59965.1| hypothetical protein Aaci_2962 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 326

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 32  PVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTV 87
            +  A+   V      P+R    R+ +      +  ++   + R V+ +     +  ++ 
Sbjct: 164 SMLHALQSTVEHLPPSPIRRAVARLTDRLTDYTTPDDARRALHRFVKELGTSWAAQLASD 223

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-PFCVSTLVYF 146
           I      G N+  +LA L +  ++ ++ +       ++    + +   + P  +     F
Sbjct: 224 IEHALLDGVNVEASLALLHKEFQEIEDARKSQNLARIDTLLISCVPFLMWPVMMVLFYLF 283

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            S         +P G     +      +G  ++
Sbjct: 284 VSRNIFQYQFANPTGFTWFLLTL-LATLGSFII 315


>gi|320104346|ref|YP_004179937.1| type II secretion system F domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319751628|gb|ADV63388.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
           43644]
          Length = 415

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 13/119 (10%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLG 62
           L  K+   F        D       AGLP+  ++ ++  Q+    +++    V+E    G
Sbjct: 72  LSNKKLCLFTRQLSTLQD-------AGLPILRSLKILENQAKPGVLKNVLGDVVEDIESG 124

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +LSE++++  +         +  +I    + GG L   L  L+      ++++ +++ 
Sbjct: 125 STLSEAMAKHPKAFD----RLYCNMIK-AGEAGGALETILQRLADFKEKAQSLRRRIKG 178


>gi|227505649|ref|ZP_03935698.1| type II secretion system protein F [Corynebacterium striatum ATCC
           6940]
 gi|227197802|gb|EEI77850.1| type II secretion system protein F [Corynebacterium striatum ATCC
           6940]
          Length = 176

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L++    V AGL V DA+A +   S+ P   E         +G  +S +I+ +     L 
Sbjct: 45  LELFAVCVEAGLSVRDALAGVASTSACPAWQE---AAALLGVGAPMSSAIAVLREQPQLA 101

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRIL 109
           ++   + ++ +  + G  ++     L   L
Sbjct: 102 DL---AGLLELSGESGAAIAAGCHRLVETL 128


>gi|307545811|ref|YP_003898290.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
 gi|307217835|emb|CBV43105.1| general secretion pathway protein F [Halomonas elongata DSM 2581]
          Length = 400

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 13/115 (11%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLS 66
           R           +D       AG+P+  A+  +  Q+           ++     G SL+
Sbjct: 61  RLTLLTRQLATLID-------AGIPIGQALEALASQADREAARALLLSLVNRVREGYSLA 113

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           +S+                  +    +  G L + L  L+  L   +  + K + 
Sbjct: 114 DSLKAHP-----ASFDRLYVALVAAGERAGQLPQVLERLADHLERSQRQRQKAKG 163


>gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
 gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
          Length = 393

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L  +     +G+P+   +  ++  S+D  +    +R+      G SLSE+I+      P 
Sbjct: 62  LRELATLRESGMPLDQCINSLLENSADKQMVLVLKRLHSDIESGSSLSEAIAAQPDSFPY 121

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               + S+++ +  +  G L  AL ++S  +   + + ++V++          +  +  F
Sbjct: 122 ----YVSSMLRL-GEASGQLGNALFSISERIEREEKLVSEVKSALTYPAFLLVVCVATIF 176

Query: 139 CVSTLVY 145
            +   V 
Sbjct: 177 FMFLYVI 183


>gi|256810974|ref|YP_003128343.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
 gi|256794174|gb|ACV24843.1| Type II secretion system F domain protein [Methanocaldococcus
           fervens AG86]
          Length = 344

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 5/167 (2%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
           L  +V  +RAG  + + +  I   +    +  E R +I   ++ G +L E++ R      
Sbjct: 178 LLYMVSILRAGASLPEILETISKSNEYGFISFEARSIIRDVNVSGYTLVEALERAKLRTE 237

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRK-NMKAKVQALSMEAKASAWIIGS 135
           +  +      + +    G NLS  L  L   + RD    + +    +      +  +   
Sbjct: 238 IPLLKKLYDQMIIGYNKG-NLSMLLEKLYEDIVRDSLSKLDSSKFMIQNLGNLTFGVGLI 296

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           LPF    L    S      ++N     +        ++ GI V   +
Sbjct: 297 LPFAGMILSTMISNQGFPGILNTLDLLLTKIGPLLTLIFGIFVKLKI 343


>gi|167622409|ref|YP_001672703.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
 gi|167352431|gb|ABZ75044.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
          Length = 420

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+S+    +Y     V
Sbjct: 89  IATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYV 148

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L      ++      + +K+K++         A ++       +
Sbjct: 149 DLVA-----AGEHSGSLDAVFDRIATYREKSEALKSKIKK---AMFYPAAVVIVAIMVTA 200

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 201 LLLLFVVPQFEDIF 214


>gi|110798866|ref|YP_696526.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
           13124]
 gi|110673513|gb|ABG82500.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
           13124]
          Length = 339

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+P+  ++ +I     D    E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPISLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|158320668|ref|YP_001513175.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs]
 gi|158140867|gb|ABW19179.1| type II secretion system protein [Alkaliphilus oremlandii OhILAs]
          Length = 400

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G+P+  A+ V+     +  V  +     E    G+ LS++I  M  + P+ + 
Sbjct: 273 LSTLMDSGIPLLQAMDVVSRVVGNTVVLDKLTVASENVRKGIPLSKAIHDMKVFPPMVD- 331

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               ++I +  + G  L + L   +    +           +   + +  +   L   ++
Sbjct: 332 ----SMIKIGEESG-TLDDILNKTADFYDEEVE--------TALQRMTTLMEPILIVVMA 378

Query: 142 TLVYFTSPGYMNVLIN 157
            L+ F     +  L +
Sbjct: 379 LLIGFIVIAMVLPLFD 394


>gi|332669357|ref|YP_004452365.1| Type II secretion system F domain-containing protein [Cellulomonas
           fimi ATCC 484]
 gi|332338395|gb|AEE44978.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
           484]
          Length = 163

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 35/91 (38%)

Query: 93  QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYM 152
           +LG  L++ L  ++R +   +  + +V A     +A+  ++  LP     L        +
Sbjct: 60  ELGAPLADVLEQVARAVAADEEHETEVAAALAGPRATTRVLTLLPVAGVLLGMLLGANPV 119

Query: 153 NVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
            V+++   G     +    +L G      + 
Sbjct: 120 GVVLDGGLGTASAALGVVLLLGGRAWTGRLT 150


>gi|325956434|ref|YP_004291846.1| Competence protein [Lactobacillus acidophilus 30SC]
 gi|325332999|gb|ADZ06907.1| Competence protein [Lactobacillus acidophilus 30SC]
          Length = 333

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 26/179 (14%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD--PVRSEF-RRVIETQHLGLSLSESI 69
            +     LD +  S+  G  + +++ +         P R E   ++      G + S  +
Sbjct: 15  EEQLA-FLDYLKHSLDNGFSLINSIEL----MPALWPKRKELMGKLAMRMKEGANFSSEL 69

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQ---LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++           FS     Q       GNL+E L  L+ + R ++    K++    E 
Sbjct: 70  VKLG----------FSKTTVTQVNLALQQGNLTECLNQLATLNRLKQEQVKKLR---SEL 116

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
                +   +   +  +  F S  + +   ++  G +++ V     L+GI  +  ++  
Sbjct: 117 SYPFVLAIMMVVLLVFMQSFISTQFSD--TSEHSGDLVMLVLIGLALVGIYFLAKIVTL 173


>gi|262374059|ref|ZP_06067336.1| general secretion pathway protein F [Acinetobacter junii SH205]
 gi|262311070|gb|EEY92157.1| general secretion pathway protein F [Acinetobacter junii SH205]
          Length = 401

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+ +A+  +  QS    V++    V      G SL++++ +  R     E+
Sbjct: 73  LSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQAMQQSGR---FPEL 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140
              +       +  G+L   L  LS    +R  M+ K+Q     A     I+  + F + 
Sbjct: 130 YIATVA---AGERSGHLDLILDQLSDYTENRFAMQKKIQG----AMIYPIILMLMSFGIV 182

Query: 141 STLVYFTSPGYMNVL 155
             L+ +  P  +   
Sbjct: 183 MGLMTYVVPEIVKTF 197


>gi|168215471|ref|ZP_02641096.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
           8239]
 gi|182382167|gb|EDT79646.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
           8239]
          Length = 339

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+P+  ++ +I     D    E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPVSLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|187476846|ref|YP_784870.1| general secretion pathway protein F [Bordetella avium 197N]
 gi|115421432|emb|CAJ47937.1| general secretion pathway protein F [Bordetella avium 197N]
          Length = 397

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + A LP+  A+ + + Q+    + +    V +    G  LS +++   R     E+
Sbjct: 67  LASLLAASLPLDAALTITLEQAEKRHIATTLTGVRDDVRAGHKLSSALASRPR--DFPEI 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+LS+ +  L+  + +R  +++KV    +       +   +   + 
Sbjct: 125 Y---RALIGAGEESGDLSQVMEKLAHYIEERNALRSKVLTAFIYPVVVGAVSVLIVIFLL 181

Query: 142 TLV 144
             V
Sbjct: 182 GYV 184


>gi|330721234|gb|EGG99334.1| General secretion pathway protein F [gamma proteobacterium
           IMCC2047]
          Length = 405

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+A LP+ +A++ +  Q++ P VRS    V      G +L+ ++    R  P  E+
Sbjct: 75  LATLVQASLPLEEALSAVAQQTTKPKVRSMVLAVRSKVLEGHTLANALGEFPRAFP--EI 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G L + L  L+         + K+    +       +   +   + 
Sbjct: 133 YRATVA---AGEKSGFLDQILNRLADYTESSHESRQKIMMALLYPVILLLLSIIIVVGLM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +    P  + V I+   G  L  +    M     +
Sbjct: 190 VYIV---PDVVEVFIDT--GQQLPALTVGLMAFSDFI 221


>gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 409

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 11/123 (8%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP----------VRSE 51
           +  ++KR  + L D+P+ +  ++  + AGL V  +   IV                   E
Sbjct: 248 RQKLEKRKRELLKDYPDIVSKLIVFIGAGLSVRQSWEGIVKDYESENKEKRYAKRYAYEE 307

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILR 110
             + +     G   +       R   L++    ++++    + G + LS  L   ++   
Sbjct: 308 MSKSLARLKTGTQENIVYKDFGRSCLLRQYMKLASLLEQNRKSGISGLSTLLNMEAQSAW 367

Query: 111 DRK 113
           + +
Sbjct: 368 EER 370


>gi|291333682|gb|ADD93371.1| general secretion pathway protein F [uncultured marine bacterium
           MedDCM-OCT-S01-C143]
          Length = 410

 Score = 37.4 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           +   A   +   V AG+P+  ++  +V Q   P  ++ +  V    + G+ + ++++   
Sbjct: 72  ELAVATRQLATLVGAGIPLVQSLTALVDQIEAPRFKAVWADVKTRVNEGVGMGDAMAAYP 131

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           RY      S     +    +  G L   L  L+     + +++ K+
Sbjct: 132 RY-----FSNLYVSMVRAGESSGALEIVLERLADFTESQADLRGKL 172


>gi|289548811|ref|YP_003473799.1| type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
 gi|289182428|gb|ADC89672.1| Type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
          Length = 407

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   V+AG+P+ +A+ VI  Q  D  +    + V      G+S+S ++ +     P
Sbjct: 72  FCRQLGTMVQAGVPLVEALNVIAEQMPDRRLSEASQEVARMISEGMSVSAAMRKFPHVFP 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     + +  +  G +  AL   S        +K K+++ S       +++    
Sbjct: 132 E-----LVVNLMLVGEETGKIDVALLKASEYYEKMATIKGKIKSASF---YPTFVVIVAV 183

Query: 138 FCVSTLVYFTSPGY 151
             VS ++YF  P +
Sbjct: 184 TIVSGILYFLVPTF 197


>gi|297570198|ref|YP_003691542.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926113|gb|ADH86923.1| general secretion pathway protein F [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 404

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   VR+G+ + +A+  +  Q+  P ++S    V      G +   ++    R  P  E+
Sbjct: 74  LATLVRSGIVLEEALGAVAEQAEKPRLKSVLMAVRSRILEGYAADRALGEFPRVFP--EL 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
              +       +  G+L   L  L+     R+ ++ KV
Sbjct: 132 YRATLA---AGEQAGHLDVVLERLADYTEARQQLQQKV 166


>gi|91786744|ref|YP_547696.1| type II secretion system protein [Polaromonas sp. JS666]
 gi|91695969|gb|ABE42798.1| type II secretion system protein [Polaromonas sp. JS666]
          Length = 405

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   +    V      V      G SLS +  +     PL   
Sbjct: 75  LATMMKAGVPLLQSFDIVGRGNPNGSVTKLLNDVRTDVETGTSLSAAFRK----YPLY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +     +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   + 
Sbjct: 130 NALYCNLVEAGEAAGILESLLDRLAVYMEKTEAIKSKIKSALMYPISVVVVAFVVVAVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +A +   +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVIAVSEFFVAYWWL 227


>gi|156937800|ref|YP_001435596.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
 gi|156566784|gb|ABU82189.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
          Length = 326

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 13/168 (7%)

Query: 29  AGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
           +G   S+A+  +  +S        +    +RV     LG  + E +  +    P ++ S 
Sbjct: 153 SGTTYSEALRKLYEKSESLGAEPELGEVVKRVFI---LGEDIVEVLKEVAEMTPHRDFSN 209

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW-----IIGSLPF 138
           F   ++   + G  L                 K K    ++E  +  +     ++  L  
Sbjct: 210 FLRGLANVIESGTGLENFADVGFETSMASMEAKMKEVMGALEIMSEMYVTGAAVMPILGL 269

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
             + ++    P   +  ++ P    LL    AF+ I ++ +  ++  D
Sbjct: 270 SFAVVLSTMGPAAQSFGLSLPVPPGLLAGLMAFLAIPLLSIFAILMVD 317


>gi|90020509|ref|YP_526336.1| type IV pilus biogenesis protein PilC [Saccharophagus degradans
           2-40]
 gi|89950109|gb|ABD80124.1| type II secretion system protein [Saccharophagus degradans 2-40]
          Length = 405

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   S +  +    R++ +    G   + S+ +  +Y      
Sbjct: 75  MATMMKAGVPLVQSFEIVSNGSENKSLAELIRQIKDDVASGSGFAPSLRKHPKYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L   L  ++      + +KAK++           ++        
Sbjct: 131 ELFCNLVE-SGEQSGALETMLDRIATYKEKTEQLKAKIKKALT---YPIAVLVVAGIVSM 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P +         G  L   A   M++G+
Sbjct: 187 ILLIKVVPQFAASF--SSFGAEL--PAFTMMVLGM 217


>gi|288572882|ref|ZP_06391239.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568623|gb|EFC90180.1| type II secretion system protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 383

 Score = 37.4 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +R+G+P+  A+ +      DP +  +  + +    GL   +++ +       +++ 
Sbjct: 259 LGSLLRSGIPLVQALRMSA--VLDPRKDRWMAIADQVKGGLRFEKALEK--DGTFDEDLV 314

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +F  +     ++GG+L+ AL  +++   DR   
Sbjct: 315 YFVRI----GEIGGDLAGALEQIAQTRWDRARA 343


>gi|294666986|ref|ZP_06732215.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603275|gb|EFF46697.1| pilC, fimbrial assembly protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 418

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A+ +I     +P ++    ++      G SL E+IS      P+Q  
Sbjct: 88  MATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAIS----RHPVQ-F 142

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++    + + +K K++         A ++        
Sbjct: 143 DDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALF---YPAMVMAVAIIVSG 199

Query: 142 TLVYFTSPGYMNVL----INDPRGHMLLGVAAAFMLIGIMVM 179
            L+ F  P + +V        P    ++  A+ FM+     M
Sbjct: 200 ILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWFM 241


>gi|242081993|ref|XP_002445765.1| hypothetical protein SORBIDRAFT_07g025400 [Sorghum bicolor]
 gi|241942115|gb|EES15260.1| hypothetical protein SORBIDRAFT_07g025400 [Sorghum bicolor]
          Length = 872

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQL-GGNLSEALANLSRILRDRKN-----MKA 117
           ++ ++   +    P  +V   ++VI    QL GG+ + AL+++++ +R         ++ 
Sbjct: 164 TVDDA--NVNPRYPSPDV--LASVIERAQQLLGGSAASALSHIAQRIRQDGETADASLRR 219

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           ++Q  S++   S   +G++ F +   +   
Sbjct: 220 EIQTESVQLGISMQHLGAMFFELGRTMMML 249


>gi|196048208|ref|ZP_03115385.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196020945|gb|EDX59675.1| conserved hypothetical protein [Bacillus cereus 03BB108]
          Length = 288

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IK+       + P  L  +++ ++      +AV      +   +R     +     
Sbjct: 131 LKRKIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 190 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|170724682|ref|YP_001758708.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
 gi|169810029|gb|ACA84613.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
          Length = 420

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   ++AG+P+   + ++        +R     ++     G+ LS+++         Q  
Sbjct: 89  IATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTILTEIQSGIPLSDAL-----RPHRQYF 143

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L      ++      + +K+K++        +A +I ++     
Sbjct: 144 DDLYVDLVAAGEHSGSLDAVFERIALYKEKAEALKSKIK--KAMFYPAAVVIVAIGVTTL 201

Query: 142 TLVYFTSPGYMNVL 155
            L++   P +  + 
Sbjct: 202 LLLFVV-PQFQEIF 214


>gi|113475417|ref|YP_721478.1| type II secretion system protein [Trichodesmium erythraeum IMS101]
 gi|110166465|gb|ABG51005.1| type II secretion system protein [Trichodesmium erythraeum IMS101]
          Length = 377

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 29  AGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P+   + V+  Q+S+  ++   +++      G  LSE++              F ++
Sbjct: 50  AGVPMIRCLRVLKDQTSNAKIKYALKQISGEVEKGNELSEAMKEHPACFD----ELFISM 105

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           ++   ++GG L E L  L+ +L       +++ +     K   +I  ++ F ++T +  T
Sbjct: 106 VA-AGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTFLLPT 164

Query: 148 SPGYMN 153
             G   
Sbjct: 165 FAGIFE 170


>gi|298527741|ref|ZP_07015145.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511393|gb|EFI35295.1| Type II secretion system F domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 419

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           + +   ++AG+ ++ ++A++   + +  +    + V      G  L +++       P  
Sbjct: 87  EHLGAMLKAGITMNKSLALLGDLTENRSLARVIKDVHSRIREGSHLYQALEEHPEVFP-- 144

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
               F  ++    + GG L   L  LS  + +   ++  + +  +          +    
Sbjct: 145 --EVFINMVR-AGESGGILDVILERLSEFMNEMARLREHLVSSMIYPAILGLTAAASMLV 201

Query: 140 VSTLVYFTSPGYMNVL 155
           +  +V          +
Sbjct: 202 MLVVVIPRFADIFVDM 217


>gi|149177768|ref|ZP_01856368.1| General secretion pathway protein F [Planctomyces maris DSM 8797]
 gi|148843418|gb|EDL57781.1| General secretion pathway protein F [Planctomyces maris DSM 8797]
          Length = 362

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 24/182 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           I+  V+AG+P+   +  +  +  D +      +      G +L E+++          V 
Sbjct: 29  IISLVQAGIPLELGLREMGNELPDRLGRITADLATRMERGSTLPEAMA--AEGACFPRVY 86

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCVS 141
                  +     G L+ AL  +S    +  +++ ++  A+       +   G     + 
Sbjct: 87  RVIVEAGI---KSGKLTVALEEMSNYAWELFHLRRQIGMAMVYPLIVFSLAYGLFMIFLF 143

Query: 142 TLVYFTSPGY-------------MNVLINDPRGHMLLGVAAAFMLIGIMVMR----LMIN 184
            ++   +  Y             +N + +      ++       L  I+ MR     ++N
Sbjct: 144 EVLSRFNAAYDIFRLSESKPLQLLNSMQSTVVYWGMVPP-LVLFLFAILWMRTGSSQLLN 202

Query: 185 FD 186
           F 
Sbjct: 203 FK 204


>gi|239827897|ref|YP_002950521.1| type II secretion system protein [Geobacillus sp. WCH70]
 gi|239808190|gb|ACS25255.1| type II secretion system protein [Geobacillus sp. WCH70]
          Length = 403

 Score = 37.0 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           L DF   L      ++AG+ + D+  ++  Q+    +++    V E+   G  LS + ++
Sbjct: 62  LQDFVIYLRQFATLIKAGVSIVDSTRILASQTESKALKNALMEVEESLRAGNPLSAAAAK 121

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
             R  P    + F  ++    + GGN+ E L  L+         K K+ +   
Sbjct: 122 HPRIFP----AMFVNMVK-AGEAGGNMDETLERLADHFEKIHRTKQKIVSALA 169


>gi|254517637|ref|ZP_05129693.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
 gi|226911386|gb|EEH96587.1| type II secretion system protein [Clostridium sp. 7_2_43FAA]
          Length = 400

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+ ++  + ++  +  +  +R     + +    G  LSES+++  +Y P        
Sbjct: 75  LDAGVTITTCLNILSNEIPNKKLRELLSIIEDDVKKGELLSESMAKHKKYFP----QLLI 130

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           +++    ++ GN+ E +  +S        +  KV+         + +       V  ++ 
Sbjct: 131 SMVE-SGEVSGNIDEMMLRMSVHFEKENKINNKVK---SAMTYPSILSIVAVIAVVFIMT 186

Query: 146 FTSPGYMNVLINDPRGHMLLG 166
           F  P ++ +   +     L+ 
Sbjct: 187 FVMPTFIEMFEGEGIDLPLIT 207


>gi|168210794|ref|ZP_02636419.1| putative pilus biogenesis protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711113|gb|EDT23295.1| putative pilus biogenesis protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 339

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V++G+P+  ++ +I     D    E  +R+ +    G +LS++        P        
Sbjct: 19  VKSGMPIGRSLDLIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYP----DLMK 74

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            ++ +  + G NL E L   +R +   K +K K+       +    ++  L   +   V 
Sbjct: 75  DMMKIGEESG-NLEEVLEKCARNILAEKEIKNKIIK---SLRYPISLLIGLIIMIFGYVT 130

Query: 146 FTSPGYMNVL 155
           +  P ++++ 
Sbjct: 131 YILPQFVDMY 140


>gi|120555558|ref|YP_959909.1| type II secretion system protein [Marinobacter aquaeolei VT8]
 gi|120325407|gb|ABM19722.1| type II secretion system protein [Marinobacter aquaeolei VT8]
          Length = 398

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 28  RAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           R+G+ + DA+  +  G+ +  ++S F R       G S S+++      +P+ E  F   
Sbjct: 74  RSGVSLKDAIDSLTGGERAAAMQSVFDRWSSGLRQGESFSDALR--ASGVPVPEYLF--- 128

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYF 146
            +    +L G + ++L      +   K +  +++   +     A +  S    V  +  F
Sbjct: 129 QLVKAGELTGEMGDSLQTAVSQMEYEKQIATEMKNALV---YPAILCFSGVGAVLLVFTF 185

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             P + N+L     G  L  +A A +  G  V
Sbjct: 186 VVPQFQNLL---EHGDKLPWLAWAVLATGKWV 214


>gi|192359121|ref|YP_001983190.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus
           Ueda107]
 gi|190685286|gb|ACE82964.1| type IV pilus biogenesis protein PilC [Cellvibrio japonicus
           Ueda107]
          Length = 428

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++     +P ++S    + +    G   + S+ +  RY      
Sbjct: 98  MATMMKAGVPLVQAFDIVADGLENPNMKSLVLEIRDDVAAGGGFAASLRKHPRYFD---- 153

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F  ++    +  G L   L  ++      + +KAK++ 
Sbjct: 154 DLFCNLVD-AGEQSGALETMLDRIATYKEKTEALKAKIKK 192


>gi|117618056|ref|YP_858309.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559463|gb|ABK36411.1| type 4 fimbrial assembly protein PilC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 413

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  ++ +I        +R    ++      G  +SE++ R  R+      
Sbjct: 82  ITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRH-----F 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++           +I       S
Sbjct: 137 DDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPTMVILVAIVVTS 193

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 194 ILLLFVIPQFEDIF 207


>gi|6176560|gb|AAF05620.1|AF190908_1 XpsF [Xanthomonas oryzae pv. oryzae]
          Length = 156

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     V +T
Sbjct: 40  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDT 97

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + ++ K
Sbjct: 98  VRGGAPLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGK 152

Query: 119 V 119
           V
Sbjct: 153 V 153


>gi|330444857|ref|ZP_08308512.1| general secretion pathway protein F [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489167|dbj|GAA03009.1| general secretion pathway protein F [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 408

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+A +P+ + +  +  Q+  P +++    V      G +L++S++           
Sbjct: 77  LATLVQASMPLEECLKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEFPHI-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K+Q   +       +  S+   V+
Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P  ++  +    G  L  +    +     V
Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|90417995|ref|ZP_01225907.1| possible general secretory pathway protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337667|gb|EAS51318.1| possible general secretory pathway protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 404

 Score = 37.0 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+ +  A+ +I   ++ P +    R + +   +G SL+E+        P   V
Sbjct: 76  LSALLTAGVALDRAILIISQTATKPVIAVLLRDLHQAISMGQSLAEATGNHPTAFPANYV 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                      +  G L E LA L+R  +  + ++ ++ +   
Sbjct: 136 KIVQVA-----EAAGTLPETLAVLARERQRSEELRRRISSALA 173


>gi|198283215|ref|YP_002219536.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665636|ref|YP_002425446.1| type IV pilus biogenesis protein PilC [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247736|gb|ACH83329.1| type II secretion system protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517849|gb|ACK78435.1| type IV pilus biogenesis protein PilC [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 419

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
                  +  +   + AG+P+  +  ++V  +S   ++   + +++    G SLS++++ 
Sbjct: 75  EAQLVVMVRQLSTMINAGVPIVQSFELLVSATSGAGMKKLLKGILKHLKEGESLSQAMAH 134

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +Y        F + +    + GG L   L  L+        +  KV++
Sbjct: 135 FPKYFD----RLFVS-LVAAGEQGGILDTILLRLAEYREKTLALNKKVKS 179


>gi|160902099|ref|YP_001567680.1| type II secretion system protein [Petrotoga mobilis SJ95]
 gi|160359743|gb|ABX31357.1| type II secretion system protein [Petrotoga mobilis SJ95]
          Length = 382

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 16/142 (11%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVR 74
                  +   +++GL + +A+ +++  ++   + S F         G  L+E  S+   
Sbjct: 244 LHEFTRNVNLLLKSGLTIYNALEIVLSNTNSQYISSTFLTAYLDIEKGKDLTEVFSK--- 300

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
              +++V  FS  +SV  + G N  E    L                 +   K    I  
Sbjct: 301 ---IKDVKEFSLTMSVSKRKG-NYKEVFDFLENYYYSSFK--------TASDKIMKMIEP 348

Query: 135 SLPFCVSTLVYFTSPGYMNVLI 156
            L   +S ++   +    + + 
Sbjct: 349 VLIIFLSVIILSLAFEIYSNVY 370


>gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 403

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGL 63
           ++ R    + D           + AG+P+  A+ VI  Q            + +    G 
Sbjct: 54  VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRYFGKVLEDIHKKVQSGS 113

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            LS +++      P         +I    ++ G++ +AL  ++        ++ K+    
Sbjct: 114 MLSRALAEKAECFP----PILINMIE-AGEMSGSVDQALDRMATHFEKELKLRQKIINAL 168

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +     A +I      +  ++ F  P ++ + 
Sbjct: 169 I---YPAIVILVAIGVLIIMLTFVVPTFVGIF 197


>gi|111225902|ref|YP_716696.1| hypothetical protein FRAAL6567 [Frankia alni ACN14a]
 gi|111153434|emb|CAJ65190.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 432

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD--------PVRSEFRRVIETQHLGLSLSESI 69
           + L      + AG P   A+        D        P      R+ +T       + ++
Sbjct: 62  DFLAAFAAELDAGGPHGHALRAAARGIDDLGAAPGQHPDWIPLDRLADTLAGPEDPAVAL 121

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
                      V        V + +G  L+ A   L+ + R       ++ A     ++S
Sbjct: 122 C----RNEAGGVRQLGIAYQVCTMVGARLAPATTMLATLARADAVRAGELAAALAGPRSS 177

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
             ++ +LP     L        ++ L+  P G+  L       L G+  +R
Sbjct: 178 GRLVAALPLAGIALGSLAGAQPLHTLLATPAGNACLLAGGLADLAGLRWLR 228


>gi|255322157|ref|ZP_05363303.1| type II secretion system protein [Campylobacter showae RM3277]
 gi|255300530|gb|EET79801.1| type II secretion system protein [Campylobacter showae RM3277]
          Length = 415

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           I    VRAG+P++DA+        +  +  +   +      G+SL+E+     +      
Sbjct: 285 IFTELVRAGIPIADALETATLTVENQDIHDKLATIKIAVQRGVSLTEAFRD-TQLYESML 343

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +   S       + GG +   L  ++           K +   +    S+++   +   +
Sbjct: 344 IQMLS-----AGEKGGAIDTMLEKVTDYY--------KAKFSDLVDNISSYVEPIMLLFM 390

Query: 141 STLVYFTSPGYMNVLIN 157
           + +V   + G    + +
Sbjct: 391 AGMVILLALGIFMPMWD 407


>gi|157146466|ref|YP_001453785.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895]
 gi|157083671|gb|ABV13349.1| hypothetical protein CKO_02226 [Citrobacter koseri ATCC BAA-895]
          Length = 402

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 8/159 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+  A+  I  Q+ D  +      + +    G +L ++ S+  R       
Sbjct: 72  LSTLVNAALPLESALKAISKQTEDKKLAVMVGEIRDKVVEGHTLFDAFSQFPR-----TF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 + +  +  G+L   L  L+     R+ MK+K+ QA+      +   I  +   +
Sbjct: 127 DKLYCTLVMAGEKTGHLGGVLEKLAEYNEQRQKMKSKLSQAMVYPITLTVVAIAVISILL 186

Query: 141 STLVYFTSPGYMNVLINDPR-GHMLLGVAAAFMLIGIMV 178
             +V      ++++    P     L+ V+      G+++
Sbjct: 187 VAVVPQVIEQFVHMKQQLPVTTRTLIAVSDFLQAYGMVI 225


>gi|120597346|ref|YP_961920.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|146294509|ref|YP_001184933.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|120557439|gb|ABM23366.1| type II secretion system protein [Shewanella sp. W3-18-1]
 gi|145566199|gb|ABP77134.1| type II secretion system protein [Shewanella putrefaciens CN-32]
 gi|319427874|gb|ADV55948.1| type IV pilus inner membrane protein, PilC [Shewanella putrefaciens
           200]
          Length = 421

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   I   + AG+P+   + ++        +R     ++     G+ LS+++    RY  
Sbjct: 86  ATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFD 145

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              V   +       +  G+L      ++      + +K+K++ 
Sbjct: 146 DLYVDLVA-----AGEHSGSLDAVFDRIATYREKAEQLKSKIKK 184


>gi|291615062|ref|YP_003525219.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585174|gb|ADE12832.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 413

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 10/157 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A+A +   S +PV  +  + + E+   G  LS ++ R  +       
Sbjct: 81  MYTLLKAGVPIMRALAGLQESSRNPVFSAMLQDLRESLDSGRELSTALRRHPKI-----F 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S F   +    ++ G L      L   L   K+MK +++      +   +++ ++   + 
Sbjct: 136 SPFYLSMVQVGEMTGMLDVTFLRLYEHLEFEKDMKERIK---SAVRYPMFVLVAMAVAIV 192

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +  F  P     +       + L         G MV
Sbjct: 193 IVNIFVIPA-FAKVFEGFHAQLPLMTRILMGFSGFMV 228


>gi|288818478|ref|YP_003432826.1| general secretion pathway protein F/pilus assembly protein
           [Hydrogenobacter thermophilus TK-6]
 gi|288787878|dbj|BAI69625.1| general secretion pathway protein F/pilus assembly protein
           [Hydrogenobacter thermophilus TK-6]
 gi|308752068|gb|ADO45551.1| Type II secretion system F domain protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 388

 Score = 37.0 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++  KFL+ F + L  +   +++GL V  A+  I  +       +  +V E    G +LS
Sbjct: 49  RKDTKFLERFTSNLLQL---LKSGLTVDKALLFIAERERK-YHQKLLKVYEEIRSGSTLS 104

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            ++ R+    P     F+  +I    + G +L E L+ +   +++   +K+ +    +  
Sbjct: 105 MAL-RLSNLFP----DFYVQMIRSAEESG-SLEETLSLILDFIKEENELKSSIITAML-- 156

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
              +++ G   F +  +  +  P +  V  +      LL  A  F+ 
Sbjct: 157 -YPSFVFGVSLFSLLIISSYVVPKFRLVFQSTDVKLPLLTRAMFFLT 202


>gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32]
 gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 238

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 9/142 (6%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
               LD++   +RAGLPV  A+  + G +     +          LG    E+ + +   
Sbjct: 97  LAGTLDLLAACLRAGLPVPSALEAVAGSAPAAASTALSSTAGLLALGSPPHEAWAPVQAA 156

Query: 76  MPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
             L E++  +  I          + A     R  RD    +A+ +A        A +  +
Sbjct: 157 PGLGELA--AAAIRTSRSGAAFAAAAGDLAGRF-RDELATEAEERAER------AGVALA 207

Query: 136 LPFCVSTLVYFTSPGYMNVLIN 157
           LP  +  L  F   G + V++ 
Sbjct: 208 LPVGLCFLPAFFCLGVLPVVLG 229


>gi|314957235|gb|EFT01339.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
          Length = 228

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 92  FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 151

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 152 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 210

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 211 SVMLILL 217


>gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4]
 gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 299

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLGLSLS 66
           +F     + +D++    R G+  + ++              F R+ E        G +  
Sbjct: 156 EFAQALSSYIDLVALCRRGGIGTTQSLERAAQVGD---SWVFLRLDEELYEAGRSGEAPW 212

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
            +++R+   + L E+   + ++++    G ++  +L   +  LR  +    +  A     
Sbjct: 213 NALTRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATE 272

Query: 127 KASAWIIGSLPFCVSTLVY 145
           K +  + G     +  L+ 
Sbjct: 273 KLAMPLAGLAGLFIMLLLI 291


>gi|295706584|ref|YP_003599659.1| ComG operon protein [Bacillus megaterium DSM 319]
 gi|294804243|gb|ADF41309.1| ComG operon protein [Bacillus megaterium DSM 319]
          Length = 348

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  + + +  G  +S A++ +  Q S+  +++  + +E    G SL ++  ++  +  + 
Sbjct: 20  LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKLQFHRDIL 79

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              +F+       +  GNL  AL   S ++ ++   + K Q L
Sbjct: 80  SYLYFA-------EQHGNLQFALKESSSMIEEKVRHRKKFQKL 115


>gi|323964799|gb|EGB60266.1| type II secretion system protein F [Escherichia coli M863]
 gi|327255083|gb|EGE66686.1| bacterial type II secretion system protein F domain protein
           [Escherichia coli STEC_7v]
          Length = 400

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160
              V  +++F  P +  +    N P 
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199


>gi|315081087|gb|EFT53063.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
          Length = 297

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|300919660|ref|ZP_07136151.1| type II secretion system F domain protein [Escherichia coli MS
           115-1]
 gi|300413300|gb|EFJ96610.1| type II secretion system F domain protein [Escherichia coli MS
           115-1]
          Length = 400

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                    +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKL 233

Query: 178 VMRL 181
           +MR 
Sbjct: 234 LMRR 237


>gi|295133064|ref|YP_003583740.1| aminopeptidase [Zunongwangia profunda SM-A87]
 gi|294981079|gb|ADF51544.1| secreted aminopeptidase [Zunongwangia profunda SM-A87]
          Length = 705

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 18  NALDIIVRSVRAGLPVS-DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
            ALD+  ++   G      A+A  + +   P++SEF  ++      L+   ++  +    
Sbjct: 512 EALDLYKKAFETGNIFVRQAIASSMKEIPQPLKSEFEDLLNDDSY-LTKEYALMTLWTNF 570

Query: 77  PLQEVSFFSTVISVQ 91
           P+    + S   ++Q
Sbjct: 571 PMDRAKYLSKTRNIQ 585


>gi|294501237|ref|YP_003564937.1| ComG operon protein [Bacillus megaterium QM B1551]
 gi|294351174|gb|ADE71503.1| ComG operon protein [Bacillus megaterium QM B1551]
          Length = 348

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L  + + +  G  +S A++ +  Q S+  +++  + +E    G SL ++  ++  +  + 
Sbjct: 20  LKQVSKLLEKGYTLSQALSFLTFQVSNKEKTDIEKCLEQLKRGESLHDAFVKLQFHRDIL 79

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
              +F+       +  GNL  AL   S ++ ++   + K Q L
Sbjct: 80  SYLYFA-------EQHGNLQFALKESSSMIEEKVRHRKKFQKL 115


>gi|291455824|ref|ZP_06595214.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM
          20213]
 gi|291382752|gb|EFE90270.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM
          20213]
          Length = 200

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 19 ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
           L ++  S+R G  V  A+ V+             RV E+   G+S S++
Sbjct: 34 VLRMVQVSLRQGASVPRALDVVGRAVGGAYGQCLSRVGESLLRGVSWSDA 83


>gi|254483146|ref|ZP_05096380.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
 gi|214036668|gb|EEB77341.1| Bacterial type II secretion system protein F domain [marine gamma
           proteobacterium HTCC2148]
          Length = 401

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  A+ V++       ++     +++    G +LS ++    +       
Sbjct: 71  LAVLLRAGLPLDRALKVLIDMAVQPQMQFLLNDLLKAVKGGKALSIAMQSHEKIFGS--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G LSE L  L   L   +N KA   ++       A ++      + 
Sbjct: 128 --FYISMVRSGEASGQLSEVLDRLVEYL---ENAKANRDSVVSALIYPAILLVVAVLSIV 182

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  P     L  D
Sbjct: 183 LMLGFVVPQ-FESLFED 198


>gi|212637455|ref|YP_002313980.1| type IV pilus biogenesis protein PilC [Shewanella piezotolerans
           WP3]
 gi|212558939|gb|ACJ31393.1| Type IV pilus biogenesis protein PilC [Shewanella piezotolerans
           WP3]
          Length = 421

 Score = 37.0 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+   + ++      P +R     ++     G+ LSE++      +   E+
Sbjct: 88  VATMLAAGVPIVTTLELLGKGHEKPKMRELLATIVNDVQSGIPLSEALR--PHRLYFDEL 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G+L      ++      + +K+K++ 
Sbjct: 146 Y---VDLVAAGEHSGSLDAVFDRIATYREKSEALKSKIKK 182


>gi|291526749|emb|CBK92335.1| Bacterial type II secretion system protein F domain [Eubacterium
           rectale M104/1]
          Length = 142

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 11/117 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD----------PVRSEFRRVIETQHLGLSLSESISRM 72
           +   + +G+ V  A   I  +  D          P   E          G++  ++ +  
Sbjct: 1   MAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVTEREISDGVTGRKAYAGF 60

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAKA 128
              + L        +I      G   + E L   S    D + + A         K 
Sbjct: 61  AERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERRLLALKLGEEAGTKM 117


>gi|217975015|ref|YP_002359766.1| type II secretion system protein [Shewanella baltica OS223]
 gi|217500150|gb|ACK48343.1| type II secretion system protein [Shewanella baltica OS223]
          Length = 423

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+   + ++        +R     ++     G+ LS+++    RY     V
Sbjct: 91  VATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYV 150

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +       +  G+L      ++      + +K+K++         A ++       S
Sbjct: 151 DLVA-----AGEHSGSLDLVFDRVATYREKSEALKSKIKK---AMFYPAAVVIVAILVTS 202

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P +  + 
Sbjct: 203 LLLLFVVPQFEEIF 216


>gi|15605299|ref|NP_220085.1| general secretion pathway protein F [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329011|gb|AAC68172.1| Gen. Secretion Protein F [Chlamydia trachomatis D/UW-3/CX]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPVILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 179 IGVIPTLKETFEDM 192


>gi|166154785|ref|YP_001654903.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu]
 gi|166155660|ref|YP_001653915.1| general secretion pathway protein F [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336060|ref|ZP_07224304.1| general secretion pathway protein F [Chlamydia trachomatis L2tet1]
 gi|165930773|emb|CAP04270.1| general secretion pathway protein F [Chlamydia trachomatis 434/Bu]
 gi|165931648|emb|CAP07224.1| general secretion pathway protein F [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LALLLRSGISLYDALTSLRDQYQGHALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 179 IGVIPTLKETFEDM 192


>gi|76789307|ref|YP_328393.1| general secretion pathway protein F [Chlamydia trachomatis
           A/HAR-13]
 gi|237804921|ref|YP_002889075.1| general secretion pathway protein F [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311389|ref|ZP_05353959.1| general secretion pathway protein F [Chlamydia trachomatis 6276]
 gi|255317690|ref|ZP_05358936.1| general secretion pathway protein F [Chlamydia trachomatis 6276s]
 gi|255348951|ref|ZP_05380958.1| general secretion pathway protein F [Chlamydia trachomatis 70]
 gi|255503490|ref|ZP_05381880.1| general secretion pathway protein F [Chlamydia trachomatis 70s]
 gi|76167837|gb|AAX50845.1| general secretion pathway protein F [Chlamydia trachomatis
           A/HAR-13]
 gi|231273221|emb|CAX10134.1| general secretion pathway protein F [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|296437032|gb|ADH19202.1| general secretion pathway protein F [Chlamydia trachomatis G/11222]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 179 IGVIPTLKETFEDM 192


>gi|21230136|ref|NP_636053.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769873|ref|YP_244635.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|83303434|sp|P31744|GSPF_XANCP RecName: Full=General secretion pathway protein F
 gi|21111668|gb|AAM39977.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575205|gb|AAY50615.1| general secretion pathway protein F [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 405

 Score = 36.6 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     + +T
Sbjct: 54  LRMLL--RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSRRVIADIRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + +K K
Sbjct: 112 VRGGAPLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus
           DSM 2162]
          Length = 580

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 10/179 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLG 62
           R +    +FP     +   V +GL    A   I+  S+       +   F  +     LG
Sbjct: 98  RASSIDGEFPFLSSYLSTMVMSGLSPYIAFERILKGSTIFKRTSELAQRFILLNR--ILG 155

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                +   + +  P   V    +      + GG++ + L   SR+L +   +  K+ A 
Sbjct: 156 RDPLTAFDELAKRTPSSRVKETLSGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIAD 215

Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGY--MNVLINDPRGHMLLGVAAAFMLIGIMV 178
            +     A++ +  L     T++YF + G+  +        G          +L G+++
Sbjct: 216 RLGGLLEAYLAMILLTMISFTVLYFVTTGFAGVVPFGLSSEGMFFFLYIVMPLLSGVII 274


>gi|71902056|ref|ZP_00684097.1| type II secretion system protein [Xylella fastidiosa Ann-1]
 gi|71728184|gb|EAO30374.1| type II secretion system protein [Xylella fastidiosa Ann-1]
          Length = 405

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 7/159 (4%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   + AG P+  A++++     +         V +    G  LS ++ R        
Sbjct: 73  QQLAALLGAGQPLDRALSILTDLPDNEKSRLIIGDVCDIVRGGTPLSIALER-----QHG 127

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S     ++   + GGN+ E L  L+  L   + ++AKV    +      +++G     
Sbjct: 128 VFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFVVGGALAF 187

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
           +   V          L +        GV A    IG   
Sbjct: 188 LLGYVVPQFGAMYESL-DVALPWFTQGVLALGHFIGDWW 225


>gi|332531030|ref|ZP_08406949.1| general secretion pathway protein F [Hylemonella gracilis ATCC
           19624]
 gi|332039511|gb|EGI75918.1| general secretion pathway protein F [Hylemonella gracilis ATCC
           19624]
          Length = 412

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESI 69
                   +   V AGLP+  A+A +    S        +    ++ +  + G + + ++
Sbjct: 70  QLAVWTRQLAGLVAAGLPLERALASLAQDLSQDSGSPEQQRLIAQLRDEVNGGSTFARAL 129

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           ++  R             +    + GG L + L  L+  L  ++ ++AK+   ++     
Sbjct: 130 AQHPRTFDDS-----YVAVVSAGEQGGQLGQVLDRLADELDGQEVLRAKLMGAALYPLIV 184

Query: 130 AWIIGSLPFCVSTLV 144
           +     +   + T V
Sbjct: 185 SGFSCVIVAFLLTYV 199


>gi|237802999|ref|YP_002888193.1| general secretion pathway protein F [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274233|emb|CAX11027.1| general secretion pathway protein F [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 179 IGVIPTLKETFEDM 192


>gi|223040652|ref|ZP_03610922.1| type II secretion system protein [Campylobacter rectus RM3267]
 gi|222878110|gb|EEF13221.1| type II secretion system protein [Campylobacter rectus RM3267]
          Length = 416

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           I    VRAG+P++DA+        +  +  +   +      G+SL+E+     +      
Sbjct: 285 IFTELVRAGIPIADALETATLTVENQDIHDKLATIRLAVSRGVSLTEAFRD-TQLYESML 343

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
           +   S       + GG +   L  ++           K +   +    S+++   +   +
Sbjct: 344 IQMLS-----AGEKGGAIDAMLEKITDYY--------KAKFSDLVDNISSYVEPIMLLFM 390

Query: 141 STLVYFTSPGYMNVLIN 157
           + +V   + G    + +
Sbjct: 391 AGMVILLALGIFMPMWD 407


>gi|119503099|ref|ZP_01625184.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2080]
 gi|119461445|gb|EAW42535.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2080]
          Length = 396

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 12/138 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE- 80
           +   +RAGLP+  A+ V++       +R+    +++    G SLS ++       P  E 
Sbjct: 66  LSVLLRAGLPLDRALKVLIDMDGQPRMRAVLADLLKAVKGGKSLSLALQ------PYDEI 119

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              F   +    +  G LS  L  L   L   K  +  +          A ++      V
Sbjct: 120 FGPFYLSMVRAGEASGQLSAVLERLVEHLESAKATRDSI---VSALIYPAILLVVAVISV 176

Query: 141 STLVYFTSPGYMNVLIND 158
             ++ F  P     L ND
Sbjct: 177 VVMLGFVVPQ-FETLFND 193


>gi|148259903|ref|YP_001234030.1| type II secretion system protein [Acidiphilium cryptum JF-5]
 gi|146401584|gb|ABQ30111.1| type II secretion system protein [Acidiphilium cryptum JF-5]
          Length = 406

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D   +    +   + AGL +  A+    G ++ P VR+    + +    G +L  ++   
Sbjct: 67  DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAW 131
            R  P      F   +    +  G L+  L +L+ +L   ++++ A +  L+  A  +  
Sbjct: 127 PRSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             G++ F ++ ++    P ++ +   +  G  L       + IG
Sbjct: 182 ATGAIVFLLTNVL----PEFVPIFAEN--GVPLPATTRLLLTIG 219


>gi|77918004|ref|YP_355819.1| general secretory pathway protein F [Pelobacter carbinolicus DSM
           2380]
 gi|77544087|gb|ABA87649.1| general secretory pathway protein F [Pelobacter carbinolicus DSM
           2380]
          Length = 408

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 12/165 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
               +    +AG+P+  A+  +   +  P+ +E    V++    G  LS ++ R  +  P
Sbjct: 72  FCRQMYSLTKAGVPLLRALRGMTESACKPIMAETLLAVLDDLESGHDLSSALRRHSKVFP 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSR-ILRDRKNMKAKVQALSMEAKASAWIIGSL 136
                    +I V  +  G L ++   ++  ++R+++        +    +  ++++ ++
Sbjct: 132 ----PLLVNMIQV-GESSGRLDDSFNEVATYLIREKQTADQ----IKAALRYPSFVLVAI 182

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
              ++ +  F  P     L       + L       +    V   
Sbjct: 183 SIAIAIITLFVIPA-FEKLFKSQGAQLPLPTRIILGISNFAVSWW 226


>gi|311695301|gb|ADP98174.1| type IV pilus biogenesis protein PilC [marine bacterium HP15]
          Length = 406

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +    E    I      G S + ++ +  R+      
Sbjct: 75  LATMMKAGVPLVQSFDIVADGLENKGLQELILAIRNDIASGTSFAGALRKHPRH-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           +     +    +  G L + L  ++  L   + +K KV+ 
Sbjct: 130 NDLYCSLVDSGEKAGALEQMLDRIATYLEKSELLKKKVKK 169


>gi|289525615|emb|CBJ15093.1| general secretion pathway protein F [Chlamydia trachomatis Sweden2]
 gi|296435176|gb|ADH17354.1| general secretion pathway protein F [Chlamydia trachomatis E/150]
 gi|296438896|gb|ADH21049.1| general secretion pathway protein F [Chlamydia trachomatis E/11023]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V          +
Sbjct: 179 IGVIPILKETFEDM 192


>gi|104781569|ref|YP_608067.1| type II secretion pathway protein F [Pseudomonas entomophila L48]
 gi|95110556|emb|CAK15264.1| putative type II secretion pathway protein F [Pseudomonas
           entomophila L48]
          Length = 396

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD--PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   + AGLP+ DA+  +  ++S   P R     ++   + G SLS++++R  +  P   
Sbjct: 67  LATLLNAGLPLIDALESLAEKASAGTP-RKTLELLVRQLYEGRSLSQALARQPQVFPS-- 123

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                  +   S+  G L +ALA      R R ++  +    + 
Sbjct: 124 ---LYVALVQSSERTGALGDALARYIGY-RQRLDLVRQKLVGAS 163


>gi|89074489|ref|ZP_01160966.1| putative general secretion pathway protein F [Photobacterium sp.
           SKA34]
 gi|89049777|gb|EAR55327.1| putative general secretion pathway protein F [Photobacterium sp.
           SKA34]
          Length = 408

 Score = 36.6 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+A +P+ + +  +  Q+  P +++    V      G +L++S++           
Sbjct: 77  LATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEYPHI-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K+Q   +       +  S+   V+
Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P  ++  +    G  L  +    +     V
Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|229164942|ref|ZP_04292757.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
 gi|228618526|gb|EEK75537.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
          Length = 276

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IK+       + P  L  +++ ++      +AV      +   +R     +     
Sbjct: 119 LKIRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 177

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 178 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 233


>gi|218133637|ref|ZP_03462441.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991012|gb|EEC57018.1| hypothetical protein BACPEC_01506 [Bacteroides pectinophilus ATCC
           43243]
          Length = 403

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISR 71
           + D           ++AG+ V +A++++  Q+ +  +++  + V      G +LS ++  
Sbjct: 63  VRDLSVFCRQFSSIIKAGVNVINALSMMSEQTENKKLKAAIKNVQSNVEKGETLSSAMRS 122

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P   VS  +          G  S +L      +  +    AK+  +  +A     
Sbjct: 123 EGDIFPSLLVSMVAA---------GEASGSLETAIERMAIQFEKDAKISGMVKKAMIYPI 173

Query: 132 IIGSLPFC-VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM 172
           I+  +    V  ++ F  P +M++          + V    M
Sbjct: 174 ILIVVMIGVVIAMMMFVIPNFMDMFEGLDAEMPFMTVMVINM 215



 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I+   + AG+P+  A+ +  G   + +   F+  ++    G++L        + + +  +
Sbjct: 275 IMSTLLSAGMPMISAIEIAAGTMDNVL---FKDALQKVRSGVALG---MGFSQQIGVTRL 328

Query: 82  --SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             +    ++ +  + G N+ + L N++    +    + ++   S+ A     II  +   
Sbjct: 329 FPAMLVHMVGIGEETG-NIEDMLTNVANYYDE----EVELATQSVTALMEPMIIIVMAVV 383

Query: 140 VSTLVYFT 147
           V  LV   
Sbjct: 384 VGALVLAI 391


>gi|188993089|ref|YP_001905099.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris str. B100]
 gi|73916935|gb|AAC27376.3| XpsF [Xanthomonas campestris]
 gi|167734849|emb|CAP53060.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris]
          Length = 405

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 1   MKHLIKKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIET 58
           ++ L+  R   F           +   + AG P+  A+++++    D   R     + +T
Sbjct: 54  LRMLL--RKKPFDNASLVQFTQQLATLIGAGQPLDRALSILMDLPEDDKSRRVIADIRDT 111

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G  LS ++ R          S     +    + GG++ + L  L+  L   + +K K
Sbjct: 112 VRGGAPLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGK 166

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           V    +       ++G     +   V          L
Sbjct: 167 VINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESL 203


>gi|531742|emb|CAA56981.1| xcpS [Pseudomonas putida]
          Length = 400

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           +               +     AG+P+ DA+A +  Q   P + S    +  +   GL L
Sbjct: 53  RHQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGL 112

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + S++R          S     +    +  G L++ L  L+  L   +  + K +   + 
Sbjct: 113 ARSLAR-----QGASFSGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALI- 166

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 167 --YPCVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITALLIGLSQGLV 216


>gi|239905315|ref|YP_002952054.1| putative general secretion pathway protein F [Desulfovibrio
           magneticus RS-1]
 gi|239795179|dbj|BAH74168.1| putative general secretion pathway protein F [Desulfovibrio
           magneticus RS-1]
          Length = 409

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 29  AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           +G+PV   + ++VG   +  +  EFRR+ E    G  L+  +SR   + P        T+
Sbjct: 286 SGVPVLTTIDILVGTIGNAAIAKEFRRIQEMIKSGQGLAGPLSRAKYFTP-----MVVTM 340

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           ++V  + G NL E L+ +S       +  A+V       + S  +   L   ++ +V F 
Sbjct: 341 VAVGEESG-NLDEMLSAISE------HYDAEVA--FAVKRLSDALGPVLIVGLAGVVGFF 391

Query: 148 SPGYMNVLIN 157
           +      + +
Sbjct: 392 ALAIFMPMWD 401


>gi|228912547|ref|ZP_04076212.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
           200]
 gi|228847117|gb|EEM92106.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
           200]
          Length = 288

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 3   HLIKKRTAKFLD----DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +L+K+R  + ++    + P  L  +++ ++      +AV      +   +      +   
Sbjct: 129 YLLKRRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLHPYVSTLTAE 187

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 188 LEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|190572738|ref|YP_001970583.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
 gi|190010660|emb|CAQ44269.1| putative general secretion pathway protein F [Stenotrophomonas
           maltophilia K279a]
          Length = 406

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           + L+++R  +           +   + AG P+  A+++++G   D   R     + +   
Sbjct: 56  RTLLRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ R          S     +    + GG+L E L  L+  L   + ++ KV 
Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVI 169

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +       ++G     +   V          L
Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204


>gi|254284153|ref|ZP_04959121.1| type II secretion system protein [gamma proteobacterium NOR51-B]
 gi|219680356|gb|EED36705.1| type II secretion system protein [gamma proteobacterium NOR51-B]
          Length = 397

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL +  A+ V++       +R+    V+++   G +LS ++            
Sbjct: 67  LSTLLRAGLSLDRALKVLIDMDGQPRMRAVISEVLKSVKGGKALSIALQPFE-----ASF 121

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G LS  L  L   L   K  +  V         SA I  ++   V+
Sbjct: 122 GTFYLSMVRAGEASGQLSSVLDRLVEHLESAKTTRDSV--------ISALIYPAILLVVA 173

Query: 142 TLVYFTSPGYMNVLIND 158
            +      G++      
Sbjct: 174 VISIVVMLGFVVPQFET 190


>gi|314974319|gb|EFT18415.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314980647|gb|EFT24741.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|315090038|gb|EFT62014.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315096613|gb|EFT68589.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|327325749|gb|EGE67544.1| membrane associated protein [Propionibacterium acnes HL096PA2]
 gi|327330163|gb|EGE71913.1| membrane associated protein [Propionibacterium acnes HL096PA3]
 gi|327333257|gb|EGE74978.1| membrane associated protein [Propionibacterium acnes HL097PA1]
 gi|327443398|gb|EGE90052.1| hypothetical protein HMPREF9570_02379 [Propionibacterium acnes
           HL043PA1]
 gi|327447490|gb|EGE94144.1| hypothetical protein HMPREF9571_01040 [Propionibacterium acnes
           HL043PA2]
 gi|327456789|gb|EGF03444.1| hypothetical protein HMPREF9581_00006 [Propionibacterium acnes
           HL087PA3]
 gi|328760173|gb|EGF73748.1| membrane associated protein [Propionibacterium acnes HL099PA1]
          Length = 297

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|150401576|ref|YP_001325342.1| hypothetical protein Maeo_1153 [Methanococcus aeolicus Nankai-3]
 gi|150014279|gb|ABR56730.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3]
          Length = 342

 Score = 36.6 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESISRM 72
               A+  +V  + +G  + + +  I   S    V  EF+ VI      G +  ES+ R 
Sbjct: 171 QIMMAMLHMVSMLNSGASLQECIKNIGSNSDYGIVSFEFKNVIYDIVRGGYNFKESLERA 230

Query: 73  VRYMPLQEV-SFFSTVISVQSQLGGNLSEALANL-SRILRD 111
                +  +   ++ +I+  +Q  G L   L NL   I+R+
Sbjct: 231 KNRTGISLMEKLYAQLITASNQGKGQL--LLQNLYGEIIRE 269


>gi|90581087|ref|ZP_01236887.1| putative general secretion pathway protein F [Vibrio angustum S14]
 gi|90437783|gb|EAS62974.1| putative general secretion pathway protein F [Vibrio angustum S14]
          Length = 408

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+A +P+ + +  +  Q+  P +++    V      G +L++S++           
Sbjct: 77  LATLVQASMPLEECIKAVAEQNEKPRLKNILLAVRSRVVEGYTLADSMAEYPHI-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+    +R+ M++K+Q   +       +  S+   V+
Sbjct: 132 DQLFRAMVAAGEKSGHLDTILNRLADYTENRQQMRSKLQQAMIYPIMLTLVAVSV---VA 188

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P  ++  +    G  L  +    +     V
Sbjct: 189 FLLATVVPKIVDQFVQ--MGQQLPTITEVLLAASNFV 223


>gi|309389143|gb|ADO77023.1| Type II secretion system F domain protein [Halanaerobium praevalens
           DSM 2228]
          Length = 343

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +++GL ++  + ++  QS     +E    +++    GL+L+ ++                
Sbjct: 19  LQSGLSLNRTLLIMAQQSRSEREAEIYSNLLKNIESGLTLASALKEEKI------FKDLF 72

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             I    +  G+L   L +L    + +  +K +++           +I +L      +  
Sbjct: 73  IEIVRAGEKSGSLVSVLTSLEEYYKSKNELKKEIKKACF---YPLTVIITLILAAFFIFK 129

Query: 146 FTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           F  P ++++          L      + +G 
Sbjct: 130 FILPVFVDLFAEFNGQLPFLTRILLSLSLGF 160


>gi|217977096|ref|YP_002361243.1| type II secretion system protein [Methylocella silvestris BL2]
 gi|217502472|gb|ACK49881.1| type II secretion system protein [Methylocella silvestris BL2]
          Length = 404

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R G  +++A+ ++   S    +R    ++      G S ++S++      P    
Sbjct: 74  LALLLRTGARINEALELVATDSDVGRLRPTIAKLTAAILGGESFADSLAHHPALFP---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  ++ V  +  GNL   L  ++      + ++ KV       +  A+++ +    + 
Sbjct: 130 PMYVALVRV-GETSGNLVPVLEAIAAERTRAEALRRKV---GDALRYPAFVLSAAGAVLI 185

Query: 142 TLVYFTSPGYMNVL 155
             + F  P +  VL
Sbjct: 186 FFLTFVLPQFGAVL 199


>gi|34557761|ref|NP_907576.1| putative ferrous iron transport protein B [Wolinella succinogenes
           DSM 1740]
 gi|34483478|emb|CAE10476.1| PUTATIVE FERROUS IRON TRANSPORT PROTEIN B [Wolinella succinogenes]
          Length = 759

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSL 65
           K+R  +F      A +  V ++  G     A+       +     EF    + + +G++ 
Sbjct: 484 KERQEEFDRSIQGAYERFVDALE-GNSYQAALNTPQRVMA---LIEFSENYKQKRMGITT 539

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            E++SR+       E  FF     V+ +     ++    L +I+  RK +  +V+
Sbjct: 540 QEALSRLDEKYAQIEPLFFKI---VRDRSDKEAAKVERALRQIISARKTLFREVK 591


>gi|295089940|emb|CBK76047.1| Type II secretory pathway, component PulF [Clostridium cf.
           saccharolyticum K10]
          Length = 348

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
                  I   +++ +P+ + ++V+   +S P   E    + +   +G   SE++S    
Sbjct: 12  LSGFCMQISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC 71

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                    + T ++V  +  G L E + +LSR       +   ++         A +I 
Sbjct: 72  ------FPAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIV 122

Query: 135 SLPFCVSTLVYFTSP 149
            L   +  L     P
Sbjct: 123 MLLVILFILFTRVMP 137


>gi|257453562|ref|ZP_05618852.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60]
 gi|257449020|gb|EEV23973.1| pilin biogenesis protein [Enhydrobacter aerosaccus SK60]
          Length = 407

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMP 77
            +  +   ++AG+P++ +  ++     +P   E    V      G + + ++ +  RY  
Sbjct: 72  FVRQLATMMKAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFD 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLS 106
                 F +++    +  G L   L  ++
Sbjct: 132 ----DLFCSLVE-AGEQSGALETMLERVA 155


>gi|313831096|gb|EFS68810.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
          Length = 297

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
            +D++V    A     DA+      S  P+  + R+V+    L  +     + R+   + 
Sbjct: 161 FIDLVVLERLANETSVDALTNAANMSDSPLFVQIRQVLNRASLENVDPWNGLDRLAEDIK 220

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           L E++   ++  +Q++ G +L ++       LRD   ++ + ++ ++  +   W I    
Sbjct: 221 LPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQAG 279

Query: 138 FCVSTLV 144
             +  L+
Sbjct: 280 SVMLILL 286


>gi|302897922|ref|XP_003047741.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728672|gb|EEU42028.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 202

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 26  SVRAGLPVSDAVAVIVGQSS-----DPVRSEFRRVIETQHLGLSLSESISRMVRYMP--L 78
           +V +G+ +  A+  +            ++ +F  +I+       L+E+++++ + +P   
Sbjct: 6   AVASGIAIVQALEAVRKTVGLIREIPEIQGDFDGLIKEL----DLTEAMAKVAQQIPSNS 61

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSR 107
            E  F +      +++   L++ L + +R
Sbjct: 62  PEQDFLAKATEQVNEVTSELNKVLESCAR 90


>gi|255507168|ref|ZP_05382807.1| general secretion pathway protein F [Chlamydia trachomatis
           D(s)2923]
          Length = 391

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LALLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVYFTSPGYMNVL 155
             V  T       +
Sbjct: 179 IGVIPTLKETFEDM 192


>gi|330981426|gb|EGH79529.1| type II secretion system protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 400

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMV 73
              +    +   + AG P+  ++ +++ Q      ++   R+ E    G  LS ++    
Sbjct: 63  ALVSFTQQLATLLGAGQPLERSLGILLKQPGQSQTKALIERIREQVKAGKPLSVALEEEG 122

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                   S     +    + GG L   L  LS  L   + ++ +V    +     A+++
Sbjct: 123 SQ-----FSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALI---YPAFLV 174

Query: 134 GSLPFCVSTLVYFTSPGYMNVL 155
             +   ++ L+ +  P ++ + 
Sbjct: 175 VGVLGSLALLLAYVVPQFVPIF 196


>gi|171060549|ref|YP_001792898.1| type II secretion system protein [Leptothrix cholodnii SP-6]
 gi|170777994|gb|ACB36133.1| type II secretion system protein [Leptothrix cholodnii SP-6]
          Length = 397

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  + AGL + +AV ++   ++     +    +    H G   S+++       P    
Sbjct: 68  LVSLLGAGLSLVEAVDLLAEKETGRSAAAVLTELRTDLHRGQRFSDALEHHPAVFP---- 123

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + G    +    +SR L   + +    + +   +     ++G      +
Sbjct: 124 PMFVATVRASERTG----DIQEAVSRFLAYHQQLDRIRRRVVSASVYPLMLMGVGLLVTA 179

Query: 142 TLVYFTSPGY----------MNVLINDPRGHMLLGVAAAFMLIGIM 177
            ++ F  P +          +  L     G   L  A A + +G++
Sbjct: 180 FMLLFVVPKFSRIYEEIGGQLPFLTRLLIGWGQLLEAHAALTLGVL 225


>gi|309806178|ref|ZP_07700194.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167397|gb|EFO69560.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 331

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS  I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   +  +  F      +   +      ++        IG  
Sbjct: 125 MVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFIGCF 166


>gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1]
 gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 290

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 48/140 (34%), Gaps = 2/140 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           + AK   + P  +  I + ++A   V   +      + +    E   +        S   
Sbjct: 141 KRAKIESELPRFVATITQELKASRDVLGMLENYKKNAGEEFAVELDILTADMRS-SSYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R    +    +S  +  + +    G + +     L+  ++  +  + K QA+ +  K
Sbjct: 200 ALTRFEARINSPMLSDLTRGL-IGVLRGDDGAMYFQMLAHDMKQLELQRLKAQAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
              +    L   + T +   
Sbjct: 259 IRVFSFIMLMCFLLTYIAVI 278


>gi|289674983|ref|ZP_06495873.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 405

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I   + +P +++    + +    G S + ++ +   Y      
Sbjct: 75  MATMMKAGVPLLQSFDIISEGAENPNMQTLVNSLKQEVSAGNSFATALRQKPEY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +KAK++        +A +I +      
Sbjct: 130 DDLYCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIK--KAMTYPTAVLIVAAIVTGI 187

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P + +V            L V      +    +
Sbjct: 188 LLIKVV-PQFQSVFSSFGAALPTFTLMVVGLSEFVQQWWL 226


>gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium botulinum Ba4 str. 657]
 gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium botulinum Ba4 str. 657]
          Length = 164

 Score = 36.6 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K  I K    FL  ++ P  L+ +++ ++ G+PV   +  I               +  
Sbjct: 5   IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADLINLCVTK 64

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKA 117
            + G+ +++++  +            + +I    +   NL + L  L + +  +R N+K 
Sbjct: 65  VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKT 124

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           +    + +   + +    + + +  ++    P
Sbjct: 125 E---HADKLDNALFFPMLIGYFIPLIIMILVP 153


>gi|322434575|ref|YP_004216787.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321162302|gb|ADW68007.1| Type II secretion system F domain protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 399

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 20/170 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           ++AGLP+  ++ ++  +      R++   V      G S+S +                 
Sbjct: 73  IKAGLPILGSLDLLARRQKVLNFRAQLEDVATRVKTGESISSAFE------AQGGFPIVY 126

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
           T   +  +  GNL E L       R     + K++A  +       ++  L   + T V 
Sbjct: 127 TTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPSLLIVMVIGLFIFLITFVV 186

Query: 146 FTSPGYMNVLIND---------PRGHML----LGVAAAFMLIGIMVMRLM 182
                  + L              G       L VAA   L+G ++ R M
Sbjct: 187 PRFAQLYDQLNTHLPALTVFLLDLGRNAQTYGLYVAAVVGLVGYLIYRWM 236


>gi|163803453|ref|ZP_02197326.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4]
 gi|159172754|gb|EDP57602.1| type IV pilin biogenesis protein PilC [Vibrio sp. AND4]
          Length = 407

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+  A+ ++        ++S    +      G  +S+++         +  
Sbjct: 76  ITTMLMTGVPIVQALKLVAKSHKKAEMKSTLMSITRAVEAGTPISKAMG-----TTSKHF 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               T +    +  GNL +    L+      + ++A+V    +    +  I+ +L  C  
Sbjct: 131 DPLYTNLIATGEQSGNLPQVFDRLATYREKSEQLRARVAKALIYP--TMVILVALGVCYL 188

Query: 142 TLVYFTSPGY 151
            L     P +
Sbjct: 189 MLTQVI-PEF 197


>gi|29828880|ref|NP_823514.1| hypothetical protein SAV_2338 [Streptomyces avermitilis MA-4680]
 gi|29605985|dbj|BAC70049.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 701

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 16  FPNALD-IIVRSVRAGL----PVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESI 69
             +A++ +++RS RAG     P++D VA +   +  DP   E RR        + L+++ 
Sbjct: 348 LRDAVEHLLLRSPRAGQRRTVPLADFVAALARDTGVDPGTPELRRWAADLDAEIDLNDAF 407

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
            R         +     V+S+ S +G +  E+L
Sbjct: 408 VRQADRTRDTRLRL---VVSLHSAVGDDWPESL 437


>gi|171915471|ref|ZP_02930941.1| General secretion pathway protein F [Verrucomicrobium spinosum DSM
           4136]
          Length = 434

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 18/151 (11%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSE 67
             +F   F   L+ +   +  GLP+  A+ ++   + +  +R+    V      G SLS 
Sbjct: 295 RTRFEVQF---LETLGNLLHNGLPLHRALELVRKATVNQFLRTRLGDVEAAVADGGSLSR 351

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           ++ +     P         ++ V  Q G  LS AL             + +        +
Sbjct: 352 ALEKANVVRP-----LVIDMVRVGEQTG-ELSTALQKAG--------TRFESHLSKAMDR 397

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVLIND 158
           A+A +   +   ++++V   +   +NV+   
Sbjct: 398 ATALLQPVIILVMASMVGTMAWMMINVVWAT 428


>gi|168701600|ref|ZP_02733877.1| general secretion pathway protein F-putative pilus protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 344

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                  ++  S+ AGL               P+R+    + +    G SL +++     
Sbjct: 12  ALVEWCRVLRFSLSAGLDPLKIFKQQAKSGPRPLRALAGDLAKRLAKGSSLEDALEPHRD 71

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANL----SRILRDRKNMKAKVQALSMEAKASA 130
             P      F  +++V  Q G  L +    L    +  L  ++  +A++    +   A+ 
Sbjct: 72  KFP----PLFVELVAVGEQTG-RLDDTFQELEQYFAAALTTQRRFRAQMAYPVINYVAAV 126

Query: 131 WIIGSLPFCVSTLVYFTSP 149
            I+ +L F +  L     P
Sbjct: 127 GIVTALIFILGMLGSKMDP 145



 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
            R +     G  L E++       P      F   +    + G   SE +  L+  LR+ 
Sbjct: 244 ERAVAVVKRGSELVEALE--ASRAPFP--QDFIGALMTGEETGNT-SEVMDRLAEHLRED 298

Query: 113 KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRG 161
            +     + +   A+ + ++I  +   +     F     ++ + ++  G
Sbjct: 299 AD-----RKMKGAAQMTGYMIYGMVALMIIFFIFRIATAISGVYSEALG 342


>gi|330828058|ref|YP_004391010.1| type IV pilus assembly protein tapC [Aeromonas veronii B565]
 gi|328803194|gb|AEB48393.1| Type IV pilus assembly protein tapC [Aeromonas veronii B565]
          Length = 413

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  ++ +I        +R    ++      G  +SE++    R  PL   
Sbjct: 82  ITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEAL----RRHPLY-F 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++           +I       S
Sbjct: 137 DDLYCDLVEAGEQSGALETIYDRIATYREKSEALKSKIKK---AMFYPTMVILVAIVVTS 193

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + ++ 
Sbjct: 194 ILLLFVIPQFEDIF 207


>gi|74316771|ref|YP_314511.1| type II secretory pathway component PulF [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056266|gb|AAZ96706.1| type II secretory pathway component PulF [Thiobacillus
           denitrificans ATCC 25259]
          Length = 407

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
                      +  S+++G+PV+ A++V+   + +  + S     +E    G+   ESI 
Sbjct: 268 LRSTLGRFARTLALSMKSGIPVAQALSVVAEVTDNAWIGSR----VEQMRNGIERGESIL 323

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
           R  ++  +   +     +    +  G++ E +  ++ +    + +  +++ L      SA
Sbjct: 324 RTAQHAGV--FNAVVLQMIAVGEETGSIDELMQEVAEMYE--REVDYEIKTL------SA 373

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLIN 157
            I   +   +  LV   + G    + +
Sbjct: 374 RIEPIIIAAMGGLVLVLALGVFLPMWD 400



 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 27  VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAG+P+  A+A ++  +++         + E+   G  LS ++ +  R       S F 
Sbjct: 80  LRAGVPILRALAGLIESTANLAFARVIASLKESLEAGRDLSTAMRQHPRV-----FSPFY 134

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +    +  G L E    +   L   +  +A+++      +   +++ ++   V+ +  
Sbjct: 135 VAMVRVGEATGRLDEIFLRMFEHLEFERETRARIKEAL---RYPTFVLIAMVVAVAVINV 191

Query: 146 FTSPGY 151
           F  P +
Sbjct: 192 FVIPAF 197


>gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
 gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
          Length = 400

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+  A+  I  QS D  + +    + +    G +L+E+  +  R       
Sbjct: 70  LSTLVNAALPLESALKAISRQSEDKKLSALVSDIRDKVVEGHTLNEAFGQFPRI-----F 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 + +  +  G L + L  L+     R+ MK+++ QA+      +   I  +   +
Sbjct: 125 DKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPITLTVVAIAVIGILL 184

Query: 141 STLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLIGIMV 178
             +V    P  ++   +           L+ V+      G+ +
Sbjct: 185 VAVV----PQVIDQFTHMKQQLPITTRTLIAVSDFLQAWGLYI 223


>gi|255316491|ref|ZP_05358074.1| hypothetical protein CdifQCD-7_19182 [Clostridium difficile
           QCD-76w55]
          Length = 298

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+ +K++  K L  FP+ ++++   + + + +  A+   +      V +E+ ++ +   
Sbjct: 146 LKNAVKEKKLKILSGFPDFINVVQGFLVSDMTLVKAIESSI----PYVGTEWSKLAQEFV 201

Query: 61  L---GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
           +     S  + I  +   + + EV    ++I + S+ G N+ E  +N ++ + D   +  
Sbjct: 202 IDSKTNSQEKCIEIIYEKIDIFEVRELWSLIKLNSEQGINIKECFSNQAKKITD---LNM 258

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           ++    +  +     +   P  +  L+  + P
Sbjct: 259 ELIHKKINTRQIMATLVQAPLLLLLLIAISLP 290


>gi|114330526|ref|YP_746748.1| type II secretion system protein [Nitrosomonas eutropha C91]
 gi|114307540|gb|ABI58783.1| type II secretion system protein [Nitrosomonas eutropha C91]
          Length = 394

 Score = 36.6 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVR 74
             N    ++  + AGL + + +  +V +  D  VR   ++++   H G++LS ++    +
Sbjct: 58  LSNFSQELLALLTAGLNLVEGIETLVEKEEDSAVRELLQQILVRLHEGMTLSRALESHPQ 117

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
             P      +   I    Q G +L+EAL            ++ K+   S+       + G
Sbjct: 118 TFP----PLYVATIRASEQTG-DLAEALTRYLTYQSQMDLVRKKLVGASIYPVLLLVLGG 172

Query: 135 SLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGV 167
            +   +   V          +  D     +L +
Sbjct: 173 LVAIFLLVFVVPKFSAIYEDMSTDLPWMSMLLI 205


>gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3]
 gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3]
          Length = 294

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +      R  +        LD++   +  GL +  A+            +E R  ++   
Sbjct: 137 LHRRASARRQETRLAVAAYLDLVRILLVGGLSLHTALQTAADAGRGWAFTEIRAALQWAR 196

Query: 61  LGLSLSES-ISRMVRYMPLQEVSFFSTVISVQSQ 93
                 ++ ++R+   +P+ E +     +S   +
Sbjct: 197 ARHVPPDAGLNRLAVRVPVAEFAELRLTVSSALR 230


>gi|326202875|ref|ZP_08192742.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782]
 gi|325986952|gb|EGD47781.1| hypothetical protein Cpap_2184 [Clostridium papyrosolvens DSM 2782]
          Length = 319

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +++ IK+R        P+ +D    S  +   +  A+      ++  +     RV ++  
Sbjct: 148 LRYSIKQRI-------PSFIDSFRSSFVSQNRIKPALQECCSNANKHLARIMLRVSDS-- 198

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               +++S+  +   +     + F T++    + GG L   L  L++ +    N++ K  
Sbjct: 199 --SDINDSLCAVRGRINDIWFNIFVTLLINYRENGGELINQLYKLNKTITRYNNIEKKKN 256

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY-MNVLINDPRGHMLLGVAAAFMLIGIMVM 179
              +  +            V  L+     G  M +  N  +    + + +   LI + V+
Sbjct: 257 RRLIWYEFFTLGASIFSLPVIMLINRMILGANMRLYYNTAQAAGKIAIYSLSALIIVRVL 316

Query: 180 RLM 182
           R +
Sbjct: 317 RRL 319


>gi|218289535|ref|ZP_03493763.1| hypothetical protein AaLAA1DRAFT_1349 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240403|gb|EED07585.1| hypothetical protein AaLAA1DRAFT_1349 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 326

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 32  PVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSES---ISRMVRYMPLQEVSFFSTV 87
            +  A+   V      P+R    R+ +      +  ++   + R V+ +     +  ++ 
Sbjct: 164 SMLHALQSTVEHLPPSPIRRAVARLTDRLTDYTTPGDARRALHRFVKELGTSWAAQLASD 223

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL-PFCVSTLVYF 146
           I      G N+  +LA L +  ++ ++ +       ++    + +   + P  +     F
Sbjct: 224 IEHALLDGVNVEASLALLHKEFQEIEDARKSQNLARIDTLLISCVPFLMWPVMMVLFYLF 283

Query: 147 TSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            S         +P G     +      +G  ++
Sbjct: 284 VSRNIFQYQFANPTGFTWFLLTL-LATLGSFII 315


>gi|332523369|ref|ZP_08399621.1| putative magnesium and cobalt transport protein CorA [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314633|gb|EGJ27618.1| putative magnesium and cobalt transport protein CorA [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 305

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
            +   L   L+E+ +   +   L+    FS  ++            L      +R+    
Sbjct: 180 SQLLDLSQELAENENNFFQEENLRFFHLFSARVARLQST----VLMLRETIIQIREMAKS 235

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
           + +++     A  +      +P  +    Y  +  YM  L   P G+ L+ + A  + I 
Sbjct: 236 QLEMRQNKNMAILTTVTTCCMPLTILVGWYGMNFKYMPEL-ASPLGYPLVIIFAVTIFIA 294

Query: 176 IMVMRL 181
            ++   
Sbjct: 295 AILYSK 300


>gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
 gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM
           44928]
          Length = 297

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 49/137 (35%), Gaps = 14/137 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES----ISRMVR 74
            LD    ++  G  +  A+ V       PV   FR + ++        E     +  + +
Sbjct: 161 FLDQAATTLAGGAGIEQAL-VAAADGHGPV---FRAIRDSITDSRLAREPAWPHLDALGK 216

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + ++E+   +   ++    G  +  ++A  +R +R+R+         +   +       
Sbjct: 217 RLGIRELCELAAACTLAGAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERL------ 270

Query: 135 SLPFCVSTLVYFTSPGY 151
           ++P  +  + +     Y
Sbjct: 271 AMPGGLLGMSFVCFLTY 287


>gi|258515887|ref|YP_003192109.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779592|gb|ACV63486.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 401

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              + +G+P+  A+ + +  +         +++     G SLS ++S   R+ P      
Sbjct: 73  ASLINSGIPILKALILSMQTNKKSFNVVLDQLVLDLKAGSSLSGAMSNYPRFFP----KI 128

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
           F  +I+   + GG L + L  L+    +  ++  KV+A          ++ +   C+  +
Sbjct: 129 FIGMIA-AGESGGVLGQVLDRLAIHFENVSSLSDKVKAALS---YPVLVVATAILCLVLM 184

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAA 170
           +    P +  +L +       + V   
Sbjct: 185 MTMVLPVFEGMLQDVNASLPFITVVVV 211


>gi|226325873|ref|ZP_03801391.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758]
 gi|225205997|gb|EEG88351.1| hypothetical protein COPCOM_03686 [Coprococcus comes ATCC 27758]
          Length = 55

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 21/55 (38%)

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +  +P  +   +  + P +M  L  +  G + + +     +    +   ++  +V
Sbjct: 1   MSVIPLGIIGYMRLSFPEFMAGLYGNLPGAVFMSICLGAYIAAWRLGCKIVEIEV 55


>gi|295115046|emb|CBL35893.1| Type II secretory pathway, component PulF [butyrate-producing
           bacterium SM4/1]
          Length = 348

 Score = 36.2 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVR 74
                  I   +++ +P+ + ++V+   +S P   E    + +   +G   SE++S    
Sbjct: 12  LSGFCMQISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC 71

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
                    + T ++V  +  G L E + +LSR       +   ++         A +I 
Sbjct: 72  ------FPAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIV 122

Query: 135 SLPFCVSTLVYFTSP 149
            L   +  L     P
Sbjct: 123 MLLVILFILFTRVMP 137


>gi|194364325|ref|YP_002026935.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347129|gb|ACF50252.1| type II secretion system protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           ++L ++R  +           +   + AG P+  A+++++G   D   R     + +   
Sbjct: 56  RNLFRQRPLQ-GAALLQFTQQLATLLGAGQPLDRALSILLGLPEDERSRRAITDIRDVVR 114

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS ++ R          S     +    + GG+L + L  L+  L   + ++ KV 
Sbjct: 115 GGAPLSTALER-----QHGLFSRLYVNMVRAGEAGGSLHDTLQRLADYLERSRALQGKVI 169

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +       ++G     +   V          L
Sbjct: 170 NALVYPAILLVVVGGALLFLLGYVVPQFAQMYESL 204


>gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 395

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV----IETQHL 61
            ++     +        +   + AGLPV  A+ +I    ++     F+R+    +E    
Sbjct: 48  HRQRRVPEEHLIRFFFDLSDLLSAGLPVDRALGLISSNQTN---KVFQRISKGLLEEVQG 104

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  LS ++++             S  +    +  G L   L  L+  L  R+  +   Q+
Sbjct: 105 GSDLSGALAKYRHVFG-----NLSDHMVRAGEASGTLGPILRRLAEYLEQRRTFR---QS 156

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           L       A +  +    +  L+ +  P +  + 
Sbjct: 157 LVSSMIYPAILFATSLISMVVLLVYVIPNFAKIF 190


>gi|229113405|ref|ZP_04242856.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
 gi|228670019|gb|EEL25411.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
          Length = 281

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K  IK+       + P  L  +++ ++      +AV      +   +R     +     
Sbjct: 124 LKIRIKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAQIYAGRHLRPYVSTLTAELE 182

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 183 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 238


>gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1]
 gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 420

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVI----------VGQSSDPVRSE 51
           K+  + R  + L D+   +  +V  + AGL V  A   I            +S  P   E
Sbjct: 259 KNQARVRERQLLFDYSEVVSKLVVYMGAGLTVRGAWERITAGYKDGVKQGKRSVRPAYEE 318

Query: 52  FRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGG-NLSEALA-NLSRIL 109
             +       GLS  ++ S   R   +Q     S ++    + G   L  AL   +    
Sbjct: 319 MVKTAAQLGSGLSEGKAYSEFGRRCGVQVYIKLSALLEQSQKNGSRQLRPALELEMVSAF 378

Query: 110 RDRKNMKAKV 119
             RKN+  K+
Sbjct: 379 EQRKNLAKKL 388


>gi|146304853|ref|YP_001192169.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348]
 gi|145703103|gb|ABP96245.1| hypothetical protein Msed_2105 [Metallosphaera sedula DSM 5348]
          Length = 527

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 14/176 (7%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ---SSDPVRSEFRRVIET 58
            +L+ KR    L DFP  L  I    + G  +  ++  I         P    F  V + 
Sbjct: 329 SYLVIKRDESILADFPTILREIGDFTKLGYGIRASIQRINFDELGLHKPTVKFFDNVKKQ 388

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
             +G ++          +  ++V F   ++++  + GG     L  LS ++      + K
Sbjct: 389 IGMGNNI------YFGSIQNEQVKFIVELLNILDRKGGEGVRVLQELSDMIYSITLSRTK 442

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
           +     + + S + I +L   V      TS   ++   +   G + LG +    L+
Sbjct: 443 L-----QRELSTFNILALITPVLFWFSTTSIETISSFSSSTLGLLNLGYSLTLSLL 493


>gi|327479617|gb|AEA82927.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri DSM
           4166]
          Length = 405

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I     +P +R     + +    G S + ++ +  +Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +KAK++           ++       +
Sbjct: 130 DDLYCNLVDSGEQSGALETLLDRVATYKEKTEALKAKIKK---AMNYPIAVLMVAIIVSA 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P +  V  N   G  L   A   M+IG+
Sbjct: 187 ILLIKVVPQFQEVFAN--FGAEL--PAFTLMVIGL 217


>gi|309802084|ref|ZP_07696194.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221285|gb|EFO77587.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 145

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 18/136 (13%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
            P  L+++  ++R G  +  A+ V+              V    + G+   ++       
Sbjct: 13  MPLVLEMLAVAIRRGASIPHALIVVGRIVGGDFGEGLSSVGGALNQGVDWDQA------- 65

Query: 76  MPL-QEVSFFSTVISVQSQLGGNLSEALANLSRIL--RDRKNMKAKVQALSMEAKASAWI 132
            P   +++    V +     G +    L      L   +R  ++     LS        I
Sbjct: 66  WPSGDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLS--------I 117

Query: 133 IGSLPFCVSTLVYFTS 148
              LP  +  L  F +
Sbjct: 118 RLLLPTGLCFLPAFIA 133


>gi|296278289|pdb|2WHN|A Chain A, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis
           Protein
 gi|296278290|pdb|2WHN|B Chain B, N-Terminal Domain From The Pilc Type Iv Pilus Biogenesis
           Protein
          Length = 116

 Score = 36.2 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AGL +  A+A++  Q+ +   R   ++V      G++ SE++S+          
Sbjct: 22  LATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHKI------F 75

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           S     +    +  G L   L  L+  L     ++ K+++
Sbjct: 76  SRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRS 115


>gi|242238116|ref|YP_002986297.1| type IV pilin biogenesis protein [Dickeya dadantii Ech703]
 gi|242130173|gb|ACS84475.1| type II secretion system protein [Dickeya dadantii Ech703]
          Length = 400

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
           L  I   ++AGLP+ DA+A+I         R     +      G + S++I       P 
Sbjct: 65  LRQIASLLQAGLPLPDALALIGEHHEKAGWRCLLSDIRHQILQGRAFSDAIGDYPDIFPA 124

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLP 137
              S  +          G L+  L      L   +  + ++ +  M+A +   ++I +  
Sbjct: 125 ICGSLLAV---------GELTGKLDECCARLAVYQETQQQLASNVMKAIRYPVFVIVAGM 175

Query: 138 FCVSTLVYFTSPGY 151
                +     P +
Sbjct: 176 LVGLLMTALVLPEF 189


>gi|237756012|ref|ZP_04584595.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691828|gb|EEP60853.1| single-stranded-DNA-specific exonuclease RecJ [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 574

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 137 PFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           P  +S  +   +P + +  + +P    L  V  AF LI   ++R ++N D+
Sbjct: 181 PPFLSEKINIINPKFYSDKLINPLFKHLATVGIAFYLIA--IIRRLLNIDI 229


>gi|163857178|ref|YP_001631476.1| general secretion pathway protein F [Bordetella petrii DSM 12804]
 gi|163260906|emb|CAP43208.1| general secretion pathway protein F [Bordetella petrii]
          Length = 400

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + A LP+  A+   + Q+    V      V +    G  L+++++        ++ 
Sbjct: 70  LASLLAARLPLDAALNATLEQAESRHVAGALAGVRDEVRAGYRLADALA-----TRPRDF 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G+L++ +  L+  + +R  ++ KV  
Sbjct: 125 PEIYRALVAAGEESGDLAQVMEKLAGYIEERNALRGKVMT 164


>gi|297619916|ref|YP_003708021.1| Type II secretion system F domain-containing protein [Methanococcus
           voltae A3]
 gi|297378893|gb|ADI37048.1| Type II secretion system F domain protein [Methanococcus voltae A3]
          Length = 354

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLG-LSLSES 68
           +        L  I+  + +G  V +++  I       +   EFR +I+  + G  S   +
Sbjct: 179 EIKIQILMTLLHIISMLNSGASVQESIKNIADNPEYGIPSYEFRNIIKDINNGGYSFEGA 238

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
           + R      +  +    + + + S  GG     L NL + +
Sbjct: 239 LERARTRTKVNLMKELYSQLIISSSKGGT-QLLLENLYKDI 278


>gi|91200636|emb|CAJ73686.1| similar to general secretory system type II protein, membrane
           component [Candidatus Kuenenia stuttgartiensis]
          Length = 417

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
             K    F        D       AGLP+  ++ ++  Q     ++    +VIE    G 
Sbjct: 75  KSKHLTLFTRQLSTLQD-------AGLPIIRSLQILAAQLKKGMLKKTVLKVIENIEGGS 127

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           + S +++R  R         +  ++    ++ G+L   L  L+     R+ M+  ++ + 
Sbjct: 128 TFSGALARHPRVFD----KLYVNIVK-AGEISGSLDIILRRLADF---REKMERLIRKII 179

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
                 + ++      +  L+ F  P +  + 
Sbjct: 180 TAMIYPSVVVVVAAAILIGLMIFVVPNFAKIF 211


>gi|300088313|ref|YP_003758835.1| type II secretion system F domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528046|gb|ADJ26514.1| Type II secretion system F domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 401

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G  +  A+ ++  Q+++   R+    V      G SLS ++S+  +       
Sbjct: 72  LALLLESGTDIVTALELLQEQTTNKTFRTTLGHVANDIRGGSSLSGAMSKHPKVFS---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  V+S   + GGNL   L N++  L+     + K+++        A +   +   + 
Sbjct: 128 PLFHRVLS-AGEQGGNLEVVLRNMADFLQRMNETRKKIKSALTYPIVVAVVAVIVVAVLM 186

Query: 142 TLVYFTSPGYMNVL 155
             V  T       L
Sbjct: 187 IFVLPTFTDLYRQL 200


>gi|261402229|ref|YP_003246453.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
 gi|261369222|gb|ACX71971.1| Type II secretion system F domain protein [Methanocaldococcus
           vulcanius M7]
          Length = 559

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G SL+E+   + +  P  E + F   ++     G  L E L     I+ D      K   
Sbjct: 126 GRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLMKEQDIVMDDYAAFYKRML 185

Query: 122 LSM----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
            S+    E   SA    +     S LV F  P     +       + L    A  ++ ++
Sbjct: 186 YSLDLYKELYVSAMTSVAFFLAFSILVPFLLPFNFVFMAT-----IALFAFFAIEILIVI 240

Query: 178 VMRLMINFD 186
           V+R  + FD
Sbjct: 241 VIRNRLPFD 249


>gi|289578260|ref|YP_003476887.1| type II secretion system F domain protein [Thermoanaerobacter
           italicus Ab9]
 gi|289527973|gb|ADD02325.1| Type II secretion system F domain protein [Thermoanaerobacter
           italicus Ab9]
          Length = 402

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+P+  A+A +  Q  +  +++  R V E    G SLS+++ +     P
Sbjct: 68  FCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSLSDAMKKQGDVFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +   +          ++ G L + +  ++        +  KV++        +++   + 
Sbjct: 128 VLLYNMVEVG-----EVSGTLDKVMNEMADHYEKENELNQKVKSALTYPVIVSFVAVLVV 182

Query: 138 FCVSTLVYFTSPGYM 152
             + T V        
Sbjct: 183 IFLLTNVLPIFVDLF 197



 Score = 34.3 bits (78), Expect = 8.2,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 15/136 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+  A+ V+     + + SE  R+  E    GL LSE + +M  + P    
Sbjct: 275 LGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP---- 330

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                +ISV  +  G+L   L   +           +V   +  ++ +  +   +   ++
Sbjct: 331 -MVIQMISV-GESSGSLDSILNKAADF------YDGEVD--TAVSQMTTLLEPLIIVMLA 380

Query: 142 TLVYFTSPGYMNVLIN 157
           T+V F     +  L  
Sbjct: 381 TVVGFIVVSIIMPLFQ 396


>gi|308047938|ref|YP_003911504.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799]
 gi|307630128|gb|ADN74430.1| general secretion pathway protein F [Ferrimonas balearica DSM 9799]
          Length = 407

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 19  ALDIIVRSVRA----GLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMV 73
           AL +I R +      GLP+ + +  +  QS  P ++S    V      G  L+ES++   
Sbjct: 70  ALALITRQLSTLVAGGLPLEECIKAVAEQSEQPRLKSMLMAVRAKVVEGYGLAESMAEYP 129

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWI 132
           +     E+      +    +  G+L   L  L+     R+ + AK+ QAL      +   
Sbjct: 130 QVFD--ELY---VAMVASGEKSGHLEVVLERLADYTERRQELNAKLTQALVYPIILTVVA 184

Query: 133 IGSLPFCVSTLV 144
           I  + F ++++V
Sbjct: 185 ISVVVFLLTSVV 196


>gi|251772571|gb|EES53136.1| putative general secretion pathway protein F [Leptospirillum
           ferrodiazotrophum]
          Length = 407

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+ DA+  ++ Q  D P+     RV +    G  LS ++  +        +
Sbjct: 79  MAILVGAGVPIVDALGAVLDQGPDTPMARVASRVRDLVKEGRPLSAAMGEIPAVFSGIYL 138

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           +          +  G L   L  L+ ++  +   + KV
Sbjct: 139 NMV-----RAGEESGTLEIMLDRLADLMEKQVGTRRKV 171


>gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7]
 gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 634

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 53  RRVIETQH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRD 111
           + +++  + LG S+ ++I    + +P +  +          + G  + E + +  + +  
Sbjct: 178 KYIVKRINFLGESVEKAIDESTKIVPSKLYNDLMVTYITAIRTGAPVFETMQSKIKDILK 237

Query: 112 RKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAF 171
              ++A   A ++      ++       +S  +          L   P G +        
Sbjct: 238 NMELQASKAADNLSGVGEGYVTWLASGFISFFLILILEAVFPQLHVLPIGILGAFAVLGI 297

Query: 172 MLIGIMVMR 180
            ++ I+ + 
Sbjct: 298 PIVNILFVW 306



 Score = 33.9 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  I    RAGL     +  +        +++  RRV    +LG+ + ++  +    + 
Sbjct: 415 FLRAIGEGSRAGLSPEAVIKNLKDSKELGKLQNILRRVYAYINLGIPIKDAFRKASDIII 474

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
                   T ++   ++G    E++  L+  L  +  ++ +
Sbjct: 475 DFSTKIAFTSLADMIEIGSLTPESVETLADQLDAQIRIRRE 515


>gi|289209345|ref|YP_003461411.1| type II secretion system F domain protein [Thioalkalivibrio sp.
           K90mix]
 gi|288944976|gb|ADC72675.1| Type II secretion system F domain protein [Thioalkalivibrio sp.
           K90mix]
          Length = 403

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L  +   +++G+P+  A  ++   +  P +R    ++      G + + ++++  +Y  
Sbjct: 69  FLRQMTTMLQSGVPLVQAFEIVGRGNEKPAMRDLVLKLKADVEGGETFAAALAKQPKY-- 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                     +    +  G L   L  ++      + +KAK++ 
Sbjct: 127 ---FDDLVVNLVEAGEQAGTLETLLDKVATYKEKTEALKAKIRK 167


>gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 250

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 60/152 (39%), Gaps = 6/152 (3%)

Query: 1   MKHLIKKRTAKFL--DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +K  I K    FL  ++ P  L+ +++ ++ G+PV   +  I         +     +  
Sbjct: 91  IKDPIDKYKESFLKDNELPAVLETLIQGLQIGMPVYSILLYISNNKKGNTANLINLCVTK 150

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRIL-RDRKNMKA 117
            + G+ +++++  +            + +I    +   NL + L  L + +  +R N+K 
Sbjct: 151 VNSGMDINKALREVAEKSLNDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKT 210

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           +    + +   + +    + + +  ++    P
Sbjct: 211 E---HADKLDNALFFPMLIGYFIPLIIMILVP 239


>gi|146281442|ref|YP_001171595.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501]
 gi|145569647|gb|ABP78753.1| type 4 pilus biogenesis protein PilC [Pseudomonas stutzeri A1501]
          Length = 405

 Score = 36.2 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I     +P +R     + +    G S + ++ +  +Y      
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  ++      + +KAK++           ++       +
Sbjct: 130 DDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKK---AMNYPIAVVLVAIIVSA 186

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+    P +  V  N   G  L   A   M+IG+
Sbjct: 187 ILLIKVVPQFQEVFAN--FGAEL--PAFTLMVIGL 217


>gi|291613153|ref|YP_003523310.1| type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583265|gb|ADE10923.1| Type II secretion system F domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 400

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           VRAG+P+ + +  +     +   R     ++E+   G  LS++++              +
Sbjct: 72  VRAGVPLLECLGDLRDTMEEATFREIIASMVESIESGKKLSQAMAEHPN-----AFDKIT 126

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             ++   +  G L E  A+L+  L+ +  M ++ + + +       ++ ++ F +   +
Sbjct: 127 VSLTRAGEDSGRLVEVFAHLTESLKWQDEMASQTKTMMIYPAFVGTVVLAITFFLMIYL 185


>gi|163751667|ref|ZP_02158887.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99]
 gi|161328493|gb|EDP99648.1| type IV pilus biogenesis protein PilC [Shewanella benthica KT99]
          Length = 423

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+++         Q  
Sbjct: 93  IATMLSAGVPLVTTIEMLGRSHEKAKMRELLGTIVNDVQAGIPLSDAL-----RPHRQYF 147

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G+L      ++      + +K+K++ 
Sbjct: 148 DDLYVDLVAAGEHSGSLDAVFDRVATYREKAEALKSKIKK 187


>gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
 gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
          Length = 185

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 15 DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
                D+   ++R+GLPV  A+  ++  +         +V +   LG   + +
Sbjct: 45 ALAETWDLFAAALRSGLPVPSALHAVLPGTPPGPAERLGQVRDLLALGADPATA 98


>gi|224826461|ref|ZP_03699563.1| type II secretion system protein [Lutiella nitroferrum 2002]
 gi|224601562|gb|EEG07743.1| type II secretion system protein [Lutiella nitroferrum 2002]
          Length = 396

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 15/142 (10%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
               +        ++   +  G PV  A+ ++ G     +R +  +       G S+S +
Sbjct: 256 QRMRIYQLARFYRMLGMLLTGGTPVVQALGMVSGLLQASLREQLLQAARDIREGRSISLA 315

Query: 69  ISRMVRYMPLQEVSFFSTVISVQS----QLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           +S           +  +T ++++     +  G +   +  ++    +      +      
Sbjct: 316 MSS----------NGLTTSVALRMLRVGERTGQMGGMMERIASFYEEEMAQAVERFTRLF 365

Query: 125 EAKASAWIIGSLPFCVSTLVYF 146
           E    A  IG +   V  L+Y 
Sbjct: 366 EPALMA-FIGLVIGGVVILMYL 386


>gi|167041769|gb|ABZ06512.1| putative bacterial type II secretion system protein F domain
           protein [uncultured marine microorganism HF4000_010L19]
          Length = 410

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              +RAGLPV + + +++ Q+  P     +++I +    L    ++S+     P +    
Sbjct: 78  ATMLRAGLPVLNTLNMLIEQTKAP---GMKKIITSIRKDLESGNALSKCFEKHP-KVFDT 133

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
               +    +  G L   L  +   L  R+ +K++++           ++         +
Sbjct: 134 VVVNLIKAGEASGKLDTFLQKIVISLEKREKIKSQIK---SALFYPGVLLSVAIIVTIFM 190

Query: 144 VYFTSPGY 151
           +    P +
Sbjct: 191 LMKVVPVF 198


>gi|42523100|ref|NP_968480.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
           HD100]
 gi|39575305|emb|CAE79473.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
           HD100]
          Length = 405

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++A +P+ DA+  +  Q  +P +           + G +L +++ +          
Sbjct: 74  LATLIKANIPLVDALTAVSEQVENPTLAEALADCKNMVNEGSTLHKAMLKYPNV-----F 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
           +     +    ++ G+L   L  L+     + +++AKV  A++          G + F  
Sbjct: 129 TTIYVSMVEAGEMSGSLDVILMRLAEFTEAQADLRAKVSSAMTYPVIMLVVTFGLMGFLF 188

Query: 141 STLV 144
             L+
Sbjct: 189 IFLI 192


>gi|260596530|ref|YP_003209101.1| type IV pilin biogenesis protein [Cronobacter turicensis z3032]
 gi|260215707|emb|CBA28060.1| Protein transport protein hofC [Cronobacter turicensis z3032]
          Length = 406

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A+  +   ++AG+ ++  +A++  Q      R+ F ++ +    G++ SE++ +     P
Sbjct: 69  AVRQLAALLQAGVSLTQGLAMLSSQHPVAQWRALFAQLAKQLGRGVAFSETLRQWPDIFP 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSL 136
                     + +     G L+  L    + L  ++  + K++   ++A +  A+I    
Sbjct: 129 ---------PLYISLMRTGELTGKLDMCCQQLAQQQEDQQKLRKQVIKALRYPAFIFTVA 179

Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR---GHMLLGVAAAFMLIGIMVM 179
                 +  F  P +  +    N P       ++ ++   M   +  +
Sbjct: 180 LLLTLGMTCFVLPQFTAIYRSFNTPLPLVTRAVIALSEGLMQYAVWWL 227



 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 29  AGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
           AG+P+  +++ +    + P+ R   RRV E    GL L  ++ +              T 
Sbjct: 282 AGIPLLQSLSSVEETLASPLWRQAVRRVKEGIASGLPLWRALEQ----------ETVFTA 331

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           + +Q    G  + +L  +   L      +   +A ++ A     ++  +   V TLV   
Sbjct: 332 LCIQLVRTGEETGSLDLMLEKLAGWHLAQTSERAQTLAATLEPLMMMVIGLIVGTLVVAM 391


>gi|297544540|ref|YP_003676842.1| Type II secretion system F domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842315|gb|ADH60831.1| Type II secretion system F domain protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 403

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   + AG+P+  A+A +  Q  +  +++  R V E    G SLS+++ +     P
Sbjct: 68  FCRQFATLINAGIPIVTALATMKEQVENKRLKNALREVYEEVQKGKSLSDAMKKQGDVFP 127

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +   +          ++ G L + +  ++        +  KV++        +++   + 
Sbjct: 128 VLLYNMVEVG-----EVSGTLDKVMNEMADHYEKENELNQKVKSALTYPVIVSFVAVLVV 182

Query: 138 FCVSTLVYFTSPGYM 152
             + T V        
Sbjct: 183 IFLLTNVLPIFVDLF 197



 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+  A+ V+     + + SE  R+  E    GL LSE + +M  + P    
Sbjct: 275 LGTLISAGIPLIAAMEVVEKVVGNTIVSEGLRKAQEDIKKGLPLSEPLKKMGIFPP---- 330

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                +ISV  +  G+L   L   +           +V   +  ++ +  +   +   ++
Sbjct: 331 -MVIQMISV-GESSGSLDSILNKAADF------YDGEVD--TAVSQMTTLLEPLIIVMLA 380

Query: 142 TLVYFTSPGYMNVLIN 157
            +V F     +  L  
Sbjct: 381 IVVGFIVVSIIMPLFE 396


>gi|13541845|ref|NP_111533.1| hypothetical protein TVN1014 [Thermoplasma volcanium GSS1]
 gi|14325281|dbj|BAB60185.1| TVG1068999 [Thermoplasma volcanium GSS1]
          Length = 245

 Score = 36.2 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 3/140 (2%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +++   K     P+ L  +      G+ + + + +I+ +   P+  + R        G +
Sbjct: 45  LRRNEEKRNMMVPSFLRDLSSFSSYGMSMYNILHLILSEDLGPLNEDVRNARAILDNGNT 104

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           + E  + +      +++   + V+    + G      L  LS  + +R + + K    + 
Sbjct: 105 IEEVSAYLRSR-NSRDLDIVAEVMKNADRAG-RPGTTLQFLSTYMNERMSQR-KNATQTA 161

Query: 125 EAKASAWIIGSLPFCVSTLV 144
           E      I   + F +  +V
Sbjct: 162 ENYVGLIIASFMIFLLVMIV 181


>gi|90416867|ref|ZP_01224796.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2207]
 gi|90331214|gb|EAS46458.1| general secretion pathway protein F [marine gamma proteobacterium
           HTCC2207]
          Length = 402

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 7   KRTAKFLD-DFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLS 64
           +R A+  + D    L      + +GLP+ DA+ + + Q+  +  R   +        G S
Sbjct: 56  RREARVNNFDLSLLLQQQAILIESGLPLEDALRMTIEQAETEKQRRMLQSWRSEIIEGRS 115

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
            S+++    R  P +        ISV  + G +L + L  ++  L      +  +   S 
Sbjct: 116 FSDAL----RRSPYKIPDSIVAGISVGEESG-HLHKVLMRIAEDLESSAENRKTI---SR 167

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
                A +I +    V+ ++ +  P    + ++  R   L+     
Sbjct: 168 AMIYPATLISTSIIVVAIMMVWVVPKITAIFMSSNRELPLITRIIV 213


>gi|32470735|ref|NP_863728.1| hypothetical protein RB127 [Rhodopirellula baltica SH 1]
 gi|32442880|emb|CAD71399.1| hypothetical protein-transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 350

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     L+ +     +G  +   +A +   +   +      V      G S S +++ + 
Sbjct: 21  ESLAMLLEEVSAMAASGRSLVSGLAGLNDVALGRLGRAAEFVRARVKHGQSPSVAMASLS 80

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         + + ++ G   +  +   +R++R R++ + +V   ++    +  + 
Sbjct: 81  LPYQTP----IRIAMQIMAETGSTAA--IHETARLIRQREDQRRQVWLAAINPILNMLVA 134

Query: 134 GSLPFCVSTLVYFT 147
             + F V   +  +
Sbjct: 135 AVVAFFVLPWILIS 148


>gi|114564936|ref|YP_752450.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
 gi|114336229|gb|ABI73611.1| type II secretion system protein [Shewanella frigidimarina NCIMB
           400]
          Length = 419

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        VR     ++     G+ LS+++    RY     V
Sbjct: 89  IATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRRYFDDLYV 148

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +       +  G+L      ++      + +K+K++ 
Sbjct: 149 DLVA-----AGEHSGSLDAVFDRIATYREKAEQLKSKIKK 183


>gi|4680725|gb|AAA91205.2| VvpC [Vibrio vulnificus]
          Length = 409

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  ++ ++        ++S    V +    G  LS+++           V
Sbjct: 77  LATMLTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTLLSKALRSASPQFDGIYV 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL +    L+      + ++AKV          A I   +   V+
Sbjct: 137 DLVATG-----EQSGNLDQVFERLAFYREKNEQLRAKV--------IKALIYSCMVVLVA 183

Query: 142 TLVYFT 147
             V + 
Sbjct: 184 LGVSYL 189


>gi|88858666|ref|ZP_01133307.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas tunicata D2]
 gi|88818892|gb|EAR28706.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshG (pilus type IV) [Pseudoalteromonas tunicata D2]
          Length = 411

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   ++AG+P+  A+  +    +          + +    G +LS +++   +   
Sbjct: 75  FCRQMYSLLKAGIPIIRAIVGLAETTTHKRFAEALTDLTKQLEQGRNLSSAMASHKKI-- 132

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               +     I V  +  G L +A   L+      +  + +++      +   ++I +L 
Sbjct: 133 ---FNRLMVSIVVVGESTGRLEDAFLQLATYFEREQETRKRIK---SAMRYPTFVILALV 186

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +  L  F  P + N+ 
Sbjct: 187 AAMFILNIFVIPTFANMF 204


>gi|87309116|ref|ZP_01091253.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
           3645]
 gi|87288107|gb|EAQ80004.1| type IV fimbrial assembly protein PilC [Blastopirellula marina DSM
           3645]
          Length = 466

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
                    +     AGLP+  ++ ++  QS    +++    V E    G  LSE++S+ 
Sbjct: 71  RQLTTFTRQLAILQNAGLPILRSLKILEKQSKPGRLKNSLMDVCEDIESGAGLSEAMSKC 130

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
            +         +  +I    + GG L   L  L+  +   +++K KV+         A +
Sbjct: 131 PKCFN----RLYVNMIK-AGEAGGALEVILLRLADFMERDEDLKRKVKG---AMIYPAVV 182

Query: 133 IGSLPFCVSTLVYFTSPGY 151
           I      ++ ++    P +
Sbjct: 183 ITVAVGILTFIMIKIVPVF 201


>gi|296123622|ref|YP_003631400.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
 gi|296015962|gb|ADG69201.1| type II secretion system protein [Planctomyces limnophilus DSM
           3776]
          Length = 362

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +RAG+P+      +   SS  +     R+ E    G +L  +I+         E  
Sbjct: 21  LALLIRAGIPLEIGFQQLGRGSSSDLARLAERIGERLQQGQALDLAIAS----ENTPEAR 76

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
            ++T++ +  + G  L E L +++ +      ++ +   +   A     ++      +  
Sbjct: 77  LYATIVQLGIRSG-RLPEMLESMAHLGDQMSAVREEFHRV---AIYPTIVVVLTYLLICG 132

Query: 143 LVYFTSPGYMNVL 155
           L  +  P ++  L
Sbjct: 133 LAIWFIPRWLLTL 145


>gi|238797693|ref|ZP_04641188.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
 gi|238718445|gb|EEQ10266.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
          Length = 365

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 23 IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
          +   ++AGLP+ +++ ++  +    P R   + + +    G SLSE+++   R  P
Sbjct: 34 LATLLQAGLPLVNSLQLLAKEMDALPWRCLLQEINQQVSQGQSLSEAMAHYPRIFP 89


>gi|295837423|ref|ZP_06824356.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
 gi|197696060|gb|EDY42993.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
          Length = 304

 Score = 36.2 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 14/43 (32%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSES 68
            V AG    +A   + G    PV    R V     LG     +
Sbjct: 174 CVAAGAGPVEAAEAVGGSLDGPVGERLRHVAAEIRLGGEPERA 216


>gi|325981148|ref|YP_004293550.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
 gi|325530667|gb|ADZ25388.1| Type II secretion system F domain [Nitrosomonas sp. AL212]
          Length = 407

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 13/177 (7%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHL 61
            +I+K    F              +++G+P+  A  +I    S+  +      +      
Sbjct: 63  RIIEKDITLFTRQL-------ATMMKSGVPLLQAFDIIGKGHSNRALSKLLMDIKADVET 115

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +L+++  +     PL         +    +  G L   L  L+      + +K K+++
Sbjct: 116 GSNLTDAFRK----YPLY-FDALYCNLVGAGEAAGILDTILDRLATYKEKIQAIKGKIKS 170

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
                 +   +   +   +   V             D     L  +A +   +    
Sbjct: 171 ALFYPISIIVVAFVITAIIMIFVIPAFKDLFEGFGADLPAPTLFVMAISDFFVAYWW 227


>gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 431

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 9/128 (7%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVR------SEFRRVIETQHLGLSLSES 68
           P  L+  V  + AG+ V  A   I    +    +        E    +     G S  E 
Sbjct: 286 PEILNKFVLFLGAGMTVKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKEC 345

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127
                +         F  ++S   + G   L++ L   +    + +   AK     +  K
Sbjct: 346 YEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTK 405

Query: 128 ASAWIIGS 135
             A +   
Sbjct: 406 LLAPMFFM 413


>gi|134096982|ref|YP_001102643.1| type II secretion system protein [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006273|ref|ZP_06564246.1| type II secretion system protein [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133909605|emb|CAL99717.1| type II secretion system protein [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 143

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 21 DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
          D++   +RAGLPV   +  +  +           V     LG     +    +R+   +E
Sbjct: 7  DLLAAGMRAGLPVPVILRAVAAEFDGAPAGVLDEVARLLALGADAVAAWEPALRHPDTEE 66

Query: 81 V 81
          +
Sbjct: 67 L 67


>gi|170723339|ref|YP_001751027.1| general secretion pathway protein F [Pseudomonas putida W619]
 gi|169761342|gb|ACA74658.1| general secretion pathway protein F [Pseudomonas putida W619]
          Length = 400

 Score = 36.2 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 9/172 (5%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           +R              +     AG+P+ DA+A +  Q   P +      +  +   GL L
Sbjct: 53  RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHGVLVALRGSLAEGLGL 112

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           + S++           +     +    +  G L++ L  L+  L   +  + K +   + 
Sbjct: 113 ARSLA----RQGAP-FTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALI- 166

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
                 ++G     V  L+ F  P       +  +   L+      +  G++
Sbjct: 167 --YPCVLMGVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLV 216


>gi|220913901|ref|YP_002489210.1| hypothetical protein Achl_3160 [Arthrobacter chlorophenolicus A6]
 gi|219860779|gb|ACL41121.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 271

 Score = 35.8 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%)

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
            +    +    G  L++ L   +  L    +  A  Q      KA+  ++  LP     L
Sbjct: 163 LAACFDIAEASGCPLADVLTRFAAQLEVESDADAARQTALAGPKATVTLLTWLPLMGLGL 222

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
                   + +L+  P G   L   AA  + G +    ++
Sbjct: 223 GMALGVDPLAMLLGTPLGLAALLGGAALTVAGRLWSARLV 262


>gi|118579254|ref|YP_900504.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
 gi|118501964|gb|ABK98446.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
          Length = 414

 Score = 35.8 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 24  VRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              +RAG  +  A+       +   +R   +++ +    G S S +++   +       +
Sbjct: 86  AMMLRAGYTLVTALDASSEMTAKLRLRRTIKKMCDEIRKGGSFSGTLAGEKKI-----FT 140

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
              + +    +  GNL + L  L+  +   K++K +   L        +++      V  
Sbjct: 141 PMVSNLIASGEKSGNLDDILDRLADSIERSKDIKRQ---LVAAMFYPLFVLLVSIGVVIF 197

Query: 143 LVYFTSPGYMNVL 155
           LV    P +   L
Sbjct: 198 LVLGVIPRFATFL 210


>gi|89093855|ref|ZP_01166801.1| general secretion pathway protein F [Oceanospirillum sp. MED92]
 gi|89081985|gb|EAR61211.1| general secretion pathway protein F [Oceanospirillum sp. MED92]
          Length = 407

 Score = 35.8 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    +AG+P++ A+  +     +P+  E    +      G  LS ++++  +       
Sbjct: 77  MYSLTKAGVPITRAMRGLANTVQNPLLVETLSDLANDLEKGHELSSALAKHPKVFS---- 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + ++I V  +  G L +A   ++  L   +    +V+  +   +   +++ ++   ++
Sbjct: 133 ELYVSMIHV-GENTGQLDDAFRQMASYLELERQTVKQVKQAT---RYPMFVMIAIAAAIT 188

Query: 142 TLVYFTSPGYMNVL 155
            +     P + N+ 
Sbjct: 189 LINIVVIPQFKNIF 202


>gi|15669091|ref|NP_247896.1| flagellar assembly protein J [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024920|sp|Q58311|FLAJ_METJA RecName: Full=Flagella accessory protein J
 gi|1591576|gb|AAB98904.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 562

 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 42  GQSSDPVRSEFRRVIETQ-HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100
            +    +  E  ++       G SL+E+   + +  P  E + F   ++     G  L E
Sbjct: 108 REELGELAKESEKLYVLTDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKE 167

Query: 101 ALANLSRILRDRKNMKAKVQALSM----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLI 156
            L     I+ D      K    S+    E   SA    +     S LV F  P     + 
Sbjct: 168 FLIKEQDIVMDDYAAFYKRMLYSLDMYKELYVSAMTSIAFFLAFSILVPFLLPYNFVFMA 227

Query: 157 NDPRGHMLLGVAAAFMLIGIMVMRLMINFD 186
                 + L    A  L+ ++V+R  + FD
Sbjct: 228 T-----IALFAFFAVELLIVVVIRNRLPFD 252


>gi|269955134|ref|YP_003324923.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303815|gb|ACZ29365.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 183

 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L+++  ++RAG  V  A+  +         +   RV     LG + + +   +   + +
Sbjct: 48  VLELLGAALRAGAGVPRAIETVAQAVGGADGAALARVASALRLGAAWTVAWEGVPPRLDV 107

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRIL 109
                 +  +      G    EAL      L
Sbjct: 108 -----VARALRPAWDEGAAPGEALTAAGEEL 133


>gi|194468354|ref|ZP_03074340.1| type II secretion system protein [Lactobacillus reuteri 100-23]
 gi|194453207|gb|EDX42105.1| type II secretion system protein [Lactobacillus reuteri 100-23]
          Length = 344

 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
               N   ++   +  G  + +A+  I       +      V +    G S ++S+    
Sbjct: 20  QQQANFFLLLADLLSVGFSIREALGFI-KTVKPKLGPWVVSVDKRMQKGASFAQSLQ--- 75

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
              P  +   F  ++   ++  GNL++ L+ + +IL  R++ + K+  L    +    ++
Sbjct: 76  ---PEVKADLFYQLLL--AEKHGNLTKTLSEVGKILAAREHQRKKLFNLL---QYPLILL 127

Query: 134 GSLPFCVSTLVYFTSPG 150
           G L   +  L+ F  P 
Sbjct: 128 GMLGVVICGLILFVFPE 144


>gi|152976636|ref|YP_001376153.1| type II secretion system protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025388|gb|ABS23158.1| type II secretion system protein [Bacillus cytotoxicus NVH 391-98]
          Length = 344

 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +  G  +  A+  +  Q S   R + + + E    G SL ++  +++ +  +    F++ 
Sbjct: 23  LEKGYSLLQALEFLQFQLSSQKRLQLQHMTEELKNGQSLHDAFHQLMFHPDILSYLFYA- 81

Query: 87  VISVQSQLGGNLSEALANLSRIL-RDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
                 Q  G++S AL   S +L R  K+ K  ++ L      S ++IG L      L+
Sbjct: 82  ------QKHGDISFALRQGSLLLQRKNKHQKEMIKVLRYPIFLSVFLIGILAVFHFILL 134


>gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 401

 Score = 35.8 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F   ++       AG+P+  A+ ++  Q+ +P +R +   V      G SL E++ 
Sbjct: 67  FSRQFATMIN-------AGVPILQALQIMCEQTENPKLRRKLYAVRNDIEGGSSLYEALK 119

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           +              + +    + GG L + L  L+  + 
Sbjct: 120 KHPDI-----FDALYSNMVNAGETGGILDQVLIRLAEYIE 154


>gi|221069114|ref|ZP_03545219.1| general secretion pathway protein F [Comamonas testosteroni KF-1]
 gi|220714137|gb|EED69505.1| general secretion pathway protein F [Comamonas testosteroni KF-1]
          Length = 407

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G S + ++ +  R     E S     +    +  G+L   L NL+  L  R+ +++
Sbjct: 113 EVNAGSSFARALEQHPR-----EFSDIFCAVIGAGESSGSLGPVLENLADDLEARQALQS 167

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           K+   S+     A +       V  LV +  P    V     R    L V   
Sbjct: 168 KLIGASL---YPAIVTLVAIVIVVFLVSYVVPQVAGVFAGTKRALPFLTVVML 217


>gi|311030866|ref|ZP_07708956.1| comG operon protein 2 [Bacillus sp. m3-13]
          Length = 326

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G  + +A+ ++        +      IE    G S+ + +  +     +  + FFS    
Sbjct: 8   GYSLLEALELMSIHFEAEKKRSLLEAIEELKKGYSVHQVLESLHFNQDILSLLFFS---- 63

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
              Q  GNL +A  +   +L  ++  + K+ ++    +    ++  +   +  +     P
Sbjct: 64  ---QKHGNLGQAFRSGGALLERKRFYRDKIFSIL---RYPIMLLFLVTIMLVFVQLVLLP 117

Query: 150 GY----------MNVLINDPRGHML-LGVAAAFMLIGIMVMRLMINF 185
            +          ++ +I+     ++ + +   + ++GI    L    
Sbjct: 118 QFHLLFSQMNISLSPIISVFFFLVVQIPILLLWCVLGIFAAYLFYKI 164


>gi|89897405|ref|YP_520892.1| hypothetical protein DSY4659 [Desulfitobacterium hafniense Y51]
 gi|89336853|dbj|BAE86448.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 316

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 50/151 (33%), Gaps = 2/151 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           +K++  +   + P  +  I ++++A   V   +      +      E   +        S
Sbjct: 164 LKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFARELDVLTADMRS-SS 222

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              +++R    +    +S     + +    G + +     L+   +  +  + K  A  +
Sbjct: 223 YEAALTRFEARLNSPMLSDVVRGL-IGVLRGDDSTVYFQMLAHDFKALELQRLKSLAQKI 281

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             K   +    L   + T +   +   ++ L
Sbjct: 282 PPKIRIFSFIMLMCFLLTYLAIIAMEILSSL 312


>gi|227540875|ref|ZP_03970924.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183407|gb|EEI64379.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 466

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSLSESISRMVRYMPLQEV 81
            R+   GL +S A   I+   +DP   EF           G++L ++   M      ++V
Sbjct: 194 SRASALGLDISRA--EIIDHLTDPRAEEFAAQFAELRKKKGVTLEQARETM------KDV 245

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           S+F T++    Q  G +S A    +  +R    +   ++     +  S+  + ++
Sbjct: 246 SYFGTMLVHTGQADGMVSGAAHTTAHTIRPSFQI---IKTKPGTSVVSSIFLMAM 297


>gi|227541577|ref|ZP_03971626.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227182545|gb|EEI63517.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 213

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFT 147
           SV    G  L+  L ++   + DR+    K     ++   + A I+ +LP     +    
Sbjct: 114 SVAETYGVPLAGLLESVQATM-DRQLQHDKQTVAQLQGPITTAGILTALPVIGIIMGAAI 172

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               +  L+    G ++L      +  G++    +I
Sbjct: 173 GADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208


>gi|254427307|ref|ZP_05041014.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
 gi|196193476|gb|EDX88435.1| Bacterial type II secretion system protein F domain [Alcanivorax
           sp. DG881]
          Length = 407

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 18/173 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++     +P ++    ++      G + + ++ +     PL   
Sbjct: 77  MATMMKAGVPLVQAFEIVADGLDNPSMKDVVLKIKADVEGGNNFAGALQKH----PLL-F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +K K++      K    +I       +
Sbjct: 132 DDLYCSLVDAGEQSGALETMLDRVALYKEKSEALKQKIKK---AMKYPIAVICVAIIVTA 188

Query: 142 TLVYFTSPGYMNVLINDPRG-------HMLLGVAAAFMLIGIMVMRLMINFDV 187
            L+    P +  +   D  G         ++G++ A      ++M  +I F +
Sbjct: 189 ILLIKVVPTFKELF--DGFGAELPAFTQFVIGLSEALQANFFIIMVSLIVFGI 239


>gi|170721966|ref|YP_001749654.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169759969|gb|ACA73285.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 396

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSL 65
           +R   F          +   + AGLP+ DA+  +  ++     R     ++   + G SL
Sbjct: 53  RRQVAFDLLL--FSQELTTLLHAGLPLIDALESLAEKAPTAATRKVLAALVGQLYEGRSL 110

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
           S+++++  R  P          +   S+  G L +AL       R R ++  +    + 
Sbjct: 111 SQALAQQPRIFPP-----LYVALVQSSERTGALGDALHRYIGY-RQRLDLVRQKLVGAS 163


>gi|171463464|ref|YP_001797577.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193002|gb|ACB43963.1| type II secretion system protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 140

 Score = 35.8 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +R+GL +  ++ ++  Q  +P ++    ++      G SLS+S ++          +   
Sbjct: 2   LRSGLSILPSLEMVRDQVENPTLKETVNQIYIDVESGSSLSQSFTKHPDI-----FNAIY 56

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLV 144
             +    +  G L   L  L   +R    ++  +Q        SA +  ++   V+T+V
Sbjct: 57  INMVKAGESSGRLDIFLDKLVLSIRKTIKIRKSIQ--------SAMLYPAILLIVATVV 107


>gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 289

 Score = 35.8 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 51/152 (33%), Gaps = 2/152 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
            +K++  +   + P  +  I ++++A   V   +      +      E   +        
Sbjct: 136 RLKEKREQIEGELPRFVSTIEQTLKASRDVLAMMENYKKNAGPAFAGELDVLTADMRS-S 194

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    +    +S     + +    G + +     L+   +  +  + K QA  
Sbjct: 195 SYEAALTRFEARLNSPMLSDVVRGL-IGVLRGDDSAVYFQMLAHDFKALELQRLKGQAQK 253

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +  K   +    L   + T +   +   ++ L
Sbjct: 254 IPPKIRIFSFIMLMCFLLTYMAIIAMQILSSL 285


>gi|114561295|ref|YP_748808.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB
           400]
 gi|114332588|gb|ABI69970.1| general secretion pathway protein F [Shewanella frigidimarina NCIMB
           400]
          Length = 410

 Score = 35.8 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ 59
           + +L KKR +  + +       I   V AGLP+ +A+  +  QS  D + S    V    
Sbjct: 59  LANLFKKRIS--VAELALITRQIATLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRV 116

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL++S++                 +    +  G+L   L  L+     R+ +K+K+
Sbjct: 117 VEGYSLADSMAEFPHV-----FDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKL 171

Query: 120 -QALSMEAKASAWIIGSLPFCVSTLV 144
            QA+      +   IG +   ++ +V
Sbjct: 172 TQAMIYPIVLTVVAIGVIAVLLAAVV 197


>gi|309808611|ref|ZP_07702503.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|308168085|gb|EFO70211.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 01V1-a]
          Length = 332

 Score = 35.8 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 20  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 73

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS  I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 74  -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 125

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +   +  +  F      +   +      ++        IG  
Sbjct: 126 MVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFIGCF 167


>gi|227487256|ref|ZP_03917572.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092914|gb|EEI28226.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 213

 Score = 35.8 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 89  SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS-AWIIGSLPFCVSTLVYFT 147
           SV    G  L+  L ++   + DR+    K     ++   + A I+ +LP     +    
Sbjct: 114 SVAETYGIPLAGLLESVQATM-DRQLQHDKQTVAQLQGPITTAGILTALPVIGIIMGAAI 172

Query: 148 SPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
               +  L+    G ++L      +  G++    +I
Sbjct: 173 GADSVTYLLGGGTGGIVLVAGTGCIAAGVLWSARII 208


>gi|330465240|ref|YP_004402983.1| type II secretion system F domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328808211|gb|AEB42383.1| Type II secretion system F domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 252

 Score = 35.8 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 30  GLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVIS 89
           G PV  +V  +      P+  + RRV  T  LG    E+ + +     +      +T   
Sbjct: 128 GAPVERSVIAVADALGGPLADQLRRVGRTLQLGGLPQEAWAHLAE---VPGGQRIATAAV 184

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
             +  G  L+ AL  L+  LR       +V  +   A+ S  ++  LP  +  L  F   
Sbjct: 185 RSASSGAALAGALVRLADDLRA-----DRVTTIEAAARRSG-VLIVLPLGLCFLPAFILA 238

Query: 150 GYMNVL 155
           G + V+
Sbjct: 239 GLVPVI 244


>gi|229182303|ref|ZP_04309578.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W]
 gi|228601159|gb|EEK58705.1| hypothetical protein bcere0005_56120 [Bacillus cereus 172560W]
          Length = 288

 Score = 35.8 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +K+  K+       + P  L  +++ ++      +AV      +   +R     +     
Sbjct: 131 LKNRSKQAIEARKFELPEYLIPMLQLLKT-HTTLEAVKKAEIYAGRHLRPYVSTLTAELE 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
           +     +        +   EV+ F+  +    +   +  ++L  +   ++  + +K +
Sbjct: 190 MYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKT--DKVQSLRIMDAQIKMMRELKHE 245


>gi|226943335|ref|YP_002798408.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ]
 gi|226718262|gb|ACO77433.1| type IV pilus biogenesis protein [Azotobacter vinelandii DJ]
          Length = 405

 Score = 35.8 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  +I      P +R     V +    G   + S+ +  RY      
Sbjct: 75  MATMMKAGVPLLQAFDIISEGFDKPAMRKLVDEVKQEVAAGNGFAASLRKKPRY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +KA+++         A I+ ++     
Sbjct: 130 DNLYCNLVESGEQSGALESLLERIATYKEKTEALKARIKKAMTYPI--AVILVAIAVSAI 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            L+    P + +V  N       L +   
Sbjct: 188 LLIKVV-PQFQSVFANFGAELPALTLLVV 215


>gi|302768707|ref|XP_002967773.1| ATP-binding cassette transporter [Selaginella moellendorffii]
 gi|300164511|gb|EFJ31120.1| ATP-binding cassette transporter [Selaginella moellendorffii]
          Length = 622

 Score = 35.8 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYM-PLQEVS-FFSTVISVQSQLGGNLSEALANLSRIL 109
             R  +    G +L    + + R +  ++E   FF+  +         L+    +L   L
Sbjct: 372 LARTAQALGAGFALGSVFTHLGRNVVGVRERYGFFAFTL------TFLLTSTSESLPMFL 425

Query: 110 RDRKNMKAKVQALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
            +R+  + +    +   + S+++I      LPF     + +T P Y  V +N      + 
Sbjct: 426 AERQIFERETSRGTY--RVSSYVIANTLMFLPFLFVFSLLYTVPAYFLVGLNHSIEAYVF 483

Query: 166 GVAAAFMLI 174
            +   +M++
Sbjct: 484 FLLDVWMVV 492


>gi|399800|sp|P31704|GSPF_ERWCH RecName: Full=General secretion pathway protein F; AltName:
           Full=Pectic enzymes secretion protein outF
 gi|148436|gb|AAA24833.1| secretory component [Erwinia chrysanthemi]
 gi|259984|gb|AAB24180.1| OutF=pectic enzyme secretion protein [Erwinia chrysanthemi,
           Peptide, 404 aa]
          Length = 404

 Score = 35.8 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R+ +   D       +   V A LP+ +A+  +  QS  P + +    V      G SL+
Sbjct: 61  RSHRIASDLALLTRQLATLVAA-LPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           E++                  +    +  G+L   L  L+     R  M++++Q
Sbjct: 120 EAMGNFP-----GSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRHEMRSRIQ 168


>gi|226951870|ref|ZP_03822334.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244]
 gi|294649127|ref|ZP_06726569.1| general secretion pathway protein F [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837410|gb|EEH69793.1| general secretion pathway protein F [Acinetobacter sp. ATCC 27244]
 gi|292825010|gb|EFF83771.1| general secretion pathway protein F [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 401

 Score = 35.8 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V AG+P+ +A+  +  QS    V++    V      G SL++ + +  R     E+
Sbjct: 73  LSVLVAAGIPLEEALRAVSKQSEKSHVQNLLISVRSKVLEGHSLAQGMQQSGR---FPEL 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV- 140
              +       +  G+L   L  LS    +R  M+ K+Q     A     I+  + F + 
Sbjct: 130 YIATVA---AGERSGHLDLILDQLSDYTENRFAMQKKIQG----AMIYPIILMLMSFAIV 182

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA------------AAFMLIGIMVMRLMINF 185
             L+ +  P  +            + VA             A ++IG + + L   F
Sbjct: 183 MGLMTYVVPEIVKTFEQSKEALPWITVALMKASAFIKQTWVAMLIIGFIAVILFTRF 239


>gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 249

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 2/137 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
            ++ P AL++ +  +  G+   + +  IV      VR            G SL ++++  
Sbjct: 103 EEELPAALEVFISGLEVGMNKENIIGYIVRTRKGVVRDLLYEAQVRIDTGSSLKDALTFA 162

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                      F   ++ + +   ++ E L  L   + +R   +   +A +++   S + 
Sbjct: 163 ADKSLNDHFKRFVKAVTGEYESVKDMRENLEELLEEVEERNYNQKIERAGTLD--NSLFF 220

Query: 133 IGSLPFCVSTLVYFTSP 149
              L + V  LV F  P
Sbjct: 221 PIFLGYFVPILVMFALP 237


>gi|58337050|ref|YP_193635.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227903613|ref|ZP_04021418.1| competence protein [Lactobacillus acidophilus ATCC 4796]
 gi|58254367|gb|AAV42604.1| competence protein [Lactobacillus acidophilus NCFM]
 gi|227868500|gb|EEJ75921.1| competence protein [Lactobacillus acidophilus ATCC 4796]
          Length = 334

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 11/148 (7%)

Query: 1   MKHLIKKRTAKF--LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           MK++   +  K    +     LD +  S+  G  +S+++ ++        R    ++   
Sbjct: 2   MKYIGSTKKDKLNGEEQLA-FLDYLKNSLNNGFSLSNSIELMPVLWPKQ-RVLMGKLARR 59

Query: 59  QHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
              G SLSE + ++             T +++  Q  GNL+E L  L+ + R ++    K
Sbjct: 60  MKNGASLSEELIKLGFS------RTMVTQVNLSLQ-QGNLTECLEQLAILSRLKQEQIKK 112

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYF 146
           ++A        A ++  L   + + +  
Sbjct: 113 LRAELSYPLVLAIMMIVLLMFMQSFISM 140


>gi|94984864|ref|YP_604228.1| type II secretion system protein [Deinococcus geothermalis DSM
           11300]
 gi|94555145|gb|ABF45059.1| type II secretion system protein [Deinococcus geothermalis DSM
           11300]
          Length = 406

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSESISRMVRYMPL 78
           +   + AG+P+  A+A++  Q  +     F+ +I++       G  LSE++ +  +    
Sbjct: 75  LATLINAGVPLVQALAILQRQIEN---KTFQNIIKSIRTDVESGTPLSEALVKHPKV--- 128

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
              +     +    +  G L   L  ++        ++ K+++              + +
Sbjct: 129 --FNRLYINLVRAGETSGTLDSILERIAAFQEKELGLRGKLKSALTYPVVVLVFAIGITY 186

Query: 139 CVSTLVYFTSPGYMNVLINDP---RGHMLLGVAAAFMLIGIMVM 179
            + T +     G +  L N P       L+ V+      G++++
Sbjct: 187 FLLTTIVPQFAGILAQL-NAPLPLITRALMAVSDFLQHSGLLIL 229


>gi|307244466|ref|ZP_07526575.1| type II secretion system F domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492159|gb|EFM64203.1| type II secretion system F domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 351

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 11/151 (7%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MK L++K+      +       I    ++G  +      I+  SS  V      V     
Sbjct: 1   MKILLQKKIR--DKELKLICQQIASMEKSGCDLMTIFDTIINTSSKKVSGVMAMVKRNIE 58

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G +++E+             S F   +    ++ GN+      ++        +K K  
Sbjct: 59  RGRTMTEAF------YLTNAFSVFFISMIRAGEVSGNIDFVFEKMTAYYDREYRLKNK-- 110

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGY 151
            L   A     ++     C+  ++ F  P +
Sbjct: 111 -LIAAAIYPMILVFVTLLCLVFMLVFVVPNF 140


>gi|254517129|ref|ZP_05129187.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
 gi|219674634|gb|EED31002.1| general secretion pathway protein F [gamma proteobacterium NOR5-3]
          Length = 401

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGLP+  ++ V++  +S P + +    V+++   G +LS ++            
Sbjct: 71  LAVLLRAGLPLDRSLKVLIEMASLPSMAALLSDVLKSVKDGKALSIALEPYSELFGR--- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G +S  L  L   L   K  +  V          A ++      + 
Sbjct: 128 --FYLSMLRSGEASGEMSAVLDRLVAHLETAKATRDSV---VSALIYPAILLVVAVLSIV 182

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F  P     L ND
Sbjct: 183 VMLAFVVPQ-FETLFND 198


>gi|81428916|ref|YP_395916.1| putative type II secretion/competence system, protein comGB-like
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610558|emb|CAI55609.1| Putative Bacterial type II secretion/competence system, protein
           comGB-like [Lactobacillus sakei subsp. sakei 23K]
          Length = 335

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 28/187 (14%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLS 66
           ++ A+F   + + L ++ R +  G  +  A A +        R    +V +    G SL+
Sbjct: 5   RQQAQF---YADFLQLLGRLLENGFSLQQAFAFLPIVFPKQ-RQWLNQVNQALEKGDSLA 60

Query: 67  ESISRM---VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            S++       Y+   E++          +L GNL + L +L RI   R+  + +++ + 
Sbjct: 61  VSLAHADFPTDYVGQIELT----------ELQGNLGQCLWHLGRIQSIRQKRRREIRGVL 110

Query: 124 M----EAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM-----LLGVAAAFMLI 174
                       +IG L   +   +   +P   +     P   +     LL +    M  
Sbjct: 111 AYPLFLLAFLGGLIGLLRHYLLPEIAQITPE--SNQTGSPLSRIILWGFLLVLVLLIMGS 168

Query: 175 GIMVMRL 181
           G+ ++  
Sbjct: 169 GLFMVYR 175


>gi|149917608|ref|ZP_01906105.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1]
 gi|149821671|gb|EDM81069.1| general secretion pathway protein F [Plesiocystis pacifica SIR-1]
          Length = 422

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 13/163 (7%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           ++   + AG+ + +A+  +  Q   P  ++    +    + G SL+++++   +      
Sbjct: 90  LMSTLLCAGVTLPEALVALTDQVESPRFKNVLSDIGSKVNEGSSLADAMASHPKV----- 144

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL----SMEAKASAWIIGSL 136
            +     +    +  G+L   L  ++  +  ++ +++KV          A     ++  L
Sbjct: 145 FTKLYINMVRAGEASGSLETVLIRIADFMDQQEELRSKVTTAMFYPVAMALVGVGVVTLL 204

Query: 137 PFCVSTLVYFTSPGY---MNVLINDPRGHMLLGVAAAFMLIGI 176
              V   +     G    +        G     V   +++ G 
Sbjct: 205 MVKVVPSISEIFAGQGAELPFTTRTLIGFSDFLVGYWWLVFGA 247


>gi|296436104|gb|ADH18278.1| general secretion pathway protein F [Chlamydia trachomatis G/9768]
 gi|296437964|gb|ADH20125.1| general secretion pathway protein F [Chlamydia trachomatis G/11074]
 gi|297140465|gb|ADH97223.1| general secretion pathway protein F [Chlamydia trachomatis G/9301]
          Length = 391

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +V  +R+G+ + DA+  +  Q     +      ++E    G   SE+++R          
Sbjct: 64  LVLLLRSGISLYDALTSLRDQYQGRALAGVLTSLMEALRSGGVFSEALARFPHIFDS--- 120

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            F+   +    +  GNL  AL N+ ++L +++ +   + A             ++     
Sbjct: 121 -FYQNSVR-SGESIGNLEGALMNIIKVLEEKEKLSKSLAAALSYPAILLVFSCAVVVFFL 178

Query: 142 TLVY 145
             V 
Sbjct: 179 IGVI 182


>gi|78043922|ref|YP_359488.1| type IV pilus assembly protein PilC [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996037|gb|ABB14936.1| type IV pilus assembly protein PilC [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 402

 Score = 35.8 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 10/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+  AV V+  Q  +  ++    R+ E    G +LSES+    +  P    
Sbjct: 73  LGTMIAAGVPLLTAVNVLSRQVENKTLKKSLIRIEEKLRNGNTLSESLRE-EKIFP---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               +++ V  ++GG L   L  LS        +  K++           ++ +    V 
Sbjct: 128 ELMCSMVEV-GEVGGVLDNVLDRLSLHYEKEAQLSEKIR---SAMTYPMVVLFAAIAAVL 183

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            LV +  P +  +L+       L+     
Sbjct: 184 VLVTYVLPQFTGILLQANIELPLITQVVI 212


>gi|309803910|ref|ZP_07697994.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|309809545|ref|ZP_07703403.1| type II secretion system F domain protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308164005|gb|EFO66268.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308170217|gb|EFO72252.1| type II secretion system F domain protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 331

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS  I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    LIGI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163


>gi|302821967|ref|XP_002992644.1| hypothetical protein SELMODRAFT_135648 [Selaginella moellendorffii]
 gi|300139608|gb|EFJ06346.1| hypothetical protein SELMODRAFT_135648 [Selaginella moellendorffii]
          Length = 622

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 52  FRRVIETQHLGLSLSESISRMVRYM-PLQE-VSFFSTVISVQSQLGGNLSEALANLSRIL 109
             R  +    G +L    + + R +  ++E   FF+  +         L+    +L   L
Sbjct: 372 LARTAQALGAGFALGSVFTHLGRNVVGVRERYGFFAFTL------TFLLTSTSESLPMFL 425

Query: 110 RDRKNMKAKVQALSMEAKASAWII----GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLL 165
            +R+  + +    +   + S+++I      LPF     + +T P Y  V +N      + 
Sbjct: 426 AERQIFERETSRGTY--RVSSYVIANTLMFLPFLFVFSLLYTVPAYFLVGLNHSIEAYVF 483

Query: 166 GVAAAFMLI 174
            +   +M++
Sbjct: 484 FLLDVWMVV 492


>gi|160900921|ref|YP_001566503.1| type II secretion system protein [Delftia acidovorans SPH-1]
 gi|160366505|gb|ABX38118.1| type II secretion system protein [Delftia acidovorans SPH-1]
          Length = 405

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   ++AG+P+  A  ++   +++P      R++      +    S++   R  PL    
Sbjct: 75  MATMMKAGVPLLQAFDIVGRGNTNP---SVTRLLADIRSDVETGTSLNAAYRKHPLY-FD 130

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   +  
Sbjct: 131 SLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKSKIKSALMYPISVVVVAFIVVTIIML 190

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V        +    D     L  +  + + +    +
Sbjct: 191 FVIPAFKDVFSSFGADLPAPTLFVMGVSDIFVQWWWV 227


>gi|27381131|ref|NP_772660.1| general secretion pathway protein F [Bradyrhizobium japonicum USDA
           110]
 gi|27354298|dbj|BAC51285.1| bll6020 [Bradyrhizobium japonicum USDA 110]
          Length = 403

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG  ++D + ++        +R     +      G S +E+++R     P    
Sbjct: 73  LALLLRAGARINDGLELLAADPDLGRLRPVVADIRSRVVSGESFAEALARHEGLFP---- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             +  ++ V  +  G+L + L  L+      + ++ +   LS   +   +++G+    + 
Sbjct: 129 PMYIALVRV-GEASGSLDQVLEVLAGERTRSEALRRR---LSDAIRYPLFVLGAAGCVLL 184

Query: 142 TLVYFTSPGYMNVL 155
             + F  P + +VL
Sbjct: 185 FFLTFVLPQFASVL 198


>gi|325845114|ref|ZP_08168425.1| type II secretion system protein F domain protein [Turicibacter sp.
           HGF1]
 gi|325488856|gb|EGC91254.1| type II secretion system protein F domain protein [Turicibacter sp.
           HGF1]
          Length = 400

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           V AG+ + + + ++  Q + P ++    +V E    G SL ES+S+     P   +    
Sbjct: 75  VDAGVQIDNCLDILSTQLTHPELKKALTQVHEDVQRGESLYESMSKHEEEFPELLLKM-- 132

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                  ++ GNL   L  +S        M AKV+   +     A +       V+ ++ 
Sbjct: 133 ---IQSGEVSGNLDTILLRMSVYYEKENKMNAKVKNAMIYPSILAIVAAG---AVTVILT 186

Query: 146 FTSPGYMNVL 155
           F  P ++ + 
Sbjct: 187 FVMPTFIEMF 196


>gi|255594312|ref|XP_002536066.1| conserved hypothetical protein [Ricinus communis]
 gi|223521010|gb|EEF26318.1| conserved hypothetical protein [Ricinus communis]
          Length = 238

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           + + ++AG+P+  A+A +  Q+    +++  R V      G  LS+++    +  P    
Sbjct: 46  MEQLLQAGVPLLQALADLDEQNEHQGMKAALRNVQRDLEAGKLLSQALQAQPKIFP---- 101

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                +I    +  G L E   +L+R L  +  ++++V+        +   +  +   ++
Sbjct: 102 PLLGQLID-AGERTGQLPEIFGHLTRTLSWQAELRSQVRRG-----LTYPAVLCVMVAIA 155

Query: 142 TLVY 145
             V 
Sbjct: 156 AYVM 159


>gi|313200632|ref|YP_004039290.1| type II secretion system protein [Methylovorus sp. MP688]
 gi|312439948|gb|ADQ84054.1| type II secretion system protein [Methylovorus sp. MP688]
          Length = 395

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+P+  A+ ++       +R+    V      G  LS ++     
Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
              +        ++ V  + G  + E +  +
Sbjct: 321 TTSIA-----IRMLRVGERTG-RMGEMMERI 345


>gi|254498866|ref|ZP_05111573.1| putative type IV pilus, mannose-sensitive hemagglutinin protein
           [Legionella drancourtii LLAP12]
 gi|254351920|gb|EET10748.1| putative type IV pilus, mannose-sensitive hemagglutinin protein
           [Legionella drancourtii LLAP12]
          Length = 408

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
               +   +RAG+P++ A+  +   + +  +    ++++ T + G SL+ ++++      
Sbjct: 72  FCRQMYSLIRAGIPIATAITRLGETTRNKTLADALQKIVITLNKGSSLNVAMAQFPNI-- 129

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
               S F   + +  +  GNL     +L++ L    ++  KV+      +    +  ++ 
Sbjct: 130 ---FSTFFLNLVIIGENTGNLDNIFLHLAKYLELEVDITKKVK---SALRYPIMVFAAII 183

Query: 138 FCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             +  +  F  P     L     G + L       +   ++
Sbjct: 184 IALLIINVFVIPA-FAKLYASMHGILPLPTRILLAISNFII 223


>gi|253998558|ref|YP_003050621.1| type II secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985237|gb|ACT50094.1| type II secretion system protein [Methylovorus sp. SIP3-4]
          Length = 395

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVR 74
                   +   +R G+P+  A+ ++       +R+    V      G  LS ++     
Sbjct: 261 QLARFYRTLGMLLRGGIPLVTAMQMVSSLLQPALRNSLALVERDIREGKPLSSAMEEHGM 320

Query: 75  YMPLQEVSFFSTVISVQSQLGGNLSEALANL 105
              +        ++ V  + G  + E +  +
Sbjct: 321 TTSIA-----IRMLRVGERTG-RMGEMMERI 345


>gi|187930901|ref|YP_001901387.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|241258198|ref|YP_002978464.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|309783226|ref|ZP_07677939.1| bacterial type II secretion system protein F domain-containing
           protein [Ralstonia sp. 5_7_47FAA]
 gi|187728945|gb|ACD30108.1| type II secretion system protein [Ralstonia pickettii 12J]
 gi|240868998|gb|ACS66655.1| type II secretion system protein [Ralstonia pickettii 12D]
 gi|308917970|gb|EFP63654.1| bacterial type II secretion system protein F domain-containing
           protein [Ralstonia sp. 5_7_47FAA]
          Length = 346

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           L   V  +RAG+P + A+   +  +S  + S  + +      GLSL E++       P  
Sbjct: 213 LLSFVALLRAGIPDTVALDNQIASASPWLASRLKPIRNGLIDGLSLPEAMRATGYGFPSP 272

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
           ++       +        ++ A+   + ++  +   +  +         SA   G +   
Sbjct: 273 DLIDEIGAYAGFDDFTDKIAVAVRQYAEVIERQLLARGML--------MSAVFTGFM--F 322

Query: 140 VSTLVYFTSPGYMNVLINDPRGHM 163
           ++ +V       ++ ++    G +
Sbjct: 323 LAFVVLQLGANSLSSILTSAMGQI 346


>gi|58040372|ref|YP_192336.1| hypothetical protein GOX1942 [Gluconobacter oxydans 621H]
 gi|58002786|gb|AAW61680.1| Hypothetical protein GOX1942 [Gluconobacter oxydans 621H]
          Length = 391

 Score = 35.8 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 5   IKKRTAKFLDDFPNALDII-VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +++RT    D     + ++  R+ ++G+ +  +       S+DP   E RR+    + G 
Sbjct: 17  LQRRTQALRDALNRRMQLLFSRAAQSGIVMPQS----GTSSADPFSDEMRRLQSEANQGH 72

Query: 64  SLSESI------SRMVRYMPL---QEVSFFS 85
              E++        M   M     +++   +
Sbjct: 73  G-DEALKRLQQMEDMAERMRQASPEDLKALA 102


>gi|108800832|ref|YP_641029.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS]
 gi|119869972|ref|YP_939924.1| putative adenylate/guanylate cyclase [Mycobacterium sp. KMS]
 gi|126436430|ref|YP_001072121.1| putative adenylate/guanylate cyclase [Mycobacterium sp. JLS]
 gi|108771251|gb|ABG09973.1| adenylate/guanylate cyclase [Mycobacterium sp. MCS]
 gi|119696061|gb|ABL93134.1| putative adenylate/guanylate cyclase [Mycobacterium sp. KMS]
 gi|126236230|gb|ABN99630.1| putative adenylate/guanylate cyclase [Mycobacterium sp. JLS]
          Length = 540

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 32/82 (39%)

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
           AL  ++    +      ++    M    + W++ S    +  L+       M  L     
Sbjct: 198 ALRPIAAQALEAGRPPRRLAQGVMGRTMTVWLLSSGVPVLGILLLAVFSLSMQNLSATQF 257

Query: 161 GHMLLGVAAAFMLIGIMVMRLM 182
           G  ++ +A   +L G+++M L+
Sbjct: 258 GIAVMIIAVVALLFGLILMWLL 279


>gi|57242547|ref|ZP_00370485.1| general secretory pathway protein F [Campylobacter upsaliensis
           RM3195]
 gi|57016832|gb|EAL53615.1| general secretory pathway protein F [Campylobacter upsaliensis
           RM3195]
          Length = 393

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 15/144 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
              I    +++G  +S A  +      +    E F+++  +   GL LS +  ++     
Sbjct: 263 FFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKVGI--- 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +   +   G L    A ++    +++    ++    +E          + 
Sbjct: 320 ---FDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLE--------PLMT 368

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             V  LV F + G    +     G
Sbjct: 369 LLVGILVLFLALGIFLPMWELSSG 392


>gi|297622118|ref|YP_003710255.1| putative general secretion pathway protein F [Waddlia chondrophila
           WSU 86-1044]
 gi|297377419|gb|ADI39249.1| putative general secretion pathway protein F [Waddlia chondrophila
           WSU 86-1044]
          Length = 394

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 14/145 (9%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRM 72
           D        + + V AG+P+ +++  +  Q   +        + E    G SLS ++   
Sbjct: 57  DQLLAFTMQLAQLVGAGVPIYESLIALEEQCRHERYHRILLSLCEQIKAGKSLSAAMEDF 116

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
                          +    +  G+L   L  L+ +L  +  ++  +         +A I
Sbjct: 117 P-----ATFDKLYYSMIRAGESSGSLDVVLEKLAELLAKQYKLRKDI--------MTAMI 163

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLIN 157
              +      ++     G++  +I 
Sbjct: 164 YPGILAGFCLVLIIILLGFVVPMIE 188


>gi|227489285|ref|ZP_03919601.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090816|gb|EEI26128.1| phosphate acetyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 466

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH--LGLSLSESISRMVRYMPLQEV 81
            R+   GL +S A   I+   +DP   EF           G++L ++   M      ++V
Sbjct: 194 SRASALGLDISRA--EIIDHLTDPRAEEFAAQFAELRKKKGVTLEQARETM------KDV 245

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           S+F T++    Q  G +S A    +  +R    +   ++     +  S+  + ++
Sbjct: 246 SYFGTMLVHTGQADGMVSGASHTTAHTIRPSFQI---IKTKPGTSVVSSIFLMAM 297


>gi|315637876|ref|ZP_07893066.1| general secretory pathway protein F [Campylobacter upsaliensis
           JV21]
 gi|315482117|gb|EFU72731.1| general secretory pathway protein F [Campylobacter upsaliensis
           JV21]
          Length = 393

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 15/144 (10%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMP 77
              I    +++G  +S A  +      +    E F+++  +   GL LS +  +      
Sbjct: 263 FFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKAGI--- 319

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +   +   G L    A ++    +++    ++    +E          + 
Sbjct: 320 ---FDELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLE--------PLMT 368

Query: 138 FCVSTLVYFTSPGYMNVLINDPRG 161
             V  LV F + G    +     G
Sbjct: 369 LLVGILVLFLALGIFLPMWELSSG 392



 Score = 35.1 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 1   MKHLIKKRTAKFLDD-FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +K L K+   K  D  F          + AGL + +A+ ++   SS  ++   + +    
Sbjct: 41  LKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSENSSKHLKDAAKELSANL 100

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           + G SLS +   +   + L E+S          +  GNL+   + ++ +   R  +    
Sbjct: 101 NSGQSLSVAFGNLALNLNLSELSLIKMG-----EKTGNLAHIFSQIAEL---RTKLILNK 152

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           +           +  +L      L++F  P ++++ 
Sbjct: 153 KRFKKAIHYPCLVFLALFGAFLFLMFFVVPEFLDIF 188


>gi|269986816|gb|EEZ93094.1| hypothetical protein BJBARM4_0292 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 705

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 9   TAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQH-LGLSLS 66
                  F  A+  +   +  G P    +  +       PV   F   I     LG+SL 
Sbjct: 436 LTAIESSFGAAMSQMSSFLSQGYPPEATLVKVEENMKGTPVAEFFDVTINNIRKLGMSLK 495

Query: 67  ESISR----MVRYMPLQEVSFFSTV---ISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
           ++         R+ P       ++    +S  ++   N S A + +S+ L + + ++ +V
Sbjct: 496 DAFFNPTNGSTRFFPSP--LILASTKIFLSSAAKSVRNASVATSYVSKHLANLRKIEEQV 553

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
           +++  E  +   +   L       +       +  ++    G +
Sbjct: 554 RSMLEEVTSGMRVEVGLISPAMAGIVVGLTTLIGTVLTSLSGSI 597


>gi|149195012|ref|ZP_01872105.1| General secretion pathway protein F [Caminibacter mediatlanticus
           TB-2]
 gi|149134933|gb|EDM23416.1| General secretion pathway protein F [Caminibacter mediatlanticus
           TB-2]
          Length = 397

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
             +G+   +A+ + +   ++  ++  F +  E    G  LS S+ +            F 
Sbjct: 274 TSSGVTFVNALNLSINTFNNEKLKEIFNKAFEEVVEGKKLSISLKKAGFIYD----KSFL 329

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +++  +    +   L NLS +  +   M+       +E      + G + F V+ L+ 
Sbjct: 330 QALALAEET-SEVDNILKNLSELYFEENKMRINTLLSLLEPALMIIVGGVIGFIVTALLL 388

Query: 146 FTS 148
              
Sbjct: 389 PIF 391


>gi|170723698|ref|YP_001751386.1| type II secretion system protein [Pseudomonas putida W619]
 gi|169761701|gb|ACA75017.1| type II secretion system protein [Pseudomonas putida W619]
          Length = 402

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG+P+  A  V+     S    +   R+ +    GL L++++ R  ++      
Sbjct: 72  LATLLRAGVPLLQAFQVMGRSGCSAAQAALLERLKQDVAAGLGLADALQRHPQWFD---- 127

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +  ++ V  Q G  L   L  L+ +L  R+ +  +V+ 
Sbjct: 128 GLYCNLVRVGEQSG-TLDRQLEQLAGMLEQRQALLKRVRK 166


>gi|119505083|ref|ZP_01627159.1| TonB-dependent siderophore receptor [marine gamma proteobacterium
           HTCC2080]
 gi|119459065|gb|EAW40164.1| TonB-dependent siderophore receptor [marine gamma proteobacterium
           HTCC2080]
          Length = 406

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V + LP+ + +     Q+  P ++S    V      G +L+  +++  +     E+
Sbjct: 76  LATLVASALPLDECLQAAAEQTRKPSIKSILLEVRSRVSEGYTLASGMAQYPQAFG--EM 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L+  L  L+    +R+    K++   +       ++G     V+
Sbjct: 134 Y---RAMVHAGEQAGQLAPVLEQLAEYTENRQLTAQKLKLALI---YPFVLMGVAVSVVA 187

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
            L+ F  P  + +  +  +    L V   
Sbjct: 188 ALMVFVVPELVGIFTHTKKELPPLTVGLI 216


>gi|22124672|ref|NP_668095.1| type IV pilin biogenesis protein [Yersinia pestis KIM 10]
 gi|45440117|ref|NP_991656.1| type IV pilin biogenesis protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|153997530|ref|ZP_02022630.1| putative type II secretion system protein [Yersinia pestis
           CA88-4125]
 gi|162100163|ref|YP_652836.2| type IV pilin biogenesis protein [Yersinia pestis Antiqua]
 gi|162139448|ref|YP_646593.2| type IV pilin biogenesis protein [Yersinia pestis Nepal516]
 gi|162421450|ref|YP_001605603.1| type IV pilin biogenesis protein [Yersinia pestis Angola]
 gi|165925869|ref|ZP_02221701.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936613|ref|ZP_02225180.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010015|ref|ZP_02230913.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214119|ref|ZP_02240154.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398755|ref|ZP_02304279.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420522|ref|ZP_02312275.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423299|ref|ZP_02315052.1| putative protein transport protein HofC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469162|ref|ZP_02333866.1| putative protein transport protein HofC [Yersinia pestis FV-1]
 gi|218930444|ref|YP_002348319.1| type IV pilin biogenesis protein [Yersinia pestis CO92]
 gi|229839071|ref|ZP_04459230.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896550|ref|ZP_04511718.1| putative type II secretion system protein [Yersinia pestis
           Pestoides A]
 gi|229899635|ref|ZP_04514776.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901030|ref|ZP_04516153.1| putative type II secretion system protein [Yersinia pestis
           Nepal516]
 gi|270489208|ref|ZP_06206282.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|21957483|gb|AAM84346.1|AE013678_1 putative integral membrane protein [Yersinia pestis KIM 10]
 gi|45434972|gb|AAS60533.1| putative type II secretion system protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115349055|emb|CAL22016.1| putative type II secretion system protein [Yersinia pestis CO92]
 gi|149289167|gb|EDM39247.1| putative type II secretion system protein [Yersinia pestis
           CA88-4125]
 gi|162354265|gb|ABX88213.1| putative protein transport protein HofC [Yersinia pestis Angola]
 gi|165915262|gb|EDR33872.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922481|gb|EDR39658.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990922|gb|EDR43223.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204750|gb|EDR49230.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961328|gb|EDR57349.1| putative protein transport protein HofC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051259|gb|EDR62667.1| putative protein transport protein HofC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057469|gb|EDR67215.1| putative protein transport protein HofC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681755|gb|EEO77848.1| putative type II secretion system protein [Yersinia pestis
           Nepal516]
 gi|229687127|gb|EEO79202.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695437|gb|EEO85484.1| putative type II secretion system protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700624|gb|EEO88655.1| putative type II secretion system protein [Yersinia pestis
           Pestoides A]
 gi|270337712|gb|EFA48489.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
 gi|320016633|gb|ADW00205.1| putative type II secretion system protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 399

 Score = 35.4 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           ++   +R                  ++AGLP+ +++ ++  ++ D   R     + +   
Sbjct: 54  RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 106

Query: 61  LGLSLSESISRMVRYMP 77
            G SLSE + +     P
Sbjct: 107 QGQSLSEVMEQYPHVFP 123


>gi|332969022|gb|EGK08062.1| type IV pilin biogenesis protein PilC [Kingella kingae ATCC 23330]
          Length = 422

 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+  A  ++    ++  + +    +      G +L +S ++  +Y      
Sbjct: 91  LSTMMKAGLPLMQAFDIVAKGHANASMTAMLMEIRNDVEQGEALGDSFAKHPKY-----F 145

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    + GG L   L  L+      + +K KV++      +   +  +L   + 
Sbjct: 146 DKFYCNLVAAGEAGGVLEGLLDKLATYKEKTEAIKKKVKSALTYPISIVVVAVALVIVMM 205

Query: 142 TLVYFTSPGYMNVLIND--PRGHMLLGVAAAFMLIGIMVM 179
             V        + +  +  P    ++ ++ AF+  G +++
Sbjct: 206 MFVLPEFGKVYSSMGAELPPLTQFMMNISNAFVEFGWLII 245


>gi|192361623|ref|YP_001983784.1| general secretion pathway protein F [Cellvibrio japonicus Ueda107]
 gi|190687788|gb|ACE85466.1| General secretion pathway protein F [Cellvibrio japonicus Ueda107]
          Length = 411

 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 6   KKRTAKF-LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGL 63
           ++R  K  + D       +   VR+GLP+ +A+     QS    V+    +V      G 
Sbjct: 63  RRRAGKLSVRDLSLITRQLASLVRSGLPLDEALQATAKQSQKANVKRVVLQVRTRVLEGF 122

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           SL++++            +     +    +  G LS  L  L+   +  + ++ +++   
Sbjct: 123 SLAQAMGD-----NPGAFNDMYRALVRAGEGSGYLSPVLERLADYTQTSQQLQQRIK--- 174

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           M       ++      +  L+ +  P  + +     R   +L  A  
Sbjct: 175 MAMIYPVVMLMVSIGVIVALMVWVVPKLVKIFEQGGRELPMLTQALI 221


>gi|323975731|gb|EGB70827.1| type II secretion system protein F [Escherichia coli TW10509]
          Length = 400

 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLALDLEQGVAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160
              V  +++F  P +  +    N P 
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199


>gi|331671621|ref|ZP_08372419.1| protein transport protein HofC [Escherichia coli TA280]
 gi|331071466|gb|EGI42823.1| protein transport protein HofC [Escherichia coli TA280]
          Length = 400

 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ + ++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLVLLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWPEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYQAMIRTGELTGKLDECCFELARQQKAQRQLADKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDPR 160
              V  +++F  P +  +    N P 
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPL 199


>gi|150019029|ref|YP_001311283.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905494|gb|ABR36327.1| type II secretion system protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 400

 Score = 35.4 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRS-EFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +GLP+ +A+ ++   + + +   E  ++ +    G SL  S+          E+
Sbjct: 274 LSTLIASGLPLVEALKIVADVAGNKIAEIELLKIRDKVVRGESLYTSMRESGI---FPEM 330

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            +  +++ +  + G +L + L   +    +  +        S+   + A +   L   + 
Sbjct: 331 LY--SMVKIGEETG-SLDDILNKTADFYDEELD--------SIIQSSVALMEPILIVVMG 379

Query: 142 TLVYFTSPGYMNVLIND 158
            ++ F     M  + + 
Sbjct: 380 LIIGFMVASIMIPMFDS 396


>gi|51595055|ref|YP_069246.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153948491|ref|YP_001402329.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis IP
           31758]
 gi|51588337|emb|CAH19945.1| putative outer membrane protein export (MTB) sytem, hofC subunit
           [Yersinia pseudotuberculosis IP 32953]
 gi|152959986|gb|ABS47447.1| putative protein transport protein HofC [Yersinia
           pseudotuberculosis IP 31758]
          Length = 399

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           ++   +R                  ++AGLP+ +++ ++  ++ D   R     + +   
Sbjct: 54  RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 106

Query: 61  LGLSLSESISRMVRYMP 77
            G SLSE + +     P
Sbjct: 107 QGQSLSEVMEQYPHVFP 123


>gi|294781781|ref|ZP_06747114.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA]
 gi|294481891|gb|EFG29659.1| general secretion pathway protein F [Fusobacterium sp. 1_1_41FAA]
          Length = 345

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  +   +   +++ +   +G ++ +S            +
Sbjct: 15  LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTMGKNIYDSFKPFENTFGSTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +L GN+ E+L ++S+ L    ++  + +   +       +I      VS
Sbjct: 75  YILKIG-----ELSGNIVESLEDISKSL--DFDLSRRKKLGGILI-YPIVVICLTFLIVS 126

Query: 142 TLVYFTSPGYMNVL 155
            L+ +  P ++ + 
Sbjct: 127 FLLIYILPSFITIF 140


>gi|283788195|ref|YP_003368060.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168]
 gi|282951649|emb|CBG91349.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium
           ICC168]
          Length = 342

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++AGLP+ D++  +  +    +   F +    +I       S++     M   +P  E+ 
Sbjct: 20  IKAGLPLYDSLQKLQKEGQALLGKGFSKRLLGLINQMKQETSVAAVFEGM---VPNSEL- 75

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +   ++  G LSE    L  I++    ++ K+    +       +I      ++ 
Sbjct: 76  ----SVITAAERSGRLSEGFFTLVSIIKYNDELRKKIIGALI---FPLIMITLSLIVIAG 128

Query: 143 LVYFTSPGYMNVL 155
                 P + +V+
Sbjct: 129 YSQKVFPAFASVV 141


>gi|312879793|ref|ZP_07739593.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
 gi|310783084|gb|EFQ23482.1| Type II secretion system F domain [Aminomonas paucivorans DSM
           12260]
          Length = 385

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS--DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           +   +++GLP++  + ++   SS    +   +R + E+   G SL+ ++           
Sbjct: 69  LAGFLKSGLPLAQVLGLLERTSSKNQRLGDLYRTLRESVESGRSLAVALKESGL------ 122

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAWIIGSLPFC 139
                  +   ++    L E L   +R+  D   ++ K+Q+ ++         +G + F 
Sbjct: 123 FRPVLLGLVESAEASSKLPEILDRAARLFGDELKLRRKIQSAVTYPLAMLVIGVGVVGFL 182

Query: 140 VSTLV 144
           ++ +V
Sbjct: 183 LTYVV 187



 Score = 33.9 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +++G+P+  A+ +      D  R+ +R V E+  +G   S+ + R        E  
Sbjct: 261 LSTLLKSGIPLVQALELTAPMDRD--RNRWRAVAESVRMGYRFSQGLERQG---GFPE-- 313

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
               V+ +  +LGG+L ++L  L     +R   
Sbjct: 314 DLLAVLRIA-ELGGDLPDSLERLGATCWERSQA 345


>gi|167769280|ref|ZP_02441333.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
           17241]
 gi|167668248|gb|EDS12378.1| hypothetical protein ANACOL_00603 [Anaerotruncus colihominis DSM
           17241]
          Length = 290

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +   + P  +  I + + A   V   +      S     +E   +      G S   
Sbjct: 141 KRDEIEAELPRFVATITQELAASRDVLSMIEHYKQNSGPVFSAELDVLTADMRSG-SYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S     + +    G N       LS  ++  +  + K +A+ +  K
Sbjct: 200 ALTRFEARFNSPLLSDIVRGL-IGVLRGDNGVHYFQMLSHDMKQLELQRLKAKAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
              +    L   + T +       ++ L
Sbjct: 259 IRVFSFVLLMCFLVTYLSIIIYEIIHSL 286


>gi|167586040|ref|ZP_02378428.1| type II secretion system protein [Burkholderia ubonensis Bu]
          Length = 336

 Score = 35.4 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
             +   ++AGLP++ A+ ++   +  D +      +      G   + +++      P Q
Sbjct: 4   QQLASLLQAGLPLAPALEMLARTRGPDGMPRIAAGLAREIGGGRRFAAALA----RYPTQ 59

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
             S +  +I +  +  G L   LA ++         + K++A        A I+ +L   
Sbjct: 60  FGSLYRQLIEI-GETSGALGPVLARVADHRERADAQRRKLRAALAYPV--AVILFALAIT 116

Query: 140 VSTLVYFTSPGYMNVL 155
           ++ +++   P +  + 
Sbjct: 117 IALMLWVV-PTFRQIF 131


>gi|325916237|ref|ZP_08178518.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537531|gb|EGD09246.1| type II secretory pathway, component PulF [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 230

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A+ +I     +P +R+   ++      G SL E++S      P+Q  
Sbjct: 81  MATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVS----RHPVQ-F 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++    + + +K K++         A ++       +
Sbjct: 136 DELYRNLVRAGEGAGVLETVLDTIATYKENIEALKGKIKKALF---YPAMVVAVALLVSA 192

Query: 142 TLVYFTSPGYMNVL 155
            L+ F  P + +V 
Sbjct: 193 ILLIFVVPQFEDVF 206


>gi|320531924|ref|ZP_08032831.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135860|gb|EFW27901.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 215

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
              + +A ++  LP     L         ++L++   G  +  +    M +G +V R +I
Sbjct: 4   AGPRTTARLLACLPVVGLGLGMLVGADPASLLLDGGVGSAVGALGIVLMAVGHLVTRRLI 63

Query: 184 N 184
            
Sbjct: 64  R 64


>gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
 gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
          Length = 241

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIV 41
           +   IKKR  +    FP+ ++ +   + AGL +S A   I 
Sbjct: 137 LSRKIKKRHLEIQLSFPDFINKLALMLNAGLTMSKAWEKIS 177


>gi|110833474|ref|YP_692333.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2]
 gi|110646585|emb|CAL16061.1| type IV pilus assembly protein TapC [Alcanivorax borkumensis SK2]
          Length = 410

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++     +P ++    ++      G + + ++      M     
Sbjct: 79  MATMMKAGVPLVQAFEIVADGLDNPAMKVVVMKLKTEVEGGNNFAGAL-----RMHPLLF 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  ++      + +K K++      K    +I       +
Sbjct: 134 DDLYCSLVDAGEQSGALETMLDRVALYKEKSEALKQKIKKAL---KYPIAVICVAVIVTA 190

Query: 142 TLVYFTSPGYMNVL 155
            L+    P +  + 
Sbjct: 191 ILLIKVVPTFKELF 204


>gi|313890950|ref|ZP_07824572.1| putative magnesium and cobalt transport protein CorA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120674|gb|EFR43791.1| putative magnesium and cobalt transport protein CorA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 305

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160
            L      +R+    + +++     A  +      +P  +    Y  +  YM  L   P 
Sbjct: 221 TLRETIIQIREMAKSQLEMRQNKNMAVLTTVTTCCMPLTILVGWYGMNFKYMPEL-ASPL 279

Query: 161 GHMLLGVAAAFMLIGIMVMRL 181
           G+ L+ + A  + I  ++   
Sbjct: 280 GYPLVIIFAVTIFIAAILYSK 300


>gi|302669156|ref|YP_003832306.1| CorA-like Mg2+ transporter protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396820|gb|ADL35724.1| CorA-like Mg2+ transporter protein [Butyrivibrio proteoclasticus
           B316]
          Length = 305

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           +   LG  L E+ +   +   L+    FS+ +        + +  L + +  L D    +
Sbjct: 181 QLLDLGQELEENENGFFKEENLRYFHMFSSRV----DRLYDSATHLRDYTIQLNDLYQSQ 236

Query: 117 AKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
             V+   +    +      +P  +    Y  +  YM  L     G+ ++ V + F+++G 
Sbjct: 237 LDVRQNRIMTVLTVVTTIFMPLTLIVGWYGMNFKYMPEL-ESRLGYPVVIVLSIFIVVGS 295

Query: 177 MVMRLMINF 185
           ++   +   
Sbjct: 296 LIFFKIKKI 304


>gi|225157634|ref|ZP_03725024.1| Type II secretory pathway component PulF-like protein [Opitutaceae
           bacterium TAV2]
 gi|224802701|gb|EEG20954.1| Type II secretory pathway component PulF-like protein [Opitutaceae
           bacterium TAV2]
          Length = 321

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + + + AGLP+  A+    G +  P R     ++     G+S  +++     ++P  +  
Sbjct: 15  LAQQLEAGLPLIAAIRGNAG-APKPDRD---AMVRRLEDGMSFPDALDAAGPWLPRGDRL 70

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
           F +T       + G L   L NLS             Q  +   +    +    P  +  
Sbjct: 71  FLATA-----SIAGRLPHTLRNLSS---------RHGQLAAASGRV--VMACIYPVVILH 114

Query: 143 LVYFTSPGYMNVLINDPRG 161
           +     P  +  +++  RG
Sbjct: 115 VALLMFP--LLRMLDWERG 131


>gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
 gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
          Length = 445

 Score = 35.4 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQHLGLSLSES 68
           ++++P  +   V  + AG+ +  AV  I           V  +F++  +   LG+S +++
Sbjct: 301 MEEYPMIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 360

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  +   + L      S ++S     G    + L+ L     +  + + +      E  +
Sbjct: 361 LRELGSSIQLPCYKKLSVLLSQSLLRGTR--DLLSRLEEEETEAFSERKETARRKGEEAS 418

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++  +   +  L     P +++ 
Sbjct: 419 TKLLMPMILMLIVILTLLMVPAFLSF 444


>gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
 gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
          Length = 615

 Score = 35.4 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           N L  I   +RAGL     +  I        +    +R+     LG  L ++  +     
Sbjct: 395 NLLRAISEGIRAGLSPETIIKNIKESQEMGKLSYILKRIYAYISLGYPLRDAFLKGAE-- 452

Query: 77  PLQEVSFFSTVISVQS--QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIG 134
            + + +   +++S+     +G    E++ +L+  +  +  +K +      + K   +   
Sbjct: 453 EIVDFTSRISLVSMADMIDIGSLTPESIESLAEQVETQIKIKRE---YESKVKILLYTPY 509

Query: 135 SLPFCVSTLVYFTSPGYMNVLIND 158
                    V   S   + ++  +
Sbjct: 510 IGVIISIIAVNLLSAAILGLITGN 533


>gi|241764544|ref|ZP_04762563.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241366036|gb|EER60646.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 424

 Score = 35.4 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVI 56
           + HL + +     +D    L  +   +RAG+P  DA+  +V +S+      + +  R ++
Sbjct: 62  LMHLFRNQVRA--EDLAGFLRDLGLMMRAGVPALDALTTLVEESNSVGNRAMAAVARNML 119

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
           E  + G+ ++++ +R     P + V    ++        G L   LA  +  +    N++
Sbjct: 120 EDLNAGVGMTDAFNRHPNVFP-ETVRNLVSI----GDQTGTLDRMLAEAAEHVERMINIR 174

Query: 117 AKVQALSMEAKAS-AWIIGSLPFCVSTLV 144
             ++   +      A IIG   F +  +V
Sbjct: 175 RDIKTALIYPSFVFASIIGVAIFWIYYVV 203


>gi|326403163|ref|YP_004283244.1| type II secretion system protein [Acidiphilium multivorum AIU301]
 gi|325050024|dbj|BAJ80362.1| type II secretion system protein [Acidiphilium multivorum AIU301]
          Length = 406

 Score = 35.4 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 13/164 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           D   +    +   + AGL +  A+    G ++ P VR+    + +    G +L  ++   
Sbjct: 67  DALADFTRELAAMLGAGLDLERALRFAAGTAATPRVRAIILAICDKVRDGAALWRALGHE 126

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK-AKVQALSMEAKASAW 131
               P      F   +    +  G L+  L +L+ +L   ++++ A +  L+  A  +  
Sbjct: 127 PHSFPP-----FYVGLVRAGEESGALAATLEDLAELLERNRSLRAAMIAGLTYPALLALA 181

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIG 175
             G++ F ++ ++    P ++ +   +  G  L       + IG
Sbjct: 182 ATGAIVFLLTNVL----PEFVPIFAEN--GVPLPATTRLLLTIG 219


>gi|145600186|ref|YP_001164262.1| type IV pilin biogenesis protein [Yersinia pestis Pestoides F]
 gi|294505133|ref|YP_003569195.1| type II secretion system protein [Yersinia pestis Z176003]
 gi|108774474|gb|ABG16993.1| type II secretion system protein [Yersinia pestis Nepal516]
 gi|108780833|gb|ABG14891.1| putative type II secretion system protein [Yersinia pestis Antiqua]
 gi|145211882|gb|ABP41289.1| type II secretion system protein [Yersinia pestis Pestoides F]
 gi|262363194|gb|ACY59915.1| type II secretion system protein [Yersinia pestis D106004]
 gi|262367126|gb|ACY63683.1| type II secretion system protein [Yersinia pestis D182038]
 gi|294355592|gb|ADE65933.1| type II secretion system protein [Yersinia pestis Z176003]
          Length = 378

 Score = 35.4 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           ++   +R                  ++AGLP+ +++ ++  ++ D   R     + +   
Sbjct: 33  RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 85

Query: 61  LGLSLSESISRMVRYMP 77
            G SLSE + +     P
Sbjct: 86  QGQSLSEVMEQYPHVFP 102


>gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola
           At-22]
 gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola
           At-22]
          Length = 401

 Score = 35.4 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S P+ R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E      I
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373

Query: 133 IGSLPFCVSTLVYF 146
            GSL   +   +Y 
Sbjct: 374 TGSLVGILLVAMYL 387


>gi|320172804|gb|EFW48036.1| Type IV fimbrial assembly protein PilC [Shigella dysenteriae CDC
           74-1112]
          Length = 266

 Score = 35.4 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
             +  +   ++AGL +S+ +A++  Q      ++  + +      G++ S ++       
Sbjct: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
           P          +    +L G L E    L+R  + ++ +  KV+      +    I+   
Sbjct: 122 PP-----LYRAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK---SALRYPIIILAMA 173

Query: 137 PFCVSTLVYFTSPGYMNVL--INDP-----------------RGHMLLGVAAAFMLIGIM 177
              V  +++F  P +  +    N P                    +L+       +   +
Sbjct: 174 IMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKL 233

Query: 178 VMRL 181
           +MR 
Sbjct: 234 LMRR 237


>gi|167772242|ref|ZP_02444295.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
           17241]
 gi|167665345|gb|EDS09475.1| hypothetical protein ANACOL_03617 [Anaerotruncus colihominis DSM
           17241]
          Length = 292

 Score = 35.4 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  +   + P  +  I + +     V   +      + +   +E   +      G S   
Sbjct: 143 KRDEIEAELPRFVATITQELAVSRDVLSMIEHYKQHAGETFSAELDVLTADMRSG-SYEA 201

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S     + +    G N       LS  ++  +  + K +A+ +  K
Sbjct: 202 ALTRFEARFNSPLLSDIVRGL-IGVLRGDNGINYFQMLSHDMKQLELQRLKAKAMKIPPK 260

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             A+ +  L   + T +       ++ L
Sbjct: 261 IRAFSLTLLMCFLGTYLAIIIYEIIHSL 288


>gi|222055731|ref|YP_002538093.1| type II secretion system protein [Geobacter sp. FRC-32]
 gi|221565020|gb|ACM20992.1| type II secretion system protein [Geobacter sp. FRC-32]
          Length = 402

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 24/175 (13%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++  ++AGLP+  A+  I+ +     +      V E    G +LS +  +  +  P    
Sbjct: 72  LLVLIKAGLPIIQALDTILERVEKGRLPEILNDVREDVKGGAALSTAFQKHPKVFPH--- 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +  G+L + ++     L+  +  K KV            I+      V+
Sbjct: 129 --LYIASVQAGERTGDLPQTISRYIAFLKKSEGFKKKV---ISALIYPGIILTVAFLAVT 183

Query: 142 TLVYFTSPGYMNVLINDPRGHML---------------LGVAAAFMLIGIMVMRL 181
            L+ +  P +  V  +      L                 VA   ++I   ++R 
Sbjct: 184 MLLVYVVPTFSQVYADSKSSLPLPTQMLIGFTSVLKRYFLVAVGLIIISAFLLRK 238


>gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 220

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP---VRSEFRRVIE 57
           +  + ++R  + + +    + ++     +G+ V  A+ V+  +  D    +  E R V+ 
Sbjct: 134 LATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLT 193

Query: 58  TQHLGLSLSESISRMVRYMPLQEVS 82
               GL L E + +    + + E+S
Sbjct: 194 RVDSGLELGEELRKTAAVLDVDELS 218


>gi|331269420|ref|YP_004395912.1| putative pilin biogenesis protein [Clostridium botulinum BKT015925]
 gi|329125970|gb|AEB75915.1| probable pilin biogenesis protein, putative [Clostridium botulinum
           BKT015925]
          Length = 396

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 27  VRAGLPVSDAVAVIV-GQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           ++AG+ +  A+ V+   + +  +R   + +      G +L +SI++  +  P     F  
Sbjct: 73  LKAGVNIETALEVLENQKINYLIRDSLKIIRRDIERGRTLFQSINKFSKIYP----EFMR 128

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
            +I +  + G NL      L++   D+  MK K++   M       ++         + +
Sbjct: 129 QMIFIGEKSG-NLDNIFIKLAKYYMDQHRMKKKIKNAIM---YPLCVLIMTIIVTLFITF 184

Query: 146 FTSPGYMNVLI 156
              P +++  I
Sbjct: 185 RIIPKFVDNFI 195


>gi|226226497|ref|YP_002760603.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27]
 gi|226089688|dbj|BAH38133.1| general secretion pathway protein F [Gemmatimonas aurantiaca T-27]
          Length = 434

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           +     +  +   + AG+P+  A++      +   R+ F R+      G SLS +     
Sbjct: 99  ETLAALVRSMATLLAAGVPIDRALSHAASSENVHWRAPFVRIRNAVRRGESLSTAC---A 155

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
               L  +   +      ++  G+L+ A   L+  L     ++A+V+ 
Sbjct: 156 AESALPSIMAPTVA---AAEATGSLASAFEGLAEYLERGAELRARVRG 200


>gi|291087540|ref|ZP_06346746.2| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
 gi|291074702|gb|EFE12066.1| putative bacterial type II secretion system protein F domain
           protein [Clostridium sp. M62/1]
          Length = 332

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +++ +P+ + ++V+   +S P   E    + +   +G   SE++S           
Sbjct: 3   ISILLKSAVPLYEGLSVMAEDASSPREKEILTAMSDKLRMGFPFSEAVSEAGC------F 56

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             + T ++V  +  G L E + +LSR       +   ++         A +I  L   + 
Sbjct: 57  PAYVTQMTVLGERTGTLDETMEHLSRFYEREYRLGENLRR---AVTYPAIMIVMLLVILF 113

Query: 142 TLVYFTSP 149
            L     P
Sbjct: 114 ILFTRVMP 121


>gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC
           35316]
          Length = 402

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V A LP+  A+  I  Q+ D  + +    + E    G +L ++ S+  R       
Sbjct: 72  LSTLVNAALPLESALKAISKQTEDKKLAAMVVEIREKVVEGHTLFDAFSQFPR-----TF 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 + +  +  G+L + L  L+     R+ MK+K+ QA+      +   I  +   +
Sbjct: 127 DKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVVAIAVISILL 186

Query: 141 STLV 144
             +V
Sbjct: 187 VAVV 190


>gi|183013923|ref|YP_001837237.1| hypothetical protein pAW63_021 [Bacillus thuringiensis serovar
           kurstaki]
 gi|70672698|gb|AAZ06591.1| hypothetical protein pAW63_021 [Bacillus thuringiensis serovar
           kurstaki]
          Length = 277

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 51/156 (32%), Gaps = 19/156 (12%)

Query: 31  LPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE---SISRMVRYMPLQEVSF---- 83
             +  ++     +S   +R + + ++ +  +G    +   +  +M      ++++F    
Sbjct: 110 QTLLTSLGRASDRSQGELREDLKILLASV-MGADQEQVLQAFKQMSNKYR-EDITFDQYL 167

Query: 84  --FSTVI---SVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
               T +       +    L +   + +     + + + K +    + K    +I    F
Sbjct: 168 EQLETCVLEGRTNLET---LKDIKTHHNETKEKKDDYERKKEGHLKDMKMLCGVIVV--F 222

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            ++    F    Y+      P G +  G+    M  
Sbjct: 223 VLAISFSFGFKTYLTAFAGHPIGWITSGIYMILMFF 258


>gi|127514367|ref|YP_001095564.1| type II secretion system protein [Shewanella loihica PV-4]
 gi|126639662|gb|ABO25305.1| type II secretion system protein [Shewanella loihica PV-4]
          Length = 422

 Score = 35.4 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++      P +R     ++     G+ LS+S+    +Y     V
Sbjct: 90  IATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQYFDDLYV 149

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                      +  G+L      ++      + +K+K++ 
Sbjct: 150 DLVG-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184


>gi|307545560|ref|YP_003898039.1| type IV pilus assembly protein PilC [Halomonas elongata DSM 2581]
 gi|307217584|emb|CBV42854.1| K02653 type IV pilus assembly protein PilC [Halomonas elongata DSM
           2581]
          Length = 408

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAG+PV   + V+      P +R     + +    G S++E++ R  R+     +
Sbjct: 78  MATLLRAGIPVLQGLGVVAKGVEKPAMRLLVEALSKEVTEGASVAEALGRHPRHFGGLFI 137

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
              +       +  G L   L  ++      + ++ +V+
Sbjct: 138 HLVA-----AGEQSGTLERMLDRVATHKEKIERLQGRVR 171


>gi|299771789|ref|YP_003733815.1| pilin biogenesis protein [Acinetobacter sp. DR1]
 gi|298701877|gb|ADI92442.1| pilin biogenesis protein [Acinetobacter sp. DR1]
          Length = 408

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F    + LDI      +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++        F +++    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----KLFCSLVE-SGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSELLKQKIKK 172


>gi|325109358|ref|YP_004270426.1| type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969626|gb|ADY60404.1| Type II secretion system F domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 337

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMV 73
           +     D++  +VR   P+ DA+  +  + +   + E ++ V++    G SLS ++    
Sbjct: 8   ELVEFNDMLAGTVRGNAPLPDAI-RLAQEGAGRRQRELQQFVLDRLERGQSLSAAL---A 63

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
               L +  +    +    + G +L   L   SR L     ++  +      A     ++
Sbjct: 64  ERPDLFDPRY--QQVVAAGEEGNHLGAVLEAFSRYLWQLIELRRSL----SRALLYPLLV 117

Query: 134 GSLPFCVSTLVYFTSPGYMNVLIND 158
             + + +   V   +         D
Sbjct: 118 TCIGYVLFVFVGGITTSRFVSFYRD 142


>gi|291529646|emb|CBK95232.1| hypothetical protein ERE_34920 [Eubacterium rectale M104/1]
          Length = 331

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 46/144 (31%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            ++++     +   + + +        DP+RS             ++  ++  M      
Sbjct: 166 FINMLDNVSSSENTIGEMLHRTAPYLKDPLRSMTEECYSEIKTDGNVPLALKHMADKANH 225

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
           +++      +   +    N SE + +    +R     K + + +   A     I+     
Sbjct: 226 KKLKQILNSLKSCATHNENYSEVIEDNRESIRAYIMFKKEERNIIKNALFETVILAIAGV 285

Query: 139 CVSTLVYFTSPGYMNVLINDPRGH 162
            +  +V       +N++ +   G 
Sbjct: 286 VMVYMVGTMVDNAINIVFHTLPGQ 309


>gi|170025715|ref|YP_001722220.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186894063|ref|YP_001871175.1| type IV pilin biogenesis protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|169752249|gb|ACA69767.1| type II secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697089|gb|ACC87718.1| type II secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 378

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
           ++   +R                  ++AGLP+ +++ ++  ++ D   R     + +   
Sbjct: 33  RYWQGERLVAMTRQL-------ATLLQAGLPLVNSLQLLAKEADDSAWRCLLDEISQQVA 85

Query: 61  LGLSLSESISRMVRYMP 77
            G SLSE + +     P
Sbjct: 86  QGQSLSEVMEQYPHVFP 102


>gi|302389892|ref|YP_003825713.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
 gi|302200520|gb|ADL08090.1| Type II secretion system F domain protein [Thermosediminibacter
           oceani DSM 16646]
          Length = 377

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 7/125 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            +       +   + +G+PV + ++V+  Q+S P +    RRVI     G +LSE+    
Sbjct: 40  RELAVFCRQMASMLESGIPVIECLSVMCQQNSHPGLTRALRRVIRDLKRGFTLSEAFRNQ 99

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA-LSMEAKASAW 131
               P          +    ++ G L + L  L+         + +++  ++  A   A 
Sbjct: 100 PGIFP----EILIYTVET-GEIAGCLEDILKKLAVHFETMAKYRERLKTSMTYPAILGAV 154

Query: 132 IIGSL 136
            +   
Sbjct: 155 ALVVF 159


>gi|297616457|ref|YP_003701616.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144294|gb|ADI01051.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 403

 Score = 35.4 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 16/145 (11%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESIS 70
           F   F          +++GLP+   + V+  Q+ +  +R     ++ +   GL L E+++
Sbjct: 69  FTRQF-------ATMIKSGLPLLHCLQVLQLQARNRHLRQATTGIMRSVRRGLPLWEALA 121

Query: 71  RMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130
                 P      +  ++    + GG L E L  L+  L     +K +++   +     A
Sbjct: 122 E----YPSIFSDLYVQMVK-AGETGGRLDEVLERLAAHLEKEHEVKQRIKNALIYPCTVA 176

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVL 155
            +  ++   V+ L  F  P + +V 
Sbjct: 177 ILTLAV---VAFLTSFVVPAFASVF 198


>gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
 gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
          Length = 339

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 15/131 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD++   + AG  +  A+  +            R        G    E+ + +      
Sbjct: 205 VLDVLAALLSAGRSLPAALDDLGRTLPG--ARGLRATAALLLWGRDWDEAWAGLDT---- 258

Query: 79  QEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +  +  T   ++   + G   +  LA  +  +R       +    + E      +   +
Sbjct: 259 -DPVWIETAARLRPLHRSGMAGARTLAETAAAVR---QQTRRADERAAE---ELAVCLVM 311

Query: 137 PFCVSTLVYFT 147
           P  +  L  F 
Sbjct: 312 PLGLCLLPAFV 322


>gi|269469296|gb|EEZ80804.1| type II secretory component PulF [uncultured SUP05 cluster
           bacterium]
          Length = 412

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           +RAGLP+ + +++I  Q+ +P ++    ++      G  LS+S  +     P    +   
Sbjct: 83  IRAGLPILETISMIEKQTINPTLKQVITQIHNDVESGTPLSDSFVKH----PYV-FNNVY 137

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
             +    +  G +   L+ L   +   + +++ ++           ++      +  ++ 
Sbjct: 138 INLLRAGESSGKVDLFLSKLVIGMEKDEKIRSSIKGALT---YPIVLLVVAIAVIVLMMV 194

Query: 146 FTSPGYMNVLINDPRGHML 164
           F  P + ++    P G   
Sbjct: 195 FVVPVFQDMFKGVPGGLPA 213


>gi|88859015|ref|ZP_01133656.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
           D2]
 gi|88819241|gb|EAR29055.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
           D2]
          Length = 412

 Score = 35.4 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 13/155 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+  A+ +I   S    ++    ++ +    G   S+++ +          
Sbjct: 80  IATMLMAGVPLIQAIDMIGSGSEKKSLQRLITKIADEVKAGNPFSDALRKHPIL-----F 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L      ++      + +K+K++           ++       +
Sbjct: 135 DDLYCDLVASGEQSGALDNIFDRVATYKEKSEALKSKIKK---AMIYPIAVLSIAFVVTT 191

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
            L+ F  P + +V      G      A    +IGI
Sbjct: 192 ILLIFVVPQFQSVF----AGFGAELPAFTLFVIGI 222


>gi|78777585|ref|YP_393900.1| type II secretion system protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78498125|gb|ABB44665.1| type II secretion system protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 414

 Score = 35.4 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           I+   +RAG+P++ A+   V    + P++++   V      G SL          + L++
Sbjct: 284 ILSELIRAGIPITQALETSVSMVENLPLKNKLASVRFAVEKGSSLH---------VGLED 334

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              F   I +Q       S  L  ++  + +   M+            S  I   + F +
Sbjct: 335 TKLF-ENIIIQMISAAEDSGTLDTMTGKVAEYYKMRFDAVING----LSESIEPVMLFFI 389

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLG 166
           +++V   + G    + +   G++++G
Sbjct: 390 ASMVLLLALGIFLPMWD--IGNVVMG 413


>gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans
           DSM 11486]
          Length = 581

 Score = 35.1 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-----QSSDPVRSEFRRVIETQHLG 62
           R +    +FP  +  +   V +GL    A   I+      Q +  +   F  V+  + LG
Sbjct: 97  RASAIDGEFPYTISYLSIMVMSGLSPYIAFERILKGSIIFQKTGELAQRF--VLLNKILG 154

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL 122
                + + +    P   V    +      + GG++ + L   +R L +   +  K+ A 
Sbjct: 155 KDPLTAFAMLSDRNPSSRVRETLSGYISTVKAGGDVIDYLNKRARALFNDLLVSMKIIAD 214

Query: 123 SMEAKASAWI-IGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVMR 180
            +     +++ I  L     T++YF +  Y  V+      G M L +      I I ++ 
Sbjct: 215 RLGGLLESYLAIVLLTMISFTVLYFVTASYSGVISFGIDTGTMSLLLYILMPFISIAIIY 274



 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 5/173 (2%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           R    ++     +  +V   + GLP   ++  +  +         +++     LG+SL +
Sbjct: 373 REYTIINGITRFIRDLVEVRKTGLPPEKSIIELSTRDYGVFSKYLKKISLELTLGVSLRK 432

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
            I  + + +          +++   ++GG   + L NL+      + ++A+ +     + 
Sbjct: 433 IIEELFKKIKPWRAKVLLFILTDSIEVGGGTVDVLENLAWFAESIEAIEAEKKR----SM 488

Query: 128 ASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDPRGHMLLGVAAAFMLIGIMVM 179
            +  I+  L   ++         YM  + +   +           +++   +M
Sbjct: 489 RTLMIVPYLGAVLTAFTIVFMAVYMGRIPLASGQFRAAASTVLPSIVLNTYLM 541


>gi|167751232|ref|ZP_02423359.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702]
 gi|167655739|gb|EDR99868.1| hypothetical protein EUBSIR_02218 [Eubacterium siraeum DSM 15702]
          Length = 399

 Score = 35.1 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
            D       +   + +G+ +  A+ ++  QS +   +     + E    G S SE+I+  
Sbjct: 60  KDLSFFCRQLAAMLTSGVSLVKALQILQAQSENKKQKQVLLDIYEEVQKGRSFSEAIATK 119

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
               P      F +++S   +  G+L   +  +S         + K++   +       +
Sbjct: 120 PGVFPS----LFVSMVS-AGEASGSLDTIMNRVSEHYAKDSKTQNKIKGAMIYPIVLLVL 174

Query: 133 IGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINFDV 187
           +  +   + T++              P    + G++     I    + +++   +
Sbjct: 175 LLVIMIAMFTMIMPMFRDLAGDTEMPPLSAAIFGISDFM--INQWYILVIVAIAI 227


>gi|312875135|ref|ZP_07735150.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311089341|gb|EFQ47770.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS  I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRTIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    L+GI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIVSLLGIFFI 163


>gi|325911824|ref|ZP_08174228.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 143-D]
 gi|325476330|gb|EGC79492.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 143-D]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++        S  +  +
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK--------SEMVYPA 119

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +   +      +++  ++          A    L+GI  +
Sbjct: 120 VLIVMMVSLLIAMQTFLHSELSSDSSSSDFIFAIIVSLLGIFFI 163


>gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58]
 gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58]
          Length = 375

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 15/131 (11%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD++   + AG  +  A+  +            R        G    E+ + +      
Sbjct: 241 VLDVLAALLSAGRALPAALDDLGRTLPG--APGLRATAALLLWGRDWDEAWAGLDT---- 294

Query: 79  QEVSFFSTVISVQ--SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
            +  +  T   ++   + G   +  LA  +  +R +     +  A  +  +        +
Sbjct: 295 -DPVWIETAARLRPLHRSGMAGARTLAETAAAVRQQTRRADERAAEELAVRL------VM 347

Query: 137 PFCVSTLVYFT 147
           P  +  L  F 
Sbjct: 348 PLGLCLLPAFV 358


>gi|332799372|ref|YP_004460871.1| Type II secretion system F domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697107|gb|AEE91564.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 402

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
               +   + AG+ + +++  I  Q+ +      R +I   +L +   +S++   +  P 
Sbjct: 70  FCRQLAVMLDAGVNILESLTSIAKQTEN---KRLREIIFNLNLHIRRGDSLAEACKNQPY 126

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                F   +    +L GNLS+ L  LS    D      K+++  +     + I     F
Sbjct: 127 VFSEIF-ICLIEAGELSGNLSDILKMLSAYYSDMAKQNEKIKSSMVYPSILSIISL---F 182

Query: 139 CVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V  L     P Y N+      G  L  +   F+L+G  ++
Sbjct: 183 VVVFLTTKVLPVYANIF--SSAGVQLPKITQIFLLLGSNMI 221


>gi|148254080|ref|YP_001238665.1| putative general secretion pathway protein F [Bradyrhizobium sp.
           BTAi1]
 gi|146406253|gb|ABQ34759.1| putative general secretion pathway protein F [Bradyrhizobium sp.
           BTAi1]
          Length = 389

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG  + D++ ++ G +    +R    R+  +   G SL+++++      P   +
Sbjct: 59  LALLLKAGARLEDSLELLAGDADIGRLRPIVNRLRSSILAGESLADALAHHPLQFPAMYL 118

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +          +  G+L   L  L     +R    A  + LS   +   +++ +    + 
Sbjct: 119 ALVRVG-----EASGSLDHVLEVLGA---ERARADAMRRKLSDAMQYPLFVLAAAALVML 170

Query: 142 TLVYFTSPGYMNVL 155
                  P +  VL
Sbjct: 171 FFFLVVLPQFSAVL 184


>gi|77461042|ref|YP_350549.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
 gi|77385045|gb|ABA76558.1| type 4 pilus biogenesis protein PilC [Pseudomonas fluorescens
           Pf0-1]
          Length = 405

 Score = 35.1 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I     +P +R     V +    G S + ++ +  +Y    E+
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFD--EL 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L   L  ++      +++KAK++ 
Sbjct: 133 Y---CNLVDAGEQSGALDTLLERVATYKEKSESLKAKIKK 169


>gi|325294496|ref|YP_004281010.1| type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064944|gb|ADY72951.1| Type II secretion system F domain [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 404

 Score = 35.1 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 27  VRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+ +  A+ +I  Q  +  ++     +      G   S ++S+            + 
Sbjct: 78  IHAGISIVTALRIIKEQIQNKSLKKIIEDIASHIEEGGKFSTALSKYKNIFG----ELYI 133

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           ++I    + G  L E L  L+  L   + ++ K+++
Sbjct: 134 SMIRAAEESG-TLEETLKRLAEYLEKIEKLRGKIKS 168


>gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55]
 gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55]
          Length = 401

 Score = 35.1 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S P+ R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E      I
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373

Query: 133 IGSLPFCVSTLVYF 146
            GSL   +   +Y 
Sbjct: 374 TGSLVGILVVAMYL 387


>gi|150399784|ref|YP_001323551.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150399789|ref|YP_001323556.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150399794|ref|YP_001323561.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150399799|ref|YP_001323566.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012487|gb|ABR54939.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012492|gb|ABR54944.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012497|gb|ABR54949.1| type II secretion system protein [Methanococcus vannielii SB]
 gi|150012502|gb|ABR54954.1| type II secretion system protein [Methanococcus vannielii SB]
          Length = 351

 Score = 35.1 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHL-GLSLSESISRMVRYMP 77
           +  ++  + +G  V +A+  I           EFR +I+  +  G +  E++ R      
Sbjct: 185 ILHLISMLNSGASVQEAIKNIANNPEYGLTSYEFRSIIKDINQGGYNFVEALERAKVRSK 244

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
           +  +      + + +  GG     L NL   +        +  +    +K     +G+L 
Sbjct: 245 IPLLKKLYDQLILAANKGGT-QLLLENLYNEI------VRESLSKIDSSKFQISNLGNLI 297

Query: 138 FCVSTLVYFT 147
           F +  ++ F+
Sbjct: 298 FGIGLIIPFS 307


>gi|319944672|ref|ZP_08018939.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599]
 gi|319742111|gb|EFV94531.1| 3-isopropylmalate dehydrogenase [Lautropia mirabilis ATCC 51599]
          Length = 415

 Score = 35.1 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++   +    V   F  +      G +LS++  +     PL   
Sbjct: 85  LATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTDIKADVETGTALSQAFRK----YPLYFD 140

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           + F  ++    Q G  L + L  L+      + +KAK+++
Sbjct: 141 NLFCNLVGAGEQAGI-LDDLLDRLAMYKEKMEAIKAKIKS 179


>gi|149376815|ref|ZP_01894572.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
 gi|149358936|gb|EDM47403.1| Type II secretory pathway, component PulF [Marinobacter algicola
           DG893]
          Length = 406

 Score = 35.1 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +  +R     V      G S + S+ R  +Y      
Sbjct: 75  MATMMKAGVPLVQSFDIVTDGLENQGLRELIAAVRNDVASGTSFANSLRRHPKY-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L + L  ++  L   + +K KV+ 
Sbjct: 130 DDLYCNLVDSGEKAGALEQMLDRIAMYLEKSETLKKKVRK 169


>gi|50083623|ref|YP_045133.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1]
 gi|49529599|emb|CAG67311.1| type 4 fimbrial assembly protein [Acinetobacter sp. ADP1]
          Length = 408

 Score = 35.1 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFPN---------ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRS 50
           ++ + +KR   F                   +   ++AG+P+  A  ++     +P +R 
Sbjct: 47  IRTIREKRKNIFEGLLKKKVKPLDIAIFTRQLATMMKAGVPLVQAFEIVAEGLENPAMRD 106

Query: 51  EFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  +Y      + F ++I    +  G+L   L  ++    
Sbjct: 107 VVLGLKNEVEGGNTFAGALRKYPQYFD----NLFCSLIE-SGEQSGSLEIMLDRVAVYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSEVLKQKIKK 172


>gi|30142053|gb|AAO17813.1| CfcI [Citrobacter rodentium]
          Length = 324

 Score = 35.1 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRR----VIETQHLGLSLSESISRMVRYMPLQEVS 82
           ++AGLP+ D++  +  +    +   F +    +I       S++     M   +P  E+ 
Sbjct: 2   IKAGLPLYDSLQKLQKEGQALLGKGFSKRLLGLINQMKQETSVAAVFEGM---VPNSEL- 57

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +   ++  G LSE    L  I++    ++ K+    +       +I      ++ 
Sbjct: 58  ----SVITAAERSGRLSEGFFTLVSIIKYNDELRKKIIGALI---FPLIMITLSLIVIAG 110

Query: 143 LVYFTSPGYMNVL 155
                 P + +V+
Sbjct: 111 YSQKVFPAFASVV 123


>gi|315653337|ref|ZP_07906259.1| competence protein [Lactobacillus iners ATCC 55195]
 gi|315489262|gb|EFU78902.1| competence protein [Lactobacillus iners ATCC 55195]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    LIGI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163


>gi|309805401|ref|ZP_07699449.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165286|gb|EFO67521.1| type II secretion system F domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    LIGI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163


>gi|312874397|ref|ZP_07734427.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2052A-d]
 gi|311090009|gb|EFQ48423.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    LIGI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163


>gi|308465854|ref|XP_003095184.1| CRE-PKD-2 protein [Caenorhabditis remanei]
 gi|308246040|gb|EFO89992.1| CRE-PKD-2 protein [Caenorhabditis remanei]
          Length = 715

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 27/127 (21%)

Query: 28  RAGLP---VSDAV---------AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRY 75
           RAG     +++A            I  + ++ +  E  RV E +   +      + + R 
Sbjct: 587 RAGYAEKDINEAFTRFNVTTMTEHIPEKMAEDIADEVARVTEQKRNYMENHRDYANLNRR 646

Query: 76  MPLQEVSFFSTV---------------ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +   + S FS V                 +Q Q GGNL +  A L+  +R+R++ + +  
Sbjct: 647 VDQMQESVFSIVDRIENVNVTLQTIEKQRIQQQDGGNLMDLSALLTSQVRNRESARRQTI 706

Query: 121 ALSMEAK 127
               + K
Sbjct: 707 TSIADKK 713


>gi|262280753|ref|ZP_06058536.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262257653|gb|EEY76388.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 408

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F    + LDI      +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++        F +++    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----KLFCSLVE-SGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSELLKQKIKK 172


>gi|152980730|ref|YP_001354687.1| PilC type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
 gi|151280807|gb|ABR89217.1| PilC type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
          Length = 410

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 13/162 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++   + +P V    + +      G SL+++  +   Y      
Sbjct: 80  LATMMKAGVPLLQSFDIVAKGNDNPSVSKLVQDIRSDVETGTSLNQAFRKFPLYFD---- 135

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  ++    +  G L + L  L+        +KAK++           I+       +
Sbjct: 136 PLFCNLVG-AGEQAGILEDLLTRLAIYKEKTLAIKAKIK---SAMFYPVSILAVAFIVTA 191

Query: 142 TLVYFTSPGYMNVLI----NDPRGHMLLGVAAAFMLIGIMVM 179
            ++ +  P +  V      + P   +++   + FM+    ++
Sbjct: 192 VIMIWVVPAFKEVFTSFGADLPAPTLMVMAMSDFMVANWYII 233


>gi|184153195|ref|YP_001841536.1| hypothetical protein LAR_0540 [Lactobacillus reuteri JCM 1112]
 gi|183224539|dbj|BAG25056.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
          Length = 356

 Score = 35.1 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
             G  V +A+  I    +  +      + +    G S ++S+ +      +++   F  +
Sbjct: 46  SVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-----EVKD-DLFYQL 98

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +   ++  GNL++ L+ + +IL  R+  + K+ +L    +    ++G L   +  L+ F 
Sbjct: 99  LL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILLGMLGVVICGLILFV 153

Query: 148 SPG 150
            P 
Sbjct: 154 FPE 156


>gi|312872427|ref|ZP_07732496.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092009|gb|EFQ50384.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIQKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    LIGI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLIGIFFI 163


>gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 158

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           LD++   +  GLPV  AV  +           ++       +G+    + +        +
Sbjct: 24  LDLVKACLSCGLPVGAAVGAVADSGGSQFVDVWKGTANRLAMGVDSDIAWALCAE---NE 80

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
            +  F+      ++ G  L+  +  LS  +R R    A  QA++   KAS ++   L FC
Sbjct: 81  VLGDFARRARRSARSGAQLAADIGALSMHMRHR----ATDQAVAEAEKASVYVALPLSFC 136

Query: 140 VSTLVYFT 147
                   
Sbjct: 137 FLPAFIAV 144


>gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 293

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGL-PVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           ++   K+  A+F       LD++    RAG      A+          V   +  +    
Sbjct: 139 LRDKAKRARAEFAHAMAAYLDLVA-LRRAGNVSAEQAMEQAAQ-----VGRGWAFLRIQT 192

Query: 60  HLGLSLS------ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
            L  S        ES++R+   + L  +   + ++   +  G ++   L + ++ LR   
Sbjct: 193 ALARSRVDKVPHWESLTRLTAELDLPVLDDLAAIMRQSADDGASVYATLRSRAKNLRTEL 252

Query: 114 NMKAKVQALSMEAKASA 130
                  A S   K +A
Sbjct: 253 LAAQAADANSDSEKMTA 269


>gi|114049093|ref|YP_739643.1| type II secretion system protein [Shewanella sp. MR-7]
 gi|113890535|gb|ABI44586.1| type II secretion system protein [Shewanella sp. MR-7]
          Length = 421

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+S+    RY     V
Sbjct: 90  IATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLRPHRRYFDDLYV 149

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +       +  G+L      ++      + +K+K++ 
Sbjct: 150 DLVA-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184


>gi|16081664|ref|NP_394034.1| flagellar assembly protein J [Thermoplasma acidophilum DSM 1728]
 gi|10639728|emb|CAC11700.1| hypothetical membrane protein [Thermoplasma acidophilum]
          Length = 551

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 1   MKHLIKK--RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIE 57
           +K +I +  R      + P  +        +   + + + ++   +    +R E  +++ 
Sbjct: 61  LKPIIDRDNRKNDINSNIPFFITAFSSLATSDANIIEVLDILSKKEKLGYLRKELEKILN 120

Query: 58  TQH-LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSE 100
                G+ L+E++S + +  P    S F T        G ++ E
Sbjct: 121 LVRNWGMGLAEAMSFVAKRTPSDIFSDFLTRFGHAIDSGQDIQE 164


>gi|88858845|ref|ZP_01133486.1| type II secretion system protein [Pseudoalteromonas tunicata D2]
 gi|88819071|gb|EAR28885.1| type II secretion system protein [Pseudoalteromonas tunicata D2]
          Length = 400

 Score = 35.1 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 15/119 (12%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+  A+ +  G   +  +R E   V +    G +L+ S+ +        + 
Sbjct: 273 LAMMVKAGVPIDKALGLSAGNIKNHQLRREMEIVKQKVKRGSALTPSLKQTSL---YPD- 328

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
            FF +++ V  + G NL      ++   R R+  +      S   K +  I   +   +
Sbjct: 329 -FFISLLEVGEESG-NLERVFNEVAN--RSRQEFE------SWTTKMTTLIEPLMILFM 377


>gi|259501490|ref|ZP_05744392.1| competence protein [Lactobacillus iners DSM 13335]
 gi|302191536|ref|ZP_07267790.1| Type II secretory pathway/competence component [Lactobacillus iners
           AB-1]
 gi|312871496|ref|ZP_07731590.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325913082|ref|ZP_08175453.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 60-B]
 gi|259167008|gb|EEW51503.1| competence protein [Lactobacillus iners DSM 13335]
 gi|311093016|gb|EFQ51366.1| type II secretion system F domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325477638|gb|EGC80779.1| type II secretion system protein F domain protein [Lactobacillus
           iners UPII 60-B]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    L+GI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLLGIFFI 163


>gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
 gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
          Length = 658

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62
           +      +  P  L  I    + G  +S A+  + G+     R EF RV++       +G
Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLAGEKK--YRREFNRVLDEIVKQDSMG 485

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118
           + ++ +  ++     L + S   T + +  + G    + L  L+      ++ ++   ++
Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSR 541

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
           ++A  +    +  ++ +       ++ 
Sbjct: 542 MRAYQVLGILTPILLIATILIAIVIIS 568


>gi|223935104|ref|ZP_03627022.1| type II secretion system protein [bacterium Ellin514]
 gi|223895988|gb|EEF62431.1| type II secretion system protein [bacterium Ellin514]
          Length = 334

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I + V +G+ +  A+ +I         R    RV+E  + G + ++++     ++P  +V
Sbjct: 20  IAQLVASGIGLISALQLIQRNPPSTAFRKHIERVLEHLNHGSTFTDAMRATGSWLPSFDV 79

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +   ++  G L      L     D   ++ +   +  +    A ++    F   
Sbjct: 80  Y-----LIEAAENSGRLDSVFKMLGDYYADTARLQKQ---MLSDLAYPALVLHMAVFLFP 131

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            + YF +      LI    G ++   A  F L+
Sbjct: 132 LIDYFKNGSGALFLIKT-AGVIVPLYAIIFGLL 163


>gi|148543789|ref|YP_001271159.1| type II secretion system protein [Lactobacillus reuteri DSM 20016]
 gi|227363231|ref|ZP_03847363.1| type II secretory pathway/competence component [Lactobacillus
           reuteri MM2-3]
 gi|325682161|ref|ZP_08161679.1| type II secretion system protein [Lactobacillus reuteri MM4-1A]
 gi|148530823|gb|ABQ82822.1| type II secretion system protein [Lactobacillus reuteri DSM 20016]
 gi|227071687|gb|EEI09978.1| type II secretory pathway/competence component [Lactobacillus
           reuteri MM2-3]
 gi|324978805|gb|EGC15754.1| type II secretion system protein [Lactobacillus reuteri MM4-1A]
          Length = 344

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 28  RAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV 87
             G  V +A+  I    +  +      + +    G S ++S+ +      +++   F  +
Sbjct: 34  SVGFSVKEALGFI-KAVNPKLAPWIASIDKRMQKGASFAQSLQQ-----EVKD-DLFYQL 86

Query: 88  ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +   ++  GNL++ L+ + +IL  R+  + K+ +L    +    ++G L   +  L+ F 
Sbjct: 87  LL--AEKHGNLTKTLSEVGKILTARERQRKKLFSLL---QYPLILLGMLGVVICGLILFV 141

Query: 148 SPG 150
            P 
Sbjct: 142 FPE 144


>gi|94309444|ref|YP_582654.1| LuxR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353296|gb|ABF07385.1| transcriptional regulator, LuxR-family [Cupriavidus metallidurans
           CH34]
          Length = 377

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNL-----SEALANLSRILRDRKNM 115
            G++ +  ++ ++   P  E+      +S+Q   G +      + AL  +   LR+   M
Sbjct: 108 AGVAPASMMTCLIDRQPGHEIY-----LSLQRPAGADGFLEADARALDWIIPHLREAVAM 162

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML 164
           + + QA S   + SA ++  LPF V        P   N       G ++
Sbjct: 163 RDRAQAASTHGRVSANLLNQLPFGVIVFTAAGEPLLANAAGEPWIGRLM 211


>gi|124514590|gb|EAY56102.1| putative type IV pilus biosynthesis protein [Leptospirillum
           rubarum]
          Length = 362

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
             L  +   + AG+PV  A   I  QSS  +R+    V+        L E++ R     P
Sbjct: 228 EFLTGLSAMLEAGIPVIRAFDQIRRQSSPYLRARIEPVMRIYKRTGKLGEAMDRAGTGFP 287

Query: 78  LQEVSFFSTVISVQSQLG-GNLSEALANLSRI 108
            +E      ++ +  + G G+L  AL+  SR 
Sbjct: 288 SRE-----IIVRLTIREGYGDLGGALSEFSRD 314


>gi|125973149|ref|YP_001037059.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
           27405]
 gi|256003945|ref|ZP_05428931.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
           2360]
 gi|281417342|ref|ZP_06248362.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
 gi|125713374|gb|ABN51866.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
           27405]
 gi|255992073|gb|EEU02169.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
           2360]
 gi|281408744|gb|EFB39002.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
 gi|316940624|gb|ADU74658.1| hypothetical protein Clo1313_1597 [Clostridium thermocellum DSM
           1313]
          Length = 294

 Score = 35.1 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 1   MKHLIKKRTAKFLDDFPNALDII----VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56
           ++ +I+K+    L DFP+  +++     RS+   + ++D V   +  +++ + +E    +
Sbjct: 137 LEKMIEKKNNNILADFPSFYNMLYYQYARSIN--IYLADVVKDFLPNANEDMAAELEVFL 194

Query: 57  ETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEA--LANLSRILR---- 110
           +    G     ++ ++ + +PL+ +  F  ++  + +   N+S+   L N    LR    
Sbjct: 195 DNIEYGE--EYALKQLKKRVPLRHIIKFCDIMETRLRGYDNISQMTYLKNELYDLRVMSL 252

Query: 111 DRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
           + +  + + +     A+    +I  L   +    YF     + + 
Sbjct: 253 EDELHRREQK----NARMQFVLIVVLAIYIVIYYYFMFVDAIRMF 293


>gi|162146307|ref|YP_001600766.1| general secretion pathway protein F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543690|ref|YP_002275919.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|22128724|gb|AAM92869.1| LsdF [Gluconacetobacter diazotrophicus]
 gi|161784882|emb|CAP54425.1| putative general secretion pathway protein F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531367|gb|ACI51304.1| type II secretion system protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 409

 Score = 35.1 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG  +  A+  +V        R+    V +    G +L  +++R     P    
Sbjct: 79  LAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHAAMARYPGSFP---- 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             +  ++   ++ GG+L+  +  L+ +L   + + A VQ+
Sbjct: 135 RLYIGMVR-AAEAGGDLAPTMDRLATLLERERALAATVQS 173


>gi|49480953|ref|YP_038303.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49332509|gb|AAT63155.1| comG operon protein 2 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 343

 Score = 35.1 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 22/156 (14%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61
            LI K +  F              +  GL V +A+ +++ Q   P  + E  R+      
Sbjct: 204 FLILKHSHYFATQL-------SGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIA 256

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G    E++  ++      E     + I    Q  GNL+  L + S ++ ++   K K   
Sbjct: 257 G----EALQSIIAKSGYYEEEL--SYIITHGQANGNLAIELGDYSDLIMEKMEQKMK--- 307

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                +    I   L  C+  +V       +  +  
Sbjct: 308 -----RMLVIIQPILFTCIGGIVVLMYLAMIMPMFQ 338


>gi|149181786|ref|ZP_01860277.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
 gi|148850527|gb|EDL64686.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
          Length = 403

 Score = 35.1 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
            L      ++AG+ V DA  ++  Q+ S  +      V      G  LS+++++  R   
Sbjct: 67  FLRQFATLLQAGVTVVDATEILSSQTGSKALSKALDEVQLELKDGNPLSDALAKHRRIFE 126

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
                    ++    +  G+L E L +L+     +   K K+ +   
Sbjct: 127 ----PMLINMVR-AGEASGSLDETLESLATHYEKQHMTKQKIISALA 168


>gi|329919944|ref|ZP_08276846.1| type II secretion system protein F domain protein [Lactobacillus
           iners SPIN 1401G]
 gi|328936831|gb|EGG33267.1| type II secretion system protein F domain protein [Lactobacillus
           iners SPIN 1401G]
          Length = 331

 Score = 35.1 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            LD + +S+  G   + ++ ++    ++ V +  +++      G  + +S+  +      
Sbjct: 19  FLDYLQQSLNNGFSFNQSLKILPHVWNEKV-NIIKKLSSNIAQGNDIGQSLVAIG----- 72

Query: 79  QEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGS 135
                FS +I+ Q       GNL E+L+ L++I+R +     K++    E    A +I  
Sbjct: 73  -----FSRMIAQQISFAIKHGNLIESLSQLTKIMRLKNEQIKKIK---SEMAYPAVLIVM 124

Query: 136 LPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
           +   +  +  F      +              A    L+GI  +
Sbjct: 125 MVSLLIAMQTFLHSELSSDSS-----SSDFIFAIIISLLGIFFI 163


>gi|171702766|dbj|BAG16351.1| myosin heavy chain [Coryphaenoides yaquinae]
          Length = 1933

 Score = 35.1 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 5    IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLG 62
             +K+         +A   +  S+RAG  + +  A++  ++   V    E R  +E    G
Sbjct: 1637 AQKQLRNVQGQLKDAQVHLDDSLRAGEDLKEQAAMVERRNGLMVAEIEELRAALEQTERG 1696

Query: 63   LSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +  + +  +   + L      +++++ + +L  +L +    +   +++ +N + K + 
Sbjct: 1697 RKVAEQELMDVSERVGLLHSQN-TSLLNTKKKLESDLVQVQGEVDDTVQEARNAEEKAKK 1755

Query: 122  LSMEAKASA 130
               +A   A
Sbjct: 1756 AITDAAMMA 1764


>gi|260654170|ref|ZP_05859660.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33
           E1]
 gi|260631155|gb|EEX49349.1| type II secretion pathway protein XcpS [Jonquetella anthropi E3_33
           E1]
          Length = 342

 Score = 35.1 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFR-RVIETQHLGLSLSESISRMVRYMP 77
            L  + + +  G+PV  A+  +      PV      R+  +   G S ++++ R      
Sbjct: 15  FLQALSQFLSCGVPVDQALKDL------PVGGALASRLRRSLLSGFSFADALER------ 62

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
             E    +  +    +  G L +AL   + +   R+ ++         A  SA +  +  
Sbjct: 63  ENEFDPVTVALVRAGEAHGALVQALNQAADVRCRRQKLR--------SAAVSASVYPAFV 114

Query: 138 FCVSTLVYFTSPGYMNVLI 156
             ++ +V     G +    
Sbjct: 115 LALAGVVTAVMGGVVLPRF 133


>gi|223984513|ref|ZP_03634645.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM
           12042]
 gi|223963499|gb|EEF67879.1| hypothetical protein HOLDEFILI_01940 [Holdemania filiformis DSM
           12042]
          Length = 395

 Score = 35.1 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 57/157 (36%), Gaps = 9/157 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G+P+ +A+ ++  +S      +   +++E    G SL+ ++ +  +  P    
Sbjct: 67  LSAMLSSGIPLVNALEMLRQKSDKKKMKKLYAQLVEEVRKGSSLTLAMKQCQQAFPP--- 123

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    ++ G L   +  ++        ++ KV   +        ++      + 
Sbjct: 124 --LLIYLVQAGEMNGTLDSVMERMAGHYDKEYKLRNKV---TSALIYPIMLMVVTVAVIL 178

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+    P +++++ +       L + +    I    
Sbjct: 179 ALMTSVVPSFLSMVGDMELPWNTLLLISMSNFIVAYW 215


>gi|119484401|ref|ZP_01619018.1| pilin biogenesis protein [Lyngbya sp. PCC 8106]
 gi|119457875|gb|EAW38998.1| pilin biogenesis protein [Lyngbya sp. PCC 8106]
          Length = 300

 Score = 35.1 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSF 83
              + +G  + + + ++V QS D +     +V     LG  L+ +++   RY       +
Sbjct: 14  ATLLNSGFSIQEIIDLLVQQSDDRLARYLNKVSTAVALGDDLASALAHAPRYFD----RW 69

Query: 84  FSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTL 143
             ++I +     G L E    LS+I       + +    S+        I ++      +
Sbjct: 70  TISLIQIAD-YSGALPEMCYRLSQI------AQREHDCQSLYRSVKVAAITTIVSVSGLI 122

Query: 144 VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIM 177
           +            +     + + V    M +G +
Sbjct: 123 ITLL-------YTSKSPIWVWVLVGIFLMALGFV 149


>gi|260550516|ref|ZP_05824726.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406431|gb|EEW99913.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 408

 Score = 35.1 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+     ++     +P   E    +      G + + ++ +  ++      
Sbjct: 78  LATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQH-----F 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
             F   +    +  G L   L  ++      + +K K++ 
Sbjct: 133 DNFFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKK 172


>gi|213966025|ref|ZP_03394214.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium amycolatum SK46]
 gi|213951320|gb|EEB62713.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium amycolatum SK46]
          Length = 290

 Score = 35.1 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 90  VQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149
           V  Q G +L+  L      L+ R+  +++  A     + +  I+ SLP     +      
Sbjct: 191 VAQQHGLSLAGLLDCARGDLQARQAHRSQTSAALAGPRMTIAILASLPVFGLIMGQAFGA 250

Query: 150 GYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
                L +   G ++L +    +  GI     +I+
Sbjct: 251 SPFEFL-SRGIGGIVLVIGVGLVCAGIEWAVAIID 284


>gi|325262322|ref|ZP_08129059.1| putative general secretion pathway protein F [Clostridium sp. D5]
 gi|324032154|gb|EGB93432.1| putative general secretion pathway protein F [Clostridium sp. D5]
          Length = 399

 Score = 35.1 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 17/178 (9%)

Query: 16  FPNALDIIVRSVRAGLPVSDAVAVIV--GQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
             +    +   V AG+ +  A+ +I          R  +  ++     G+SLSE++    
Sbjct: 59  LADFSRQLSTLVGAGVTLVRALNIIANGEAIKPNERQVYEDMVRQIRQGISLSEAME--- 115

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
                         +   ++  GNL      ++ +      +  K+ +  +  K    +I
Sbjct: 116 --AQNGAFPPLMIYMYRSAESSGNLELVSMQMALMFEKEHRLNGKISSSLVYPKILGVMI 173

Query: 134 GSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFM----------LIGIMVMRL 181
             +   ++  V        + +   P    +L   + FM          L+GI V   
Sbjct: 174 IGVVMVLTKFVMPQLQELFDTMETLPLPTRILNGISDFMQSYWFLAIAALLGIWVGWK 231


>gi|332995714|gb|AEF05769.1| general secretion pathway protein F [Alteromonas sp. SN2]
          Length = 408

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 8/160 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V + LPV +A+  +  Q   P +      +      G  L++++S           
Sbjct: 77  MATLVESALPVEEALLAVAEQCEKPRQKNMMMAVRSKVVEGHGLADALSEFPSV-----F 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L   L  L+     R+  ++++    +      +    +   + 
Sbjct: 132 DDLYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQALIYPSLMLFFAFGIVMLLL 191

Query: 142 TLVYFTSPGYMNVLINDPRG--HMLLGVAAAFMLIGIMVM 179
           T+V     G  + +  D  G   +L+ V+      G++++
Sbjct: 192 TVVVPKIVGQFDHMGQDLPGITQVLISVSTWLQNYGLILL 231


>gi|332702381|ref|ZP_08422469.1| general secretion pathway protein F [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552530|gb|EGJ49574.1| general secretion pathway protein F [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 433

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 16/142 (11%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSL 65
           KR  +   +       +   + AGLP+   +  I+ Q     + +   +V E    G SL
Sbjct: 89  KRVKR--SELAATTRQMSTLLSAGLPLEQVLTAILAQIKGTALYTVLAQVRERVKEGASL 146

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           S ++++                +    +  G L   +A L+        ++ K+      
Sbjct: 147 SSALAQHPGVFGTT-----YATMVQAGEQSGALELVMARLADFAEQEMELRRKI------ 195

Query: 126 AKASAWIIGSLPFCVSTLVYFT 147
              SA     L   V   + F 
Sbjct: 196 --WSAITYPLLMLFVGLGIVFF 215


>gi|325969465|ref|YP_004245657.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708668|gb|ADY02155.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
          Length = 291

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 58/146 (39%), Gaps = 1/146 (0%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLG 62
           + + +   + L + P  + I+   + +G  +S+   ++       +       I  + +G
Sbjct: 59  YRLWRENNEILMEIPTVIRILRDGLGSGQSLSNIAEMLTKVGRGRLSGILAESIMKESMG 118

Query: 63  -LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
            +++ E ++R+ R +    ++  + ++    + G  L E L    +   D  +      +
Sbjct: 119 IITIKEDLTRISRELGNNYLAILAVMLDTAIKSGARLQETLDMAYKSFEDTVSYYLDKAS 178

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFT 147
                 A  +++ ++   ++ +V + 
Sbjct: 179 QVKPYLALIYVVMAIYIVLAGIVIYL 204


>gi|238791187|ref|ZP_04634826.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
 gi|238729320|gb|EEQ20835.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
          Length = 366

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 1  MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQ 59
          + +   +R                  ++AGLP+ +++ ++  +    P R   + + +  
Sbjct: 19 ISYWRGERLVAVTRQL-------ATLLQAGLPLVNSLQLLAKEIDALPWRCLLQDISQQV 71

Query: 60 HLGLSLSESISRMVRYMP 77
            GLSLSE+++R     P
Sbjct: 72 SQGLSLSEAMARYPHTFP 89


>gi|209518478|ref|ZP_03267300.1| type II secretion system protein [Burkholderia sp. H160]
 gi|209501111|gb|EEA01145.1| type II secretion system protein [Burkholderia sp. H160]
          Length = 399

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+ V DA+  + G       +E +  ++     G SLS ++    R  P    
Sbjct: 70  LAALLDAGVGVIDALRTLSGNERREASAEVYGDLLRQLEEGHSLSAALEHASRVFP---- 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    Q GG L+ +L   SR       ++ +V      A   + ++      V 
Sbjct: 126 PILVACVKASEQTGG-LAGSLTRYSRNSALLHELRGRV---VSAAIYPSVLLLVGGAVVL 181

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
            L+ F  P +  +L  +  G  L  ++   M  G MV
Sbjct: 182 FLLGFVVPRFATLL--EQSGRELPLLSQLLMAWGGMV 216


>gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342]
 gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342]
          Length = 401

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRM 72
                   I+  +  AG+     +  +    S P+ R    +       G  + +++SR 
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATLSCPLWRQRLAQARTLIAQGEPIWQALSRC 320

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI 132
             + P          +    +  G L + L NL+   R++ + +A   A  +E      I
Sbjct: 321 GGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIM-LVI 373

Query: 133 IGSLPFCVSTLVYF 146
            GSL   +   +Y 
Sbjct: 374 TGSLVGILVVAMYL 387


>gi|301064212|ref|ZP_07204655.1| type IV fimbrial assembly protein PilC family protein [delta
           proteobacterium NaphS2]
 gi|300441657|gb|EFK05979.1| type IV fimbrial assembly protein PilC family protein [delta
           proteobacterium NaphS2]
          Length = 313

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMP 77
           A   +   + AG+ +  A+  ++ Q S+P  +    +  E+ + G SL+ ++ R  R   
Sbjct: 74  ATRQLAILLGAGITLVAALEAMLMQVSNPAFKRVLAQTKESVNEGNSLAHALGRHPRV-- 131

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
               S     +    +  G+L   L  L+ +    + ++ +++A   
Sbjct: 132 ---FSDVYINLVRAGEASGSLELVLHRLADLSEQEQALRGRLKAAMA 175


>gi|187933106|ref|YP_001887487.1| bacterial type II secretion system protein F [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721259|gb|ACD22480.1| bacterial type II secretion system protein F [Clostridium botulinum
           B str. Eklund 17B]
          Length = 400

 Score = 35.1 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 58/159 (36%), Gaps = 15/159 (9%)

Query: 27  VRAGLPVSDAVAVI-VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
           + AG+P+   + ++    ++  ++   + V +    G  LS+++ +     P        
Sbjct: 75  LDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRKYTEVFP-----GLL 129

Query: 86  TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF-CVSTLV 144
             +    +  GNL   +  ++        +  KV+     A     I+G +    V  ++
Sbjct: 130 VSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVR----NAMIYPIILGLVAITAVVFIL 185

Query: 145 YFTSPGYMNVLIND----PRGHMLLGVAAAFMLIGIMVM 179
            +  P + ++ I      P     L  ++A +     ++
Sbjct: 186 TYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMI 224


>gi|291302163|ref|YP_003513441.1| gas vesicle synthesis GvpL/GvpF [Stackebrandtia nassauensis DSM
           44728]
 gi|290571383|gb|ADD44348.1| Gas vesicle synthesis GvpLGvpF [Stackebrandtia nassauensis DSM
           44728]
          Length = 256

 Score = 35.1 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 32  PVSDAVAVIVGQSSDPVRSEFRRVIET---QHLGLSLSESISRMV-------RYMPLQEV 81
            + +A+     + + P + E  + I +   Q         ++R+           P  E 
Sbjct: 144 SLREAIRDKPPELTQPEQIELGKAIASALAQRRSADTEVLLARLAPLGAEFNVREPNGEY 203

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMK 116
             F   + +  +  G L + L +LS     R N++
Sbjct: 204 VAFRVAVLLHQERTGELGDILDDLSSEWEGRLNLR 238


>gi|114331042|ref|YP_747264.1| type II secretion system protein [Nitrosomonas eutropha C91]
 gi|114308056|gb|ABI59299.1| type II secretion system protein [Nitrosomonas eutropha C91]
          Length = 406

 Score = 35.1 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A  ++    S+  V      +      G SL+ +  +   Y      
Sbjct: 75  LATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSEVETGSSLANAFKKHPLYFDS--- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G L   L  L+      + +K K+++      +   +   +   + 
Sbjct: 132 -LFCN-LVAAGEAAGILDNLLDRLATYKEKIQAIKGKIKSALFYPVSIIVVAFIITAVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V             D     L+ +  +   +    
Sbjct: 190 IFVIPAFKELFQGFGADLPAPTLMVMTISDFFVAYWW 226


>gi|171702768|dbj|BAG16352.1| myosin heavy chain [Coryphaenoides armatus]
          Length = 1933

 Score = 35.1 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 5    IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVR--SEFRRVIETQHLG 62
             +K+         +A   +  S+RAG  + +  A++  ++   V    E R  +E    G
Sbjct: 1637 AQKQLRNVQGQLKDAQVHLDDSLRAGEDLKEQAAMVERRNGLMVAEIEELRAALEQTERG 1696

Query: 63   LSL-SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +  + +  +   + L      +++++ + +L  +L +    +   +++ +N + K + 
Sbjct: 1697 RKVAEQELMDVSERVGLLHSQN-TSLLNTKKKLESDLVQVQGEVDDTVQEARNAEEKAKK 1755

Query: 122  LSMEAKASA 130
               +A   A
Sbjct: 1756 AITDAAMMA 1764


>gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51]
 gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 256

 Score = 35.1 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  K   + P  +  I + ++A   V   +      + +   +E   +        S   
Sbjct: 107 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFAAELDILTADMRS-SSYEA 165

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S  +  + +    G +       L+  ++  +  + K QA+ +  K
Sbjct: 166 ALTRFEARFNSPMLSDITRGL-IGVLRGDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPK 224

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
              +    L   + T +   
Sbjct: 225 IRVFSFAMLMCFLMTYMAII 244


>gi|223940801|ref|ZP_03632634.1| Type II secretory pathway component PulF-like protein [bacterium
           Ellin514]
 gi|223890531|gb|EEF57059.1| Type II secretory pathway component PulF-like protein [bacterium
           Ellin514]
          Length = 386

 Score = 34.7 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L ++  A+F       LD++  ++R G  V + +  I       +   F  +      G+
Sbjct: 40  LKRQERARF------FLDLLDTALREGKRVENVLISISESRDRSMGVRFHLLAAYLETGM 93

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            L E++ ++ R +P Q        IS   ++GG + +    L    +  K+ +++ Q   
Sbjct: 94  RLGEALDKVPRLLPTQ--------ISTMLKVGGQIGDIGKMLPACRQLLKDAQSQTQGAI 145

Query: 124 MEAKASAWIIGSLPFCVSTLV-YFTSPGY 151
                 A++I  +   +  ++  F  P +
Sbjct: 146 NYLVLLAFVITPMGISIFGVLETFVMPQF 174


>gi|30248610|ref|NP_840680.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
 gi|30180205|emb|CAD84507.1| Bacterial type II secretion system protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 406

 Score = 34.7 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 6/157 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++G+P+  A  ++    S+  V      +      G SL+ +  +   Y      
Sbjct: 75  LATMMKSGVPLLQAFDIVGKGHSNRAVGKLLMDIKSDVETGNSLANAFRKHPLYFDS--- 131

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G L   L  L+      + +K K+++      +   +   +   + 
Sbjct: 132 -LFCN-LVAAGEAAGILDSLLDRLATYKEKIQAIKGKIKSALFYPISIIVVAFVITAVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMV 178
             V             D     L+ +A +   +    
Sbjct: 190 IFVIPAFKELFQGFGADLPAPTLMVMAISDFFVDYWW 226


>gi|326794279|ref|YP_004312099.1| general secretion pathway protein F [Marinomonas mediterranea
           MMB-1]
 gi|326545043|gb|ADZ90263.1| general secretion pathway protein F [Marinomonas mediterranea
           MMB-1]
          Length = 400

 Score = 34.7 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + AG+P+ +A++ +  Q +   +RS    +      G  L+ +++   +  P+   
Sbjct: 70  LATLIDAGMPIEEALSGVAQQTTKQRIRSMLLAIRSKVLEGHPLASALAEYPKAFPI--- 126

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   I    + GG L + L  L+      + ++   Q L M     A +       V 
Sbjct: 127 -LFRASIKAGEESGG-LPQVLMQLADY---SERVRGNQQKLQMAMLYPAILTIVAISIVV 181

Query: 142 TLVYFTSPGYMNVL 155
            L+    P  ++V 
Sbjct: 182 FLLGSVMPDIVSVF 195


>gi|241763208|ref|ZP_04761267.1| type II secretion system protein [Acidovorax delafieldii 2AN]
 gi|241367707|gb|EER61973.1| type II secretion system protein [Acidovorax delafieldii 2AN]
          Length = 316

 Score = 34.7 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
             + G + + ++S+  R     E S     +    +  GNL   L  L+  L +R+ ++A
Sbjct: 22  EVNAGATFARALSQHPR-----EFSDIYCAVIGAGEHSGNLGLVLERLADDLEERQALQA 76

Query: 118 KVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAA 170
           K+      A   A +       V  LV +  P   +V     R    L VA  
Sbjct: 77  KLVG---AALYPAIVTLVAIAIVLFLVSYVVPQVASVFAGTKRALPFLTVAML 126


>gi|238897818|ref|YP_002923497.1| component in type IV pilin biogenesis, transmembrane protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465575|gb|ACQ67349.1| component in type IV pilin biogenesis, transmembrane protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 405

 Score = 34.7 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQH 60
            +  K+    F              ++AGLP+ +++ ++    + P+ R   + + +   
Sbjct: 54  SYRQKEYLINFTRQL-------ATLLQAGLPLVNSLQLLAKDMNIPIWRCILQNISQEVS 106

Query: 61  LGLSLSESISRMVR 74
            G   S++I    +
Sbjct: 107 RGEPFSDAIRHYPK 120


>gi|218234987|ref|YP_002369047.1| comG operon protein 2 [Bacillus cereus B4264]
 gi|218162944|gb|ACK62936.1| comG operon protein 2 [Bacillus cereus B4264]
          Length = 343

 Score = 34.7 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +    F++ 
Sbjct: 22  LEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDMLSYLFYA- 80

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                 +  G++S AL   S +L  +   +  +  +        + +  + F    ++ 
Sbjct: 81  ------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLFIFKLILL 133


>gi|83589194|ref|YP_429203.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073]
 gi|83572108|gb|ABC18660.1| hypothetical protein Moth_0326 [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score = 34.7 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 6   KKRTAKFLDDFPNALDII--VRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           KK   K L+  P+ L+ I   R V  G+   +A+A+ +     P+R E +R ++      
Sbjct: 101 KKWQGKVLEGIPSLLNFIPAFREVE-GVTPREALALSLPFIPRPLRDELKRALDKIARTG 159

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
            +  +   +   +    V      ++          +  A+LS  +     +K ++ A +
Sbjct: 160 DVVGAFDELAGKVKHPLVDAVCFRLATSWTTTAG-GDIFADLSDQM---AGLKEEMAARA 215

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPG 150
              K + + +  +   +   + F  PG
Sbjct: 216 TTGKTAIFALVCVLGLIGMALEFGYPG 242


>gi|289549030|ref|YP_003474018.1| type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
 gi|289182647|gb|ADC89891.1| Type II secretion system F domain protein [Thermocrinis albus DSM
           14484]
          Length = 384

 Score = 34.7 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +R+G+P++ AV  +  Q  D +     ++ E+   G ++ E+ +             F  
Sbjct: 66  LRSGMPLAQAVESLALQ-EDKLSGPLLQIKESLEKGNAIPEAFASAGV------FPSFLI 118

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAK 118
            +   ++ G NL + L    + L+    +KAK
Sbjct: 119 EMLRAAERGENLEKILETAGQFLQRMGQIKAK 150


>gi|284166396|ref|YP_003404675.1| hypothetical protein Htur_3137 [Haloterrigena turkmenica DSM 5511]
 gi|284016051|gb|ADB62002.1| protein of unknown function DUF6 transmembrane [Haloterrigena
           turkmenica DSM 5511]
          Length = 331

 Score = 34.7 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             L  + + S      +   +  +    SP    +L  D  G  +L   A    +G +++
Sbjct: 115 AVLLSDERLSRRGAVGMGLGLLGVALVVSPDPAALLGGDAFGRAILFAGAICAALGAVLI 174

Query: 180 RL 181
           R 
Sbjct: 175 RR 176


>gi|238786737|ref|ZP_04630538.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238725105|gb|EEQ16744.1| Type II secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 365

 Score = 34.7 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 31/180 (17%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGLP+ +++ ++  +    P +   + + +    G SLSE I+R     P    
Sbjct: 34  LATLLQAGLPLVNSLQLLAKEMDTLPWQCLLQEISQQVSQGQSLSEVIARYPNTFP---- 89

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEA-KASAWIIGSLPFCV 140
             +S VI++     G ++  L      L   +  + K+Q   ++A K   ++        
Sbjct: 90  RLYSPVIAM-----GEMTGNLEQCCVQLVHHQERQQKLQKKVVKALKYPIFVCVIALTVS 144

Query: 141 STLVYFTSPGY-------------------MNVLINDPRGHMLLGVAAAFMLIGIMVMRL 181
             ++    P +                   +        G   + ++ A + IG + +R 
Sbjct: 145 ILMLVMVLPEFAKIYQSFDTPLPVLTATLLLMSAFITAHG-PFIALSLASLGIGYLYIRK 203


>gi|126666453|ref|ZP_01737432.1| general secretion pathway protein F [Marinobacter sp. ELB17]
 gi|126629254|gb|EAZ99872.1| general secretion pathway protein F [Marinobacter sp. ELB17]
          Length = 403

 Score = 34.7 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +     +G+P+ DA+ +      +D +R E +        G +L  ++ +   + P+  +
Sbjct: 276 LSILTTSGVPLVDAMRIAGEVLGNDYLRQELKDAARKVSEGGALHRALDQSGYFPPMM-L 334

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              ++      +  G L   L   +R+           Q  +++AK +A +    P  + 
Sbjct: 335 HMIASG-----EASGELDSMLERTARM-----------QENTLQAKIAAIVGLFEPLMLL 378

Query: 142 TL 143
            +
Sbjct: 379 LM 380


>gi|226309739|ref|YP_002769633.1| hypothetical protein BBR47_01520 [Brevibacillus brevis NBRC 100599]
 gi|226092687|dbj|BAH41129.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 299

 Score = 34.7 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQ-LGGNLSEALANLSRILRDRKNMKAKVQALSMEA 126
           ++ +  + +       F+T IS   +    ++   L  L+  +  +++ K +  +     
Sbjct: 179 AVEKFAQRLDHPWAFDFATYISSGLEGETEDIQSPLNRLTNEMFVQQDEKHERDSEIYSI 238

Query: 127 KASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAA----AFMLIGIMVMRL 181
             S  I+ ++  C+             +    P G  +L +AA      +L+  +  R 
Sbjct: 239 WISLLIVIAICICLIPYNQGLLQDSYRLYFYTPDGQAILAIAATVWTFSILLAFIWGRR 297


>gi|330831362|ref|YP_004394314.1| GspF family protein [Aeromonas veronii B565]
 gi|328806498|gb|AEB51697.1| GspF family protein [Aeromonas veronii B565]
          Length = 406

 Score = 34.7 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    RAG+P+  A+A +   +   P++     + E    G  LS S+    +       
Sbjct: 74  MYALTRAGIPILRAIAGLEEGTHSKPLKRALHSLGEDLGNGRPLSSSMQAHPKV-----F 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     I    +  G L EA   L+         + +++      +  ++++ ++   + 
Sbjct: 129 SSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKT---AMRYPSFVMIAIGIAMV 185

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 186 ILNIMVIPVFAGMF 199


>gi|113968763|ref|YP_732556.1| type II secretion system protein [Shewanella sp. MR-4]
 gi|113883447|gb|ABI37499.1| type II secretion system protein [Shewanella sp. MR-4]
          Length = 421

 Score = 34.7 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+S+    RY     V
Sbjct: 90  IATMLAAGVPLVTTIEMLGRGHEKQKMRELLGTILSEVQSGIPLSDSLRPHRRYFDDLYV 149

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +       +  G+L      ++      + +K+K++ 
Sbjct: 150 DLVA-----AGEHSGSLDAVFDRIATYREKAEALKSKIKK 184


>gi|294139027|ref|YP_003555005.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12]
 gi|293325496|dbj|BAJ00227.1| type IV pilus biogenesis protein PilC [Shewanella violacea DSS12]
          Length = 423

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+++         Q  
Sbjct: 93  IATMLSAGVPLVTTIEMLGRGHEKVKMRELLGTILNDVQAGIPLSDAL-----RPHRQYF 147

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G+L      ++      + +K+K++       A   +   +   + 
Sbjct: 148 DDLYVDLVAAGEHSGSLDAVFDRVATYREKTEALKSKIKKAMFYPAAVVVVAFGVTALLL 207

Query: 142 TLVYFTSPGYMNVL 155
             V        +  
Sbjct: 208 LFVVPQFEEIFSGF 221


>gi|21234167|ref|NP_639745.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|13620653|emb|CAC36692.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 297

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL-GLSLSESISRMVRYMPLQEV 81
           + R   +G   + A+        + + +  R+V     L G++  +++ ++   + + E+
Sbjct: 168 LARVANSGA--AQALTDTARVGENFIFNRMRQVFHQADLAGVTPWDALKQLGEELDIPEL 225

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           +  +  +++    G  +   L   +R LR       K +A       SA +I  + F V 
Sbjct: 226 TRPADTLALAGD-GAAVYTTLQAQARQLRIALLSDQKAKANEA----SAAMILPVTFGVI 280

Query: 142 TLVYFTSPGYMNVLINDPRG 161
            ++ F     M  L     G
Sbjct: 281 LMITFV----MIPLTITILG 296


>gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
 gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax
           volcanii DS2]
          Length = 639

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 16/189 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQ 59
           +  L   R        P A+  +             +  +    +       FR V+ T 
Sbjct: 140 LGWLATARRENIERTLPGAVRYLHVLSSGSDGPRGMLRRVAETDAYGETAIAFRSVLNTA 199

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL----SRILRDRKNM 115
            L  +++E + R+ R  P +     +  +    +  G  S+AL N     SR+L  R++ 
Sbjct: 200 SLTGNVNEGLRRVARDTPSE--GMLAPFLLKFREHAGQGSDALRNYLRMESRMLGHRQDR 257

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVST----LVYFTSPGYMNVLINDPRGHM----LLGV 167
             +     +E  A  +I+  +   +      ++   +PG    +   P G      ++  
Sbjct: 258 ARERAEGFLELLAELFIVLLVLPSLLVIVLTVMSVIAPGLSAPV-ATPLGQTTTRGVVVY 316

Query: 168 AAAFMLIGI 176
           ++A  ++G+
Sbjct: 317 SSAAFIVGV 325


>gi|227891631|ref|ZP_04009436.1| type II secretory pathway/competence component protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227866547|gb|EEJ73968.1| type II secretory pathway/competence component protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 357

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 25/157 (15%)

Query: 1   MKHLIK--KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIET 58
           +KHL+K  K+             I+   + AG  +  ++  I          EF  V   
Sbjct: 15  LKHLLKDNKKVWSLKKQ-AIFFSILSDLLSAGFSLRQSLISIQNIMP-----EFYSVSHK 68

Query: 59  QH----LGLSLSESI-SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRK 113
                 +G  +S+++   + +    Q        + +  Q G  + +++  L  +L  R 
Sbjct: 69  VKKNLLMGTKISDALKENISKSTYYQ--------LLIAEQHG-EMEKSIKQLGSLLERRV 119

Query: 114 NMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPG 150
             + K+++L +       +   L   +  + ++  P 
Sbjct: 120 EQQNKLKSLMV---YPMILFFMLIIIMLGIKFWLKPT 153


>gi|189424512|ref|YP_001951689.1| type II secretion system protein [Geobacter lovleyi SZ]
 gi|189420771|gb|ACD95169.1| type II secretion system protein [Geobacter lovleyi SZ]
          Length = 405

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 23  IVRSVRAGLP---VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQ 79
           +V  +++G+P   V DA+     ++         +V E    G +LS ++ R  R  P  
Sbjct: 73  LVVLLKSGMPIVPVLDAILEHRRKAGGTFAQVLGQVREDVKGGAALSTALERHGRLFPP- 131

Query: 80  EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFC 139
              + ++V     +  G + + +      L+  + ++ K   L       + ++      
Sbjct: 132 --LYLASV--RAGERTGEVPQTIRRYILFLKRSEELRKK---LISALIYPSILVVVAVLA 184

Query: 140 VSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
           +  L+ +  P + +V  +      LL        
Sbjct: 185 IMLLLIYVVPTFSHVYADSGSQLPLLTRLLISFT 218


>gi|146305723|ref|YP_001186188.1| type II secretion system protein [Pseudomonas mendocina ymp]
 gi|145573924|gb|ABP83456.1| type II secretion system protein [Pseudomonas mendocina ymp]
          Length = 333

 Score = 34.7 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAV-AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
             D  N  D +   + AG+PV DA+      Q +  +R +F  +      G SL+ +   
Sbjct: 193 RADLSNFCDSLGLLLEAGMPVLDALPRACAAQGNARLRRDFANLAPRVAAGQSLARAFDA 252

Query: 72  MV 73
           + 
Sbjct: 253 LA 254


>gi|326204376|ref|ZP_08194234.1| hypothetical protein Cpap_0858 [Clostridium papyrosolvens DSM 2782]
 gi|325985408|gb|EGD46246.1| hypothetical protein Cpap_0858 [Clostridium papyrosolvens DSM 2782]
          Length = 311

 Score = 34.7 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           +  LI     +     P  +D    +      +  A+       +  +     +  ++  
Sbjct: 132 LSLLIDLHKYRMNTQIPKLIDEFRSAFLEHNKIKPALRECSKNVNKNMGRLMLQAADS-- 189

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
                 + +  M   +     S F  ++    + GG+L   L  L+  +  + +++ K 
Sbjct: 190 --SDTQKVLGNMRDRIDNIWFSIFVVMLQNYKENGGDLIGQLYKLNNTMSTQLSIEKKK 246


>gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b]
          Length = 399

 Score = 34.7 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 15  DFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMV 73
                 DI+  + RAGL +  ++  +    +  + R    ++ +    G  L +++ +  
Sbjct: 264 QLTQIFDILQLTQRAGLTLLQSLQAVEVTLTSLLWREAISQLQQHISAGAPLHQALHQHQ 323

Query: 74  RYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWII 133
            + PL      + +I V  ++G  L   L+ L+   R+    +A+  A ++E      I 
Sbjct: 324 LFTPLC-----AQLIKVGEEVGA-LDVMLSRLAEWHRENTLGRAESLAAALEPMMMVVIG 377

Query: 134 GSLPFCVSTL 143
           G +   V  +
Sbjct: 378 GIVGTLVIAM 387


>gi|294054977|ref|YP_003548635.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614310|gb|ADE54465.1| Type II secretion system F domain protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 420

 Score = 34.7 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRM 72
           ++       +   ++AGLP+  A+ V++ Q  +   ++   ++ +    G S S+ +++ 
Sbjct: 78  EELTTFTRQLATLLQAGLPLLRALEVMIRQERNLRFKAVLEQIADQVKSGNSFSDGLAQH 137

Query: 73  VRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
            +         +  +I    + GG L   L+ L+  + 
Sbjct: 138 PKVFD----RLYINMIK-AGEAGGVLDVVLSRLAGFME 170


>gi|196231664|ref|ZP_03130521.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
 gi|196224136|gb|EDY18649.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
          Length = 326

 Score = 34.7 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 11/154 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           + + VR G+P   A+  +   +    R       ++   G ++ E+ + M   +   E  
Sbjct: 15  LAQLVRQGIPFPAALNKLAPGARGDTRRLIEAARKSLASGHTVGEAFTAMPSVVSSLE-- 72

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
              + +    +  G L   L +LS         +             A+ +  L F +  
Sbjct: 73  ---SAVVSAVEKSGQLDRGLRDLSEYFAALDKARRDFVMRC------AYPVFMLHFGILL 123

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGI 176
           L   T             G   L V A   +I  
Sbjct: 124 LNAPTLFTQSAAAYGRQVGTAFLFVYACVAVIAF 157


>gi|306835046|ref|ZP_07468091.1| membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304569071|gb|EFM44591.1| membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 259

 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 57/185 (30%), Gaps = 7/185 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQ 59
           +  +   +  +       ++   +RAG  ++ A++             + +         
Sbjct: 74  MAARTRRRGREALAGYFGVVTADLRAGATLASALSRGAESLPATTPRDMSAALESTATAV 133

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G     ++S         E++    ++ + +Q G  ++         +   +      
Sbjct: 134 ARGAPPHVALSGAHA---DAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQST 190

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A     +A+A ++  LP     +        +  L+    G +LL +       G    
Sbjct: 191 AAGLQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWS 250

Query: 180 RLMIN 184
           R++I 
Sbjct: 251 RVIIR 255


>gi|86159262|ref|YP_466047.1| DNA topoisomerase VI subunit B [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775773|gb|ABC82610.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 604

 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 33  VSDAVAVIVGQSSDPVRSEFRRVIETQH----LGLSLSES 68
           V+ A+  IV +S DP++ EF R+ +        G  L ++
Sbjct: 543 VAQAIGKIVKRSPDPIKREFLRLADQVTEQEGAGEGLDDA 582


>gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
 gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
          Length = 658

 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 56/147 (38%), Gaps = 14/147 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62
           +      +  P  L  I    + G  +S A+  + G+     R EF RV++       +G
Sbjct: 428 REINDIENSLPQFLRDITEFRKIGYDLSRAIKTLAGEKK--YRREFNRVLDEIVKQDSMG 485

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118
           + ++ +  ++     L + S   T + +  + G    + L  L+      ++ ++   ++
Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIEGGAVRPDLLEYLTEFTLNFIQSKREAFSR 541

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVY 145
           ++A  +    +  ++         ++ 
Sbjct: 542 MRAYQVLGILTPILLIVTILIAIVIIS 568


>gi|160942275|ref|ZP_02089584.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434832|gb|EDP12599.1| hypothetical protein CLOBOL_07161 [Clostridium bolteae ATCC
           BAA-613]
          Length = 293

 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 47/144 (32%), Gaps = 2/144 (1%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           L+ K+  +   + P  +  I + ++    V   V      + +   +E   +        
Sbjct: 140 LLAKKRGELEGELPRFVSTIEQELKNSRDVLSIVENYKKNAGEEFANELEILAADMRS-S 198

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
           S   +++R    +    +S     + +    G + +     LS   +  +  + K +A  
Sbjct: 199 SYEAALTRFEARINSPMLSDVVRGL-IGVLRGDDGAMYFQMLSHDFKQMELQRLKKEAQK 257

Query: 124 MEAKASAWIIGSLPFCVSTLVYFT 147
           +  K   +    L   + T +   
Sbjct: 258 IPPKIRVFSFLMLVCFIVTYLAII 281


>gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65]
 gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65]
          Length = 404

 Score = 34.7 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 34/182 (18%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL----GLSLSESISRMVRYMPL 78
           +   + AGLP+ +A+     Q+    +   + +I         G SL+ +++      P 
Sbjct: 74  LSTLIGAGLPIEEALRATADQTE---KRRIKTMIMDVRSKVLEGHSLANALNDFSYAFPQ 130

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
                         +  G+L   L  L+  +   +  + K++  ++       +  ++  
Sbjct: 131 -----LYRATVAAGEHAGHLDTVLNRLADYMERAQENQQKIKLAAVYPIILCIVAIAIVV 185

Query: 139 CVSTLVYFTSPGYMNVL-------------------INDPRGHMLLGVAAAFMLIGIMVM 179
            + T V    P  + V                         G  L  +    ++ GI+ M
Sbjct: 186 GLLTYVV---PDIVEVFVKNGQELPVLTRVMISSSDFLQANGIYLFILLVFAIIGGIVAM 242

Query: 180 RL 181
           + 
Sbjct: 243 KK 244


>gi|330501800|ref|YP_004378669.1| pilin biogenesis protein [Pseudomonas mendocina NK-01]
 gi|328916086|gb|AEB56917.1| pilin biogenesis protein [Pseudomonas mendocina NK-01]
          Length = 406

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I     +P +R     + +    G S + S+ +   +      
Sbjct: 75  MATMMKAGVPLLQSFDIIAEGFDNPNMRKLIDEIKQEVAAGNSFASSLRKKPEF-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L   L  ++      + +KAK++ 
Sbjct: 130 DDLYCNLVDSGEQSGALETLLDRIATYKEKTEALKAKIKK 169


>gi|146305809|ref|YP_001186274.1| type II secretion system protein [Pseudomonas mendocina ymp]
 gi|145574010|gb|ABP83542.1| type II secretion system protein [Pseudomonas mendocina ymp]
          Length = 405

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  +I     +P +R     V +    G S + S+ +   Y    E+
Sbjct: 75  MATMMKAGVPLLQSFDIIGEGFDNPNMRKLIDEVKQEVAAGNSFATSLRKKPEYFD--EL 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
                 +    +  G L   L  ++      + +KAK++ 
Sbjct: 133 Y---CNLVESGEQAGALENLLDRIATYKEKTEALKAKIKK 169


>gi|323493655|ref|ZP_08098776.1| type IV pilin biogenesis protein PilC [Vibrio brasiliensis LMG
           20546]
 gi|323312178|gb|EGA65321.1| type IV pilin biogenesis protein PilC [Vibrio brasiliensis LMG
           20546]
          Length = 418

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +  G+P+   + ++        ++S   R+      GL LS+++            
Sbjct: 87  ITTMLITGMPMISILKLVSAHHQKGEMKSILNRISAKIEAGLPLSQAM-----RASSPHF 141

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L E    ++  +   K+ + K   +      S  ++ +   C  
Sbjct: 142 DALYCDLVATGEQTGKLVEVFERIA--IYREKSQRLKTNIIKALIYPSMVMLTAFVVC-Y 198

Query: 142 TLVYFTSPGYMNVL 155
            ++    P + ++ 
Sbjct: 199 LMLTLVIPQFESIF 212


>gi|305664053|ref|YP_003860341.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
 gi|304378622|gb|ADM28461.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
          Length = 297

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 20  LDIIVRSVRAGLPVSDAVAVI---VGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           L  I     +GL +      I   +G+S      E  R       G+ + +  S + R  
Sbjct: 123 LMAISLLSASGLDIYSVFERIPNILGESYKYFSIEIDRARYMVRAGIPIDKVFSDIARIT 182

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI---- 132
           P Q +    + +S  S++GG+L + +  +      R  ++ +  A ++      ++    
Sbjct: 183 PSQILRELFSGLSSFSRVGGDLGKVVEGVLTRYISRYELEVERIANTLSVYTEIYVAISL 242

Query: 133 IGSLPFCVSTLVYFTSP 149
           +  +      +++   P
Sbjct: 243 LIPVLIGSLAMIFLIYP 259


>gi|300715324|ref|YP_003740127.1| outer membrane protein export (MTB) system (type II secretion
           system) [Erwinia billingiae Eb661]
 gi|299061160|emb|CAX58267.1| outer membrane protein export (MTB) system (Type II secretion
           system) [Erwinia billingiae Eb661]
          Length = 399

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 7   KRTAKFLDDFPN---ALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLG 62
           KR       +         +   ++AGL +S ++ ++  +   P  ++ FR++      G
Sbjct: 49  KRYRAREWQWAQKIAFFRQLATLLKAGLTLSASLNLLAEEHPHPGWQALFRQLENNVAEG 108

Query: 63  LSLSESISRMVRYMP--LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           +  S++++   +  P     + +         +L G + E    L+     ++ ++ KV 
Sbjct: 109 MPFSDALALWPQVFPPLFPALMYVG-------ELTGRIDECCLQLACQQERQQQLQKKV- 160

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             +   +   +I+         ++ F  P +M+V 
Sbjct: 161 --TKALRYPLFILSLALLVSIGMLVFVLPEFMSVY 193


>gi|240141997|ref|YP_002966507.1| putative Type II secretion system protein [Methylobacterium
           extorquens AM1]
 gi|240011941|gb|ACS43166.1| putative Type II secretion system protein [Methylobacterium
           extorquens AM1]
          Length = 411

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 24  VRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
            R +  GL ++DAVA+    +    +      V    H G+ L  +++     +    + 
Sbjct: 80  ARCLDVGLTIADAVAISADGRMGTKLGRTADAVRTALHQGVPLHRAMAEHTPRLTSAAL- 138

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
              +VI V  + G  L+  L++L+  L ++  +++++++  +     A+++ +    V+ 
Sbjct: 139 ---SVIEVGERSG-QLASTLSHLTERLGNQGRLRSEIRSALV---YPAFVVLTAFAVVAI 191

Query: 143 LVYFTSPG 150
           L+    P 
Sbjct: 192 LLQAVVPA 199


>gi|190576223|ref|YP_001974068.1| putative AraC family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014145|emb|CAQ47784.1| putative AraC-family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 275

 Score = 34.7 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 1   MKHLIKKRTAKFLDDFPN-ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ 59
           +++L  +R         + A DI+  ++ AG     A      +          RV E  
Sbjct: 48  VRYLRGRRLTAAAQRLADGAGDILQVALGAGYTTHAAFTRAFNE---QFGQTPERVREQG 104

Query: 60  HLGLSLSESIS---------RMVRYMPLQEVSFFSTVISVQSQLGGNLS 99
             GL+L ++I             R +           +      GG + 
Sbjct: 105 TDGLALVQAIRVDDAPAPCGEAPRLLDTPAFQVAGIGMRHTRDSGGAIP 153


>gi|330944282|gb|EGH46349.1| type II secretion system protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 363

 Score = 34.7 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   +RA +    A+  +   ++  +R           +G +  E++       P 
Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F  V+S       + S A+   S +     ++K   +     +  S  +IG L  
Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            V    Y  +      + +
Sbjct: 345 LVMVGAYSMTGNATQGMTH 363


>gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 290

 Score = 34.7 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSE 67
           +  K   + P  +  I + ++A   V   +      + +   +E   +        S   
Sbjct: 141 KRGKIEQELPRFVATITQELKASRDVLSMLENFKRNAGEDFSAELDILTADMRS-SSYEA 199

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           +++R         +S  +  + +    G +       L+  ++  +  + K QA+ +  K
Sbjct: 200 ALTRFESRFNSPMLSDITRGL-IGVLRGDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPK 258

Query: 128 ASAWIIGSLPFCVSTLVYFT 147
              +    L   + T +   
Sbjct: 259 IRVFSFAMLMCFLMTYMAII 278


>gi|156741387|ref|YP_001431516.1| hypothetical protein Rcas_1403 [Roseiflexus castenholzii DSM 13941]
 gi|156232715|gb|ABU57498.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
          Length = 316

 Score = 34.7 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 6   KKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLS 64
           ++   +     P  +  +   +RAG  +  A+  ++      P+++E+   +E   LG  
Sbjct: 124 QRYATRIDATLPATVGRLEAQLRAGSGLQPAIEKVIADMPASPLKAEWSWFLE--RLGQP 181

Query: 65  LSE--------SISRMVRYMPLQEVSFFSTVISVQ-SQLGGNLSEALANLSRILRDRKNM 115
           L+           + +    P +  + F + + +   Q    L + +      ++     
Sbjct: 182 LAAGALATATMVCAALRAQTPSRRHATFLSHLEIAIDQPHAALVQRVRAAYEAMQASDRR 241

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGH---MLLGVAAAFM 172
            + +     + + +   +  +   ++  ++               G     +L +     
Sbjct: 242 ASMLATELAQMRNTGIALFLINVGITLYLFIVQHERFLTAYRSNIGVGVGAVLALVVGAP 301

Query: 173 LIGIMVM 179
           LIG  ++
Sbjct: 302 LIGGYLL 308


>gi|66044760|ref|YP_234601.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255467|gb|AAY36563.1| type II secretion system protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 363

 Score = 34.7 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   +RA +    A+  +   ++  +R           +G +  E++       P 
Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F  V+S       + S A+   S +     ++K   +     +  S  +IG L  
Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            V    Y  +      + +
Sbjct: 345 LVMVGAYSMTGNATQGMTH 363


>gi|226312375|ref|YP_002772269.1| tyrocidine synthetase II [Brevibacillus brevis NBRC 100599]
 gi|226095323|dbj|BAH43765.1| tyrocidine synthetase II [Brevibacillus brevis NBRC 100599]
          Length = 3589

 Score = 34.7 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 8/136 (5%)

Query: 35   DAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQL 94
             A+ ++  +    +  EF           ++ +    +V   P Q     + V   +   
Sbjct: 2517 QAIEMLTAEEKQLLLVEFNHTDREYTEDQTIQQLFEELVANTPDQT----AIVFEEKQMT 2572

Query: 95   GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGY--- 151
               L+E    L+ +LR++    +++  + +E      I                P Y   
Sbjct: 2573 YEELNERANQLATVLREKGLGPSQIVVMMVERSLEMVIATLAILKAGGAFLPVDPDYPEE 2632

Query: 152  -MNVLINDPRGHMLLG 166
             +  +I D +  ++L 
Sbjct: 2633 RIRYMIEDSQAKLVLT 2648


>gi|229152442|ref|ZP_04280634.1| ComG operon protein 2 [Bacillus cereus m1550]
 gi|228631050|gb|EEK87687.1| ComG operon protein 2 [Bacillus cereus m1550]
          Length = 330

 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 27  VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFST 86
           +  G  +  A+  +  Q     + + +R+IE    G SL +S  ++  +  +    F++ 
Sbjct: 9   LEKGYSLLQALEFLQFQLPVEKKVQLQRMIEELKDGKSLHDSFHQLKFHQDMLSYLFYA- 67

Query: 87  VISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVY 145
                 +  G++S AL   S +L  +   +  +  +        + +  + F    ++ 
Sbjct: 68  ------EQHGDISFALQQGSALLYKKDKYRRDMMKIMQYPMFLMFFLLIMLFIFKLILL 120


>gi|117918875|ref|YP_868067.1| type II secretion system protein [Shewanella sp. ANA-3]
 gi|117611207|gb|ABK46661.1| type II secretion system protein [Shewanella sp. ANA-3]
          Length = 423

 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   + AG+P+   + ++        +R     ++     G+ LS+S+    RY     V
Sbjct: 91  IATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYFDDLYV 150

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              +       +  G+L      ++      + +K+K++ 
Sbjct: 151 DLVA-----AGEHSGSLDVVFDRIATYREKSEALKSKIKK 185


>gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 299

 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           ++    +R  +        LD+ V S+  G  V  A+   V        S+ R  +    
Sbjct: 144 VRKAAAERRRQMRHTLTLILDLTVISLAGGAGVQQALTDAVQAPHGWAASKLRHALRVAQ 203

Query: 61  LGL-SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           L   S  + +  + +++ + +++  +  +S+    G  +  +L
Sbjct: 204 LTRTSPWQHLGDLGQHLQVSDLTELAATLSLAGTEGAKVRASL 246


>gi|169334873|ref|ZP_02862066.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257611|gb|EDS71577.1| hypothetical protein ANASTE_01279 [Anaerofustis stercorihominis DSM
           17244]
          Length = 345

 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQE 80
           ++  ++ +GL + +A+ + +  ++D  +  + + +      G+S S++++ +     + +
Sbjct: 217 VMAMALGSGLEIDEALDLSMETTNDIDMGEKVKSLKGRMSEGMSFSDAVNEVKLLSEI-D 275

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
             F S  +       G++ + +  ++   R  +  K  + +L  + + S  I+ ++    
Sbjct: 276 ARFLSVGVK-----TGSVDKVMKQIAD--RSEEEAKEHINSLISKVEPSLVIVLAVITGA 328

Query: 141 STLVYFTSPGYMNVLIN 157
             L        +  LI 
Sbjct: 329 ILLSVMIPLANIISLIG 345


>gi|121607680|ref|YP_995487.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121552320|gb|ABM56469.1| type II secretion system protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 416

 Score = 34.7 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +RAGL + +A+ V++  S  P V +  + +++    G  LS +++           
Sbjct: 86  LAIMLRAGLALDNALRVLIDMSHKPSVTALVQALLDAVKGGTPLSRALAAHG-----PLF 140

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             F   +    +  G +S  L  L   +  ++ ++  V + +
Sbjct: 141 GDFYINMVRSGEASGQMSAVLDRLVEHMERQRALRDSVISAT 182


>gi|170738264|ref|YP_001779524.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
 gi|169820452|gb|ACA95034.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
          Length = 358

 Score = 34.7 bits (79), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L        AG  V  ++A +   +   +R      +     GL++ E++       P 
Sbjct: 223 FLTAFASMQAAGFTVEKSLAQLADHAKPWLRERIDDTLFGVKSGLNVGEAMRMSGHRFPS 282

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLS----RILRDRKNMKAKVQALSMEAKASAWIIG 134
           QE+      + V +Q  G  +E+L  L+        +R + + +V          A ++G
Sbjct: 283 QEI---VDDLCVYAQYKG-FAESLKTLADEWIETGVERVSAQMRVLNGVAIVAM-AIMLG 337

Query: 135 SLPFCVSTL 143
            L      +
Sbjct: 338 MLIVGFFGI 346


>gi|254293818|ref|YP_003059841.1| general secretion pathway protein F [Hirschia baltica ATCC 49814]
 gi|254042349|gb|ACT59144.1| general secretion pathway protein F [Hirschia baltica ATCC 49814]
          Length = 401

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   + +G PV +A+A +   S  + VRS    V      G  LS+++S           
Sbjct: 70  LAMLISSGTPVEEALAAVGDTSRKNAVRSVLADVRSNVVEGQPLSDAMSS-----QSSAF 124

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
               T I    +  G L   +A L+      + M+ KV
Sbjct: 125 PPLYTSIVAAGESAGALDAVMARLADYQEKSEEMRGKV 162


>gi|254253697|ref|ZP_04947014.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
 gi|124898342|gb|EAY70185.1| Type II secretory pathway component PulF [Burkholderia dolosa
           AUO158]
          Length = 412

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L        AG  V  ++A +   +   +R     ++     GL++ E++       P 
Sbjct: 277 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 336

Query: 79  QEV 81
           +E+
Sbjct: 337 EEI 339


>gi|14590458|ref|NP_142526.1| flagellar assembly protein J [Pyrococcus horikoshii OT3]
 gi|3256965|dbj|BAA29648.1| 573aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 573

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 12  FLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQ-HLGLSLSESI 69
                P  +        + +  +D + V+        + +E ++V      L  SL E+ 
Sbjct: 85  INSKLPYFITYFAVLSTSEIGRTDILRVLAKDPKLGAIANEMKKVYIIVDKLHRSLPEAF 144

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
             + +  P +  + F   ++     G  L + L    + + D      +     ++    
Sbjct: 145 RFLAKRTPSKVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDLDIFKE 204

Query: 130 AWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFML 173
            +    +    +       P    +L     G + L +A   + 
Sbjct: 205 IYESVIISIVFAGAFMIIGP----ILTGQNIGRLALYLAFLILA 244


>gi|88861066|ref|ZP_01135701.1| putative general secretion pathway protein F [Pseudoalteromonas
           tunicata D2]
 gi|88816994|gb|EAR26814.1| putative general secretion pathway protein F [Pseudoalteromonas
           tunicata D2]
          Length = 405

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++ LPV  AV  +  QS  P ++     V      G +L++ +            
Sbjct: 74  LATLIQSALPVEAAVLAVAEQSEKPRLKRMLMAVRSKVVEGYTLADGLGEFPHIFD---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           + F ++++   +  G+L + L  L+     R++M++++     +A     ++      + 
Sbjct: 130 NLFRSMVA-AGEKSGHLDQVLNRLADYTEQRQHMRSQI----TQAMVYPTVLVVFAIGIV 184

Query: 142 TLVY 145
            ++ 
Sbjct: 185 AILL 188


>gi|330897502|gb|EGH28921.1| large subunit of terminal oxygenase component [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 281

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 68  SISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
           SI  M    P+ E+     +  VQ +   N      NL   +  R   ++ V A    A+
Sbjct: 173 SIDNMCDRSPVGELEVAGGIFRVQQRS--NWKVFYENLHDTMHARVTHESSVDA----AR 226

Query: 128 ASAWIIGSLPFCVSTL 143
             A  IG +PF +  +
Sbjct: 227 EQADAIGEMPFELLIM 242


>gi|167771226|ref|ZP_02443279.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
           17241]
 gi|283795333|ref|ZP_06344486.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|167666645|gb|EDS10775.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
           17241]
 gi|291076989|gb|EFE14353.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 310

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRS-VRAGLPVSDAVAVIVGQSS---DPVRSEFRRVI 56
           ++           ++   A+ II  S +R      D +  +        +PV++ F   +
Sbjct: 118 LRSTAASYKKHLNEELETAISIITTSYLRT----EDLIRSVKENLPYINEPVKANFEAFV 173

Query: 57  ETQHL-GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
               L   +++ +I+ +   +P +    +   + +Q Q   ++   L  +++   D + +
Sbjct: 174 YEAELINANITSAINSLKMKIPNRVFHEWCGTL-IQCQSDRSMKNTLPTINQKFSDVRVV 232

Query: 116 KAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVL-INDP 159
           +++++A+    +  A  +  L      L+YF +  + + L    P
Sbjct: 233 QSELEAMMQGPRREAITMIFLVIANVPLLYFLNEDWFHTLIFTTP 277


>gi|114798264|ref|YP_760568.1| general secretion pathway protein F [Hyphomonas neptunium ATCC
           15444]
 gi|114738438|gb|ABI76563.1| general secretion pathway protein F [Hyphomonas neptunium ATCC
           15444]
          Length = 403

 Score = 34.7 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 9/161 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +G+ +  A+    G S   P R     V      G +L+E++    R  P    
Sbjct: 71  LAVLVSSGMTIEQALTAAAGDSDASPQRGLLLGVRSQVMEGSTLAEAMRAAPRAFP-PLF 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
               +      +  G L   L  L+  L     ++  V++  +       +   +   + 
Sbjct: 130 RAVVS----SGESSGRLGLVLDQLAHHLERSYRLRTLVRSALIYPAILGIMATLMVTALM 185

Query: 142 TLVYFTSPGYMNVLIND---PRGHMLLGVAAAFMLIGIMVM 179
             V         +L  D   P    ++G++      G+ V+
Sbjct: 186 VWVVPKLVEQFAMLGADELPPLTRFVIGLSGFVRDWGLFVL 226


>gi|327412695|emb|CAX67691.1| putative Type IV pilus integral membrane protein (PilR) [Yersinia
           enterocolitica]
          Length = 369

 Score = 34.7 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 28/153 (18%)

Query: 11  KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD------PVRSEFRRVIETQH---L 61
           ++   F +AL  +   +  G P+  A+ +I    +D      P        +E+      
Sbjct: 30  RYRLQFYDALRFL---LENGNPLGVALQMIAEVHTDFGKHWHPYGDLVDDCLESLSDNGA 86

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G +    ++      PL+E       +       G L EAL    +++  R+ +      
Sbjct: 87  GRTFENVLAAWG---PLEE-----AALISAGMRSGKLPEALLQAGKLVEARRRI------ 132

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154
           L++ +K S +    L FC+   +   +  Y+  
Sbjct: 133 LTLVSKMSLY--PLLLFCLGGGMLVINGAYLIP 163


>gi|326789701|ref|YP_004307522.1| Mg2 transporter protein CorA family protein [Clostridium
           lentocellum DSM 5427]
 gi|326540465|gb|ADZ82324.1| Mg2 transporter protein CorA family protein [Clostridium
           lentocellum DSM 5427]
          Length = 304

 Score = 34.7 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVI-SVQSQLGGNLSEALANLSRILRDRKN 114
            +   +G  L E+ +       L+   FF+  +  +QS +       L   +  +R+   
Sbjct: 179 SQLVEVGEVLGENENDFFNEHNLRLFDFFTRRVSRLQSNVQ-----MLREYALQVREEYQ 233

Query: 115 MKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
            +  ++  +     +      LP  +    Y  +  YM  L       +++ ++ A + +
Sbjct: 234 SQIDIKQNNTMRILTVVTTIFLPLTLIAGWYGMNFTYMPELRWKYGYPLVIAISLAIICL 293

Query: 175 GIMVMRL 181
            I + + 
Sbjct: 294 SIWICKK 300


>gi|325124302|gb|ADY83825.1| type 4 fimbrial assembly protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 408

 Score = 34.3 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F    + LDI      +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++      + F +++    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSELLKQKIKK 172


>gi|262066832|ref|ZP_06026444.1| general secretion pathway protein F [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379444|gb|EFE86962.1| general secretion pathway protein F [Fusobacterium periodonticum
           ATCC 33693]
          Length = 345

 Score = 34.3 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +++GL  + A+ +I+ +  +   +   +++ +   +G ++ +S            +
Sbjct: 15  LALLIKSGLTFTKAIEIILKEEKNKKFKDILKKIHKNLTIGKNIYDSFKPFENTFGSTYL 74

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                      +L GN+ E+L ++S+ L    ++  + +   +       +I      VS
Sbjct: 75  YILKIG-----ELSGNIVESLEDISKSL--DFDLSRRKKLGGILI-YPIVVICLTFLIVS 126

Query: 142 TLVYFTSPGYMNVL 155
            L+ +  P ++ + 
Sbjct: 127 FLLIYILPSFITIF 140


>gi|295697644|ref|YP_003590882.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
 gi|295413246|gb|ADG07738.1| Type II secretion system F domain protein [Bacillus tusciae DSM
           2912]
          Length = 566

 Score = 34.3 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 9/144 (6%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISR 71
           +             VRAG+P + +V ++  QS +  ++     V      G +L  + + 
Sbjct: 224 VQTLAVFCRQFATLVRAGVPAARSVEILAAQSENRTLKRTLEAVAAEVRQGTALQRAFAA 283

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
                P    + F  ++    +  G L   L   +      +  + K+   +      A 
Sbjct: 284 HPSVFP----ALFIHMVG-AGEFSGQLDLMLDRAALFYERERATRQKI---TSALMYPAV 335

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVL 155
           ++         L+    P +    
Sbjct: 336 VLTIALGVSVFLLTSVIPTFAQTF 359


>gi|312139375|ref|YP_004006711.1| fad-dependent oxidoreductase [Rhodococcus equi 103S]
 gi|311888714|emb|CBH48026.1| putative FAD-dependent oxidoreductase [Rhodococcus equi 103S]
          Length = 542

 Score = 34.3 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
          +  A+ V   QS  P   E   ++    LG  L  ++  +
Sbjct: 39 LQQALGVSAEQSPPP--EESDAIVRESALGAPLVHALEDL 76


>gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 402

 Score = 34.3 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +R+G+ VSD + ++  Q SD  +R E  R+      G SLSE++      +P    
Sbjct: 71  MAMVLRSGMGVSDGLELVSRQVSDRLLRREALRLYREVLSGRSLSEAMMAEDSLIPGLLA 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWI-IGSLPFCV 140
              +T      +  GNL + L N+S+  + R   + +V+   +       + IG L +  
Sbjct: 131 RMVATG-----EASGNLEQILHNMSQYYQQRYETEKRVKGALIYPALLMVVGIGLLAYVF 185

Query: 141 STLV 144
           + L+
Sbjct: 186 AFLI 189


>gi|325672744|ref|ZP_08152440.1| alkylglycerone-phosphate synthase [Rhodococcus equi ATCC 33707]
 gi|325556621|gb|EGD26287.1| alkylglycerone-phosphate synthase [Rhodococcus equi ATCC 33707]
          Length = 542

 Score = 34.3 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 33 VSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
          +  A+ V   QS  P   E   ++    LG  L  ++  +
Sbjct: 39 LQQALGVSAEQSPPP--EESDAIVRESALGAPLVHALEDL 76


>gi|312114555|ref|YP_004012151.1| type II secretion system F domain protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219684|gb|ADP71052.1| Type II secretion system F domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 396

 Score = 34.3 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AGL + +++A++  +   P +    R V+   + G SL E +S+         +
Sbjct: 66  LTVLLQAGLSIPESLALLAVRPGQPRLEKALRLVLSEVNRGGSLREGMSKAQGAFDADYI 125

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL---------SMEAKASAWI 132
           +   T      +  G L   L         +  M+A+V            ++ A  +   
Sbjct: 126 ALVGTG-----EEAGALPNCLQRYQNYADLKMKMRAQVLKTMTYPAALLATLSAVLTFLF 180

Query: 133 IGSLPFCVSTLVYFTS--PGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
           +  +P  +       S  P    +LI   R    + +     +IG+ ++  +
Sbjct: 181 LEVIPNFIGMYRELGSELPAPTQILIAVERHFPAIAIGITAAVIGVWILDRI 232


>gi|294338834|emb|CAZ87168.1| type 4 fimbrial assembly protein [Thiomonas sp. 3As]
          Length = 406

 Score = 34.3 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 4/157 (2%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   ++AG+P+  +  ++     +P      R+I      +    S+S   R  P +   
Sbjct: 75  MSTMIKAGVPLLQSFDIVGRGHPNP---NMARLIMDIRGDVETGTSLSNAFRKHP-KYFD 130

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G L   L  L+        +++K+++      A   +   +   +  
Sbjct: 131 ALYCNLVEAGETAGMLELVLDRLATYQEKSLAIRSKIKSALTYPIAVMVVAFVVVSIIML 190

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V        +          L+ VA +   +    +
Sbjct: 191 FVVPVFTDVFSQFGASLPAPTLMVVAISNFFVHYWYI 227


>gi|293610129|ref|ZP_06692430.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827361|gb|EFF85725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 408

 Score = 34.3 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFP---NALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F    + LDI      +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++      + F +++    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSELLKQKIKK 172


>gi|119183920|ref|XP_001242935.1| hypothetical protein CIMG_06831 [Coccidioides immitis RS]
          Length = 1151

 Score = 34.3 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 21  DIIVRSVRAGLPVSDAVAVI-------VGQSSDPVRSEFRRVIETQHLGLSLSESISRMV 73
           D +V   R GL + +    +       V ++ D   S F R +       SL E++S   
Sbjct: 439 DSVVAESRGGLSIEEFFEFLRSAQGEDVDKNRDYWASVFERFVRRSRRSQSLPEALSSSA 498

Query: 74  RYMPLQEVSFFSTV 87
             M L   S F   
Sbjct: 499 ARMDLDAFSSFLIS 512


>gi|330900248|gb|EGH31667.1| type II secretion system protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 363

 Score = 34.3 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   +RA +    A+  +   ++  +R           +G +  E++       P 
Sbjct: 230 FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 289

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F  V+S       + S A+   S +     ++K   +     +  S  +IG L  
Sbjct: 290 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 344

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            V    Y  +      + +
Sbjct: 345 LVMVGAYSMTGNATQGMTH 363


>gi|115360619|ref|YP_777756.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|172064943|ref|YP_001815655.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
 gi|115285947|gb|ABI91422.1| type II secretion system protein [Burkholderia ambifaria AMMD]
 gi|171997185|gb|ACB68102.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
          Length = 358

 Score = 34.3 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L        AG  V  ++A +   +   +R     ++     GL++ E++       P 
Sbjct: 223 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 282

Query: 79  QEV 81
           +E+
Sbjct: 283 EEI 285


>gi|260913756|ref|ZP_05920232.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC
           43325]
 gi|260632295|gb|EEX50470.1| type IV pilus assembly protein PilC [Pasteurella dagmatis ATCC
           43325]
          Length = 404

 Score = 34.3 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 18  NALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYM 76
           +   ++   +++ LP+ +A+  ++  +++  +    R ++     G++ S +++ +  YM
Sbjct: 62  DLFTLLATLLQSTLPLKEALQALLQNTTNIQLNQWLRNLLMQLESGVAFSVALASLGSYM 121

Query: 77  PLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSL 136
             QE+           ++ G L++    +++  +    ++ KVQ + +     + I+G  
Sbjct: 122 NYQELQLIKVG-----EMTGRLAQVCQQIAQYRQQSLVLQRKVQKIML---YPSIIVGIS 173

Query: 137 PFCVSTLVYFTSPGY 151
                 L+ F  P +
Sbjct: 174 LLLTLMLLLFIVPEF 188


>gi|254409511|ref|ZP_05023292.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183508|gb|EDX78491.1| Bacterial type II secretion system protein F domain [Microcoleus
           chthonoplastes PCC 7420]
          Length = 312

 Score = 34.3 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/171 (8%), Positives = 56/171 (32%), Gaps = 16/171 (9%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGL 63
           +  ++ AK             + + +G+ +  ++ ++    +  V+   ++V      G 
Sbjct: 1   MTNRQNAKIFSQL-------AKLLNSGINLQQSLTLVGNDLNPAVKRYLQKVSLAVGSGQ 53

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALS 123
             + +++   R       + ++  +   ++  G+L +    L+    D +    + +   
Sbjct: 54  DFATALT-CERRY----FNRWTISLIRLAEYSGSLPQTCQILAE---DAETQARQERLYG 105

Query: 124 MEAKASAWIIGSLPFCVSTLVYFTSPGYMNV-LINDPRGHMLLGVAAAFML 173
              +++   I       + +    + G +            LL      ++
Sbjct: 106 SVKRSAIATIWGFLVLTAAIFNPNATGIIKPEFWLRGLAIALLLWVMIVLV 156


>gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
           17982]
          Length = 425

 Score = 34.3 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 14/172 (8%)

Query: 23  IVRSVRAGLPVSDAVAVI-----------VGQSSDPVRSEFRRVIETQHLGLSLSESISR 71
           +   +RAG P S A  +            V  S   V  E+ R          +  +   
Sbjct: 111 VATRLRAGAPTSLAWGLALARIDAGGSVGVDDSYPAVLDEWARAPTRWRSLRRVERAPGV 170

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
               +     +  +        LG  L++ L  +   + D + ++   +  +     SA 
Sbjct: 171 AASRV---SAASVALACRFSHDLGAPLADVLDAIGSAIDDAQALEEARRVAAAGPLMSAR 227

Query: 132 IIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMI 183
           ++ +LP                  +    G M   V  A    G+   R ++
Sbjct: 228 VLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVAAWAAGVASCRRIL 279


>gi|332298453|ref|YP_004440375.1| exonuclease [Treponema brennaborense DSM 12168]
 gi|332181556|gb|AEE17244.1| exonuclease [Treponema brennaborense DSM 12168]
          Length = 1030

 Score = 34.3 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
            +   ++  ALD   R       +  A+  +  +  +P+R+EF R            +S+
Sbjct: 598 RQIESEYAGALDAFRRKRE----LQGALRRVQDEL-EPLRTEFTR------------QSV 640

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
           +          +   +  +  Q+Q  G  ++  A  +  +R
Sbjct: 641 ALAQTRTESDALRTLAAAVMQQAQKAGYTADTAAKTAESVR 681


>gi|186477404|ref|YP_001858874.1| type II secretion system protein [Burkholderia phymatum STM815]
 gi|184193863|gb|ACC71828.1| type II secretion system protein [Burkholderia phymatum STM815]
          Length = 407

 Score = 34.3 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVR-----SEFRRVIETQHLGLSLSESISRMVRYMP 77
           +   +RAGLP++ A+ ++   S    R        R +      G+S S +++      P
Sbjct: 73  LSGLLRAGLPLASALELLAQASKHNARTKGMPRIVRALARDITAGVSFSSALA----RHP 128

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
            Q  + +  ++ V  +  G L   LA L+         +AKV+A        A ++ +L 
Sbjct: 129 AQFNALYCQLVEV-GEASGTLPAVLARLADDRERAAAQRAKVRAALTYPV--AVLLLALS 185

Query: 138 FCVSTLVYFT 147
              + LV+  
Sbjct: 186 ITTALLVWVV 195


>gi|124265701|ref|YP_001019705.1| pilus tip-associated protein [Methylibium petroleiphilum PM1]
 gi|124258476|gb|ABM93470.1| Pilus tip-associated protein [Methylibium petroleiphilum PM1]
          Length = 408

 Score = 34.3 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   +RAG+P+  +  ++   S++P V      +      G SLS +  +   Y      
Sbjct: 78  IATMMRAGVPLLQSFDIVARGSTNPRVTKLLTDIRSDIETGTSLSSAFRKHPLY-----F 132

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+        +K K+++  +   A   +   +   + 
Sbjct: 133 DALYCNLVEAGEAAGILETLLERLATYQEKTLEIKRKIKSALIYPVAVLVVAFVVVAVIM 192

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  ++ + + +    +
Sbjct: 193 IFVIPAFKEVFTSFGADLPAPTLFVMSMSEIFVSYWWL 230


>gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 394

 Score = 34.3 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 17  PNALDIIVRSVRAGLPVSDAVAVIVG--QSSDPVR------SEFRRVIETQHLGLSLSES 68
           P  L+  V  + AG+    A   I    +    +        E    +     G S  E 
Sbjct: 249 PEILNKFVLFLGAGMTAKAAWQKISSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKEC 308

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGN-LSEALANLSRILRDRKNMKAKVQALSMEAK 127
                +         F  ++S   + G   L++ L   +    + +   AK     +  K
Sbjct: 309 YEHFGKRCEAVCYMRFGALLSQNLKRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTK 368

Query: 128 ASAWIIGS 135
             A +   
Sbjct: 369 LLAPMFFM 376


>gi|117928527|ref|YP_873078.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
 gi|117648990|gb|ABK53092.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
          Length = 409

 Score = 34.3 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + +GL +  A+ ++  Q+    ++     V      G SLS ++S+  R  P     
Sbjct: 76  ATMINSGLSLLRALTILREQTQSKALQKVLTEVRNDVETGSSLSAAMSKHPRAFP----P 131

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
               +I    ++GG L   L  ++        +++KV+           ++      V  
Sbjct: 132 LMVNMIR-AGEVGGFLDSVLLEIAANYEAEVKLRSKVK---SAMTYPVVVLCISLLAVLG 187

Query: 143 LVYFTSPGYMNVLINDPRGHM 163
           ++ F  P     +     G +
Sbjct: 188 MLTFVVP-VFAKMFKQLGGKL 207


>gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
           27750]
 gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
           27750]
          Length = 425

 Score = 34.3 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMP 77
                   ++AG+ V +A+ ++  Q+ +  ++            G +LS+S+ +      
Sbjct: 90  FCRQFASILKAGVSVINALEMLAEQTENKKLKEAIVNTQSNVEKGENLSDSMRQ------ 143

Query: 78  LQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLP 137
                     +    +  G+L  +L  ++        +   V+   M       ++  + 
Sbjct: 144 NDAFPSILIDMVRAGEASGSLENSLTRMAIQFEKDAKLNGIVKKAMM---YPIVLLCVMI 200

Query: 138 FCVSTLVYFTSPGYMNVL 155
             +  ++ F  P +M + 
Sbjct: 201 GVIIVMLTFVIPSFMTMF 218


>gi|293374829|ref|ZP_06621132.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909]
 gi|292646551|gb|EFF64558.1| hypothetical protein CUW_2519 [Turicibacter sanguinis PC909]
          Length = 268

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 4   LIKKRT--AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           L KK+             + ++ + V A   + +A+  I      P++ +  ++I +  +
Sbjct: 79  LRKKKLYNTHIRKQINLYMSLVSQMVSAKQTILNALITIAPNLQSPIKEDVYQLIRSIEV 138

Query: 62  GLSLSESISRMVRYMPLQE-VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
                +++ +          +  F   + +  + GGN  + L+ L       +    +  
Sbjct: 139 DGYPYDALDKFSDKYSNDTYLRIFHNQLKLTFRHGGN-EDILSELVDEHSSLEVYVDEYS 197

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHML-LGVAAAFMLIGIMVM 179
                 K   +I  +       +            ++   G ++  G+     LI ++V 
Sbjct: 198 KKKGFYKNYTYIFMAYLLIFPIMFVIFQGSMYENYVSSTFGLIVSSGIYIITTLIAMIVE 257

Query: 180 RL 181
           + 
Sbjct: 258 KK 259


>gi|237801972|ref|ZP_04590433.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024830|gb|EGI04886.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 209

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L  I   +RA +    A+  +   ++  +R           +G +  E++       P 
Sbjct: 76  FLLNIAVMLRANIDPLGALDTLKRGANPWLRERLEAAHYGVRMGKNFGEALDLSGHEFPD 135

Query: 79  QEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPF 138
            E   F  V+S       + S A+   S +     ++K   +     +  S  +IG L  
Sbjct: 136 HEAIQFLIVLS----TTQSFSAAVHRYS-LRWLEISLKQVERYAKTLSLVSMVLIGLLMI 190

Query: 139 CVSTLVYFTSPGYMNVLIN 157
            V    Y  +      + +
Sbjct: 191 LVMVGAYSMTGNATQGMTH 209


>gi|170698375|ref|ZP_02889449.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
 gi|170136714|gb|EDT04968.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
          Length = 358

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%)

Query: 19  ALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPL 78
            L        AG  V  ++A +   +   +R     ++     GL++ E++       P 
Sbjct: 223 FLVAFSSLQAAGFTVERSLARLATDAKPWLRQRIDDMLFGVKSGLNVGEAMKNAGYRFPS 282

Query: 79  QEV 81
           +E+
Sbjct: 283 EEI 285


>gi|331007278|ref|ZP_08330481.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC1989]
 gi|330418927|gb|EGG93390.1| Type IV fimbrial assembly protein PilC [gamma proteobacterium
           IMCC1989]
          Length = 404

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQEV 81
           +   V+AG+P+  +  ++   S +P   E    I      G S + ++ +  +Y      
Sbjct: 74  LATMVKAGVPLVQSFDIVADGSDNPNMKELILSIRTDVASGTSFAATLKKHPKYFD---- 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F  +I+   +  G L   L  L+      + +KAK++        +  +I  +   + 
Sbjct: 130 ELFCNLIA-AGEQSGALETLLDRLAVYKEKTEILKAKIKKALTY-PIAIVLISLVVTGIL 187

Query: 142 TL 143
            +
Sbjct: 188 LI 189


>gi|294142970|ref|YP_003558948.1| general secretion pathway protein F [Shewanella violacea DSS12]
 gi|293329439|dbj|BAJ04170.1| general secretion pathway protein F [Shewanella violacea DSS12]
          Length = 389

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V AGLP+ +A+  +  Q   D + S    V      G SL++S++           
Sbjct: 58  IATLVAAGLPIEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHI-----F 112

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 +    +  G+L   L  L+     R+ +K+K+ QA+      +   IG +   +
Sbjct: 113 DDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVVAIGVIGILL 172

Query: 141 STLV 144
           + +V
Sbjct: 173 AAVV 176


>gi|117620490|ref|YP_854922.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561897|gb|ABK38845.1| GspF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 406

 Score = 34.3 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +    RAG+P+  A+A +   +   P++     + E    G  LS S+    R       
Sbjct: 74  MYALTRAGIPILRAIAGLEESAHSKPLKRALHALGEDLGNGRPLSSSMQAHPRV-----F 128

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
           S     I    +  G L EA   L+         + +++      +  ++++ ++   + 
Sbjct: 129 SSLFVAIIHVGENTGQLEEAFLQLANYFELELETRKRIKT---AMRYPSFVLIAIGIAMV 185

Query: 142 TLVYFTSPGYMNVL 155
            L     P +  + 
Sbjct: 186 ILNIMVIPVFAGMF 199


>gi|261250241|ref|ZP_05942817.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP
           102891]
 gi|260939357|gb|EEX95343.1| type 4 fimbrial assembly protein PilC [Vibrio orientalis CIP
           102891]
          Length = 408

 Score = 34.3 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 14/137 (10%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   +  G+P+  A+ ++        + S   ++ +    G  +S+ +     +     +
Sbjct: 77  LATMLATGVPIIHALKLVADNQRKAEMTSILAQISKGIESGTPISKVMHATSSHFDRLYI 136

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
              +T      +  GNL++A   ++      + ++AKV          A I   +    +
Sbjct: 137 DLVATG-----EQTGNLADAFERIASYREKSERLRAKV--------IKALIYPCMVVTTA 183

Query: 142 TLVYFTSPGYMNVLIND 158
            +V +     +      
Sbjct: 184 LVVSYLMLTMVIPQFES 200


>gi|227502474|ref|ZP_03932523.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium accolens ATCC 49725]
 gi|227076843|gb|EEI14806.1| bacterial type II secretion system protein F domain protein
           [Corynebacterium accolens ATCC 49725]
          Length = 259

 Score = 34.3 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 57/185 (30%), Gaps = 7/185 (3%)

Query: 4   LIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD----PVRSEFRRVIETQ 59
           ++ +   +  +       ++   +RAG  ++ A+              + +         
Sbjct: 74  MVARTRRRGREALAGYFGVVTADLRAGATLASALTRGAESLPATTPRDMSAALESTATAV 133

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G     ++S         E++    ++ + +Q G  ++         +   +      
Sbjct: 134 ARGAPPHVALSGAHA---DAELTRLGHLLELSTQHGIGVASLFEQAQSRMDALRRHHQST 190

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            A     +A+A ++  LP     +        +  L+    G +LL +       G    
Sbjct: 191 AAGLQGPQATATVLACLPIAGIAMGGAMGANSLGFLLGGGLGGILLVIGVGLACGGFAWS 250

Query: 180 RLMIN 184
           R++I 
Sbjct: 251 RVIIR 255


>gi|288553373|ref|YP_003425308.1| late competence protein ComGB [Bacillus pseudofirmus OF4]
 gi|288544533|gb|ADC48416.1| late competence protein ComGB [Bacillus pseudofirmus OF4]
          Length = 354

 Score = 34.3 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 7/138 (5%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           ++ + ++ G  +  A++ ++      V     +V  +   G  + +S S++     +   
Sbjct: 27  LLGKLLKQGYSMDHALSFMLIHLPKEVSVPLTQVQASLKNGQEIHQSFSQLPVPRDVISF 86

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
            +F        Q  G +S+       +L  R+  K ++  L        WI   +   + 
Sbjct: 87  LYF-------YQYHGQVSDGFIQAGTLLEKRQVTKHQMYKLLRYPVMLVWICFVVLIVLH 139

Query: 142 TLVYFTSPGYMNVLINDP 159
             V          +  DP
Sbjct: 140 LFVVPHFNSLFETMQGDP 157


>gi|327542655|gb|EGF29127.1| membrane protein containing Type II secretion system F domain
           [Rhodopirellula baltica WH47]
          Length = 350

 Score = 34.3 bits (78), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 14  DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRS--EFRRVIETQHLGLSLSESISR 71
           +     L+ +     +G  +   +A +   +   +    EF RV      G S S +++ 
Sbjct: 21  ESLAMLLEEVSAMAASGRSLVSGLAGLNDVALGRLGRAAEFVRV--RVKHGQSPSVAMAS 78

Query: 72  MVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAW 131
           +               + + ++ G   +  +    R++R R++ + +V   ++    +  
Sbjct: 79  LSLPYQTP----IRIAMQIMAETGSTAA--IHETVRLIRQREDQRRQVWLTAINPLLNML 132

Query: 132 IIGSLPFCVSTLVYFT 147
           +   + F V   +  +
Sbjct: 133 VAAVVAFFVLPWILIS 148


>gi|28378845|ref|NP_785737.1| ComG operon protein 2 [Lactobacillus plantarum WCFS1]
 gi|254557051|ref|YP_003063468.1| ComG operon protein 2 [Lactobacillus plantarum JDM1]
 gi|308181045|ref|YP_003925173.1| ComG operon protein 2 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271682|emb|CAD64588.1| ComG operon protein 2 [Lactobacillus plantarum WCFS1]
 gi|254045978|gb|ACT62771.1| ComG operon protein 2 [Lactobacillus plantarum JDM1]
 gi|308046536|gb|ADN99079.1| ComG operon protein 2 [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 349

 Score = 34.3 bits (78), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 36/201 (17%)

Query: 1   MKHLIKKRTAKFLDDFPNALDI-----IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           M+  I  R  K     P A+       +   +  G     A    +     P     +  
Sbjct: 12  MRRPINLRKRK---RLPIAMQAKLFETLADLLGNGFSFQQAFQFTLD-VEGPAFQSLQPA 67

Query: 56  IETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNM 115
           +     G  LS ++      + +     F        +  G L   L    +++R R   
Sbjct: 68  LGRLAAGDDLSMALRPY---IAVDLYYQFLIA-----ETHGELRRTLMQAGQLMRARAEQ 119

Query: 116 KAKVQAL------------SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHM 163
             +++ L                   A I+ SL    +      +            G  
Sbjct: 120 GRQIRRLLQYPCLLLILLLGTLGTVKAAILPSLAHGGNGSGTIAN-------WQWFSGIT 172

Query: 164 LLGVAAAFMLIGIMVMRLMIN 184
           ++ +    +L+G+ V RL I 
Sbjct: 173 VITLVICLLLVGLQVSRLPIR 193


>gi|255319718|ref|ZP_05360926.1| pilin biogenesis protein [Acinetobacter radioresistens SK82]
 gi|262380000|ref|ZP_06073155.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
 gi|255303247|gb|EET82456.1| pilin biogenesis protein [Acinetobacter radioresistens SK82]
 gi|262298194|gb|EEY86108.1| general secretion pathway protein F [Acinetobacter radioresistens
           SH164]
          Length = 408

 Score = 34.3 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR-VIETQ 59
           ++ L+KKR +            +   ++AG+P+     ++     +P   E    +    
Sbjct: 58  LEGLMKKRVSTLDITI--FTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEV 115

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G + + ++ +  +Y      + F +++    +  G L   L  ++      + +K K+
Sbjct: 116 EGGNTFAGALRKYPQYFD----NLFCSLVE-SGEQSGALETMLDRVAIYKEKSELLKQKI 170

Query: 120 QA 121
           + 
Sbjct: 171 KK 172


>gi|119477435|ref|ZP_01617626.1| Type II secretory pathway, component PulF [marine gamma
           proteobacterium HTCC2143]
 gi|119449361|gb|EAW30600.1| Type II secretory pathway, component PulF [marine gamma
           proteobacterium HTCC2143]
          Length = 405

 Score = 34.3 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 11/160 (6%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  +  ++     +  +      V      G S ++SIS+  +Y      
Sbjct: 75  LATMMKAGVPMVQSFDIVAEGLDNHSMSELVTEVKNEVASGTSFAQSISKHPKYFD---- 130

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
             F   +    +  G L   L  ++      + +KAK++  +        ++        
Sbjct: 131 ELFCN-LVASGEQSGTLETMLDRIATYKEKTEALKAKIKKATT---YPIAVLVIATIVTG 186

Query: 142 TLVYFTSPGYMNVL--INDPRGHMLLGVAAAFMLIGIMVM 179
            L+    P +               L V +    +    +
Sbjct: 187 ILLVKVIPSFAESFANFGSELPAFTLLVVSLSEAVQEWWL 226


>gi|169797413|ref|YP_001715206.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE]
 gi|184156664|ref|YP_001845003.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|213155773|ref|YP_002317818.1| pilin biogenesis protein [Acinetobacter baumannii AB0057]
 gi|260556305|ref|ZP_05828524.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|301345146|ref|ZP_07225887.1| pilin biogenesis protein [Acinetobacter baumannii AB056]
 gi|301510693|ref|ZP_07235930.1| pilin biogenesis protein [Acinetobacter baumannii AB058]
 gi|301594953|ref|ZP_07239961.1| pilin biogenesis protein [Acinetobacter baumannii AB059]
 gi|332873072|ref|ZP_08441029.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6014059]
 gi|169150340|emb|CAM88237.1| type 4 fimbrial assembly protein [Acinetobacter baumannii AYE]
 gi|183208258|gb|ACC55656.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           ACICU]
 gi|193076177|gb|ABO10792.2| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC
           17978]
 gi|213054933|gb|ACJ39835.1| pilin biogenesis protein [Acinetobacter baumannii AB0057]
 gi|260410360|gb|EEX03659.1| general secretion pathway protein F [Acinetobacter baumannii ATCC
           19606]
 gi|322506551|gb|ADX02005.1| PulF [Acinetobacter baumannii 1656-2]
 gi|323516430|gb|ADX90811.1| Type II secretory pathway, component PulF [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738584|gb|EGJ69454.1| type IV fimbrial assembly protein PilC [Acinetobacter baumannii
           6014059]
          Length = 408

 Score = 34.3 bits (78), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFPN---ALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F      LDI      +   ++AG+P+     ++     +P   E
Sbjct: 47  VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 106

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++      + F +++    +  G L   L  ++    
Sbjct: 107 VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 161

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 162 KSELLKQKIKK 172


>gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
          Length = 374

 Score = 34.3 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 13  LDDFPNALDIIVRSVRAGLPVSDAVAVIV----GQSSDPVRSEFRRVIETQHLGLSLSES 68
           ++++P  +   V  + AG+ +  AV  I           V  +F++  +   LG+S +++
Sbjct: 230 MEEYPIIISRFVLLLGAGMTIQGAVHSIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQA 289

Query: 69  ISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128
           +  +   + L      S ++S     G    + L+ L     +  + + +      E  +
Sbjct: 290 LRELGSSIQLPCYKKLSVLLSQSLLRGTR--DLLSRLEEEETEAFSERKETARRKGEEAS 347

Query: 129 SAWIIGSLPFCVSTLVYFTSPGYMNV 154
           +  ++  +   +  L     P +++ 
Sbjct: 348 TKLLMPMILMLIVILTLLMVPAFLSF 373


>gi|281422852|ref|ZP_06253851.1| conserved hypothetical protein [Prevotella copri DSM 18205]
 gi|281403118|gb|EFB33798.1| conserved hypothetical protein [Prevotella copri DSM 18205]
          Length = 482

 Score = 34.3 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 28/125 (22%)

Query: 1   MKHLIKKRTA-----KFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRV 55
           +K L   R         L   P  LD++ R    G+P+   +  +      P+R EF  +
Sbjct: 190 LKGLALTRQQVLDVYMILGGIPYYLDMLER----GVPLDVCIDRLFFSQDSPLRGEFDFL 245

Query: 56  IETQ--------HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANL-- 105
             +          +   LSE +  M R   + E+           + GG LSE L NL  
Sbjct: 246 FRSLFNDSKHYRKIVEVLSEKMKGMTRKELMDELKL---------KGGGQLSEILENLKK 296

Query: 106 SRILR 110
              +R
Sbjct: 297 CDFIR 301


>gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2]
 gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus
           98/2]
          Length = 658

 Score = 34.3 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62
           +      +  P  L  I    + G  +S A+  +  +     R EF RV+        +G
Sbjct: 428 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEEKR--YRREFNRVLNEITKQDSMG 485

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118
           + ++ +  ++     L + S   T + +  + G    + L  L+      ++ +K   ++
Sbjct: 486 IPITRA--KINTRSWLGKFSL--TTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSR 541

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144
           ++A  +    +  ++ +       ++
Sbjct: 542 MRAYQVLGILTPLLLIATILIAIVII 567


>gi|312621767|ref|YP_004023380.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202234|gb|ADQ45561.1| hypothetical protein Calkro_0668 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 253

 Score = 34.3 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQH 60
           K   K +  K      +   +    ++AGL +     VI     +P  +  F +   T  
Sbjct: 93  KEYEKAQKNKLRSSISDIALMCELGLKAGLSLDRIFTVIAETIVEPRYKDAFLQTAATYK 152

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
               + E    +   + ++E+      +    ++G +  ++L   +++      ++   +
Sbjct: 153 TTHDVEECFLILKGELEIRELEILKRALLEVEKVGLSGIQSLEVFAQV-ETMNKIEQIYK 211

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYF 146
                   + + + ++ F + ++ +F
Sbjct: 212 KSDKARTYTTYAMVAMVFALISIYFF 237


>gi|291557191|emb|CBL34308.1| hypothetical protein ES1_13170 [Eubacterium siraeum V10Sc8a]
          Length = 290

 Score = 34.3 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 48/151 (31%), Gaps = 2/151 (1%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           ++++      + P  +  + + ++    V   +      +      E            S
Sbjct: 138 MREKRDAIEQELPRFVATVEQELKTSRDVLSIMENFKKHAGVHFAYELDVTCADMRS-SS 196

Query: 65  LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
              +++R    +   ++S     + V    G + +     L+   +  +  + K +A  +
Sbjct: 197 YEAALTRFEARIGSAQLSDVVRGL-VSVIRGDDSAVYFKMLAHDFKLIELQRLKAKAAKI 255

Query: 125 EAKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             K   +  G L   + T +       ++ L
Sbjct: 256 PPKIRIFSFGMLMLFLLTYLVVMGMQLLDSL 286


>gi|169831154|ref|YP_001717136.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637998|gb|ACA59504.1| type II secretion system protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 433

 Score = 34.3 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 24  VRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
              + AG+PV  A+ ++  Q+ +  +R     V      G SL+ +  R     P     
Sbjct: 104 AALIDAGVPVLRALRILTAQAPNRRLRDTLDEVAAAVERGSSLAGAFRRHPDVFPS---- 159

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
              T +    +LGG L+  L  LS         + K+++
Sbjct: 160 -VFTSLVEAGELGGQLNLVLERLSVHYEKEHLFREKMRS 197


>gi|157959976|ref|YP_001500010.1| general secretion pathway protein F [Shewanella pealeana ATCC
           700345]
 gi|157844976|gb|ABV85475.1| general secretion pathway protein F [Shewanella pealeana ATCC
           700345]
          Length = 407

 Score = 34.3 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           I   V AGLPV +A+  +  Q   D + S    V      G SL++S++         E+
Sbjct: 76  IATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLADSMAEFPHIFD--EL 133

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QALSMEAKASAWIIGSLPFCV 140
                 +    +  G+L   L  L+     R+ +K+K+ QA+      +   IG +   +
Sbjct: 134 Y---RAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVLTVVAIGVIAILL 190

Query: 141 STLV 144
           + +V
Sbjct: 191 AAVV 194


>gi|77163844|ref|YP_342369.1| type II secretion system protein F [Nitrosococcus oceani ATCC
           19707]
 gi|254435335|ref|ZP_05048842.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
 gi|76882158|gb|ABA56839.1| type II secretion system protein F [Nitrosococcus oceani ATCC
           19707]
 gi|207088446|gb|EDZ65718.1| Bacterial type II secretion system protein F domain [Nitrosococcus
           oceani AFC27]
          Length = 406

 Score = 34.3 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 2   KHLIKKRTAKFL-DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEF-RRVIETQ 59
           K L+ +R  K    +       +   + AG+P+  A  +I          E   ++    
Sbjct: 54  KSLLGQRKKKITPKEIAIFSRQLATMMAAGVPLVQAFEIIGRGHESISMQEMVLKIKGEV 113

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G +L+E++ +  R         F   +    +  G L   L  ++      + +K K+
Sbjct: 114 EGGGTLAEALKQHPRQFD----PLFCN-LVHAGEQSGTLETLLDKIAMYKEKTEAIKGKI 168

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFT 147
           +        +A ++ +       L++  
Sbjct: 169 KKALFYP--TAVVVVAFIITAILLIFVI 194


>gi|322412051|gb|EFY02959.1| CorA-like3 Mg2+ transporter protein [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 305

 Score = 34.3 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              FS+ ++        L E L      +R+    + + +   + +  +      +P  +
Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               Y  +  YM  L + P G+  +   A  + +
Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293


>gi|326318390|ref|YP_004236062.1| Type II secretion system F domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375226|gb|ADX47495.1| Type II secretion system F domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 405

 Score = 34.3 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%)

Query: 23  IVRSVRAGLPVSDAVAVIVG-QSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   ++AG+P+  A  ++    ++  V      +      G SL+ +  +     P+   
Sbjct: 75  MATMMKAGVPLLQAFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRK----YPMY-F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+  +   + +K+K+++  M   A   +   +   + 
Sbjct: 130 DSLYCNLVEAGEAAGILEALLDRLALYMEKTEAIKSKIRSALMYPTAVIIVAFVVVTVIM 189

Query: 142 TLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
             V             D     L  +  + + +    +
Sbjct: 190 IFVIPAFKEVFTSFGADLPAPTLFVMGVSEIFVKWWWL 227


>gi|157372482|ref|YP_001480471.1| general secretion pathway protein F [Serratia proteamaculans 568]
 gi|157324246|gb|ABV43343.1| general secretion pathway protein F [Serratia proteamaculans 568]
          Length = 403

 Score = 34.3 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 5   IKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGL 63
            ++R      +       +   + A LP+ +A+  +  QS    V     R+      GL
Sbjct: 55  ARRRHRLSSGELALVTRQLATLIAAALPLEEALLTVACQSEKKTVIQLITRIRSHVLEGL 114

Query: 64  SLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV-QAL 122
           SLS+++ +            F  +++   +  G L      L+  +  R+ +K K+ QA+
Sbjct: 115 SLSQALMQFPSVFD----RLFCAMVA-AGESSGQLPLIFTELADYVEQRQKIKNKMTQAM 169

Query: 123 SMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVA 168
           +     +   I  +   +  +V      ++++    P    +L + 
Sbjct: 170 TYPVILTLVAIAVIGVLLVAVVPKVIEQFVHMKQTLPLTTQILLLC 215


>gi|326790819|ref|YP_004308640.1| type II secretion system F domain [Clostridium lentocellum DSM
           5427]
 gi|326541583|gb|ADZ83442.1| Type II secretion system F domain [Clostridium lentocellum DSM
           5427]
          Length = 404

 Score = 34.3 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVR-SEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V +G+P+  A+ +      + V   E    I +   G SL +S+S  + Y P+   
Sbjct: 277 MSMLVESGIPMLQAIEITKKVIGNAVADEELDLAIISLKQGQSLYDSLSGSIIYPPI--- 333

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS---AWIIGSLPF 138
               ++I++  + G  L + L  +S   ++  ++      L +E   +   A I+G +  
Sbjct: 334 --MYSMINIGEETGA-LDDMLIKISVYFKEEVDIAVDNMTLLIEPALTIFMAVIVGGIML 390

Query: 139 CVSTLVYFTSPGYM 152
            V    +  +   M
Sbjct: 391 AVMLPTFAAANAMM 404


>gi|53803861|ref|YP_114525.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus
           str. Bath]
 gi|53757622|gb|AAU91913.1| type IV pilin biogenesis protein PilC [Methylococcus capsulatus
           str. Bath]
          Length = 404

 Score = 34.3 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSL 65
           K  A F              + AG+P+  A  ++     +P ++     +      G +L
Sbjct: 65  KHIAVFSRQL-------ATMLSAGVPLVQAFDIVGRGHDNPAMQDLLMSIKADVEAGTTL 117

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
           ++++S+   +        F  ++    +  G L   L  ++      +++K K++     
Sbjct: 118 ADALSKHPVHFD----ELFCNLVR-AGEQAGVLETLLHKVADYKEKTESLKGKIKKALAY 172

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVL 155
             A   +   +   +   V  T        
Sbjct: 173 PIAVVVVAVIVTSILLIFVVPTFEDLFKSF 202


>gi|294101766|ref|YP_003553624.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616746|gb|ADE56900.1| Type II secretion system F domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 396

 Score = 34.3 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 15/185 (8%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           M+     R    L++       +   +  G  +SD++ ++  +     +RS  +++ +  
Sbjct: 50  MRFFPSGRKNLSLEELCLFFTHLSAMISMGGTLSDSLYIMESELPQATLRSILQKIQDEL 109

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G S SES+     + P          +    +  G L + L  LS     R+  + K+
Sbjct: 110 RGGKSFSESLGLSGDWPPG------VLAMVSAGEESGELLKMLRYLSSYFMQRRVFRKKL 163

Query: 120 QALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN-----DPRGHMLLGVAAAFMLI 174
               +     A++       ++ L +   P    VL +          + L  +  F+ +
Sbjct: 164 IGALV---YPAFVAIVSVVVLNILFFKVFPQIEAVLADLGIALPASTRLFLSFSKFFLTV 220

Query: 175 GIMVM 179
           GI ++
Sbjct: 221 GIGII 225


>gi|262273166|ref|ZP_06050982.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Grimontia hollisae CIP 101886]
 gi|262222744|gb|EEY74053.1| general secretion pathway protein F/type II secretory pathway
           component PulF [Grimontia hollisae CIP 101886]
          Length = 406

 Score = 34.3 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V+A +P+ + +  +  Q+    +++    V      G +LS+S+            
Sbjct: 75  LATLVQAAMPLEECIKAVADQTEKQRLKNMLTGVRARVVEGYTLSDSLGDYPHV-----F 129

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSMEAKASAWIIGSLPFCV 140
                 +    +  G+L   L  L+  + +R+ +K K +QA+      +   IG + F +
Sbjct: 130 DQLFRAMVAAGEKSGHLGPVLERLADYVENRQQVKNKLIQAMVYPMVLTVAAIGIVAFLL 189

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVA 168
           +T+V      ++      P    +L  A
Sbjct: 190 ATVVPDIVGQFLQTGAELPNITQVLLAA 217


>gi|237812402|ref|YP_002896853.1| hypothetical protein GBP346_A2150 [Burkholderia pseudomallei
           MSHR346]
 gi|237505033|gb|ACQ97351.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
          Length = 153

 Score = 34.3 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + S WI+  +P       V   S  Y+++L         L + A  + IG  V  +M+  
Sbjct: 23  RISQWILVLMPIVFVAFCVLLISLWYIDILTGWLIAAFALLIEAMLIGIGFFV-FVMVRI 81


>gi|328787590|ref|XP_001121445.2| PREDICTED: hypothetical protein LOC725618 [Apis mellifera]
          Length = 1115

 Score = 34.3 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 53  RRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDR 112
             + +   + +S  +++      +   +++    V ++  + G  L E+LA   RILR+ 
Sbjct: 728 ETITDRLRMAVS--QALGDASVQIDNDDIN----VENIDEEEGKRLDESLAAAFRILREN 781

Query: 113 KNMKAKVQALSMEA 126
           + +++K Q  S +A
Sbjct: 782 RQLRSKKQEKSAQA 795


>gi|182437111|ref|YP_001824830.1| hypothetical protein SGR_3318 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465627|dbj|BAG20147.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 280

 Score = 34.3 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            +  G    +A A +      PV     R      LG   +E+  R      +      +
Sbjct: 145 CIAVGAGPREAAAEVGDSIGGPVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAGPLA 201

Query: 86  TVISVQSQLGGNLSEALANL 105
             +      G   +E +A L
Sbjct: 202 RCLHRAGSTGAPAAEPVARL 221


>gi|251782724|ref|YP_002997027.1| hypothetical protein SDEG_1318 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391354|dbj|BAH81813.1| hypothetical protein SDEG_1318 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 305

 Score = 34.3 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              FS+ ++        L E L      +R+    + + +   + +  +      +P  +
Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               Y  +  YM  L + P G+  +   A  + +
Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293


>gi|121603678|ref|YP_981007.1| type II secretion system protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592647|gb|ABM36086.1| type II secretion system protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 405

 Score = 34.3 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   ++AG+P+  +  ++   + +       +++      +    S+S   R  P+   +
Sbjct: 75  LATMMKAGVPLLQSFDIVGRGNPN---GSVTKLLNDVRTDVETGTSLSGAFRKYPMY-FN 130

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVST 142
                +    +  G L   L  L+  +   + +K+K+++  M   +   +   +   +  
Sbjct: 131 ALYCNLVEAGEAAGILESLLDRLAIYMEKTEAIKSKIKSALMYPASVVVVAFVVVAVIMI 190

Query: 143 LVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179
            V        +    +     L+ +A +   +    +
Sbjct: 191 FVIPAFKQVFSSFGAELPAPTLIVMAISEFFVAYWWL 227


>gi|322834404|ref|YP_004214431.1| Type II secretion system F domain protein [Rahnella sp. Y9602]
 gi|321169605|gb|ADW75304.1| Type II secretion system F domain protein [Rahnella sp. Y9602]
          Length = 406

 Score = 34.3 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 60/178 (33%), Gaps = 22/178 (12%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQH 60
           +    +    F+             ++AGLP+ +++ ++  +   P        V +   
Sbjct: 61  RFWKNQERVAFVRQL-------ATLLQAGLPLVNSLTLLANEHPKPAWHCVLSNVAKGVR 113

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
            G  LS +++      P  ++      I       G L+  L      L  ++  +A+++
Sbjct: 114 EGKPLSVTLNHYPDVFP--DIYRQIISI-------GELTGQLDKCCLQLATQQEQQAELR 164

Query: 121 ALSMEA-KASAWIIGSLPFCVSTLVYFTSPGYMNVL----INDPRGHMLLGVAAAFML 173
           +   +A +    +          ++    P +  +        P    +L +A+  ++
Sbjct: 165 SKVKKALRYPLIVSVIAIVVTLLMLTLVLPEFAKIYASFDAELPWFTRMLVIASGALI 222


>gi|300768050|ref|ZP_07077956.1| competence protein ComGB [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300494399|gb|EFK29561.1| competence protein ComGB [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 322

 Score = 34.3 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 28/174 (16%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS 82
           +   +  G     A    +     P     +  +     G  LS ++      + +    
Sbjct: 9   LADLLGNGFSFQQAFQFTLD-VEGPAFQSLQPALGRLAAGDDLSMALRPY---IAVDLYY 64

Query: 83  FFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQAL------------SMEAKASA 130
            F        +  G L   L    +++R R     +++ L                   A
Sbjct: 65  QFLIA-----ETHGELRRTLMQAGQLMRARAEQGRQIRRLLQYPCLLLILLLGTLGTVKA 119

Query: 131 WIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMIN 184
            I+ SL    +      +            G  ++ +    +L+G+ V RL I 
Sbjct: 120 AILPSLAHGGNGSGTIAN-------WQWFSGITVITLVICLLLVGLQVSRLPIR 166


>gi|296111128|ref|YP_003621509.1| ComGB [Leuconostoc kimchii IMSNU 11154]
 gi|295832659|gb|ADG40540.1| ComGB [Leuconostoc kimchii IMSNU 11154]
          Length = 348

 Score = 33.9 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 72/186 (38%), Gaps = 20/186 (10%)

Query: 2   KHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHL 61
           K L + +  K  +        +   +++G  +S ++ ++    S      + + +     
Sbjct: 11  KQLTRSKRFKIREQIL-FFQELGELLQSGYSISQSLDILASAHSK-----WYQWLTEVRY 64

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLG---GNLSEALANLSRILRDRKNMKAK 118
           GL+   ++  +++          S+ I +Q +L    GNLSE L  + + L   +  + K
Sbjct: 65  GLNQGLALHLILQ-------KNVSSQILLQLKLADQHGNLSETLVAIGQNLAKLQQQQNK 117

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIND----PRGHMLLGVAAAFMLI 174
           V  +         I+G++   +  L+Y     + +   +     P      G  A  +L 
Sbjct: 118 VMQVMRYPLILLSILGAMLVGLKYLLYPILNQWQDKAASSDIPNPAYTYFFGGVACLLLF 177

Query: 175 GIMVMR 180
           G++++ 
Sbjct: 178 GLIIIW 183


>gi|323127550|gb|ADX24847.1| CorA-like3 Mg2+ transporter protein [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 305

 Score = 33.9 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 81  VSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCV 140
              FS+ ++        L E L      +R+    + + +   + +  +      +P  +
Sbjct: 205 FHLFSSRVTRLQTTVVTLRETL----IQIRELAQSQLETKQNKIMSVLTIVTTCCMPLTI 260

Query: 141 STLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLI 174
               Y  +  YM  L + P G+  +   A  + +
Sbjct: 261 LVGWYGMNFKYMPEL-SSPLGYPAVIGFAILIFV 293


>gi|308450241|ref|XP_003088227.1| hypothetical protein CRE_13219 [Caenorhabditis remanei]
 gi|308248714|gb|EFO92666.1| hypothetical protein CRE_13219 [Caenorhabditis remanei]
          Length = 545

 Score = 33.9 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 38  AVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTV---------- 87
             I  + ++ +  E  RV E +   +      + + R +   + S FS V          
Sbjct: 439 EHIPEKMAEDIADEVARVTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIENVNVTL 498

Query: 88  -----ISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127
                  +Q Q GGNL +  A L+  +R+R++ + +      + K
Sbjct: 499 QTIEKQRIQQQDGGNLMDLSALLNSQVRNRESARRQTITSIADKK 543


>gi|209520062|ref|ZP_03268838.1| transcriptional regulator, AraC family [Burkholderia sp. H160]
 gi|209499493|gb|EDZ99572.1| transcriptional regulator, AraC family [Burkholderia sp. H160]
          Length = 277

 Score = 33.9 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 1   MKHLIKKRTAKFLDDFPN-ALDIIVRSVRAGLPVSDAVAVIVGQ----SSDPVRSEFRRV 55
           M+++  +R ++      + A DI+  ++ AG    +A      +    + + +RS  R  
Sbjct: 48  MRYVRARRLSEAARRLADGAPDILAVALDAGYGSHEAFTRAFREQFGITPEALRS--RGH 105

Query: 56  IETQHLGLS--LSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           ++   L     + E++   +     ++   F     +  +   + S+A+
Sbjct: 106 LDKLALMEPIKMDETLLTHLDPPRFEDARAFLVA-GLSERYTCDSSKAI 153


>gi|254784516|ref|YP_003071944.1| general secretion pathway protein F [Teredinibacter turnerae T7901]
 gi|237685057|gb|ACR12321.1| general secretion pathway protein F [Teredinibacter turnerae T7901]
          Length = 410

 Score = 33.9 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 23  IVRSVRAGLPVSDAVAVIVGQSSDPVRSE-FRRVIETQHLGLSLSESISRMVRYMPLQEV 81
           +   V++GLP+ + +A    QS  P       +V      GLSL+++++ + R       
Sbjct: 80  LASLVQSGLPLDEVLASTAKQSRKPAAKTIMLQVRSRVLEGLSLAQAMAEIPRV-----F 134

Query: 82  SFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVS 141
                 +    +  G L   L  L+      +  K K++     A     I+  +   V 
Sbjct: 135 DGLYRAMVRAGESSGYLGPVLERLADYTERSQETKQKLKG----AMVYPIIMMLVSISVV 190

Query: 142 TLVYF 146
           TL+  
Sbjct: 191 TLMMV 195


>gi|218782645|ref|YP_002433963.1| type II secretion system protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764029|gb|ACL06495.1| Type II secretion system protein, PilC [Desulfatibacillum
           alkenivorans AK-01]
          Length = 406

 Score = 33.9 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59
           +  +  +    F   F          +RAG+P+ D   V   Q+ +P ++     + +  
Sbjct: 60  LSRVGARDIILFTKQF-------ATMLRAGIPIIDLFKVAESQTENPKLKKVIAVISKDI 112

Query: 60  HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119
             G SL +++ +     P    S     +    +  G L + L  L  I+   + +K  +
Sbjct: 113 QEGASLHQAMKKH----PSV-FSPLYLSMMRAGETSGALPQVLERLIYIIDHEEKVKKDI 167

Query: 120 QALSMEAKASAWIIGSLPFCV 140
           +   +       ++    F +
Sbjct: 168 RGAMIYPALVTIVLTGAFFLL 188


>gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
 gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
          Length = 662

 Score = 33.9 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 55/146 (37%), Gaps = 14/146 (9%)

Query: 7   KRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQ----HLG 62
           +      +  P  L  I    + G  +S A+  +  +     R EF RV+        +G
Sbjct: 432 REINDVENSLPQFLRDITEFRKIGYDLSRAIKTLAEEKR--YRREFNRVLNEITKQDSMG 489

Query: 63  LSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR----ILRDRKNMKAK 118
           + ++ +  ++     L + S   T + +  + G    + L  L+      ++ +K   ++
Sbjct: 490 IPITRA--KINTRSWLGKFSL--TTVQILIESGAVRPDLLEYLTEFTLNFIQSKKEAFSR 545

Query: 119 VQALSMEAKASAWIIGSLPFCVSTLV 144
           ++A  +    +  ++ +       ++
Sbjct: 546 MRAYQVLGILTPLLLIATILIAIVII 571


>gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 406

 Score = 33.9 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 7/139 (5%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHLGLSLS 66
           R      +       +   V AGL + +A+  +  Q     +RS    V      G SL+
Sbjct: 60  RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAHLRSMVATVRSKVVEGYSLA 119

Query: 67  ESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAK-VQALSME 125
           +S++             F ++++   +  G+L + L  L+     R++M+ K +QA+   
Sbjct: 120 DSLAAFPHVFD----QLFRSMVA-AGEKSGHLEKVLNRLADYTEQRQHMRTKLLQAMIYP 174

Query: 126 AKASAWIIGSLPFCVSTLV 144
              +   IG +   ++ +V
Sbjct: 175 IVLTCVAIGVISILLTAVV 193


>gi|226197266|ref|ZP_03792843.1| hypothetical protein BUH_1813 [Burkholderia pseudomallei Pakistan
           9]
 gi|251767321|ref|ZP_02266787.2| hypothetical protein BMAPRL20_A1015 [Burkholderia mallei PRL-20]
 gi|225930645|gb|EEH26655.1| hypothetical protein BUH_1813 [Burkholderia pseudomallei Pakistan
           9]
 gi|243063167|gb|EES45353.1| hypothetical protein BMAPRL20_A1015 [Burkholderia mallei PRL-20]
          Length = 158

 Score = 33.9 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 127 KASAWIIGSLPFCVSTL-VYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLMINF 185
           + S WI+  +P       V   S  Y+++L         L + A  + IG  V  +M+  
Sbjct: 23  RISQWILVLMPIVFVAFCVLLISLWYIDILTGWLIAAFALLIEAMLIGIGFFV-FVMVRI 81


>gi|242398766|ref|YP_002994190.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
 gi|242265159|gb|ACS89841.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
          Length = 570

 Score = 33.9 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 2/177 (1%)

Query: 8   RTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ-SSDPVRSEFRRVIETQ-HLGLSL 65
           +  K     P  +        + +  ++ +  +  +   +P+  +  ++          +
Sbjct: 78  KKVKINSKIPYFVTYFAVLSTSEVGRNELIHTLAKEKVLEPISRDMEKIYHLIAKFNRGM 137

Query: 66  SESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125
            E+   +V+  P +  S F   ++     G  L E L    +I+ D      +     ++
Sbjct: 138 PEAFRFLVKRTPSKVFSDFLERLAYSLDSGVELREYLLQEQKIVMDDYQTFYEGALYDLD 197

Query: 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMRLM 182
                +    +            P      +        + V    M + I++   M
Sbjct: 198 VFKEVYSSLIISVVFMVTFIIIGPIITGQDLVTLTIFTFILVMVVEMGVLILIKHKM 254


>gi|326777721|ref|ZP_08236986.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658054|gb|EGE42900.1| Type II secretion system F domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 280

 Score = 33.9 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 26  SVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
            +  G    +A A +      PV     R      LG   +E+  R      +      +
Sbjct: 145 CIAVGAGPREAAAEVGDSIGGPVGDRLARTAAEIRLGGEPAEAWGRFGE---IPGAGPLA 201

Query: 86  TVISVQSQLGGNLSEALANL 105
             +      G   +E +A L
Sbjct: 202 RCLHRAGSTGAPAAEPVARL 221


>gi|228916876|ref|ZP_04080439.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228842799|gb|EEM87884.1| ComG operon protein 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 315

 Score = 33.9 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 3   HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQHL 61
            LI K +  F              +  GL V +A+ +++ Q   P  + E  R+      
Sbjct: 176 FLILKHSHYFATQL-------SGLLHGGLSVLEALTIMMEQKYHPFFQYEAGRIERQLIA 228

Query: 62  GLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQA 121
           G  L   I++       +E+S+    I    Q  GNL+  L + S ++ ++   K K   
Sbjct: 229 GEPLQSIIAKSG--YYEEELSY----IITHGQANGNLAIELGDYSDLIMEKMEQKMK--- 279

Query: 122 LSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157
                +    I   L  C+  +V       +  +  
Sbjct: 280 -----RMLVIIQPILFTCIGGIVVLMYLAMIMPMFQ 310


>gi|126640410|ref|YP_001083394.1| type 4 fimbrial assembly protein [Acinetobacter baumannii ATCC
           17978]
          Length = 376

 Score = 33.9 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 1   MKHLIKKRTAKFLDDFPN---ALDI------IVRSVRAGLPVSDAVAVIVGQSSDPVRSE 51
           ++++ +KR       F      LDI      +   ++AG+P+     ++     +P   E
Sbjct: 15  VRNIREKRKNILEGLFKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMRE 74

Query: 52  FRR-VIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILR 110
               +      G + + ++ +  ++      + F +++    +  G L   L  ++    
Sbjct: 75  VVLGIKGEVEGGSTFASALRKYPQHFD----NLFCSLVE-SGEQSGALETMLDRVAIYKE 129

Query: 111 DRKNMKAKVQA 121
             + +K K++ 
Sbjct: 130 KSELLKQKIKK 140


>gi|41057225|ref|NP_958251.1| hypothetical protein VWBp09 [Streptomyces phage VWB]
 gi|39656048|gb|AAR29699.1| hypothetical protein [Streptomyces phage VWB]
          Length = 359

 Score = 33.9 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 8/44 (18%)

Query: 21  DIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLS 64
           D+  R+ RAG         +    SDP+  E R++ +    G+ 
Sbjct: 269 DVWRRANRAGH--------VARDGSDPLSQELRQIADDIAKGVD 304


>gi|258540644|ref|YP_003175143.1| ABC transporter permease [Lactobacillus rhamnosus Lc 705]
 gi|257152320|emb|CAR91292.1| ABC transporter, permease protein [Lactobacillus rhamnosus Lc 705]
          Length = 352

 Score = 33.9 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 108 ILRDR-KNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLG 166
           ++R +    +A + AL  +    A    ++   +  L  F  P  M    N P   + + 
Sbjct: 264 VMRAQGIRTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAMPFYANPPLF-IAIA 322

Query: 167 VAAAFMLI--GIMVMRLMINFD 186
            A   M +  G+  +R +++ D
Sbjct: 323 AALILMSLVGGLFSLRRILHID 344


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.317    0.173    0.459 

Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,693,205,761
Number of Sequences: 14124377
Number of extensions: 153508624
Number of successful extensions: 1000387
Number of sequences better than 10.0: 5045
Number of HSP's better than 10.0 without gapping: 3458
Number of HSP's successfully gapped in prelim test: 2933
Number of HSP's that attempted gapping in prelim test: 991182
Number of HSP's gapped (non-prelim): 8643
length of query: 187
length of database: 4,842,793,630
effective HSP length: 131
effective length of query: 56
effective length of database: 2,992,500,243
effective search space: 167580013608
effective search space used: 167580013608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 78 (34.3 bits)